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Sample records for 3d surface reconstruction

  1. Neural Network Based 3D Surface Reconstruction

    Vincy Joseph

    2009-11-01

    Full Text Available This paper proposes a novel neural-network-based adaptive hybrid-reflectance three-dimensional (3-D surface reconstruction model. The neural network combines the diffuse and specular components into a hybrid model. The proposed model considers the characteristics of each point and the variant albedo to prevent the reconstructed surface from being distorted. The neural network inputs are the pixel values of the two-dimensional images to be reconstructed. The normal vectors of the surface can then be obtained from the output of the neural network after supervised learning, where the illuminant direction does not have to be known in advance. Finally, the obtained normal vectors can be applied to integration method when reconstructing 3-D objects. Facial images were used for training in the proposed approach

  2. 3D Surface Reconstruction and Automatic Camera Calibration

    Jalobeanu, Andre

    2004-01-01

    Illustrations in this view-graph presentation are presented on a Bayesian approach to 3D surface reconstruction and camera calibration.Existing methods, surface analysis and modeling,preliminary surface reconstruction results, and potential applications are addressed.

  3. Streaming Surface Reconstruction from Real Time 3D Measurements

    Bodenmüller, Tim

    2009-01-01

    In this thesis, a robust method for fast surface reconstruction from real time 3D point streams is presented. It is designed for the integration in a fast visual feedback system that supports a user while manually 3D scanning objects. The method iteratively generates a dense and homogeneous triangular mesh by inserting sample points from the real time data stream and refining the surface model locally. A spatial data structure ensures a fast access to growing point sets and continuously updat...

  4. NeuralNetwork Based 3D Surface Reconstruction

    Joseph, Vincy

    2009-01-01

    This paper proposes a novel neural-network-based adaptive hybrid-reflectance three-dimensional (3-D) surface reconstruction model. The neural network combines the diffuse and specular components into a hybrid model. The proposed model considers the characteristics of each point and the variant albedo to prevent the reconstructed surface from being distorted. The neural network inputs are the pixel values of the two-dimensional images to be reconstructed. The normal vectors of the surface can then be obtained from the output of the neural network after supervised learning, where the illuminant direction does not have to be known in advance. Finally, the obtained normal vectors can be applied to integration method when reconstructing 3-D objects. Facial images were used for training in the proposed approach

  5. 3D surface reconstruction multi-scale hierarchical approaches

    Bellocchio, Francesco; Ferrari, Stefano; Piuri, Vincenzo

    2012-01-01

    3D Surface Reconstruction: Multi-Scale Hierarchical Approaches presents methods to model 3D objects in an incremental way so as to capture more finer details at each step. The configuration of the model parameters, the rationale and solutions are described and discussed in detail so the reader has a strong understanding of the methodology. Modeling starts from data captured by 3D digitizers and makes the process even more clear and engaging. Innovative approaches, based on two popular machine learning paradigms, namely Radial Basis Functions and the Support Vector Machines, are also introduced

  6. Recent advances in 3D SEM surface reconstruction.

    Tafti, Ahmad P; Kirkpatrick, Andrew B; Alavi, Zahrasadat; Owen, Heather A; Yu, Zeyun

    2015-11-01

    The scanning electron microscope (SEM), as one of the most commonly used instruments in biology and material sciences, employs electrons instead of light to determine the surface properties of specimens. However, the SEM micrographs still remain 2D images. To effectively measure and visualize the surface attributes, we need to restore the 3D shape model from the SEM images. 3D surface reconstruction is a longstanding topic in microscopy vision as it offers quantitative and visual information for a variety of applications consisting medicine, pharmacology, chemistry, and mechanics. In this paper, we attempt to explain the expanding body of the work in this area, including a discussion of recent techniques and algorithms. With the present work, we also enhance the reliability, accuracy, and speed of 3D SEM surface reconstruction by designing and developing an optimized multi-view framework. We then consider several real-world experiments as well as synthetic data to examine the qualitative and quantitative attributes of our proposed framework. Furthermore, we present a taxonomy of 3D SEM surface reconstruction approaches and address several challenging issues as part of our future work.

  7. 3DSEM++: Adaptive and intelligent 3D SEM surface reconstruction.

    Tafti, Ahmad P; Holz, Jessica D; Baghaie, Ahmadreza; Owen, Heather A; He, Max M; Yu, Zeyun

    2016-08-01

    Structural analysis of microscopic objects is a longstanding topic in several scientific disciplines, such as biological, mechanical, and materials sciences. The scanning electron microscope (SEM), as a promising imaging equipment has been around for decades to determine the surface properties (e.g., compositions or geometries) of specimens by achieving increased magnification, contrast, and resolution greater than one nanometer. Whereas SEM micrographs still remain two-dimensional (2D), many research and educational questions truly require knowledge and facts about their three-dimensional (3D) structures. 3D surface reconstruction from SEM images leads to remarkable understanding of microscopic surfaces, allowing informative and qualitative visualization of the samples being investigated. In this contribution, we integrate several computational technologies including machine learning, contrario methodology, and epipolar geometry to design and develop a novel and efficient method called 3DSEM++ for multi-view 3D SEM surface reconstruction in an adaptive and intelligent fashion. The experiments which have been performed on real and synthetic data assert the approach is able to reach a significant precision to both SEM extrinsic calibration and its 3D surface modeling.

  8. Deformable Surface 3D Reconstruction from Monocular Images

    Salzmann, Matthieu

    2010-01-01

    Being able to recover the shape of 3D deformable surfaces from a single video stream would make it possible to field reconstruction systems that run on widely available hardware without requiring specialized devices. However, because many different 3D shapes can have virtually the same projection, such monocular shape recovery is inherently ambiguous. In this survey, we will review the two main classes of techniques that have proved most effective so far: The template-based methods that rely on establishing correspondences with a reference image in which the shape is already known, and non-rig

  9. 3D reconstruction of concave surfaces using polarisation imaging

    Sohaib, A.; Farooq, A. R.; Ahmed, J.; Smith, L. N.; Smith, M. L.

    2015-06-01

    This paper presents a novel algorithm for improved shape recovery using polarisation-based photometric stereo. The majority of previous research using photometric stereo involves 3D reconstruction using both the diffuse and specular components of light; however, this paper suggests the use of the specular component only as it is the only form of light that comes directly off the surface without subsurface scattering or interreflections. Experiments were carried out on both real and synthetic surfaces. Real images were obtained using a polarisation-based photometric stereo device while synthetic images were generated using PovRay® software. The results clearly demonstrate that the proposed method can extract three-dimensional (3D) surface information effectively even for concave surfaces with complex texture and surface reflectance.

  10. Colored 3D surface reconstruction using Kinect sensor

    Guo, Lian-peng; Chen, Xiang-ning; Chen, Ying; Liu, Bin

    2015-03-01

    A colored 3D surface reconstruction method which effectively fuses the information of both depth and color image using Microsoft Kinect is proposed and demonstrated by experiment. Kinect depth images are processed with the improved joint-bilateral filter based on region segmentation which efficiently combines the depth and color data to improve its quality. The registered depth data are integrated to achieve a surface reconstruction through the colored truncated signed distance fields presented in this paper. Finally, the improved ray casting for rendering full colored surface is implemented to estimate color texture of the reconstruction object. Capturing the depth and color images of a toy car, the improved joint-bilateral filter based on region segmentation is used to improve the quality of depth images and the peak signal-to-noise ratio (PSNR) is approximately 4.57 dB, which is better than 1.16 dB of the joint-bilateral filter. The colored construction results of toy car demonstrate the suitability and ability of the proposed method.

  11. Reconstruction of ploughed soil surface with 3D fractal interpolation

    Liu, Y.; Lu, Z.; Hoogmoed, W.B.; Li, X.

    2014-01-01

    By using a laser profiler, the roughness of ploughed soil surface was obtained. 3D fractal interpolation method was used to interpolate several kinds of reduced measured surface data which were reduced from the original measured ploughed soil surface elevation data in different reduction rates. Also

  12. Multiframe image point matching and 3-d surface reconstruction.

    Tsai, R Y

    1983-02-01

    This paper presents two new methods, the Joint Moment Method (JMM) and the Window Variance Method (WVM), for image matching and 3-D object surface reconstruction using multiple perspective views. The viewing positions and orientations for these perspective views are known a priori, as is usually the case for such applications as robotics and industrial vision as well as close range photogrammetry. Like the conventional two-frame correlation method, the JMM and WVM require finding the extrema of 1-D curves, which are proved to theoretically approach a delta function exponentially as the number of frames increases for the JMM and are much sharper than the two-frame correlation function for both the JMM and the WVM, even when the image point to be matched cannot be easily distinguished from some of the other points. The theoretical findings have been supported by simulations. It is also proved that JMM and WVM are not sensitive to certain radiometric effects. If the same window size is used, the computational complexity for the proposed methods is about n - 1 times that for the two-frame method where n is the number of frames. Simulation results show that the JMM and WVM require smaller windows than the two-frame correlation method with better accuracy, and therefore may even be more computationally feasible than the latter since the computational complexity increases quadratically as a function of the window size.

  13. Diagnostic value of 3 D CT surface reconstruction in spinal fractures

    Koesling, S. [Department of Radiology, Univ. of Leipzig (Germany); Dietrich, K. [Department of Radiology, Univ. of Leipzig (Germany); Steinecke, R. [Department of Radiology, Univ. of Leipzig (Germany); Kloeppel, R. [Department of Radiology, Univ. of Leipzig (Germany); Schulz, H.G. [Department of Radiology, Univ. of Leipzig (Germany)

    1997-02-01

    Our purpose was to evaluate the diagnostic value of three-dimensional (3 D) CT surface reconstruction in spinal fractures in comparison with axial and reformatted images. A total of 50 patients with different CT-proven spinal fractures were analysed retrospectively. Based on axial scans and reformatted images, the spinal fractures were classified according to several classifications as Magerl for the thoraco-lumbar and lower cervical spine by one radiologist. Another radiologist performed 3 D CT surface reconstructions with the aim of characterizing the different types of spinal fractures. A third radiologist classified the 3 D CT surface reconstruction according to the Magerl classification. The results of the blinded reading process were compared. It was checked to see in which type and subgroup 3 D surface reconstructions were helpful. Readers one and two obtained the same results in the classification. The 3 D surface reconstruction did not yield any additional diagnostic information concerning type A and B injuries. Indeed, the full extent of the fracture could be easier recognized with axial and reformatted images in all cases. In 10 cases of C injuries, the dislocation of parts of vertebrae could be better recognized with the help of 3 D reconstructions. A 3 D CT surface reconstruction is only useful in rotational and shear vertebral injuries (Magerl type C injury). (orig.). With 4 figs., 1 tab.

  14. QUALITY ANALYSIS OF 3D SURFACE RECONSTRUCTION USING MULTI-PLATFORM PHOTOGRAMMETRIC SYSTEMS

    Z. Lari

    2016-06-01

    Full Text Available In recent years, the necessity of accurate 3D surface reconstruction has been more pronounced for a wide range of mapping, modelling, and monitoring applications. The 3D data for satisfying the needs of these applications can be collected using different digital imaging systems. Among them, photogrammetric systems have recently received considerable attention due to significant improvements in digital imaging sensors, emergence of new mapping platforms, and development of innovative data processing techniques. To date, a variety of techniques haven been proposed for 3D surface reconstruction using imagery collected by multi-platform photogrammetric systems. However, these approaches suffer from the lack of a well-established quality control procedure which evaluates the quality of reconstructed 3D surfaces independent of the utilized reconstruction technique. Hence, this paper aims to introduce a new quality assessment platform for the evaluation of the 3D surface reconstruction using photogrammetric data. This quality control procedure is performed while considering the quality of input data, processing procedures, and photo-realistic 3D surface modelling. The feasibility of the proposed quality control procedure is finally verified by quality assessment of the 3D surface reconstruction using images from different photogrammetric systems.

  15. Performance analysis of different surface reconstruction algorithms for 3D reconstruction of outdoor objects from their digital images.

    Maiti, Abhik; Chakravarty, Debashish

    2016-01-01

    3D reconstruction of geo-objects from their digital images is a time-efficient and convenient way of studying the structural features of the object being modelled. This paper presents a 3D reconstruction methodology which can be used to generate photo-realistic 3D watertight surface of different irregular shaped objects, from digital image sequences of the objects. The 3D reconstruction approach described here is robust, simplistic and can be readily used in reconstructing watertight 3D surface of any object from its digital image sequence. Here, digital images of different objects are used to build sparse, followed by dense 3D point clouds of the objects. These image-obtained point clouds are then used for generation of photo-realistic 3D surfaces, using different surface reconstruction algorithms such as Poisson reconstruction and Ball-pivoting algorithm. Different control parameters of these algorithms are identified, which affect the quality and computation time of the reconstructed 3D surface. The effects of these control parameters in generation of 3D surface from point clouds of different density are studied. It is shown that the reconstructed surface quality of Poisson reconstruction depends on Samples per node (SN) significantly, greater SN values resulting in better quality surfaces. Also, the quality of the 3D surface generated using Ball-Pivoting algorithm is found to be highly depend upon Clustering radius and Angle threshold values. The results obtained from this study give the readers of the article a valuable insight into the effects of different control parameters on determining the reconstructed surface quality.

  16. A photogrammetry-based system for 3D surface reconstruction of prosthetics and orthotics.

    Li, Guang-kun; Gao, Fan; Wang, Zhi-gang

    2011-01-01

    The objective of this study is to develop an innovative close range digital photogrammetry (CRDP) system using the commercial digital SLR cameras to measure and reconstruct the 3D surface of prosthetics and orthotics. This paper describes the instrumentation, techniques and preliminary results of the proposed system. The technique works by taking pictures of the object from multiple view angles. The series of pictures were post-processed via feature point extraction, point match and 3D surface reconstruction. In comparison with the traditional method such as laser scanning, the major advantages of our instrument include the lower cost, compact and easy-to-use hardware, satisfactory measurement accuracy, and significantly less measurement time. Besides its potential applications in prosthetics and orthotics surface measurement, the simple setup and its ease of use will make it suitable for various 3D surface reconstructions.

  17. One-shot 3d surface reconstruction from instantaneous frequencies: solutions to ambiguity problems

    Heijden, van der F.; Spreeuwers, L.J.; Nijmeijer, A.C.

    2009-01-01

    Phase-measuring profilometry is a well known technique for 3D surface reconstruction based on a sinusoidal pattern that is projected on a scene. If the surface is partly occluded by, for instance, other objects, then the depth shows abrupt transitions at the edges of these occlusions. This causes am

  18. A continuous surface reconstruction method on point cloud captured from a 3D surface photogrammetry system

    Liu, Wenyang [Department of Bioengineering, University of California, Los Angeles, California 90095 (United States); Cheung, Yam; Sabouri, Pouya; Arai, Tatsuya J.; Sawant, Amit [Department of Radiation Oncology, University of Texas Southwestern, Dallas, Texas 75390 (United States); Ruan, Dan, E-mail: druan@mednet.ucla.edu [Department of Bioengineering, University of California, Los Angeles, California 90095 and Department of Radiation Oncology, University of California, Los Angeles, California 90095 (United States)

    2015-11-15

    achieved submillimeter reconstruction RMSE under different configurations, demonstrating quantitatively the faith of the proposed method in preserving local structural properties of the underlying surface in the presence of noise and missing measurements, and its robustness toward variations of such characteristics. On point clouds from the human subject, the proposed method successfully reconstructed all patient surfaces, filling regions where raw point coordinate readings were missing. Within two comparable regions of interest in the chest area, similar mean curvature distributions were acquired from both their reconstructed surface and CT surface, with mean and standard deviation of (μ{sub recon} = − 2.7 × 10{sup −3} mm{sup −1}, σ{sub recon} = 7.0 × 10{sup −3} mm{sup −1}) and (μ{sub CT} = − 2.5 × 10{sup −3} mm{sup −1}, σ{sub CT} = 5.3 × 10{sup −3} mm{sup −1}), respectively. The agreement of local geometry properties between the reconstructed surfaces and the CT surface demonstrated the ability of the proposed method in faithfully representing the underlying patient surface. Conclusions: The authors have integrated and developed an accurate level-set based continuous surface reconstruction method on point clouds acquired by a 3D surface photogrammetry system. The proposed method has generated a continuous representation of the underlying phantom and patient surfaces with good robustness against noise and missing measurements. It serves as an important first step for further development of motion tracking methods during radiotherapy.

  19. A continuous surface reconstruction method on point cloud captured from a 3D surface photogrammetry system

    Liu, Wenyang; Cheung, Yam; Sabouri, Pouya; Arai, Tatsuya J.; Sawant, Amit; Ruan, Dan

    2015-01-01

    achieved submillimeter reconstruction RMSE under different configurations, demonstrating quantitatively the faith of the proposed method in preserving local structural properties of the underlying surface in the presence of noise and missing measurements, and its robustness toward variations of such characteristics. On point clouds from the human subject, the proposed method successfully reconstructed all patient surfaces, filling regions where raw point coordinate readings were missing. Within two comparable regions of interest in the chest area, similar mean curvature distributions were acquired from both their reconstructed surface and CT surface, with mean and standard deviation of (μrecon = − 2.7 × 10−3 mm−1, σrecon = 7.0 × 10−3 mm−1) and (μCT = − 2.5 × 10−3 mm−1, σCT = 5.3 × 10−3 mm−1), respectively. The agreement of local geometry properties between the reconstructed surfaces and the CT surface demonstrated the ability of the proposed method in faithfully representing the underlying patient surface. Conclusions: The authors have integrated and developed an accurate level-set based continuous surface reconstruction method on point clouds acquired by a 3D surface photogrammetry system. The proposed method has generated a continuous representation of the underlying phantom and patient surfaces with good robustness against noise and missing measurements. It serves as an important first step for further development of motion tracking methods during radiotherapy. PMID:26520747

  20. Review of three-dimensional (3D) surface imaging for oncoplastic, reconstructive and aesthetic breast surgery.

    O'Connell, Rachel L; Stevens, Roger J G; Harris, Paul A; Rusby, Jennifer E

    2015-08-01

    Three-dimensional surface imaging (3D-SI) is being marketed as a tool in aesthetic breast surgery. It has recently also been studied in the objective evaluation of cosmetic outcome of oncological procedures. The aim of this review is to summarise the use of 3D-SI in oncoplastic, reconstructive and aesthetic breast surgery. An extensive literature review was undertaken to identify published studies. Two reviewers independently screened all abstracts and selected relevant articles using specific inclusion criteria. Seventy two articles relating to 3D-SI for breast surgery were identified. These covered endpoints such as image acquisition, calculations and data obtainable, comparison of 3D and 2D imaging and clinical research applications of 3D-SI. The literature provides a favourable view of 3D-SI. However, evidence of its superiority over current methods of clinical decision making, surgical planning, communication and evaluation of outcome is required before it can be accepted into mainstream practice.

  1. A Computer Vision Method for 3D Reconstruction of Curves-Marked Free-Form Surfaces

    Xiong Hanwei; Zhang Xiangwei

    2001-01-01

    Visual method is now broadly used in reverse engineering for 3D reconstruction. Thetraditional computer vision methods are feature-based, i.e., they require that the objects must revealfeatures owing to geometry or textures. For textureless free-form surfaces, dense feature points areadded artificially. In this paper, a new method is put forward combining computer vision with CAGD.The surface is subdivided into N-side Gregory patches using marked curves, and a stereo algorithm isused to reconstruct the curves. Then, the cross boundary tangent vector is computed throughreflectance analysis. At last, the whole surface can be reconstructed by jointing these patches withG1 continuity.

  2. In vivo bioluminescence tomography based on multi-view projection and 3D surface reconstruction

    Zhang, Shuang; Wang, Kun; Leng, Chengcai; Deng, Kexin; Hu, Yifang; Tian, Jie

    2015-03-01

    Bioluminescence tomography (BLT) is a powerful optical molecular imaging modality, which enables non-invasive realtime in vivo imaging as well as 3D quantitative analysis in preclinical studies. In order to solve the inverse problem and reconstruct inner light sources accurately, the prior structural information is commonly necessary and obtained from computed tomography or magnetic resonance imaging. This strategy requires expensive hybrid imaging system, complicated operation protocol and possible involvement of ionizing radiation. The overall robustness highly depends on the fusion accuracy between the optical and structural information. In this study we present a pure optical bioluminescence tomographic system (POBTS) and a novel BLT method based on multi-view projection acquisition and 3D surface reconstruction. The POBTS acquired a sparse set of white light surface images and bioluminescent images of a mouse. Then the white light images were applied to an approximate surface model to generate a high quality textured 3D surface reconstruction of the mouse. After that we integrated multi-view luminescent images based on the previous reconstruction, and applied an algorithm to calibrate and quantify the surface luminescent flux in 3D.Finally, the internal bioluminescence source reconstruction was achieved with this prior information. A BALB/C mouse with breast tumor of 4T1-fLuc cells mouse model were used to evaluate the performance of the new system and technique. Compared with the conventional hybrid optical-CT approach using the same inverse reconstruction method, the reconstruction accuracy of this technique was improved. The distance error between the actual and reconstructed internal source was decreased by 0.184 mm.

  3. SU-E-J-128: 3D Surface Reconstruction of a Patient Using Epipolar Geometry

    Kotoku, J; Nakabayashi, S; Kumagai, S; Ishibashi, T; Kobayashi, T [Teikyo University, Itabashi-ku, Tokyo (Japan); Haga, A; Saotome, N [University of Tokyo Hospital, Bunkyo-ku, Tokyo (Japan); Arai, N [Teikyo University Hospital, Itabashi-ku, Tokyo (Japan)

    2014-06-01

    Purpose: To obtain a 3D surface data of a patient in a non-invasive way can substantially reduce the effort for the registration of patient in radiation therapy. To achieve this goal, we introduced the multiple view stereo technique, which is known to be used in a 'photo tourism' on the internet. Methods: 70 Images were taken with a digital single-lens reflex camera from different angles and positions. The camera positions and angles were inferred later in the reconstruction step. A sparse 3D reconstruction model was locating by SIFT features, which is robust for rotation and shift variance, in each image. We then found a set of correspondences between pairs of images by computing the fundamental matrix using the eight-point algorithm with RANSAC. After the pair matching, we optimized the parameter including camera positions to minimize the reprojection error by use of bundle adjustment technique (non-linear optimization). As a final step, we performed dense reconstruction and associate a color with each point using the library of PMVS. Results: Surface data were reconstructed well by visual inspection. The human skin is reconstructed well, althogh the reconstruction was time-consuming for direct use in daily clinical practice. Conclusion: 3D reconstruction using multi view stereo geometry is a promising tool for reducing the effort of patient setup. This work was supported by JSPS KAKENHI(25861128)

  4. A method for brain 3D surface reconstruction from MR images

    Zhao, De-xin

    2014-09-01

    Due to the encephalic tissues are highly irregular, three-dimensional (3D) modeling of brain always leads to complicated computing. In this paper, we explore an efficient method for brain surface reconstruction from magnetic resonance (MR) images of head, which is helpful to surgery planning and tumor localization. A heuristic algorithm is proposed for surface triangle mesh generation with preserved features, and the diagonal length is regarded as the heuristic information to optimize the shape of triangle. The experimental results show that our approach not only reduces the computational complexity, but also completes 3D visualization with good quality.

  5. Reconstruction Accuracy Assessment of Surface and Underwater 3D Motion Analysis: A New Approach

    Kelly de Jesus

    2015-01-01

    Full Text Available This study assessed accuracy of surface and underwater 3D reconstruction of a calibration volume with and without homography. A calibration volume (6000 × 2000 × 2500 mm with 236 markers (64 above and 88 underwater control points—with 8 common points at water surface—and 92 validation points was positioned on a 25 m swimming pool and recorded with two surface and four underwater cameras. Planar homography estimation for each calibration plane was computed to perform image rectification. Direct linear transformation algorithm for 3D reconstruction was applied, using 1600000 different combinations of 32 and 44 points out of the 64 and 88 control points for surface and underwater markers (resp.. Root Mean Square (RMS error with homography of control and validations points was lower than without it for surface and underwater cameras (P≤0.03. With homography, RMS errors of control and validation points were similar between surface and underwater cameras (P≥0.47. Without homography, RMS error of control points was greater for underwater than surface cameras (P≤0.04 and the opposite was observed for validation points (P≤0.04. It is recommended that future studies using 3D reconstruction should include homography to improve swimming movement analysis accuracy.

  6. A Hierarchical Building Segmentation in Digital Surface Models for 3D Reconstruction

    Yiming Yan

    2017-01-01

    Full Text Available In this study, a hierarchical method for segmenting buildings in a digital surface model (DSM, which is used in a novel framework for 3D reconstruction, is proposed. Most 3D reconstructions of buildings are model-based. However, the limitations of these methods are overreliance on completeness of the offline-constructed models of buildings, and the completeness is not easily guaranteed since in modern cities buildings can be of a variety of types. Therefore, a model-free framework using high precision DSM and texture-images buildings was introduced. There are two key problems with this framework. The first one is how to accurately extract the buildings from the DSM. Most segmentation methods are limited by either the terrain factors or the difficult choice of parameter-settings. A level-set method are employed to roughly find the building regions in the DSM, and then a recently proposed ‘occlusions of random textures model’ are used to enhance the local segmentation of the buildings. The second problem is how to generate the facades of buildings. Synergizing with the corresponding texture-images, we propose a roof-contour guided interpolation of building facades. The 3D reconstruction results achieved by airborne-like images and satellites are compared. Experiments show that the segmentation method has good performance, and 3D reconstruction is easily performed by our framework, and better visualization results can be obtained by airborne-like images, which can be further replaced by UAV images.

  7. GlaRe, a GIS tool to reconstruct the 3D surface of palaeoglaciers

    Pellitero, Ramón; Rea, Brice R.; Spagnolo, Matteo; Bakke, Jostein; Ivy-Ochs, Susan; Frew, Craig R.; Hughes, Philip; Ribolini, Adriano; Lukas, Sven; Renssen, Hans

    2016-09-01

    Glacier reconstructions are widely used in palaeoclimatic studies and this paper presents a new semi-automated method for generating glacier reconstructions: GlaRe, is a toolbox coded in Python and operating in ArcGIS. This toolbox provides tools to generate the ice thickness from the bed topography along a palaeoglacier flowline applying the standard flow law for ice, and generates the 3D surface of the palaeoglacier using multiple interpolation methods. The toolbox performance has been evaluated using two extant glaciers, an icefield and a cirque/valley glacier from which the subglacial topography is known, using the basic reconstruction routine in GlaRe. Results in terms of ice surface, ice extent and equilibrium line altitude show excellent agreement that confirms the robustness of this procedure in the reconstruction of palaeoglaciers from glacial landforms such as frontal moraines.

  8. Quantitative roughness characterization and 3D reconstruction of electrode surface using cyclic voltammetry and SEM image

    Dhillon, Shweta; Kant, Rama, E-mail: rkant@chemistry.du.ac.in

    2013-10-01

    Area measurements from cyclic voltammetry (CV) and image from scanning electron microscopy (SEM) are used to characterize electrode statistical morphology, 3D surface reconstruction and its electroactivity. SEM images of single phased materials correspond to two-dimensional (2D) projections of 3D structures, leading to an incomplete characterization. Lack of third dimension information in SEM image is circumvented using equivalence between denoised SEM image and CV area measurements. This CV-SEM method can be used to estimate power spectral density (PSD), width, gradient, finite fractal nature of roughness and local morphology of the electrode. We show that the surface morphological statistical property like distribution function of gradient can be related to local electro-activity. Electrode surface gradient micrographs generated here can provide map of electro-activity sites. Finally, the densely and uniformly packed small gradient over the Pt-surface is the determining criterion for high intrinsic electrode activity.

  9. An adaptive learning approach for 3-D surface reconstruction from point clouds.

    Junior, Agostinho de Medeiros Brito; Neto, Adrião Duarte Dória; de Melo, Jorge Dantas; Goncalves, Luiz Marcos Garcia

    2008-06-01

    In this paper, we propose a multiresolution approach for surface reconstruction from clouds of unorganized points representing an object surface in 3-D space. The proposed method uses a set of mesh operators and simple rules for selective mesh refinement, with a strategy based on Kohonen's self-organizing map (SOM). Basically, a self-adaptive scheme is used for iteratively moving vertices of an initial simple mesh in the direction of the set of points, ideally the object boundary. Successive refinement and motion of vertices are applied leading to a more detailed surface, in a multiresolution, iterative scheme. Reconstruction was experimented on with several point sets, including different shapes and sizes. Results show generated meshes very close to object final shapes. We include measures of performance and discuss robustness.

  10. New Virtual Cutting Algorithms for 3D Surface Model Reconstructed from Medical Images

    WANG Wei-hong; QIN Xu-Jia

    2006-01-01

    This paper proposes a practical algorithms of plane cutting, stereo clipping and arbitrary cutting for 3D surface model reconstructed from medical images. In plane cutting and stereo clipping algorithms, the 3D model is cut by plane or polyhedron. Lists of edge and vertex in every cut plane are established. From these lists the boundary contours are created and their relationship of embrace is ascertained. The region closed by the contours is triangulated using Delaunay triangulation algorithm. Arbitrary cutting operation creates cutting curve interactively.The cut model still maintains its correct topology structure. With these operations,tissues inside can be observed easily and it can aid doctors to diagnose. The methods can also be used in surgery planning of radiotherapy.

  11. Robust affine-invariant feature points matching for 3D surface reconstruction of complex landslide scenes

    Stumpf, André; Malet, Jean-Philippe; Allemand, Pascal; Skupinski, Grzegorz; Deseilligny, Marc-Pierrot

    2013-04-01

    Multi-view stereo surface reconstruction from dense terrestrial photographs is being increasingly applied for geoscience applications such as quantitative geomorphology, and a number of different software solution and processing streamlines have been suggested. For image matching, camera self-calibration and bundle block adjustment, most approaches make use of scale-invariant feature transform (SIFT) to identify homologous points in multiple images. SIFT-like point matching is robust to apparent translation, rotation, and scaling of objects in multiple viewing geometries but the number of correctly identified matching points typically declines drastically with increasing angles between the viewpoints. For the application of multi-view stereo of complex landslide scenes, the viewing geometry is often constrained by the local topography and barriers such as rocks and vegetation occluding the target. Under such conditions it is not uncommon to encounter view angle differences of > 30% that hinder the image matching and eventually prohibit the joint estimation of the camera parameters from all views. Recently an affine invariant extension of the SIFT detector (ASIFT) has been demonstrated to provide more robust matches when large view-angle differences become an issue. In this study the ASIFT detector was adopted to detect homologous points in terrestrial photographs preceding 3D reconstruction of different parts (main scarp, toe) of the Super-Sauze landslide (Southern French Alps). 3D surface models for different time periods and different parts of the landslide were derived using the multi-view stereo framework implemented in MicMac (©IGN). The obtained 3D models were compared with reconstructions using the traditional SIFT detectors as well as alternative structure-from-motion implementations. An estimate of the absolute accuracy of the photogrammetric models was obtained through co-registration and comparison with high-resolution terrestrial LiDAR scans.

  12. 3D shape reconstruction of specular surfaces by using phase measuring deflectometry

    Zhou, Tian; Chen, Kun; Wei, Haoyun; Li, Yan

    2016-10-01

    The existing estimation methods for recovering height information from surface gradient are mainly divided into Modal and Zonal techniques. Since specular surfaces used in the industry always have complex and large areas, considerations must be given to both the improvement of measurement accuracy and the acceleration of on-line processing speed, which beyond the capacity of existing estimations. Incorporating the Modal and Zonal approaches into a unifying scheme, we introduce an improved 3D shape reconstruction version of specular surfaces based on Phase Measuring Deflectometry in this paper. The Modal estimation is firstly implemented to derive the coarse height information of the measured surface as initial iteration values. Then the real shape can be recovered utilizing a modified Zonal wave-front reconstruction algorithm. By combining the advantages of Modal and Zonal estimations, the proposed method simultaneously achieves consistently high accuracy and dramatically rapid convergence. Moreover, the iterative process based on an advanced successive overrelaxation technique shows a consistent rejection of measurement errors, guaranteeing the stability and robustness in practical applications. Both simulation and experimentally measurement demonstrate the validity and efficiency of the proposed improved method. According to the experimental result, the computation time decreases approximately 74.92% in contrast to the Zonal estimation and the surface error is about 6.68 μm with reconstruction points of 391×529 pixels of an experimentally measured sphere mirror. In general, this method can be conducted with fast convergence speed and high accuracy, providing an efficient, stable and real-time approach for the shape reconstruction of specular surfaces in practical situations.

  13. Region-Based 3d Surface Reconstruction Using Images Acquired by Low-Cost Unmanned Aerial Systems

    Lari, Z.; Al-Rawabdeh, A.; He, F.; Habib, A.; El-Sheimy, N.

    2015-08-01

    Accurate 3D surface reconstruction of our environment has become essential for an unlimited number of emerging applications. In the past few years, Unmanned Aerial Systems (UAS) are evolving as low-cost and flexible platforms for geospatial data collection that could meet the needs of aforementioned application and overcome limitations of traditional airborne and terrestrial mobile mapping systems. Due to their payload restrictions, these systems usually include consumer-grade imaging and positioning sensor which will negatively impact the quality of the collected geospatial data and reconstructed surfaces. Therefore, new surface reconstruction surfaces are needed to mitigate the impact of using low-cost sensors on the final products. To date, different approaches have been proposed to for 3D surface construction using overlapping images collected by imaging sensor mounted on moving platforms. In these approaches, 3D surfaces are mainly reconstructed based on dense matching techniques. However, generated 3D point clouds might not accurately represent the scanned surfaces due to point density variations and edge preservation problems. In order to resolve these problems, a new region-based 3D surface renostruction trchnique is introduced in this paper. This approach aims to generate a 3D photo-realistic model of individually scanned surfaces within the captured images. This approach is initiated by a Semi-Global dense Matching procedure is carried out to generate a 3D point cloud from the scanned area within the collected images. The generated point cloud is then segmented to extract individual planar surfaces. Finally, a novel region-based texturing technique is implemented for photorealistic reconstruction of the extracted planar surfaces. Experimental results using images collected by a camera mounted on a low-cost UAS demonstrate the feasibility of the proposed approach for photorealistic 3D surface reconstruction.

  14. REGION-BASED 3D SURFACE RECONSTRUCTION USING IMAGES ACQUIRED BY LOW-COST UNMANNED AERIAL SYSTEMS

    Z. Lari

    2015-08-01

    Full Text Available Accurate 3D surface reconstruction of our environment has become essential for an unlimited number of emerging applications. In the past few years, Unmanned Aerial Systems (UAS are evolving as low-cost and flexible platforms for geospatial data collection that could meet the needs of aforementioned application and overcome limitations of traditional airborne and terrestrial mobile mapping systems. Due to their payload restrictions, these systems usually include consumer-grade imaging and positioning sensor which will negatively impact the quality of the collected geospatial data and reconstructed surfaces. Therefore, new surface reconstruction surfaces are needed to mitigate the impact of using low-cost sensors on the final products. To date, different approaches have been proposed to for 3D surface construction using overlapping images collected by imaging sensor mounted on moving platforms. In these approaches, 3D surfaces are mainly reconstructed based on dense matching techniques. However, generated 3D point clouds might not accurately represent the scanned surfaces due to point density variations and edge preservation problems. In order to resolve these problems, a new region-based 3D surface renostruction trchnique is introduced in this paper. This approach aims to generate a 3D photo-realistic model of individually scanned surfaces within the captured images. This approach is initiated by a Semi-Global dense Matching procedure is carried out to generate a 3D point cloud from the scanned area within the collected images. The generated point cloud is then segmented to extract individual planar surfaces. Finally, a novel region-based texturing technique is implemented for photorealistic reconstruction of the extracted planar surfaces. Experimental results using images collected by a camera mounted on a low-cost UAS demonstrate the feasibility of the proposed approach for photorealistic 3D surface reconstruction.

  15. Evaluating Dense 3d Reconstruction Software Packages for Oblique Monitoring of Crop Canopy Surface

    Brocks, S.; Bareth, G.

    2016-06-01

    Crop Surface Models (CSMs) are 2.5D raster surfaces representing absolute plant canopy height. Using multiple CMSs generated from data acquired at multiple time steps, a crop surface monitoring is enabled. This makes it possible to monitor crop growth over time and can be used for monitoring in-field crop growth variability which is useful in the context of high-throughput phenotyping. This study aims to evaluate several software packages for dense 3D reconstruction from multiple overlapping RGB images on field and plot-scale. A summer barley field experiment located at the Campus Klein-Altendorf of University of Bonn was observed by acquiring stereo images from an oblique angle using consumer-grade smart cameras. Two such cameras were mounted at an elevation of 10 m and acquired images for a period of two months during the growing period of 2014. The field experiment consisted of nine barley cultivars that were cultivated in multiple repetitions and nitrogen treatments. Manual plant height measurements were carried out at four dates during the observation period. The software packages Agisoft PhotoScan, VisualSfM with CMVS/PMVS2 and SURE are investigated. The point clouds are georeferenced through a set of ground control points. Where adequate results are reached, a statistical analysis is performed.

  16. Virtual 3-D Facial Reconstruction

    Martin Paul Evison

    2000-06-01

    Full Text Available Facial reconstructions in archaeology allow empathy with people who lived in the past and enjoy considerable popularity with the public. It is a common misconception that facial reconstruction will produce an exact likeness; a resemblance is the best that can be hoped for. Research at Sheffield University is aimed at the development of a computer system for facial reconstruction that will be accurate, rapid, repeatable, accessible and flexible. This research is described and prototypical 3-D facial reconstructions are presented. Interpolation models simulating obesity, ageing and ethnic affiliation are also described. Some strengths and weaknesses in the models, and their potential for application in archaeology are discussed.

  17. Two Accelerating Techniques for 3D Reconstruction

    刘世霞; 胡事民; 孙家广

    2002-01-01

    Automatic reconstruction of 3D objects from 2D orthographic views has been a major research issue in CAD/CAM. In this paper, two accelerating techniques to improve the efficiency of reconstruction are presented. First, some pseudo elements are removed by depth and topology information as soon as the wire-frame is constructed, which reduces the searching space. Second, the proposed algorithm does not establish all possible surfaces in the process of generating 3D faces. The surfaces and edge loops are generated by using the relationship between the boundaries of 3D faces and their projections. This avoids the growth in combinational complexity of previous methods that have to check all possible pairs of 3D candidate edges.

  18. Forensic 3D Scene Reconstruction

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  19. Sieving Scattered 3D Point Clouds Using Clustering Analysis for 3D Surface Reconstruction%三维重建中散乱点云的聚类筛选与网格重建

    陈晓霞; 陈孝威

    2011-01-01

    During the course of 3d surface reconstruction, there are a large number of noises and isolated 3d points in raw 3d point clouds, which obtained from images. If we directly use these data to reconstruct surface, the algorithm will make surface sharply prominent and ineffective reconstruction. Because of above problems, a method that sieving 3d point clouds based on DBSCAN is presented in this paper, and then 3d surface is reconstructed using filtered 3d point clouds. Experiments show that good 3d surface reconstruction is obtained using this algorithm.%三维重建过程中获得的初始海量数据存在大量的噪声和孤立点,使得直接使用这些数据进行网格重建时,将会产生尖锐的凸出,导致重建效果不好,甚至是网格重建失败.针对以上问题,提出首先采用基于密度聚类的方法筛选三维点云,然后进行网格重建.实验表明本文算法获得了较好的网格重建效果.

  20. Scalable and Detail-Preserving Ground Surface Reconstruction from Large 3D Point Clouds Acquired by Mobile Mapping Systems

    Craciun, D.; Serna Morales, A.; Deschaud, J.-E.; Marcotegui, B.; Goulette, F.

    2014-08-01

    The currently existing mobile mapping systems equipped with active 3D sensors allow to acquire the environment with high sampling rates at high vehicle velocities. While providing an effective solution for environment sensing over large scale distances, such acquisition provides only a discrete representation of the geometry. Thus, a continuous map of the underlying surface must be built. Mobile acquisition introduces several constraints for the state-of-the-art surface reconstruction algorithms. Smoothing becomes a difficult task for recovering sharp depth features while avoiding mesh shrinkage. In addition, interpolation-based techniques are not suitable for noisy datasets acquired by Mobile Laser Scanning (MLS) systems. Furthermore, scalability is a major concern for enabling real-time rendering over large scale distances while preserving geometric details. This paper presents a fully automatic ground surface reconstruction framework capable to deal with the aforementioned constraints. The proposed method exploits the quasi-flat geometry of the ground throughout a morphological segmentation algorithm. Then, a planar Delaunay triangulation is applied in order to reconstruct the ground surface. A smoothing procedure eliminates high frequency peaks, while preserving geometric details in order to provide a regular ground surface. Finally, a decimation step is applied in order to cope with scalability constraints over large scale distances. Experimental results on real data acquired in large urban environments are presented and a performance evaluation with respect to ground truth measurements demonstrate the effectiveness of our method.

  1. The PRISM3D paleoenvironmental reconstruction

    Dowsett, H.; Robinson, M.; Haywood, A.M.; Salzmann, U.; Hill, Daniel; Sohl, L.E.; Chandler, M.; Williams, Mark; Foley, K.; Stoll, D.K.

    2010-01-01

    The Pliocene Research, Interpretation and Synoptic Mapping (PRISM) paleoenvironmental reconstruction is an internally consistent and comprehensive global synthesis of a past interval of relatively warm and stable climate. It is regularly used in model studies that aim to better understand Pliocene climate, to improve model performance in future climate scenarios, and to distinguish model-dependent climate effects. The PRISM reconstruction is constantly evolving in order to incorporate additional geographic sites and environmental parameters, and is continuously refined by independent research findings. The new PRISM three dimensional (3D) reconstruction differs from previous PRISM reconstructions in that it includes a subsurface ocean temperature reconstruction, integrates geochemical sea surface temperature proxies to supplement the faunal-based temperature estimates, and uses numerical models for the first time to augment fossil data. Here we describe the components of PRISM3D and describe new findings specific to the new reconstruction. Highlights of the new PRISM3D reconstruction include removal of Hudson Bay and the Great Lakes and creation of open waterways in locations where the current bedrock elevation is less than 25m above modern sea level, due to the removal of the West Antarctic Ice Sheet and the reduction of the East Antarctic Ice Sheet. The mid-Piacenzian oceans were characterized by a reduced east-west temperature gradient in the equatorial Pacific, but PRISM3D data do not imply permanent El Niño conditions. The reduced equator-to-pole temperature gradient that characterized previous PRISM reconstructions is supported by significant displacement of vegetation belts toward the poles, is extended into the Arctic Ocean, and is confirmed by multiple proxies in PRISM3D. Arctic warmth coupled with increased dryness suggests the formation of warm and salty paleo North Atlantic Deep Water (NADW) and a more vigorous thermohaline circulation system that may

  2. 3D Reconstruction Technique for Tomographic PIV

    姜楠; 包全; 杨绍琼

    2015-01-01

    Tomographic particle image velocimetry(Tomo-PIV) is a state-of-the-art experimental technique based on a method of optical tomography to achieve the three-dimensional(3D) reconstruction for three-dimensional three-component(3D-3C) flow velocity measurements. 3D reconstruction for Tomo-PIV is carried out herein. Meanwhile, a 3D simplified tomographic reconstruction model reduced from a 3D volume light inten-sity field with 2D projection images into a 2D Tomo-slice plane with 1D projecting lines, i.e., simplifying this 3D reconstruction into a problem of 2D Tomo-slice plane reconstruction, is applied thereafter. Two kinds of the most well-known algebraic reconstruction techniques, algebraic reconstruction technique(ART) and multiple algebraic reconstruction technique(MART), are compared as well. The principles of the two reconstruction algorithms are discussed in detail, which has been performed by a series of simulation images, yielding the corresponding recon-struction images that show different features between the ART and MART algorithm, and then their advantages and disadvantages are discussed. Further discussions are made for the standard particle image reconstruction when the background noise of the pre-initial particle image has been removed. Results show that the particle image recon-struction has been greatly improved. The MART algorithm is much better than the ART. Furthermore, the computa-tional analyses of two parameters(the particle density and the number of cameras), are performed to study their effects on the reconstruction. Lastly, the 3D volume particle field is reconstructed by using the improved algorithm based on the simplified 3D tomographic reconstruction model, which proves that the algorithm simplification is feasible and it can be applied to the reconstruction of 3D volume particle field in a Tomo-PIV system.

  3. Comparative assessment of 3D surface scanning systems in breast plastic and reconstructive surgery.

    Patete, Paolo; Eder, Maximilian; Raith, Stefan; Volf, Alexander; Kovacs, Laszlo; Baroni, Guido

    2013-10-01

    In this work, we compared accuracy, repeatability, and usability in breast surface imaging of 2 commercial surface scanning systems and a hand-held laser surface scanner prototype coupled with a patient's motion acquisition and compensation methodology. The accuracy of the scanners was assessed on an anthropomorphic phantom, and to evaluate the usability of the scanners on humans, thorax surface images of 3 volunteers were acquired. Both the intrascanner repeatability and the interscanner comparative accuracy were assessed. The results showed surface-to-surface distance errors inferior to 1 mm and to 2 mm, respectively, for the 2 commercial scanners and for the prototypical one. Moreover, comparable performances of the 3 scanners were found when used for acquiring the breast surface. On the whole, this study demonstrated that handheld laser surface scanners coupled with subject motion compensation methods lend themselves as competitive technologies for human body surface modeling.

  4. Matching Images to Models: Camera Calibration for 3-D Surface Reconstruction

    Morris, Robin D.; Smelyanskiy, Vadim N.; Cheeseman. Peter C.; Norvig, Peter (Technical Monitor)

    2001-01-01

    In a previous paper we described a system which recursively recovers a super-resolved three dimensional surface model from a set of images of the surface. In that paper we assumed that the camera calibration for each image was known. In this paper we solve two problems. Firstly, if an estimate of the surface is already known, the problem is to calibrate a new image relative to the existing surface model. Secondly, if no surface estimate is available, the relative camera calibration between the images in the set must be estimated. This will allow an initial surface model to be estimated. Results of both types of estimation are given.

  5. Reconstruction and analysis of shapes from 3D scans

    ter Haar, F.B.

    2009-01-01

    In this thesis we use 3D laser range scans for the acquisition, reconstruction, and analysis of 3D shapes. 3D laser range scanning has proven to be a fast and effective way to capture the surface of an object in a computer. Thousands of depth measurements represent a part of the surface geometry as

  6. Reconstruction and Analysis of Shapes from 3D Scans

    Haar, F.B. ter

    2009-01-01

    In this thesis, we measure 3D shapes with the use of 3D laser technology, a recent technology that combines physics, mathematics, and computer science to acquire the surface geometry of 3D shapes in the computer. We use this surface geometry to fully reconstruct real world shapes as computer models,

  7. 3-D Reconstruction From Satellite Images

    Denver, Troelz

    1999-01-01

    The aim of this project has been to implement a software system, that is able to create a 3-D reconstruction from two or more 2-D photographic images made from different positions. The height is determined from the disparity difference of the images. The general purpose of the system is mapping...... of planetary surfaces, but other purposes is considered as well. The system performance is measured with respect to the precision and the time consumption.The reconstruction process is divided into four major areas: Acquisition, calibration, matching/reconstruction and presentation. Each of these areas...... are treated individually. A detailed treatment of various lens distortions is required, in order to correct for these problems. This subject is included in the acquisition part. In the calibration part, the perspective distortion is removed from the images. Most attention has been paid to the matching problem...

  8. Quantitative Assessment of Variational Surface Reconstruction from Sparse Point Clouds in Freehand 3D Ultrasound Imaging during Image-Guided Tumor Ablation

    Shuangcheng Deng

    2016-04-01

    Full Text Available Surface reconstruction for freehand 3D ultrasound is used to provide 3D visualization of a VOI (volume of interest during image-guided tumor ablation surgery. This is a challenge because the recorded 2D B-scans are not only sparse but also non-parallel. To solve this issue, we established a framework to reconstruct the surface of freehand 3D ultrasound imaging in 2011. The key technique for surface reconstruction in that framework is based on variational interpolation presented by Greg Turk for shape transformation and is named Variational Surface Reconstruction (VSR. The main goal of this paper is to evaluate the quality of surface reconstructions, especially when the input data are extremely sparse point clouds from freehand 3D ultrasound imaging, using four methods: Ball Pivoting, Power Crust, Poisson, and VSR. Four experiments are conducted, and quantitative metrics, such as the Hausdorff distance, are introduced for quantitative assessment. The experiment results show that the performance of the proposed VSR method is the best of the four methods at reconstructing surface from sparse data. The VSR method can produce a close approximation to the original surface from as few as two contours, whereas the other three methods fail to do so. The experiment results also illustrate that the reproducibility of the VSR method is the best of the four methods.

  9. Automated Serial Sectioning for 3D Reconstruction

    Alkemper, Jen; Voorhees, Peter W.

    2003-01-01

    Some aspects of an apparatus and method for automated serial sectioning of a specimen of a solder, aluminum, or other relatively soft opaque material are discussed. The apparatus includes a small milling machine (micromiller) that takes precise, shallow cuts (increments of depth as small as 1 micron) to expose successive sections. A microscope equipped with an electronic camera, mounted in a fixed position on the micromiller, takes pictures of the newly exposed specimen surface at each increment of depth. The images are digitized, and the resulting data are subsequently processed to reconstruct three-dimensional (3D) features of the specimen.

  10. Facial recognition software success rates for the identification of 3D surface reconstructed facial images: implications for patient privacy and security.

    Mazura, Jan C; Juluru, Krishna; Chen, Joseph J; Morgan, Tara A; John, Majnu; Siegel, Eliot L

    2012-06-01

    Image de-identification has focused on the removal of textual protected health information (PHI). Surface reconstructions of the face have the potential to reveal a subject's identity even when textual PHI is absent. This study assessed the ability of a computer application to match research subjects' 3D facial reconstructions with conventional photographs of their face. In a prospective study, 29 subjects underwent CT scans of the head and had frontal digital photographs of their face taken. Facial reconstructions of each CT dataset were generated on a 3D workstation. In phase 1, photographs of the 29 subjects undergoing CT scans were added to a digital directory and tested for recognition using facial recognition software. In phases 2-4, additional photographs were added in groups of 50 to increase the pool of possible matches and the test for recognition was repeated. As an internal control, photographs of all subjects were tested for recognition against an identical photograph. Of 3D reconstructions, 27.5% were matched correctly to corresponding photographs (95% upper CL, 40.1%). All study subject photographs were matched correctly to identical photographs (95% lower CL, 88.6%). Of 3D reconstructions, 96.6% were recognized simply as a face by the software (95% lower CL, 83.5%). Facial recognition software has the potential to recognize features on 3D CT surface reconstructions and match these with photographs, with implications for PHI.

  11. 3D Reconstruction of NMR Images

    Peter Izak

    2007-01-01

    Full Text Available This paper introduces experiment of 3D reconstruction NMR images scanned from magnetic resonance device. There are described methods which can be used for 3D reconstruction magnetic resonance images in biomedical application. The main idea is based on marching cubes algorithm. For this task was chosen sophistication method by program Vision Assistant, which is a part of program LabVIEW.

  12. A dynamic 3D foot reconstruction system.

    Thabet, Ali K; Trucco, Emanuele; Salvi, Joaquim; Wang, Weijie; Abboud, Rami J

    2011-01-01

    Foot problems are varied and range from simple disorders through to complex diseases and joint deformities. Wherever possible, the use of insoles, or orthoses, is preferred over surgery. Current insole design techniques are based on static measurements of the foot, despite the fact that orthoses are prevalently used in dynamic conditions while walking or running. This paper presents the design and implementation of a structured-light prototype system providing dense three dimensional (3D) measurements of the foot in motion, and its use to show that foot measurements in dynamic conditions differ significantly from their static counterparts. The input to the system is a video sequence of a foot during a single step; the output is a 3D reconstruction of the plantar surface of the foot for each frame of the input. Engineering and clinical tests were carried out for the validation of the system. The accuracy of the system was found to be 0.34 mm with planar test objects. In tests with real feet, the system proved repeatable, with reconstruction differences between trials one week apart averaging 2.44 mm (static case) and 2.81 mm (dynamic case). Furthermore, a study was performed to compare the effective length of the foot between static and dynamic reconstructions using the 4D system. Results showed an average increase of 9 mm for the dynamic case. This increase is substantial for orthotics design, cannot be captured by a static system, and its subject-specific measurement is crucial for the design of effective foot orthoses.

  13. A New Approach for Realistic 3D Reconstruction of Planar Surfaces from Laser Scanning Data and Imagery Collected Onboard Modern Low-Cost Aerial Mapping Systems

    Zahra Lari

    2017-02-01

    Full Text Available Over the past few years, accurate 3D surface reconstruction using remotely-sensed data has been recognized as a prerequisite for different mapping, modelling, and monitoring applications. To fulfill the needs of these applications, necessary data are generally collected using various digital imaging systems. Among them, laser scanners have been acknowledged as a fast, accurate, and flexible technology for the acquisition of high density 3D spatial data. Despite their quick accessibility, the acquired 3D data using these systems does not provide semantic information about the nature of scanned surfaces. Hence, reliable processing techniques are employed to extract the required information for 3D surface reconstruction. Moreover, the extracted information from laser scanning data cannot be effectively utilized due to the lack of descriptive details. In order to provide a more realistic and accurate perception of the scanned scenes using laser scanning systems, a new approach for 3D reconstruction of planar surfaces is introduced in this paper. This approach aims to improve the interpretability of the extracted planar surfaces from laser scanning data using spectral information from overlapping imagery collected onboard modern low-cost aerial mapping systems, which are widely adopted nowadays. In this approach, the scanned planar surfaces using laser scanning systems are initially extracted through a novel segmentation procedure, and then textured using the acquired overlapping imagery. The implemented texturing technique, which intends to overcome the computational inefficiency of the previously-developed 3D reconstruction techniques, is performed in three steps. In the first step, the visibility of the extracted planar surfaces from laser scanning data within the collected images is investigated and a list of appropriate images for texturing each surface is established. Successively, an occlusion detection procedure is carried out to identify the

  14. 3D Equilibrium Reconstructions in DIII-D

    Lao, L. L.; Ferraro, N. W.; Strait, E. J.; Turnbull, A. D.; King, J. D.; Hirshman, H. P.; Lazarus, E. A.; Sontag, A. C.; Hanson, J.; Trevisan, G.

    2013-10-01

    Accurate and efficient 3D equilibrium reconstruction is needed in tokamaks for study of 3D magnetic field effects on experimentally reconstructed equilibrium and for analysis of MHD stability experiments with externally imposed magnetic perturbations. A large number of new magnetic probes have been recently installed in DIII-D to improve 3D equilibrium measurements and to facilitate 3D reconstructions. The V3FIT code has been in use in DIII-D to support 3D reconstruction and the new magnetic diagnostic design. V3FIT is based on the 3D equilibrium code VMEC that assumes nested magnetic surfaces. V3FIT uses a pseudo-Newton least-square algorithm to search for the solution vector. In parallel, the EFIT equilibrium reconstruction code is being extended to allow for 3D effects using a perturbation approach based on an expansion of the MHD equations. EFIT uses the cylindrical coordinate system and can include the magnetic island and stochastic effects. Algorithms are being developed to allow EFIT to reconstruct 3D perturbed equilibria directly making use of plasma response to 3D perturbations from the GATO, MARS-F, or M3D-C1 MHD codes. DIII-D 3D reconstruction examples using EFIT and V3FIT and the new 3D magnetic data will be presented. Work supported in part by US DOE under DE-FC02-04ER54698, DE-FG02-95ER54309 and DE-AC05-06OR23100.

  15. 3D Building Reconstruction Using Dense Photogrammetric Point Cloud

    Malihi, S.; Valadan Zoej, M. J.; Hahn, M.; Mokhtarzade, M.; Arefi, H.

    2016-06-01

    Three dimensional models of urban areas play an important role in city planning, disaster management, city navigation and other applications. Reconstruction of 3D building models is still a challenging issue in 3D city modelling. Point clouds generated from multi view images of UAV is a novel source of spatial data, which is used in this research for building reconstruction. The process starts with the segmentation of point clouds of roofs and walls into planar groups. By generating related surfaces and using geometrical constraints plus considering symmetry, a 3d model of building is reconstructed. In a refinement step, dormers are extracted, and their models are reconstructed. The details of the 3d reconstructed model are in LoD3 level, with respect to modelling eaves, fractions of roof and dormers.

  16. Three dimensional surface analyses of pubic symphyseal faces of contemporary Japanese reconstructed with 3D digitized scanner.

    Biwasaka, Hitoshi; Sato, Kei; Aoki, Yasuhiro; Kato, Hideaki; Maeno, Yoshitaka; Tanijiri, Toyohisa; Fujita, Sachiko; Dewa, Koji

    2013-09-01

    Three dimensional pubic bone images were analyzed to quantify some age-dependent morphological changes of the symphyseal faces of contemporary Japanese residents. The images were synthesized from 145 bone specimens with 3D measuring device. Phases of Suchey-Brooks system were determined on the 3D pubic symphyseal images without discrepancy from those carried out on the real bones because of the high fidelity. Subsequently, mean curvatures of the pubic symphyseal faces to examine concavo-convex condition of the surfaces were analyzed on the 3D images. Average values of absolute mean curvatures of phase 1 and 2 groups were higher than those of phase 3-6 ones, whereas the values were approximately constant over phase 3 presumably reflecting the inactivation of pubic faces over phase 3. Ratio of the concave areas increased gradually with progressing phase or age classes, although convex areas were predominant in every phase.

  17. Application of CT 3D reconstruction in diagnosing atlantoaxial subluxation

    段少银; 林清池; 庞瑞麟

    2004-01-01

    Objective:To evaluate and compare the diagnostic value in atlantoaxial subluxation by CT three-dimensional (3D) reconstruction.Methods:3D reconstruction fimdings of 41 patients with atlantoaxiai subluxation were retrospectively analyzed, and comparisons were made among images of transverse section, multiplanar reformorting (MPR), surface shade display (SSD), maximum intensity project (MIP), and volume rendering (VR). Results:Of 41 patients with atlantoaxial subluxation, 31 belonged to rotary dislocation, 5 antedislocation, and 5 hind dislocation. All the cases showed the dislocated joint panel of atlantoaxial articulation.Fifteen cases showed deviation of the odontoid process and 8 cases widened distance between the dens and anterior arch of the atlas. The dislocated joint panel of atlantoaxial articulation was more clearly seen with SSD-3D imaging than any other methods. Conclusions:Atlantoaxial subluxation can well be diagnosed by CT 3D reconstruction, in which SSD-3D imaging is optimal.

  18. Fully 3D GPU PET reconstruction

    Herraiz, J.L., E-mail: joaquin@nuclear.fis.ucm.es [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Espana, S. [Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA (United States); Cal-Gonzalez, J. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Vaquero, J.J. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Desco, M. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Unidad de Medicina y Cirugia Experimental, Hospital General Universitario Gregorio Maranon, Madrid (Spain); Udias, J.M. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain)

    2011-08-21

    Fully 3D iterative tomographic image reconstruction is computationally very demanding. Graphics Processing Unit (GPU) has been proposed for many years as potential accelerators in complex scientific problems, but it has not been used until the recent advances in the programmability of GPUs that the best available reconstruction codes have started to be implemented to be run on GPUs. This work presents a GPU-based fully 3D PET iterative reconstruction software. This new code may reconstruct sinogram data from several commercially available PET scanners. The most important and time-consuming parts of the code, the forward and backward projection operations, are based on an accurate model of the scanner obtained with the Monte Carlo code PeneloPET and they have been massively parallelized on the GPU. For the PET scanners considered, the GPU-based code is more than 70 times faster than a similar code running on a single core of a fast CPU, obtaining in both cases the same images. The code has been designed to be easily adapted to reconstruct sinograms from any other PET scanner, including scanner prototypes.

  19. 3D VIRTUAL RECONSTRUCTION OF ARCHAEOLOGICAL MONUMENTS

    2014-01-01

    3D Virtual Models are the future of the representation of the existing and destroyed architectural heritage. The term reconstruction defines the re-building of a monument to its state at the time of its history chosen for that particular representation. In recent years the evolution of the technology, has contributed significantly in many aspects of the field of cultural heritage preservation and recording. Techniques like digital image processing, digital orthophoto production, terrestrial l...

  20. A Feature-adaptive Subdivision Method for Real-time 3D Reconstruction of Repeated Topology Surfaces

    Lin, Jinhua; Wang, Yanjie; Sun, Honghai

    2017-03-01

    It's well known that rendering for a large number of triangles with GPU hardware tessellation has made great progress. However, due to the fixed nature of GPU pipeline, many off-line methods that perform well can not meet the on-line requirements. In this paper, an optimized Feature-adaptive subdivision method is proposed, which is more suitable for reconstructing surfaces with repeated cusps or creases. An Octree primitive is established in irregular regions where there are the same sharp vertices or creases, this method can find the neighbor geometry information quickly. Because of having the same topology structure between Octree primitive and feature region, the Octree feature points can match the arbitrary vertices in feature region more precisely. In the meanwhile, the patches is re-encoded in the Octree primitive by using the breadth-first strategy, resulting in a meta-table which allows for real-time reconstruction by GPU hardware tessellation unit. There is only one feature region needed to be calculated under Octree primitive, other regions with the same repeated feature generate their own meta-table directly, the reconstruction time is saved greatly for this step. With regard to the meshes having a large number of repeated topology feature, our algorithm improves the subdivision time by 17.575% and increases the average frame drawing time by 0.2373 ms compared to the traditional FAS (Feature-adaptive Subdivision), at the same time the model can be reconstructed in a watertight manner.

  1. Rapidly 3D Texture Reconstruction Based on Oblique Photography

    ZHANG Chunsen

    2015-07-01

    Full Text Available This paper proposes a city texture fast reconstruction method based on aerial tilt image for reconstruction of three-dimensional city model. Based on the photogrammetry and computer vision theory and using the city building digital surface model obtained by prior treatment, through collinear equation calculation geometric projection of object and image space, to obtain the three-dimensional information and texture information of the structure and through certain the optimal algorithm selecting the optimal texture on the surface of the object, realize automatic extraction of the building side texture and occlusion handling of the dense building texture. The real image texture reconstruction results show that: the method to the 3D city model texture reconstruction has the characteristics of high degree of automation, vivid effect and low cost and provides a means of effective implementation for rapid and widespread real texture rapid reconstruction of city 3D model.

  2. 3D reconstruction of feature point on object surface from a single image%特征光斑单目视觉空间定位方法

    霍炬; 仲小清; 杨明

    2011-01-01

    For the design and development of a vision sensor for the ground test,a method of 3D reconstruction of feature point on large scale object surface from a single image is proposed.By establishing the math model of the 3D coordinate of feature point on the object surface and using the spatial ray through feature point,the 3D coordinate of the feature point can be determined using single image.According to the characteristics,the object surface can be classified into three types: high order surface type,block plane type and block surface type,while the corresponding location methods are introduced.The accuracy of three different 3D reconstruction methods is compared by simulation experiments.By the measurement precision of 1/10 000 in the range of 8 000 mm×8 000 mm,it is proved that the proposed method is suitable for 3D reconstruction of feature point on large scale object surface.%为了满足地面试验中运动目标位姿参数视觉测量系统的研制需求,基于单目视觉原理设计了大视场条件下实际平面上特征光斑的精确空间定位方法.建立了特征光斑的成像模型,给出了实际平面对特征光斑空间位置的约束,进而提出了特征光斑的单目视觉空间定位方法,并依据实际平面的特点设计了高阶曲面型、分块平面型和分块曲面型等三种类型实际平面上特征光斑空间定位的具体实现方法.所提方法可以满足8 000 mm×8 000 mm视场范围内特征光斑的空间定位需求,相对定位误差小于1/10 000.

  3. 3D reconstruction of tensors and vectors

    Defrise, Michel; Gullberg, Grant T.

    2005-02-17

    Here we have developed formulations for the reconstruction of 3D tensor fields from planar (Radon) and line-integral (X-ray) projections of 3D vector and tensor fields. Much of the motivation for this work is the potential application of MRI to perform diffusion tensor tomography. The goal is to develop a theory for the reconstruction of both Radon planar and X-ray or line-integral projections because of the flexibility of MRI to obtain both of these type of projections in 3D. The development presented here for the linear tensor tomography problem provides insight into the structure of the nonlinear MRI diffusion tensor inverse problem. A particular application of tensor imaging in MRI is the potential application of cardiac diffusion tensor tomography for determining in vivo cardiac fiber structure. One difficulty in the cardiac application is the motion of the heart. This presents a need for developing future theory for tensor tomography in a motion field. This means developing a better understanding of the MRI signal for diffusion processes in a deforming media. The techniques developed may allow the application of MRI tensor tomography for the study of structure of fiber tracts in the brain, atherosclerotic plaque, and spine in addition to fiber structure in the heart. However, the relations presented are also applicable to other fields in medical imaging such as diffraction tomography using ultrasound. The mathematics presented can also be extended to exponential Radon transform of tensor fields and to other geometric acquisitions such as cone beam tomography of tensor fields.

  4. Photogrammetric 3D reconstruction using mobile imaging

    Fritsch, Dieter; Syll, Miguel

    2015-03-01

    In our paper we demonstrate the development of an Android Application (AndroidSfM) for photogrammetric 3D reconstruction that works on smartphones and tablets likewise. The photos are taken with mobile devices, and can thereafter directly be calibrated using standard calibration algorithms of photogrammetry and computer vision, on that device. Due to still limited computing resources on mobile devices, a client-server handshake using Dropbox transfers the photos to the sever to run AndroidSfM for the pose estimation of all photos by Structure-from-Motion and, thereafter, uses the oriented bunch of photos for dense point cloud estimation by dense image matching algorithms. The result is transferred back to the mobile device for visualization and ad-hoc on-screen measurements.

  5. 3D near-to-surface conductivity reconstruction by inversion of VETEM data using the distorted Born iterative method

    Wang, G.L.; Chew, W.C.; Cui, T.J.; Aydiner, A.A.; Wright, D.L.; Smith, D.V.

    2004-01-01

    Three-dimensional (3D) subsurface imaging by using inversion of data obtained from the very early time electromagnetic system (VETEM) was discussed. The study was carried out by using the distorted Born iterative method to match the internal nonlinear property of the 3D inversion problem. The forward solver was based on the total-current formulation bi-conjugate gradient-fast Fourier transform (BCCG-FFT). It was found that the selection of regularization parameter follow a heuristic rule as used in the Levenberg-Marquardt algorithm so that the iteration is stable.

  6. Automatic Texture Optimization for 3D Urban Reconstruction

    LI Ming

    2017-03-01

    Full Text Available In order to solve the problem of texture optimization in 3D city reconstruction by using multi-lens oblique images, the paper presents a method of seamless texture model reconstruction. At first, it corrects the radiation information of images by camera response functions and image dark channel. Then, according to the corresponding relevance between terrain triangular mesh surface model to image, implements occlusion detection by sparse triangulation method, and establishes the triangles' texture list of visible. Finally, combines with triangles' topology relationship in 3D triangular mesh surface model and means and variances of image, constructs a graph-cuts-based texture optimization algorithm under the framework of MRF(Markov random filed, to solve the discrete label problem of texture optimization selection and clustering, ensures the consistency of the adjacent triangles in texture mapping, achieves the seamless texture reconstruction of city. The experimental results verify the validity and superiority of our proposed method.

  7. Influence of Head Motion on the Accuracy of 3D Reconstruction with Cone-Beam CT: Landmark Identification Errors in Maxillofacial Surface Model

    Song, Jin-Myoung; Cho, Jin-Hyoung

    2016-01-01

    Purpose The purpose of this study was to investigate the influence of head motion on the accuracy of three-dimensional (3D) reconstruction with cone-beam computed tomography (CBCT) scan. Materials and Methods Fifteen dry skulls were incorporated into a motion controller which simulated four types of head motion during CBCT scan: 2 horizontal rotations (to the right/to the left) and 2 vertical rotations (upward/downward). Each movement was triggered to occur at the start of the scan for 1 second by remote control. Four maxillofacial surface models with head motion and one control surface model without motion were obtained for each skull. Nine landmarks were identified on the five maxillofacial surface models for each skull, and landmark identification errors were compared between the control model and each of the models with head motion. Results Rendered surface models with head motion were similar to the control model in appearance; however, the landmark identification errors showed larger values in models with head motion than in the control. In particular, the Porion in the horizontal rotation models presented statistically significant differences (P CBCT scan might cause landmark identification errors on the 3D surface model in relation to the direction of the scanner rotation. Clinicians should take this into consideration to prevent patient movement during CBCT scan, particularly horizontal movement. PMID:27065238

  8. 医学图像三维表面重建分叉曲面的数学形态学研究%The Mathematical Morphologic Research in Diverging Curved Surface of 3D Surface Reconstruction

    鲍苏苏; 林斌

    2003-01-01

    In the medical 3D Reconstruction, 3D object surface is reconstructed, by making use of the traditional slice-based reconstruction method. Due to the still existing problems, such as contour pairing, diverging surface,contour pair patching, etc. In this paper, the new methods are proposed for the problem solving. The contour pairing is carried out with overlapping. The diverging curved surface is decomposed with mathematical morphology. The boundaries generated by the morphologic operation are that of the diverging surfaces. The middle layer generated bythe lower layer and the upper layer is not to insert into the two layers but only to join in one of the two layer. The contour mosaic is patched with triangles to form the surface after the polygons are simplitied. The triangles areconstructed under the criterion of the shortest diagonal.

  9. 新型三维激光扫描系统曲面重构技术%Surface reconstruction techniques for a novel 3D laser scanning system

    王文标; 吴德烽; 马孜; 李爱国; 汪洋

    2011-01-01

    The existed reverse engineering equipments are expensive and of low speed, a novel 3D laser free surface scanning system was developed, which had fast scanning speed and of low cost.As for the surface reconstruction part in the proposed system, two surface reconstruction schemes were presented based on two types of artificial neural network, namely, radial basis function neural network (RBFNN)and multiperceptron layer neural network (MLPNN).The X and Y coordinates of point cloud data were chosen as network input while the Z coordinate was chosen as network output.Comparison is made between these two approaches.Experimental results demonstrate that the accuracy of RBFNN for scattered point cloud surface reconstruction is higher than MLPNN.However, more neurons in hidden layer are needed for RBFNN than MLPNN.%为了克服现有逆向工程装备价格昂贵且不能满足实时测量的缺点,提出了一种新型成本低、扫描速度快的三维激光自由曲面扫描系统.针对该系统的曲面重构问题,提出神经网络曲面重构方案,网络的输入选取所获得的点云数据的X、Y坐标,网络的输出则选取点云数据的Z坐标.比较了径向基神经网络(RBFNN)和多层前馈神经网络(MLPNN)两种典型神经网络曲面重构方案的优缺点.实验结果表明:RBFNN对于离散点云的曲面重构精度比MLPNN重构的精度高,但RBFNN较MLPNN 所需的隐层神经元个数多.

  10. Influence of Head Motion on the Accuracy of 3D Reconstruction with Cone-Beam CT: Landmark Identification Errors in Maxillofacial Surface Model.

    Kyung-Min Lee

    Full Text Available The purpose of this study was to investigate the influence of head motion on the accuracy of three-dimensional (3D reconstruction with cone-beam computed tomography (CBCT scan.Fifteen dry skulls were incorporated into a motion controller which simulated four types of head motion during CBCT scan: 2 horizontal rotations (to the right/to the left and 2 vertical rotations (upward/downward. Each movement was triggered to occur at the start of the scan for 1 second by remote control. Four maxillofacial surface models with head motion and one control surface model without motion were obtained for each skull. Nine landmarks were identified on the five maxillofacial surface models for each skull, and landmark identification errors were compared between the control model and each of the models with head motion.Rendered surface models with head motion were similar to the control model in appearance; however, the landmark identification errors showed larger values in models with head motion than in the control. In particular, the Porion in the horizontal rotation models presented statistically significant differences (P < .05. Statistically significant difference in the errors between the right and left side landmark was present in the left side rotation which was opposite direction to the scanner rotation (P < .05.Patient movement during CBCT scan might cause landmark identification errors on the 3D surface model in relation to the direction of the scanner rotation. Clinicians should take this into consideration to prevent patient movement during CBCT scan, particularly horizontal movement.

  11. Reconstruction and 3D visualisation based on objective real 3D based documentation.

    Bolliger, Michael J; Buck, Ursula; Thali, Michael J; Bolliger, Stephan A

    2012-09-01

    Reconstructions based directly upon forensic evidence alone are called primary information. Historically this consists of documentation of findings by verbal protocols, photographs and other visual means. Currently modern imaging techniques such as 3D surface scanning and radiological methods (computer tomography, magnetic resonance imaging) are also applied. Secondary interpretation is based on facts and the examiner's experience. Usually such reconstructive expertises are given in written form, and are often enhanced by sketches. However, narrative interpretations can, especially in complex courses of action, be difficult to present and can be misunderstood. In this report we demonstrate the use of graphic reconstruction of secondary interpretation with supporting pictorial evidence, applying digital visualisation (using 'Poser') or scientific animation (using '3D Studio Max', 'Maya') and present methods of clearly distinguishing between factual documentation and examiners' interpretation based on three cases. The first case involved a pedestrian who was initially struck by a car on a motorway and was then run over by a second car. The second case involved a suicidal gunshot to the head with a rifle, in which the trigger was pushed with a rod. The third case dealt with a collision between two motorcycles. Pictorial reconstruction of the secondary interpretation of these cases has several advantages. The images enable an immediate overview, give rise to enhanced clarity, and compel the examiner to look at all details if he or she is to create a complete image.

  12. Investigating 3d Reconstruction Methods for Small Artifacts

    Evgenikou, V.; Georgopoulos, A.

    2015-02-01

    Small artifacts have always been a real challenge when it comes to 3D modelling. They usually present severe difficulties for their 3D reconstruction. Lately, the demand for the production of 3D models of small artifacts, especially in the cultural heritage domain, has dramatically increased. As with many cases, there are no specifications and standards for this task. This paper investigates the efficiency of several mainly low cost methods for 3D model production of such small artifacts. Moreover, the material, the color and the surface complexity of these objects id also investigated. Both image based and laser scanning methods have been considered as alternative data acquisition methods. The evaluation has been confined to the 3D meshes, as texture depends on the imaging properties, which are not investigated in this project. The resulting meshes have been compared to each other for their completeness, and accuracy. It is hoped that the outcomes of this investigation will be useful to researchers who are planning to embark into mass production of 3D models of small artifacts.

  13. INVESTIGATING 3D RECONSTRUCTION METHODS FOR SMALL ARTIFACTS

    V. Evgenikou

    2015-02-01

    Full Text Available Small artifacts have always been a real challenge when it comes to 3D modelling. They usually present severe difficulties for their 3D reconstruction. Lately, the demand for the production of 3D models of small artifacts, especially in the cultural heritage domain, has dramatically increased. As with many cases, there are no specifications and standards for this task. This paper investigates the efficiency of several mainly low cost methods for 3D model production of such small artifacts. Moreover, the material, the color and the surface complexity of these objects id also investigated. Both image based and laser scanning methods have been considered as alternative data acquisition methods. The evaluation has been confined to the 3D meshes, as texture depends on the imaging properties, which are not investigated in this project. The resulting meshes have been compared to each other for their completeness, and accuracy. It is hoped that the outcomes of this investigation will be useful to researchers who are planning to embark into mass production of 3D models of small artifacts.

  14. Structured Light-Based 3D Reconstruction System for Plants.

    Nguyen, Thuy Tuong; Slaughter, David C; Max, Nelson; Maloof, Julin N; Sinha, Neelima

    2015-07-29

    Camera-based 3D reconstruction of physical objects is one of the most popular computer vision trends in recent years. Many systems have been built to model different real-world subjects, but there is lack of a completely robust system for plants. This paper presents a full 3D reconstruction system that incorporates both hardware structures (including the proposed structured light system to enhance textures on object surfaces) and software algorithms (including the proposed 3D point cloud registration and plant feature measurement). This paper demonstrates the ability to produce 3D models of whole plants created from multiple pairs of stereo images taken at different viewing angles, without the need to destructively cut away any parts of a plant. The ability to accurately predict phenotyping features, such as the number of leaves, plant height, leaf size and internode distances, is also demonstrated. Experimental results show that, for plants having a range of leaf sizes and a distance between leaves appropriate for the hardware design, the algorithms successfully predict phenotyping features in the target crops, with a recall of 0.97 and a precision of 0.89 for leaf detection and less than a 13-mm error for plant size, leaf size and internode distance.

  15. Structured Light-Based 3D Reconstruction System for Plants

    Thuy Tuong Nguyen

    2015-07-01

    Full Text Available Camera-based 3D reconstruction of physical objects is one of the most popular computer vision trends in recent years. Many systems have been built to model different real-world subjects, but there is lack of a completely robust system for plants. This paper presents a full 3D reconstruction system that incorporates both hardware structures (including the proposed structured light system to enhance textures on object surfaces and software algorithms (including the proposed 3D point cloud registration and plant feature measurement. This paper demonstrates the ability to produce 3D models of whole plants created from multiple pairs of stereo images taken at different viewing angles, without the need to destructively cut away any parts of a plant. The ability to accurately predict phenotyping features, such as the number of leaves, plant height, leaf size and internode distances, is also demonstrated. Experimental results show that, for plants having a range of leaf sizes and a distance between leaves appropriate for the hardware design, the algorithms successfully predict phenotyping features in the target crops, with a recall of 0.97 and a precision of 0.89 for leaf detection and less than a 13-mm error for plant size, leaf size and internode distance.

  16. 3D reconstruction of SEM images by use of optical photogrammetry software.

    Eulitz, Mona; Reiss, Gebhard

    2015-08-01

    Reconstruction of the three-dimensional (3D) surface of an object to be examined is widely used for structure analysis in science and many biological questions require information about their true 3D structure. For Scanning Electron Microscopy (SEM) there has been no efficient non-destructive solution for reconstruction of the surface morphology to date. The well-known method of recording stereo pair images generates a 3D stereoscope reconstruction of a section, but not of the complete sample surface. We present a simple and non-destructive method of 3D surface reconstruction from SEM samples based on the principles of optical close range photogrammetry. In optical close range photogrammetry a series of overlapping photos is used to generate a 3D model of the surface of an object. We adapted this method to the special SEM requirements. Instead of moving a detector around the object, the object itself was rotated. A series of overlapping photos was stitched and converted into a 3D model using the software commonly used for optical photogrammetry. A rabbit kidney glomerulus was used to demonstrate the workflow of this adaption. The reconstruction produced a realistic and high-resolution 3D mesh model of the glomerular surface. The study showed that SEM micrographs are suitable for 3D reconstruction by optical photogrammetry. This new approach is a simple and useful method of 3D surface reconstruction and suitable for various applications in research and teaching.

  17. [Potentials of 3D-modeling in reconstructive orbital surgery].

    Butsan, S B; Khokhlachev, S B; Ĭigitaliev, Sh N; Zaiakin, Ia A

    2012-01-01

    A technique of bone reconstructive surgery of orbitofrontonasomalar region using 3D-modeling based on multispiral computer tomography data is presented. The efficacy of intraoperative templates created using 3D-modeling was showed for harvesting and modeling of bone calvarial autografts. The steps of reconstructive procedure are explained in details for repair of medial and inferior orbital fractures.

  18. 3D Reconstruction by Kinect Sensor:A Brief Review

    LI Shi-rui; TAO Ke-lu; WANG Si-yuan; LI Hai-yang; CAO Wei-guo; LI Hua

    2014-01-01

    While Kinect was originally designed as a motion sensing input device of the gaming console Microsoft Xbox 360 for gaming purposes, it’s easy-to-use, low-cost, reliability, speed of the depth measurement and relatively high quality of depth measurement make it can be used for 3D reconstruction. It could make 3D scanning technology more accessible to everyday users and turn 3D reconstruction models into much widely used asset for many applications. In this paper, we focus on Kinect 3D reconstruction.

  19. 3D scene reconstruction based on 3D laser point cloud combining UAV images

    Liu, Huiyun; Yan, Yangyang; Zhang, Xitong; Wu, Zhenzhen

    2016-03-01

    It is a big challenge capturing and modeling 3D information of the built environment. A number of techniques and technologies are now in use. These include GPS, and photogrammetric application and also remote sensing applications. The experiment uses multi-source data fusion technology for 3D scene reconstruction based on the principle of 3D laser scanning technology, which uses the laser point cloud data as the basis and Digital Ortho-photo Map as an auxiliary, uses 3DsMAX software as a basic tool for building three-dimensional scene reconstruction. The article includes data acquisition, data preprocessing, 3D scene construction. The results show that the 3D scene has better truthfulness, and the accuracy of the scene meet the need of 3D scene construction.

  20. The PRISM3D paleoenvironmental reconstruction

    H. Dowsett; M. Robinson; Haywood, A. M.; Salzmann, U.; Hill, Daniel; L. E. Sohl; Chandler, M.; Williams, Mark; Foley, K; D. K. Stoll

    2010-01-01

    The Pliocene Research, Interpretation and Synoptic Mapping (PRISM) paleoenvironmental reconstruction is an internally consistent and comprehensive global synthesis of a past interval of relatively warm and stable climate. It is regularly used in model studies that aim to better understand Pliocene climate, to improve model performance in future climate scenarios, and to distinguish model-dependent climate effects. The PRISM reconstruction is constantly evolving in order to incorporate additio...

  1. Array antenna diagnostics with the 3D reconstruction algorithm

    Cappellin, Cecilia; Meincke, Peter; Pivnenko, Sergey;

    2012-01-01

    The 3D reconstruction algorithm is applied to a slotted waveguide array measured at the DTU-ESA Spherical Near-Field Antenna Test Facility. One slot of the array is covered by conductive tape and an error is present in the array excitation. Results show the accuracy obtainable by the 3D...... reconstruction algorithm. Considerations on the measurement sampling, the obtainable spatial resolution, and the possibility of taking full advantage of the reconstruction geometry are provided....

  2. Accuracy and benefits of 3D bone surface modelling: a comparison of two methods of surface data acquisition reconstructed by laser scanning and computed tomography outputs.

    Brzobohatá, Hana; Prokop, Josef; Horák, Martin; Jancárek, Alexandr; Velemínská, Jana

    2012-09-01

    The aim of this study is to compare two different methods of frontal bone surface model acquisition. Three dimensional models acquired by laser scanning were compared with models of the same bones acquired by virtual replicas reconstructed from a sequence of computed tomography (CT) images. The influence of volumetric CT data processing (namely thresholding), which immediately preceded the generation of the three-dimensional surface model, was also considered and explored in detail in one sample. Despite identifying certain areas where both models showed deviations across all samples, their conformity can be generally classified as satisfactory, and the differences can be regarded as minimal. The average deviation of registered surface models was 0.27 mm for 90% of the data, and its value was therefore very close to the resolution of the laser scanner used.

  3. Fully Automatic 3D Reconstruction of Histological Images

    Bagci, Ulas

    2009-01-01

    In this paper, we propose a computational framework for 3D volume reconstruction from 2D histological slices using registration algorithms in feature space. To improve the quality of reconstructed 3D volume, first, intensity variations in images are corrected by an intensity standardization process which maps image intensity scale to a standard scale where similar intensities correspond to similar tissues. Second, a subvolume approach is proposed for 3D reconstruction by dividing standardized slices into groups. Third, in order to improve the quality of the reconstruction process, an automatic best reference slice selection algorithm is developed based on an iterative assessment of image entropy and mean square error of the registration process. Finally, we demonstrate that the choice of the reference slice has a significant impact on registration quality and subsequent 3D reconstruction.

  4. 3D Objects Reconstruction from Image Data

    Cír, Filip

    2008-01-01

    Tato práce se zabývá 3D rekonstrukcí z obrazových dat. Jsou popsány možnosti a přístupy k optickému skenování. Ruční optický 3D skener se skládá z kamery a zdroje čárového laseru, který je vzhledem ke kameře upevněn pod určitým úhlem. Je navržena vhodná podložka se značkami a je popsán algoritmus pro jejich real-time detekci. Po detekci značek lze vypočítat pozici a orientaci kamery. Na závěr je popsána detekce laseru a postup při výpočtu bodů na povrchu objektu pomocí triangulace. This pa...

  5. 3D Reconstruction in Spiral Multislice CT Scans

    M. Ghafouri

    2005-08-01

    Full Text Available Introduction & Background: The rapid development of spiral (helical computed tomography (CT has resulted in exciting new applications for CT. One of these applications, three-dimensional (3D CT with volume ren-dering, is now a major area of clinical and academic interest. One of the greatest advantages of spiral CT with 3D volume rendering is that it provides all the necessary information in a single radiologic study (and there-fore at the lowest possible price in cases that previously required two or more studies. Three-dimensional vol-ume rendering generates clinically accurate and immediately available images from the full CT data set with-out extensive editing. It allows the radiologist and clinician to address specific questions concerning patient care by interactively exploring different aspects of the data set. Three-dimensional images integrate a series of axial CT sections into a form that is often easier to interpret than the sections themselves and can be made to appear similar to other more familiar images such as catheter angiograms. The data are organized into a 3D matrix of volume elements (voxels. The screen of the computer monitor is a 2D-surface composed of discrete picture elements (pixels. Presenting what is stored in memory (ie, floating within the monitor on a 2D-screen is a challenge, but it is the very problem that 3D reconstruc-tion software has creatively solved. Voxel selection is usually accomplished by projecting lines (rays through the data set that correspond to the pixel matrix of the desired 2D image. Differences in the images produced with various 3D rendering techniques are the result of variations in how voxels are selected and weighted. In this article, I compare 3D volume rendering of spiral CT data with other rendering techniques (shaded surface display, maximum intensity projection and present a brief history of 3D volume rendering and discuss the im-plementation of this promising technology in terms of

  6. Reconstruction of 3-D digital cores using a hybrid method

    Liu Xuefeng; Sun Jianmeng; Wang Haitao

    2009-01-01

    A 3-D digital core describes the pore space microstructure of rocks. An X-ray micro CT scan is the most accurate and direct but costly method to obtain a 3-D digital core. In this study, we propose a hybrid method which combines sedimentation simulation and simulated annealing (SA) method to generate 3-D digital cores based on 2-D images of rocks. The method starts with the sedimentation simulation to build a 3-D digital core, which is the initial configuration for the SA method. We update the initial digital core using the SA method to match the auto-correlation function of the 2-D rock image and eventually build the final 3-D digital core. Compared with the typical SA method, the hybrid method has significantly reduced the computation time. Local porosity theory is applied to quantitatively compare the reconstructed 3-D digital cores with the X-ray micro CT 3-D images. The results indicate that the 3-D digital cores reconstructed by the hybrid method have homogeneity and geometric connectivity similar to those of the X-ray micro CT image. The formation factors and permeabilities of the reconstructed 3-D digital cores are estimated using the finite element method (FEM) and lattice Boltzmann method (LBM), respectively. The simulated results are in good agreement with the experimental measurements. Comparison of the simulation results suggests that the digital cores reconstructed by the hybrid method more closely reflect the true transport properties than the typical SA method alone.

  7. Interior Reconstruction Using the 3d Hough Transform

    Dumitru, R.-C.; Borrmann, D.; Nüchter, A.

    2013-02-01

    Laser scanners are often used to create accurate 3D models of buildings for civil engineering purposes, but the process of manually vectorizing a 3D point cloud is time consuming and error-prone (Adan and Huber, 2011). Therefore, the need to characterize and quantify complex environments in an automatic fashion arises, posing challenges for data analysis. This paper presents a system for 3D modeling by detecting planes in 3D point clouds, based on which the scene is reconstructed at a high architectural level through removing automatically clutter and foreground data. The implemented software detects openings, such as windows and doors and completes the 3D model by inpainting.

  8. A Pipeline of 3D Scene Reconstruction from Point Clouds

    Zhu, Lingli

    2015-01-01

    3D technologies are becoming increasingly popular as their applications in industrial, consumer, entertainment, healthcare, education, and governmental increase in number. According to market predictions, the total 3D modeling and mapping market is expected to grow from $1.1 billion in 2013 to $7.7 billion by 2018. Thus, 3D modeling techniques for different data sources are urgently needed. This thesis addresses techniques for automated point cloud classification and the reconstruction of ...

  9. Dimensionality Reduction of Laplacian Embedding for 3D Mesh Reconstruction

    Mardhiyah, I.; Madenda, S.; Salim, R. A.; Wiryana, I. M.

    2016-06-01

    Laplacian eigenbases are the important thing that we have to process from 3D mesh information. The information of geometric 3D mesh are include vertices locations and the connectivity of graph. Due to spectral analysis, geometric 3D mesh for large and sparse graphs with thousands of vertices is not practical to compute all the eigenvalues and eigenvector. Because of that, in this paper we discuss how to build 3D mesh reconstruction by reducing dimensionality on null eigenvalue but retain the corresponding eigenvector of Laplacian Embedding to simplify mesh processing. The result of reducing information should have to retained the connectivity of graph. The advantages of dimensionality reduction is for computational eficiency and problem simplification. Laplacian eigenbases is the point of dimensionality reduction for 3D mesh reconstruction. In this paper, we show how to reconstruct geometric 3D mesh after approximation step of 3D mesh by dimensionality reduction. Dimensionality reduction shown by Laplacian Embedding matrix. Furthermore, the effectiveness of 3D mesh reconstruction method will evaluated by geometric error, differential error, and final error. Numerical approximation error of our result are small and low complexity of computational.

  10. Nonlaser-based 3D surface imaging

    Lu, Shin-yee; Johnson, R.K.; Sherwood, R.J. [Lawrence Livermore National Lab., CA (United States)

    1994-11-15

    3D surface imaging refers to methods that generate a 3D surface representation of objects of a scene under viewing. Laser-based 3D surface imaging systems are commonly used in manufacturing, robotics and biomedical research. Although laser-based systems provide satisfactory solutions for most applications, there are situations where non laser-based approaches are preferred. The issues that make alternative methods sometimes more attractive are: (1) real-time data capturing, (2) eye-safety, (3) portability, and (4) work distance. The focus of this presentation is on generating a 3D surface from multiple 2D projected images using CCD cameras, without a laser light source. Two methods are presented: stereo vision and depth-from-focus. Their applications are described.

  11. 3D Reconstruction of Irregular Buildings and Buddha Statues

    Zhang, K.; Li, M.-j.

    2014-04-01

    Three-dimensional laser scanning could acquire object's surface data quickly and accurately. However, the post-processing of point cloud is not perfect and could be improved. Based on the study of 3D laser scanning technology, this paper describes the details of solutions to modelling irregular ancient buildings and Buddha statues in Jinshan Temple, which aiming at data acquisition, modelling and texture mapping, etc. In order to modelling irregular ancient buildings effectively, the structure of each building is extracted manually by point cloud and the textures are mapped by the software of 3ds Max. The methods clearly combine 3D laser scanning technology with traditional modelling methods, and greatly improves the efficiency and accuracy of the ancient buildings restored. On the other hand, the main idea of modelling statues is regarded as modelling objects in reverse engineering. The digital model of statues obtained is not just vivid, but also accurate in the field of surveying and mapping. On this basis, a 3D scene of Jinshan Temple is reconstructed, which proves the validity of the solutions.

  12. 3D surface reconstruction for facial model from tomographic images based on multi-view visibility detection%基于多视点可见性检测的面皮三维表面重建

    贺毅岳; 耿国华; 茹少峰; 贾甲; 贺小伟

    2013-01-01

    提出了一种面皮三维表面重建方法SRMFM(surface reconstruction method for facial model),首先采用MC算法重建面皮三维模型,在Frankfurt坐标校正基础上建立面皮体素模型,然后采用基于广度优先遍历的多视点可见性检测算法提取表面顶点,创建面皮三维表面模型.可从断层图像自动、快速地重建出保持表面细节特征的面皮三维表面模型.%A 3D SRMFM (surface reconstruction method for facial model) is proposed,which employs Marching Cubes algorithm to construct 3D facial model,and builds facial voxel model after Frankfurt coordinate correction is accomplished,then applies MVD (multi-view visibility detection) based on BFS (breadth first search) to extract external surface vertexes from which facial surface model is constructed finally.Achieved the goal of reconstructing facial surface model automatically and quickly with geometric details well kept.SRMFM is an automatic and efficient 3D facial surface reconstruction method capable of keeping geometric details excellently.

  13. Computer Modelling of 3D Geological Surface

    Kodge, B G

    2011-01-01

    The geological surveying presently uses methods and tools for the computer modeling of 3D-structures of the geographical subsurface and geotechnical characterization as well as the application of geoinformation systems for management and analysis of spatial data, and their cartographic presentation. The objectives of this paper are to present a 3D geological surface model of Latur district in Maharashtra state of India. This study is undertaken through the several processes which are discussed in this paper to generate and visualize the automated 3D geological surface model of a projected area.

  14. Filtering of measurement noise with the 3D reconstruction algorithm

    Cappellin, Cecilia; Pivnenko, Sergey

    2014-01-01

    Two different antenna models are set up in GRASP and CHAMP, and noise is added to the radiated field. The noisy field is then given as input to the 3D reconstruction of DIATOOL and the SWE coefficients and the far-field radiated by the reconstructed currents are compared with the noise-free results...

  15. APPLICATION OF 3D MODELING IN 3D PRINTING FOR THE LOWER JAW RECONSTRUCTION

    Yu. Yu. Dikov

    2015-01-01

    Full Text Available Aim of study: improvement of functional and aesthetic results of microsurgery reconstructions of the lower jaw due to the use of the methodology of 3D modeling and 3D printing. Application of this methodology has been demonstrated on the example of treatment of 4 patients with locally distributed tumors of the mouth cavity, who underwent excision of the tumor with simultaneous reconstruction of the lower jaw with revascularized fibular graft.Before, one patient has already undergo segmental resection of the lower jaw with the defect replacement with the avascular ileac graft and a reconstruction plate. Then, a relapse of the disease and lysis of the graft has developed with him. Modeling of the graft according to the shape of the lower jaw was performed by making osteotomies of the bone part of the graft using three-dimensional virtual models created by computed tomography data. Then these 3D models were printed with a 3D printer of plastic with the scale of 1:1 with the fused deposition modeling (FDM technology and were used during the surgery in the course of modeling of the graft. Sterilizing of the plastic model was performed in the formalin chamber.This methodology allowed more specific reconstruction of the resected fragment of the lower jaw and get better functional and aesthetic results and prepare patients to further dental rehabilitation. Advantages of this methodology are the possibility of simultaneous performance of stages of reconstruction and resection and shortening of the time of surgery.

  16. Reconstruction of High Resolution 3D Objects from Incomplete Images and 3D Information

    Alexander Pacheco

    2014-05-01

    Full Text Available To this day, digital object reconstruction is a quite complex area that requires many techniques and novel approaches, in which high-resolution 3D objects present one of the biggest challenges. There are mainly two different methods that can be used to reconstruct high resolution objects and images: passive methods and active methods. This methods depend on the type of information available as input for modeling 3D objects. The passive methods use information contained in the images and the active methods make use of controlled light sources, such as lasers. The reconstruction of 3D objects is quite complex and there is no unique solution- The use of specific methodologies for the reconstruction of certain objects it’s also very common, such as human faces, molecular structures, etc. This paper proposes a novel hybrid methodology, composed by 10 phases that combine active and passive methods, using images and a laser in order to supplement the missing information and obtain better results in the 3D object reconstruction. Finally, the proposed methodology proved its efficiency in two complex topological complex objects.

  17. DCT and DST Based Image Compression for 3D Reconstruction

    Siddeq, Mohammed M.; Rodrigues, Marcos A.

    2017-03-01

    This paper introduces a new method for 2D image compression whose quality is demonstrated through accurate 3D reconstruction using structured light techniques and 3D reconstruction from multiple viewpoints. The method is based on two discrete transforms: (1) A one-dimensional Discrete Cosine Transform (DCT) is applied to each row of the image. (2) The output from the previous step is transformed again by a one-dimensional Discrete Sine Transform (DST), which is applied to each column of data generating new sets of high-frequency components followed by quantization of the higher frequencies. The output is then divided into two parts where the low-frequency components are compressed by arithmetic coding and the high frequency ones by an efficient minimization encoding algorithm. At decompression stage, a binary search algorithm is used to recover the original high frequency components. The technique is demonstrated by compressing 2D images up to 99% compression ratio. The decompressed images, which include images with structured light patterns for 3D reconstruction and from multiple viewpoints, are of high perceptual quality yielding accurate 3D reconstruction. Perceptual assessment and objective quality of compression are compared with JPEG and JPEG2000 through 2D and 3D RMSE. Results show that the proposed compression method is superior to both JPEG and JPEG2000 concerning 3D reconstruction, and with equivalent perceptual quality to JPEG2000.

  18. A new algorithm for 3D reconstruction from support functions

    2009-01-01

    We introduce a new algorithm for reconstructing an unknown shape from a finite number of noisy measurements of its support function. The algorithm, based on a least squares procedure, is very easy to program in standard software such as Matlab and allows, for the first time, good 3D reconstructions to be performed on an ordinary PC. Under mild conditions, theory guarantees that outputs of the algorithm will converge to the input shape as the number of measurements increases. Reconstructions ...

  19. Rebinning and reconstruction techniques for 3D TOF-PET

    Vandenberghe, Stefaan [Philips Research USA, Briarcliff NY (United States)]. E-mail: stefaan.vandenberghe@ugent.be; Karp, Joel [PET instrumentation group, University of Pennsylvania, Philadelphia, PA (United States)

    2006-12-20

    The measured time difference in 3D Time-of-Flight (TOF) positron emission tomography (PET) makes it possible to improve the signal-to-noise ratio of reconstructed images. The improvement in signal-to-noise ratio will probably be used to reduce imaging time. To keep up with workflow there will be a need for faster reconstruction methods. A variety of reconstruction and rebinning methods have been developed in the past for 2D and 3D TOF-PET data. The TOF information makes very simple reconstruction methods possible. These allow real time reconstruction but the obtained image quality is lower. Relative fast reconstructions can be obtained using rebinning techniques. Fully 3D iterative listmode reconstruction makes no approximations but comes at the expense of long reconstruction times. Data from Monte Carlo simulations of 3D TOF-PET scanners are used to quantify differences in noise and contrast between the different methods. Real time methods are useful for direct display after or even during acquisition, but do not generate useful data for reviewing. Rebinning methods can be used to reduce the reconstruction time with a small loss in image quality and the image quality loss is quite small if good timing resolution can be achieved. Fully 3D iterative listmode reconstruction maximizes the obtained image quality and should be used if not even a small loss in image quality is acceptable. When timing resolution is improved the difference between the different methods become clearly smaller and in the limit where timing resolution is equal to spatial resolution, the methods are equivalent.

  20. Light field display and 3D image reconstruction

    Iwane, Toru

    2016-06-01

    Light field optics and its applications become rather popular in these days. With light field optics or light field thesis, real 3D space can be described in 2D plane as 4D data, which we call as light field data. This process can be divided in two procedures. First, real3D scene is optically reduced with imaging lens. Second, this optically reduced 3D image is encoded into light field data. In later procedure we can say that 3D information is encoded onto a plane as 2D data by lens array plate. This transformation is reversible and acquired light field data can be decoded again into 3D image with the arrayed lens plate. "Refocusing" (focusing image on your favorite point after taking a picture), light-field camera's most popular function, is some kind of sectioning process from encoded 3D data (light field data) to 2D image. In this paper at first I show our actual light field camera and our 3D display using acquired and computer-simulated light field data, on which real 3D image is reconstructed. In second I explain our data processing method whose arithmetic operation is performed not in Fourier domain but in real domain. Then our 3D display system is characterized by a few features; reconstructed image is of finer resolutions than density of arrayed lenses and it is not necessary to adjust lens array plate to flat display on which light field data is displayed.

  1. 3D Lunar Terrain Reconstruction from Apollo Images

    Broxton, Michael J.; Nefian, Ara V.; Moratto, Zachary; Kim, Taemin; Lundy, Michael; Segal, Alkeksandr V.

    2009-01-01

    Generating accurate three dimensional planetary models is becoming increasingly important as NASA plans manned missions to return to the Moon in the next decade. This paper describes a 3D surface reconstruction system called the Ames Stereo Pipeline that is designed to produce such models automatically by processing orbital stereo imagery. We discuss two important core aspects of this system: (1) refinement of satellite station positions and pose estimates through least squares bundle adjustment; and (2) a stochastic plane fitting algorithm that generalizes the Lucas-Kanade method for optimal matching between stereo pair images.. These techniques allow us to automatically produce seamless, highly accurate digital elevation models from multiple stereo image pairs while significantly reducing the influence of image noise. Our technique is demonstrated on a set of 71 high resolution scanned images from the Apollo 15 mission

  2. Photogrammetry for rapid prototyping: development of noncontact 3D reconstruction technologies

    Knyaz, Vladimir A.

    2002-04-01

    An important stage of rapid prototyping technology is generating computer 3D model of an object to be reproduced. Wide variety of techniques for 3D model generation exists beginning with manual 3D models generation and finishing with full-automated reverse engineering system. The progress in CCD sensors and computers provides the background for integration of photogrammetry as an accurate 3D data source with CAD/CAM. The paper presents the results of developing photogrammetric methods for non-contact spatial coordinates measurements and generation of computer 3D model of real objects. The technology is based on object convergent images processing for calculating its 3D coordinates and surface reconstruction. The hardware used for spatial coordinates measurements is based on PC as central processing unit and video camera as image acquisition device. The original software for Windows 9X realizes the complete technology of 3D reconstruction for rapid input of geometry data in CAD/CAM systems. Technical characteristics of developed systems are given along with the results of applying for various tasks of 3D reconstruction. The paper describes the techniques used for non-contact measurements and the methods providing metric characteristics of reconstructed 3D model. Also the results of system application for 3D reconstruction of complex industrial objects are presented.

  3. 3D reconstruction based on spatial vanishing information

    Yuan Shu; Zheng Tan

    2005-01-01

    An approach for the three-dimensional (3D) reconstruction of architectural scenes from two un-calibrated images is described in this paper. From two views of one architectural structure, three pairs of corresponding vanishing points of three major mutual orthogonal directions can be extracted. The simple but powerful constraints of parallelism and orthogonal lines in architectural scenes can be used to calibrate the cameras and to recover the 3D information of the structure. This approach is applied to the real images of architectural scenes, and a 3D model of a building in virtual reality modelling language (VRML) format is presented which illustrates the method with successful performance.

  4. A Novel 2D Image Compression Algorithm Based on Two Levels DWT and DCT Transforms with Enhanced Minimize-Matrix-Size Algorithm for High Resolution Structured Light 3D Surface Reconstruction

    Siddeq, M. M.; Rodrigues, M. A.

    2015-09-01

    Image compression techniques are widely used on 2D image 2D video 3D images and 3D video. There are many types of compression techniques and among the most popular are JPEG and JPEG2000. In this research, we introduce a new compression method based on applying a two level discrete cosine transform (DCT) and a two level discrete wavelet transform (DWT) in connection with novel compression steps for high-resolution images. The proposed image compression algorithm consists of four steps. (1) Transform an image by a two level DWT followed by a DCT to produce two matrices: DC- and AC-Matrix, or low and high frequency matrix, respectively, (2) apply a second level DCT on the DC-Matrix to generate two arrays, namely nonzero-array and zero-array, (3) apply the Minimize-Matrix-Size algorithm to the AC-Matrix and to the other high-frequencies generated by the second level DWT, (4) apply arithmetic coding to the output of previous steps. A novel decompression algorithm, Fast-Match-Search algorithm (FMS), is used to reconstruct all high-frequency matrices. The FMS-algorithm computes all compressed data probabilities by using a table of data, and then using a binary search algorithm for finding decompressed data inside the table. Thereafter, all decoded DC-values with the decoded AC-coefficients are combined in one matrix followed by inverse two levels DCT with two levels DWT. The technique is tested by compression and reconstruction of 3D surface patches. Additionally, this technique is compared with JPEG and JPEG2000 algorithm through 2D and 3D root-mean-square-error following reconstruction. The results demonstrate that the proposed compression method has better visual properties than JPEG and JPEG2000 and is able to more accurately reconstruct surface patches in 3D.

  5. 3D Reconstruction of Human Motion from Monocular Image Sequences.

    Wandt, Bastian; Ackermann, Hanno; Rosenhahn, Bodo

    2016-08-01

    This article tackles the problem of estimating non-rigid human 3D shape and motion from image sequences taken by uncalibrated cameras. Similar to other state-of-the-art solutions we factorize 2D observations in camera parameters, base poses and mixing coefficients. Existing methods require sufficient camera motion during the sequence to achieve a correct 3D reconstruction. To obtain convincing 3D reconstructions from arbitrary camera motion, our method is based on a-priorly trained base poses. We show that strong periodic assumptions on the coefficients can be used to define an efficient and accurate algorithm for estimating periodic motion such as walking patterns. For the extension to non-periodic motion we propose a novel regularization term based on temporal bone length constancy. In contrast to other works, the proposed method does not use a predefined skeleton or anthropometric constraints and can handle arbitrary camera motion. We achieve convincing 3D reconstructions, even under the influence of noise and occlusions. Multiple experiments based on a 3D error metric demonstrate the stability of the proposed method. Compared to other state-of-the-art methods our algorithm shows a significant improvement.

  6. On 3D reconstruction of bubbles in volcanic ash particles

    Proussevitch, A.; Sahagian, D.; Mulukutla, G.; Kiely, C.

    2007-12-01

    Bubbles in volcanic ash particles are primarily represented by the remnants of films and plateau borders from disrupting foam. Without preservation of complete bubbles, measuring bubble size distributions a challenging task, but one for which we have taken a novel approach. Concavities in ash particles retain a record of bubble sizes in the curvature of their concave surfaces that resulted from bubble fragmentation and quenching during energetic magma eruptions. We have used two methods to measure bubble fragment curvature on the basis of 3D reconstruction of ash particle surfaces. One is based on High Resolution X-Ray Tomography (HRXRT) and the second one is based on stereo images from tilting Scattered Electron Microscopy (SEM). Both methods allow the creation of Digital Elevation Model (DEM) datasets of the ash particle surfaces which in turn are used to identify and measure vertical cross-sectional profiles of the individual bubble fragments ("craters"). Function fit analysis for circular or elliptical functions are applied to each bubble cross sectional profile in two orthogonal directions to reconstruct sizes of the original, complete bubbles. The method allows measurement of submicron (SEM; XUM), micron or larger (HRXRT) bubbles in ash particles. The bubble size distributions so obtained can provide valuable insights regarding magma dynamics and vesiculation that lead to explosive eruptions, as well as the processes of fragmentation in eruption columns. There are no previous systematic information/databases of vesiculation metrics for explosive silicic eruptions, but this new method can be used to produce these and thus provide better insights into prehistoric eruption styles for volcanic hazard assessment.

  7. Automating 3D reconstruction using a probabilistic grammar

    Xiong, Hanwei; Xu, Jun; Xu, Chenxi; Pan, Ming

    2015-10-01

    3D reconstruction of objects from point clouds with a laser scanner is still a laborious task in many applications. Automating 3D process is an ongoing research topic and suffers from the complex structure of the data. The main difficulty is due to lack of knowledge of real world objects structure. In this paper, we accumulate such structure knowledge by a probabilistic grammar learned from examples in the same category. The rules of the grammar capture compositional structures at different levels, and a feature dependent probability function is attached for every rule. The learned grammar can be used to parse new 3D point clouds, organize segment patches in a hierarchal way, and assign them meaningful labels. The parsed semantics can be used to guide the reconstruction algorithms automatically. Some examples are given to explain the method.

  8. 3-D flame temperature field reconstruction with multiobjective neural network

    Xiong Wan(万雄); Yiqing Gao(高益庆); Yuanmei Wang(汪元美)

    2003-01-01

    A novel 3-D temperature field reconstruction method is proposed in this paper, which is based on multi-wavelength thermometry and Hopfield neural network computed tomography. A mathematical modelof multi-wavelength thermometry is founded, and a neural network algorithm based on multiobjectiveoptimization is developed. Through computer simulation and comparison with the algebraic reconstructiontechnique (ART) and the filter back-projection algorithm (FBP), the reconstruction result of the newmethod is discussed in detail. The study shows that the new method always gives the best reconstructionresults. At last, temperature distribution of a section of four peaks candle flame is reconstructed with thisnovel method.

  9. A new algorithm for 3D reconstruction from support functions

    Gardner, Richard; Kiderlen, Markus

    2009-01-01

    We introduce a new algorithm for reconstructing an unknown shape from a finite number of noisy measurements of its support function. The algorithm, based on a least squares procedure, is very easy to program in standard software such as Matlab and allows, for the first time, good 3D reconstructions...... to be performed on an ordinary PC. Under mild conditions, theory guarantees that outputs of the algorithm will converge to the input shape as the number of measurements increases. Reconstructions may be obtained without any pre- or post-processing steps and with no restriction on the sets of measurement...

  10. Triangulation of 3D Surfaces Recovered from STL Grids

    D. Rypl

    2004-01-01

    Full Text Available In the present paper, an algorithm for the discretization of parametric 3D surfaces has been extended to the family of discrete surfaces represented by stereolithography (STL grids. The STL file format, developed for the rapid prototyping industry, is an attractive alternative to surface representation in solid modeling. Initially, a boundary representation is constructed from the STL file using feature recognition. Then a smooth surface is recovered over the original STL grid using an interpolating subdivision procedure. Finally, the reconstructed surface is subjected to the triangulation accomplished using the advancing front technique operating directly on the surface. The capability of the proposed methodology is illustrated on an example. 

  11. Improvement of geometrical measurements from 3D-SEM reconstructions

    Carli, Lorenzo; De Chiffre, Leonardo; Horsewell, Andy;

    2009-01-01

    an external diameter of 0.26mm. A series of measurements were performed to determine the accuracy of 3D reconstructions obtained using stereo-photogrammetry methods, finding a procedure to determine the optimum number of rotations of the object for an acceptable measuring uncertainty. It was determined......The quantification of 3D geometry at the nanometric scale is a major metrological challenge. In this work geometrical measurements on cylindrical items obtained with a 3D-SEM were investigated. Two items were measured: a wire gauge having a 0.25 mm nominal diameter and a hypodermic needle having...... that the diameter estimation performed using the 3D-SEM leads to an overestimation of approx. 7% compared to the reference values obtained using a 1-D length measuring machine. Standard deviation of SEM measurements performed on the wire gauge is approx. 1.5 times lower than the one performed on the hypodermic...

  12. [Customized 3D radiographic reconstruction of the human pelvis].

    Gauvin, C; Dansereau, J; Petit, Y; De Guise, J A; Labelle, H

    1998-01-01

    The pelvis is an essential element in the study of scoliosis since it constitutes the base of the spine and its orientation may affects postural balance. In order to study the role of the pelvis in the evolution and treatment of this disease, a new technique for the 3D personalised reconstruction of the pelvis was developed. It consists in identifying and digitizing 19 pelvic anatomical landmarks on postero-anterior and lateral x-rays and to reconstruct them in 3D with two techniques: the DLT algorithm developed by Marzan (1976) and, for 6 of the 19 landmarks, an adaptation of it called DLT with confidence coefficients. The latter takes into account the confidence given to the identification of the landmarks on each x-rays. Two methods were used to validate the reconstruction of the pelvis. The first one, used for 11 scoliotic patients and 2 dry pelvis specimens, consists in applying the reconstruction algorithm in an inverse way on the 3D coordinates of the reconstructed landmarks to obtain their 2D retroprojection on the x-ray planes, and thus comparing the retroprojected coordinates with the 2D digitized coordinates. The second method consists in measuring a dry pelvis specimen and comparing the 3D measured landmarks with the ones reconstructed with the x-rays of this specimen. For the first validation, results have shown that the lowest retroprojection errors (less than 2.5 +/- 2.6 mm) for the scoliotic patient group are located on the superior base of the sacrum, on the sacral curve and on the acetabula, while the highest (6.4 +/- 7.2 mm) were on the iliac crests. For the dry specimens, the retroprojection errors were below the millimeter. The second validation method showed 3D differences of 2.4 +/- 1.2 mm between measured and reconstructed landmarks of a dry specimen, which is of the same order of magnitude as what is reported in the literature for vertebrae. The reconstruction of the pelvis is thus considered adequate and its graphical wireframe

  13. 基于三维形貌重建的镗加工表面粗糙度检测%Boring Surface Roughness Detection Based on 3D Topography Reconstruction

    郭便

    2011-01-01

    以计算机显微视觉为检测手段,采用明暗恢复形状方法重建加工表面微观形貌,进而检测加工表面粗糙度.根据微观金属表面反射特性,采用基于Torrance-Sparrow光照模型的明暗恢复形状算法,完成了镗加工表面图像三维形貌重构与表面粗糙度参数检测.%Computer micro- vision is taken as the detection means.The 3D topography and roughness parameters of the workpiece surface was obtained by 3D reconstruction of the gray images of the workpiece surface using shape from shading.The SFS algorithm based on Torrance -Sparrow illuminant model was applied according to reflective characteristics of the metal micro - surface, 3D topography reconstruction and roughness detection of the workpiece surface was completed.

  14. 3D reconstruction of a human heart fascicle using SurfDriver

    Rader, Robert J.; Phillips, Steven J.; LaFollette, Paul S., Jr.

    2000-06-01

    The Temple University Medical School has a sequence of over 400 serial sections of adult normal ventricular human heart tissue, cut at 25 micrometer thickness. We used a Zeiss Ultraphot with a 4x planapo objective and a Pixera digital camera to make a series of 45 sequential montages to use in the 3D reconstruction of a fascicle (muscle bundle). We wrote custom software to merge 4 smaller image fields from each section into one composite image. We used SurfDriver software, developed by Scott Lozanoff of the University of Hawaii and David Moody of the University of Alberta, for registration, object boundary identification, and 3D surface reconstruction. We used an Epson Stylus Color 900 printer to get photo-quality prints. We describe the challenge and our solution to the following problems: image acquisition and digitization, image merge, alignment and registration, boundary identification, 3D surface reconstruction, 3D visualization and orientation, snapshot, and photo-quality prints.

  15. 3D reconstruction of multiple stained histology images

    Yi Song

    2013-01-01

    Full Text Available Context: Three dimensional (3D tissue reconstructions from the histology images with different stains allows the spatial alignment of structural and functional elements highlighted by different stains for quantitative study of many physiological and pathological phenomena. This has significant potential to improve the understanding of the growth patterns and the spatial arrangement of diseased cells, and enhance the study of biomechanical behavior of the tissue structures towards better treatments (e.g. tissue-engineering applications. Methods: This paper evaluates three strategies for 3D reconstruction from sets of two dimensional (2D histological sections with different stains, by combining methods of 2D multi-stain registration and 3D volumetric reconstruction from same stain sections. Setting and Design: The different strategies have been evaluated on two liver specimens (80 sections in total stained with Hematoxylin and Eosin (H and E, Sirius Red, and Cytokeratin (CK 7. Results and Conclusion: A strategy of using multi-stain registration to align images of a second stain to a volume reconstructed by same-stain registration results in the lowest overall error, although an interlaced image registration approach may be more robust to poor section quality.

  16. 3D/3D registration of coronary CTA and biplane XA reconstructions for improved image guidance

    Dibildox, Gerardo, E-mail: g.dibildox@erasmusmc.nl; Baka, Nora; Walsum, Theo van [Biomedical Imaging Group Rotterdam, Departments of Radiology and Medical Informatics, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands); Punt, Mark; Aben, Jean-Paul [Pie Medical Imaging, 6227 AJ Maastricht (Netherlands); Schultz, Carl [Department of Cardiology, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands); Niessen, Wiro [Quantitative Imaging Group, Faculty of Applied Sciences, Delft University of Technology, 2628 CJ Delft, The Netherlands and Biomedical Imaging Group Rotterdam, Departments of Radiology and Medical Informatics, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands)

    2014-09-15

    Purpose: The authors aim to improve image guidance during percutaneous coronary interventions of chronic total occlusions (CTO) by providing information obtained from computed tomography angiography (CTA) to the cardiac interventionist. To this end, the authors investigate a method to register a 3D CTA model to biplane reconstructions. Methods: The authors developed a method for registering preoperative coronary CTA with intraoperative biplane x-ray angiography (XA) images via 3D models of the coronary arteries. The models are extracted from the CTA and biplane XA images, and are temporally aligned based on CTA reconstruction phase and XA ECG signals. Rigid spatial alignment is achieved with a robust probabilistic point set registration approach using Gaussian mixture models (GMMs). This approach is extended by including orientation in the Gaussian mixtures and by weighting bifurcation points. The method is evaluated on retrospectively acquired coronary CTA datasets of 23 CTO patients for which biplane XA images are available. Results: The Gaussian mixture model approach achieved a median registration accuracy of 1.7 mm. The extended GMM approach including orientation was not significantly different (P > 0.1) but did improve robustness with regards to the initialization of the 3D models. Conclusions: The authors demonstrated that the GMM approach can effectively be applied to register CTA to biplane XA images for the purpose of improving image guidance in percutaneous coronary interventions.

  17. 3-D Equilibrium Reconstruction in the HSX Stellarator

    Schmitt, J. C.

    2011-10-01

    Axisymmetric toroidal devices reconstruct the MHD equilibrium properties from measured pressure, magnetic field components, external field coil currents, and other diagnostics, by solving the Grad-Shafranov equation. For modern toroidal systems including advanced stellarators and tokamaks with asymmetric fields, such as those that arise from finite toroidal ripple or ferromagnetic blanket materials, a 3-D equilibrium reconstruction is required to account for non-axisymmetric effects and accurately determine the plasma profiles. The 3-D equilibrium reconstruction of plasma current and pressure profiles in the quasi-helically symmetric stellarator HSX is presented. The equilibrium currents in the HSX stellarator are measured with a set of magnetic diagnostics, which includes Rogowski coils, diamagnetic loops, two poloidal `belts' that are separated by 1/3 of a field period, and internal coils. Each belt consists of 16 3-axis magnetic pick-up coils to measure the local magnetic field, and 15 internal coils measure the poloidal field. V3FIT, a 3-D equilibrium reconstruction code, is used to reconstruct the pressure and current profile from the measured fields and fluxes. Reconstructions based on the external diagnostics confirm that the Pfirsch-Schlüter current is helical due to the lack of toroidal curvature in HSX. The reconstruction of the pressure profile and stored energy based on the internal poloidal array agrees well with that measured by Thomson scattering and the flux loop. Later in time, the measurements are dominated by the bootstrap current which rises on a timescale comparable to the length of the discharge. The reconstruction of the current profile is consistent with the neoclassical bootstrap current when the effects of momentum conservation between plasma species and the 3-D inductive response of the plasma column are considered. The magnitude of the Pfirsch-Schlüter and bootstrap currents are reduced by the high effective transform (~3), which is

  18. Vision models for 3D surfaces

    Mitra, Sunanda

    1992-11-01

    Different approaches to computational stereo to represent human stereo vision have been developed over the past two decades. The Marr-Poggio theory of human stereo vision is probably the most widely accepted model of the human stereo vision. However, recently developed motion stereo models which use a sequence of images taken by either a moving camera or a moving object provide an alternative method of achieving multi-resolution matching without the use of Laplacian of Gaussian operators. While using image sequences, the baseline between two camera positions for a image pair is changed for the subsequent image pair so as to achieve different resolution for each image pair. Having different baselines also avoids the inherent occlusion problem in stereo vision models. The advantage of using multi-resolution images acquired by camera positioned at different baselines over those acquired by LOG operators is that one does not have to encounter spurious edges often created by zero-crossings in the LOG operated images. Therefore in designing a computer vision system, a motion stereo model is more appropriate than a stereo vision model. However, in some applications where only a stereo pair of images are available, recovery of 3D surfaces of natural scenes are possible in a computationally efficient manner by using cepstrum matching and regularization techniques. Section 2 of this paper describes a motion stereo model using multi-scale cepstrum matching for the detection of disparity between image pairs in a sequence of images and subsequent recovery of 3D surfaces from depth-map obtained by a non convergent triangulation technique. Section 3 presents a 3D surface recovery technique from a stereo pair using cepstrum matching for disparity detection and cubic B-splines for surface smoothing. Section 4 contains the results of 3D surface recovery using both of the techniques mentioned above. Section 5 discusses the merit of 2D cepstrum matching and cubic B

  19. A 3D surface imaging system for assessing human obesity

    Xu, B.; Yu, W.; Yao, M.; Yao, X.; Li, Q.; Pepper, M. R.; Freeland-Graves, J. H.

    2009-08-01

    The increasing prevalence of obesity suggests a need to develop a convenient, reliable and economical tool for assessment of this condition. Three-dimensional (3D) body surface imaging has emerged as an exciting technology for estimation of body composition. This paper presents a new 3D body imaging system, which was designed for enhanced portability, affordability, and functionality. In this system, stereo vision technology was used to satisfy the requirements for a simple hardware setup and fast image acquisitions. The portability of the system was created via a two-stand configuration, and the accuracy of body volume measurements was improved by customizing stereo matching and surface reconstruction algorithms that target specific problems in 3D body imaging. Body measurement functions dedicated to body composition assessment also were developed. The overall performance of the system was evaluated in human subjects by comparison to other conventional anthropometric methods, as well as air displacement plethysmography, for body fat assessment.

  20. On detailed 3D reconstruction of large indoor environments

    Bondarev, Egor

    2015-03-01

    In this paper we present techniques for highly detailed 3D reconstruction of extra large indoor environments. We discuss the benefits and drawbacks of low-range, far-range and hybrid sensing and reconstruction approaches. The proposed techniques for low-range and hybrid reconstruction, enabling the reconstruction density of 125 points/cm3 on large 100.000 m3 models, are presented in detail. The techniques tackle the core challenges for the above requirements, such as a multi-modal data fusion (fusion of a LIDAR data with a Kinect data), accurate sensor pose estimation, high-density scanning and depth data noise filtering. Other important aspects for extra large 3D indoor reconstruction are the point cloud decimation and real-time rendering. In this paper, we present a method for planar-based point cloud decimation, allowing for reduction of a point cloud size by 80-95%. Besides this, we introduce a method for online rendering of extra large point clouds enabling real-time visualization of huge cloud spaces in conventional web browsers.

  1. 3D reconstruction methods of coronal structures by radio observations

    Aschwanden, Markus J.; Bastian, T. S.; White, Stephen M.

    1992-01-01

    The ability to carry out the three dimensional (3D) reconstruction of structures in the solar corona would represent a major advance in the study of the physical properties in active regions and in flares. Methods which allow a geometric reconstruction of quasistationary coronal structures (for example active region loops) or dynamic structures (for example flaring loops) are described: stereoscopy of multi-day imaging observations by the VLA (Very Large Array); tomography of optically thin emission (in radio or soft x-rays); multifrequency band imaging by the VLA; and tracing of magnetic field lines by propagating electron beams.

  2. Neural Network Based Reconstruction of a 3D Object from a 2D Wireframe

    Johnson, Kyle; Lipson, Hod

    2010-01-01

    We propose a new approach for constructing a 3D representation from a 2D wireframe drawing. A drawing is simply a parallel projection of a 3D object onto a 2D surface; humans are able to recreate mental 3D models from 2D representations very easily, yet the process is very difficult to emulate computationally. We hypothesize that our ability to perform this construction relies on the angles in the 2D scene, among other geometric properties. Being able to reproduce this reconstruction process automatically would allow for efficient and robust 3D sketch interfaces. Our research focuses on the relationship between 2D geometry observable in the sketch and 3D geometry derived from a potential 3D construction. We present a fully automated system that constructs 3D representations from 2D wireframes using a neural network in conjunction with a genetic search algorithm.

  3. Low contrast 3D reconstruction from C-arm data

    Zellerhoff, M.; Scholz, B.; Ruehrnschopf, E.-P.; Brunner, T.

    2005-04-01

    The integration of 3D-imaging functionality into C-arm systems combines advantages of interventional X-ray systems, e.g. good patient access and live fluoroscopy, with 3D imaging capabilities similar to those of a CT-scanner. To date 3D-imaging with a C-arm system has been mainly used to visualize high contrast objects. However, the advent of high quality flat panel detectors improves the low contrast imaging capabilities. We discuss the influence of scattered radiation, beam hardening, truncated projections, quantization and detector recording levels on the image quality. Subsequently, we present algorithms and methods to correct these effects in order to achieve low contrast resolution. The performance of our pre- and post-reconstructive correction procedures is demonstrated by first clinical cases.

  4. 3D tissue surface reconstruction based on compressed sensing and LS -SVM%基于压缩感知与LS-SVM的三维组织表面重建

    袁志勇; 童倩倩; 喻思娇; 廖祥云

    2014-01-01

    A method of 3D tissue surface reconstruction based on compressed sensing (CS ) and least squares support vector machine (LS -SVM ) was proposed for a small amount of uniformly sampling data points on 3D surface .Firstly ,the same amount of data points with the surface to be reconstruc-ted was obtained by using fitting and interpolation method . Then , the discrete cosine transform (DCT ) was adopted for the 3D coordinate sparse representation respectively ,and the designed adap-tive observation matrix for signal observation .The orthogonal matching pursuit (OMP) was used as reconstruction algorithm .Finally ,the results of compressed sensing (CS) reconstruction were correc-ted by LS -SVM regression prediction model .Experimental results show that the tissue surface recon-struction data error based on the method proposed is small ,and the reconstructed surface is smooth , w hich can provide accurate surface data model for virtual surgery system based on virtual reality .%针对在三维表面上均匀采集的少量数据点,提出一种基于压缩感知与最小二乘支持向量机(L S-SVM )的三维组织表面重建方法。通过结合采用拟合与插值方法得到与待重构表面数据相同数目的数据点集,采用离散余弦变换(DC T )分别得到其三维坐标的稀疏系数,用设计的自适应观测矩阵进行观测,并选用正交匹配追踪算法作为重构算法,最后采用LS-SVM 回归预测模型对压缩感知重构结果进行修正。实验结果表明:该重建方法得到的组织表面数据误差小,能保持在1 mm左右,重建表面光滑,为基于虚拟现实的虚拟手术系统提供了精确的表面数据模型。

  5. 3D scene reconstruction: why, when, and how?

    McBride, Jonah C.; Snorrason, Magnus S.; Goodsell, Thomas R.; Eaton, Ross S.; Stevens, Mark R.

    2004-09-01

    Mobile robot designers frequently look to computer vision to solve navigation, obstacle avoidance, and object detection problems. Potential solutions using low-cost video cameras are particularly alluring. Recent results in 3D scene reconstruction from a single moving camera seem particularly relevant, but robot designers who attempt to use such 3D techniques have uncovered a variety of practical concerns. We present lessons-learned from developing a single-camera 3D scene reconstruction system that provides both a real-time camera motion estimate and a rough model of major 3D structures in the robot"s vicinity. Our objective is to use the motion estimate to supplement GPS (indoors in particular) and to use the model to provide guidance for further vision processing (look for signs on walls, obstacles on the ground, etc.). The computational geometry involved is closely related to traditional two-camera stereo, however a number of degenerate cases exist. We also demonstrate how SFM can use used to improve the performance of two specific robot navigation tasks.

  6. Comparing 3D virtual methods for hemimandibular body reconstruction.

    Benazzi, Stefano; Fiorenza, Luca; Kozakowski, Stephanie; Kullmer, Ottmar

    2011-07-01

    Reconstruction of fractured, distorted, or missing parts in human skeleton presents an equal challenge in the fields of paleoanthropology, bioarcheology, forensics, and medicine. This is particularly important within the disciplines such as orthodontics and surgery, when dealing with mandibular defects due to tumors, developmental abnormalities, or trauma. In such cases, proper restorations of both form (for esthetic purposes) and function (restoration of articulation, occlusion, and mastication) are required. Several digital approaches based on three-dimensional (3D) digital modeling, computer-aided design (CAD)/computer-aided manufacturing techniques, and more recently geometric morphometric methods have been used to solve this problem. Nevertheless, comparisons among their outcomes are rarely provided. In this contribution, three methods for hemimandibular body reconstruction have been tested. Two bone defects were virtually simulated in a 3D digital model of a human hemimandible. Accordingly, 3D digital scaffolds were obtained using the mirror copy of the unaffected hemimandible (Method 1), the thin plate spline (TPS) interpolation (Method 2), and the combination between TPS and CAD techniques (Method 3). The mirror copy of the unaffected hemimandible does not provide a suitable solution for bone restoration. The combination between TPS interpolation and CAD techniques (Method 3) produces an almost perfect-fitting 3D digital model that can be used for biocompatible custom-made scaffolds generated by rapid prototyping technologies.

  7. Projective 3D-reconstruction of Uncalibrated Endoscopic Images

    P. Faltin

    2010-01-01

    Full Text Available The most common medical diagnostic method for urinary bladder cancer is cystoscopy. This inspection of the bladder is performed by a rigid endoscope, which is usually guided close to the bladder wall. This causes a very limited field of view; difficulty of navigation is aggravated by the usage of angled endoscopes. These factors cause difficulties in orientation and visual control. To overcome this problem, the paper presents a method for extracting 3D information from uncalibrated endoscopic image sequences and for reconstructing the scene content. The method uses the SURF-algorithm to extract features from the images and relates the images by advanced matching. To stabilize the matching, the epipolar geometry is extracted for each image pair using a modified RANSAC-algorithm. Afterwards these matched point pairs are used to generate point triplets over three images and to describe the trifocal geometry. The 3D scene points are determined by applying triangulation to the matched image points. Thus, these points are used to generate a projective 3D reconstruction of the scene, and provide the first step for further metric reconstructions.

  8. 基于单幅图像大尺寸实际平面上的光点定位方法%3D reconstruction of feature point on large scale object surface from a single image

    杨明; 仲小清; 霍炬

    2011-01-01

    For the design and development of a vision sensor for the ground test, a method of 3D reconstruction of feature point on large scale object surface from a single image is proposed. By establishing the math model of the 3D coordinate of feature point on the object surface and using the spatial ray through feature point, the 3D coordinate of the feature point can be determined u sing sigle image. According to the characteristics, the object surface can be classified into three types, high order surface type, block plane type and block surface type, while the corresponding location methods are introduced. Simulation experiment is conducted to compare the accuracy of three different 3D reconstruction methods, and the proposed method performs the best. By the measurement precision of 1 mm in the range of 8 000 mm× 8 000 mm, it is proved that the proposed method is suitable for 3D reconstruction of feature point on large scale object surface.%为满足某地面实验中视觉测量系统的研制需求,研究了一种基于单幅图像的大尺寸实际平面上光点的定位方法.通过建立关于实际平面上光点3D坐标的数学模型,结合利用图像确定的通过光点的空间光束,实现了由单幅图像确定光点的3D坐标.依据具体特点,把实际平面分为高阶曲面型、分块平面型和分块曲面型3种类型,并分别给出了相应类型的光点定位方法.仿真实验验证了所提出方法的正确性,并比较分析了方法的精确性;实际试验数据表明,所提出方法可以满足尺寸为8 000 mm × 8 000 mm的大型实际平面上光点的定位需求,定位误差小于1 mm.

  9. 3D Reconstruction of Coronary Artery Vascular Smooth Muscle Cells.

    Tong Luo

    Full Text Available The 3D geometry of individual vascular smooth muscle cells (VSMCs, which are essential for understanding the mechanical function of blood vessels, are currently not available. This paper introduces a new 3D segmentation algorithm to determine VSMC morphology and orientation.A total of 112 VSMCs from six porcine coronary arteries were used in the analysis. A 3D semi-automatic segmentation method was developed to reconstruct individual VSMCs from cell clumps as well as to extract the 3D geometry of VSMCs. A new edge blocking model was introduced to recognize cell boundary while an edge growing was developed for optimal interpolation and edge verification. The proposed methods were designed based on Region of Interest (ROI selected by user and interactive responses of limited key edges. Enhanced cell boundary features were used to construct the cell's initial boundary for further edge growing. A unified framework of morphological parameters (dimensions and orientations was proposed for the 3D volume data. Virtual phantom was designed to validate the tilt angle measurements, while other parameters extracted from 3D segmentations were compared with manual measurements to assess the accuracy of the algorithm. The length, width and thickness of VSMCs were 62.9±14.9 μm, 4.6±0.6 μm and 6.2±1.8 μm (mean±SD. In longitudinal-circumferential plane of blood vessel, VSMCs align off the circumferential direction with two mean angles of -19.4±9.3° and 10.9±4.7°, while an out-of-plane angle (i.e., radial tilt angle was found to be 8±7.6° with median as 5.7°.A 3D segmentation algorithm was developed to reconstruct individual VSMCs of blood vessel walls based on optical image stacks. The results were validated by a virtual phantom and manual measurement. The obtained 3D geometries can be utilized in mathematical models and leads a better understanding of vascular mechanical properties and function.

  10. Dose fractionation theorem in 3-D reconstruction (tomography)

    Glaeser, R.M. [Lawrence Berkeley National Lab., CA (United States)

    1997-02-01

    It is commonly assumed that the large number of projections for single-axis tomography precludes its application to most beam-labile specimens. However, Hegerl and Hoppe have pointed out that the total dose required to achieve statistical significance for each voxel of a computed 3-D reconstruction is the same as that required to obtain a single 2-D image of that isolated voxel, at the same level of statistical significance. Thus a statistically significant 3-D image can be computed from statistically insignificant projections, as along as the total dosage that is distributed among these projections is high enough that it would have resulted in a statistically significant projection, if applied to only one image. We have tested this critical theorem by simulating the tomographic reconstruction of a realistic 3-D model created from an electron micrograph. The simulations verify the basic conclusions of high absorption, signal-dependent noise, varying specimen contrast and missing angular range. Furthermore, the simulations demonstrate that individual projections in the series of fractionated-dose images can be aligned by cross-correlation because they contain significant information derived from the summation of features from different depths in the structure. This latter information is generally not useful for structural interpretation prior to 3-D reconstruction, owing to the complexity of most specimens investigated by single-axis tomography. These results, in combination with dose estimates for imaging single voxels and measurements of radiation damage in the electron microscope, demonstrate that it is feasible to use single-axis tomography with soft X-ray microscopy of frozen-hydrated specimens.

  11. 3-D reconstruction of coastal bathymetry from AIRSAR/POLSAR data

    Maged MARGHANY; Mazlan HASHIM; Arthur P. CRACKNELL

    2009-01-01

    This paper introduces a new method for reconstructing three-dimensional (3D) coastal bathymetry changes from Airborne AIRSAR/POLSAR synthetic aperture data. The new method is based on integration between fuzzy B-spline and Volterra algorithm. Volterra algorithm is used to simulate the ocean surface current from AIRSAR/POLSAR data. Then, the ocean surface current information used as input for continuity equation to estimate the water depths from AIRSAR/POLSAR data. This study shows that 3D ocean bathymetry can be reconstructed from AIRSAR/POLSAR data with root mean square error of ±0.03 m.

  12. Application of Fourier Transform Profilometry in 3D-surface Reconstruction%傅立叶轮廓术在重建三维物体轮廓中的应用

    石璧尔; 路宽; 王颖婷; 李贞安; 白净

    2011-01-01

    With the improvement of system frame and reconstruction methods in fluorescent molecules tomography (FMT). The FMT technology has been widely used as an important experimental tool in biomedical research. It is necessary to get the 3D-surface profile of the experimental object as the boundary constraints of FMT reconstruction algorithms. We proposed a new 3D-surface reconstruction method based on Fourier transform profilometry (FTP) method under the blue-purple light condition. The slice images were reconstructed using proper image processing methods, frequency spectrum analysis and filtering. The results of experiment showed that the method properly reconstructed the 3D-surface of objects and has the mm-level accuracy. Compared to other methods, this one is simple and fast. Besides its well-reconstructed, the proposed method could help monitor the behavior of the object during the experiment to ensure the correspondence of the imaging process. Furthermore, the method chooses blue-purple light section as its light source to avoid the interference towards fluorescence imaging.%随着荧光分子断层成像(FMT)技术中系统结构和重建算法的改进,FMT技术已经成为一种重要的生命医学研究手段.目前FMT算法都需要得到被测对象的三维表面轮廓作为边界约束条件.本文提出一种在蓝紫光条件下基于傅立叶变换轮廓术(FTP)方法,经图像处理、频谱分析及滤波后重构出FMT系统实验中物体的轮廓.实验结果表明,该方法具有毫米量级的重建精度.该方法能够很好地重建出物体表面轮廓,以及实时监控实验过程中物体的行为,保证了整个成像过程的对应性.此外,该法选用蓝紫光段,避免了对荧光成像的干扰.

  13. 3D temperature field reconstruction using ultrasound sensing system

    Liu, Yuqian; Ma, Tong; Cao, Chengyu; Wang, Xingwei

    2016-04-01

    3D temperature field reconstruction is of practical interest to the power, transportation and aviation industries and it also opens up opportunities for real time control or optimization of high temperature fluid or combustion process. In our paper, a new distributed optical fiber sensing system consisting of a series of elements will be used to generate and receive acoustic signals. This system is the first active temperature field sensing system that features the advantages of the optical fiber sensors (distributed sensing capability) and the acoustic sensors (non-contact measurement). Signals along multiple paths will be measured simultaneously enabled by a code division multiple access (CDMA) technique. Then a proposed Gaussian Radial Basis Functions (GRBF)-based approach can approximate the temperature field as a finite summation of space-dependent basis functions and time-dependent coefficients. The travel time of the acoustic signals depends on the temperature of the media. On this basis, the Gaussian functions are integrated along a number of paths which are determined by the number and distribution of sensors. The inversion problem to estimate the unknown parameters of the Gaussian functions can be solved with the measured times-of-flight (ToF) of acoustic waves and the length of propagation paths using the recursive least square method (RLS). The simulation results show an approximation error less than 2% in 2D and 5% in 3D respectively. It demonstrates the availability and efficiency of our proposed 3D temperature field reconstruction mechanism.

  14. Facial-paralysis diagnostic system based on 3D reconstruction

    Khairunnisaa, Aida; Basah, Shafriza Nisha; Yazid, Haniza; Basri, Hassrizal Hassan; Yaacob, Sazali; Chin, Lim Chee

    2015-05-01

    The diagnostic process of facial paralysis requires qualitative assessment for the classification and treatment planning. This result is inconsistent assessment that potential affect treatment planning. We developed a facial-paralysis diagnostic system based on 3D reconstruction of RGB and depth data using a standard structured-light camera - Kinect 360 - and implementation of Active Appearance Models (AAM). We also proposed a quantitative assessment for facial paralysis based on triangular model. In this paper, we report on the design and development process, including preliminary experimental results. Our preliminary experimental results demonstrate the feasibility of our quantitative assessment system to diagnose facial paralysis.

  15. 3D Volumetric Modeling and Microvascular Reconstruction of Irradiated Lumbosacral Defects After Oncologic Resection

    Emilio Garcia-Tutor

    2016-12-01

    Full Text Available Background: Locoregional flaps are sufficient in most sacral reconstructions. However, large sacral defects due to malignancy necessitate a different reconstructive approach, with local flaps compromised by radiation and regional flaps inadequate for broad surface areas or substantial volume obliteration. In this report, we present our experience using free muscle transfer for volumetric reconstruction in such cases, and demonstrate 3D haptic models of the sacral defect to aid preoperative planning.Methods: Five consecutive patients with irradiated sacral defects secondary to oncologic resections were included, surface area ranging from 143-600cm2. Latissimus dorsi-based free flap sacral reconstruction was performed in each case, between 2005 and 2011. Where the superior gluteal artery was compromised, the subcostal artery was used as a recipient vessel. Microvascular technique, complications and outcomes are reported. The use of volumetric analysis and 3D printing is also demonstrated, with imaging data converted to 3D images suitable for 3D printing with Osirix software (Pixmeo, Geneva, Switzerland. An office-based, desktop 3D printer was used to print 3D models of sacral defects, used to demonstrate surface area and contour and produce a volumetric print of the dead space needed for flap obliteration. Results: The clinical series of latissimus dorsi free flap reconstructions is presented, with successful transfer in all cases, and adequate soft-tissue cover and volume obliteration achieved. The original use of the subcostal artery as a recipient vessel was successfully achieved. All wounds healed uneventfully. 3D printing is also demonstrated as a useful tool for 3D evaluation of volume and dead-space.Conclusion: Free flaps offer unique benefits in sacral reconstruction where local tissue is compromised by irradiation and tumor recurrence, and dead-space requires accurate volumetric reconstruction. We describe for the first time the use of

  16. GLIMPSE: Accurate 3D weak lensing reconstructions using sparsity

    Leonard, Adrienne; Starck, Jean-Luc

    2013-01-01

    We present GLIMPSE - Gravitational Lensing Inversion and MaPping with Sparse Estimators - a new algorithm to generate density reconstructions in three dimensions from photometric weak lensing measurements. This is an extension of earlier work in one dimension aimed at applying compressive sensing theory to the inversion of gravitational lensing measurements to recover 3D density maps. Using the assumption that the density can be represented sparsely in our chosen basis - 2D transverse wavelets and 1D line of sight dirac functions - we show that clusters of galaxies can be identified and accurately localised and characterised using this method. Throughout, we use simulated data consistent with the quality currently attainable in large surveys. We present a thorough statistical analysis of the errors and biases in both the redshifts of detected structures and their amplitudes. The GLIMPSE method is able to produce reconstructions at significantly higher resolution than the input data; in this paper we show reco...

  17. New Algorithm for 3D Facial Model Reconstruction and Its Application in Virtual Reality

    Rong-Hua Liang; Zhi-Geng Pan; Chun Chen

    2004-01-01

    3D human face model reconstruction is essential to the generation of facial animations that is widely used in the field of virtual reality(VR).The main issues of 3D facial model reconstruction based on images by vision technologies are in twofold: one is to select and match the corresponding features of face from two images with minimal interaction and the other is to generate the realistic-looking human face model.In this paper,a new algorithm for realistic-looking face reconstruction is presented based on stereo vision.Firstly,a pattern is printed and attached to a planar surface for camera calibration,and corners generation and corners matching between two images are performed by integrating modified image pyramid Lucas-Kanade(PLK)algorithm and local adjustment algorithm,and then 3D coordinates of corners are obtained by 3D reconstruction.Individual face model is generated by the deformation of general 3D model and interpolation of the features.Finally,realisticlooking human face model is obtained after texture mapping and eyes modeling.In addition,some application examples in the field of VR are given.Experimental result shows that the proposed algorithm is robust and the 3D model is photo-realistic.

  18. 3D reconstruction of complex geological bodies: Examples from the Alps

    Zanchi, Andrea; Francesca, Salvi; Stefano, Zanchetta; Simone, Sterlacchini; Graziano, Guerra

    2009-01-01

    Cartographic geological and structural data collected in the field and managed by Geographic Information Systems (GIS) technology can be used for 3D reconstruction of complex geological bodies. Using a link between GIS tools and gOcad, stratigraphic and tectonic surfaces can be reconstructed taking into account any geometrical constraint derived from field observations. Complex surfaces can be reconstructed using large data sets analysed by suitable geometrical techniques. Three main typologies of geometric features and related attributes are exported from a GIS-geodatabase: (1) topographic data as points from a digital elevation model; (2) stratigraphic and tectonic boundaries, and linear features as 2D polylines; (3) structural data as points. After having imported the available information into gOcad, the following steps should be performed: (1) construction of the topographic surface by interpolation of points; (2) 3D mapping of the linear geological boundaries and linear features by vertical projection on the reconstructed topographic surface; (3) definition of geometrical constraints from planar and linear outcrop data; (4) construction of a network of cross-sections based on field observations and geometrical constraints; (5) creation of 3D surfaces, closed volumes and grids from the constructed objects. Three examples of the reconstruction of complex geological bodies from the Italian Alps are presented here. The methodology demonstrates that although only outcrop data were available, 3D modelling has allows the checking of the geometrical consistency of the interpretative 2D sections and of the field geology, through a 3D visualisation of geometrical models. Application of a 3D geometrical model to the case studies can be very useful in geomechanical modelling for slope-stability or resource evaluation.

  19. 基于多属性的地质目标体表面重建方法研究%Research on Surface Reconstruction Method of 3D Geological Target Body Based on Multi-Attribute

    邓博文; 赵正果; 姚兴苗

    2015-01-01

    地震资料解释几乎覆盖整个基础地质的研究过程,而其中三维地质目标体的表面重建及可视化又是极其重要的一部分。在实际的地震解释过程中,不同的地震属性从不同的方面反映出地震数据的特点,为了结合不同的地震属性更加全面的反映地质目标体的特点并且消除单一地震属性数据带来的多解性问题,提出一种新的三维地质目标体表面重建及数据填充和表面平滑的方法流程。介绍基于模糊逻辑的多属性数据特征融合的地质目标体提取方法;介绍基于形态学方法的地质目标体数据填充方法和基于高斯平滑算法的地质目标体表面平滑。通过对实际地震工区进行仿真实验,得到理想的实验结果,为三维地质目标体表面重建提供一种新的研究思路。%Almost all of the basic geological study and petroleum geology study will involve the seismic data interpretation, and 3D surface recon-struction and visualization of anomaly bodies is an important part of seismic data interpretation. In the practical seismic data, different seismic attributes often reflect different aspects of underground situation. In order to combine different seismic attributes to reflect the characteristics of target body more fully and eliminate the uncertainty of a single seismic data, proposes a new surface reconstruction method work flow of 3D target body. This workflow includes surface reconstruction method, data filling and surface smoothing. Introduces the method of 3D geological target body extraction based on data fusion of different seismic attributes, and this method adapts the method of fuzzy logic. Introduces data filling of 3D geological target body method based on morphology and surface smoothing of 3D geological target body based on Gaussian smoothing. This new workflow is used in practical project of geological interpretation, and has some nice results. It gives surface

  20. 3D geophysical inversion for contact surfaces

    Lelièvre, Peter; Farquharson, Colin

    2014-05-01

    Geologists' interpretations about the Earth typically involve distinct rock units with contacts (interfaces) between them. In contrast, standard minimum-structure volumetric inversions (performed on meshes of space-filling cells) recover smooth models inconsistent with such interpretations. There are several approaches through which geophysical inversion can help recover models with the desired characteristics. Some authors have developed iterative strategies in which several volumetric inversions are performed with regularization parameters changing to achieve sharper interfaces at automatically determined locations. Another approach is to redesign the regularization to be consistent with the desired model characteristics, e.g. L1-like norms or compactness measures. A few researchers have taken approaches that limit the recovered values to lie within particular ranges, resulting in sharp discontinuities; these include binary inversion, level set methods and clustering strategies. In most of the approaches mentioned above, the model parameterization considers the physical properties in each of the many space-filling cells within the volume of interest. The exception are level set methods, in which a higher dimensional function is parameterized and the contact surface is determined from the zero-level of that function. However, even level-set methods rely on an underlying volumetric mesh. We are researching a fundamentally different type of inversion that parameterizes the Earth in terms of the contact surfaces between rock units. 3D geological Earth models typically comprise wireframe surfaces of tessellated triangles or other polygonal planar facets. This wireframe representation allows for flexible and efficient generation of complicated geological structures. Therefore, a natural approach for representing a geophysical model in an inversion is to parameterize the wireframe contact surfaces as the coordinates of the nodes (facet vertices). The geological and

  1. A Laser Line Auto-Scanning System for Underwater 3D Reconstruction.

    Chi, Shukai; Xie, Zexiao; Chen, Wenzhu

    2016-09-20

    In this study, a laser line auto-scanning system was designed to perform underwater close-range 3D reconstructions with high accuracy and resolution. The system changes the laser plane direction with a galvanometer to perform automatic scanning and obtain continuous laser strips for underwater 3D reconstruction. The system parameters were calibrated with the homography constraints between the target plane and image plane. A cost function was defined to optimize the galvanometer's rotating axis equation. Compensation was carried out for the refraction of the incident and emitted light at the interface. The accuracy and the spatial measurement capability of the system were tested and analyzed with standard balls under laboratory underwater conditions, and the 3D surface reconstruction for a sealing cover of an underwater instrument was proved to be satisfactory.

  2. A Laser Line Auto-Scanning System for Underwater 3D Reconstruction

    Shukai Chi

    2016-09-01

    Full Text Available In this study, a laser line auto-scanning system was designed to perform underwater close-range 3D reconstructions with high accuracy and resolution. The system changes the laser plane direction with a galvanometer to perform automatic scanning and obtain continuous laser strips for underwater 3D reconstruction. The system parameters were calibrated with the homography constraints between the target plane and image plane. A cost function was defined to optimize the galvanometer’s rotating axis equation. Compensation was carried out for the refraction of the incident and emitted light at the interface. The accuracy and the spatial measurement capability of the system were tested and analyzed with standard balls under laboratory underwater conditions, and the 3D surface reconstruction for a sealing cover of an underwater instrument was proved to be satisfactory.

  3. 3D Reconstruction and Restoration Monitoring of Sculptural Artworks by a Multi-Sensor Framework

    Sandro Barone

    2012-12-01

    Full Text Available Nowadays, optical sensors are used to digitize sculptural artworks by exploiting various contactless technologies. Cultural Heritage applications may concern 3D reconstructions of sculptural shapes distinguished by small details distributed over large surfaces. These applications require robust multi-view procedures based on aligning several high resolution 3D measurements. In this paper, the integration of a 3D structured light scanner and a stereo photogrammetric sensor is proposed with the aim of reliably reconstructing large free form artworks. The structured light scanner provides high resolution range maps captured from different views. The stereo photogrammetric sensor measures the spatial location of each view by tracking a marker frame integral to the optical scanner. This procedure allows the computation of the rotation-translation matrix to transpose the range maps from local view coordinate systems to a unique global reference system defined by the stereo photogrammetric sensor. The artwork reconstructions can be further augmented by referring metadata related to restoration processes. In this paper, a methodology has been developed to map metadata to 3D models by capturing spatial references using a passive stereo-photogrammetric sensor. The multi-sensor framework has been experienced through the 3D reconstruction of a Statue of Hope located at the English Cemetery in Florence. This sculptural artwork has been a severe test due to the non-cooperative environment and the complex shape features distributed over a large surface.

  4. Fast vision-based catheter 3D reconstruction

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D.

    2016-07-01

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms.

  5. 动态变形表面三维重建方法研究与实现%Research and realization of 3D reconstruction method for dynamic deformable surface

    史金龙; 刘庆华

    2011-01-01

    This paper presented a method of 3D reconstruction for dynamic deformable surfaces. This method first divided the surface in the first frame into lots of small patches, then optimized the correspondences for all patches in every frame, and fi-nally finished the 3D reconstruction for the dynamic surface. After reconstructing one frame, it performed error detection ac-cording to image NCC and local topology, and re-optimized erroneous patches to improve the robustness. The performance and effectiveness were evaluated by simulated and real data experiments.%提出一种对可变性物体表面的动态变形过程进行三维重建的方法.将图像序列第一帧中物体表面划分成多个图像块,利用优化函数寻找每个图像块在所有帧中的对应关系,最终实现物体运动过程的三维重建;完成每一帧的三维重建后,根据图像关联度和局部拓扑结构对结果进行错误检测,并对出错块进行重新优化.模拟实验、实际数据实验以及与同类算法的比较,验证了该方法的有效性和可行性.

  6. 3D reconstruction of cortical microtubules using multi-angle total internal reflection fluorescence microscopy

    Jin, Luhong; Xiu, Peng; Zhou, Xiaoxu; Fan, Jiannan; Kuang, Cuifang; Liu, Xu; Xu, Yingke

    2017-01-01

    Total internal reflection fluorescence microscopy (TIRFM) has been widely used in biomedical research to visualize cellular processes near the cell surface. In this study, a novel multi-angle ring-illuminated TIRFM system, equipped with two galvo mirrors that are on conjugate plan of a 4f optical system was developed. Multi-angle TIRFM generates images with different penetration depths through the controlled variation of the incident angle of illuminating laser. We presented a method to perform three-dimensional (3-D) reconstruction of microtubules from multi-angle TIRFM images. The performance of our method was validated in simulated microtubules with variable signal-to-noise ratios (SNR) and the axial resolution and accuracy of reconstruction were evaluated in selecting different numbers of illumination angles or in different SNR conditions. In U373 cells, we reconstructed the 3-D localization of microtubules near the cell surface with high resolution using over a hundred different illumination angles. Theoretically, the presented TIRFM setup and 3-D reconstruction method can achieve 40 nm axial resolution in experimental conditions where SNR is as low as 2, with 35 different illumination angles. Moreover, our system and reconstruction method have the potential to be used in live cells to track membrane dynamics in 3-D.

  7. Recovery and Visualization of 3D Structure of Chromosomes from Tomographic Reconstruction Images

    Tsap Leonid V

    2006-01-01

    Full Text Available The objectives of this work include automatic recovery and visualization of a 3D chromosome structure from a sequence of 2D tomographic reconstruction images taken through the nucleus of a cell. Structure is very important for biologists as it affects chromosome functions, behavior of the cell, and its state. Analysis of chromosome structure is significant in the detection of diseases, identification of chromosomal abnormalities, study of DNA structural conformation, in-depth study of chromosomal surface morphology, observation of in vivo behavior of the chromosomes over time, and in monitoring environmental gene mutations. The methodology incorporates thresholding based on a histogram analysis with a polyline splitting algorithm, contour extraction via active contours, and detection of the 3D chromosome structure by establishing corresponding regions throughout the slices. Visualization using point cloud meshing generates a 3D surface. The 3D triangular mesh of the chromosomes provides surface detail and allows a user to interactively analyze chromosomes using visualization software.

  8. The interactive presentation of 3D information obtained from reconstructed datasets and 3D placement of single histological sections with the 3D portable document format

    B.A. de Boer; A.T. Soufan; J. Hagoort; T.J. Mohun; M.J.B. van den Hoff; A. Hasman; F.P.J.M. Voorbraak; A.F.M. Moorman; J.M. Ruijter

    2011-01-01

    Interpretation of the results of anatomical and embryological studies relies heavily on proper visualization of complex morphogenetic processes and patterns of gene expression in a three-dimensional (3D) context. However, reconstruction of complete 3D datasets is time consuming and often researchers

  9. Identification of superficial defects in reconstructed 3D objects using phase-shifting fringe projection

    Madrigal, Carlos A.; Restrepo, Alejandro; Branch, John W.

    2016-09-01

    3D reconstruction of small objects is used in applications of surface analysis, forensic analysis and tissue reconstruction in medicine. In this paper, we propose a strategy for the 3D reconstruction of small objects and the identification of some superficial defects. We applied a technique of projection of structured light patterns, specifically sinusoidal fringes and an algorithm of phase unwrapping. A CMOS camera was used to capture images and a DLP digital light projector for synchronous projection of the sinusoidal pattern onto the objects. We implemented a technique based on a 2D flat pattern as calibration process, so the intrinsic and extrinsic parameters of the camera and the DLP were defined. Experimental tests were performed in samples of artificial teeth, coal particles, welding defects and surfaces tested with Vickers indentation. Areas less than 5cm were studied. The objects were reconstructed in 3D with densities of about one million points per sample. In addition, the steps of 3D description, identification of primitive, training and classification were implemented to recognize defects, such as: holes, cracks, roughness textures and bumps. We found that pattern recognition strategies are useful, when quality supervision of surfaces has enough quantities of points to evaluate the defective region, because the identification of defects in small objects is a demanding activity of the visual inspection.

  10. Recovery and Visualization of 3D Structure of Chromosomes from Tomographic Reconstruction Images

    Babu, S; Liao, P; Shin, M C; Tsap, L V

    2004-04-28

    The objectives of this work include automatic recovery and visualization of a 3D chromosome structure from a sequence of 2D tomographic reconstruction images taken through the nucleus of a cell. Structure is very important for biologists as it affects chromosome functions, behavior of the cell and its state. Chromosome analysis is significant in the detection of deceases and in monitoring environmental gene mutations. The algorithm incorporates thresholding based on a histogram analysis with a polyline splitting algorithm, contour extraction via active contours, and detection of the 3D chromosome structure by establishing corresponding regions throughout the slices. Visualization using point cloud meshing generates a 3D surface. The 3D triangular mesh of the chromosomes provides surface detail and allows a user to interactively analyze chromosomes using visualization software.

  11. Robust 3D reconstruction with an RGB-D camera.

    Wang, Kangkan; Zhang, Guofeng; Bao, Hujun

    2014-11-01

    We present a novel 3D reconstruction approach using a low-cost RGB-D camera such as Microsoft Kinect. Compared with previous methods, our scanning system can work well in challenging cases where there are large repeated textures and significant depth missing problems. For robust registration, we propose to utilize both visual and geometry features and combine SFM technique to enhance the robustness of feature matching and camera pose estimation. In addition, a novel prior-based multicandidates RANSAC is introduced to efficiently estimate the model parameters and significantly speed up the camera pose estimation under multiple correspondence candidates. Even when serious depth missing occurs, our method still can successfully register all frames together. Loop closure also can be robustly detected and handled to eliminate the drift problem. The missing geometry can be completed by combining multiview stereo and mesh deformation techniques. A variety of challenging examples demonstrate the effectiveness of the proposed approach.

  12. 3D-MSCT imaging of bullet trajectory in 3D crime scene reconstruction: two case reports.

    Colard, T; Delannoy, Y; Bresson, F; Marechal, C; Raul, J S; Hedouin, V

    2013-11-01

    Postmortem investigations are increasingly assisted by three-dimensional multi-slice computed tomography (3D-MSCT) and have become more available to forensic pathologists over the past 20years. In cases of ballistic wounds, 3D-MSCT can provide an accurate description of the bullet location, bone fractures and, more interestingly, a clear visual of the intracorporeal trajectory (bullet track). These forensic medical examinations can be combined with tridimensional bullet trajectory reconstructions created by forensic ballistic experts. These case reports present the implementation of tridimensional methods and the results of 3D crime scene reconstruction in two cases. The authors highlight the value of collaborations between police forensic experts and forensic medicine institutes through the incorporation of 3D-MSCT data in a crime scene reconstruction, which is of great interest in forensic science as a clear visual communication tool between experts and the court.

  13. 3D Image Reconstruction from Compton camera data

    Kuchment, Peter

    2016-01-01

    In this paper, we address analytically and numerically the inversion of the integral transform (\\emph{cone} or \\emph{Compton} transform) that maps a function on $\\mathbb{R}^3$ to its integrals over conical surfaces. It arises in a variety of imaging techniques, e.g. in astronomy, optical imaging, and homeland security imaging, especially when the so called Compton cameras are involved. Several inversion formulas are developed and implemented numerically in $3D$ (the much simpler $2D$ case was considered in a previous publication).

  14. 一种光学元件面形三维重建的算法研究%Research on a 3D reconstruction algorithm of surface profile of optical component

    穆绵; 刘缠牢

    2013-01-01

    In order to detect the surface profile of optical component online, a method of 3D surface profile detection based on the combination of linear structured light scanning measurement and stereoscopic vision measurement is proposed. This detection method, however, is a new trial in this field since it is normally used for detecting the elements with high reflectivity. 3D reconstruction algorithm in this detection is achieved by MATLAB and VC+ +. The results of the experiments show that the method can reconstruct the three-dimensional exterior characteristics of the optical component truly and accurately, therefore, research in this field is feasible and rewarding.%为了在线检测光学元件面形,介绍一种基于线结构光扫描测量和立体视觉测量相结合的三维检测方法,目前这种方法多用于检测高反射率的物体,因此将该方法运用于检测光学元件面形是一种新的尝试.实验的三维重建算法是通过MATLAB和VC++软件共同编写程序实现的,实验结果表明,将这种方法运用于检测光学元件是可以真实还原光学元件三维外貌特性的,所以它的研究具有可行性和研究价值.

  15. Automatic system for 3D reconstruction of the chick eye based on digital photographs.

    Wong, Alexander; Genest, Reno; Chandrashekar, Naveen; Choh, Vivian; Irving, Elizabeth L

    2012-01-01

    The geometry of anatomical specimens is very complex and accurate 3D reconstruction is important for morphological studies, finite element analysis (FEA) and rapid prototyping. Although magnetic resonance imaging, computed tomography and laser scanners can be used for reconstructing biological structures, the cost of the equipment is fairly high and specialised technicians are required to operate the equipment, making such approaches limiting in terms of accessibility. In this paper, a novel automatic system for 3D surface reconstruction of the chick eye from digital photographs of a serially sectioned specimen is presented as a potential cost-effective and practical alternative. The system is designed to allow for automatic detection of the external surface of the chick eye. Automatic alignment of the photographs is performed using a combination of coloured markers and an algorithm based on complex phase order likelihood that is robust to noise and illumination variations. Automatic segmentation of the external boundaries of the eye from the aligned photographs is performed using a novel level-set segmentation approach based on a complex phase order energy functional. The extracted boundaries are sampled to construct a 3D point cloud, and a combination of Delaunay triangulation and subdivision surfaces is employed to construct the final triangular mesh. Experimental results using digital photographs of the chick eye show that the proposed system is capable of producing accurate 3D reconstructions of the external surface of the eye. The 3D model geometry is similar to a real chick eye and could be used for morphological studies and FEA.

  16. 3D Measurement and Surfaces Reconstruction Modelling of Large Size Blade of Axia Flow Type%大型轴流式叶片曲面的反求与重构建模

    汪礼发; 赖喜德; 张惟斌; 吴文煜; 龙兵

    2012-01-01

    数字化模型是叶片式流体机械数字化设计与制造的基础,根据大型轴流式水轮机叶片的特点,提出了基于反求技术的大型轴流式水轮机叶片曲面重构方法.采用三坐标测量机测得叶片实体模型的表面数据,通过对点云数据进行平滑、精简处理,使用点云网格化、曲面特征提取,曲面分割及拟合曲面片的曲面重构技术,快速、精确地拟合出叶片曲面模型,提高了建模的精度和效率,为后续数字化设计与制造研究奠定了基础.%The digital model is the base of blade tWe fluid machinery digitized design and manufacture. According to the large axial flow tWe hydraulic turbine characteristics, reverse technology of large axial flow turbine blade surface reconstruction method is presented. Three coordinate measuring maclune is adopted to obtain the surface data of the blade model. The reconstruction of 3D geometrial surfaces of blade were realized through such processing procedures as smoothing and sampling point cloud data, gridding of the point data, extraction of surface feature,partition of surfaces and directly fitting surface partition. This method which realizes the rapid and precise modeling of hydroturbine blade, could serve as a basis for the further digital design and manufacturing research.

  17. Virtual 3D bladder reconstruction for augmented medical records from white light cystoscopy (Conference Presentation)

    Lurie, Kristen L.; Zlatev, Dimitar V.; Angst, Roland; Liao, Joseph C.; Ellerbee, Audrey K.

    2016-02-01

    Bladder cancer has a high recurrence rate that necessitates lifelong surveillance to detect mucosal lesions. Examination with white light cystoscopy (WLC), the standard of care, is inherently subjective and data storage limited to clinical notes, diagrams, and still images. A visual history of the bladder wall can enhance clinical and surgical management. To address this clinical need, we developed a tool to transform in vivo WLC videos into virtual 3-dimensional (3D) bladder models using advanced computer vision techniques. WLC videos from rigid cystoscopies (1280 x 720 pixels) were recorded at 30 Hz followed by immediate camera calibration to control for image distortions. Video data were fed into an automated structure-from-motion algorithm that generated a 3D point cloud followed by a 3D mesh to approximate the bladder surface. The highest quality cystoscopic images were projected onto the approximated bladder surface to generate a virtual 3D bladder reconstruction. In intraoperative WLC videos from 36 patients undergoing transurethral resection of suspected bladder tumors, optimal reconstruction was achieved from frames depicting well-focused vasculature, when the bladder was maintained at constant volume with minimal debris, and when regions of the bladder wall were imaged multiple times. A significant innovation of this work is the ability to perform the reconstruction using video from a clinical procedure collected with standard equipment, thereby facilitating rapid clinical translation, application to other forms of endoscopy and new opportunities for longitudinal studies of cancer recurrence.

  18. FIT3D toolbox: multiple view geometry and 3D reconstruction for Matlab

    Esteban, I.; Dijk, J.; Groen, F.

    2010-01-01

    FIT3D is a Toolbox built for Matlab that aims at unifying and distributing a set of tools that will allow the researcher to obtain a complete 3D model from a set of calibrated images. In this paper we motivate and present the structure of the toolbox in a tutorial and example based approach. Given i

  19. FIT3D Toolbox : multiple view geometry and 3D reconstruction for MATLAB

    Esteban, I.; Dijk, J.; Groen, F.

    2010-01-01

    FIT3D is a Toolbox built for Matlab that aims at unifying and distributing a set of tools that will allow the researcher to obtain a complete 3D model from a set of calibrated images. In this paper we motivate and present the structure of the toolbox in a tutorial and example based approach. Given i

  20. 3D表面重构中的共平面约束及其解的空间分析%Analysis on the Co-plane Constraint and Space of Solution in 3D Surface Reconstruction

    于永彦; 王志坚

    2015-01-01

    基于单图像的3D重构因其先天性约束不足和潜在的巨大价值成为计算机视觉领域的研究热点,被广泛应用于航空航天、机械制造、医疗、考古、地质、犯罪现场复原、建筑设计、城市规划等领域。针对图像中几何元素的共平面性可提供景深信息的特点,提出一种基于交叉曲线共平面性约束的3D重构方案,即对于不平行于投影方向的某一个平面,根据其所含曲线与另一平面中某曲线的交叉构型构造一个线性系统,当一组这样的交叉曲线位于拟求解表面时,可获得精确解。对于含噪系统,要求测得的交点远离平坦面,增加新的约束条件,定义表面的平坦度度量模型,使用SVD法获得极小化线性系统的代数误差的逼近解。由于利用正投影和透视投影的等价性,可将透视投影转化为正投影,从而将这两种投影下的3D重构规划一个框架中。实验表明,这种方法大大提高了3D重构的健壮性,对噪声的敏感性小,可适用于完全未标定结构光等真实场景。%3D Reconstruction based on a single image is the research hotspot of computer vision because of its natural under-constrained and huge potential worthiness, which have been applied to aviation, mechanism, archaeology, geology, recovering the crime scene, architecture and city planning, etc. By the fact that co-plane of geometric item in an image may be provide the information about depth of field, this article suggested a complete new idea for 3D reconstruction based on co-plane constraint about intersection curves. For the planes which do not contain the projection direction, one formulated a linear system by the configuration of across curves between planes.When such a set on curves lied in a solution surface, one can get a accurate solution space. For any noisy systems, a key is that data points would escape from flat and nearly-flat planes, hence to add a new

  1. 3D surface topography formation in ultra-precision turning

    李丽伟; 董申; 程凯

    2004-01-01

    The generation process of 3 D surface topography in ultra-precision turning is analyzed, as the result of superimposing between actual roughness surface, waviness surface and geometrical form texture surface. From the viewpoints of machine technical system and manufacturing process, factors influencing on roughness surface,waviness surface and geometrical form texture surface in ultra-precision turning are discussed further. The 3D topography of ideal roughness surface and actual surface affected by cutting vibration are simulated respectively.

  2. Temperature maps measurements on 3D surfaces with infrared thermography

    Cardone, Gennaro; Ianiro, Andrea [University of Naples Federico II, Department of Aerospace Engineering (DIAS), Naples (Italy); Ioio, Gennaro dello [University of Cambridge, BP Institute for Multiphase Flow, Cambridge, England (United Kingdom); Passaro, Andrea [Alta SpA, Ospedaletto, PI (Italy)

    2012-02-15

    The use of the infrared camera as a temperature transducer in wind tunnel applications is convenient and widespread. Nevertheless, the infrared data are available in the form of 2D images while the observed surfaces are often not planar and the reconstruction of temperature maps over them is a critical task. In this work, after recalling the principles of IR thermography, a methodology to rebuild temperature maps on the surfaces of 3D object is proposed. In particular, an optical calibration is applied to the IR camera by means of a novel target plate with control points. The proposed procedure takes also into account the directional emissivity by estimating the viewing angle. All the needed steps are described and analyzed. The advantages given by the proposed method are shown with an experiment in a hypersonic wind tunnel. (orig.)

  3. 3D-guided CT reconstruction using time-of-flight camera

    Ismail, Mahmoud; Taguchi, Katsuyuki; Xu, Jingyan; Tsui, Benjamin M. W.; Boctor, Emad M.

    2011-03-01

    We propose the use of a time-of-flight (TOF) camera to obtain the patient's body contour in 3D guided imaging reconstruction scheme in CT and C-arm imaging systems with truncated projection. In addition to pixel intensity, a TOF camera provides the 3D coordinates of each point in the captured scene with respect to the camera coordinates. Information from the TOF camera was used to obtain a digitized surface of the patient's body. The digitization points are transformed to X-Ray detector coordinates by registering the two coordinate systems. A set of points corresponding to the slice of interest are segmented to form a 2D contour of the body surface. Radon transform is applied to the contour to generate the 'trust region' for the projection data. The generated 'trust region' is integrated as an input to augment the projection data. It is used to estimate the truncated, unmeasured projections using linear interpolation. Finally the image is reconstructed using the combination of the estimated and the measured projection data. The proposed method is evaluated using a physical phantom. Projection data for the phantom were obtained using a C-arm system. Significant improvement in the reconstructed image quality near the truncation edges was observed using the proposed method as compared to that without truncation correction. This work shows that the proposed 3D guided CT image reconstruction using a TOF camera represents a feasible solution to the projection data truncation problem.

  4. Custom-made, 3D, intraoperative surgical guides for nasal reconstruction.

    Sultan, Babar; Byrne, Patrick J

    2011-11-01

    This article presents the use of an intraoperative surgical guide created by 3D laser surface scanning and rapid prototyping. The authors present outcomes of 3 patients in whom the nasal surgical guide was used intraoperatively for reconstruction of full-thickness, complex nasal defects. This effort highlights the multidisciplinary approach involving a surgeon and anaplastologist integrated with the latest technology to provide patients with the best possible outcomes.

  5. Reconstruction of 3-D Temperature Field in Holographic Interferometry

    2001-01-01

    The tomography technique is commonly used for the reconstruction of holographic interferometry. However, the current reconstruction method doesn't consider the measurement errors which are non-avoidable in the measurement and will degrade the reconstruction quality. The factors affecting the reconstruction quality are analyzed and the distribution law of the reconstruction error with experimental errors is discussed. Finally, a method to improve the reconstruction quality—the Kalman filter method is presented.

  6. 3D Reconstruction of Static Human Body with a Digital Camera

    Remondino, Fabio

    2003-01-01

    Nowadays the interest in 3D reconstruction and modeling of real humans is one of the most challenging problems and a topic of great interest. The human models are used for movies, video games or ergonomics applications and they are usually created with 3D scanner devices. In this paper a new method to reconstruct the shape of a static human is presented. Our approach is based on photogrammetric techniques and uses a sequence of images acquired around a standing person with a digital still video camera or with a camcorder. First the images are calibrated and orientated using a bundle adjustment. After the establishment of a stable adjusted image block, an image matching process is performed between consecutive triplets of images. Finally the 3D coordinates of the matched points are computed with a mean accuracy of ca 2 mm by forward ray intersection. The obtained point cloud can then be triangulated to generate a surface model of the body or a virtual human model can be fitted to the recovered 3D data. Results of the 3D human point cloud with pixel color information are presented.

  7. Surface reconstructions

    Fisher, David J

    2009-01-01

    It is well-known, even at the most elementary level of scientific knowledge, that free surfaces have properties which make them differ from the underlying bulk material. In the case of liquids, it is common knowledge - even among laymen - that the liquid surface acts as though it were a distinct skin-like material. At a slightly more advanced level, it is known that the liquid surface will seek to minimize its total surface energy by minimizing its surface area; thereby affecting its local vapor-pressure and adsorption behavior. In the case of solids too, it has long been known that different

  8. Neurofunctional systems. 3D reconstructions with correlated neuroimaging

    Kretschmann, H.J.; Fiekert, W.; Gerke, M.; Vogt, H.; Weirich, D.; Wesemann, M. [Medizinische Hochschule Hannover (Germany). Abt. Neuroanatomie; Weinrich, W. [Staedtisches Krankenhaus Nordstadt, Hannover (Germany). Abt. fuer Neurologie

    1998-12-31

    This book introduces, for the first time, computer-generated images of the neurofunctional systems of the human brain. These images are more accurate than drawings. The main views presented are of the medial lemniscus system, auditory system, visual system, basal ganglia, corticospinal system, and the limbic system. The arteries and sulci of the cerebral hemispheres are also illustrated by computer. These images provide a three-dimensional orientation of the intracranial space and help, for example, to assess vascular functional disturbance of the brain. Clinicians will find these images valuable for the spatial interpretation of magnetic resonance (MR), computed tomography (CT), and positron emission tomography (PET) images since many neurofunctional systems cannot be visualized as isolated structures in neuroimaging. Computer-assisted surface reconstructions of the neurofunctional systems and the cerebral arteries serve as a basis for constructing these computer-generated images. The surface reconstructions are anatomically realistic having been created from brain sections with minimal deformations. The method of computer graphics, known as ray tracing, produces digital images form these reconstructions. The computer-generated methods are explained. The computer-generated images are accompanied by illustrations and texts on neuroanatomy and clinical practice. The neurofunctional systems of the human brain are also shown in sections so that the reader can mentally reconstruct the neurofunctional systems, thus facilitating the transformation of information into textbooks and atlantes of MR and CT imaging. The aim of this book is acquaint the reader with the three-dimensional aspects of the neurofunctional systems and the cerebral arteries of the human brain using methods of computer graphics. Computer scientists and those interested in this technique are provided with basic neuroanatomic and neurofunctional information. Physicians will have a clearer understanding

  9. Comparison Between Two Generic 3d Building Reconstruction Approaches - Point Cloud Based VS. Image Processing Based

    Dahlke, D.; Linkiewicz, M.

    2016-06-01

    This paper compares two generic approaches for the reconstruction of buildings. Synthesized and real oblique and vertical aerial imagery is transformed on the one hand into a dense photogrammetric 3D point cloud and on the other hand into photogrammetric 2.5D surface models depicting a scene from different cardinal directions. One approach evaluates the 3D point cloud statistically in order to extract the hull of structures, while the other approach makes use of salient line segments in 2.5D surface models, so that the hull of 3D structures can be recovered. With orders of magnitudes more analyzed 3D points, the point cloud based approach is an order of magnitude more accurate for the synthetic dataset compared to the lower dimensioned, but therefor orders of magnitude faster, image processing based approach. For real world data the difference in accuracy between both approaches is not significant anymore. In both cases the reconstructed polyhedra supply information about their inherent semantic and can be used for subsequent and more differentiated semantic annotations through exploitation of texture information.

  10. 3D nanostructure reconstruction based on the SEM imaging principle, and applications.

    Zhu, Fu-Yun; Wang, Qi-Qi; Zhang, Xiao-Sheng; Hu, Wei; Zhao, Xin; Zhang, Hai-Xia

    2014-05-09

    This paper addresses a novel 3D reconstruction method for nanostructures based on the scanning electron microscopy (SEM) imaging principle. In this method, the shape from shading (SFS) technique is employed, to analyze the gray-scale information of a single top-view SEM image which contains all the visible surface information, and finally to reconstruct the 3D surface morphology. It offers not only unobstructed observation from various angles but also the exact physical dimensions of nanostructures. A convenient and commercially available tool (NanoViewer) is developed based on this method for nanostructure analysis and characterization of properties. The reconstruction result coincides well with the SEM nanostructure image and is verified in different ways. With the extracted structure information, subsequent research of the nanostructure can be carried out, such as roughness analysis, optimizing properties by structure improvement and performance simulation with a reconstruction model. Efficient, practical and non-destructive, the method will become a powerful tool for nanostructure surface observation and characterization.

  11. Benchmarking Close-range Structure from Motion 3D Reconstruction Software under Varying Capturing Conditions

    Nikolov, Ivan Adriyanov; Madsen, Claus B.

    2016-01-01

    Structure from Motion 3D reconstruction has become widely used in recent years in a number of fields such as industrial surface in- inspection, archeology, cultural heritage preservation and geomapping. A number of software solutions have been released using variations of this technique....... In this paper we analyse the state of the art of these software applications, by comparing the resultant 3D meshes qualitatively and quantitatively. We propose a number of testing scenarios using different lighting conditions, camera positions and image acquisition methods for the best in-depth analysis...... and discuss the results, the overall performance and the problems present in each software. We employ distance and roughness metrics for evaluating the final reconstruction results....

  12. Order reconstruction phenomena and temperature-driven dynamics in a 3D zenithally bistable device

    Raisch, A.

    2014-07-01

    We model the zenithally bistable device (ZBD) in three dimensions (3D), within the Landau-de Gennes theory, and find three stable static states in 3D without an applied field: the vertically aligned nematic (VAN) state, the hybrid aligned nematic (HAN) state and a third, high-tilt state, which we call the THAN state, with an interior and a surface defect. We recover the order reconstruction (OR) phenomenon around the defects in the HAN and THAN states and the 3D THAN and HAN solutions exhibit stable biaxial cylinders connecting defects on opposite faces of the ZBD device. We demonstrate a two-way temperature-driven switching between high-tilt and low-tilt states through controlled heating and cooling procedures in two dimensions (2D), with no applied fields. © CopyrightEPLA, 2014.

  13. Electrochemical fields within 3D reconstructed microstructures of mixed ionic and electronic conducting devices

    Zhang, Yanxiang; Chen, Yu; Lin, Ye; Yan, Mufu; Harris, William M.; Chiu, Wilson K. S.; Ni, Meng; Chen, Fanglin

    2016-11-01

    The performance and stability of the mixed ionic and electronic conducting (MIEC) membrane devices, such as solid oxide cells (SOCs) and oxygen separation membranes (OSMs) interplay tightly with the transport properties and the three-dimensional (3D) microstructure of the membrane. However, development of the MIEC devices is hindered by the limited knowledge about the distribution of electrochemical fields within the 3D local microstructures, especially at surface and interface. In this work, a generic model conforming to local thermodynamic equilibrium is developed to calculate the electrochemical fields, such as electric potential and oxygen chemical potential, within the 3D microstructure of the MIEC membrane. Stability of the MIEC membrane is evaluated by the distribution of oxygen partial pressure. The cell-level performance such as polarization resistance and voltage vs. current curve can be further calculated. Case studies are performed to demonstrate the capability of the framework by using X-ray computed tomography reconstructed 3D microstructures of a SOC and an OSM. The calculation method demonstrates high computational efficiency for large size 3D tomographic microstructures, and permits parallel calculation. The framework can serve as a powerful tool for correlating the transport properties and the 3D microstructure to the performance and the stability of MIEC devices.

  14. Reconstruction of quadratic curves in 3-D from two or more perspective views

    Balasubramanian R.

    2002-01-01

    Full Text Available The issues involved in the reconstruction of a quadratic curve in 3-D space from arbitrary perspective projections are described in this paper. Correspondence between the projections of the curve on the image planes is assumed to be established. Equations for reconstruction of the 3-D curve, which give the parameters of the 3-D quadratic curve are determined. Uniqueness of the solution in the process of reconstruction is addressed and solved using additional constraints. As practical examples, reconstruction of circles, parabolas and pair of straight lines in 3-D space are demonstrated.

  15. The 3D-index and normal surfaces

    Garoufalidis, Stavros; Hoffman, Neil; Rubinstein, Hyam

    2016-01-01

    Dimofte, Gaiotto and Gukov introduced a powerful invariant, the 3D-index, associated to a suitable ideal triangulation of a 3-manifold with torus boundary components. The 3D-index is a collection of formal power series in $q^{1/2}$ with integer coefficients. Our goal is to explain how the 3D-index is a generating series of normal surfaces associated to the ideal triangulation. This shows a connection of the 3D-index with classical normal surface theory, and fulfills a dream of constructing topological invariants of 3-manifolds using normal surfaces.

  16. Advanced system for 3D dental anatomy reconstruction and 3D tooth movement simulation during orthodontic treatment

    Monserrat, Carlos; Alcaniz-Raya, Mariano L.; Juan, M. Carmen; Grau Colomer, Vincente; Albalat, Salvador E.

    1997-05-01

    This paper describes a new method for 3D orthodontics treatment simulation developed for an orthodontics planning system (MAGALLANES). We develop an original system for 3D capturing and reconstruction of dental anatomy that avoid use of dental casts in orthodontic treatments. Two original techniques are presented, one direct in which data are acquired directly form patient's mouth by mean of low cost 3D digitizers, and one mixed in which data are obtained by 3D digitizing of hydrocollids molds. FOr this purpose we have designed and manufactured an optimized optical measuring system based on laser structured light. We apply these 3D dental models to simulate 3D movement of teeth, including rotations, during orthodontic treatment. The proposed algorithms enable to quantify the effect of orthodontic appliance on tooth movement. The developed techniques has been integrated in a system named MAGALLANES. This original system present several tools for 3D simulation and planning of orthodontic treatments. The prototype system has been tested in several orthodontic clinic with very good results.

  17. 3D geometric reconstruction of thoracic aortic aneurysms

    Mohiaddin Raad H

    2006-11-01

    Full Text Available Abstract Background The thoracic aortic aneurysm (TAA is a pathology that involves an expansion of the aortic diameter in the thoracic aorta, leading to risk of rupture. Recent studies have suggested that internal wall stress, which is affected by TAA geometry and the presence or absence of thrombus, is a more reliable predictor of rupture than the maximum diameter, the current clinical criterion. Accurate reconstruction of TAA geometry is a crucial step in patient-specific stress calculations. Methods In this work, a novel methodology was developed, which combines data from several sets of magnetic resonance (MR images with different levels of detail and different resolutions. Two sets of images were employed to create the final model, which has the highest level of detail for each component of the aneurysm (lumen, thrombus, and wall. A reference model was built by using a single set of images for comparison. This approach was applied to two patient-specific TAAs in the descending thoracic aorta. Results The results of finite element simulations showed differences in stress pattern between the coarse and fine models: higher stress values were found with the coarse model and the differences in predicted maximum wall stress were 30% for patient A and 11% for patient B. Conclusion This paper presents a new approach to the reconstruction of an aneurysm model based on the use of several sets of MR images. This enables more accurate representation of not only the lumen but also the wall surface of a TAA taking account of intraluminal thrombus.

  18. Integration of real-time 3D capture, reconstruction, and light-field display

    Zhang, Zhaoxing; Geng, Zheng; Li, Tuotuo; Pei, Renjing; Liu, Yongchun; Zhang, Xiao

    2015-03-01

    Effective integration of 3D acquisition, reconstruction (modeling) and display technologies into a seamless systems provides augmented experience of visualizing and analyzing real objects and scenes with realistic 3D sensation. Applications can be found in medical imaging, gaming, virtual or augmented reality and hybrid simulations. Although 3D acquisition, reconstruction, and display technologies have gained significant momentum in recent years, there seems a lack of attention on synergistically combining these components into a "end-to-end" 3D visualization system. We designed, built and tested an integrated 3D visualization system that is able to capture in real-time 3D light-field images, perform 3D reconstruction to build 3D model of the objects, and display the 3D model on a large autostereoscopic screen. In this article, we will present our system architecture and component designs, hardware/software implementations, and experimental results. We will elaborate on our recent progress on sparse camera array light-field 3D acquisition, real-time dense 3D reconstruction, and autostereoscopic multi-view 3D display. A prototype is finally presented with test results to illustrate the effectiveness of our proposed integrated 3D visualization system.

  19. 3D reconstruction and standardization of the rat vibrissal cortex for precise registration of single neuron morphology.

    Robert Egger

    Full Text Available The three-dimensional (3D structure of neural circuits is commonly studied by reconstructing individual or small groups of neurons in separate preparations. Investigation of structural organization principles or quantification of dendritic and axonal innervation thus requires integration of many reconstructed morphologies into a common reference frame. Here we present a standardized 3D model of the rat vibrissal cortex and introduce an automated registration tool that allows for precise placement of single neuron reconstructions. We (1 developed an automated image processing pipeline to reconstruct 3D anatomical landmarks, i.e., the barrels in Layer 4, the pia and white matter surfaces and the blood vessel pattern from high-resolution images, (2 quantified these landmarks in 12 different rats, (3 generated an average 3D model of the vibrissal cortex and (4 used rigid transformations and stepwise linear scaling to register 94 neuron morphologies, reconstructed from in vivo stainings, to the standardized cortex model. We find that anatomical landmarks vary substantially across the vibrissal cortex within an individual rat. In contrast, the 3D layout of the entire vibrissal cortex remains remarkably preserved across animals. This allows for precise registration of individual neuron reconstructions with approximately 30 µm accuracy. Our approach could be used to reconstruct and standardize other anatomically defined brain areas and may ultimately lead to a precise digital reference atlas of the rat brain.

  20. Local motion-compensated method for high-quality 3D coronary artery reconstruction.

    Liu, Bo; Bai, Xiangzhi; Zhou, Fugen

    2016-12-01

    The 3D reconstruction of coronary artery from X-ray angiograms rotationally acquired on C-arm has great clinical value. While cardiac-gated reconstruction has shown promising results, it suffers from the problem of residual motion. This work proposed a new local motion-compensated reconstruction method to handle this issue. An initial image was firstly reconstructed using a regularized iterative reconstruction method. Then a 3D/2D registration method was proposed to estimate the residual vessel motion. Finally, the residual motion was compensated in the final reconstruction using the extended iterative reconstruction method. Through quantitative evaluation, it was found that high-quality 3D reconstruction could be obtained and the result was comparable to state-of-the-art method.

  1. Speeding Up the 3D Surface Generator VESTA

    Schlei, B R

    2010-01-01

    The very recent volume-enclosing surface extraction algorithm, VESTA, is revisited. VESTA is used to determine implicit surfaces that are potentially contained in 3D data sets, such as 3D image data and/or 3D simulation data. VESTA surfaces are non-degenerate, i.e., they always enclose a volume that is larger than zero and they never self-intersect, prior to a further processing, e.g., towards isosurfaces. In addition to its ability to deal with local cell ambiguities consistently - and thereby avoiding the accidental generation of holes in the final surfaces - the information of the interior and/or exterior of enclosed 3D volumes is propagated correctly to each of the final surface tiles. Particular emphasis is put here on the speed up of the original formulation of VESTA, while applying the algorithm to 2x2x2 voxel neighborhoods.

  2. Towards 3D facial reconstruction from uncalibrated CCTV footage

    Dam, van Chris; Veldhuis, Raymond; Spreeuwers, Luuk

    2012-01-01

    Facial comparison in 2D is an accepted method in law enforcement and forensic investigation, but pose variations, varying light conditions and low resolution video data can reduce the evidential value of the comparison. Some of these problems might be solved by comparing 3D face models: a face model

  3. Autonomous Planetary 3-D Reconstruction From Satellite Images

    Denver, Troelz

    1999-01-01

    is discussed.Based on such features, 3-D representations may be compiled from two or more 2-D satellite images. The main purposes of such a mapping system are extraction of landing sites, objects of scientific interest and general planetary surveying. All data processing is performed autonomously onboard...

  4. Robust 3D reconstruction system for human jaw modeling

    Yamany, Sameh M.; Farag, Aly A.; Tazman, David; Farman, Allan G.

    1999-03-01

    This paper presents a model-based vision system for dentistry that will replace traditional approaches used in diagnosis, treatment planning and surgical simulation. Dentistry requires accurate 3D representation of the teeth and jaws for many diagnostic and treatment purposes. For example orthodontic treatment involves the application of force systems to teeth over time to correct malocclusion. In order to evaluate tooth movement progress, the orthodontists monitors this movement by means of visual inspection, intraoral measurements, fabrication of plastic models, photographs and radiographs, a process which is both costly and time consuming. In this paper an integrate system has been developed to record the patient's occlusion using computer vision. Data is acquired with an intraoral video camera. A modified shape from shading (SFS) technique, using perspective projection and camera calibration, is used to extract accurate 3D information from a sequence of 2D images of the jaw. A new technique for 3D data registration, using a Grid Closest Point transform and genetic algorithms, is used to register the SFS output. Triangulization is then performed, and a solid 3D model is obtained via a rapid prototype machine.

  5. Online reconstruction of 3D magnetic particle imaging data

    Knopp, T.; Hofmann, M.

    2016-06-01

    Magnetic particle imaging is a quantitative functional imaging technique that allows imaging of the spatial distribution of super-paramagnetic iron oxide particles at high temporal resolution. The raw data acquisition can be performed at frame rates of more than 40 volumes s-1. However, to date image reconstruction is performed in an offline step and thus no direct feedback is available during the experiment. Considering potential interventional applications such direct feedback would be mandatory. In this work, an online reconstruction framework is implemented that allows direct visualization of the particle distribution on the screen of the acquisition computer with a latency of about 2 s. The reconstruction process is adaptive and performs block-averaging in order to optimize the signal quality for a given amount of reconstruction time.

  6. Application of spiral CT image 3D reconstruction in severe talar neck fracture

    HE Fei; HUANG He; DENG Ya-min; Wang Bing; ZHANG Chun-qiang; ZHAO Zhi; TANG Xi-zhang; ZHOU Zhao-wen; ZHAO Xue-ling

    2007-01-01

    Objective:To explore the application of the spiral computerized tomography (CT) image three-dimensional(3D ) reconstruction technique associated with the conventional radiography in the diagnosis and treatment of severe talar neck fracture. Methods:Using the multi-slice spiral CT image 3D reconstruction technique,we analysed 11 cases of talar neck fracture.The fractures were reduced and fixed through a minimal incision and internal fixation with titanium cannulated lag screws. Results:In the 11 cases,the results of CT image 3D reconstruction were in concordance with plain radiograph in 6 case of Hawkins type H.And the remaining 5 cases of Hawkins types Ⅲ and Ⅳ could not be classified exactly only by radiographs,one of whom was misdiagnosed.After using the CT image 3D reconstruction,the 5 cases were classified exactly before osteosynthesis.The classifications of these 11 cases were confirmed finally by surgical findings.The duration of operation were 45-140 min,averaging 81min (including the duration of C-arm fluoroscopy).X-ray exposure time was 6-58 seconds,averaging 22 seconds.The blood loss was less than 100 ml.The fracture union was achieved in 3 months. No nonunion, talus avascular necrosis or joint surface collapse occurred.Postoperative follow-up was from 1 to 25 months.According to Hawkins score,excellent result was found in 6 type Ⅱ cases and 1type Ⅲ case;good result in 1 type Ⅲ case with both medial and lateral malleolar fracture,1 type Ⅲ with medial malleolus fractures and 1 open type Ⅲ;fair result in 1 open type Ⅳ with lateral malleolus fracture. Conclusions:By using the multi-slice spiral CT image 3D reconstruction associated with radiography to diagnose and treat severe talar neck fractures,the accuracy of diagnosis can be improved obviously. Based on this technique,more consummate operational plan can be designed and performed so as to achieve a better therapeutic effect.

  7. 3D Reconstruction of End-Effector in Autonomous Positioning Process Using Depth Imaging Device

    Yanzhu Hu

    2016-01-01

    Full Text Available The real-time calculation of positioning error, error correction, and state analysis has always been a difficult challenge in the process of manipulator autonomous positioning. In order to solve this problem, a simple depth imaging equipment (Kinect is used and Kalman filtering method based on three-frame subtraction to capture the end-effector motion is proposed in this paper. Moreover, backpropagation (BP neural network is adopted to recognize the target. At the same time, batch point cloud model is proposed in accordance with depth video stream to calculate the space coordinates of the end-effector and the target. Then, a 3D surface is fitted by using the radial basis function (RBF and the morphology. The experiments have demonstrated that the end-effector positioning error can be corrected in a short time. The prediction accuracies of both position and velocity have reached 99% and recognition rate of 99.8% has been achieved for cylindrical object. Furthermore, the gradual convergence of the end-effector center (EEC to the target center (TC shows that the autonomous positioning is successful. Simultaneously, 3D reconstruction is also completed to analyze the positioning state. Hence, the proposed algorithm in this paper is competent for autonomous positioning of manipulator. The algorithm effectiveness is also validated by 3D reconstruction. The computational ability is increased and system efficiency is greatly improved.

  8. Implementation of a close range photogrammetric system for 3D reconstruction of a scoliotic torso

    Detchev, Ivan Denislavov

    Scoliosis is a deformity of the human spine most commonly encountered with children. After being detected, periodic examinations via x-rays are traditionally used to measure its progression. However, due to the increased risk of cancer, a non-invasive and radiation-free scoliosis detection and progression monitoring methodology is needed. Quantifying the scoliotic deformity through the torso surface is a valid alternative, because of its high correlation with the internal spine curvature. This work proposes a low-cost multi-camera photogrammetric system for semi-automated 3D reconstruction of a torso surface with sub-millimetre level accuracy. The thesis describes the system design and calibration for optimal accuracy. It also covers the methodology behind the reconstruction and registration procedures. The experimental results include the complete reconstruction of a scoliotic torso mannequin. The final accuracy is evaluated through the goodness of fit between the reconstructed surface and a more accurate set of points measured by a coordinate measuring machine.

  9. 3D reconstruction of tropospheric cirrus clouds by stereovision system

    Nadjib Kouahla, Mohamed; Moreels, Guy; Seridi, Hamid

    2016-07-01

    A stereo imaging method is applied to measure the altitude of cirrus clouds and provide a 3D map of the altitude of the layer centroid. They are located in the high troposphere and, sometimes in the lower stratosphere, between 6 and 10 km high. Two simultaneous images of the same scene are taken with Canon cameras (400D) in two sites distant of 37 Km. Each image processed in order to invert the perspective effect and provide a satellite-type view of the layer. Pairs of matched points that correspond to a physical emissive point in the common area are identified in calculating a correlation coefficient (ZNCC: Zero mean Normalized Cross-correlation or ZSSD: as Zero mean Sum of Squared Differences). This method is suitable for obtaining 3D representations in the case of low-contrast objects. An observational campaign was conducted in June 2014 in France. The images were taken simultaneously at Marnay (47°17'31.5" N, 5°44'58.8" E; altitude 275 m) 25 km northwest of Besancon and in Mont poupet (46°58'31.5" N, 5°52'22.7" E; altitude 600 m) southwest of Besancon at 43 km. 3D maps of the Natural cirrus clouds and artificial like "aircraft trails" are retrieved. They are compared with pseudo-relief intensity maps of the same region. The mean altitude of the cirrus barycenter is located at 8.5 ± 1km on June 11.

  10. 3-D Reconstruction From 2-D Radiographic Images and Its Application to Clinical Veterinary Medicine

    Hamamoto, Kazuhiko; Sato, Motoyoshi

    3D imaging technique is very important and indispensable in diagnosis. The main stream of the technique is one in which 3D image is reconstructed from a set of slice images, such as X-ray CT and MRI. However, these systems require large space and high costs. On the other hand, a low cost and small size 3D imaging system is needed in clinical veterinary medicine, for example, in the case of diagnosis in X-ray car or pasture area. We propose a novel 3D imaging technique using 2-D X-ray radiographic images. This system can be realized by cheaper system than X-ray CT and enables to get 3D image in X-ray car or portable X-ray equipment. In this paper, a 3D visualization technique from 2-D radiographic images is proposed and several reconstructions are shown. These reconstructions are evaluated by veterinarians.

  11. 3D reconstruction of worn parts for flexible remanufacture based on robotic arc welding

    Yin Ziqiang; Zhang Guangjun; Gao Hongming; Wu Lin

    2010-01-01

    3D reconstruction of worn parts is the foundation for remanufacturing system based on robotic arc welding,because it can provide 3D geometric information for robot task plan.In this investigation,a nocwl 3D reconstruction system based on linear structured light vision sensing is developed,This system hardware consists of a MTC368-CB CCD camera,a MLH-645laser projector and a DH-CG300 image grabbing card.This system software is developed to control the image data capture.In order to reconstruct the 3D geometric information from the captured image,a two steps rapid calibration algorithm is proposed.The 3D reconstruction experiment shows a satisfactory result.

  12. 3D Scene Reconstruction Using Omnidirectional Vision and LiDAR: A Hybrid Approach

    Michiel Vlaminck

    2016-11-01

    Full Text Available In this paper, we propose a novel approach to obtain accurate 3D reconstructions of large-scale environments by means of a mobile acquisition platform. The system incorporates a Velodyne LiDAR scanner, as well as a Point Grey Ladybug panoramic camera system. It was designed with genericity in mind, and hence, it does not make any assumption about the scene or about the sensor set-up. The main novelty of this work is that the proposed LiDAR mapping approach deals explicitly with the inhomogeneous density of point clouds produced by LiDAR scanners. To this end, we keep track of a global 3D map of the environment, which is continuously improved and refined by means of a surface reconstruction technique. Moreover, we perform surface analysis on consecutive generated point clouds in order to assure a perfect alignment with the global 3D map. In order to cope with drift, the system incorporates loop closure by determining the pose error and propagating it back in the pose graph. Our algorithm was exhaustively tested on data captured at a conference building, a university campus and an industrial site of a chemical company. Experiments demonstrate that it is capable of generating highly accurate 3D maps in very challenging environments. We can state that the average distance of corresponding point pairs between the ground truth and estimated point cloud approximates one centimeter for an area covering approximately 4000 m 2 . To prove the genericity of the system, it was tested on the well-known Kitti vision benchmark. The results show that our approach competes with state of the art methods without making any additional assumptions.

  13. 3D Scene Reconstruction Using Omnidirectional Vision and LiDAR: A Hybrid Approach.

    Vlaminck, Michiel; Luong, Hiep; Goeman, Werner; Philips, Wilfried

    2016-11-16

    In this paper, we propose a novel approach to obtain accurate 3D reconstructions of large-scale environments by means of a mobile acquisition platform. The system incorporates a Velodyne LiDAR scanner, as well as a Point Grey Ladybug panoramic camera system. It was designed with genericity in mind, and hence, it does not make any assumption about the scene or about the sensor set-up. The main novelty of this work is that the proposed LiDAR mapping approach deals explicitly with the inhomogeneous density of point clouds produced by LiDAR scanners. To this end, we keep track of a global 3D map of the environment, which is continuously improved and refined by means of a surface reconstruction technique. Moreover, we perform surface analysis on consecutive generated point clouds in order to assure a perfect alignment with the global 3D map. In order to cope with drift, the system incorporates loop closure by determining the pose error and propagating it back in the pose graph. Our algorithm was exhaustively tested on data captured at a conference building, a university campus and an industrial site of a chemical company. Experiments demonstrate that it is capable of generating highly accurate 3D maps in very challenging environments. We can state that the average distance of corresponding point pairs between the ground truth and estimated point cloud approximates one centimeter for an area covering approximately 4000 m 2 . To prove the genericity of the system, it was tested on the well-known Kitti vision benchmark. The results show that our approach competes with state of the art methods without making any additional assumptions.

  14. Canine neuroanatomy: Development of a 3D reconstruction and interactive application for undergraduate veterinary education

    Raffan, Hazel; Guevar, Julien; Poyade, Matthieu; Rea, Paul M.

    2017-01-01

    Current methods used to communicate and present the complex arrangement of vasculature related to the brain and spinal cord is limited in undergraduate veterinary neuroanatomy training. Traditionally it is taught with 2-dimensional (2D) diagrams, photographs and medical imaging scans which show a fixed viewpoint. 2D representations of 3-dimensional (3D) objects however lead to loss of spatial information, which can present problems when translating this to the patient. Computer-assisted learning packages with interactive 3D anatomical models have become established in medical training, yet equivalent resources are scarce in veterinary education. For this reason, we set out to develop a workflow methodology creating an interactive model depicting the vasculature of the canine brain that could be used in undergraduate education. Using MR images of a dog and several commonly available software programs, we set out to show how combining image editing, segmentation and surface generation, 3D modeling and texturing can result in the creation of a fully interactive application for veterinary training. In addition to clearly identifying a workflow methodology for the creation of this dataset, we have also demonstrated how an interactive tutorial and self-assessment tool can be incorporated into this. In conclusion, we present a workflow which has been successful in developing a 3D reconstruction of the canine brain and associated vasculature through segmentation, surface generation and post-processing of readily available medical imaging data. The reconstructed model was implemented into an interactive application for veterinary education that has been designed to target the problems associated with learning neuroanatomy, primarily the inability to visualise complex spatial arrangements from 2D resources. The lack of similar resources in this field suggests this workflow is original within a veterinary context. There is great potential to explore this method, and introduce

  15. Object-shape recognition and 3D reconstruction from tactile sensor images.

    Khasnobish, Anwesha; Singh, Garima; Jati, Arindam; Konar, Amit; Tibarewala, D N

    2014-04-01

    This article presents a novel approach of edged and edgeless object-shape recognition and 3D reconstruction from gradient-based analysis of tactile images. We recognize an object's shape by visualizing a surface topology in our mind while grasping the object in our palm and also taking help from our past experience of exploring similar kind of objects. The proposed hybrid recognition strategy works in similar way in two stages. In the first stage, conventional object-shape recognition using linear support vector machine classifier is performed where regional descriptors features have been extracted from the tactile image. A 3D shape reconstruction is also performed depending upon the edged or edgeless objects classified from the tactile images. In the second stage, the hybrid recognition scheme utilizes the feature set comprising both the previously obtained regional descriptors features and some gradient-related information from the reconstructed object-shape image for the final recognition in corresponding four classes of objects viz. planar, one-edged object, two-edged object and cylindrical objects. The hybrid strategy achieves 97.62 % classification accuracy, while the conventional recognition scheme reaches only to 92.60 %. Moreover, the proposed algorithm has been proved to be less noise prone and more statistically robust.

  16. Critical bifurcation surfaces of 3D discrete dynamics

    Michael Sonis

    2000-01-01

    Full Text Available This paper deals with the analytical representation of bifurcations of each 3D discrete dynamics depending on the set of bifurcation parameters. The procedure of bifurcation analysis proposed in this paper represents the 3D elaboration and specification of the general algorithm of the n-dimensional linear bifurcation analysis proposed by the author earlier. It is proven that 3D domain of asymptotic stability (attraction of the fixed point for a given 3D discrete dynamics is bounded by three critical bifurcation surfaces: the divergence, flip and flutter surfaces. The analytical construction of these surfaces is achieved with the help of classical Routh–Hurvitz conditions of asymptotic stability. As an application the adjustment process proposed by T. Puu for the Cournot oligopoly model is considered in detail.

  17. 3D model tools for architecture and archaeology reconstruction

    Vlad, Ioan; Herban, Ioan Sorin; Stoian, Mircea; Vilceanu, Clara-Beatrice

    2016-06-01

    The main objective of architectural and patrimonial survey is to provide a precise documentation of the status quo of the surveyed objects (monuments, buildings, archaeological object and sites) for preservation and protection, for scientific studies and restoration purposes, for the presentation to the general public. Cultural heritage documentation includes an interdisciplinary approach having as purpose an overall understanding of the object itself and an integration of the information which characterize it. The accuracy and the precision of the model are directly influenced by the quality of the measurements realized on field and by the quality of the software. The software is in the process of continuous development, which brings many improvements. On the other side, compared to aerial photogrammetry, close range photogrammetry and particularly architectural photogrammetry is not limited to vertical photographs with special cameras. The methodology of terrestrial photogrammetry has changed significantly and various photographic acquisitions are widely in use. In this context, the present paper brings forward a comparative study of TLS (Terrestrial Laser Scanner) and digital photogrammetry for 3D modeling. The authors take into account the accuracy of the 3D models obtained, the overall costs involved for each technology and method and the 4th dimension - time. The paper proves its applicability as photogrammetric technologies are nowadays used at a large scale for obtaining the 3D model of cultural heritage objects, efficacious in their assessment and monitoring, thus contributing to historic conservation. Its importance also lies in highlighting the advantages and disadvantages of each method used - very important issue for both the industrial and scientific segment when facing decisions such as in which technology to invest more research and funds.

  18. Quantitative Reconstructions of 3D Chemical Nanostructures in Nanowires.

    Rueda-Fonseca, P; Robin, E; Bellet-Amalric, E; Lopez-Haro, M; Den Hertog, M; Genuist, Y; André, R; Artioli, A; Tatarenko, S; Ferrand, D; Cibert, J

    2016-03-01

    Energy dispersive X-ray spectrometry is used to extract a quantitative 3D composition profile of heterostructured nanowires. The analysis of hypermaps recorded along a limited number of projections, with a preliminary calibration of the signal associated with each element, is compared to the intensity profiles calculated for a model structure with successive shells of circular, elliptic, or faceted cross sections. This discrete tomographic technique is applied to II-VI nanowires grown by molecular beam epitaxy, incorporating ZnTe and CdTe and their alloys with Mn and Mg, with typical size down to a few nanometers and Mn or Mg content as low as 10%.

  19. Reconstruction of 3D models of cast sculptures using close-range photogrammetry

    Ž. Santoši

    2015-10-01

    Full Text Available This paper presents the possibilities of application of close-range photogrammetry, based on the Structure-from- Motion (SfM approach, in 3D model’s reconstruction of bronze cast sculptures. Special attention was dedicated to the analysis of image processing strategy, and its impact on the 3D model reconstruction quality. For the purpose of analysis a bust of Nikola Tesla, placed in front of the Faculty of Technical Sciences University of Novi Sad was used. Experimental results indicate that the strategy employing multi-group photo processing provides substantial reductions in processing time while providing satisfactory results in 3D reconstruction.

  20. 3D Reconstruction from 2D Line Drawings only with Visible Vertices and Edges

    WANG Xuan; DONG Li-jun

    2014-01-01

    The human vision system can reconstruct a 3D object easily from single 2D line drawings even if the hidden lines of the object are invisible. Now, there are many methods have emulated this ability, but when the hidden lines of the object are invisible, these methods cannot reconstruct a complete 3D object. Therefore, we put forward a new algorithm to settle this hard problem. Our approach consists of two steps: (1) infer the invisible vertices and edges to complete the line drawing, (2) propose a vertex-based optimization method to reconstruct a 3D object.

  1. 3D reconstruction software comparison for short sequences

    Strupczewski, Adam; Czupryński, BłaŻej

    2014-11-01

    Large scale multiview reconstruction is recently a very popular area of research. There are many open source tools that can be downloaded and run on a personal computer. However, there are few, if any, comparisons between all the available software in terms of accuracy on small datasets that a single user can create. The typical datasets for testing of the software are archeological sites or cities, comprising thousands of images. This paper presents a comparison of currently available open source multiview reconstruction software for small datasets. It also compares the open source solutions with a simple structure from motion pipeline developed by the authors from scratch with the use of OpenCV and Eigen libraries.

  2. Electrical Impedance Tomography: 3D Reconstructions using Scattering Transforms

    Delbary, Fabrice; Hansen, Per Christian; Knudsen, Kim

    2012-01-01

    In three dimensions the Calderon problem was addressed and solved in theory in the 1980s. The main ingredients in the solution of the problem are complex geometrical optics solutions to the conductivity equation and a (non-physical) scattering transform. The resulting reconstruction algorithm....... Convergence estimates are obtained using hyperinterpolation operators. We compare the method numerically to two other approximations by evaluation on two numerical examples. In addition a moment method for the numerical solution of the forward problem is given....

  3. Assessing 3D tunnel position in ACL reconstruction using a novel single image 3D-2D registration

    Kang, X.; Yau, W. P.; Otake, Y.; Cheung, P. Y. S.; Hu, Y.; Taylor, R. H.

    2012-02-01

    The routinely used procedure for evaluating tunnel positions following anterior cruciate ligament (ACL) reconstructions based on standard X-ray images is known to pose difficulties in terms of obtaining accurate measures, especially in providing three-dimensional tunnel positions. This is largely due to the variability in individual knee joint pose relative to X-ray plates. Accurate results were reported using postoperative CT. However, its extensive usage in clinical routine is hampered by its major requirement of having CT scans of individual patients, which is not available for most ACL reconstructions. These difficulties are addressed through the proposed method, which aligns a knee model to X-ray images using our novel single-image 3D-2D registration method and then estimates the 3D tunnel position. In the proposed method, the alignment is achieved by using a novel contour-based 3D-2D registration method wherein image contours are treated as a set of oriented points. However, instead of using some form of orientation weighting function and multiplying it with a distance function, we formulate the 3D-2D registration as a probability density estimation using a mixture of von Mises-Fisher-Gaussian (vMFG) distributions and solve it through an expectation maximization (EM) algorithm. Compared with the ground-truth established from postoperative CT, our registration method in an experiment using a plastic phantom showed accurate results with errors of (-0.43°+/-1.19°, 0.45°+/-2.17°, 0.23°+/-1.05°) and (0.03+/-0.55, -0.03+/-0.54, -2.73+/-1.64) mm. As for the entry point of the ACL tunnel, one of the key measurements, it was obtained with high accuracy of 0.53+/-0.30 mm distance errors.

  4. On 3D Reconstruction of Porous Media by Using Spatial Correlation Functions

    G.A. Papakostas

    2015-11-01

    Full Text Available The challenging process of 3D porous media reconstruction from a single 2D image is investigated in this paper. The reconstruction of the 3D model is based on the statistical information derived from a 2D thin image of the material, by applying a spatial correlation function. For the first time, this paper reviews the commonly used auto-correlation functions for material characterization and discusses their properties making them useful for 3D porous media reconstruction. A set of experiments is conducted in order to analyze the reconstruction capabilities of the studied correlation functions, while some useful conclusions are drawn. Finally, by taking into account the reconstruction performance of the existed correlation functions, some desirable properties that need to be satisfied by an ideal correlation function towards the improvement of the reconstruction accuracy are determined.

  5. 3D reconstruction with two webcams and a laser line projector

    Li, Dongdong; Hui, Bingwei; Qiu, Shaohua; Wen, Gongjian

    2014-09-01

    Three-dimensional (3D) reconstruction is one of the most attractive research topics in photogrammetry and computer vision. Nowadays 3D reconstruction with simple and consumable equipment plays an important role. In this paper, a 3D reconstruction desktop system is built based on binocular stereo vision using a laser scanner. The hardware requirements are a simple commercial hand-held laser line projector and two common webcams for image acquisition. Generally, 3D reconstruction based on passive triangulation methods requires point correspondences among various viewpoints. The development of matching algorithms remains a challenging task in computer vision. In our proposal, with the help of a laser line projector, stereo correspondences are established robustly from epipolar geometry and the laser shadow on the scanned object. To establish correspondences more conveniently, epipolar rectification is employed using Bouguet's method after stereo calibration with a printed chessboard. 3D coordinates of the observed points are worked out with rayray triangulation and reconstruction outliers are removed with the planarity constraint of the laser plane. Dense 3D point clouds are derived from multiple scans under different orientations. Each point cloud is derived by sweeping the laser plane across the object requiring 3D reconstruction. The Iterative Closest Point algorithm is employed to register the derived point clouds. Rigid body transformation between neighboring scans is obtained to get the complete 3D point cloud. Finally polygon meshes are reconstructed from the derived point cloud and color images are used in texture mapping to get a lifelike 3D model. Experiments show that our reconstruction method is simple and efficient.

  6. Assist feature printability prediction by 3-D resist profile reconstruction

    Zheng, Xin; Huang, Jensheng; Chin, Fook; Kazarian, Aram; Kuo, Chun-Chieh

    2012-06-01

    properties may then be used to optimize the printability vs. efficacy of an SRAF either prior to or during an Optical Proximity Correction (OPC) run. The process models that are used during OPC have never been able to reliably predict which SRAFs will print. This appears to be due to the fact that OPC process models are generally created using data that does not include printed subresolution patterns. An enhancement to compact modeling capability to predict Assist Features (AF) printability is developed and discussed. A hypsometric map representing 3-D resist profile was built by applying a first principle approximation to estimate the "energy loss" from the resist top to bottom. Such a 3-D resist profile is an extrapolation of a well calibrated traditional OPC model without any additional information. Assist features are detected at either top of resist (dark field) or bottom of resist (bright field). Such detection can be done by just extracting top or bottom resist models from our 3-D resist model. There is no measurement of assist features needed when we build AF but it can be included if interested but focusing on resist calibration to account for both exposure dosage and focus change sensitivities. This approach significantly increases resist model's capability for predicting printed SRAF accuracy. And we don't need to calibrate an SRAF model in addition to the OPC model. Without increase in computation time, this compact model can draw assist feature contour with real placement and size at any vertical plane. The result is compared and validated with 3-D rigorous modeling as well as SEM images. Since this method does not change any form of compact modeling, it can be integrated into current MBAF solutions without any additional work.

  7. Manifold Constrained Transfer of Facial Geometric Knowledge for 3D Caricature Reconstruction

    Jun-Fa Liu; Wen-Jing He; Tao Chen; Yi-Qiang Chen

    2013-01-01

    3D caricatures are important attractive elements of the interface in virtual environment such as online game.However,very limited 3D caricatures exist in the real world.Meanwhile,creating 3D caricatures manually is rather costly,and even professional skills are needed.This paper proposes a novel and effective manifold transfer algorithm to reconstruct 3D caricatures according to their original 2D caricatures.We first manually create a small dataset with only 100 3D caricature models and use them to initialize the whole 3D dataset.After that,manifold transfer algorithm is carried out to refine the dataset.The algorithm comprises of two steps.The first is to perform manifold alignment between 2D and 3D caricatures to get a "standard" manifold map; the second is to reconstruct all the 3D caricatures based on the manifold map.The proposed approach utilizes and transfers knowledge of 2D caricatures to the target 3D caricatures well.Comparative experiments show that the approach reconstructs 3D caricatures more effectively and the results conform more to the styles of the original 2D caricatures than the Principal Components Analysis (PCA) based method.

  8. Robust Reconstruction and Generalized Dual Hahn Moments Invariants Extraction for 3D Images

    Mesbah, Abderrahim; Zouhri, Amal; El Mallahi, Mostafa; Zenkouar, Khalid; Qjidaa, Hassan

    2017-03-01

    In this paper, we introduce a new set of 3D weighed dual Hahn moments which are orthogonal on a non-uniform lattice and their polynomials are numerically stable to scale, consequent, producing a set of weighted orthonormal polynomials. The dual Hahn is the general case of Tchebichef and Krawtchouk, and the orthogonality of dual Hahn moments eliminates the numerical approximations. The computational aspects and symmetry property of 3D weighed dual Hahn moments are discussed in details. To solve their inability to invariability of large 3D images, which cause to overflow issues, a generalized version of these moments noted 3D generalized weighed dual Hahn moment invariants are presented where whose as linear combination of regular geometric moments. For 3D pattern recognition, a generalized expression of 3D weighted dual Hahn moment invariants, under translation, scaling and rotation transformations, have been proposed where a new set of 3D-GWDHMIs have been provided. In experimental studies, the local and global capability of free and noisy 3D image reconstruction of the 3D-WDHMs has been compared with other orthogonal moments such as 3D Tchebichef and 3D Krawtchouk moments using Princeton Shape Benchmark database. On pattern recognition using the 3D-GWDHMIs like 3D object descriptors, the experimental results confirm that the proposed algorithm is more robust than other orthogonal moments for pattern classification of 3D images with and without noise.

  9. 3D-shaded surface rendering of gadolinium-enhanced MR angiography in congenital heart disease

    Okuda, S.; Kikinis, R.; Dumanli, H. [Surgical Planning Laboratory, Department of Radiology, Brigham and Women' s Hospital, Boston, MA (United States); Department of Radiology, Harvard Medical School, Boston, MA (United States); Geva, T.; Powell, A.J. [Department of Cardiology, Children' s Hospital, Boston, MA (United States); Department of Pediatrics, Harvard Medical School, Boston, MA (United States); Chung, T. [Department of Radiology, Children' s Hospital, Boston, MA (United States)

    2000-08-01

    Background. Gadolinium-enhanced three-dimensional (3D) MR angiography is a useful imaging technique for patients with congenital heart disease. Objective. This study sought to determine the added value of creating 3D shaded surface displays compared to standard maximal intensity projection (MIP) and multiplanar reformatting (MPR) techniques when analyzing 3D MR angiography data. Materials and methods. Seventeen patients (range, 3 months to 51 years old) with a variety of congenital cardiovascular defects underwent gadolinium-enhanced 3D MR angiography of the thorax. Color-coded 3D shaded surface models were rendered from the image data using manual segmentation and computer-based algorithms. Models could be rotated, translocated, or zoomed interactively by the viewer. Information available from the 3D models was compared to analysis based on viewing standard MIP/MPR displays. Results. Median postprocessing time for the 3D models was 6 h (range, 3-25 h) compared to approximately 20 min for MIP/MPR viewing. No additional diagnostic information was gained from 3D model analysis. All major findings with MIP/MPR postprocessing were also apparent on the 3D models. Qualitatively, the 3D models were more easily interpreted and enabled adjacent vessels to be distinguished more readily. Conclusion. Routine use of 3D shaded surface reconstructions for visualization of contrast enhanced MR angiography in congenital heart disease cannot be recommended. 3D surface rendering may be more useful for presenting complex anatomy to an audience unfamiliar with congenital heart disease and as an educational tool. (orig.)

  10. Indoor space 3D visual reconstruction using mobile cart with laser scanner and cameras

    Gashongore, Prince Dukundane; Kawasue, Kikuhito; Yoshida, Kumiko; Aoki, Ryota

    2017-02-01

    Indoor space 3D visual reconstruction has many applications and, once done accurately, it enables people to conduct different indoor activities in an efficient manner. For example, an effective and efficient emergency rescue response can be accomplished in a fire disaster situation by using 3D visual information of a destroyed building. Therefore, an accurate Indoor Space 3D visual reconstruction system which can be operated in any given environment without GPS has been developed using a Human-Operated mobile cart equipped with a laser scanner, CCD camera, omnidirectional camera and a computer. By using the system, accurate indoor 3D Visual Data is reconstructed automatically. The obtained 3D data can be used for rescue operations, guiding blind or partially sighted persons and so forth.

  11. 3D precision measurements of meter sized surfaces using low cost illumination and camera techniques

    Ekberg, Peter; Daemi, Bita; Mattsson, Lars

    2017-04-01

    Using dedicated stereo camera systems and structured light is a well-known method for measuring the 3D shape of large surfaces. However the problem is not trivial when high accuracy, in the range of few tens of microns, is needed. Many error sources need to be handled carefully in order to obtain high quality results. In this study, we present a measurement method based on low-cost camera and illumination solutions combined with high-precision image analysis and a new approach in camera calibration and 3D reconstruction. The setup consists of two ordinary digital cameras and a Gobo projector as a structured light source. A matrix of dots is projected onto the target area. The two cameras capture the images of the projected pattern on the object. The images are processed by advanced subpixel resolution algorithms prior to the application of the 3D reconstruction technique. The strength of the method lays in a different approach for calibration, 3D reconstruction, and high-precision image analysis algorithms. Using a 10 mm pitch pattern of the light dots, the method is capable of reconstructing the 3D shape of surfaces. The precision (1σ repeatability) in the measurements is  cost of ~2% of available advanced measurement techniques. The expanded uncertainty (95% confidence level) is estimated to be 83 µm, with the largest uncertainty contribution coming from the absolute length of the metal ruler used as reference.

  12. Pattern design on 3D triangular garment surfaces

    2007-01-01

    This paper focuses on a pattern design method for a 3D triangular garment surface. Firstly, some definitions of 3D style lines are proposed for designing the boundaries of patterns as drawing straight lines or splines on the triangular surface.Additionally some commonly used style lines are automatically generated to enhance design efficiency. Secondly, after style lines are preprocessed, a searching method is presented for quickly obtaining the boundaries and patches of a pattern on the 3D triangular surface. Finally a new pattern design reuse method is introduced by encoding/decoding the style line information. After style lines are encoded, the pattern design information can be saved in a pattern template and when decoding this template on a new garment surface, it automates the pattern generation for made-to-measure apparel products.

  13. Bayesian 3d velocity field reconstruction with VIRBIuS

    Lavaux, G

    2015-01-01

    I describe a new Bayesian based algorithm to infer the full three dimensional velocity field from observed distances and spectroscopic galaxy catalogues. In addition to the velocity field itself, the algorithm reconstructs true distances, some cosmological parameters and specific non-linearities in the velocity field. The algorithm takes care of selection effects, miscalibration issues and can be easily extended to handle direct fitting of, e.g., the inverse Tully-Fisher relation. I first describe the algorithm in details alongside its performances. This algorithm is implemented in the VIRBIuS (VelocIty Reconstruction using Bayesian Inference Software) software package. I then test it on different mock distance catalogues with a varying complexity of observational issues. The model proved to give robust measurement of velocities for mock catalogues of 3,000 galaxies. I expect the core of the algorithm to scale to tens of thousands galaxies. It holds the promises of giving a better handle on future large and d...

  14. 3D Human cartilage surface characterization by optical coherence tomography

    Brill, Nicolai; Riedel, Jörn; Schmitt, Robert; Tingart, Markus; Truhn, Daniel; Pufe, Thomas; Jahr, Holger; Nebelung, Sven

    2015-10-01

    Early diagnosis and treatment of cartilage degeneration is of high clinical interest. Loss of surface integrity is considered one of the earliest and most reliable signs of degeneration, but cannot currently be evaluated objectively. Optical Coherence Tomography (OCT) is an arthroscopically available light-based non-destructive real-time imaging technology that allows imaging at micrometre resolutions to millimetre depths. As OCT-based surface evaluation standards remain to be defined, the present study investigated the diagnostic potential of 3D surface profile parameters in the comprehensive evaluation of cartilage degeneration. To this end, 45 cartilage samples of different degenerative grades were obtained from total knee replacements (2 males, 10 females; mean age 63.8 years), cut to standard size and imaged using a spectral-domain OCT device (Thorlabs, Germany). 3D OCT datasets of 8  ×  8, 4  ×  4 and 1  ×  1 mm (width  ×  length) were obtained and pre-processed (image adjustments, morphological filtering). Subsequent automated surface identification algorithms were used to obtain the 3D primary profiles, which were then filtered and processed using established algorithms employing ISO standards. The 3D surface profile thus obtained was used to calculate a set of 21 3D surface profile parameters, i.e. height (e.g. Sa), functional (e.g. Sk), hybrid (e.g. Sdq) and segmentation-related parameters (e.g. Spd). Samples underwent reference histological assessment according to the Degenerative Joint Disease classification. Statistical analyses included calculation of Spearman’s rho and assessment of inter-group differences using the Kruskal Wallis test. Overall, the majority of 3D surface profile parameters revealed significant degeneration-dependent differences and correlations with the exception of severe end-stage degeneration and were of distinct diagnostic value in the assessment of surface integrity. None of the 3D

  15. 3D VIRTUAL RECONSTRUCTION OF AN URBAN HISTORICAL SPACE: A CONSIDERATION ON THE METHOD

    M. Galizia

    2012-09-01

    Full Text Available Urban historical spaces are often characterized by a variety of shapes, geometries, volumes, materials. Their virtual reconstruction requires a critical approach in terms of acquired data's density, timing optimization, final product's quality and slimness. The research team has focused its attention on the study on Francesco Neglia square (previously named Saint Thomas square in Enna. This square is an urban space fronted by architectures which present historical and stylistic differences. For example you can find the Saint Thomas'church belfry (in aragounese-catalan stile dated XIV century and the porch, the Anime Sante baroque's church (XVII century, Saint Mary of the Grace's nunnery (XVIII century and as well as some civil buildings of minor importance built in the mid twentieth century. The research has compared two different modeling tools approaches: the first one is based on the construction of triangulated surfaces which are segmented and simplified; the second one is based on the detection of surfaces geometrical features, the extraction of the more significant profiles by using a software dedicated to the elaboration of cloud points and the subsequent mathematical reconstruction by using a 3d modelling software. The following step was aimed to process the virtual reconstruction of urban scene by assembling the single optimized models. This work highlighted the importance of the image of the operator and of its cultural contribution, essential to recognize geometries which generates surfaces in order to create high quality semantic models.

  16. In-line monitoring and reverse 3D model reconstruction in additive manufacturing

    Pedersen, David Bue; Hansen, Hans Nørgaard; Nielsen, Jakob Skov

    2010-01-01

    with traditional measuring equipment such as Coordinate Measurement Machines (CMM's) can not easily be verified. This paradox is addresses by the proposal of an in-line reverse engineering and 3D reconstruction method that alows for a true to scale reconstruction of a part that is being additivelymanufactures on 3......D printing (3DP), or Selective Laser Sintering (SLS) equipment. The system will be implemented and tested on a 3DP machine with modifications developed at the author's university....

  17. Reconstruction of 3d Digital Image of Weepingforsythia Pollen

    Liu, Dongwu; Chen, Zhiwei; Xu, Hongzhi; Liu, Wenqi; Wang, Lina

    Confocal microscopy, which is a major advance upon normal light microscopy, has been used in a number of scientific fields. By confocal microscopy techniques, cells and tissues can be visualized deeply, and three-dimensional images created. Compared with conventional microscopes, confocal microscope improves the resolution of images by eliminating out-of-focus light. Moreover, confocal microscope has a higher level of sensitivity due to highly sensitive light detectors and the ability to accumulate images captured over time. In present studies, a series of Weeping Forsythia pollen digital images (35 images in total) were acquired with confocal microscope, and the three-dimensional digital image of the pollen reconstructed with confocal microscope. Our results indicate that it's a very easy job to analysis threedimensional digital image of the pollen with confocal microscope and the probe Acridine orange (AO).

  18. RECONSTRUCTION OF 3D VECTOR MODELS OF BUILDINGS BY COMBINATION OF ALS, TLS AND VLS DATA

    H. Boulaassal

    2012-09-01

    Full Text Available Airborne Laser Scanning (ALS, Terrestrial Laser Scanning (TLS and Vehicle based Laser Scanning (VLS are widely used as data acquisition methods for 3D building modelling. ALS data is often used to generate, among others, roof models. TLS data has proven its effectiveness in the geometric reconstruction of building façades. Although the operating algorithms used in the processing chain of these two kinds of data are quite similar, their combination should be more investigated. This study explores the possibility of combining ALS and TLS data for simultaneously producing 3D building models from bird point of view and pedestrian point of view. The geometric accuracy of roofs and façades models is different due to the acquisition techniques. In order to take these differences into account, the surfaces composing roofs and façades are extracted with the same algorithm of segmentation. Nevertheless the segmentation algorithm must be adapted to the properties of the different point clouds. It is based on the RANSAC algorithm, but has been applied in a sequential way in order to extract all potential planar clusters from airborne and terrestrial datasets. Surfaces are fitted to planar clusters, allowing edge detection and reconstruction of vector polygons. Models resulting from TLS data are obviously more accurate than those generated from ALS data. Therefore, the geometry of the roofs is corrected and adapted according to the geometry of the corresponding façades. Finally, the effects of the differences between raw ALS and TLS data on the results of the modeling process are analyzed. It is shown that such combination could be used to produce reliable 3D building models.

  19. FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms.

    Kaltdorf, Kristin Verena; Schulze, Katja; Helmprobst, Frederik; Kollmannsberger, Philip; Dandekar, Thomas; Stigloher, Christian

    2017-01-01

    Automatic image reconstruction is critical to cope with steadily increasing data from advanced microscopy. We describe here the Fiji macro 3D ART VeSElecT which we developed to study synaptic vesicles in electron tomograms. We apply this tool to quantify vesicle properties (i) in embryonic Danio rerio 4 and 8 days past fertilization (dpf) and (ii) to compare Caenorhabditis elegans N2 neuromuscular junctions (NMJ) wild-type and its septin mutant (unc-59(e261)). We demonstrate development-specific and mutant-specific changes in synaptic vesicle pools in both models. We confirm the functionality of our macro by applying our 3D ART VeSElecT on zebrafish NMJ showing smaller vesicles in 8 dpf embryos then 4 dpf, which was validated by manual reconstruction of the vesicle pool. Furthermore, we analyze the impact of C. elegans septin mutant unc-59(e261) on vesicle pool formation and vesicle size. Automated vesicle registration and characterization was implemented in Fiji as two macros (registration and measurement). This flexible arrangement allows in particular reducing false positives by an optional manual revision step. Preprocessing and contrast enhancement work on image-stacks of 1nm/pixel in x and y direction. Semi-automated cell selection was integrated. 3D ART VeSElecT removes interfering components, detects vesicles by 3D segmentation and calculates vesicle volume and diameter (spherical approximation, inner/outer diameter). Results are collected in color using the RoiManager plugin including the possibility of manual removal of non-matching confounder vesicles. Detailed evaluation considered performance (detected vesicles) and specificity (true vesicles) as well as precision and recall. We furthermore show gain in segmentation and morphological filtering compared to learning based methods and a large time gain compared to manual segmentation. 3D ART VeSElecT shows small error rates and its speed gain can be up to 68 times faster in comparison to manual annotation

  20. Automatic Texture Reconstruction of 3d City Model from Oblique Images

    Kang, Junhua; Deng, Fei; Li, Xinwei; Wan, Fang

    2016-06-01

    In recent years, the photorealistic 3D city models are increasingly important in various geospatial applications related to virtual city tourism, 3D GIS, urban planning, real-estate management. Besides the acquisition of high-precision 3D geometric data, texture reconstruction is also a crucial step for generating high-quality and visually realistic 3D models. However, most of the texture reconstruction approaches are probably leading to texture fragmentation and memory inefficiency. In this paper, we introduce an automatic framework of texture reconstruction to generate textures from oblique images for photorealistic visualization. Our approach include three major steps as follows: mesh parameterization, texture atlas generation and texture blending. Firstly, mesh parameterization procedure referring to mesh segmentation and mesh unfolding is performed to reduce geometric distortion in the process of mapping 2D texture to 3D model. Secondly, in the texture atlas generation step, the texture of each segmented region in texture domain is reconstructed from all visible images with exterior orientation and interior orientation parameters. Thirdly, to avoid color discontinuities at boundaries between texture regions, the final texture map is generated by blending texture maps from several corresponding images. We evaluated our texture reconstruction framework on a dataset of a city. The resulting mesh model can get textured by created texture without resampling. Experiment results show that our method can effectively mitigate the occurrence of texture fragmentation. It is demonstrated that the proposed framework is effective and useful for automatic texture reconstruction of 3D city model.

  1. Fast 3D Variable-FOV Reconstruction for Parallel Imaging with Localized Sensitivities

    Can, Yiğit Baran; Çukur, Tolga

    2016-01-01

    Several successful iterative approaches have recently been proposed for parallel-imaging reconstructions of variable-density (VD) acquisitions, but they often induce substantial computational burden for non-Cartesian data. Here we propose a generalized variable-FOV PILS reconstruction 3D VD Cartesian and non-Cartesian data. The proposed method separates k-space into non-intersecting annuli based on sampling density, and sets the 3D reconstruction FOV for each annulus based on the respective sampling density. The variable-FOV method is compared against conventional gridding, PILS, and ESPIRiT reconstructions. Results indicate that the proposed method yields better artifact suppression compared to gridding and PILS, and improves noise conditioning relative to ESPIRiT, enabling fast and high-quality reconstructions of 3D datasets.

  2. MULTIPARAMETER MEASUREMENT FOR RACEWAY GROOVE OF BEARING BASED ON 3D RECONSTRUCTION WITH DIGITAL STRUCTURED LIGHT

    He Tao; Zhong Ming; Li Wei; Zhong Yuning; Shi Tielin

    2005-01-01

    A fast 3D reconstruction method based on structured light to measure various parameters of the raceway groove is presented. Digital parallel grating stripes distributed with sine density are projected onto the raceway groove by a DLP projector, and distorting of stripes is happened on the raceway. Simultaneously, aided by three-step phase-shifting approach, three images covered by different stripes are obtained by a high-resolution CCD camera at the same location, thus a more accuracy local topography can be obtained. And then the bearing is rotated on a high precision computer controlled rotational stage. Three images are also obtained as the former step at next planned location triggered by the motor. After one cycle, all images information is combined through the mosaics. As a result, the 3D information of raceway groove can be gained. Not only geometric properties but also surface flaws can be extracted by software. A preliminary hardware system has been built, with which some geometric parameters have been extracted from reconstructed local topography.

  3. Preoperative Planning Using 3D Reconstructions and Virtual Endoscopy for Location of the Frontal Sinus

    Abreu, João Paulo Saraiva

    2011-01-01

    Full Text Available Introduction: Computed tomography (TC generated tridimensional (3D reconstructions allow the observation of cavities and anatomic structures of our body with detail. In our specialty there have been attempts to carry out virtual endoscopies and laryngoscopies. However, such application has been practically abandoned due to its complexity and need for computers with high power of graphic processing. Objective: To demonstrate the production of 3D reconstructions from CTs of patients in personal computers, with a free specific program and compare them to the surgery actual endoscopic images. Method: Prospective study in which the CTs proper files of 10 patients were reconstructed with the program Intage Realia, version 2009, 0, 0, 702 (KGT Inc., Japan. The reconstructions were carried out before the surgeries and a virtual endoscopy was made to assess the recess and frontal sinus region. After this study, the surgery was digitally performed and stored. The actual endoscopic images of the recess and frontal sinus region were compared to the virtual images. Results: The 3D reconstruction and virtual endoscopy were made in 10 patients submitted to the surgery. The virtual images had a large resemblance with the actual surgical images. Conclusion: With relatively simple tools and personal computer, we demonstrated the possibility to generate 3D reconstructions and virtual endoscopies. The preoperative knowledge of the frontal sinus natural draining path location may generate benefits during the performance of surgeries. However, more studies must be developed for the evaluation of the real roles of such 3D reconstructions and virtual endoscopies.

  4. Automated reconstruction of curvilinear fibres from 3D datasets acquired by X-ray microtomography.

    Eberhardt, C N; Clarke, A R

    2002-04-01

    The characterization of fibrous structures is important in both composites and textiles research for relating to the bulk properties of the material. However, the microscopic nature of the fibres and their high densities make them very difficult to characterize. Many techniques have been developed for the measurement and characterization of fibrous structures but they tend to be restricted to measurements on the sample surface or within physical cross-sections. X-ray microtomography can be used to non-destructively probe the internal structure of a range of fibrous materials, providing large amounts of 3D data. A technique has been developed for tracing fibres within 3D datasets acquired by X-ray microtomography and this has been applied to a glass fibre reinforced composite and also a non-woven textile sample. The 3D fibrous structures of both samples were successfully reconstructed and their fibre orientation distributions calculated. This technique enables novel characterizations, such as the through-thickness variation of fibre orientation in non-wovens.

  5. X-ray imaging and 3D reconstruction of in-flight exploding foil initiator flyers

    Willey, T. M.; Champley, K.; Hodgin, R.; Lauderbach, L.; Bagge-Hansen, M.; May, C.; Sanchez, N.; Jensen, B. J.; Iverson, A.; van Buuren, T.

    2016-06-01

    Exploding foil initiators (EFIs), also known as slapper initiators or detonators, offer clear safety and timing advantages over other means of initiating detonation in high explosives. This work outlines a new capability for imaging and reconstructing three-dimensional images of operating EFIs. Flyer size and intended velocity were chosen based on parameters of the imaging system. The EFI metal plasma and plastic flyer traveling at 2.5 km/s were imaged with short ˜80 ps pulses spaced 153.4 ns apart. A four-camera system acquired 4 images from successive x-ray pulses from each shot. The first frame was prior to bridge burst, the 2nd images the flyer about 0.16 mm above the surface but edges of the foil and/or flyer are still attached to the substrate. The 3rd frame captures the flyer in flight, while the 4th shows a completely detached flyer in a position that is typically beyond where slappers strike initiating explosives. Multiple acquisitions at different incident angles and advanced computed tomography reconstruction algorithms were used to produce a 3-dimensional image of the flyer at 0.16 and 0.53 mm above the surface. Both the x-ray images and the 3D reconstruction show a strong anisotropy in the shape of the flyer and underlying foil parallel vs. perpendicular to the initiating current and electrical contacts. These results provide detailed flyer morphology during the operation of the EFI.

  6. Optimized 3D watermarking for minimal surface distortion.

    Bors, Adrian G; Luo, Ming

    2013-05-01

    This paper proposes a new approach to 3D watermarking by ensuring the optimal preservation of mesh surfaces. A new 3D surface preservation function metric is defined consisting of the distance of a vertex displaced by watermarking to the original surface, to the watermarked object surface as well as the actual vertex displacement. The proposed method is statistical, blind, and robust. Minimal surface distortion according to the proposed function metric is enforced during the statistical watermark embedding stage using Levenberg-Marquardt optimization method. A study of the watermark code crypto-security is provided for the proposed methodology. According to the experimental results, the proposed methodology has high robustness against the common mesh attacks while preserving the original object surface during watermarking.

  7. Stereo Vision and 3D Reconstruction on a Processor Network

    Paar, G.; Kuijpers, N.H.L.; Gasser, C.

    1996-01-01

    Surface measurements during outdòoor construction processes ar very costly whenever the measurement process interferes with the construction activities, since machine and man power resources are idle during the data acquisition procedure. Using frame cameras as sensors to provide a rneasurement data

  8. 3D Reconstruction of a Rotating Erupting Prominence

    Thompson, W. T.; Kliem, B.; Toeroek, T.

    2011-01-01

    A bright prominence associated with a coronal mass ejection (CME) was seen erupting from the Sun on 9 April 2008. This prominence was tracked by both the Solar Terrestrial Relations Observatory (STEREO) EUVI and COR1 telescopes, and was seen to rotate about the line of sight a it erupted; therefore, the event has been nicknamed the "Cartwheel CME." The threads of the prominence in the core of the CME quite clearly indicate the structure of a weakly to moderately twisted flux rope throughout the field of view, up to heliocentric heights of 4 solar radii. Although the STEREO separation was 48 deg, it was possible to match some sharp features in the later part of the eruption as seen in the 304 A line in EUVI and in the H-alpha-sensitive bandpass of COR I by both STEREO Ahead and Behind. These features could then be traced out in three-dimensional space, and reprojected into a view in which the eruption is directed toward the observer. The reconstructed view shows that the alignment of the prominence to the vertical axis rotates as it rises up to a leading-edge height of approximately equal to 2.5 solar radii, and then remains approximately constant. The alignment at 2.5 solar radii differs by about 115 deg from the original filament orientation inferred from H-alpha and EUV data, and the height profile of the rotation, obtained here for the first time, shows that two thirds of the total rotation are reached within approximately equal to 0.5 solar radii above the photosphere. These features are well reproduced by numerical simulations of an unstable moderately twisted flux rope embedded in external flux with a relatively strong shear field component.

  9. Virtual surgical planning and 3D printing in repeat calvarial vault reconstruction for craniosynostosis: technical note.

    LoPresti, Melissa; Daniels, Bradley; Buchanan, Edward P; Monson, Laura; Lam, Sandi

    2017-02-03

    Repeat surgery for restenosis after initial nonsyndromic craniosynostosis intervention is sometimes needed. Calvarial vault reconstruction through a healed surgical bed adds a level of intraoperative complexity and may benefit from preoperative and intraoperative definitions of biometric and aesthetic norms. Computer-assisted design and manufacturing using 3D imaging allows the precise formulation of operative plans in anticipation of surgical intervention. 3D printing turns virtual plans into anatomical replicas, templates, or customized implants by using a variety of materials. The authors present a technical note illustrating the use of this technology: a repeat calvarial vault reconstruction that was planned and executed using computer-assisted design and 3D printed intraoperative guides.

  10. Array diagnostics, spatial resolution, and filtering of undesired radiation with the 3D reconstruction algorithm

    Cappellin, C.; Pivnenko, Sergey; Jørgensen, E.

    2013-01-01

    This paper focuses on three important features of the 3D reconstruction algorithm of DIATOOL: the identification of array elements improper functioning and failure, the obtainable spatial resolution of the reconstructed fields and currents, and the filtering of undesired radiation and scattering...

  11. On the 3D reconstruction of diatom frustules : a novel method, applications, and limitations

    Mansilla, Catalina; Novais, Maria Helena; Faber, Enne; Martinez-Martinez, Diego; De Hosson, J. Th.

    2016-01-01

    Because of the importance of diatoms and the lack of information about their third dimension, a new method for the 3D reconstruction is explored, based on digital image correlation of several scanning electron microscope images. The accuracy of the method to reconstruct both centric and pennate (sym

  12. Application aspects of advanced antenna diagnostics with the 3D reconstruction algorithm

    Cappellin, Cecilia; Pivnenko, Sergey

    2015-01-01

    This paper focuses on two important applications of the 3D reconstruction algorithm of the commercial software DIATOOL for antenna diagnostics. The first one is the accurate and detailed identification of array malfunctioning, thanks to the available enhanced spatial resolution of the reconstructed...

  13. A simple approach for 3D reconstruction of the spine from biplanar radiography

    Zhang, Junhua; Shi, Xinling; Lv, Liang; Guo, Fei; Zhang, Yufeng

    2014-04-01

    This paper proposed a simple approach for 3D spinal reconstruction from biplanar radiography. The proposed reconstruction consisted in reconstructing the 3D central curve of the spine based on the epipolar geometry and automatically aligning vertebrae under the constraint of this curve. The vertebral orientations were adjusted by matching the projections of the 3D pedicles with the 2D pedicles in biplanar radiographs. The user interaction time was within one minute for a thoracic spine. Sixteen pairs of radiographs of a thoracic spinal model were used to evaluate the precision and accuracy. The precision was within 3.1 mm for the location and 3.5° for the orientation. The accuracy was within 3.5 mm for the location and 3.9° for the orientation. These results demonstrate that this approach can be a promising tool to obtain the 3D spinal geometry with acceptable user interactions in scoliotic clinics.

  14. Application of generalized regression neural network on fast 3D reconstruction

    Babakhani Asad; DU Zhi-jiang; SUN Li-ning; Kardan Reza; Mianji A. Fereidoun

    2007-01-01

    In robot-assisted surgery projects,researchers should be able to make fast 3 D reconstruction. Usually 2D images acquired with common diagnostic equipments such as UT, CT and MRI are not enough and complete for an accurate 3D reconstruction. There are some interpolation methods for approximating non value voxels which consume large execution time. A novel algorithm is introduced based on generalized regression neural network (GRNN) which can interpolate unknown voxles fast and reliable. The GRNN interpolation is used to produce new 2D images between each two succeeding ultrasonic images. It is shown that the composition of GRNN with image distance transformation can produce higher quality 3D shapes. The results of this method are compared with other interpolation methods practically. It shows this method can decrease overall time consumption on online 3D reconstruction.

  15. AUTOMATIC MODEL SELECTION FOR 3D RECONSTRUCTION OF BUILDINGS FROM SATELLITE IMAGARY

    T. Partovi

    2013-09-01

    Full Text Available Through the improvements of satellite sensor and matching technology, the derivation of 3D models from space borne stereo data obtained a lot of interest for various applications such as mobile navigation, urban planning, telecommunication, and tourism. The automatic reconstruction of 3D building models from space borne point cloud data is still an active research topic. The challenging problem in this field is the relatively low quality of the Digital Surface Model (DSM generated by stereo matching of satellite data comparing to airborne LiDAR data. In order to establish an efficient method to achieve high quality models and complete automation from the mentioned DSM, in this paper a new method based on a model-driven strategy is proposed. For improving the results, refined orthorectified panchromatic images are introduced into the process as additional data. The idea of this method is based on ridge line extraction and analysing height values in direction of and perpendicular to the ridgeline direction. After applying pre-processing to the orthorectified data, some feature descriptors are extracted from the DSM, to improve the automatic ridge line detection. Applying RANSAC a line is fitted to each group of ridge points. Finally these ridge lines are refined by matching them or closing gaps. In order to select the type of roof model the heights of point in extension of the ridge line and height differences perpendicular to the ridge line are analysed. After roof model selection, building edge information is extracted from canny edge detection and parameters derived from the roof parts. Then the best model is fitted to extracted façade roofs based on detected type of model. Each roof is modelled independently and final 3D buildings are reconstructed by merging the roof models with the corresponding walls.

  16. 3D Image Reconstruction from X-Ray Measurements with Overlap

    Klodt, Maria

    2016-01-01

    3D image reconstruction from a set of X-ray projections is an important image reconstruction problem, with applications in medical imaging, industrial inspection and airport security. The innovation of X-ray emitter arrays allows for a novel type of X-ray scanners with multiple simultaneously emitting sources. However, two or more sources emitting at the same time can yield measurements from overlapping rays, imposing a new type of image reconstruction problem based on nonlinear constraints. Using traditional linear reconstruction methods, respective scanner geometries have to be implemented such that no rays overlap, which severely restricts the scanner design. We derive a new type of 3D image reconstruction model with nonlinear constraints, based on measurements with overlapping X-rays. Further, we show that the arising optimization problem is partially convex, and present an algorithm to solve it. Experiments show highly improved image reconstruction results from both simulated and real-world measurements.

  17. A fast 3D reconstruction system with a low-cost camera accessory.

    Zhang, Yiwei; Gibson, Graham M; Hay, Rebecca; Bowman, Richard W; Padgett, Miles J; Edgar, Matthew P

    2015-06-09

    Photometric stereo is a three dimensional (3D) imaging technique that uses multiple 2D images, obtained from a fixed camera perspective, with different illumination directions. Compared to other 3D imaging methods such as geometry modeling and 3D-scanning, it comes with a number of advantages, such as having a simple and efficient reconstruction routine. In this work, we describe a low-cost accessory to a commercial digital single-lens reflex (DSLR) camera system allowing fast reconstruction of 3D objects using photometric stereo. The accessory consists of four white LED lights fixed to the lens of a commercial DSLR camera and a USB programmable controller board to sequentially control the illumination. 3D images are derived for different objects with varying geometric complexity and results are presented, showing a typical height error of <3 mm for a 50 mm sized object.

  18. Inlining 3d Reconstruction, Multi-Source Texture Mapping and Semantic Analysis Using Oblique Aerial Imagery

    Frommholz, D.; Linkiewicz, M.; Poznanska, A. M.

    2016-06-01

    This paper proposes an in-line method for the simplified reconstruction of city buildings from nadir and oblique aerial images that at the same time are being used for multi-source texture mapping with minimal resampling. Further, the resulting unrectified texture atlases are analyzed for façade elements like windows to be reintegrated into the original 3D models. Tests on real-world data of Heligoland/ Germany comprising more than 800 buildings exposed a median positional deviation of 0.31 m at the façades compared to the cadastral map, a correctness of 67% for the detected windows and good visual quality when being rendered with GPU-based perspective correction. As part of the process building reconstruction takes the oriented input images and transforms them into dense point clouds by semi-global matching (SGM). The point sets undergo local RANSAC-based regression and topology analysis to detect adjacent planar surfaces and determine their semantics. Based on this information the roof, wall and ground surfaces found get intersected and limited in their extension to form a closed 3D building hull. For texture mapping the hull polygons are projected into each possible input bitmap to find suitable color sources regarding the coverage and resolution. Occlusions are detected by ray-casting a full-scale digital surface model (DSM) of the scene and stored in pixel-precise visibility maps. These maps are used to derive overlap statistics and radiometric adjustment coefficients to be applied when the visible image parts for each building polygon are being copied into a compact texture atlas without resampling whenever possible. The atlas bitmap is passed to a commercial object-based image analysis (OBIA) tool running a custom rule set to identify windows on the contained façade patches. Following multi-resolution segmentation and classification based on brightness and contrast differences potential window objects are evaluated against geometric constraints and

  19. 3D High Resolution l1-SPIRiT Reconstruction on Gadgetron based Cloud

    Xue, Hui; Kelmann, Peter; Inati, Souheil;

    Applying non-linear reconstruction to high resolution 3D MRI is challenging because of the lengthy computing time needed for those iterative algorithms. To achieve practical processing duration to enable clinical usage of non-linear reconstruction, we have extended previously published Gadgetron...... framework to support distributed computing in a cloud environment. This extension is named GT-Plus. A cloud version of 3D l1-SPIRiT was implemented on the GT-Plus framework. We demonstrate that a 3mins reconstruction could be achieved for 1mm3 isotropic resolution neuro scans with significantly improved...

  20. 3-D reconstruction of neurons from multichannel confocal laser scanning image series.

    Wouterlood, Floris G

    2014-04-10

    A confocal laser scanning microscope (CLSM) collects information from a thin, focal plane and ignores out-of-focus information. Scanning of a specimen, with stepwise axial (Z-) movement of the stage in between each scan, produces Z-series of confocal images of a tissue volume, which then can be used to 3-D reconstruct structures of interest. The operator first configures separate channels (e.g., laser, filters, and detector settings) for each applied fluorochrome and then acquires Z-series of confocal images: one series per channel. Channel signal separation is extremely important. Measures to avoid bleaching are vital. Post-acquisition deconvolution of the image series is often performed to increase resolution before 3-D reconstruction takes place. In the 3-D reconstruction programs described in this unit, reconstructions can be inspected in real time from any viewing angle. By altering viewing angles and by switching channels off and on, the spatial relationships of 3-D-reconstructed structures with respect to structures visualized in other channels can be studied. Since each brand of CLSM, computer program, and 3-D reconstruction package has its own proprietary set of procedures, a general approach is provided in this protocol wherever possible.

  1. Aging and the haptic perception of 3D surface shape

    Norman, J.F.; Kappers, A.M.L.; Beers, A.M.; Scott, A.K.; Norman, H.F.; Koenderink, J.J.

    2011-01-01

    Two experiments evaluated the ability of older and younger adults to perceive the three-dimensional (3D) shape of object surfaces from active touch (haptics). The ages of the older adults ranged from 64 to 84 years, while those of the younger adults ranged from 18 to 27 years. In Experiment 1, the p

  2. Aging and the haptic perception of 3D surface shape

    Norman, J.F.; Kappers, A.M.L.; Beers, A.M.; Scott, A.K.; Norman, H.F.; Koenderink, J.J.

    2010-01-01

    Two experiments evaluated the ability of older and younger adults to perceive the three-dimensional (3D) shape of object surfaces from active touch (haptics). The ages of the older adults ranged from 64 to 84 years, while those of the younger adults ranged from 18 to 27 years. In Experiment 1, the p

  3. Parallel OSEM Reconstruction Algorithm for Fully 3-D SPECT on a Beowulf Cluster.

    Rong, Zhou; Tianyu, Ma; Yongjie, Jin

    2005-01-01

    In order to improve the computation speed of ordered subset expectation maximization (OSEM) algorithm for fully 3-D single photon emission computed tomography (SPECT) reconstruction, an experimental beowulf-type cluster was built and several parallel reconstruction schemes were described. We implemented a single-program-multiple-data (SPMD) parallel 3-D OSEM reconstruction algorithm based on message passing interface (MPI) and tested it with combinations of different number of calculating processors and different size of voxel grid in reconstruction (64×64×64 and 128×128×128). Performance of parallelization was evaluated in terms of the speedup factor and parallel efficiency. This parallel implementation methodology is expected to be helpful to make fully 3-D OSEM algorithms more feasible in clinical SPECT studies.

  4. Evaluation of Model Recognition for Grammar-Based Automatic 3d Building Model Reconstruction

    Yu, Qian; Helmholz, Petra; Belton, David

    2016-06-01

    In recent years, 3D city models are in high demand by many public and private organisations, and the steadily growing capacity in both quality and quantity are increasing demand. The quality evaluation of these 3D models is a relevant issue both from the scientific and practical points of view. In this paper, we present a method for the quality evaluation of 3D building models which are reconstructed automatically from terrestrial laser scanning (TLS) data based on an attributed building grammar. The entire evaluation process has been performed in all the three dimensions in terms of completeness and correctness of the reconstruction. Six quality measures are introduced to apply on four datasets of reconstructed building models in order to describe the quality of the automatic reconstruction, and also are assessed on their validity from the evaluation point of view.

  5. GOTHIC CHURCHES IN PARIS ST GERVAIS ET ST PROTAIS IMAGE MATCHING 3D RECONSTRUCTION TO UNDERSTAND THE VAULTS SYSTEM GEOMETRY

    M. Capone

    2015-02-01

    benefits and the troubles. From a methodological point of view this is our workflow: - theoretical study about geometrical configuration of rib vault systems; - 3D model based on theoretical hypothesis about geometric definition of the vaults' form; - 3D model based on image matching 3D reconstruction methods; - comparison between 3D theoretical model and 3D model based on image matching;

  6. Data acquisition electronics and reconstruction software for real time 3D track reconstruction within the MIMAC project

    Bourrion, O; Grignon, C; Bouly, J L; Richer, J P; Guillaudin, O; Mayet, F; Billard, J; Santos, D

    2011-01-01

    Directional detection of non-baryonic Dark Matter requires 3D reconstruction of low energy nuclear recoils tracks. A gaseous micro-TPC matrix, filled with either 3He, CF4 or C4H10 has been developed within the MIMAC project. A dedicated acquisition electronics and a real time track reconstruction software have been developed to monitor a 512 channel prototype. This autotriggered electronic uses embedded processing to reduce the data transfer to its useful part only, i.e. decoded coordinates of hit tracks and corresponding energy measurements. An acquisition software with on-line monitoring and 3D track reconstruction is also presented.

  7. Underwater 3D Surface Scanning using Structured Light

    Törnblom, Nils

    2010-01-01

    In this thesis project, an underwater 3D scanner based on structured light has been constructed and developed. Two other scanners, based on stereoscopy and a line-swept laser, were also tested. The target application is to examine objects inside the water filled reactor vessel of nuclear power plants. Structured light systems (SLS) use a projector to illuminate the surface of the scanned object, and a camera to capture the surfaces' reflection. By projecting a series of specific line-patterns...

  8. Calculated surface-energy anomaly in the 3d metals

    Aldén, M.; Skriver, Hans Lomholt; Mirbt, S.

    1992-01-01

    Local-spin-density theory and a Green’s-function technique based on the linear muffin-tin orbitals method have been used to calculate the surface energy of the 3d metals. The theory explains the variation of the values derived from measurements of the surface tension of liquid metals including...... the pronounced anomaly occurring between vanadium and nickel in terms of a decrease in the d contribution caused by spin polarization....

  9. Semi-automated 3D leaf reconstruction and analysis of trichome patterning from light microscopic images.

    Henrik Failmezger

    2013-04-01

    Full Text Available Trichomes are leaf hairs that are formed by single cells on the leaf surface. They are known to be involved in pathogen resistance. Their patterning is considered to emerge from a field of initially equivalent cells through the action of a gene regulatory network involving trichome fate promoting and inhibiting factors. For a quantitative analysis of single and double mutants or the phenotypic variation of patterns in different ecotypes, it is imperative to statistically evaluate the pattern reliably on a large number of leaves. Here we present a method that enables the analysis of trichome patterns at early developmental leaf stages and the automatic analysis of various spatial parameters. We focus on the most challenging young leaf stages that require the analysis in three dimensions, as the leaves are typically not flat. Our software TrichEratops reconstructs 3D surface models from 2D stacks of conventional light-microscope pictures. It allows the GUI-based annotation of different stages of trichome development, which can be analyzed with respect to their spatial distribution to capture trichome patterning events. We show that 3D modeling removes biases of simpler 2D models and that novel trichome patterning features increase the sensitivity for inter-accession comparisons.

  10. Analysis of bite marks in foodstuffs by computer tomography (cone beam CT)--3D reconstruction.

    Marques, Jeidson; Musse, Jamilly; Caetano, Catarina; Corte-Real, Francisco; Corte-Real, Ana Teresa

    2013-12-01

    The use of three-dimensional (3D) analysis of forensic evidence is highlighted in comparison with traditional methods. This three-dimensional analysis is based on the registration of the surface from a bitten object. The authors propose to use Cone Beam Computed Tomography (CBCT), which is used in dental practice, in order to study the surface and interior of bitten objects and dental casts of suspects. In this study, CBCT is applied to the analysis of bite marks in foodstuffs, which may be found in a forensic case scenario. 6 different types of foodstuffs were used: chocolate, cheese, apple, chewing gum, pizza and tart (flaky pastry and custard). The food was bitten into and dental casts of the possible suspects were made. The dental casts and bitten objects were registered using an x-ray source and the CBCT equipment iCAT® (Pennsylvania, EUA). The software InVivo5® (Anatomage Inc, EUA) was used to visualize and analyze the tomographic slices and 3D reconstructions of the objects. For each material an estimate of its density was assessed by two methods: HU values and specific gravity. All the used materials were successfully reconstructed as good quality 3D images. The relative densities of the materials in study were compared. Amongst the foodstuffs, the chocolate had the highest density (median value 100.5 HU and 1,36 g/cm(3)), while the pizza showed to have the lowest (median value -775 HU and 0,39 g/cm(3)), on both scales. Through tomographic slices and three-dimensional reconstructions it was possible to perform the metric analysis of the bite marks in all the foodstuffs, except for the pizza. These measurements could also be obtained from the dental casts. The depth of the bite mark was also successfully determined in all the foodstuffs except for the pizza. Cone Beam Computed Tomography has the potential to become an important tool for forensic sciences, namely for the registration and analysis of bite marks in foodstuffs that may be found in a crime

  11. IMPACT OF LEVEL OF DETAILS IN THE 3D RECONSTRUCTION OF TREES FOR MICROCLIMATE MODELING

    E. Bournez

    2016-06-01

    Full Text Available In the 21st century, urban areas undergo specific climatic conditions like urban heat islands which frequency and intensity increase over the years. Towards the understanding and the monitoring of these conditions, vegetation effects on urban climate are studied. It appears that a natural phenomenon, the evapotranspiration of trees, generates a cooling effect in urban environment. In this work, a 3D microclimate model is used to quantify the evapotranspiration of trees in relation with their architecture, their physiology and the climate. These three characteristics are determined with field measurements and data processing. Based on point clouds acquired with terrestrial laser scanner (TLS, the 3D reconstruction of the tree wood architecture is performed. Then the 3D reconstruction of leaves is carried out from the 3D skeleton of vegetative shoots and allometric statistics. With the aim of extending the simulation on several trees simultaneously, it is necessary to apply the 3D reconstruction process on each tree individually. However, as well for the acquisition as for the processing, the 3D reconstruction approach is time consuming. Mobile laser scanners could provide point clouds in a faster way than static TLS, but this implies a lower point density. Also the processing time could be shortened, but under the assumption that a coarser 3D model is sufficient for the simulation. In this context, the criterion of level of details and accuracy of the tree 3D reconstructed model must be studied. In this paper first tests to assess their impact on the determination of the evapotranspiration are presented.

  12. Impact of Level of Details in the 3d Reconstruction of Trees for Microclimate Modeling

    Bournez, E.; Landes, T.; Saudreau, M.; Kastendeuch, P.; Najjar, G.

    2016-06-01

    In the 21st century, urban areas undergo specific climatic conditions like urban heat islands which frequency and intensity increase over the years. Towards the understanding and the monitoring of these conditions, vegetation effects on urban climate are studied. It appears that a natural phenomenon, the evapotranspiration of trees, generates a cooling effect in urban environment. In this work, a 3D microclimate model is used to quantify the evapotranspiration of trees in relation with their architecture, their physiology and the climate. These three characteristics are determined with field measurements and data processing. Based on point clouds acquired with terrestrial laser scanner (TLS), the 3D reconstruction of the tree wood architecture is performed. Then the 3D reconstruction of leaves is carried out from the 3D skeleton of vegetative shoots and allometric statistics. With the aim of extending the simulation on several trees simultaneously, it is necessary to apply the 3D reconstruction process on each tree individually. However, as well for the acquisition as for the processing, the 3D reconstruction approach is time consuming. Mobile laser scanners could provide point clouds in a faster way than static TLS, but this implies a lower point density. Also the processing time could be shortened, but under the assumption that a coarser 3D model is sufficient for the simulation. In this context, the criterion of level of details and accuracy of the tree 3D reconstructed model must be studied. In this paper first tests to assess their impact on the determination of the evapotranspiration are presented.

  13. A new multiresolution method applied to the 3D reconstruction of small bodies

    Capanna, C.; Jorda, L.; Lamy, P. L.; Gesquiere, G.

    2012-12-01

    The knowledge of the three-dimensional (3D) shape of small solar system bodies, such as asteroids and comets, is essential in determining their global physical properties (volume, density, rotational parameters). It also allows performing geomorphological studies of their surface through the characterization of topographic features, such as craters, faults, landslides, grooves, hills, etc.. In the case of small bodies, the shape is often only constrained by images obtained by interplanetary spacecrafts. Several techniques are available to retrieve 3D global shapes from these images. Stereography which relies on control points has been extensively used in the past, most recently to reconstruct the nucleus of comet 9P/Tempel 1 [Thomas (2007)]. The most accurate methods are however photogrammetry and photoclinometry, often used in conjunction with stereography. Stereophotogrammetry (SPG) has been used to reconstruct the shapes of the nucleus of comet 19P/Borrelly [Oberst (2004)] and of the asteroid (21) Lutetia [Preusker (2012)]. Stereophotoclinometry (SPC) has allowed retrieving an accurate shape of the asteroids (25143) Itokawa [Gaskell (2008)] and (2867) Steins [Jorda (2012)]. We present a new photoclinometry method based on the deformation of a 3D triangular mesh [Capanna (2012)] using a multi-resolution scheme which starts from a sphere of 300 facets and yields a shape model with 100; 000 facets. Our strategy is inspired by the "Full Multigrid" method [Botsch (2007)] and consists in going alternatively between two resolutions in order to obtain an optimized shape model at a given resolution before going to the higher resolution. In order to improve the robustness of our method, we use a set of control points obtained by stereography. Our method has been tested on images acquired by the OSIRIS visible camera, aboard the Rosetta spacecraft of the European Space Agency, during the fly-by of asteroid (21) Lutetia in July 2010. We present the corresponding 3D shape

  14. 基于多角度光学投影表面重建的三维自发荧光光源定位算法%A 3D Location Method of Bioluminescence Light Source Based on Multi-view Pro jection Surface Reconstruction

    宁楠楠; 刘侠; 邓可欣; 吴萍; 王坤; 田捷

    2014-01-01

    In bioluminescent tomography imaging (BLT), dual-modality fusion (optical modality and structural modal-ity) can make full use of high accuracy 3D geometrical structures provided by structural modality reconstruct 3D surface light flux distribution and bioluminescence inner light source reconstruction. However, compared with the all-optical modality, dual-modality fusion has the problems of complicated fusion system, high cost compared with all-optical sys-tem, multifarious and exhaustive date processing, and ionizing radiation (for example, CT). Therefore, the 3D location method of bioluminescence light source based on pure optical 3D geometrical structures has significance for BLT. In this paper, we present a 3D location method of bioluminescence light source based on multi-view projection surface recon-struction, and an all-optical bioluminescence tomography system (AOBTS) is developed for this method. The method consists of 3D surface reconstruction based on multi-view optical pro jection, multi-view luminescent seamless integration, calibration and quantification of the surface light flux and internal bioluminescence reconstruction. An in-vivo BALB/C mouse with an implanted luminescent light source are used to evaluate the performance of the new method. Compared with the conventional optical methods, the new method improves not only the 3D surface reconstruction method but also the multi-view luminescent seamless integration. It has realized 3D real mouse bioluminescence light source localization, and the preliminary test proves its potential application in clinical trial.%在自发荧光断层成像(Bioluminescent tomography imaging, BLT)中,双模态融合(光学模态与结构模态)可充分利用结构模态提供的高精度3D 几何结构,重建三维表面荧光光通量分布,进而实现小动物内部荧光光源定位。然而,与纯光学模态相比,双模态融合存在采集系统复杂、成本高、数据处理繁琐及存在电离辐

  15. i-BRUSH: a gaze-contingent virtual paintbrush for dense 3D reconstruction in robotic assisted surgery.

    Visentini-Scarzanella, Marco; Mylonas, George P; Stoyanov, Danail; Yang, Guang-Zhong

    2009-01-01

    With increasing demand on intra-operative navigation and motion compensation during robotic assisted minimally invasive surgery, real-time 3D deformation recovery remains a central problem. Currently the majority of existing methods rely on salient features, where the inherent paucity of distinctive landmarks implies either a semi-dense reconstruction or the use of strong geometrical constraints. In this study, we propose a gaze-contingent depth reconstruction scheme by integrating human perception with semi-dense stereo and p-q based shading information. Depth inference is carried out in real-time through a novel application of Bayesian chains without smoothness priors. The practical value of the scheme is highlighted by detailed validation using a beating heart phantom model with known geometry to verify the performance of gaze-contingent 3D surface reconstruction and deformation recovery.

  16. A 3D terrain reconstruction method of stereo vision based quadruped robot navigation system

    Ge, Zhuo; Zhu, Ying; Liang, Guanhao

    2017-01-01

    To provide 3D environment information for the quadruped robot autonomous navigation system during walking through rough terrain, based on the stereo vision, a novel 3D terrain reconstruction method is presented. In order to solve the problem that images collected by stereo sensors have large regions with similar grayscale and the problem that image matching is poor at real-time performance, watershed algorithm and fuzzy c-means clustering algorithm are combined for contour extraction. Aiming at the problem of error matching, duel constraint with region matching and pixel matching is established for matching optimization. Using the stereo matching edge pixel pairs, the 3D coordinate algorithm is estimated according to the binocular stereo vision imaging model. Experimental results show that the proposed method can yield high stereo matching ratio and reconstruct 3D scene quickly and efficiently.

  17. Efficient Measurement of Shape Dissimilarity between 3D Models Using Z-Buffer and Surface Roving Method

    In Kyu Park

    2002-10-01

    Full Text Available Estimation of the shape dissimilarity between 3D models is a very important problem in both computer vision and graphics for 3D surface reconstruction, modeling, matching, and compression. In this paper, we propose a novel method called surface roving technique to estimate the shape dissimilarity between 3D models. Unlike conventional methods, our surface roving approach exploits a virtual camera and Z-buffer, which is commonly used in 3D graphics. The corresponding points on different 3D models can be easily identified, and also the distance between them is determined efficiently, regardless of the representation types of the 3D models. Moreover, by employing the viewpoint sampling technique, the overall computation can be greatly reduced so that the dissimilarity is obtained rapidly without loss of accuracy. Experimental results show that the proposed algorithm achieves fast and accurate measurement of shape dissimilarity for different types of 3D object models.

  18. 3D reconstruction and digitalization of an archeological site, Itanos, Crete

    Rudy Ercek

    2010-04-01

    Full Text Available The city of Itanos is situated in the North-East of Crete. Between 1994 and 2005, the French School of Archaeology at Athens (Efa and the Center for Mediterranean Studies in Rethymnon carried out excavation campaigns during which a necropolis and an Archaic building have been explored by a team of the CReA. A very close collaboration between archeologists, engineers and computer graphic designers allowed the 3D reconstruction of these remains. The archeologist was able to directly verify his hypotheses during the reconstruction process. In summer 2007 and 2008, a 3D digitalization of Itanos was made in order to insert the 3D reconstructions into the actual landscape.

  19. Reconstruction of Temperature Field in 3-D, Absorbing, Emitting,and Anisotropically Scattering Medium

    ZHAO Jing-de; LIU Ni; ZHONG Ke

    2006-01-01

    The soft measurement technology of flame temperature field is an efficient method to learn the combustion status in furnace. Generally, it reconstructs the temperature field in furnace through the image of flame, which is a process to solve radiative inverse problem. In this paper, the flame of pulverized coal is considered as 3-D, absorbing, emitting,and anisotropically scattering non-gray medium. Through the study on inverse problem of radiative heat transfer, the temperature field in this kind of medium has been reconstructed. The mechanism of 3-D radiative heat transfer in a rectangular media, which is 2 m × 3 m × 5 m and full of CO2, N2 and carbon particles, is studied with Monte Carlo method. The 3-D temperature field in this rectangular space is reconstructed and the influence of particles density profile is discussed.

  20. Reliable Gait Recognition Using 3D Reconstructions and Random Forests - An Anthropometric Approach.

    Sandau, Martin; Heimbürger, Rikke V; Jensen, Karl E; Moeslund, Thomas B; Aanaes, Henrik; Alkjaer, Tine; Simonsen, Erik B

    2016-05-01

    Photogrammetric measurements of bodily dimensions and analysis of gait patterns in CCTV are important tools in forensic investigations but accurate extraction of the measurements are challenging. This study tested whether manual annotation of the joint centers on 3D reconstructions could provide reliable recognition. Sixteen participants performed normal walking where 3D reconstructions were obtained continually. Segment lengths and kinematics from the extremities were manually extracted by eight expert observers. The results showed that all the participants were recognized, assuming the same expert annotated the data. Recognition based on data annotated by different experts was less reliable achieving 72.6% correct recognitions as some parameters were heavily affected by interobserver variability. This study verified that 3D reconstructions are feasible for forensic gait analysis as an improved alternative to conventional CCTV. However, further studies are needed to account for the use of different clothing, field conditions, etc.

  1. Influence of camera calibration conditions on the accuracy of 3D reconstruction.

    Poulin-Girard, Anne-Sophie; Thibault, Simon; Laurendeau, Denis

    2016-02-01

    For stereoscopic systems designed for metrology applications, the accuracy of camera calibration dictates the precision of the 3D reconstruction. In this paper, the impact of various calibration conditions on the reconstruction quality is studied using a virtual camera calibration technique and the design file of a commercially available lens. This technique enables the study of the statistical behavior of the reconstruction task in selected calibration conditions. The data show that the mean reprojection error should not always be used to evaluate the performance of the calibration process and that a low quality of feature detection does not always lead to a high mean reconstruction error.

  2. A multiscale/multiframe approach to 3D PET data reconstruction

    Mendes, Luis; Ferreira, Nuno [Coimbra Univ. (Portugal). Inst. de Biofisica/Biomatematica; ICNAS - Instituto de Ciencias Nucleares Aplicadas a Saude, Coimbra (Portugal); Comtat, Claude [CEA/DSV/12BM, Orsay (France). Service Hospitalier Frederic Joliot

    2011-07-01

    A multiscale/multiframe 3D reconstruction scheme for Positron Emission Tomography is presented. Usually the dimensions of the reconstructed volume or the projection space binning do not change during the image reconstruction process. In this paper we introduce the concept of time frame to the multiscale reconstruction proposed by Raheja et al. This approach can be used for the generation of images reconstructed in near real time using a suitable scale, taking full advantage of list mode reconstruction techniques. When compared with the Maximum Likelihood - Expectation Maximization algorithm (single scale ML-EM), the Multiscale/Multiframe proposed in this work improves the convergence speed in particular in cold regions, as well as performing a fast reconstruction. The generation of different image sequences at different spatial scales and times may be useful to optimize the acquisition clinical protocols on the fly. (orig.)

  3. Aging and the haptic perception of 3D surface shape.

    Norman, J Farley; Kappers, Astrid M L; Beers, Amanda M; Scott, A Kate; Norman, Hideko F; Koenderink, Jan J

    2011-04-01

    Two experiments evaluated the ability of older and younger adults to perceive the three-dimensional (3D) shape of object surfaces from active touch (haptics). The ages of the older adults ranged from 64 to 84 years, while those of the younger adults ranged from 18 to 27 years. In Experiment 1, the participants haptically judged the shape of large (20 cm diameter) surfaces with an entire hand. In contrast, in Experiment 2, the participants explored the shape of small (5 cm diameter) surfaces with a single finger. The haptic surfaces varied in shape index (Koenderink, Solid shape, 1990; Koenderink, Image and Vision Computing, 10, 557-564, 1992) from -1.0 to +1.0 in steps of 0.25. For both types of surfaces (large and small), the participants were able to judge surface shape reliably. The older participants' judgments of surface shape were just as accurate and precise as those of the younger participants. The results of the current study demonstrate that while older adults do possess reductions in tactile sensitivity and acuity, they nevertheless can effectively perceive 3D surface shape from haptic exploration.

  4. Superquadric Based Hierarchical Reconstruction for Virtualizing Free Form Objects from 3D Data

    LIU Weibin; YUAN Baozong

    2001-01-01

    The superquadric description is usedin modeling the virtual objects in AVR (from ActualReality to Virtual Reality).However,due to the in-trinsic property,the superquadric and its deforma-tion extensions (DSQ) are not flexible enough to de-scribe precisely the complex objects with asymmetryand free form surface.To solve the problem,a hierar-chical reconstruction approach in AVR for virtualizingthe objects with superquadric based models from 3Ddata is developed.Firstly,an initial approximation isproduced by a superquadric fit to the 3D data.Then,the crude superquadric fit is refined by fitting theresidue (distance map) with global and local DirectManipulation of Free-Form Deformation (DMFFD).The key elements of the hierarchical method,includ-ing superquadric fit to 3D data,mathematical detailsand the recursive-fitting algorithm for DMFFD,com-putation of distance maps,adaptive refinement anddecimation of polygon mesh under DMFFD,are pro-posed.An implementation example of hierarchicalreconstruction is presented.The proposed approachis shown competent and efficient for virtualizing thecomplex objects into virtual environment.

  5. 3D Reconstruction of the Vortex in a Human Right Ventricle Model using High Speed PIV

    Kheradvar, Arash; Falahatpisheh, Ahmad

    2011-11-01

    This work aims to characterize the formation process and translation of the vortex, which forms along with the trans-tricuspid jet in a realistic model of a human right ventricle (RV). A clear model of the RV made of silicone rubber was carefully casted in real size from echocardiographic data of an adult human heart. The RV model was used in our heart pulsed-flow simulator at KLAB at UCI to perform experiments. Bioprosthetic heart valves in appropriate sizes were used at tricuspid and pulmonary positions. Multi-planar high-speed PIV was performed to capture and reconstruct the 3D flow field with a 1-millisecond time gap between each two velocity frames. λ2 iso-surfaces were used to illustrate the evolution of vortex cores. The highly asymmetric shape of the RV chamber results in a complex 3D trans-tricuspid vortex that forms and translates toward right ventricular outflow tract, and finally departs RV from pulmonary valve. Through this study, -for the first time- the formation, evolution and pathway of the RV vortex have been characterized in vitro.

  6. Ion track reconstruction in 3D using alumina-based fluorescent nuclear track detectors

    Niklas, Martin; Akselrod, Mark S; Abollahi, Amir; Jäkel, Oliver; Greilich, Steffen

    2013-01-01

    Fluorescent nuclear track detectors (FNTDs) based on Al2O3:C,Mg single crystal combined with confocal microscopy provide 3D information on ion tracks with a resolution only limited by light diffraction. FNTDs are also ideal substrates to be coated with cells to engineer cell-fluorescent ion track hybrid detectors. This radiobiological tool enables a novel platform linking cell responses to physical dose deposition on a sub-cellular level in proton and heavy ion therapies. To achieve spatial correlation between single ion hits in the cell coating and its biological response the ion traversals have to be reconstructed in 3D using the depth information gained by the FNTD read-out. FNTDs were coated with a confluent human lung adenocarcinoma epithelial cell layer. Carbon ion irradiation of the hybrid detector was performed perpendicular and angular to the detector surface. In-situ imaging of the fluorescently labeled cell layer and the FNTD was performed in a sequential read-out. Making use of the trajectory info...

  7. GPU-Based 3D Cone-Beam CT Image Reconstruction for Large Data Volume

    Xing Zhao

    2009-01-01

    Full Text Available Currently, 3D cone-beam CT image reconstruction speed is still a severe limitation for clinical application. The computational power of modern graphics processing units (GPUs has been harnessed to provide impressive acceleration of 3D volume image reconstruction. For extra large data volume exceeding the physical graphic memory of GPU, a straightforward compromise is to divide data volume into blocks. Different from the conventional Octree partition method, a new partition scheme is proposed in this paper. This method divides both projection data and reconstructed image volume into subsets according to geometric symmetries in circular cone-beam projection layout, and a fast reconstruction for large data volume can be implemented by packing the subsets of projection data into the RGBA channels of GPU, performing the reconstruction chunk by chunk and combining the individual results in the end. The method is evaluated by reconstructing 3D images from computer-simulation data and real micro-CT data. Our results indicate that the GPU implementation can maintain original precision and speed up the reconstruction process by 110–120 times for circular cone-beam scan, as compared to traditional CPU implementation.

  8. Confocal Image 3D Surface Measurement with Optical Fiber Plate

    WANG Zhao; ZHU Sheng-cheng; LI Bing; TAN Yu-shan

    2004-01-01

    A whole-field 3D surface measurement system for semiconductor wafer inspection is described.The system consists of an optical fiber plate,which can split the light beam into N2 subbeams to realize the whole-field inspection.A special prism is used to separate the illumination light and signal light.This setup is characterized by high precision,high speed and simple structure.

  9. Reliable Gait Recognition Using 3D Reconstructions and Random Forests - An Anthropometric Approach

    Sandau, Martin; Heimbürger, Rikke V.; Jensen, Karl E.

    2016-01-01

    Photogrammetric measurements of bodily dimensions and analysis of gait patterns in CCTV are important tools in forensic investigations but accurate extraction of the measurements are challenging. This study tested whether manual annotation of the joint centers on 3D reconstructions could provide...... expert annotated the data. Recognition based on data annotated by different experts was less reliable achieving 72.6% correct recognitions as some parameters were heavily affected by interobserver variability. This study verified that 3D reconstructions are feasible for forensic gait analysis...

  10. In-process 3D geometry reconstruction of objects produced by direct light projection

    Andersen, Ulrik Vølcker; Pedersen, David Bue; Hansen, Hans Nørgaard

    2013-01-01

    al. 2011), this method has shown its potential with 3D printing (3DP) and selective laser sintering additive manufacturing processes, where it is possible to directly capture the geometrical features of each individual layer during a build job using a digital camera. When considering the process...... equipment such as coordinate measuring machines cannot be verified easily. This problem is addressed by developing an in-line reverse engineering and 3D reconstruction method that allows a true-to-scale reconstruction of a part being additively manufactured. In earlier works (Pedersen et al. 2010; Hansen et...

  11. A new 3D reconstruction method of small solar system bodies

    Capanna, C.; Jorda, L.; Lamy, P.; Gesquiere, G.

    2011-10-01

    The 3D reconstruction of small solar system bodies consitutes an essential step toward understanding and interpreting their physical and geological properties. We propose a new reconstruction method by photoclinometry based on the minimization of the chisquare difference between observed and synthetic images by deformation of a 3D triangular mesh. This method has been tested on images of the two asteroids (2867) Steins and (21) Lutetia observed during ESA's ROSETTA mission, and it will be applied to elaborate digital terrain models from images of the asteroid (4) Vesta, the target of NASA's DAWN spacecraft.

  12. Determining the surface roughness coefficient by 3D Scanner

    Karmen Fifer Bizjak

    2010-12-01

    Full Text Available Currently, several test methods can be used in the laboratory to determine the roughness of rock joint surfaces.However, true roughness can be distorted and underestimated by the differences in the sampling interval of themeasurement methods. Thus, these measurement methods produce a dead zone and distorted roughness profiles.In this paper a new rock joint surface roughness measurement method is presented, with the use of a camera-typethree-dimensional (3D scanner as an alternative to current methods. For this study, the surfaces of ten samples oftuff were digitized by means of a 3D scanner, and the results were compared with the corresponding Rock JointCoefficient (JRC values. Up until now such 3D scanner have been mostly used in the automotive industry, whereastheir use for comparison with obtained JRC coefficient values in rock mechanics is presented here for the first time.The proposed new method is a faster, more precise and more accurate than other existing test methods, and is apromising technique for use in this area of study in the future.

  13. Design Application Translates 2-D Graphics to 3-D Surfaces

    2007-01-01

    Fabric Images Inc., specializing in the printing and manufacturing of fabric tension architecture for the retail, museum, and exhibit/tradeshow communities, designed software to translate 2-D graphics for 3-D surfaces prior to print production. Fabric Images' fabric-flattening design process models a 3-D surface based on computer-aided design (CAD) specifications. The surface geometry of the model is used to form a 2-D template, similar to a flattening process developed by NASA's Glenn Research Center. This template or pattern is then applied in the development of a 2-D graphic layout. Benefits of this process include 11.5 percent time savings per project, less material wasted, and the ability to improve upon graphic techniques and offer new design services. Partners include Exhibitgroup/Giltspur (end-user client: TAC Air, a division of Truman Arnold Companies Inc.), Jack Morton Worldwide (end-user client: Nickelodeon), as well as 3D Exhibits Inc., and MG Design Associates Corp.

  14. Reconstruction of volumetric ultrasound panorama based on improved 3D SIFT.

    Ni, Dong; Chui, Yim Pan; Qu, Yingge; Yang, Xuan; Qin, Jing; Wong, Tien-Tsin; Ho, Simon S H; Heng, Pheng Ann

    2009-10-01

    Registration of ultrasound volumes is a key issue for the reconstruction of volumetric ultrasound panorama. In this paper, we propose an improved three-dimensional (3D) scale invariant feature transform (SIFT) algorithm to globally register ultrasound volumes acquired from dedicated ultrasound probe, where local deformations are corrected by block-based warping algorithm. Original SIFT algorithm is extended to 3D and improved by combining the SIFT detector with Rohr3D detector to extract complementary features and applying the diffusion distance algorithm for robust feature comparison. Extensive experiments have been performed on both phantom and clinical data sets to demonstrate the effectiveness and robustness of our approach.

  15. 3D reconstruction of patient-specific femurs using Coherent Point Drift

    Shaobin Sun

    2013-02-01

    Full Text Available This paper dealt with the problem that the overlapping digital radiographs couldn`t reflect the 3D space information of the patient-specific femur in the orthopaedic surgery diagnosis. A 2D-3D non-rigid registration method based on Coherent Point Drift was proposed to realize the 3D reconstruction of the patient-specific femur before the surgery, which used biplanar digital radiographs of the patient-specific femur and the CT volume data of a generic femur. With the advantages of low cost, fast imaging speed and little radiation to the patients and doctors, this method provided more effective 3D imaging information for the femur diagnosis and preoperative plans. The registration experiments showed that the proposed method recovered the 3D model and the pose of the patient-specific femur effectively with a fast, accurate and robust registration result, which had satisfied the needs of clinical application.

  16. Grammar-based Automatic 3D Model Reconstruction from Terrestrial Laser Scanning Data

    Yu, Q.; Helmholz, P.; Belton, D.; West, G.

    2014-04-01

    The automatic reconstruction of 3D buildings has been an important research topic during the last years. In this paper, a novel method is proposed to automatically reconstruct the 3D building models from segmented data based on pre-defined formal grammar and rules. Such segmented data can be extracted e.g. from terrestrial or mobile laser scanning devices. Two steps are considered in detail. The first step is to transform the segmented data into 3D shapes, for instance using the DXF (Drawing Exchange Format) format which is a CAD data file format used for data interchange between AutoCAD and other program. Second, we develop a formal grammar to describe the building model structure and integrate the pre-defined grammars into the reconstruction process. Depending on the different segmented data, the selected grammar and rules are applied to drive the reconstruction process in an automatic manner. Compared with other existing approaches, our proposed method allows the model reconstruction directly from 3D shapes and takes the whole building into account.

  17. 3D shape measurement of optical free-form surface based on fringe projection

    Li, Shaohui; Liu, Shugui; Zhang, Hongwei

    2011-05-01

    Present a novel method of 3D shape measurement of optical free-from surface based on fringe projection. A virtual reference surface is proposed which can be used to improve the detection efficiency and realize the automation of measuring process. Sinusoidal fringe patterns are projected to the high reflected surface of the measured object. The deflection fringe patterns that modulated by the object surface are captured by the CCD camera. The slope information can be obtained by analyzing the relationship between the phase deflectometry and the slope of the object surface. The wave-front reconstruction method is used to reconstruct the surface. With the application of fringe projection technology the accuracy of optical free-form surfaces measurement could reach the level of tens of micrometer or even micrometer.

  18. Hermite variational implicit surface reconstruction

    PAN RongJiang; MENG XiangXu; WHANGBO TaegKeun

    2009-01-01

    We propose a new technique for reconstructing surfaces from a large set of unorganized 3D data points and their associated normal vectors. The surface is represented as the zero level set of an implicit vol-ume model which fits the data points and normal constraints. Compared with variational implicit sur-faces, we make use of surface normal vectors at data points directly in the implicit model and avoid of introducing manufactured off-surface points. Given n surface point/normal pairs, the proposed method only needs to solve an n×n positive definite linear system. It allows fitting large datasets effectively and robustly. We demonstrate the performance of the proposed method with both globally supported and compactly supported radial basis functions on several datasets.

  19. 3D reconstructions with pixel-based images are made possible by digitally clearing plant and animal tissue

    Reconstruction of 3D images from a series of 2D images has been restricted by the limited capacity to decrease the opacity of surrounding tissue. Commercial software that allows color-keying and manipulation of 2D images in true 3D space allowed us to produce 3D reconstructions from pixel based imag...

  20. Pancreaticoduodenectomy assisted by 3-D visualization reconstruction and portal vein arterialization

    Su, Zhao-jie; Li, Wen-Gang; Huang, Jun-li; Xiao, Lin-feng; Chen, Fu-zhen; WANG, BO-LIANG

    2016-01-01

    Abstract Background: Three-dimensional visualization reconstruction, the 3-D visualization model reconstructed by software using 2-D CT images, has been widely applied in medicine; but it has rarely been applied in pancreaticoduodenectomy. Although the hepatic artery is very important for the liver, it has to be removed when tumor invades it. Therefore, portal vein arterialization has been used in clinic as a remedial measure, but there still is professional debate on portal vein arterializat...

  1. 3D Reconstruction from X-ray Fluoroscopy for Clinical Veterinary Medicine using Differential Volume Rendering

    Khongsomboon, Khamphong; Hamamoto, Kazuhiko; Kondo, Shozo

    3D reconstruction from ordinary X-ray equipment which is not CT or MRI is required in clinical veterinary medicine. Authors have already proposed a 3D reconstruction technique from X-ray photograph to present bone structure. Although the reconstruction is useful for veterinary medicine, the thechnique has two problems. One is about exposure of X-ray and the other is about data acquisition process. An x-ray equipment which is not special one but can solve the problems is X-ray fluoroscopy. Therefore, in this paper, we propose a method for 3D-reconstruction from X-ray fluoroscopy for clinical veterinary medicine. Fluoroscopy is usually used to observe a movement of organ or to identify a position of organ for surgery by weak X-ray intensity. Since fluoroscopy can output a observed result as movie, the previous two problems which are caused by use of X-ray photograph can be solved. However, a new problem arises due to weak X-ray intensity. Although fluoroscopy can present information of not only bone structure but soft tissues, the contrast is very low and it is very difficult to recognize some soft tissues. It is very useful to be able to observe not only bone structure but soft tissues clearly by ordinary X-ray equipment in the field of clinical veterinary medicine. To solve this problem, this paper proposes a new method to determine opacity in volume rendering process. The opacity is determined according to 3D differential coefficient of 3D reconstruction. This differential volume rendering can present a 3D structure image of multiple organs volumetrically and clearly for clinical veterinary medicine. This paper shows results of simulation and experimental investigation of small dog and evaluation by veterinarians.

  2. Error Evaluation in a Stereovision-Based 3D Reconstruction System

    Kohler Sophie

    2010-01-01

    Full Text Available The work presented in this paper deals with the performance analysis of the whole 3D reconstruction process of imaged objects, specifically of the set of geometric primitives describing their outline and extracted from a pair of images knowing their associated camera models. The proposed analysis focuses on error estimation for the edge detection process, the starting step for the whole reconstruction procedure. The fitting parameters describing the geometric features composing the workpiece to be evaluated are used as quality measures to determine error bounds and finally to estimate the edge detection errors. These error estimates are then propagated up to the final 3D reconstruction step. The suggested error analysis procedure for stereovision-based reconstruction tasks further allows evaluating the quality of the 3D reconstruction. The resulting final error estimates enable lastly to state if the reconstruction results fulfill a priori defined criteria, for example, fulfill dimensional constraints including tolerance information, for vision-based quality control applications for example.

  3. Sample based 3D face reconstruction from a single frontal image by adaptive locally linear embedding

    ZHANG Jian; ZHUANG Yue-ting

    2007-01-01

    In this paper, we propose a highly automatic approach for 3D photorealistic face reconstruction from a single frontal image. The key point of our work is the implementation of adaptive manifold learning approach. Beforehand, an active appearance model (AAM) is trained for automatic feature extraction and adaptive locally linear embedding (ALLE) algorithm is utilized to reduce the dimensionality of the 3D database. Then, given an input frontal face image, the corresponding weights between 3D samples and the image are synthesized adaptively according to the AAM selected facial features. Finally, geometry reconstruction is achieved by linear weighted combination of adaptively selected samples. Radial basis function (RBF) is adopted to map facial texture from the frontal image to the reconstructed face geometry. The texture of invisible regions between the face and the ears is interpolated by sampling from the frontal image. This approach has several advantages: (1) Only a single frontal face image is needed for highly automatic face reconstruction; (2) Compared with former works, our reconstruction approach provides higher accuracy; (3) Constraint based RBF texture mapping provides natural appearance for reconstructed face.

  4. Computer-based image analysis in radiological diagnostics and image-guided therapy 3D-Reconstruction, contrast medium dynamics, surface analysis, radiation therapy and multi-modal image fusion

    Beier, J

    2001-01-01

    This book deals with substantial subjects of postprocessing and analysis of radiological image data, a particular emphasis was put on pulmonary themes. For a multitude of purposes the developed methods and procedures can directly be transferred to other non-pulmonary applications. The work presented here is structured in 14 chapters, each describing a selected complex of research. The chapter order reflects the sequence of the processing steps starting from artefact reduction, segmentation, visualization, analysis, therapy planning and image fusion up to multimedia archiving. In particular, this includes virtual endoscopy with three different scene viewers (Chap. 6), visualizations of the lung disease bronchiectasis (Chap. 7), surface structure analysis of pulmonary tumors (Chap. 8), quantification of contrast medium dynamics from temporal 2D and 3D image sequences (Chap. 9) as well as multimodality image fusion of arbitrary tomographical data using several visualization techniques (Chap. 12). Thus, the softw...

  5. Investigation Into the Accuracy of 3D Surface Roughness Characteristics

    Kumermanis, M.; Rudzitis, J.; Mozga, N.; Ancans, A.; Grislis, A.

    2014-04-01

    The existing standards for surface roughness cover only two dimensions, while in reality this is three-dimensional (3D). In particular, the 3D surface roughness parameters are important for solving the contact surface mechanics problems as related to the accuracy of 3D surface roughness characteristics. One of the most important factors for determination of 3D characteristics is the number of data points (NDP) on the x- and y-axes (i.e. in cut-off length). The NDP has a profound effect on the accuracy of measurement results, measuring time and volume of the output data (especially along the y-axis, where the NDP is identical to the number of parallel profiles). At a too small NDP the results will be incorrect and with too broad scatter, while a too large NDP - though not enlarging the range of basic information - considerably increases the measuring time. Therefore, the aim of the work was to find the optimal NDP for such surface processing methods as grinding, spark erosion and shot methods of surface treatment. Eksistējošie virsmas raupjuma standarti apskata virsmas raupjumu tikai divās dimensijās. Tomēr reālais virsmas raupjums pēc savas dabas ir trīsdimensiju (3D) objekts. Līdz ar to virsmas raupjums ir jāraksturo ar 3D parametriem. Un no šo parametru noteikšanas precizitātes ir atkarīgi tālākie virsmas aprēķini, piemēram, virsmu kontaktēšanās process. Viens no svarīgākajiem faktoriem, raksturojot virsmas raupjumu 3D, pielietojot kontakta tipa mēriekārtas, ir datu punktu skaits pa abām mērīšanas asīm x un y. Ar datu punktu skaitu mēs saprotam to skaitu mērīšanas bāzes garumā. Datu punktu skaits būtiski ietekmē sagaidāmo mērījumu rezultātu precizitāti, mērīšanai nepieciešamo laiku un izejas datu faila izmērus (sevišķi y-ass virzienā, kur katrs datu punkts ir paralēls profils). Datu punktu skaitam ir jābūt optimālam. Pārāk mazs punktu skaits noved pie neprecīziem rezultātiem un lielas to izkliedes, savuk

  6. Design of a 3-D surface scanner for lower limb prosthetics: a technical note.

    Commean, P K; Smith, K E; Vannier, M W

    1996-07-01

    A three-dimensional (3-D) noncontact optical surface range sensing imaging system that captures the entire circumferential and distal end surfaces of lower limb residua in less than 1 second has been developed. The optical surface scanner (OSS) consists of four charge injection device (CID) cameras and three white light projectors, mounted on a rigid frame surrounding the subject's residuum, allowing 360 degrees surface coverage of the lower residual limb. Anatomic 3-D computer graphics reconstruction of a residuum surface, recorded with the OSS imaging system, is used for visualization and measurement. One cubical and two spherical calibration test objects were used to obtain a system precision of less than 1 mm. In a study conducted with 13 persons with below knee (BK) amputation, the OSS system was compared to calipers, electromagnetic digitizer, and volumetric computed tomography with better than 1 mm precision on plaster positive casts and approximately 2 mm on the residual limbs.

  7. 3D SURFACE GENERATION FROM AERIAL THERMAL IMAGERY

    B. Khodaei

    2015-12-01

    Full Text Available Aerial thermal imagery has been recently applied to quantitative analysis of several scenes. For the mapping purpose based on aerial thermal imagery, high accuracy photogrammetric process is necessary. However, due to low geometric resolution and low contrast of thermal imaging sensors, there are some challenges in precise 3D measurement of objects. In this paper the potential of thermal video in 3D surface generation is evaluated. In the pre-processing step, thermal camera is geometrically calibrated using a calibration grid based on emissivity differences between the background and the targets. Then, Digital Surface Model (DSM generation from thermal video imagery is performed in four steps. Initially, frames are extracted from video, then tie points are generated by Scale-Invariant Feature Transform (SIFT algorithm. Bundle adjustment is then applied and the camera position and orientation parameters are determined. Finally, multi-resolution dense image matching algorithm is used to create 3D point cloud of the scene. Potential of the proposed method is evaluated based on thermal imaging cover an industrial area. The thermal camera has 640×480 Uncooled Focal Plane Array (UFPA sensor, equipped with a 25 mm lens which mounted in the Unmanned Aerial Vehicle (UAV. The obtained results show the comparable accuracy of 3D model generated based on thermal images with respect to DSM generated from visible images, however thermal based DSM is somehow smoother with lower level of texture. Comparing the generated DSM with the 9 measured GCPs in the area shows the Root Mean Square Error (RMSE value is smaller than 5 decimetres in both X and Y directions and 1.6 meters for the Z direction.

  8. Estimation of 3D reconstruction errors in a stereo-vision system

    Belhaoua, A.; Kohler, S.; Hirsch, E.

    2009-06-01

    The paper presents an approach for error estimation for the various steps of an automated 3D vision-based reconstruction procedure of manufactured workpieces. The process is based on a priori planning of the task and built around a cognitive intelligent sensory system using so-called Situation Graph Trees (SGT) as a planning tool. Such an automated quality control system requires the coordination of a set of complex processes performing sequentially data acquisition, its quantitative evaluation and the comparison with a reference model (e.g., CAD object model) in order to evaluate quantitatively the object. To ensure efficient quality control, the aim is to be able to state if reconstruction results fulfill tolerance rules or not. Thus, the goal is to evaluate independently the error for each step of the stereo-vision based 3D reconstruction (e.g., for calibration, contour segmentation, matching and reconstruction) and then to estimate the error for the whole system. In this contribution, we analyze particularly the segmentation error due to localization errors for extracted edge points supposed to belong to lines and curves composing the outline of the workpiece under evaluation. The fitting parameters describing these geometric features are used as quality measure to determine confidence intervals and finally to estimate the segmentation errors. These errors are then propagated through the whole reconstruction procedure, enabling to evaluate their effect on the final 3D reconstruction result, specifically on position uncertainties. Lastly, analysis of these error estimates enables to evaluate the quality of the 3D reconstruction, as illustrated by the shown experimental results.

  9. Fuzzy zoning for feature matching technique in 3D reconstruction of nasal endoscopic images.

    Rattanalappaiboon, Surapong; Bhongmakapat, Thongchai; Ritthipravat, Panrasee

    2015-12-01

    3D reconstruction from nasal endoscopic images greatly supports an otolaryngologist in examining nasal passages, mucosa, polyps, sinuses, and nasopharyx. In general, structure from motion is a popular technique. It consists of four main steps; (1) camera calibration, (2) feature extraction, (3) feature matching, and (4) 3D reconstruction. Scale Invariant Feature Transform (SIFT) algorithm is normally used for both feature extraction and feature matching. However, SIFT algorithm relatively consumes computational time particularly in the feature matching process because each feature in an image of interest is compared with all features in the subsequent image in order to find the best matched pair. A fuzzy zoning approach is developed for confining feature matching area. Matching between two corresponding features from different images can be efficiently performed. With this approach, it can greatly reduce the matching time. The proposed technique is tested with endoscopic images created from phantoms and compared with the original SIFT technique in terms of the matching time and average errors of the reconstructed models. Finally, original SIFT and the proposed fuzzy-based technique are applied to 3D model reconstruction of real nasal cavity based on images taken from a rigid nasal endoscope. The results showed that the fuzzy-based approach was significantly faster than traditional SIFT technique and provided similar quality of the 3D models. It could be used for creating a nasal cavity taken by a rigid nasal endoscope.

  10. Some Methods of Applied Numerical Analysis to 3d Facial Reconstruction Software

    Roşu, Şerban; Ianeş, Emilia; Roşu, Doina

    2010-09-01

    This paper deals with the collective work performed by medical doctors from the University Of Medicine and Pharmacy Timisoara and engineers from the Politechnical Institute Timisoara in the effort to create the first Romanian 3d reconstruction software based on CT or MRI scans and to test the created software in clinical practice.

  11. Xenobiotic metabolism in human skin and 3D human skin reconstructs: A review

    Gibbs, S.; Sandt, J.J.M. van de; Merk, H.F.; Lockley, D.J.; Pendlington, R.U.; Pease, C.K.

    2007-01-01

    In this review, we discuss and compare studies of xenobiotic metabolism in both human skin and 3D human skin reconstructs. In comparison to the liver, the skin is a less studied organ in terms of characterising metabolic capability. While the skin forms the major protective barrier to environmental

  12. List-mode MLEM Image Reconstruction from 3D ML Position Estimates.

    Caucci, Luca; Hunter, William C J; Furenlid, Lars R; Barrett, Harrison H

    2010-10-01

    Current thick detectors used in medical imaging allow recording many attributes, such as the 3D location of interaction within the scintillation crystal and the amount of energy deposited. An efficient way of dealing with these data is by storing them in list-mode (LM). To reconstruct the data, maximum-likelihood expectation-maximization (MLEM) is efficiently applied to the list-mode data, resulting in the list-mode maximum-likelihood expectation-maximization (LMMLEM) reconstruction algorithm.In this work, we consider a PET system consisting of two thick detectors facing each other. PMT outputs are collected for each coincidence event and are used to perform 3D maximum-likelihood (ML) position estimation of location of interaction. The mathematical properties of the ML estimation allow accurate modeling of the detector blur and provide a theoretical framework for the subsequent estimation step, namely the LMMLEM reconstruction. Indeed, a rigorous statistical model for the detector output can be obtained from calibration data and used in the calculation of the conditional probability density functions for the interaction location estimates.Our implementation of the 3D ML position estimation takes advantage of graphics processing unit (GPU) hardware and permits accurate real-time estimates of position of interaction. The LMMLEM algorithm is then applied to the list of position estimates, and the 3D radiotracer distribution is reconstructed on a voxel grid.

  13. VizieR Online Data Catalog: ADAM: 3D asteroid shape reconstruction code (Viikinkoski+, 2015)

    Viikinkoski, M.; Kaasalainen, M.; Durech, J.

    2015-02-01

    About the code: ADAM is a collection of routines for 3D asteroid shape reconstruction from disk-resolved observations. Any combination of lightcurves, adaptive optics images, HST/FGS data, range-Doppler radar images and disk-resolved thermal images may be used as data sources. The routines are implemented in a combination of MATLAB and C. (2 data files).

  14. Morphology and function of Bast's valve : additional insight in its functioning using 3D-reconstruction

    Hofman, R.; Segenhout, J. M.; Buytaert, J. A. N.; Dirckx, J. J. J.; Wit, H. P.

    2008-01-01

    The utriculo-endolymphatic valve was discovered by Bast in 1928. The function of Bast's valve is still unclear. By means of orthogonal-plane fluorescence optical sectioning (OPFOS) microscopy 3D-reconstructions of the valve and its surrounding region are depicted. The shape of the duct at the utricu

  15. Visualizing 3D velocity fields near contour surfaces. Revision 1

    Max, N.; Crawfis, R.; Grant, C.

    1994-08-08

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphics pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  16. Visualizing 3D velocity fields near contour surfaces

    Max, N.; Crawfis, R.; Grant, C.

    1994-03-01

    Vector field rendering is difficult in 3D because the vector icons overlap and hide each other. We propose four different techniques for visualizing vector fields only near surfaces. The first uses motion blurred particles in a thickened region around the surface. The second uses a voxel grid to contain integral curves of the vector field. The third uses many antialiased lines through the surface, and the fourth uses hairs sprouting from the surface and then bending in the direction of the vector field. All the methods use the graphite pipeline, allowing real time rotation and interaction, and the first two methods can animate the texture to move in the flow determined by the velocity field.

  17. 3D surface topology guides stem cell adhesion and differentiation.

    Viswanathan, Priyalakshmi; Ondeck, Matthew G; Chirasatitsin, Somyot; Ngamkham, Kamolchanok; Reilly, Gwendolen C; Engler, Adam J; Battaglia, Giuseppe

    2015-06-01

    Polymerized high internal phase emulsion (polyHIPE) foams are extremely versatile materials for investigating cell-substrate interactions in vitro. Foam morphologies can be controlled by polymerization conditions to result in either open or closed pore structures with different levels of connectivity, consequently enabling the comparison between 2D and 3D matrices using the same substrate with identical surface chemistry conditions. Additionally, here we achieve the control of pore surface topology (i.e. how different ligands are clustered together) using amphiphilic block copolymers as emulsion stabilizers. We demonstrate that adhesion of human mesenchymal progenitor (hES-MP) cells cultured on polyHIPE foams is dependent on foam surface topology and chemistry but is independent of porosity and interconnectivity. We also demonstrate that the interconnectivity, architecture and surface topology of the foams has an effect on the osteogenic differentiation potential of hES-MP cells. Together these data demonstrate that the adhesive heterogeneity of a 3D scaffold could regulate not only mesenchymal stem cell attachment but also cell behavior in the absence of soluble growth factors.

  18. Extreme 3D reconstruction of the final ROSETTA/PHILAE landing site

    Capanna, Claire; Jorda, Laurent; Lamy, Philippe; Gesquiere, Gilles; Delmas, Cédric; Durand, Joelle; Garmier, Romain; Gaudon, Philippe; Jurado, Eric

    2016-04-01

    The Philae lander aboard the Rosetta spacecraft successfully landed at the surface of comet 67P/Churyumov-Gerasimenko (hereafter 67P/C-G) after two rebounds on November 12, 2014. The final landing site, now known as « Abydos », has been identified on images acquired by the OSIRIS imaging system onboard the Rosetta orbiter[1]. The available images of Abydos are very limited in number and reveal a very extreme topography containing cliffs and overhangs. Furthermore, the surface is only observed under very high incidence angles of 60° on average, which implies that the images also exhibit lots of cast shadows. This makes it very difficult to reconstruct the 3D topography with standard methods such as photogrammetry or standard clinometry. We apply a new method called ''Multiresolution PhotoClinometry by Deformation'' (MPCD, [2]) to retrieve the 3D topography of the area around Abydos. The method works in two main steps: (i) a DTM of this region is extracted from a low resolution MPCD global shape model of comet 67P/C-G, and (ii) the resulting triangular mesh is progressively deformed at increasing spatial sampling down to 0.25 m in order to match a set of 14 images of Abydos with projected pixel scales between 1 and 8 m. The method used to perform the image matching is a quasi-Newton non-linear optimization method called L-BFGS-b[3] especially suited to large-scale problems. Finally, we also checked the compatibility of the final MPCD digital terrain model with a set of five panoramic images obtained by the CIVA-P instrument aboard Philae[4]. [1] Lamy et al., 2016, submitted. [2] Capanna et al., Three dimensional reconstruction using multiresoluton photoclinometry by deformation, The visual Computer, v. 29(6-8) pp. 825-835, 2013. [3] Morales et al., Remark on "Algorithm 778: L-BFGS-B: Fortran subroutines for large-scale bound constrained optimization", v.38(1) pp.1-4, ACM Trans. Math. Softw., 2011 [4] Bibring et al., 67P/Churyumov-Gerasimenko surface properties as

  19. Effective 3-D surface modeling for geographic information systems

    Yüksek, K.; Alparslan, M.; Mendi, E.

    2016-01-01

    In this work, we propose a dynamic, flexible and interactive urban digital terrain platform with spatial data and query processing capabilities of geographic information systems, multimedia database functionality and graphical modeling infrastructure. A new data element, called Geo-Node, which stores image, spatial data and 3-D CAD objects is developed using an efficient data structure. The system effectively handles data transfer of Geo-Nodes between main memory and secondary storage with an optimized directional replacement policy (DRP) based buffer management scheme. Polyhedron structures are used in digital surface modeling and smoothing process is performed by interpolation. The experimental results show that our framework achieves high performance and works effectively with urban scenes independent from the amount of spatial data and image size. The proposed platform may contribute to the development of various applications such as Web GIS systems based on 3-D graphics standards (e.g., X3-D and VRML) and services which integrate multi-dimensional spatial information and satellite/aerial imagery.

  20. Effective 3-D surface modeling for geographic information systems

    K. Yüksek

    2013-11-01

    Full Text Available In this work, we propose a dynamic, flexible and interactive urban digital terrain platform (DTP with spatial data and query processing capabilities of Geographic Information Systems (GIS, multimedia database functionality and graphical modeling infrastructure. A new data element, called Geo-Node, which stores image, spatial data and 3-D CAD objects is developed using an efficient data structure. The system effectively handles data transfer of Geo-Nodes between main memory and secondary storage with an optimized Directional Replacement Policy (DRP based buffer management scheme. Polyhedron structures are used in Digital Surface Modeling (DSM and smoothing process is performed by interpolation. The experimental results show that our framework achieves high performance and works effectively with urban scenes independent from the amount of spatial data and image size. The proposed platform may contribute to the development of various applications such as Web GIS systems based on 3-D graphics standards (e.g. X3-D and VRML and services which integrate multi-dimensional spatial information and satellite/aerial imagery.

  1. Weak lensing reconstructions in 2D & 3D: implications for cluster studies

    Leonard, Adrienne; Starck, Jean-Luc

    2015-01-01

    We compare the efficiency with which 2D and 3D weak lensing mass mapping techniques are able to detect clusters of galaxies using two state-of-the-art mass reconstruction techniques: MRLens in 2D and GLIMPSE in 3D. We simulate otherwise-empty cluster fields for 96 different virial mass-redshift combinations spanning the ranges $3\\times10^{13}h^{-1}M_\\odot \\le M_{vir}\\le 10^{15}h^{-1}M_\\odot$ and $0.05 \\le z_{\\rm cl} \\le 0.75$, and for each generate 1000 realisations of noisy shear data in 2D and 3D. For each field, we then compute the cluster (false) detection rate as the mean number of cluster (false) detections per reconstruction over the sample of 1000 reconstructions. We show that both MRLens and GLIMPSE are effective tools for the detection of clusters from weak lensing measurements, and provide comparable quality reconstructions at low redshift. At high redshift, GLIMPSE reconstructions offer increased sensitivity in the detection of clusters, yielding cluster detection rates up to a factor of $\\sim 10\\...

  2. Internet2-based 3D PET image reconstruction using a PC cluster.

    Shattuck, D W; Rapela, J; Asma, E; Chatzioannou, A; Qi, J; Leahy, R M

    2002-08-07

    We describe an approach to fast iterative reconstruction from fully three-dimensional (3D) PET data using a network of PentiumIII PCs configured as a Beowulf cluster. To facilitate the use of this system, we have developed a browser-based interface using Java. The system compresses PET data on the user's machine, sends these data over a network, and instructs the PC cluster to reconstruct the image. The cluster implements a parallelized version of our preconditioned conjugate gradient method for fully 3D MAP image reconstruction. We report on the speed-up factors using the Beowulf approach and the impacts of communication latencies in the local cluster network and the network connection between the user's machine and our PC cluster.

  3. A 3D photogrammetric reconstruction attempt of specimens of Badenian echinoids

    Polonkai, Bálint; Raveloson, Andrea; Görög, Ágnes; Bodor, Emese; Székely, Balázs

    2016-04-01

    The rich echinoid fauna of the Badenian (Middle Miocene) from Budapest (Hungary) is well known for more than one hundred years. Along the road cuts and due to the construction of large buildings from 1960 to 2011, new Badenian outcrops with rich and well preserved echinoids were found in the city. Thus the main aim of this study was to revise historically collected echinoids (in the collection of Geological and Geophysical Institute of Hungary) from different parts of the city (Örs Vezér Square, Gyakorló Street, Rákos and District of Budafok-Tétény) and to classify the newly collected fossils, moreover to carry out the palaeoenvironmental reconstruction of the different localities. The specimens studied are from the Upper Badenian Leithakalk Formation Rákos Member, which consists of sandy limestone, calcareous loose sandstone with volcanic clast and/or calcarenite without terrigenous or volcanic clast. One of the most common echinoidea in the Badenian, the Parascutella gibbercula DE SERRES, 1829 is well known and researched in both morphological and taxonomic aspects. However there are some intraspecific morphological features that show sharp differences across the specimens: the adapical conical convexity is considerably different between several forms. The petalodium's length/width ratio is also different between many specimens. Other morphological characters for example peristomal and periproctal aperture and the food groove can also be different. These differences within this relatively small area could be determined by ecological conditions (such as substrate, palaeodepth), or can be related to taxonomical or pathological changes. For an appropriate comparison, quantification of these features is necessary. Photogrammetry is in general a useful and well-developed tool to reconstruct 3D surfaces of artefacts (e.g., in archaeology, cultural heritage, and also in palaeontology). In order to evaluate the differences found in P. gibbercula specimens various

  4. A 3D approach to reconstruct continuous optical images using lidar and MODIS

    HuaGuo; Huang; Jun; Lian

    2015-01-01

    Background: Monitoring forest health and biomass for changes over time in the global environment requires the provision of continuous satellite images. However, optical images of land surfaces are generally contaminated when clouds are present or rain occurs.Methods: To estimate the actual reflectance of land surfaces masked by clouds and potential rain, 3D simulations by the RAPID radiative transfer model were proposed and conducted on a forest farm dominated by birch and larch in Genhe City, Da Xing’An Ling Mountain in Inner Mongolia, China. The canopy height model(CHM) from lidar data were used to extract individual tree structures(location, height, crown width). Field measurements related tree height to diameter of breast height(DBH), lowest branch height and leaf area index(LAI). Series of Landsat images were used to classify tree species and land cover. MODIS LAI products were used to estimate the LAI of individual trees. Combining all these input variables to drive RAPID, high-resolution optical remote sensing images were simulated and validated with available satellite images.Results: Evaluations on spatial texture, spectral values and directional reflectance were conducted to show comparable results.Conclusions: The study provides a proof-of-concept approach to link lidar and MODIS data in the parameterization of RAPID models for high temporal and spatial resolutions of image reconstruction in forest dominated areas.

  5. A 3D approach to reconstruct continuous optical images using lidar and MODIS

    HuaGuo Huang

    2015-06-01

    Full Text Available Background Monitoring forest health and biomass for changes over time in the global environment requires the provision of continuous satellite images. However, optical images of land surfaces are generally contaminated when clouds are present or rain occurs. Methods To estimate the actual reflectance of land surfaces masked by clouds and potential rain, 3D simulations by the RAPID radiative transfer model were proposed and conducted on a forest farm dominated by birch and larch in Genhe City, DaXing’AnLing Mountain in Inner Mongolia, China. The canopy height model (CHM from lidar data were used to extract individual tree structures (location, height, crown width. Field measurements related tree height to diameter of breast height (DBH, lowest branch height and leaf area index (LAI. Series of Landsat images were used to classify tree species and land cover. MODIS LAI products were used to estimate the LAI of individual trees. Combining all these input variables to drive RAPID, high-resolution optical remote sensing images were simulated and validated with available satellite images. Results Evaluations on spatial texture, spectral values and directional reflectance were conducted to show comparable results. Conclusions The study provides a proof-of-concept approach to link lidar and MODIS data in the parameterization of RAPID models for high temporal and spatial resolutions of image reconstruction in forest dominated areas.

  6. 2D-3D shape reconstruction of the distal femur from stereo X-Ray imaging using statistical shape models

    Baka, N.; Kaptein, B. L.; de Bruijne, Marleen;

    2011-01-01

    as it lowers both the acquisition costs and the radiation dose compared to CT. We propose a method for pose estimation and shape reconstruction of 3D bone surfaces from two (or more) calibrated X-ray images using a statistical shape model (SSM). User interaction is limited to manual initialization of the mean...... shape. The proposed method combines a 3D distance based objective function with automatic edge selection on a Canny edge map. Landmark-edge correspondences are weighted based on the orientation difference of the projected silhouette and the corresponding image edge. The method was evaluated by rigid...... pose estimation of ground truth shapes as well as 3D shape estimation using a SSM of the whole femur, from stereo cadaver X-rays, in vivo biplane fluoroscopy image-pairs, and an in vivo biplane fluoroscopic sequence. Ground truth shapes for all experiments were available in the form of CT segmentations...

  7. 3D Imaging of Dielectric Objects Buried under a Rough Surface by Using CSI

    Evrim Tetik

    2015-01-01

    Full Text Available A 3D scalar electromagnetic imaging of dielectric objects buried under a rough surface is presented. The problem has been treated as a 3D scalar problem for computational simplicity as a first step to the 3D vector problem. The complexity of the background in which the object is buried is simplified by obtaining Green’s function of its background, which consists of two homogeneous half-spaces, and a rough interface between them, by using Buried Object Approach (BOA. Green’s function of the two-part space with planar interface is obtained to be used in the process. Reconstruction of the location, shape, and constitutive parameters of the objects is achieved by Contrast Source Inversion (CSI method with conjugate gradient. The scattered field data that is used in the inverse problem is obtained via both Method of Moments (MoM and Comsol Multiphysics pressure acoustics model.

  8. Variation in the measurement of cranial volume and surface area using 3D laser scanning technology.

    Sholts, Sabrina B; Wärmländer, Sebastian K T S; Flores, Louise M; Miller, Kevin W P; Walker, Phillip L

    2010-07-01

    Three-dimensional (3D) laser scanner models of human crania can be used for forensic facial reconstruction, and for obtaining craniometric data useful for estimating age, sex, and population affinity of unidentified human remains. However, the use of computer-generated measurements in a casework setting requires the measurement precision to be known. Here, we assess the repeatability and precision of cranial volume and surface area measurements using 3D laser scanner models created by different operators using different protocols for collecting and processing data. We report intraobserver measurement errors of 0.2% and interobserver errors of 2% of the total area and volume values, suggesting that observer-related errors do not pose major obstacles for sharing, combining, or comparing such measurements. Nevertheless, as no standardized procedure exists for area or volume measurements from 3D models, it is imperative to report the scanning and postscanning protocols employed when such measurements are conducted in a forensic setting.

  9. Conveying the 3D Shape of Transparent Surfaces Via Texture

    Interrante, Victoria; Fuchs, Henry; Pizer, Stephen

    1997-01-01

    Transparency can be a useful device for depicting multiple overlapping surfaces in a single image. The challenge is to render the transparent surfaces in such a way that their three-dimensional shape can be readily understood and their depth distance from underlying structures clearly perceived. This paper describes our investigations into the use of sparsely-distributed discrete, opaque texture as an 'artistic device' for more explicitly indicating the relative depth of a transparent surface and for communicating the essential features of its 3D shape in an intuitively meaningful and minimally occluding way. The driving application for this work is the visualization of layered surfaces in radiation therapy treatment planning data, and the technique is illustrated on transparent isointensity surfaces of radiation dose. We describe the perceptual motivation and artistic inspiration for defining a stroke texture that is locally oriented in the direction of greatest normal curvature (and in which individual strokes are of a length proportional to the magnitude of the curvature in the direction they indicate), and discuss several alternative methods for applying this texture to isointensity surfaces defined in a volume. We propose an experimental paradigm for objectively measuring observers' ability to judge the shape and depth of a layered transparent surface, in the course of a task relevant to the needs of radiotherapy treatment planning, and use this paradigm to evaluate the practical effectiveness of our approach through a controlled observer experiment based on images generated from actual clinical data.

  10. Real-Time Large Scale 3d Reconstruction by Fusing Kinect and Imu Data

    Huai, J.; Zhang, Y.; Yilmaz, A.

    2015-08-01

    Kinect-style RGB-D cameras have been used to build large scale dense 3D maps for indoor environments. These maps can serve many purposes such as robot navigation, and augmented reality. However, to generate dense 3D maps of large scale environments is still very challenging. In this paper, we present a mapping system for 3D reconstruction that fuses measurements from a Kinect and an inertial measurement unit (IMU) to estimate motion. Our major achievements include: (i) Large scale consistent 3D reconstruction is realized by volume shifting and loop closure; (ii) The coarse-to-fine iterative closest point (ICP) algorithm, the SIFT odometry, and IMU odometry are combined to robustly and precisely estimate pose. In particular, ICP runs routinely to track the Kinect motion. If ICP fails in planar areas, the SIFT odometry provides incremental motion estimate. If both ICP and the SIFT odometry fail, e.g., upon abrupt motion or inadequate features, the incremental motion is estimated by the IMU. Additionally, the IMU also observes the roll and pitch angles which can reduce long-term drift of the sensor assembly. In experiments on a consumer laptop, our system estimates motion at 8Hz on average while integrating color images to the local map and saving volumes of meshes concurrently. Moreover, it is immune to tracking failures, and has smaller drift than the state-of-the-art systems in large scale reconstruction.

  11. External force back-projective composition and globally deformable optimization for 3-D coronary artery reconstruction.

    Yang, Jian; Cong, Weijian; Chen, Yang; Fan, Jingfan; Liu, Yue; Wang, Yongtian

    2014-02-21

    The clinical value of the 3D reconstruction of a coronary artery is important for the diagnosis and intervention of cardiovascular diseases. This work proposes a method based on a deformable model for reconstructing coronary arteries from two monoplane angiographic images acquired from different angles. First, an external force back-projective composition model is developed to determine the external force, for which the force distributions in different views are back-projected to the 3D space and composited in the same coordinate system based on the perspective projection principle of x-ray imaging. The elasticity and bending forces are composited as an internal force to maintain the smoothness of the deformable curve. Second, the deformable curve evolves rapidly toward the true vascular centerlines in 3D space and angiographic images under the combination of internal and external forces. Third, densely matched correspondence among vessel centerlines is constructed using a curve alignment method. The bundle adjustment method is then utilized for the global optimization of the projection parameters and the 3D structures. The proposed method is validated on phantom data and routine angiographic images with consideration for space and re-projection image errors. Experimental results demonstrate the effectiveness and robustness of the proposed method for the reconstruction of coronary arteries from two monoplane angiographic images. The proposed method can achieve a mean space error of 0.564 mm and a mean re-projection error of 0.349 mm.

  12. 3D Maize Plant Reconstruction Based on Georeferenced Overlapping LiDAR Point Clouds

    Miguel Garrido

    2015-12-01

    Full Text Available 3D crop reconstruction with a high temporal resolution and by the use of non-destructive measuring technologies can support the automation of plant phenotyping processes. Thereby, the availability of such 3D data can give valuable information about the plant development and the interaction of the plant genotype with the environment. This article presents a new methodology for georeferenced 3D reconstruction of maize plant structure. For this purpose a total station, an IMU, and several 2D LiDARs with different orientations were mounted on an autonomous vehicle. By the multistep methodology presented, based on the application of the ICP algorithm for point cloud fusion, it was possible to perform the georeferenced point clouds overlapping. The overlapping point cloud algorithm showed that the aerial points (corresponding mainly to plant parts were reduced to 1.5%–9% of the total registered data. The remaining were redundant or ground points. Through the inclusion of different LiDAR point of views of the scene, a more realistic representation of the surrounding is obtained by the incorporation of new useful information but also of noise. The use of georeferenced 3D maize plant reconstruction at different growth stages, combined with the total station accuracy could be highly useful when performing precision agriculture at the crop plant level.

  13. 3D Additive Construction with Regolith for Surface Systems

    Mueller, Robert P.

    2014-01-01

    Planetary surface exploration on Asteroids, the Moon, Mars and Martian Moons will require the stabilization of loose, fine, dusty regolith to avoid the effects of vertical lander rocket plume impingement, to keep abrasive and harmful dust from getting lofted and for dust free operations. In addition, the same regolith stabilization process can be used for 3 Dimensional ( 3D) printing, additive construction techniques by repeating the 2D stabilization in many vertical layers. This will allow in-situ construction with regolith so that materials will not have to be transported from Earth. Recent work in the NASA Kennedy Space Center (KSC) Surface Systems Office (NE-S) Swamp Works and at the University of Southern California (USC) under two NASA Innovative Advanced Concept (NIAC) awards have shown promising results with regolith (crushed basalt rock) materials for in-situ heat shields, bricks, landing/launch pads, berms, roads, and other structures that could be fabricated using regolith that is sintered or mixed with a polymer binder. The technical goals and objectives of this project are to prove the feasibility of 3D printing additive construction using planetary regolith simulants and to show that they have structural integrity and practical applications in space exploration.

  14. Applicability of 3D-CT facial reconstruction for forensic individual identification.

    Rocha, Sara dos Santos; Ramos, Dalton Luiz; Cavalcanti, Marcelo de Gusmão Paraíso

    2003-01-01

    Computed tomography (CT) is used in several clinical dentistry applications even by axial slices and two and three-dimensional reconstructed images (2D-CT and 3D-CT). The purpose of the current study is to assess the precision of linear measurements made in 3D-CT using craniometric patterns for individual identification in Forensic Dentistry. Five cadaver heads were submitted to a spiral computed tomography using axial slices, and 3D-CT reconstructions were obtained by volume rendering technique with computer graphics tools. Ten (10) craniometric measurements were determined in 3D-CT images by two examiners independently, twice each, and the standard error of intra- and inter-examiner measurements was assessed. The results demonstrated a low standard error of those measurements, from 0.85% to 3.09%. In conclusion, the linear measurements obtained in osseous and soft tissue structures were considered to be precise in 3D-CT with high imaging quality and resolution.

  15. Applicability of 3D-CT facial reconstruction for forensic individual identification

    Rocha, Sara dos Santos [Sao Paulo Univ., SP (Brazil). Odontologia Forense; Ramos, Dalton Luiz de Paula [Sao Paulo Univ., SP (Brazil). Dept. of Odontologia Social; Cavalcanti, Marcelo de Gusmao Paraiso [Sao Paulo Univ., SP (Brazil). Dept. de Radiologia

    2003-03-01

    Computed tomography (CT) is used in several clinical dentistry applications even by axial slices and two and three-dimensional reconstructed images (2D-CT and 3D-CT). The purpose of the current study is to assess the precision of linear measurements made in 3D-CT using cranio metric patterns for individual identification in Forensic Dentistry. Five cadaver heads were submitted to a spiral computed tomography using axial slices, and 3D-CT reconstructions were obtained by volume rendering technique with computer graphics tools. Ten (10) cranio metric measurements were determined in 3D-CT images by two examiners independently, twice each, and the standard error of intra- and inter-examiner measurements was assessed. The results demonstrated a low standard error of those measurements, from 0.85% to 3.09%. In conclusion, the linear measurements obtained in osseous and soft tissue structures were considered to be precise in 3D-CT with high imaging quality and resolution. (author)

  16. 3D-Printing Technologies for Craniofacial Rehabilitation, Reconstruction, and Regeneration.

    Nyberg, Ethan L; Farris, Ashley L; Hung, Ben P; Dias, Miguel; Garcia, Juan R; Dorafshar, Amir H; Grayson, Warren L

    2017-01-01

    The treatment of craniofacial defects can present many challenges due to the variety of tissue-specific requirements and the complexity of anatomical structures in that region. 3D-printing technologies provide clinicians, engineers and scientists with the ability to create patient-specific solutions for craniofacial defects. Currently, there are three key strategies that utilize these technologies to restore both appearance and function to patients: rehabilitation, reconstruction and regeneration. In rehabilitation, 3D-printing can be used to create prostheses to replace or cover damaged tissues. Reconstruction, through plastic surgery, can also leverage 3D-printing technologies to create custom cutting guides, fixation devices, practice models and implanted medical devices to improve patient outcomes. Regeneration of tissue attempts to replace defects with biological materials. 3D-printing can be used to create either scaffolds or living, cellular constructs to signal tissue-forming cells to regenerate defect regions. By integrating these three approaches, 3D-printing technologies afford the opportunity to develop personalized treatment plans and design-driven manufacturing solutions to improve aesthetic and functional outcomes for patients with craniofacial defects.

  17. 3D weighting in cone beam image reconstruction algorithms: ray-driven vs. pixel-driven.

    Tang, Xiangyang; Nilsen, Roy A; Smolin, Alex; Lifland, Ilya; Samsonov, Dmitry; Taha, Basel

    2008-01-01

    A 3D weighting scheme have been proposed previously to reconstruct images at both helical and axial scans in stat-of-the-art volumetric CT scanners for diagnostic imaging. Such a 3D weighting can be implemented in the manner of either ray-driven or pixel-drive, depending on the available computation resources. An experimental study is conducted in this paper to evaluate the difference between the ray-driven and pixel-driven implementations of the 3D weighting from the perspective of image quality, while their computational complexity is analyzed theoretically. Computer simulated data and several phantoms, such as the helical body phantom and humanoid chest phantom, are employed in the experimental study, showing that both the ray-driven and pixel-driven 3D weighting provides superior image quality for diagnostic imaging in clinical applications. With the availability of image reconstruction engine at increasing computational power, it is believed that the pixel-driven 3D weighting will be dominantly employed in state-of-the-art volumetric CT scanners over clinical applications.

  18. Reconstruction of 3-D cloud geometry using a scanning cloud radar

    Ewald, F.; Winkler, C.; Zinner, T.

    2014-11-01

    Clouds are one of the main reasons of uncertainties in the forecasts of weather and climate. In part, this is due to limitations of remote sensing of cloud microphysics. Present approaches often use passive spectral measurements for the remote sensing of cloud microphysical parameters. Large uncertainties are introduced by three dimensional (3-D) radiative transfer effects and cloud inhomogeneities. Such effects are largely caused by unknown orientation of cloud sides or by shadowed areas on the cloud. Passive ground based remote sensing of cloud properties at high spatial resolution could be improved crucially with this kind of additional knowledge of cloud geometry. To this end, a method for the accurate reconstruction of 3-D cloud geometry from cloud radar measurements is developed in this work. Using a radar simulator and simulated passive measurements of static LES model clouds, the effects of different radar scan resolutions and varying interpolation methods are evaluated. In reality a trade-off between scan resolution and scan duration has to be found as clouds are changing quickly. A reasonable choice is a scan resolution of 1 to 2°. The most suitable interpolation procedure identified is the barycentric interpolation method. The 3-D reconstruction method is demonstrated using radar scans of convective cloud cases with the Munich miraMACS, a 35 GHz scanning cloud radar. As a successful proof of concept, camera imagery collected at the radar location is reproduced for the observed cloud cases via 3-D volume reconstruction and 3-D radiative transfer simulation. Data sets provided by the presented reconstruction method will aid passive spectral ground-based measurements of cloud sides to retrieve microphysical parameters.

  19. 3D stochastic geophysical inversion for contact surface geometry

    Lelièvre, Peter; Farquharson, Colin; Bijani, Rodrigo

    2015-04-01

    Geologists' interpretations about the Earth typically involve distinct rock units with contacts (interfaces) between them. As such, 3D geological Earth models typically comprise wireframe contact surfaces of tessellated triangles or other polygonal planar facets. In contrast, standard minimum-structure geophysical inversions are performed on meshes of space-filling cells (typically prisms or tetrahedra) and recover smoothly varying physical property distributions that are inconsistent with typical geological interpretations. There are several approaches through which mesh-based geophysical inversion can help recover models with some of the desired characteristics. However, a more effective strategy is to consider a fundamentally different type of inversion that works directly with models that comprise surfaces representing contacts between rock units. We are researching such an approach, our goal being to perform geophysical forward and inverse modelling directly with 3D geological models of any complexity. Geological and geophysical models should be specified using the same parameterization such that they are, in essence, the same Earth model. We parameterize the wireframe contact surfaces in a 3D model as the coordinates of the nodes (facet vertices). The physical properties of each rock unit in a model remain fixed while the geophysical inversion controls the position of the contact surfaces via the control nodes, perturbing the surfaces as required to fit the geophysical data responses. This is essentially a "geometry inversion", which can be used to recover the unknown geometry of a target body or to investigate the viability of a proposed Earth model. We apply global optimization strategies to solve the inverse problem, including stochastic sampling to obtain statistical information regarding the likelihood of particular features in the model, helping to assess the viability of a proposed model. Jointly inverting multiple types of geophysical data is simple

  20. Intuitive Terrain Reconstruction Using Height Observation-Based Ground Segmentation and 3D Object Boundary Estimation

    Sungdae Sim

    2012-12-01

    Full Text Available Mobile robot operators must make rapid decisions based on information about the robot’s surrounding environment. This means that terrain modeling and photorealistic visualization are required for the remote operation of mobile robots. We have produced a voxel map and textured mesh from the 2D and 3D datasets collected by a robot’s array of sensors, but some upper parts of objects are beyond the sensors’ measurements and these parts are missing in the terrain reconstruction result. This result is an incomplete terrain model. To solve this problem, we present a new ground segmentation method to detect non-ground data in the reconstructed voxel map. Our method uses height histograms to estimate the ground height range, and a Gibbs-Markov random field model to refine the segmentation results. To reconstruct a complete terrain model of the 3D environment, we develop a 3D boundary estimation method for non-ground objects. We apply a boundary detection technique to the 2D image, before estimating and refining the actual height values of the non-ground vertices in the reconstructed textured mesh. Our proposed methods were tested in an outdoor environment in which trees and buildings were not completely sensed. Our results show that the time required for ground segmentation is faster than that for data sensing, which is necessary for a real-time approach. In addition, those parts of objects that were not sensed are accurately recovered to retrieve their real-world appearances.

  1. Intuitive terrain reconstruction using height observation-based ground segmentation and 3D object boundary estimation.

    Song, Wei; Cho, Kyungeun; Um, Kyhyun; Won, Chee Sun; Sim, Sungdae

    2012-12-12

    Mobile robot operators must make rapid decisions based on information about the robot's surrounding environment. This means that terrain modeling and photorealistic visualization are required for the remote operation of mobile robots. We have produced a voxel map and textured mesh from the 2D and 3D datasets collected by a robot's array of sensors, but some upper parts of objects are beyond the sensors' measurements and these parts are missing in the terrain reconstruction result. This result is an incomplete terrain model. To solve this problem, we present a new ground segmentation method to detect non-ground data in the reconstructed voxel map. Our method uses height histograms to estimate the ground height range, and a Gibbs-Markov random field model to refine the segmentation results. To reconstruct a complete terrain model of the 3D environment, we develop a 3D boundary estimation method for non-ground objects. We apply a boundary detection technique to the 2D image, before estimating and refining the actual height values of the non-ground vertices in the reconstructed textured mesh. Our proposed methods were tested in an outdoor environment in which trees and buildings were not completely sensed. Our results show that the time required for ground segmentation is faster than that for data sensing, which is necessary for a real-time approach. In addition, those parts of objects that were not sensed are accurately recovered to retrieve their real-world appearances.

  2. The Transformations of the Central Area of Nora: the 3D Reconstruction of the Central Baths

    Daniele Capuzzo

    2013-11-01

    Full Text Available The 3D reconstruction of the Central Baths of Nora has required a long and reasoned analysis. On the basis of precise comparisons, a planimetric study of the complex has been first carried out, followed by the more difficult one of the elevations and the roofs, in order to create a model that allows to appreciate the building not only in its structural complexity, but also in the relationship with the spatial context in which it stood. This work represents only a part of a larger project that lead to the creation of a 3D model of the whole central district of Nora.

  3. A Method for 3D Histopathology Reconstruction Supporting Mouse Microvasculature Analysis.

    Yiwen Xu

    Full Text Available Structural abnormalities of the microvasculature can impair perfusion and function. Conventional histology provides good spatial resolution with which to evaluate the microvascular structure but affords no 3-dimensional information; this limitation could lead to misinterpretations of the complex microvessel network in health and disease. The objective of this study was to develop and evaluate an accurate, fully automated 3D histology reconstruction method to visualize the arterioles and venules within the mouse hind-limb. Sections of the tibialis anterior muscle from C57BL/J6 mice (both normal and subjected to femoral artery excision were reconstructed using pairwise rigid and affine registrations of 5 µm-thick, paraffin-embedded serial sections digitized at 0.25 µm/pixel. Low-resolution intensity-based rigid registration was used to initialize the nucleus landmark-based registration, and conventional high-resolution intensity-based registration method. The affine nucleus landmark-based registration was developed in this work and was compared to the conventional affine high-resolution intensity-based registration method. Target registration errors were measured between adjacent tissue sections (pairwise error, as well as with respect to a 3D reference reconstruction (accumulated error, to capture propagation of error through the stack of sections. Accumulated error measures were lower (p < 0.01 for the nucleus landmark technique and superior vasculature continuity was observed. These findings indicate that registration based on automatic extraction and correspondence of small, homologous landmarks may support accurate 3D histology reconstruction. This technique avoids the otherwise problematic "banana-into-cylinder" effect observed using conventional methods that optimize the pairwise alignment of salient structures, forcing them to be section-orthogonal. This approach will provide a valuable tool for high-accuracy 3D histology tissue

  4. Quantification of gully volume using very high resolution DSM generated through 3D reconstruction from airborne and field digital imagery

    Castillo, Carlos; Zarco-Tejada, Pablo; Laredo, Mario; Gómez, Jose Alfonso

    2013-04-01

    Major advances have been made recently in automatic 3D photo-reconstruction techniques using uncalibrated and non-metric cameras (James and Robson, 2012). However, its application on soil conservation studies and landscape feature identification is currently at the outset. The aim of this work is to compare the performance of a remote sensing technique using a digital camera mounted on an airborne platform, with 3D photo-reconstruction, a method already validated for gully erosion assessment purposes (Castillo et al., 2012). A field survey was conducted in November 2012 in a 250 m-long gully located in field crops on a Vertisol in Cordoba (Spain). The airborne campaign was conducted with a 4000x3000 digital camera installed onboard an aircraft flying at 300 m above ground level to acquire 6 cm resolution imagery. A total of 990 images were acquired over the area ensuring a large overlap in the across- and along-track direction of the aircraft. An ortho-mosaic and the digital surface model (DSM) were obtained through automatic aerial triangulation and camera calibration methods. For the field-level photo-reconstruction technique, the gully was divided in several reaches to allow appropriate reconstruction (about 150 pictures taken per reach) and, finally, the resulting point clouds were merged into a unique mesh. A centimetric-accuracy GPS provided a benchmark dataset for gully perimeter and distinguishable reference points in order to allow the assessment of measurement errors of the airborne technique and the georeferenciation of the photo-reconstruction 3D model. The uncertainty on the gully limits definition was explicitly addressed by comparison of several criteria obtained by 3D models (slope and second derivative) with the outer perimeter obtained by the GPS operator identifying visually the change in slope at the top of the gully walls. In this study we discussed the magnitude of planimetric and altimetric errors and the differences observed between the

  5. Fast 3D spine reconstruction of postoperative patients using a multilevel statistical model.

    Lecron, Fabian; Boisvert, Jonathan; Mahmoudi, Saïd; Labelle, Hubert; Benjelloun, Mohammed

    2012-01-01

    Severe cases of spinal deformities such as scoliosis are usually treated by a surgery where instrumentation (hooks, screws and rods) is installed to the spine to correct deformities. Even if the purpose is to obtain a normal spine curve, the result is often straighter than normal. In this paper, we propose a fast statistical reconstruction algorithm based on a general model which can deal with such instrumented spines. To this end, we present the concept of multilevel statistical model where the data are decomposed into a within-group and a between-group component. The reconstruction procedure is formulated as a second-order cone program which can be solved very fast (few tenths of a second). Reconstruction errors were evaluated on real patient data and results showed that multilevel modeling allows better 3D reconstruction than classical models.

  6. Peripheral pulmonary arteries: identification at multi-slice spiral CT with 3D reconstruction

    Coche, Emmanuel; Pawlak, Sebastien; Dechambre, Stephane; Maldague, Baudouin [Department of Radiology, St. Luc Hospital, UCL, Avenue Hippocrate, 10, 1200 Brussels (Belgium)

    2003-04-01

    Our objective was to analyze the peripheral pulmonary arteries using thin-collimation multi-slice spiral CT. Twenty consecutive patients underwent enhanced-spiral multi-slice CT using 1-mm collimation. Two observers analyzed the pulmonary arteries by consensus on a workstation. Each artery was identified on axial and 3D shaded-surface display reconstruction images. Each subsegmental artery was measured at a mediastinal window setting and compared with anatomical classifications. The location and branching of every subsegmental artery was recorded. The number of well-visualized sub-subsegmental arteries at a mediastinal window setting was compared with those visualized at a lung window setting. Of 800 subsegmental arteries, 769 (96%) were correctly visualized and 123 accessory subsegmental arteries were identified using the mediastinal window setting. One thousand ninety-two of 2019 sub-subsegmental arteries (54%) identified using the lung window setting were correctly visualized using the mediastinal window setting. Enhanced multi-slice spiral CT with thin collimation can be used to analyze precisely the subsegmental pulmonary arteries and may identify even more distal pulmonary arteries. (orig.)

  7. Peripheral pulmonary arteries: identification at multi-slice spiral CT with 3D reconstruction.

    Coche, Emmanuel; Pawlak, Sebastien; Dechambre, Stéphane; Maldague, Baudouin

    2003-04-01

    Our objective was to analyze the peripheral pulmonary arteries using thin-collimation multi-slice spiral CT. Twenty consecutive patients underwent enhanced-spiral multi-slice CT using 1-mm collimation. Two observers analyzed the pulmonary arteries by consensus on a workstation. Each artery was identified on axial and 3D shaded-surface display reconstruction images. Each subsegmental artery was measured at a mediastinal window setting and compared with anatomical classifications. The location and branching of every subsegmental artery was recorded. The number of well-visualized sub-subsegmental arteries at a mediastinal window setting was compared with those visualized at a lung window setting. Of 800 subsegmental arteries, 769 (96%) were correctly visualized and 123 accessory subsegmental arteries were identified using the mediastinal window setting. One thousand ninety-two of 2019 sub-subsegmental arteries (54%) identified using the lung window setting were correctly visualized using the mediastinal window setting. Enhanced multi-slice spiral CT with thin collimation can be used to analyze precisely the subsegmental pulmonary arteries and may identify even more distal pulmonary arteries.

  8. 3D Surface Configuration Modulated 2D Symmetry Detection

    Lok-Teng Sio

    2011-05-01

    Full Text Available To perceive a symmetric pattern, an observer needs to find correspondence between two image elements across the symmetric axis, implying an excitatory relationship between perceptual mechanisms responding to these elements. To perceive a 3D structure in a random dot stereogram (RDS, the perceptual mechanisms tuned to different disparities would inhibit each other. We investigated whether putting corresponding elements of a symmetric pattern in different depths would affect symmetry detection. The symmetry patterns consisted of dots (0.19degx0.19deg occupying .5% of the display. We measured the coherence threshold for detecting symmetric patterns rendered on 14 possible 3D structures that were produced by an RDS. The coherence threshold for symmetric patterns on a slant surface was similar to that on a frontoparallel plane even though in the former the depths of the two sides of the symmetric axis were different. The threshold increased dramatically when one side of the axis inclined toward the observer while the other side inclined away though the depth difference between the two sides was the same as that in the slant condition. The threshold reduced on a hinge configuration whose joint coincide with the symmetry axis. Our result suggests that co-planarity is a decisive factor for symmetry detection.

  9. CAVAREV-an open platform for evaluating 3D and 4D cardiac vasculature reconstruction

    Rohkohl, Christopher; Hornegger, Joachim [Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander University Erlangen-Nuremberg, Martensstr. 3, 91058 Erlangen (Germany); Lauritsch, Guenter [Siemens AG, Healthcare Sector, Siemensstr. 1, 91301 Forchheim (Germany); Keil, Andreas, E-mail: christopher.rohkohl@informatik.uni-erlangen.d, E-mail: guenter.lauritsch@siemens.co, E-mail: andreas.keil@cs.tum.ed, E-mail: joachim.hornegger@informatik.uni-erlangen.d [Computer Aided Medical Procedures and Augmented Reality, TU Muenchen, Boltzmannstr. 3, 85748 Garching (Germany)

    2010-05-21

    The 3D reconstruction of cardiac vasculature, e.g. the coronary arteries, using C-arm CT (rotational angiography) is an active and challenging field of research. There are numerous publications on different reconstruction techniques. However, there is still a lack of comparability of achieved results for several reasons: foremost, datasets used in publications are not open to public and thus experiments are not reproducible by other researchers. Further, the results highly depend on the vasculature motion, i.e. cardiac and breathing motion patterns which are also not comparable across publications. We aim to close this gap by providing an open platform, called Cavarev (CArdiac VAsculature Reconstruction EValuation). It features two simulated dynamic projection datasets based on the 4D XCAT phantom with contrasted coronary arteries which was derived from patient data. In the first dataset, the vasculature undergoes a continuous periodic motion. The second dataset contains aperiodic heart motion by including additional breathing motion. The geometry calibration and acquisition protocol were obtained from a real-world C-arm system. For qualitative evaluation of the reconstruction results, the correlation of the morphology is used. Two segmentation-based quality measures are introduced which allow us to assess the 3D and 4D reconstruction quality. They are based on the spatial overlap of the vasculature reconstruction with the ground truth. The measures enable a comprehensive analysis and comparison of reconstruction results independent from the utilized reconstruction algorithm. An online platform (www.cavarev.com) is provided where the datasets can be downloaded, researchers can manage and publish algorithm results and download a reference C++ and Matlab implementation.

  10. Improved 3D reconstruction in smart-room environments using ToF imaging

    Guðmundsson, Sigurjón Árni; Pardas, Montse; Casas, Josep R.;

    2010-01-01

    This paper presents the use of Time-of-Flight (ToF) cameras in smart-rooms and how this leads to improved results in segmenting the people in the room from the background and consequently better 3D reconstruction of foreground objects. A calibrated rig consisting of one Swissranger SR3100 Time......-of-Flight range camera and a high resolution standard CCD camera is set in a smart-room containing five other standard cameras. A probabilistic background model is used to segment each view and a shape from silhouette volume is reconstructed. It is shown that the presence of the range camera gives ways...

  11. 3D RECONSTRUCTION AND ANALYSIS OF THE FRAGMENTED GRAINS IN A COMPOSITE MATERIAL

    Luc Gillibert

    2013-06-01

    Full Text Available X-ray microtomography from solid propellant allows studying the microstructure of fragmented grains in damaged samples. A new reconstruction algorithm of fragmented grains for 3D images is introduced. Based on a watershed transform of a morphological closing of the input image, the algorithm can be used  with different sets of markers. Two of them are compared. After the grain reconstruction, a multiscale segmentation  algorithm is used to extract each fragment of the damaged grains. This allows an original quantitative study of the  fragmentation of each grain in 3D. Experimental results on X-ray microtomographic images of a solid propellant fragmented under compression are presented and validated.

  12. Reconstruction of 3D ion beam micro-tomography data for applications in Cell Biology

    Habchi, C. [Universite de Bordeaux, Centre d' Etudes Nucleaires de Bordeaux Gradignan, UMR 5797, Gradignan F-33175 (France)], E-mail: habchi@cenbg.in2p3.fr; Nguyen, D.T.; Barberet, Ph. [Universite de Bordeaux, Centre d' Etudes Nucleaires de Bordeaux Gradignan, UMR 5797, Gradignan F-33175 (France); Incerti, S. [CNRS/IN2P3, Centre d' Etudes Nucleaires de Bordeaux Gradignan, UMR 5797, Gradignan F-33175 (France); Moretto, Ph. [Universite de Bordeaux, Centre d' Etudes Nucleaires de Bordeaux Gradignan, UMR 5797, Gradignan F-33175 (France); Sakellariou, A. [Research School of Physical Sciences and Engineering, Australian National University, Canberra ACT 0200 (Australia); Seznec, H. [CNRS/IN2P3, Centre d' Etudes Nucleaires de Bordeaux Gradignan, UMR 5797, Gradignan F-33175 (France)

    2009-06-15

    The DISRA (Discrete Image Space Reconstruction Algorithm) reconstruction code, created by A. Sakellariou, was conceived for the ideal case of complete three-dimensional (3D) PIXET (Particle Induced X-ray Emission Tomography) data. This implies two major difficulties for biological samples: first, the long duration of such experiments and second, the subsequent damage that occurs on such fragile specimens. For this reason, the DISRA code was extended at CENBG in order to probe isolated PIXET slices, taking into account the sample structure and mass density provided by 3D STIMT (Scanning Transmission Ion Microscopy Tomography) in the volume of interest. This modified version was tested on a phantom sample and first results on human cancer cells are also presented.

  13. Reconstruction of 3D ion beam micro-tomography data for applications in Cell Biology

    Habchi, C.; Nguyen, D. T.; Barberet, Ph.; Incerti, S.; Moretto, Ph.; Sakellariou, A.; Seznec, H.

    2009-06-01

    The DISRA (Discrete Image Space Reconstruction Algorithm) reconstruction code, created by A. Sakellariou, was conceived for the ideal case of complete three-dimensional (3D) PIXET (Particle Induced X-ray Emission Tomography) data. This implies two major difficulties for biological samples: first, the long duration of such experiments and second, the subsequent damage that occurs on such fragile specimens. For this reason, the DISRA code was extended at CENBG in order to probe isolated PIXET slices, taking into account the sample structure and mass density provided by 3D STIMT (Scanning Transmission Ion Microscopy Tomography) in the volume of interest. This modified version was tested on a phantom sample and first results on human cancer cells are also presented.

  14. Robust Stereo-Vision Based 3D Object Reconstruction for the Assistive Robot FRIEND

    COJBASIC, Z.

    2011-11-01

    Full Text Available A key requirement of assistive robot vision is the robust 3D object reconstruction in complex environments for reliable autonomous object manipulation. In this paper the idea is presented of achieving high robustness of a complete robot vision system against external influences such as variable illumination by including feedback control of the object segmentation in stereo images. The approach used is to change the segmentation parameters in closed-loop so that object features extraction is driven to a desired result. Reliable feature extraction is necessary to fully exploit a neuro-fuzzy classifier which is the core of the proposed 2D object recognition method, predecessor of 3D object reconstruction. Experimental results on the rehabilitation assistive robotic system FRIEND demonstrate the effectiveness of the proposed method.

  15. Hollow Cone Electron Imaging for Single Particle 3D Reconstruction of Proteins

    Tsai, Chun-Ying; Chang, Yuan-Chih; Lobato, Ivan; van Dyck, Dirk; Chen, Fu-Rong

    2016-06-01

    The main bottlenecks for high-resolution biological imaging in electron microscopy are radiation sensitivity and low contrast. The phase contrast at low spatial frequencies can be enhanced by using a large defocus but this strongly reduces the resolution. Recently, phase plates have been developed to enhance the contrast at small defocus but electrical charging remains a problem. Single particle cryo-electron microscopy is mostly used to minimize the radiation damage and to enhance the resolution of the 3D reconstructions but it requires averaging images of a massive number of individual particles. Here we present a new route to achieve the same goals by hollow cone dark field imaging using thermal diffuse scattered electrons giving about a 4 times contrast increase as compared to bright field imaging. We demonstrate the 3D reconstruction of a stained GroEL particle can yield about 13.5 Å resolution but using a strongly reduced number of images.

  16. Renal Tumor Cryoablation Planning. The Efficiency of Simulation on Reconstructed 3D CT Scan

    Ciprian Valerian LUCAN

    2010-12-01

    Full Text Available Introduction & Objective: Nephron-sparing surgical techniques risks are related to tumor relationships with adjacent anatomic structures. Complexity of the renal anatomy drives the interest to develop tools for 3D reconstruction and surgery simulation. The aim of the article was to assess the simulation on reconstructed 3D CT scan used for planning the cryoablation. Material & Method: A prospective randomized study was performed between Jan. 2007 and July 2009 on 27 patients who underwent retroperitoneoscopic T1a renal tumors cryoablation (RC. All patients were assessed preoperatively by CT scan, also used for 3D volume rendering. In the Gr.A, the patients underwent surgery planning by simulation on 3D CT scan. In the Gr.B., patients underwent standard RC. The two groups were compared in terms of surgical time, bleeding, postoperative drainage, analgesics requirement, hospital stay, time to socio-professional reintegration. Results: Fourteen patients underwent preoperative cryoablation planning (Gr.A and 13 patients underwent standard CR (Gr.B. All parameters analyzed were shorter in the Gr.A. On multivariate logistic regression, only shortens of the surgical time (138.79±5.51 min. in Gr.A. vs. 140.92±5.54 min in Gr.B. and bleeding (164.29±60.22 mL in Gr.A. vs. 215.38±100.80 mL in Gr.B. achieved statistical significance (p<0.05. The number of cryoneedles assessed by simulation had a 92.52% accuracy when compared with those effectively used. Conclusions: Simulation of the cryoablation using reconstructed 3D CT scan improves the surgical results. The application used for simulation was able to accurately assess the number of cryoneedles required for tumor ablation, their direction and approach.

  17. 3D Indoor Building Environment Reconstruction using calibration of Range finder Data

    Jamali, Ali; Anton, François; Rahman, Alias Abdul

    2015-01-01

    Nowadays, municipalities intend to have 3D city models for facility management, disaster management and architectural planning. 3D data acquisition can be done by laser scanning for indoor environment which is a costly and time consuming process. Currently, for indoor surveying, Electronic Distance...... Measurement (EDM) and Terrestrial Laser Scanner (TLS) are mostly used. In this paper, several techniques for indoor 3D building data acquisition have been investigated. For reducing the time and cost of indoor building data acquisition process, the Trimble LaserAce 1000 range finder is used. The accuracy...... of the rangefinder is evaluated and a simple spatial model is reconstructed from real data. This technique is rapid (it requires a shorter time as compared to others), but the results show inconsistencies in horizontal angles for short distances in indoor environments. The range finder was calibrated using a least...

  18. Surface topography study of prepared 3D printed moulds via 3D printer for silicone elastomer based nasal prosthesis

    Abdullah, Abdul Manaf; Din, Tengku Noor Daimah Tengku; Mohamad, Dasmawati; Rahim, Tuan Noraihan Azila Tuan; Akil, Hazizan Md; Rajion, Zainul Ahmad

    2016-12-01

    Conventional prosthesis fabrication is highly depends on the hand creativity of laboratory technologist. The development in 3D printing technology offers a great help in fabricating affordable and fast yet esthetically acceptable prostheses. This study was conducted to discover the potential of 3D printed moulds for indirect silicone elastomer based nasal prosthesis fabrication. Moulds were designed using computer aided design (CAD) software (Solidworks, USA) and converted into the standard tessellation language (STL) file. Three moulds with layer thickness of 0.1, 0.2 and 0.3mm were printed utilizing polymer filament based 3D printer (Makerbot Replicator 2X, Makerbot, USA). Another one mould was printed utilizing liquid resin based 3D printer (Objet 30 Scholar, Stratasys, USA) as control. The printed moulds were then used to fabricate maxillofacial silicone specimens (n=10)/mould. Surface profilometer (Surfcom Flex, Accretech, Japan), digital microscope (KH77000, Hirox, USA) and scanning electron microscope (Quanta FEG 450, Fei, USA) were used to measure the surface roughness as well as the topological properties of fabricated silicone. Statistical analysis of One-Way ANOVA was employed to compare the surface roughness of the fabricated silicone elastomer. Result obtained demonstrated significant differences in surface roughness of the fabricated silicone (p<0.01). Further post hoc analysis also revealed significant differences in silicone fabricated using different 3D printed moulds (p<0.01). A 3D printed mould was successfully prepared and characterized. With surface topography that could be enhanced, inexpensive and rapid mould fabrication techniques, polymer filament based 3D printer is potential for indirect silicone elastomer based nasal prosthesis fabrication.

  19. Surface-preserving robust watermarking of 3-D shapes.

    Luo, Ming; Bors, Adrian G

    2011-10-01

    This paper describes a new statistical approach for watermarking mesh representations of 3-D graphical objects. A robust digital watermarking method has to mitigate among the requirements of watermark invisibility, robustness, embedding capacity and key security. The proposed method employs a mesh propagation distance metric procedure called the fast marching method (FMM), which defines regions of equal geodesic distance width calculated with respect to a reference location on the mesh. Each of these regions is used for embedding a single bit. The embedding is performed by changing the normalized distribution of local geodesic distances from within each region. Two different embedding methods are used by changing the mean or the variance of geodesic distance distributions. Geodesic distances are slightly modified statistically by displacing the vertices in their existing triangle planes. The vertex displacements, performed according to the FMM, ensure a minimal surface distortion while embedding the watermark code. Robustness to a variety of attacks is shown according to experimental results.

  20. 3D Surface-based Detection of Pleural Thickenings

    P. Faltin

    2011-01-01

    Full Text Available Pleuramesothelioma is a malignant tumor of the pleura. It evolves from pleural thickenings which are a typical long-term effect of asbestos exposure. A diagnosis is performed by examining CT scans acquired from the patient’s lung. The analysis of the image data is a very time-consuming task and is subject to strong inter- and intra-reader variances. To objectivize the analysis and to speed-up the diagnosis a full automatic system is developed. An essential step in this process is to identify potential thickenings. In this paper we describe the complete system in brief, and then take a closer look on thickening detection. A CT slice based approach is presented here. It is extended by using 3D knowledge of thelung surface which could scarcely have been acquired visually.

  1. 3D Modeling of Murine Abdominal Aortic Aneurysms: Quantification of Segmentation and Volumetric Reconstruction

    Sarmiento, Paula A; Adelsperger, Amelia R; Goergen, Craig J.

    2016-01-01

    Abdominal Aortic Aneurysms (AAA) cause 5,900 deaths in the United States each year. Surgical intervention is clinically studied by non-invasive techniques such as computed tomography and magnetic resonance imaging. However, three-dimensional (3D) ultrasound imaging has become an inexpensive alternative and useful tool to characterize aneurysms, allowing for reconstruction of the vessel, quantification of hemodynamics through computational fluid dynamics (CFD) simulation, and possible predicti...

  2. Free-hand 3D reconstruction and tumor segmentation of Laparoscopic Ultrasounds for pancreatic MIS interventions

    Fernández Pena, A.; Viana Matesanz, M.; Rodríguez Vila, Borja; Oropesa García, Ignacio; Sánchez González, Patricia; Sánchez Margallo, Juan Antonio; Moyano García-Cuevas, J.L.; Sánchez Margallo, Francisco Miguel; Gómez Aguilera, Enrique J.

    2015-01-01

    Pancreatic cancer's treatment dilemma comes while trying to determine the precise nature of the lesion. The best approach is defined by diagnose of the tumor cells' staging. This paper presents a fast approach towards acquiring an estimation of the tumor positioning and size through laparoscopic ultrasound (LUS) images. The method segments 2D images of pancreas and lesions before reconstructing the extracted tumors into a full 3D volume. The whole method is integrated into a visualization and...

  3. PCA-based 3D Shape Reconstruction of Human Foot Using Multiple Viewpoint Cameras

    Edmée Amstutz; Tomoaki Teshima; Makoto Kimura; Masaaki Mochimaru; Hideo Saito

    2008-01-01

    This paper describes a multiple camera-based method to reconstruct the 3D shape of a human foot. From a foot database,an initial 3D model of the foot represented by a cloud of points is built. The shape parameters, which can characterize more than 92% of a foot, are defined by using the principal component analysis method. Then, using "active shape models", the initial 3D model is adapted to the real foot captured in multiple images by applying some constraints (edge points' distance and color variance). We insist here on the experiment part where we demonstrate the efficiency of the proposed method on a plastic foot model, and also on real human feet with various shapes. We propose and compare different ways of texturing the foot which is needed for reconstruction. We present an experiment performed on the plastic foot model and on human feet and propose two different ways to improve the final 3D shape's accuracy according to the previous experiments' results. The first improvement proposed is the densification of the cloud of points used to represent the initial model and the foot database. The second improvement concerns the projected patterns used to texture the foot. We conclude by showing the obtained results for a human foot with the average computed shape error being only 1.06mm.

  4. Sensor fusion of cameras and a laser for city-scale 3D reconstruction.

    Bok, Yunsu; Choi, Dong-Geol; Kweon, In So

    2014-11-04

    This paper presents a sensor fusion system of cameras and a 2D laser sensorfor large-scale 3D reconstruction. The proposed system is designed to capture data on afast-moving ground vehicle. The system consists of six cameras and one 2D laser sensor,and they are synchronized by a hardware trigger. Reconstruction of 3D structures is doneby estimating frame-by-frame motion and accumulating vertical laser scans, as in previousworks. However, our approach does not assume near 2D motion, but estimates free motion(including absolute scale) in 3D space using both laser data and image features. In orderto avoid the degeneration associated with typical three-point algorithms, we present a newalgorithm that selects 3D points from two frames captured by multiple cameras. The problemof error accumulation is solved by loop closing, not by GPS. The experimental resultsshow that the estimated path is successfully overlaid on the satellite images, such that thereconstruction result is very accurate.

  5. 3D TEM reconstruction and segmentation process of laminar bio-nanocomposites

    Iturrondobeitia, M., E-mail: maider.iturrondobeitia@ehu.es; Okariz, A.; Fernandez-Martinez, R.; Jimbert, P.; Guraya, T.; Ibarretxe, J. [eMERG, University of the Basque Country, Rafael Moreno Pitxitxi street 2 and 3, 48013, Bilbao (Spain)

    2015-03-30

    The microstructure of laminar bio-nanocomposites (Poly (lactic acid)(PLA)/clay) depends on the amount of clay platelet opening after integration with the polymer matrix and determines the final properties of the material. Transmission electron microscopy (TEM) technique is the only one that can provide a direct observation of the layer dispersion and the degree of exfoliation. However, the orientation of the clay platelets, which affects the final properties, is practically immeasurable from a single 2D TEM image. This issue can be overcome using transmission electron tomography (ET), a technique that allows the complete 3D characterization of the structure, including the measurement of the orientation of clay platelets, their morphology and their 3D distribution. ET involves a 3D reconstruction of the study volume and a subsequent segmentation of the study object. Currently, accurate segmentation is performed manually, which is inefficient and tedious. The aim of this work is to propose an objective/automated segmentation methodology process of a 3D TEM tomography reconstruction. In this method the segmentation threshold is optimized by minimizing the variation of the dimensions of the segmented objects and matching the segmented V{sub clay} (%) and the actual one. The method is first validated using a fictitious set of objects, and then applied on a nanocomposite.

  6. Sensor Fusion of Cameras and a Laser for City-Scale 3D Reconstruction

    Yunsu Bok

    2014-11-01

    Full Text Available This paper presents a sensor fusion system of cameras and a 2D laser sensorfor large-scale 3D reconstruction. The proposed system is designed to capture data on afast-moving ground vehicle. The system consists of six cameras and one 2D laser sensor,and they are synchronized by a hardware trigger. Reconstruction of 3D structures is doneby estimating frame-by-frame motion and accumulating vertical laser scans, as in previousworks. However, our approach does not assume near 2D motion, but estimates free motion(including absolute scale in 3D space using both laser data and image features. In orderto avoid the degeneration associated with typical three-point algorithms, we present a newalgorithm that selects 3D points from two frames captured by multiple cameras. The problemof error accumulation is solved by loop closing, not by GPS. The experimental resultsshow that the estimated path is successfully overlaid on the satellite images, such that thereconstruction result is very accurate.

  7. Generic camera model and its calibration for computational integral imaging and 3D reconstruction.

    Li, Weiming; Li, Youfu

    2011-03-01

    Integral imaging (II) is an important 3D imaging technology. To reconstruct 3D information of the viewed objects, modeling and calibrating the optical pickup process of II are necessary. This work focuses on the modeling and calibration of an II system consisting of a lenslet array, an imaging lens, and a charge-coupled device camera. Most existing work on such systems assumes a pinhole array model (PAM). In this work, we explore a generic camera model that accommodates more generality. This model is an empirical model based on measurements, and we constructed a setup for its calibration. Experimental results show a significant difference between the generic camera model and the PAM. Images of planar patterns and 3D objects were computationally reconstructed with the generic camera model. Compared with the images reconstructed using the PAM, the images present higher fidelity and preserve more high spatial frequency components. To the best of our knowledge, this is the first attempt in applying a generic camera model to an II system.

  8. Real-Time 3D Tracking and Reconstruction on Mobile Phones.

    Prisacariu, Victor Adrian; Kähler, Olaf; Murray, David W; Reid, Ian D

    2015-05-01

    We present a novel framework for jointly tracking a camera in 3D and reconstructing the 3D model of an observed object. Due to the region based approach, our formulation can handle untextured objects, partial occlusions, motion blur, dynamic backgrounds and imperfect lighting. Our formulation also allows for a very efficient implementation which achieves real-time performance on a mobile phone, by running the pose estimation and the shape optimisation in parallel. We use a level set based pose estimation but completely avoid the, typically required, explicit computation of a global distance. This leads to tracking rates of more than 100 Hz on a desktop PC and 30 Hz on a mobile phone. Further, we incorporate additional orientation information from the phone's inertial sensor which helps us resolve the tracking ambiguities inherent to region based formulations. The reconstruction step first probabilistically integrates 2D image statistics from selected keyframes into a 3D volume, and then imposes coherency and compactness using a total variational regularisation term. The global optimum of the overall energy function is found using a continuous max-flow algorithm and we show that, similar to tracking, the integration of per voxel posteriors instead of likelihoods improves the precision and accuracy of the reconstruction.

  9. Quality Analysis on 3d Buidling Models Reconstructed from Uav Imagery

    Jarzabek-Rychard, M.; Karpina, M.

    2016-06-01

    Recent developments in UAV technology and structure from motion techniques have effected that UAVs are becoming standard platforms for 3D data collection. Because of their flexibility and ability to reach inaccessible urban parts, drones appear as optimal solution for urban applications. Building reconstruction from the data collected with UAV has the important potential to reduce labour cost for fast update of already reconstructed 3D cities. However, especially for updating of existing scenes derived from different sensors (e.g. airborne laser scanning), a proper quality assessment is necessary. The objective of this paper is thus to evaluate the potential of UAV imagery as an information source for automatic 3D building modeling at LOD2. The investigation process is conducted threefold: (1) comparing generated SfM point cloud to ALS data; (2) computing internal consistency measures of the reconstruction process; (3) analysing the deviation of Check Points identified on building roofs and measured with a tacheometer. In order to gain deep insight in the modeling performance, various quality indicators are computed and analysed. The assessment performed according to the ground truth shows that the building models acquired with UAV-photogrammetry have the accuracy of less than 18 cm for the plannimetric position and about 15 cm for the height component.

  10. 3D virtual reconstruction of the Pleistocene cheetah skull from the Tangshan, Nanjing, China

    DONG Wei; HOU Xinwen; LIU Jinyi; FANG Yingsan; JIN Changzhu; ZHU Qizhi

    2007-01-01

    The development of computer tomography and image processing has made it possible to establish virtual 3D reconstruction and non-invasive dissection of fossil specimens. We used these methods to reconstruct a virtual 3D skull of a Pleistocene cheetah skull from the Tuozi cave, Tangshan, Nanjing, and virtually dissected it for anatomic studies, and measured the volumes of different parts of the endocranium. The endocranium of the cheetah skull has showed that its frontal sinus is beehive-like, the frontal lobe of cerebra is relatively large but the temporal lobe is relatively small, its cerebral sulcus and gyrus are more complicated than those of the domestic cat, similar to those of the domestic dog, but simpler than those of giant panda, pig, cattle and horse. The technology of virtual 3D reconstruction and non-invasive dissection of fossil specimens can extend the morphological study from the exterior to the interior, and it can also help to study fragile specimens and virtually backup rare and precious specimens.

  11. Comparison of 3D Reconstructive Technologies Used for Morphometric Research and the Translation of Knowledge Using a Decision Matrix

    Martin, Charys M.; Roach, Victoria A.; Nguyen, Ngan; Rice, Charles L.; Wilson, Timothy D.

    2013-01-01

    The use of three-dimensional (3D) models for education, pre-operative assessment, presurgical planning, and measurement have become more prevalent. With the increase in prevalence of 3D models there has also been an increase in 3D reconstructive software programs that are used to create these models. These software programs differ in…

  12. A novel 3D template for mandible and maxilla reconstruction: Rapid prototyping using stereolithography

    Samir Kumta

    2015-01-01

    Full Text Available Introduction: Replication of the exact three-dimensional (3D structure of the maxilla and mandible is now a priority whilst attempting reconstruction of these bones to attain a complete functional and aesthetic rehabilitation. We hereby present the process of rapid prototyping using stereolithography to produce templates for modelling bone grafts and implants for maxilla/mandible reconstructions, its applications in tumour/trauma, and outcomes for primary and secondary reconstruction. Materials and Methods: Stereolithographic template-assisted reconstruction was used on 11 patients for the reconstruction of the mandible/maxilla primarily following tumour excision and secondarily for the realignment of post-traumatic malunited fractures or deformity corrections. Data obtained from the computed tomography (CT scans with 1-mm resolution were converted into a computer-aided design (CAD using the CT Digital Imaging and Communications in Medicine (DICOM data. Once a CAD model was constructed, it was converted into a stereolithographic format and then processed by the rapid prototyping technology to produce the physical anatomical model using a resin. This resin model replicates the native mandible, which can be thus used off table as a guide for modelling the bone grafts. Discussion: This conversion of two-dimensional (2D data from CT scan into 3D models is a very precise guide to shaping the bone grafts. Further, this CAD can reconstruct the defective half of the mandible using the mirror image principle, and the normal anatomical model can be created to aid secondary reconstructions. Conclusion: This novel approach allows a precise translation of the treatment plan directly to the surgical field. It is also an important teaching tool for implant moulding and fixation, and helps in patient counselling.

  13. Parallelizable 3D statistical reconstruction for C-arm tomosynthesis system

    Wang, Beilei; Barner, Kenneth; Lee, Denny

    2005-04-01

    Clinical diagnosis and security detection tasks increasingly require 3D information which is difficult or impossible to obtain from 2D (two dimensional) radiographs. As a 3D (three dimensional) radiographic and non-destructive imaging technique, digital tomosynthesis is especially fit for cases where 3D information is required while a complete projection data is not available. Nowadays, FBP (filtered back projection) is extensively used in industry for its fast speed and simplicity. However, it is hard to deal with situations where only a limited number of projections from constrained directions are available, or the SNR (signal to noises ratio) of the projections is low. In order to deal with noise and take into account a priori information of the object, a statistical image reconstruction method is described based on the acquisition model of X-ray projections. We formulate a ML (maximum likelihood) function for this model and develop an ordered-subsets iterative algorithm to estimate the unknown attenuation of the object. Simulations show that satisfied results can be obtained after 1 to 2 iterations, and after that there is no significant improvement of the image quality. An adaptive wiener filter is also applied to the reconstructed image to remove its noise. Some approximations to speed up the reconstruction computation are also considered. Applying this method to computer generated projections of a revised Shepp phantom and true projections from diagnostic radiographs of a patient"s hand and mammography images yields reconstructions with impressive quality. Parallel programming is also implemented and tested. The quality of the reconstructed object is conserved, while the computation time is considerably reduced by almost the number of threads used.

  14. Rapid reconstruction of 3D neuronal morphology from light microscopy images with augmented rayburst sampling.

    Ming, Xing; Li, Anan; Wu, Jingpeng; Yan, Cheng; Ding, Wenxiang; Gong, Hui; Zeng, Shaoqun; Liu, Qian

    2013-01-01

    Digital reconstruction of three-dimensional (3D) neuronal morphology from light microscopy images provides a powerful technique for analysis of neural circuits. It is time-consuming to manually perform this process. Thus, efficient computer-assisted approaches are preferable. In this paper, we present an innovative method for the tracing and reconstruction of 3D neuronal morphology from light microscopy images. The method uses a prediction and refinement strategy that is based on exploration of local neuron structural features. We extended the rayburst sampling algorithm to a marching fashion, which starts from a single or a few seed points and marches recursively forward along neurite branches to trace and reconstruct the whole tree-like structure. A local radius-related but size-independent hemispherical sampling was used to predict the neurite centerline and detect branches. Iterative rayburst sampling was performed in the orthogonal plane, to refine the centerline location and to estimate the local radius. We implemented the method in a cooperative 3D interactive visualization-assisted system named flNeuronTool. The source code in C++ and the binaries are freely available at http://sourceforge.net/projects/flneurontool/. We validated and evaluated the proposed method using synthetic data and real datasets from the Digital Reconstruction of Axonal and Dendritic Morphology (DIADEM) challenge. Then, flNeuronTool was applied to mouse brain images acquired with the Micro-Optical Sectioning Tomography (MOST) system, to reconstruct single neurons and local neural circuits. The results showed that the system achieves a reasonable balance between fast speed and acceptable accuracy, which is promising for interactive applications in neuronal image analysis.

  15. Rapid reconstruction of 3D neuronal morphology from light microscopy images with augmented rayburst sampling.

    Xing Ming

    Full Text Available Digital reconstruction of three-dimensional (3D neuronal morphology from light microscopy images provides a powerful technique for analysis of neural circuits. It is time-consuming to manually perform this process. Thus, efficient computer-assisted approaches are preferable. In this paper, we present an innovative method for the tracing and reconstruction of 3D neuronal morphology from light microscopy images. The method uses a prediction and refinement strategy that is based on exploration of local neuron structural features. We extended the rayburst sampling algorithm to a marching fashion, which starts from a single or a few seed points and marches recursively forward along neurite branches to trace and reconstruct the whole tree-like structure. A local radius-related but size-independent hemispherical sampling was used to predict the neurite centerline and detect branches. Iterative rayburst sampling was performed in the orthogonal plane, to refine the centerline location and to estimate the local radius. We implemented the method in a cooperative 3D interactive visualization-assisted system named flNeuronTool. The source code in C++ and the binaries are freely available at http://sourceforge.net/projects/flneurontool/. We validated and evaluated the proposed method using synthetic data and real datasets from the Digital Reconstruction of Axonal and Dendritic Morphology (DIADEM challenge. Then, flNeuronTool was applied to mouse brain images acquired with the Micro-Optical Sectioning Tomography (MOST system, to reconstruct single neurons and local neural circuits. The results showed that the system achieves a reasonable balance between fast speed and acceptable accuracy, which is promising for interactive applications in neuronal image analysis.

  16. Fast, automatic, and accurate catheter reconstruction in HDR brachytherapy using an electromagnetic 3D tracking system

    Poulin, Eric; Racine, Emmanuel; Beaulieu, Luc, E-mail: Luc.Beaulieu@phy.ulaval.ca [Département de physique, de génie physique et d’optique et Centre de recherche sur le cancer de l’Université Laval, Université Laval, Québec, Québec G1V 0A6, Canada and Département de radio-oncologie et Axe Oncologie du Centre de recherche du CHU de Québec, CHU de Québec, 11 Côte du Palais, Québec, Québec G1R 2J6 (Canada); Binnekamp, Dirk [Integrated Clinical Solutions and Marketing, Philips Healthcare, Veenpluis 4-6, Best 5680 DA (Netherlands)

    2015-03-15

    Purpose: In high dose rate brachytherapy (HDR-B), current catheter reconstruction protocols are relatively slow and error prone. The purpose of this technical note is to evaluate the accuracy and the robustness of an electromagnetic (EM) tracking system for automated and real-time catheter reconstruction. Methods: For this preclinical study, a total of ten catheters were inserted in gelatin phantoms with different trajectories. Catheters were reconstructed using a 18G biopsy needle, used as an EM stylet and equipped with a miniaturized sensor, and the second generation Aurora{sup ®} Planar Field Generator from Northern Digital Inc. The Aurora EM system provides position and orientation value with precisions of 0.7 mm and 0.2°, respectively. Phantoms were also scanned using a μCT (GE Healthcare) and Philips Big Bore clinical computed tomography (CT) system with a spatial resolution of 89 μm and 2 mm, respectively. Reconstructions using the EM stylet were compared to μCT and CT. To assess the robustness of the EM reconstruction, five catheters were reconstructed twice and compared. Results: Reconstruction time for one catheter was 10 s, leading to a total reconstruction time inferior to 3 min for a typical 17-catheter implant. When compared to the μCT, the mean EM tip identification error was 0.69 ± 0.29 mm while the CT error was 1.08 ± 0.67 mm. The mean 3D distance error was found to be 0.66 ± 0.33 mm and 1.08 ± 0.72 mm for the EM and CT, respectively. EM 3D catheter trajectories were found to be more accurate. A maximum difference of less than 0.6 mm was found between successive EM reconstructions. Conclusions: The EM reconstruction was found to be more accurate and precise than the conventional methods used for catheter reconstruction in HDR-B. This approach can be applied to any type of catheters and applicators.

  17. Application of 3D photo-reconstruction in soil erosion studies

    Castillo, Carlos; James, Michael; Pérez, Rafael; Gómez, Jose Alfonso

    2014-05-01

    3D photo-reconstruction (3D-PR) has been applied successfully to obtain elevation models using uncalibrated and nonmetric cameras for a range of geoscience applications (e.g. James and Robson, 2012), including gully erosion assessment (Castillo et al., 2012). However, its application in soil erosion studies is currently at the outset. The aim of this work is to compare 3D-PR with conventional techniques that have been employed traditionally for different purposes in soil erosion studies. In this preliminary work, we tested three applications that involve volume calculations: estimation of soil bulk density (BD), quantification of soil erosion at road banks (RB) and sedimentation rates behind check dams (CD). For each analysis, a PR field survey was carried out simultaneously with a conventional method (volume of water was used for BD, and total station surveys for RB and CD). For the 3D-PR technique, the accuracy as a function of the number of pictures taken was evaluated. In this study we explore the difference in the volume estimates between 3D-PR and conventional techniques as well as the time requirements for each method in order to compare their performance and optimal field of application.

  18. Reconstruction of 3D structure using stochastic methods: morphology and transport properties

    Karsanina, Marina; Gerke, Kirill; Čapek, Pavel; Vasilyev, Roman; Korost, Dmitry; Skvortsova, Elena

    2013-04-01

    One of the main factors defining numerous flow phenomena in rocks, soils and other porous media, including fluid and solute movements, is pore structure, e.g., pore sizes and their connectivity. Numerous numerical methods were developed to quantify single and multi-phase flow in such media on microscale. Among most popular ones are: 1) a wide range of finite difference/element/volume solutions of Navier-Stokes equations and its simplifications; 2) lattice-Boltzmann method; 3) pore-network models, among others. Each method has some advantages and shortcomings, so that different research teams usually utilize more than one, depending on the study case. Recent progress in 3D imaging of internal structure, e.g., X-ray tomography, FIB-SEM and confocal microscopy, made it possible to obtain digitized input pore parameters for such models, however, a trade-off between resolution and sample size is usually unavoidable. There are situations then only standard two-dimensional information of porous structure is known due to tomography high cost or resolution limitations. However, physical modeling on microscale requires 3D information. There are three main approaches to reconstruct (using 2D cut(s) or some other limited information/properties) porous media: 1) statistical methods (correlation functions and simulated annealing, multi-point statistics, entropy methods), 2) sequential methods (sphere or other granular packs) and 3) morphological methods. Stochastic reconstructions using correlation functions possess some important advantage - they provide a statistical description of the structure, which is known to have relationships with all physical properties. In addition, this method is more flexible for other applications to characterize porous media. Taking different 3D scans of natural and artificial porous materials (sandstones, soils, shales, ceramics) we choose some 2D cut/s as sources of input correlation functions. Based on different types of correlation functions

  19. Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images

    Xu Zhiliang

    2010-01-01

    Full Text Available We study the problem of segmenting, reconstructing, and analyzing the structure growth of thrombi (clots in blood vessels in vivo based on 2-photon microscopic image data. First, we develop an algorithm for segmenting clots in 3D microscopic images based on density-based clustering and methods for dealing with imaging artifacts. Next, we apply the union-of-balls (or alpha-shape algorithm to reconstruct the boundary of clots in 3D. Finally, we perform experimental studies and analysis on the reconstructed clots and obtain quantitative data of thrombus growth and structures. We conduct experiments on laser-induced injuries in vessels of two types of mice (the wild type and the type with low levels of coagulation factor VII and analyze and compare the developing clot structures based on their reconstructed clots from image data. The results we obtain are of biomedical significance. Our quantitative analysis of the clot composition leads to better understanding of the thrombus development, and is valuable to the modeling and verification of computational simulation of thrombogenesis.

  20. 3-D reconstruction of a human fetus with combined holoprosencephaly and cyclopia

    Meiselbach Veronika

    2009-06-01

    Full Text Available Abstract Background The purpose of this study was to examine a human fetus with combined holoprosencephaly and cyclopia by means of histology and 3-D reconstruction to determine the internal structure and extent of the malformation. Methods The head from a human fetus at 20 weeks gestation and a diagnosis of holoprosencephaly and cyclopia was investigated histologically and three-dimensionally reconstructed with CAD techniques. The cranial bones, blood vessels, nerves, eye and brain anlagen were reconstructed. Results The 3-D reconstruction revealed both severe malformation and absence of the facial midline bones above the maxilla, and a malformation of the maxilla and sphenoid bone. The mandible, posterior cranial bones, cranial nerves and blood vessels were normal. A synophthalmic eye with two lenses was found. The prosencephalon was a single small protrusion above the diencephalon. No nasal cavity was present. Above the single eye a proboscis was found. Conclusion The absence of the facial midline bones above the maxilla and the presence of a proboscis as a nose-like structure above the cyclopic eye both mean that there was a developmental defect in the fronto-nasal facial process of this fetus.

  1. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-01-01

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs’ configuration schemes and the proposed cross-track reconstruction method. PMID:27556471

  2. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction.

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-08-22

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs' configuration schemes and the proposed cross-track reconstruction method.

  3. Reliability of a 3D surface laser scanner for orthodontic applications.

    Kusnoto, Budi; Evans, Carla A

    2002-10-01

    A device for recreating three-dimensional (3D) objects on a computer is the surface laser scanner. By triangulating distances between the reflecting laser beam and the scanned surface, the surface laser scanner can detect not only an object's length and width but also its depth. The scanner's ease of use has opened various possibilities in laboratory research and clinical investigation. We assessed the reliability of generating 3D object reconstructions using the Minolta Vivid700 3D surface laser scanner (Minolta USA, Ramsey, NJ). Accuracy and reproducibility were tested on a geometrical calibrated cylinder, a dental study model, and a plaster facial model. Tests were conducted at varying distances between the object and the scanner. It was found that (1) in the calibrated cylinder tests, spatial distance measurement was accurate to 0.5 mm (+/- 0.1 mm) in the vertical dimension and 0.3 mm (+/- 0.3 mm) in the horizontal dimension; (2) in the study model test, molar width was accurate to 0.2 mm (+/- 0.1 mm, P >.05), and palatal vault depth could be measured to 0.7 mm (+/- 0.2 mm, P > 0.05); and (3) for the facial model, an accuracy of 1.9 +/- 0.8 mm was obtained. The findings suggest that the surface laser scanner has great research potential because of its accuracy and ease of use. Treatment changes, growth, surgical simulations, and many other orthodontic applications can be approached 3-dimensionally with this device.

  4. Implementation of a fully 3D system model for brain SPECT with fan- beam-collimator OSEM reconstruction with 3D total variation regularization

    Ye, Hongwei; Krol, Andrzej; Lipson, Edward D.; Lu, Yao; Xu, Yuesheng; Lee, Wei; Feiglin, David H.

    2007-03-01

    In order to improve tomographically reconstructed image quality, we have implemented a fully 3D reconstruction, using an ordered subsets expectation maximization (OSEM) algorithm for fan-beam collimator (FBC) SPECT, along with a volumetric system model-fan-volume system model (FVSM), a modified attenuation compensation, a 3D depth- and angle-dependent resolution and sensitivity correction, and a 3D total variation (TV) regularization. SPECT data were acquired in a 128x64 matrix, in 120 views with a circular orbit. The numerical Zubal brain phantom was used to simulate a FBC HMPAO Tc-99m brain SPECT scan, and a low noise and scatter-free projection dataset was obtained using the SimSET Monte Carlo package. A SPECT scan for a mini-Defrise phantom and brain HMPAO SPECT scans for five patients were acquired with a triple-head gamma camera (Triad 88) equipped with a low-energy high-resolution (LEHR) FBC. The reconstructed images, obtained using clinical filtered back projection (FBP), OSEM with a line-length system model (LLSM) and 3D TV regularization, and OSEM with FVSM and 3D TV regularization were quantitatively studied. Overall improvement in the image quality has been observed, including better axial and transaxial resolution, better integral uniformity, higher contrast-to-noise ration between the gray matter and the white matter, and better accuracy and lower bias in OSEM-FVSM, compared with OSEM-LLSM and clinical FBP.

  5. Three-dimensional measurement of small inner surface profiles using feature-based 3-D panoramic registration

    Gong, Yuanzheng; Seibel, Eric J.

    2017-01-01

    Rapid development in the performance of sophisticated optical components, digital image sensors, and computer abilities along with decreasing costs has enabled three-dimensional (3-D) optical measurement to replace more traditional methods in manufacturing and quality control. The advantages of 3-D optical measurement, such as noncontact, high accuracy, rapid operation, and the ability for automation, are extremely valuable for inline manufacturing. However, most of the current optical approaches are eligible for exterior instead of internal surfaces of machined parts. A 3-D optical measurement approach is proposed based on machine vision for the 3-D profile measurement of tiny complex internal surfaces, such as internally threaded holes. To capture the full topographic extent (peak to valley) of threads, a side-view commercial rigid scope is used to collect images at known camera positions and orientations. A 3-D point cloud is generated with multiview stereo vision using linear motion of the test piece, which is repeated by a rotation to form additional point clouds. Registration of these point clouds into a complete reconstruction uses a proposed automated feature-based 3-D registration algorithm. The resulting 3-D reconstruction is compared with x-ray computed tomography to validate the feasibility of our proposed method for future robotically driven industrial 3-D inspection.

  6. 3D RECONSTRUCTION OF BUILDINGS WITH GABLED AND HIPPED STRUCTURES USING LIDAR DATA

    H. Amini

    2014-10-01

    Full Text Available Buildings are the most important objects in urban areas. Thus, building detection using photogrammetry and remote sensing data as well as 3D model of buildings are very useful for many applications such as mobile navigation, tourism, and disaster management. In this paper, an approach has been proposed for detecting buildings by LiDAR data and aerial images, as well as reconstructing 3D model of buildings. In this regard, firstly, building detection carried out by utilizing a Supper Vector Machine (SVM as a supervise method. The supervise methods need training data that could be collected from some features. Hence, LiDAR data and aerial images were utilized to produce some features. The features were selected by considering their abilities for separating buildings from other objects. The evaluation results of building detection showed high accuracy and precision of the utilized approach. The detected buildings were labeled in order to reconstruct buildings, individually. Then the planes of each building were separated and adjacent planes were recognized to reduce the calculation volume and to increase the accuracy. Subsequently, the bottom planes of each building were detected in order to compute the corners of hipped roofs using intersection of three adjacent planes. Also, the corners of gabled roofs were computed by both calculating the intersection line of the adjacent planes and finding the intersection between the planes intersection line and their detected parcel. Finally, the coordinates of some nodes in building floor were computed and 3D model reconstruction was carried out. In order to evaluate the proposed method, 3D model of some buildings with different complexity level were generated. The evaluation results showed that the proposed method has reached credible performance.

  7. 3D reconstruction of digitized histological sections for vasculature quantification in the mouse hind limb

    Xu, Yiwen; Pickering, J. Geoffrey; Nong, Zengxuan; Gibson, Eli; Ward, Aaron D.

    2014-03-01

    In contrast to imaging modalities such as magnetic resonance imaging and micro computed tomography, digital histology reveals multiple stained tissue features at high resolution (0.25μm/pixel). However, the two-dimensional (2D) nature of histology challenges three-dimensional (3D) quantification and visualization of the different tissue components, cellular structures, and subcellular elements. This limitation is particularly relevant to the vasculature, which has a complex and variable structure within tissues. The objective of this study was to perform a fully automated 3D reconstruction of histology tissue in the mouse hind limb preserving the accurate systemic orientation of the tissues, stained with hematoxylin and immunostained for smooth muscle α actin. We performed a 3D reconstruction using pairwise rigid registrations of 5μm thick, paraffin-embedded serial sections, digitized at 0.25μm/pixel. Each registration was performed using the iterative closest points algorithm on blood vessel landmarks. Landmarks were vessel centroids, determined according to a signed distance map of each pixel to a decision boundary in hue-saturation-value color space; this decision boundary was determined based on manual annotation of a separate training set. Cell nuclei were then automatically extracted and corresponded to refine the vessel landmark registration. Homologous nucleus landmark pairs appearing on not more than two adjacent slides were chosen to avoid registrations which force curved or non-sectionorthogonal structures to be straight and section-orthogonal. The median accumulated target registration errors ± interquartile ranges for the vessel landmark registration, and the nucleus landmark refinement were 43.4+/-42.8μm and 2.9+/-1.7μm, respectively (p<0.0001). Fully automatic and accurate 3D rigid reconstruction of mouse hind limb histology imaging is feasible based on extracted vasculature and nuclei.

  8. Real-time 3D computed tomographic reconstruction using commodity graphics hardware

    Xu, Fang; Mueller, Klaus

    2007-07-01

    The recent emergence of various types of flat-panel x-ray detectors and C-arm gantries now enables the construction of novel imaging platforms for a wide variety of clinical applications. Many of these applications require interactive 3D image generation, which cannot be satisfied with inexpensive PC-based solutions using the CPU. We present a solution based on commodity graphics hardware (GPUs) to provide these capabilities. While GPUs have been employed for CT reconstruction before, our approach provides significant speedups by exploiting the various built-in hardwired graphics pipeline components for the most expensive CT reconstruction task, backprojection. We show that the timings so achieved are superior to those obtained when using the GPU merely as a multi-processor, without a drop in reconstruction quality. In addition, we also show how the data flow across the graphics pipeline can be optimized, by balancing the load among the pipeline components. The result is a novel streaming CT framework that conceptualizes the reconstruction process as a steady flow of data across a computing pipeline, updating the reconstruction result immediately after the projections have been acquired. Using a single PC equipped with a single high-end commodity graphics board (the Nvidia 8800 GTX), our system is able to process clinically-sized projection data at speeds meeting and exceeding the typical flat-panel detector data production rates, enabling throughput rates of 40-50 projections s-1 for the reconstruction of 5123 volumes.

  9. Real-time 3D computed tomographic reconstruction using commodity graphics hardware

    Xu Fang; Mueller, Klaus [Center for Visual Computing, Computer Science Department, Stony Brook University, Stony Brook, NY 11794-4400 (United States)

    2007-07-21

    The recent emergence of various types of flat-panel x-ray detectors and C-arm gantries now enables the construction of novel imaging platforms for a wide variety of clinical applications. Many of these applications require interactive 3D image generation, which cannot be satisfied with inexpensive PC-based solutions using the CPU. We present a solution based on commodity graphics hardware (GPUs) to provide these capabilities. While GPUs have been employed for CT reconstruction before, our approach provides significant speedups by exploiting the various built-in hardwired graphics pipeline components for the most expensive CT reconstruction task, backprojection. We show that the timings so achieved are superior to those obtained when using the GPU merely as a multi-processor, without a drop in reconstruction quality. In addition, we also show how the data flow across the graphics pipeline can be optimized, by balancing the load among the pipeline components. The result is a novel streaming CT framework that conceptualizes the reconstruction process as a steady flow of data across a computing pipeline, updating the reconstruction result immediately after the projections have been acquired. Using a single PC equipped with a single high-end commodity graphics board (the Nvidia 8800 GTX), our system is able to process clinically-sized projection data at speeds meeting and exceeding the typical flat-panel detector data production rates, enabling throughput rates of 40-50 projections s{sup -1} for the reconstruction of 512{sup 3} volumes.

  10. Large deformation diffeomorphic metric mapping registration of reconstructed 3D histological section images and in vivo MR images

    Can Ceritoglu

    2010-05-01

    Full Text Available Our current understanding of neuroanatomical abnormalities in neuropsychiatric diseases is based largely on magnetic resonance imaging (MRI and post mortem histological analyses of the brain. Further advances in elucidating altered brain structure in these human conditions might emerge from combining MRI and histological methods. We propose a multistage method for registering 3D volumes reconstructed from histological sections to corresponding in vivo MRI volumes from the same subjects: (1 manual segmentation of white matter (WM, gray matter (GM and cerebrospinal fluid (CSF compartments in histological sections, (2 alignment of consecutive histological sections using 2D rigid transformation to construct a 3D histological image volume from the aligned sections, (3 registration of reconstructed 3D histological volumes to the corresponding 3D MRI volumes using 3D affine transformation, (4 intensity normalization of images via histogram matching and (5 registration of the volumes via intensity based Large Deformation Diffeomorphic Metric (LDDMM image matching algorithm. Here we demonstrate the utility of our method in the transfer of cytoarchitectonic information from histological sections to identify regions of interest in MRI scans of nine adult macaque brains for morphometric analyses. LDDMM improved the accuracy of the registration via decreased distances between GM/CSF surfaces after LDDMM (0.39±0.13 mm compared to distances after affine registration (0.76±0.41 mm. Similarly, WM/GM distances decreased to 0.28±0.16 mm after LDDMM compared to 0.54±0.39 mm after affine registration. The multistage registration method may find broad application for mapping histologically based information, e.g., receptor distributions, gene expression, onto MRI volumes.

  11. a Line-Based 3d Roof Model Reconstruction Algorithm: Tin-Merging and Reshaping (tmr)

    Rau, J.-Y.

    2012-07-01

    Three-dimensional building model is one of the major components of a cyber-city and is vital for the realization of 3D GIS applications. In the last decade, the airborne laser scanning (ALS) data is widely used for 3D building model reconstruction and object extraction. Instead, based on 3D roof structural lines, this paper presents a novel algorithm for automatic roof models reconstruction. A line-based roof model reconstruction algorithm, called TIN-Merging and Reshaping (TMR), is proposed. The roof structural line, such as edges, eaves and ridges, can be measured manually from aerial stereo-pair, derived by feature line matching or inferred from ALS data. The originality of the TMR algorithm for 3D roof modelling is to perform geometric analysis and topology reconstruction among those unstructured lines and then reshapes the roof-type using elevation information from the 3D structural lines. For topology reconstruction, a line constrained Delaunay Triangulation algorithm is adopted where the input structural lines act as constraint and their vertex act as input points. Thus, the constructed TINs will not across the structural lines. Later at the stage of Merging, the shared edge between two TINs will be check if the original structural line exists. If not, those two TINs will be merged into a polygon. Iterative checking and merging of any two neighboured TINs/Polygons will result in roof polygons on the horizontal plane. Finally, at the Reshaping stage any two structural lines with fixed height will be used to adjust a planar function for the whole roof polygon. In case ALS data exist, the Reshaping stage can be simplified by adjusting the point cloud within the roof polygon. The proposed scheme reduces the complexity of 3D roof modelling and makes the modelling process easier. Five test datasets provided by ISPRS WG III/4 located at downtown Toronto, Canada and Vaihingen, Germany are used for experiment. The test sites cover high rise buildings and residential

  12. 3D Printing of Molecular Potential Energy Surface Models

    Lolur, Phalgun; Dawes, Richard

    2014-01-01

    Additive manufacturing, commonly known as 3D printing, is gaining popularity in a variety of applications and has recently become routinely available. Today, 3D printing services are not only found in engineering design labs and through online companies, but also in university libraries offering student access. In addition, affordable options for…

  13. Steady needle growth with 3-D anisotropic surface tension

    Xiao-jun CHEN; Yong-qiang CHEN; Jian-pu XU; Jian-jun XU

    2008-01-01

    The effect of the anisotropic interracial en-ergy on dendritic growth has been an important sub-ject, and has preoccupied many researchers in the field of materials science and condensed matter physics. The present paper is dedicated to the study of the effect of full 3-D anisotropic Surface tension on the steady state solution of dendritic growth. We obtain the analytical form of the first order approximation solution in the reg-ular asymptotic expansion around the Ivantsov's nee-dle growth solution, which extends the steady needle growth solution of the system with isotropic surface ten-sion obtained by Xu and Yu (J. J. Xu and D. S. Yu, J. Cryst. Growth, 1998, 187: 314; J. J. Xu, Interfa-cial Wave Theory of Pattern Formation: Selection of Dendrite Growth and Viscous Fingering in a Hele-Shaw Flow, Berlin: Springer-Verlag, 1997).The solution is expanded in the general Laguerre se-ries in any finite region around the needle-tip, and it is also expanded in a power series in the far field behind the tip. Both solutions are then numerically matched in the intermediate region. Based on this global valid solution, the dependence of Peclet number Pe and the interface's morphology on the anisotropy parameter of surface ten-sion as well as other physical parameters involved are determined. On the basis of this global valid solution, we explore the effect of the anisotropy parameter on the Peclet number of growth, as well as the morphology of the interface.

  14. Implementation of a fast running full core pin power reconstruction method in DYN3D

    Gomez-Torres, Armando Miguel [Instituto Nacional de Investigaciones Nucleares, Department of Nuclear Systems, Carretera Mexico – Toluca s/n, La Marquesa, 52750 Ocoyoacac (Mexico); Sanchez-Espinoza, Victor Hugo, E-mail: victor.sanchez@kit.edu [Karlsruhe Institute of Technology, Institute for Neutron Physics and Reactor Technology, Hermann-vom-Helmhotz-Platz 1, D-76344 Eggenstein-Leopoldshafen (Germany); Kliem, Sören; Gommlich, Andre [Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden (Germany)

    2014-07-01

    Highlights: • New pin power reconstruction (PPR) method for the nodal diffusion code DYN3D. • Flexible PPR method applicable to a single, a group or to all fuel assemblies (square, hex). • Combination of nodal with pin-wise solutions (non-conform geometry). • PPR capabilities shown for REA of a Minicore (REA) PWR whole core. - Abstract: This paper presents a substantial extension of the pin power reconstruction (PPR) method used in the reactor dynamics code DYN3D with the aim to better describe the heterogeneity within the fuel assembly during reactor simulations. The flexibility of the new implemented PPR permits the local spatial refinement of one fuel assembly, of a cluster of fuel assemblies, of a quarter or eight of a core or even of a whole core. The application of PPR in core regions of interest will pave the way for the coupling with sub-channel codes enabling the prediction of local safety parameters. One of the main advantages of considering regions and not only a hot fuel assembly (FA) is the fact that the cross flow within this region can be taken into account by the subchannel code. The implementation of the new PPR method has been tested analysing a rod ejection accident (REA) in a PWR minicore consisting of 3 × 3 FA. Finally, the new capabilities of DNY3D are demonstrated by the analysing a boron dilution transient in a PWR MOX core and the pin power of a VVER-1000 reactor at stationary conditions.

  15. Urban archaeological investigations using surface 3D Ground Penetrating Radar and Electrical Resistivity Tomography methods

    Papadopoulos, Nikos; Sarris, Apostolos; Yi, Myeong-Jong; Kim, Jung-Ho

    2009-02-01

    Ongoing and extensive urbanisation, which is frequently accompanied with careless construction works, may threaten important archaeological structures that are still buried in the urban areas. Ground Penetrating Radar (GPR) and Electrical Resistivity Tomography (ERT) methods are most promising alternatives for resolving buried archaeological structures in urban territories. In this work, three case studies are presented, each of which involves an integrated geophysical survey employing the surface three-dimensional (3D) ERT and GPR techniques, in order to archaeologically characterise the investigated areas. The test field sites are located at the historical centres of two of the most populated cities of the island of Crete, in Greece. The ERT and GPR data were collected along a dense network of parallel profiles. The subsurface resistivity structure was reconstructed by processing the apparent resistivity data with a 3D inversion algorithm. The GPR sections were processed with a systematic way, applying specific filters to the data in order to enhance their information content. Finally, horizontal depth slices representing the 3D variation of the physical properties were created. The GPR and ERT images significantly contributed in reconstructing the complex subsurface properties in these urban areas. Strong GPR reflections and high-resistivity anomalies were correlated with possible archaeological structures. Subsequent excavations in specific places at both sites verified the geophysical results. The specific case studies demonstrated the applicability of ERT and GPR techniques during the design and construction stages of urban infrastructure works, indicating areas of archaeological significance and guiding archaeological excavations before construction work.

  16. SU-E-J-209: Verification of 3D Surface Registration Between Stereograms and CT Images

    Han, T; Gifford, K [UT MD Anderson Cancer Center, Houston, TX (United States); Smith, B [MD Anderson Cancer Center, Houston, TX (United States); Salehpour, M [M.D. Anderson Cancer Center, Houston, TX (United States)

    2014-06-01

    Purpose: Stereography can provide a visualization of the skin surface for radiation therapy patients. The aim of this study was to verify the registration algorithm in a commercial image analysis software, 3dMDVultus, for the fusion of stereograms and CT images. Methods: CT and stereographic scans were acquired of a head phantom and a deformable phantom. CT images were imported in 3dMDVultus and the surface contours were generated by threshold segmentation. Stereograms were reconstructed in 3dMDVultus. The resulting surfaces were registered with Vultus algorithm and then exported to in-house registration software and compared with four algorithms: rigid, affine, non-rigid iterative closest point (ICP) and b-spline algorithm. RMS (root-mean-square residuals of the surface point distances) error between the registered CT and stereogram surfaces was calculated and analyzed. Results: For the head phantom, the maximum RMS error between registered CT surfaces to stereogram was 6.6 mm for Vultus algorithm, whereas the mean RMS error was 0.7 mm. For the deformable phantom, the maximum RMS error was 16.2 mm for Vultus algorithm, whereas the mean RMS error was 4.4 mm. Non-rigid ICP demonstrated the best registration accuracy, as the mean of RMS errors were both within 1 mm. Conclusion: The accuracy of registration algorithm in 3dMDVultus was verified and exceeded RMS of 2 mm for deformable cases. Non-rigid ICP and b-spline algorithms improve the registration accuracy for both phantoms, especially in deformable one. For those patients whose body habitus deforms during radiation therapy, more advanced nonrigid algorithms need to be used.

  17. Surface modified alginate microcapsules for 3D cell culture

    Chen, Yi-Wen; Kuo, Chiung Wen; Chueh, Di-Yen; Chen, Peilin

    2016-06-01

    Culture as three dimensional cell aggregates or spheroids can offer an ideal platform for tissue engineering applications and for pharmaceutical screening. Such 3D culture models, however, may suffer from the problems such as immune response and ineffective and cumbersome culture. This paper describes a simple method for producing microcapsules with alginate cores and a thin shell of poly(L-lysine)-graft-poly(ethylene glycol) (PLL-g-PEG) to encapsulate mouse induced pluripotent stem (miPS) cells, generating a non-fouling surface as an effective immunoisolation barrier. We demonstrated the trapping of the alginate microcapsules in a microwell array for the continuous observation and culture of a large number of encapsulated miPS cells in parallel. miPS cells cultured in the microcapsules survived well and proliferated to form a single cell aggregate. Droplet formation of monodisperse microcapsules with controlled size combined with flow cytometry provided an efficient way to quantitatively analyze the growth of encapsulated cells in a high-throughput manner. The simple and cost-effective coating technique employed to produce the core-shell microcapsules could be used in the emerging field of cell therapy. The microwell array would provide a convenient, user friendly and high-throughput platform for long-term cell culture and monitoring.

  18. Computer-aided planning and reconstruction of cranial 3D implants.

    Gall, Markus; Xing Li; Xiaojun Chen; Schmalstieg, Dieter; Egger, Jan

    2016-08-01

    In this contribution, a prototype for semiautomatic computer-aided planning and reconstruction of cranial 3D Implants is presented. The software prototype guides the user through the workflow, beginning with loading and mirroring the patient's head to obtain an initial curvature of the cranial implant. However, naïve mirroring is not sufficient for an implant, because human heads are in general too asymmetric. Thus, the user can perform Laplacian smoothing, followed by Delaunay triangulation, for generating an aesthetic looking and well-fitting implant. Finally, our software prototype allows to save the designed 3D model of the implant as a STL-file for 3D printing. The 3D printed implant can be used for further pre-interventional planning or even as the final implant for the patient. In summary, our findings show that a customized MeVisLab prototype can be an alternative to complex commercial planning software, which may not be available in a clinic.

  19. Acceleration of EM-Based 3D CT Reconstruction Using FPGA.

    Choi, Young-Kyu; Cong, Jason

    2016-06-01

    Reducing radiation doses is one of the key concerns in computed tomography (CT) based 3D reconstruction. Although iterative methods such as the expectation maximization (EM) algorithm can be used to address this issue, applying this algorithm to practice is difficult due to the long execution time. Our goal is to decrease this long execution time to an order of a few minutes, so that low-dose 3D reconstruction can be performed even in time-critical events. In this paper we introduce a novel parallel scheme that takes advantage of numerous block RAMs on field-programmable gate arrays (FPGAs). Also, an external memory bandwidth reduction strategy is presented to reuse both the sinogram and the voxel intensity. Moreover, a customized processing engine based on the FPGA is presented to increase overall throughput while reducing the logic consumption. Finally, a hardware and software flow is proposed to quickly construct a design for various CT machines. The complete reconstruction system is implemented on an FPGA-based server-class node. Experiments on actual patient data show that a 26.9 × speedup can be achieved over a 16-thread multicore CPU implementation.

  20. 3D tracking the Brownian motion of colloidal particles using digital holographic microscopy and joint reconstruction

    Verrier, Nicolas; Fournel, Thierry

    2015-01-01

    In-line digital holography is a valuable tool for sizing, locating and tracking micro- or nano-objects in a volume. When a parametric imaging model is available, Inverse Problems approaches provide a straightforward estimate of the object parameters by fitting data with the model, thereby allowing accurate reconstruction. As recently proposed and demonstrated, combining pixel super-resolution techniques with Inverse Problems approaches improves the estimation of particle size and 3D-position. Here we demonstrate the accurate tracking of colloidal particles in Brownian motion. Particle size and 3D-position are jointly optimized from video holograms acquired with a digital holographic microscopy set up based on a "low-end" microscope objective ($\\times 20$, $\\rm NA\\ 0.5$). Exploiting information redundancy makes it possible to characterize particles with a standard deviation of 15 nm in size and a theoretical resolution of 2 x 2 x 5 nm$^3$ for position under additive white Gaussian noise assumption.

  1. Three-dimensional reconstruction of the guinea pig inner ear, comparison of OPFOS and light microscopy, applications of 3D reconstruction

    Hofman, R.; Segenhout, J. M.; Wit, H. P.

    2009-01-01

    Three-dimensional (3D) reconstruction of anatomical structures can give additional insight into the morphology and function of these structures. We compare 3D reconstructions of the guinea pig inner ear, using light microscopy and orthogonal plane fluorescence optical sectioning microscopy. Applicat

  2. Grammar-Supported 3d Indoor Reconstruction from Point Clouds for As-Built Bim

    Becker, S.; Peter, M.; Fritsch, D.

    2015-03-01

    The paper presents a grammar-based approach for the robust automatic reconstruction of 3D interiors from raw point clouds. The core of the approach is a 3D indoor grammar which is an extension of our previously published grammar concept for the modeling of 2D floor plans. The grammar allows for the modeling of buildings whose horizontal, continuous floors are traversed by hallways providing access to the rooms as it is the case for most office buildings or public buildings like schools, hospitals or hotels. The grammar is designed in such way that it can be embedded in an iterative automatic learning process providing a seamless transition from LOD3 to LOD4 building models. Starting from an initial low-level grammar, automatically derived from the window representations of an available LOD3 building model, hypotheses about indoor geometries can be generated. The hypothesized indoor geometries are checked against observation data - here 3D point clouds - collected in the interior of the building. The verified and accepted geometries form the basis for an automatic update of the initial grammar. By this, the knowledge content of the initial grammar is enriched, leading to a grammar with increased quality. This higher-level grammar can then be applied to predict realistic geometries to building parts where only sparse observation data are available. Thus, our approach allows for the robust generation of complete 3D indoor models whose quality can be improved continuously as soon as new observation data are fed into the grammar-based reconstruction process. The feasibility of our approach is demonstrated based on a real-world example.

  3. Visualization and 3D reconstruction of flame cells of Taenia solium (cestoda.

    Laura E Valverde-Islas

    Full Text Available BACKGROUND: Flame cells are the terminal cells of protonephridial systems, which are part of the excretory systems of invertebrates. Although the knowledge of their biological role is incomplete, there is a consensus that these cells perform excretion/secretion activities. It has been suggested that the flame cells participate in the maintenance of the osmotic environment that the cestodes require to live inside their hosts. In live Platyhelminthes, by light microscopy, the cells appear beating their flames rapidly and, at the ultrastructural, the cells have a large body enclosing a tuft of cilia. Few studies have been performed to define the localization of the cytoskeletal proteins of these cells, and it is unclear how these proteins are involved in cell function. METHODOLOGY/PRINCIPAL FINDINGS: Parasites of two different developmental stages of T. solium were used: cysticerci recovered from naturally infected pigs and intestinal adults obtained from immunosuppressed and experimentally infected golden hamsters. Hamsters were fed viable cysticerci to recover adult parasites after one month of infection. In the present studies focusing on flame cells of cysticerci tissues was performed. Using several methods such as video, confocal and electron microscopy, in addition to computational analysis for reconstruction and modeling, we have provided a 3D visual rendition of the cytoskeletal architecture of Taenia solium flame cells. CONCLUSIONS/SIGNIFICANCE: We consider that visual representations of cells open a new way for understanding the role of these cells in the excretory systems of Platyhelminths. After reconstruction, the observation of high resolution 3D images allowed for virtual observation of the interior composition of cells. A combination of microscopic images, computational reconstructions and 3D modeling of cells appears to be useful for inferring the cellular dynamics of the flame cell cytoskeleton.

  4. TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.

    Zhou, Zhi; Liu, Xiaoxiao; Long, Brian; Peng, Hanchuan

    2016-01-01

    Efficient and accurate digital reconstruction of neurons from large-scale 3D microscopic images remains a challenge in neuroscience. We propose a new automatic 3D neuron reconstruction algorithm, TReMAP, which utilizes 3D Virtual Finger (a reverse-mapping technique) to detect 3D neuron structures based on tracing results on 2D projection planes. Our fully automatic tracing strategy achieves close performance with the state-of-the-art neuron tracing algorithms, with the crucial advantage of efficient computation (much less memory consumption and parallel computation) for large-scale images.

  5. Fast 3D-EM reconstruction using Planograms for stationary planar positron emission mammography camera.

    Motta, A; Guerra, A Del; Belcari, N; Moehrs, S; Panetta, D; Righi, S; Valentini, D

    2005-12-01

    At the University of Pisa we are building a PEM prototype, the YAP-PEM camera, consisting of two opposite 6 x 6 x 3 cm3 detector heads of 30 x 30 YAP:Ce finger crystals, 2 x 2 x 30 mm3 each. The camera will be equipped with breast compressors. The acquisition will be stationary. Compared with a whole body PET scanner, a planar Positron Emission Mammography (PEM) camera allows a better, easier and more flexible positioning around the breast in the vicinity of the tumor: this increases the sensitivity and solid angle coverage, and reduces cost. To avoid software rejection of data during the reconstruction, resulting in a reduced sensitivity, we adopted a 3D-EM reconstruction which uses all of the collected Lines Of Response (LORs). This skips the PSF distortion given by data rebinning procedures and/or Fourier methods. The traditional 3D-EM reconstruction requires several times the computation of the LOR-voxel correlation matrix, or probability matrix {p(ij)}; therefore is highly time-consuming. We use the sparse and symmetry properties of the matrix {p(ij)} to perform fast 3D-EM reconstruction. Geometrically, a 3D grid of cubic voxels (FOV) is crossed by several divergent 3D line sets (LORs). The symmetries occur when tracing different LORs produces the same p(ij) value. Parallel LORs of different sets cross the FOV in the same way, and the repetition of p(ij) values depends on the ratio between the tube and voxel sizes. By optimizing this ratio, the occurrence of symmetries is increased. We identify a nucleus of symmetry of LORs: for each set of symmetrical LORs we choose just one LOR to be put in the nucleus, while the others lie outside. All of the possible p(ij) values are obtainable by tracking only the LORs of this nucleus. The coordinates of the voxels of all of the other LORs are given by means of simple translation rules. Before making the reconstruction, we trace the LORs of the nucleus to find the intersecting voxels, whose p(ij) values are computed and

  6. Human Body Modeling and Posture Simulating Based on 3D Surface Scan Data

    马永有; 张辉; 任少云; 蒋寿伟

    2003-01-01

    This paper presents a new approach for modeling the human body by considering the motion state and the shape of whole body. The body model consists of a skeleton kinematic model and a surface model. The former is used to determine the posture of the body,and the latter is used to generate the body shape according to the given posture. The body surface is reconstructed with multi-segment B-spline surfaces based on the 3D scan data from a real human body.Using only a few joints parameters and the original surface scan data, the various body postures and the shape can be generated easily. The model has a strong potential of being used for ergonomic design,garment design, virtual reality environment, as well as creating human animation, etc.

  7. Numerical modeling of 3-D Position Reconstruction from 3-Axial Planar Spiral Coil Sensor Sensitivity

    Sanjaya, Edi; Viridi, Sparisoma

    2011-01-01

    A sensitivity profile of a planar spiral coil sensor (PSCS) is proposed and use to generate the relation of 3-D position of object observed using three (PSCS)-s, one in each x, y, and z axis to the sensors response. A numerical procedure using self consistent field-like method to reconstruct the real position of observed object from sensor sensitivity is presented and the results are discussed. Unfortunately, the procedure fails to approach the desired results due to the existence of quadratic terms.

  8. 3D CAD model reconstruction of a human femur from MRI images

    Benaissa EL FAHIME

    2013-05-01

    Full Text Available Medical practice and life sciences take full advantage of progress in engineering disciplines, in particular the computer assisted placement technique in hip surgery. This paper describes the three dimensional model reconstruction of human femur from MRI images. The developed program enables to obtain digital shape of 3D femur recognized by all CAD software and allows an accurate placement of the femoral component. This technic provides precise measurement of implant alignment during hip resurfacing or total hip arthroplasty, thereby reducing the risk of component mal-positioning and femoral neck notching.

  9. Cell volume and geometric parameters determination in living cells using confocal microscopy and 3D reconstruction

    sprotocols

    2015-01-01

    Authors: David Hevia, Aida Rodriguez-Garcia, Marta Alonso-Gervós, Isabel Quirós-González, Henar M Cimadevilla, Carmen Gómez-Cordovés, Rosa M Sainz & Juan C Mayo ### Abstract The protocol reported here describes a simple, easy, fast and reproducible method aimed to know the geometric parameters of living cells based on confocal laser scanning microscopy combined with 3D reconstruction software. Briefly, the method is based on intrinsic fluorescence properties of acridine orange (AO...

  10. Molecular-Frame 3D Photoelectron Momentum Distributions by Tomographic Reconstruction

    Maurer, Jochen; Dimitrovski, Darko; Christensen, Lauge;

    2012-01-01

    Naphthalene molecules are fixed in space by a laser field and rotated, in 2° steps, over 180°. For each orientation, they are ionized by an intense, circularly polarized femtosecond laser pulse, and the 2D projection of the photoelectron momentum distribution is recorded. The molecular-frame 3D...... momentum distribution is obtained by tomographic reconstruction from all 90 projections. It reveals an anisotropic electron distribution, angularly shifted in the polarization plane, that is not accessible by the 2D momentum images. Our theoretical analysis shows that the magnitude of the angular shift...

  11. 3D reconstruction for partial data electrical impedance tomography using a sparsity prior

    Garde, Henrik; Knudsen, Kim

    2015-01-01

    In electrical impedance tomography the electrical conductivity inside a physical body is computed from electro-static boundary measurements. The focus of this paper is to extend recent results for the 2D problem to 3D: prior information about the sparsity and spatial distribution...... of the conductivity is used to improve reconstructions for the partial data problem with Cauchy data measured only on a subset of the boundary. A sparsity prior is enforced using the ℓ1 norm in the penalty term of a Tikhonov functional, and spatial prior information is incorporated by applying a spatially distributed...

  12. 2D and 3D reconstructions in acousto-electric tomography

    Kuchment, Peter

    2011-04-18

    We propose and test stable algorithms for the reconstruction of the internal conductivity of a biological object using acousto-electric measurements. Namely, the conventional impedance tomography scheme is supplemented by scanning the object with acoustic waves that slightly perturb the conductivity and cause the change in the electric potential measured on the boundary of the object. These perturbations of the potential are then used as the data for the reconstruction of the conductivity. The present method does not rely on \\'perfectly focused\\' acoustic beams. Instead, more realistic propagating spherical fronts are utilized, and then the measurements that would correspond to perfect focusing are synthesized. In other words, we use synthetic focusing. Numerical experiments with simulated data show that our techniques produce high-quality images, both in 2D and 3D, and that they remain accurate in the presence of high-level noise in the data. Local uniqueness and stability for the problem also hold. © 2011 IOP Publishing Ltd.

  13. Incremental Multi-view 3D Reconstruction Starting from Two Images Taken by a Stereo Pair of Cameras

    El hazzat, Soulaiman; Saaidi, Abderrahim; Karam, Antoine; Satori, Khalid

    2015-03-01

    In this paper, we present a new method for multi-view 3D reconstruction based on the use of a binocular stereo vision system constituted of two unattached cameras to initialize the reconstruction process. Afterwards , the second camera of stereo vision system (characterized by varying parameters) moves to capture more images at different times which are used to obtain an almost complete 3D reconstruction. The first two projection matrices are estimated by using a 3D pattern with known properties. After that, 3D scene points are recovered by triangulation of the matched interest points between these two images. The proposed approach is incremental. At each insertion of a new image, the camera projection matrix is estimated using the 3D information already calculated and new 3D points are recovered by triangulation from the result of the matching of interest points between the inserted image and the previous image. For the refinement of the new projection matrix and the new 3D points, a local bundle adjustment is performed. At first, all projection matrices are estimated, the matches between consecutive images are detected and Euclidean sparse 3D reconstruction is obtained. So, to increase the number of matches and have a more dense reconstruction, the Match propagation algorithm, more suitable for interesting movement of the camera, was applied on the pairs of consecutive images. The experimental results show the power and robustness of the proposed approach.

  14. 3D RECONSTRUCTION FROM MULTI-VIEW MEDICAL X-RAY IMAGES – REVIEW AND EVALUATION OF EXISTING METHODS

    S. Hosseinian

    2015-12-01

    Full Text Available The 3D concept is extremely important in clinical studies of human body. Accurate 3D models of bony structures are currently required in clinical routine for diagnosis, patient follow-up, surgical planning, computer assisted surgery and biomechanical applications. However, 3D conventional medical imaging techniques such as computed tomography (CT scan and magnetic resonance imaging (MRI have serious limitations such as using in non-weight-bearing positions, costs and high radiation dose(for CT. Therefore, 3D reconstruction methods from biplanar X-ray images have been taken into consideration as reliable alternative methods in order to achieve accurate 3D models with low dose radiation in weight-bearing positions. Different methods have been offered for 3D reconstruction from X-ray images using photogrammetry which should be assessed. In this paper, after demonstrating the principles of 3D reconstruction from X-ray images, different existing methods of 3D reconstruction of bony structures from radiographs are classified and evaluated with various metrics and their advantages and disadvantages are mentioned. Finally, a comparison has been done on the presented methods with respect to several metrics such as accuracy, reconstruction time and their applications. With regards to the research, each method has several advantages and disadvantages which should be considered for a specific application.

  15. GPS tomography: validation of reconstructed 3-D humidity fields with radiosonde profiles

    M. Shangguan

    2013-09-01

    Full Text Available Water vapor plays an important role in meteorological applications; GeoForschungsZentrum (GFZ therefore developed a tomographic system to derive 3-D distributions of the tropospheric water vapor above Germany using GPS data from about 300 ground stations. Input data for the tomographic reconstructions are generated by the Earth Parameter and Orbit determination System (EPOS software of the GFZ, which provides zenith total delay (ZTD, integrated water vapor (IWV and slant total delay (STD data operationally with a temporal resolution of 2.5 min (STD and 15 min (ZTD, IWV. The water vapor distribution in the atmosphere is derived by tomographic reconstruction techniques. The quality of the solution is dependent on many factors such as the spatial coverage of the atmosphere with slant paths, the spatial distribution of their intersections and the accuracy of the input observations. Independent observations are required to validate the tomographic reconstructions and to get precise information on the accuracy of the derived 3-D water vapor fields. To determine the quality of the GPS tomography, more than 8000 vertical water vapor profiles at 13 German radiosonde stations were used for the comparison. The radiosondes were launched twice a day (at 00:00 UTC and 12:00 UTC in 2007. In this paper, parameters of the entire profiles such as the wet refractivity, and the zenith wet delay have been compared. Before the validation the temporal and spatial distribution of the slant paths, serving as a basis for tomographic reconstruction, as well as their angular distribution were studied. The mean wet refractivity differences between tomography and radiosonde data for all points vary from −1.3 to 0.3, and the root mean square is within the range of 6.5–9. About 32% of 6803 profiles match well, 23% match badly and 45% are difficult to classify as they match only in parts.

  16. Linear stratified approach using full geometric constraints for 3D scene reconstruction and camera calibration.

    Kim, Jae-Hean; Koo, Bon-Ki

    2013-02-25

    This paper presents a new linear framework to obtain 3D scene reconstruction and camera calibration simultaneously from uncalibrated images using scene geometry. Our strategy uses the constraints of parallelism, coplanarity, colinearity, and orthogonality. These constraints can be obtained in general man-made scenes frequently. This approach can give more stable results with fewer images and allow us to gain the results with only linear operations. In this paper, it is shown that all the geometric constraints used in the previous works performed independently up to now can be implemented easily in the proposed linear method. The study on the situations that cannot be dealt with by the previous approaches is also presented and it is shown that the proposed method being able to handle the cases is more flexible in use. The proposed method uses a stratified approach, in which affine reconstruction is performed first and then metric reconstruction. In this procedure, the additional constraints newly extracted in this paper have an important role for affine reconstruction in practical situations.

  17. Towards the reconstruction of 3D orientation information from direction-sensitive X-ray projections

    Malecki, Andreas; Biernath, Thomas; Bech, Martin; Potdevin, Guillaume; Pfeiffer, Franz [Technische Univ. Muenchen (Germany). Dept. of Physics (E17); Technische Univ. Muenchen (Germany). Inst. of Medical Engineering (IMETUM); Lasser, Tobias [Technische Univ. Muenchen (Germany). Chair for Computer Aided Medical Procedures and Augmented Reality (CAMP)

    2011-07-01

    For medical in vivo applications the resolution of a computed tomography (CT) scan is limited by the acceptable patient received dose. Thus it does not allow to image microstructures in the body. Novel X-ray contrast mechanisms provide two additional signal channels, phase contrast and dark-field contrast. In this study we report on our progress to use the dark-field signal to gain micro-structural information by reconstructing a tensor field describing the local sample scattering power. For that purpose we developed an experimental setup composed of an X-ray tube, a Talbot Lau interferometer, an Euler cradle to orient the sample and a detector. This setup allows a direct measurement of the sample scattering strength in all directions. The reconstruction of several test samples is done using filtered back-projection or the algebraic reconstruction technique. The definition of the physical model behind the reconstructed quantity is obtained from a second ansatz by using 3D density map (micro-CT) data as an input to a computer simulation of the whole setup. We consider this project important for diagnostic improvements in the case of bone pathologies. (orig.)

  18. The born approximation and Calderón's method for reconstruction of conductivities in 3-D

    Knudsen, Kim; Mueller, Jennifer L.

    2011-01-01

    Two algorithms for the direct reconstruction of conductivities in a bounded domain in [\\mathbb{R}^3] from surface measurements of the solutions to the conductivity equation are presented. The algorithms are based on complex geometrical optics solutions and a nonlinear scattering transform. We test...... the algorithms on three numerically simulated examples, including an example with a complex coefficient. The spatial resolution and amplitude of the examples are well-reconstructed....

  19. Reconstructing 3D coastal cliffs from airborne oblique photographs without ground control points

    Dewez, T. J. B.

    2014-05-01

    Coastal cliff collapse hazard assessment requires measuring cliff face topography at regular intervals. Terrestrial laser scanner techniques have proven useful so far but are expensive to use either through purchasing the equipment or through survey subcontracting. In addition, terrestrial laser surveys take time which is sometimes incompatible with the time during with the beach is accessible at low-tide. By comparison, structure from motion techniques (SFM) are much less costly to implement, and if airborne, acquisition of several kilometers of coastline can be done in a matter of minutes. In this paper, the potential of GPS-tagged oblique airborne photographs and SFM techniques is examined to reconstruct chalk cliff dense 3D point clouds without Ground Control Points (GCP). The focus is put on comparing the relative 3D point of views reconstructed by Visual SFM with their synchronous Solmeta Geotagger Pro2 GPS locations using robust estimators. With a set of 568 oblique photos, shot from the open door of an airplane with a triplet of synchronized Nikon D7000, GPS and SFM-determined view point coordinates converge to X: ±31.5 m; Y: ±39.7 m; Z: ±13.0 m (LE66). Uncertainty in GPS position affects the model scale, angular attitude of the reference frame (the shoreline ends up tilted by 2°) and absolute positioning. Ground Control Points cannot be avoided to orient such models.

  20. Hybrid Parallel Bundle Adjustment for 3D Scene Reconstruction with Massive Points

    Xin Liu; Wei Gao; Zhan-Yi Hu

    2012-01-01

    Bundle adjustment (BA) is a crucial but time consuming step in 3D reconstruction.In this paper,we intend to tackle a special class of BA problems where the reconstructed 3D points are much more numerous than the camera parameters,called Massive-Points BA (MPBA) problems.This is often the case when high-resolution images are used.We present a design and implementation of a new bundle adjustment algorithm for efficiently solving the MPBA problems.The use of hardware parallelism,the multi-core CPUs as well as GPUs,is explored.By careful memory-usage design,the graphic-memory limitation is effectively alleviated.Several modern acceleration strategies for bundle adjustment,such as the mixed-precision arithmetics,the embedded point iteration,and the preconditioned conjugate gradients,are explored and compared.By using several high-resolution image datasets,we generate a variety of MPBA problems,with which the performance of five bundle adjustment algorithms are evaluated.The experimental results show that our algorithm is up to 40 times faster than classical Sparse Bundle Adjustment,while maintaining comparable precision.

  1. Skeletal camera network embedded structure-from-motion for 3D scene reconstruction from UAV images

    Xu, Zhihua; Wu, Lixin; Gerke, Markus; Wang, Ran; Yang, Huachao

    2016-11-01

    Structure-from-Motion (SfM) techniques have been widely used for 3D scene reconstruction from multi-view images. However, due to the large computational costs of SfM methods there is a major challenge in processing highly overlapping images, e.g. images from unmanned aerial vehicles (UAV). This paper embeds a novel skeletal camera network (SCN) into SfM to enable efficient 3D scene reconstruction from a large set of UAV images. First, the flight control data are used within a weighted graph to construct a topologically connected camera network (TCN) to determine the spatial connections between UAV images. Second, the TCN is refined using a novel hierarchical degree bounded maximum spanning tree to generate a SCN, which contains a subset of edges from the TCN and ensures that each image is involved in at least a 3-view configuration. Third, the SCN is embedded into the SfM to produce a novel SCN-SfM method, which allows performing tie-point matching only for the actually connected image pairs. The proposed method was applied in three experiments with images from two fixed-wing UAVs and an octocopter UAV, respectively. In addition, the SCN-SfM method was compared to three other methods for image connectivity determination. The comparison shows a significant reduction in the number of matched images if our method is used, which leads to less computational costs. At the same time the achieved scene completeness and geometric accuracy are comparable.

  2. Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data.

    Trieu, Tuan; Cheng, Jianlin

    2014-04-01

    Chromosomes are not positioned randomly within a nucleus, but instead, they adopt preferred spatial conformations to facilitate necessary long-range gene-gene interactions and regulations. Thus, obtaining the 3D shape of chromosomes of a genome is critical for understanding how the genome folds, functions and how its genes interact and are regulated. Here, we describe a method to reconstruct preferred 3D structures of individual chromosomes of the human genome from chromosomal contact data generated by the Hi-C chromosome conformation capturing technique. A novel parameterized objective function was designed for modeling chromosome structures, which was optimized by a gradient descent method to generate chromosomal structural models that could satisfy as many intra-chromosomal contacts as possible. We applied the objective function and the corresponding optimization method to two Hi-C chromosomal data sets of both a healthy and a cancerous human B-cell to construct 3D models of individual chromosomes at resolutions of 1 MB and 200 KB, respectively. The parameters used with the method were calibrated according to an independent fluorescence in situ hybridization experimental data. The structural models generated by our method could satisfy a high percentage of contacts (pairs of loci in interaction) and non-contacts (pairs of loci not in interaction) and were compatible with the known two-compartment organization of human chromatin structures. Furthermore, structural models generated at different resolutions and from randomly permuted data sets were consistent.

  3. 3D endobronchial ultrasound reconstruction and analysis for multimodal image-guided bronchoscopy

    Zang, Xiaonan; Bascom, Rebecca; Gilbert, Christopher R.; Toth, Jennifer W.; Higgins, William E.

    2014-03-01

    State-of-the-art image-guided intervention (IGI) systems for lung-cancer management draw upon high-resolution three-dimensional multi-detector computed-tomography (MDCT) images and bronchoscopic video. An MDCT scan provides a high-resolution three-dimensional (3D) image of the chest that is used for preoperative procedure planning, while bronchoscopy gives live intraoperative video of the endobronchial airway tree structure. However, because neither source provides live extraluminal information on suspect nodules or lymph nodes, endobronchial ultrasound (EBUS) is often introduced during a procedure. Unfortunately, existing IGI systems provide no direct synergistic linkage between the MDCT/video data and EBUS data. Hence, EBUS proves difficult to use and can lead to inaccurate interpretations. To address this drawback, we present a prototype of a multimodal IGI system that brings together the various image sources. The system enables 3D reconstruction and visualization of structures depicted in the 2D EBUS video stream. It also provides a set of graphical tools that link the EBUS data directly to the 3D MDCT and bronchoscopic video. Results using phantom and human data indicate that the new system could potentially enable smooth natural incorporation of EBUS into the system-level work flow of bronchoscopy.

  4. On the 3-D reconstruction of Coronal Mass Ejections using coronagraph data

    M. Mierla

    2010-01-01

    Full Text Available Coronal Mass ejections (CMEs are enormous eruptions of magnetized plasma expelled from the Sun into the interplanetary space, over the course of hours to days. They can create major disturbances in the interplanetary medium and trigger severe magnetic storms when they collide with the Earth's magnetosphere. It is important to know their real speed, propagation direction and 3-D configuration in order to accurately predict their arrival time at the Earth. Using data from the SECCHI coronagraphs onboard the STEREO mission, which was launched in October 2006, we can infer the propagation direction and the 3-D structure of such events. In this review, we first describe different techniques that were used to model the 3-D configuration of CMEs in the coronagraph field of view (up to 15 R⊙. Then, we apply these techniques to different CMEs observed by various coronagraphs. A comparison of results obtained from the application of different reconstruction algorithms is presented and discussed.

  5. AN IMAGE-BASED TECHNIQUE FOR 3D BUILDING RECONSTRUCTION USING MULTI-VIEW UAV IMAGES

    F. Alidoost

    2015-12-01

    Full Text Available Nowadays, with the development of the urban areas, the automatic reconstruction of the buildings, as an important objects of the city complex structures, became a challenging topic in computer vision and photogrammetric researches. In this paper, the capability of multi-view Unmanned Aerial Vehicles (UAVs images is examined to provide a 3D model of complex building façades using an efficient image-based modelling workflow. The main steps of this work include: pose estimation, point cloud generation, and 3D modelling. After improving the initial values of interior and exterior parameters at first step, an efficient image matching technique such as Semi Global Matching (SGM is applied on UAV images and a dense point cloud is generated. Then, a mesh model of points is calculated using Delaunay 2.5D triangulation and refined to obtain an accurate model of building. Finally, a texture is assigned to mesh in order to create a realistic 3D model. The resulting model has provided enough details of building based on visual assessment.

  6. Motion and positional error correction for cone beam 3D-reconstruction with mobile C-arms.

    Bodensteiner, C; Darolti, C; Schumacher, H; Matthäus, L; Schweikard, A

    2007-01-01

    CT-images acquired by mobile C-arm devices can contain artefacts caused by positioning errors. We propose a data driven method based on iterative 3D-reconstruction and 2D/3D-registration to correct projection data inconsistencies. With a 2D/3D-registration algorithm, transformations are computed to align the acquired projection images to a previously reconstructed volume. In an iterative procedure, the reconstruction algorithm uses the results of the registration step. This algorithm also reduces small motion artefacts within 3D-reconstructions. Experiments with simulated projections from real patient data show the feasibility of the proposed method. In addition, experiments with real projection data acquired with an experimental robotised C-arm device have been performed with promising results.

  7. Structured Light Based 3d Scanning for Specular Surface by the Combination of Gray Code and Phase Shifting

    Zhang, Yujia; Yilmaz, Alper

    2016-06-01

    Surface reconstruction using coded structured light is considered one of the most reliable techniques for high-quality 3D scanning. With a calibrated projector-camera stereo system, a light pattern is projected onto the scene and imaged by the camera. Correspondences between projected and recovered patterns are computed in the decoding process, which is used to generate 3D point cloud of the surface. However, the indirect illumination effects on the surface, such as subsurface scattering and interreflections, will raise the difficulties in reconstruction. In this paper, we apply maximum min-SW gray code to reduce the indirect illumination effects of the specular surface. We also analysis the errors when comparing the maximum min-SW gray code and the conventional gray code, which justifies that the maximum min-SW gray code has significant superiority to reduce the indirect illumination effects. To achieve sub-pixel accuracy, we project high frequency sinusoidal patterns onto the scene simultaneously. But for specular surface, the high frequency patterns are susceptible to decoding errors. Incorrect decoding of high frequency patterns will result in a loss of depth resolution. Our method to resolve this problem is combining the low frequency maximum min-SW gray code and the high frequency phase shifting code, which achieves dense 3D reconstruction for specular surface. Our contributions include: (i) A complete setup of the structured light based 3D scanning system; (ii) A novel combination technique of the maximum min-SW gray code and phase shifting code. First, phase shifting decoding with sub-pixel accuracy. Then, the maximum min-SW gray code is used to resolve the ambiguity resolution. According to the experimental results and data analysis, our structured light based 3D scanning system enables high quality dense reconstruction of scenes with a small number of images. Qualitative and quantitative comparisons are performed to extract the advantages of our new

  8. Estimation of shape model parameters for 3D surfaces

    Erbou, Søren Gylling Hemmingsen; Darkner, Sune; Fripp, Jurgen;

    2008-01-01

    Statistical shape models are widely used as a compact way of representing shape variation. Fitting a shape model to unseen data enables characterizing the data in terms of the model parameters. In this paper a Gauss-Newton optimization scheme is proposed to estimate shape model parameters of 3D s...

  9. A generative statistical approach to automatic 3D building roof reconstruction from laser scanning data

    Huang, Hai; Brenner, Claus; Sester, Monika

    2013-05-01

    This paper presents a generative statistical approach to automatic 3D building roof reconstruction from airborne laser scanning point clouds. In previous works, bottom-up methods, e.g., points clustering, plane detection, and contour extraction, are widely used. Due to the data artefacts caused by tree clutter, reflection from windows, water features, etc., the bottom-up reconstruction in urban areas may suffer from a number of incomplete or irregular roof parts. Manually given geometric constraints are usually needed to ensure plausible results. In this work we propose an automatic process with emphasis on top-down approaches. The input point cloud is firstly pre-segmented into subzones containing a limited number of buildings to reduce the computational complexity for large urban scenes. For the building extraction and reconstruction in the subzones we propose a pure top-down statistical scheme, in which the bottom-up efforts or additional data like building footprints are no more required. Based on a predefined primitive library we conduct a generative modeling to reconstruct roof models that fit the data. Primitives are assembled into an entire roof with given rules of combination and merging. Overlaps of primitives are allowed in the assembly. The selection of roof primitives, as well as the sampling of their parameters, is driven by a variant of Markov Chain Monte Carlo technique with specified jump mechanism. Experiments are performed on data-sets of different building types (from simple houses, high-rise buildings to combined building groups) and resolutions. The results show robustness despite the data artefacts mentioned above and plausibility in reconstruction.

  10. Single-Particle Cryo-EM and 3D Reconstruction of Hybrid Nanoparticles with Electron-Dense Components.

    Yu, Guimei; Yan, Rui; Zhang, Chuan; Mao, Chengde; Jiang, Wen

    2015-10-01

    Single-particle cryo-electron microscopy (cryo-EM), accompanied with 3D reconstruction, is a broadly applicable tool for the structural characterization of macromolecules and nanoparticles. Recently, the cryo-EM field has pushed the limits of this technique to higher resolutions and samples of smaller molecular mass, however, some samples still present hurdles to this technique. Hybrid particles with electron-dense components, which have been studied using single-particle cryo-EM yet with limited success in 3D reconstruction due to the interference caused by electron-dense elements, constitute one group of such challenging samples. To process such hybrid particles, a masking method is developed in this work to adaptively remove pixels arising from electron-dense portions in individual projection images while maintaining maximal biomass signals for subsequent 2D alignment, 3D reconstruction, and iterative refinements. As demonstrated by the success in 3D reconstruction of an octahedron DNA/gold hybrid particle, which has been previously published without a 3D reconstruction, the devised strategy that combines adaptive masking and standard single-particle 3D reconstruction approach has overcome the hurdle of electron-dense elements interference, and is generally applicable to cryo-EM structural characterization of most, if not all, hybrid nanomaterials with electron-dense components.

  11. Putting 3D modelling and 3D printing into practice: virtual surgery and preoperative planning to reconstruct complex post-traumatic skeletal deformities and defects

    Tetsworth Kevin

    2017-01-01

    Full Text Available 3D printing technology has revolutionized and gradually transformed manufacturing across a broad spectrum of industries, including healthcare. Nowhere is this more apparent than in orthopaedics with many surgeons already incorporating aspects of 3D modelling and virtual procedures into their routine clinical practice. As a more extreme application, patient-specific 3D printed titanium truss cages represent a novel approach for managing the challenge of segmental bone defects. This review illustrates the potential indications of this innovative technique using 3D printed titanium truss cages in conjunction with the Masquelet technique. These implants are custom designed during a virtual surgical planning session with the combined input of an orthopaedic surgeon, an orthopaedic engineering professional and a biomedical design engineer. The ability to 3D model an identical replica of the original intact bone in a virtual procedure is of vital importance when attempting to precisely reconstruct normal anatomy during the actual procedure. Additionally, other important factors must be considered during the planning procedure, such as the three-dimensional configuration of the implant. Meticulous design is necessary to allow for successful implantation through the planned surgical exposure, while being aware of the constraints imposed by local anatomy and prior implants. This review will attempt to synthesize the current state of the art as well as discuss our personal experience using this promising technique. It will address implant design considerations including the mechanical, anatomical and functional aspects unique to each case.

  12. Putting 3D modelling and 3D printing into practice: virtual surgery and preoperative planning to reconstruct complex post-traumatic skeletal deformities and defects.

    Tetsworth, Kevin; Block, Steve; Glatt, Vaida

    2017-01-01

    3D printing technology has revolutionized and gradually transformed manufacturing across a broad spectrum of industries, including healthcare. Nowhere is this more apparent than in orthopaedics with many surgeons already incorporating aspects of 3D modelling and virtual procedures into their routine clinical practice. As a more extreme application, patient-specific 3D printed titanium truss cages represent a novel approach for managing the challenge of segmental bone defects. This review illustrates the potential indications of this innovative technique using 3D printed titanium truss cages in conjunction with the Masquelet technique. These implants are custom designed during a virtual surgical planning session with the combined input of an orthopaedic surgeon, an orthopaedic engineering professional and a biomedical design engineer. The ability to 3D model an identical replica of the original intact bone in a virtual procedure is of vital importance when attempting to precisely reconstruct normal anatomy during the actual procedure. Additionally, other important factors must be considered during the planning procedure, such as the three-dimensional configuration of the implant. Meticulous design is necessary to allow for successful implantation through the planned surgical exposure, while being aware of the constraints imposed by local anatomy and prior implants. This review will attempt to synthesize the current state of the art as well as discuss our personal experience using this promising technique. It will address implant design considerations including the mechanical, anatomical and functional aspects unique to each case.

  13. Putting 3D modelling and 3D printing into practice: virtual surgery and preoperative planning to reconstruct complex post-traumatic skeletal deformities and defects

    Tetsworth, Kevin; Block, Steve; Glatt, Vaida

    2017-01-01

    3D printing technology has revolutionized and gradually transformed manufacturing across a broad spectrum of industries, including healthcare. Nowhere is this more apparent than in orthopaedics with many surgeons already incorporating aspects of 3D modelling and virtual procedures into their routine clinical practice. As a more extreme application, patient-specific 3D printed titanium truss cages represent a novel approach for managing the challenge of segmental bone defects. This review illustrates the potential indications of this innovative technique using 3D printed titanium truss cages in conjunction with the Masquelet technique. These implants are custom designed during a virtual surgical planning session with the combined input of an orthopaedic surgeon, an orthopaedic engineering professional and a biomedical design engineer. The ability to 3D model an identical replica of the original intact bone in a virtual procedure is of vital importance when attempting to precisely reconstruct normal anatomy during the actual procedure. Additionally, other important factors must be considered during the planning procedure, such as the three-dimensional configuration of the implant. Meticulous design is necessary to allow for successful implantation through the planned surgical exposure, while being aware of the constraints imposed by local anatomy and prior implants. This review will attempt to synthesize the current state of the art as well as discuss our personal experience using this promising technique. It will address implant design considerations including the mechanical, anatomical and functional aspects unique to each case. PMID:28220752

  14. 3D reconstruction and analysis of wing deformation in free-flying dragonflies.

    Koehler, Christopher; Liang, Zongxian; Gaston, Zachary; Wan, Hui; Dong, Haibo

    2012-09-01

    Insect wings demonstrate elaborate three-dimensional deformations and kinematics. These deformations are key to understanding many aspects of insect flight including aerodynamics, structural dynamics and control. In this paper, we propose a template-based subdivision surface reconstruction method that is capable of reconstructing the wing deformations and kinematics of free-flying insects based on the output of a high-speed camera system. The reconstruction method makes no rigid wing assumptions and allows for an arbitrary arrangement of marker points on the interior and edges of each wing. The resulting wing surfaces are projected back into image space and compared with expert segmentations to validate reconstruction accuracy. A least squares plane is then proposed as a universal reference to aid in making repeatable measurements of the reconstructed wing deformations. Using an Eastern pondhawk (Erythimus simplicicollis) dragonfly for demonstration, we quantify and visualize the wing twist and camber in both the chord-wise and span-wise directions, and discuss the implications of the results. In particular, a detailed analysis of the subtle deformation in the dragonfly's right hindwing suggests that the muscles near the wing root could be used to induce chord-wise camber in the portion of the wing nearest the specimen's body. We conclude by proposing a novel technique for modeling wing corrugation in the reconstructed flapping wings. In this method, displacement mapping is used to combine wing surface details measured from static wings with the reconstructed flapping wings, while not requiring any additional information be tracked in the high speed camera output.

  15. Rapid 3D dynamic arterial spin labeling with a sparse model-based image reconstruction.

    Zhao, Li; Fielden, Samuel W; Feng, Xue; Wintermark, Max; Mugler, John P; Meyer, Craig H

    2015-11-01

    Dynamic arterial spin labeling (ASL) MRI measures the perfusion bolus at multiple observation times and yields accurate estimates of cerebral blood flow in the presence of variations in arterial transit time. ASL has intrinsically low signal-to-noise ratio (SNR) and is sensitive to motion, so that extensive signal averaging is typically required, leading to long scan times for dynamic ASL. The goal of this study was to develop an accelerated dynamic ASL method with improved SNR and robustness to motion using a model-based image reconstruction that exploits the inherent sparsity of dynamic ASL data. The first component of this method is a single-shot 3D turbo spin echo spiral pulse sequence accelerated using a combination of parallel imaging and compressed sensing. This pulse sequence was then incorporated into a dynamic pseudo continuous ASL acquisition acquired at multiple observation times, and the resulting images were jointly reconstructed enforcing a model of potential perfusion time courses. Performance of the technique was verified using a numerical phantom and it was validated on normal volunteers on a 3-Tesla scanner. In simulation, a spatial sparsity constraint improved SNR and reduced estimation errors. Combined with a model-based sparsity constraint, the proposed method further improved SNR, reduced estimation error and suppressed motion artifacts. Experimentally, the proposed method resulted in significant improvements, with scan times as short as 20s per time point. These results suggest that the model-based image reconstruction enables rapid dynamic ASL with improved accuracy and robustness.

  16. The Performance Evaluation of Multi-Image 3d Reconstruction Software with Different Sensors

    Mousavi, V.; Khosravi, M.; Ahmadi, M.; Noori, N.; Naveh, A. Hosseini; Varshosaz, M.

    2015-12-01

    Today, multi-image 3D reconstruction is an active research field and generating three dimensional model of the objects is one the most discussed issues in Photogrammetry and Computer Vision that can be accomplished using range-based or image-based methods. Very accurate and dense point clouds generated by range-based methods such as structured light systems and laser scanners has introduced them as reliable tools in the industry. Image-based 3D digitization methodologies offer the option of reconstructing an object by a set of unordered images that depict it from different viewpoints. As their hardware requirements are narrowed down to a digital camera and a computer system, they compose an attractive 3D digitization approach, consequently, although range-based methods are generally very accurate, image-based methods are low-cost and can be easily used by non-professional users. One of the factors affecting the accuracy of the obtained model in image-based methods is the software and algorithm used to generate three dimensional model. These algorithms are provided in the form of commercial software, open source and web-based services. Another important factor in the accuracy of the obtained model is the type of sensor used. Due to availability of mobile sensors to the public, popularity of professional sensors and the advent of stereo sensors, a comparison of these three sensors plays an effective role in evaluating and finding the optimized method to generate three-dimensional models. Lots of research has been accomplished to identify a suitable software and algorithm to achieve an accurate and complete model, however little attention is paid to the type of sensors used and its effects on the quality of the final model. The purpose of this paper is deliberation and the introduction of an appropriate combination of a sensor and software to provide a complete model with the highest accuracy. To do this, different software, used in previous studies, were compared and

  17. Three-Phase 3D Reconstruction of a LiCoO2 Cathode via FIB-SEM Tomography.

    Liu, Zhao; Chen-Wiegart, Yu-Chen K; Wang, Jun; Barnett, Scott A; Faber, Katherine T

    2016-02-01

    Three-phase three-dimensional (3D) microstructural reconstructions of lithium-ion battery electrodes are critical input for 3D simulations of electrode lithiation/delithiation, which provide a detailed understanding of battery operation. In this report, 3D images of a LiCoO2 electrode are achieved using focused ion beam-scanning electron microscopy (FIB-SEM), with clear contrast among the three phases: LiCoO2 particles, carbonaceous phases (carbon and binder) and the electrolyte space. The good contrast was achieved by utilizing an improved FIB-SEM sample preparation method that combined infiltration of the electrolyte space with a low-viscosity silicone resin and triple ion-beam polishing. Morphological parameters quantified include phase volume fraction, surface area, feature size distribution, connectivity, and tortuosity. Electrolyte tortuosity was determined using two different geometric calculations that were in good agreement. The electrolyte tortuosity distribution versus position within the electrode was found to be highly inhomogeneous; this will lead to inhomogeneous electrode lithiation/delithiation at high C-rates that could potentially cause battery degradation.

  18. A 3D reconstruction method of the body envelope from biplanar X-rays: Evaluation of its accuracy and reliability.

    Nérot, Agathe; Choisne, Julie; Amabile, Célia; Travert, Christophe; Pillet, Hélène; Wang, Xuguang; Skalli, Wafa

    2015-12-16

    The aim of this study was to propose a novel method for reconstructing the external body envelope from the low dose biplanar X-rays of a person. The 3D body envelope was obtained by deforming a template to match the surface profiles in two X-rays images in three successive steps: global morphing to adopt the position of a person and scale the template׳s body segments, followed by a gross deformation and a fine deformation using two sets of pre-defined control points. To evaluate the method, a biplanar X-ray acquisition was obtained from head to foot for 12 volunteers in a standing posture. Up to 172 radio-opaque skin markers were attached to the body surface and used as reference positions. Each envelope was reconstructed three times by three operators. Results showed a bias lower than 7mm and a confidence interval (95%) of reproducibility lower than 6mm for all body parts, comparable to other existing methods matching a template onto stereographic photographs. The proposed method offers the possibility of reconstructing body shape in addition to the skeleton using a low dose biplanar X-rays system.

  19. Clinical anatomy and 3D virtual reconstruction of the lumbar plexus with respect to lumbar surgery

    Ding Zi-hai

    2011-04-01

    Full Text Available Abstract Background Exposure of the anterior or lateral lumbar via the retroperitoneal approach easily causes injuries to the lumbar plexus. Lumbar plexus injuries which occur during anterior or transpsoas lumbar spine exposure and placement of instruments have been reported. This study aims is to provide more anatomical data and surgical landmarks in operations concerning the lumbar plexus in order to prevent lumbar plexus injuries and to increase the possibility of safety in anterior approach lumbar surgery. Methods To study the applied anatomy related to the lumbar plexus of fifteen formaldehyde-preserved cadavers, Five sets of Virtual Human (VH data set were prepared and used in the study. Three-dimensional (3D computerized reconstructions of the lumbar plexus and their adjacent structures were conducted from the VH female data set. Results The order of lumbar nerves is regular. From the anterior view, lumbar plexus nerves are arranged from medial at L5 to lateral at L2. From the lateral view, lumbar nerves are arranged from ventral at L2 to dorsal at L5. The angle of each nerve root exiting outward to the corresponding intervertebral foramen increases from L1 to L5. The lumbar plexus nerves are observed to be in close contact with transverse processes (TP. All parts of the lumbar plexus were located by sectional anatomy in the dorsal third of the psoas muscle. Thus, access to the psoas major muscle at the ventral 2/3 region can safely prevent nerve injuries. 3D reconstruction of the lumbar plexus based on VCH data can clearly show the relationships between the lumbar plexus and the blood vessels, vertebral body, kidney, and psoas muscle. Conclusion The psoas muscle can be considered as a surgical landmark since incision at the ventral 2/3 of the region can prevent lumbar plexus injuries for procedures requiring exposure of the lateral anterior of the lumbar. The transverse process can be considered as a landmark and reference in surgical

  20. In-air versus underwater comparison of 3D reconstruction accuracy using action sport cameras.

    Bernardina, Gustavo R D; Cerveri, Pietro; Barros, Ricardo M L; Marins, João C B; Silvatti, Amanda P

    2017-01-25

    Action sport cameras (ASC) have achieved a large consensus for recreational purposes due to ongoing cost decrease, image resolution and frame rate increase, along with plug-and-play usability. Consequently, they have been recently considered for sport gesture studies and quantitative athletic performance evaluation. In this paper, we evaluated the potential of two ASCs (GoPro Hero3+) for in-air (laboratory) and underwater (swimming pool) three-dimensional (3D) motion analysis as a function of different camera setups involving the acquisition frequency, image resolution and field of view. This is motivated by the fact that in swimming, movement cycles are characterized by underwater and in-air phases what imposes the technical challenge of having a split volume configuration: an underwater measurement volume observed by underwater cameras and an in-air measurement volume observed by in-air cameras. The reconstruction of whole swimming cycles requires thus merging of simultaneous measurements acquired in both volumes. Characterizing and optimizing the instrumental errors of such a configuration makes mandatory the assessment of the instrumental errors of both volumes. In order to calibrate the camera stereo pair, black spherical markers placed on two calibration tools, used both in-air and underwater, and a two-step nonlinear optimization were exploited. The 3D reconstruction accuracy of testing markers and the repeatability of the estimated camera parameters accounted for system performance. For both environments, statistical tests were focused on the comparison of the different camera configurations. Then, each camera configuration was compared across the two environments. In all assessed resolutions, and in both environments, the reconstruction error (true distance between the two testing markers) was less than 3mm and the error related to the working volume diagonal was in the range of 1:2000 (3×1.3×1.5m(3)) to 1:7000 (4.5×2.2×1.5m(3)) in agreement with the

  1. Genetic approach to reconstruct complex regional geological setting of the Baltic basin in 3D geological model

    Popovs, K.; Saks, T.; Ukass, J.; Jatnieks, J.

    2012-04-01

    Interpretation of geological structures in 3D geological models is a relatively new research topic that is already standardized in many geological branches. Due to its wide practical application, these models are indispensable and become one of the dominant interpretation methods in reducing geological uncertainties in many geology fields. Traditionally, geological concepts complement quantitative as much as qualitative data to obtain a model deemed acceptable, however, available data very often is insufficient and modeling methods primarily focus on spatial data but geological history usually is mostly neglected for the modeling of large sedimentary basins. A need to better integrate the long and often complex geological history and geological knowledge into modeling procedure is very acute to gain geological insight and improve the quality of geological models. During this research, 3D geological model of the Baltic basin (BB) was created. Because of its complex regional geological setting - wide range of the data sources with multiple scales, resolution and density as well as its various source formats, the study area provides a challenge for the 3D geological modeling. In order to create 3D regional geometrical model for the study area algorithmic genetic approach for model geometry reconstruction was applied. The genetic approach is based on the assumption that post-depositional deformation produce no significant change in sedimentary strata volume, assuming that the strata thickness and its length in a cross sectional plane remains unchanged except as a result of erosion. Assuming that the tectonic deformation occurred in sequential cycles and subsequent tectonic stage strata is separated by regional unconformity as is the case of the BB, there is an opportunity for algorithmic approach in reconstructing these conditions by sequentially reconstructing the layer original thickness. Layer thicknesses were sliced along fault lines, where applicable layer

  2. Reconstruction of 3D Surface Contour Model of Object Based on Convex Hull%基于凸包的物体三维表面轮廓模型的构建

    乔海峰; 王林豪

    2013-01-01

    In this dissertation, A method was presented to get the approximate surface contour model of the object based on con?vex hull. Through doing convex hull operation on scattered point sets gained from various method which was pretreated could obtain surface extreme point of the object.Then rebuilt the surface of the object according to these points.In this article taking Vi?sual C++ 6.0 for platform,using visualization class library VTK,we also did computer simulation of this method.and got a compa?rable ideal result.%该文提出了一种以凸包为基础来表达物体表面近似轮廓模型的方法.通过对由各种方式所得的散乱点集进行预处理,然后进行凸包运算,求得物体表面轮廓极值点,再依据这些点进行物体表面的三维重建.该文以Visual C++6.0为开发平台,采用可视化类库VTK,对这一方法进行计算机仿真,取得了较为理想的效果.

  3. 2D and 3D reconstruction and geomechanical characterization of kilometre-scale complex folded structures

    Zanchi, Andrea; Agliardi, Federico; Crosta, Giovanni B.; Villa, Alberto; Bistacchi, Andrea; Iudica, Gaetano

    2015-04-01

    points based on their normal vector orientations to identify and map bedding and fractures. Combined stereographic analysis of bedding orientations and use of filters allowed the quantification of fold hinge and limb geometries and their 3D reconstruction in GOCAD. Fracture patterns derived from points clouds and field data allowed identifying different geomechanical domains associated to the folded structure. Our results encourage the integrated analysis of high-resolution point clouds and detailed structural and geomechanical field data as inputs to the 3D geometrical reconstruction and modelling of folded rock masses. Validation of virtual outcrop reconstructions through a comparison with field structural measurements suggests that very precise geometrical constraints can be obtained by TLS on geological bodies with complex geometrical features. However, additional constraints on TLS survey layout design are required to optimise the reconstruction and distinction of specific structural elements associated to folding as bedding and fold-related fracture systems.

  4. (Almost) Featureless Stereo: Calibration and Dense 3D Reconstruction Using Whole Image Operations

    Smelyanskiy, V. N.; Morris, R. D.; Maluf, D. A.; Cheeseman, P.

    2001-01-01

    The conventional approach to shape from stereo is via feature extraction and correspondences. This results in estimates of the camera parameters and a typically spare estimate of the surface. Given a set of calibrated images, a dense surface reconstruction is possible by minimizing the error between the observed image and the image rendered from the estimated surface with respect to the surface model parameters. Given an uncalibrated image and an estimated surface, the camera parameters can be estimated by minimizing the error between the observed and rendered images a function of the camera parameters. We use a very small dense set of matched features to provide camera parameter estimates for the initial dense surface estimate. We then re-estimate the camera parameters as described above, and then re-estimate the surface. This process is iterated. Whilst it can not be proven to converge, we have found that around three iterations results in excellent surface and camera parameters estimates.

  5. EFFECT OF DIGITAL FRINGE PROJECTION PARAMETERS ON 3D RECONSTRUCTION ACCURACY

    A. Babaei

    2013-09-01

    This paper aims to evaluate different parameters which affect the accuracy of the final results. For this purpose, some test were designed and implemented. These tests assess the number of phase shifts, spatial frequency of the fringe pattern, light condition, noise level of images, and the color and material of target objects on the quality of resulted phase map. The evaluation results demonstrate that digital fringe projection method is capable of obtaining depth map of complicated object with high accuracy. The contrast test results showed that this method is able to work under different ambient light condition; although at places with high light condition will not work properly. The results of implementation on different objects with various materials, color and shapes demonstrate the high capability of this method of 3D reconstruction.

  6. Data Management Framework of Drone-Based 3d Model Reconstruction of Disaster Site

    Kim, C.; Moon, H.; Lee, W.

    2016-06-01

    To rescue peoples in the disaster site in time, information acquisition of current feature of collapsed buildings and terrain is quite important for disaster site rescue manager. Based on information about disaster site, they can accurately plan the rescue process and remove collapsed buildings or other facilities. However, due to the harsh condition of disaster areas, rapid and accurate acquisition of disaster site information is not an easy task. There are possibilities of further damages in the collapse and there are also difficulties in acquiring information about current disaster situation due to large disaster site and limited rescue resources. To overcome these circumstances of disaster sites, an unmanned aerial vehicle, commonly known as a drone is used to rapidly and effectively acquire current image data of the large disaster areas. Then, the procedure of drone-based 3D model reconstruction visualization function of developed system is presented.

  7. QUALITY ASSESSMENT OF 3D RECONSTRUCTION USING FISHEYE AND PERSPECTIVE SENSORS

    C. Strecha

    2015-03-01

    Full Text Available Recent mathematical advances, growing alongside the use of unmanned aerial vehicles, have not only overcome the restriction of roll and pitch angles during flight but also enabled us to apply non-metric cameras in photogrammetric method, providing more flexibility for sensor selection. Fisheye cameras, for example, advantageously provide images with wide coverage; however, these images are extremely distorted and their non-uniform resolutions make them more difficult to use for mapping or terrestrial 3D modelling. In this paper, we compare the usability of different camera-lens combinations, using the complete workflow implemented in Pix4Dmapper to achieve the final terrestrial reconstruction result of a well-known historical site in Switzerland: the Chillon Castle. We assess the accuracy of the outcome acquired by consumer cameras with perspective and fisheye lenses, comparing the results to a laser scanner point cloud.

  8. 3D equilibrum reconstruction for the RFP with V3FIT

    Terranova, David; Marrelli, Lionello; Hanson, James; Hirshman, Steven; Marco, Gobbin; Trevisan, Gregorio

    2012-10-01

    Helical states are routinely found in all Reversed Field Pinch experiments and their description requires a 3D equilibrium reconstruction. We present the application of the V3FIT code for the RFX-mod experiment. Magnetic and kinetic diagnostics (Te from Thomson scattering, SXR emissivity, Ne from interferometer) are used in order to properly deal with the problem of degeneracy when only external magnetic measurements are used. A sensitivity study of external measurements on the internal topological structure is also presented, showing a link between external measurements and internal profiles. Fixed-boundary equilibria can be computed by independently calculating vacuum fields. The results provide a good match with experimental data and the obtained equilibria are suitable for both transport and stability analysis.

  9. 3D reconstruction of the source and scale of buried young flood channels on Mars.

    Morgan, Gareth A; Campbell, Bruce A; Carter, Lynn M; Plaut, Jeffrey J; Phillips, Roger J

    2013-05-01

    Outflow channels on Mars are interpreted as the product of gigantic floods due to the catastrophic eruption of groundwater that may also have initiated episodes of climate change. Marte Vallis, the largest of the young martian outflow channels (Mars hydrologic activity during a period otherwise considered to be cold and dry. Using data from the Shallow Radar sounder on the Mars Reconnaissance Orbiter, we present a three-dimensional (3D) reconstruction of buried channels on Mars and provide estimates of paleohydrologic parameters. Our work shows that Cerberus Fossae provided the waters that carved Marte Vallis, and it extended an additional 180 kilometers to the east before the emplacement of the younger lava flows. We identified two stages of channel incision and determined that channel depths were more than twice those of previous estimates.

  10. ROLE OF COMPUTED TOMOGRAPHY AND 3D RECONSTRUCTIONS IN PELVIC RIM AND ACETABULAR FRACTURES

    Somasekhar

    2015-03-01

    Full Text Available To determine the role of computed tomography and 3D Reconstructions in classification of pelvic rim and acetabular fractures and assessing possible changes in fracture classification . We collected retrospective information in a period of 18 months in our institution , of patients with pelvic injuries considering --- demographic data , radiological examination performed and the moment when it was performed , fracture classification and management . In 12 cases ( 54% there were isolated pelvic rim fr actures and 7 cases of isolated acetabular fractures ( 32% and 3 cases ( 14% involving both . After the CT scan was obtained , the initial classification was changed in five cases ( 22 . 7% . Tridimensional CT based modeling is very helpful in the classificati on of pelvic fractures and is a complement of the plain X - ray .

  11. 3-D reconstruction of an ancient Egyptian mummy using X-ray computer tomography.

    Baldock, C; Hughes, S W; Whittaker, D K; Taylor, J; Davis, R; Spencer, A J; Tonge, K; Sofat, A

    1994-12-01

    Computer tomography has been used to image and reconstruct in 3-D an Egyptian mummy from the collection of the British Museum. This study of Tjentmutengebtiu, a priestess from the 22nd dynasty (945-715 BC) revealed invaluable information of a scientific, Egyptological and palaeopathological nature without mutilation and destruction of the painted cartonnage case or linen wrappings. Precise details on the removal of the brain through the nasal cavity and the viscera from the abdominal cavity were obtained. The nature and composition of the false eyes were investigated. The detailed analysis of the teeth provided a much closer approximation of age at death. The identification of materials used for the various amulets including that of the figures placed in the viscera was graphically demonstrated using this technique.

  12. 3D optical phase reconstruction within PMMA samples using a spectral OCT system

    Briones-R., Manuel d. J.; De La Torre-Ibarra, Manuel H.; Mendoza Santoyo, Fernando

    2015-08-01

    The optical coherence tomography (OCT) technique has proved to be a useful method in biomedical areas such as ophthalmology, dentistry, dermatology, among many others. In all these applications the main target is to reconstruct the internal structure of the samples from which the physician's expertise may recognize and diagnose the existence of a disease. Nowadays OCT has been applied one step further and is used to study the mechanics of some particular type of materials, where the resulting information involves more than just their internal structure and the measurement of parameters such as displacements, stress and strain. Here we report on a spectral OCT system used to image the internal 3D microstructure and displacement maps from a PMMA (Poly-methyl-methacrylate) sample, subjected to a deformation by a controlled three point bending and tilting. The internal mechanical response of the polymer is shown as consecutive 2D images.

  13. Thickness Reconstruction of Layers by 3D Geometrical Model to Characterize Caledonian Tectonic Complex and Data in Latvia

    Ukass, J.; Saks, T.; Popovs, K.

    2012-04-01

    reaches 30%. About 20 - 25% of the initial stratigraphic units subjected to faulting are estimated to be eroded. The modeling results allowed identifying areas of inconsistently interpreted geology and allowed to significantly reduce the geometrical uncertainties of the structural surfaces. Modeling results allowed identifying several new hypothetical local structures associated with the faulting. Application of a 3D thickness reconstruction can be very useful for characterizing tectonic structures and their evolution. This Project was supported by ESF project "Establishment of interdisciplinary scientist group and modeling system for Groundwater research" (Project Nr. 2009/0212/1DP/1.1.1.2.0/APIA/VIAA/060).

  14. Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images

    Lotz, Johannes; Berger, Judith; Müller, Benedikt; Breuhahn, Kai; Grabe, Niels; Heldmann, Stefan; Homeyer, André; Lahrmann, Bernd; Laue, Hendrik; Olesch, Janine; Schwier, Michael; Sedlaczek, Oliver; Warth, Arne

    2014-03-01

    Much insight into metabolic interactions, tissue growth, and tissue organization can be gained by analyzing differently stained histological serial sections. One opportunity unavailable to classic histology is three-dimensional (3D) examination and computer aided analysis of tissue samples. In this case, registration is needed to reestablish spatial correspondence between adjacent slides that is lost during the sectioning process. Furthermore, the sectioning introduces various distortions like cuts, folding, tearing, and local deformations to the tissue, which need to be corrected in order to exploit the additional information arising from the analysis of neighboring slide images. In this paper we present a novel image registration based method for reconstructing a 3D tissue block implementing a zooming strategy around a user-defined point of interest. We efficiently align consecutive slides at increasingly fine resolution up to cell level. We use a two-step approach, where after a macroscopic, coarse alignment of the slides as preprocessing, a nonlinear, elastic registration is performed to correct local, non-uniform deformations. Being driven by the optimization of the normalized gradient field (NGF) distance measure, our method is suitable for differently stained and thus multi-modal slides. We applied our method to ultra thin serial sections (2 μm) of a human lung tumor. In total 170 slides, stained alternately with four different stains, have been registered. Thorough visual inspection of virtual cuts through the reconstructed block perpendicular to the cutting plane shows accurate alignment of vessels and other tissue structures. This observation is confirmed by a quantitative analysis. Using nonlinear image registration, our method is able to correct locally varying deformations in tissue structures and exceeds the limitations of globally linear transformations.

  15. The Avignon Bridge: a 3d Reconstruction Project Integrating Archaeological, Historical and Gemorphological Issues

    Berthelot, M.; Nony, N.; Gugi, L.; Bishop, A.; De Luca, L.

    2015-02-01

    The history and identity of the Avignon's bridge is inseparable from that of the Rhône river. Therefore, in order to share the history and memory of the Rhône, it is essential to get to know this bridge and especially to identify and make visible the traces of its past, its construction, its interaction with the river dynamics, which greatly influenced his life. These are the objectives of the PAVAGE project that focuses on digitally surveying, modelling and re-visiting a heritage site of primary importance with the aim of virtually restoring the link between the two sides which, after the disappearance of the Roman bridge of Arles, constituted for a long time the only connection between Lyon or Vienna and the sea. Therefore, this project has an important geo-historical dimension for which geo-morphological and paleoenvironmental studies were implemented in connection with the latest digital simulation methods exploiting geographic information systems. By integrating knowledge and reflections of archaeologists, historians, geomorphologists, environmentalists, architects, engineers and computer scientists, the result of this project (which involved 5 laboratories during 4 years) is a 3D digital model covering an extension of 50 km2 achieved by integrating satellite imagery, UAV-based acquisitions, terrestrial laser scanning and photogrammetry, etc. Beyond the actions of scientific valorisation concerning the historical and geomorphological dimensions of the project, the results of this work of this interdisciplinary investigation and interpretation of this site are today integrated within a location-based augmented reality application allowing tourists to exploring the virtual reconstruction of the bridge and its environment through tablets inside the portion of territory covered by this project (between Avignon and Villeneuve-lez-Avignon). This paper presents the main aspects of the 3D virtual reconstruction approach.

  16. Compressed Sensing Reconstruction of 3D Ultrasound Data Using Dictionary Learning and Line-Wise Subsampling.

    Lorintiu, Oana; Liebgott, Hervé; Alessandrini, Martino; Bernard, Olivier; Friboulet, Denis

    2015-12-01

    In this paper we present a compressed sensing (CS) method adapted to 3D ultrasound imaging (US). In contrast to previous work, we propose a new approach based on the use of learned overcomplete dictionaries that allow for much sparser representations of the signals since they are optimized for a particular class of images such as US images. In this study, the dictionary was learned using the K-SVD algorithm and CS reconstruction was performed on the non-log envelope data by removing 20% to 80% of the original data. Using numerically simulated images, we evaluate the influence of the training parameters and of the sampling strategy. The latter is done by comparing the two most common sampling patterns, i.e., point-wise and line-wise random patterns. The results show in particular that line-wise sampling yields an accuracy comparable to the conventional point-wise sampling. This indicates that CS acquisition of 3D data is feasible in a relatively simple setting, and thus offers the perspective of increasing the frame rate by skipping the acquisition of RF lines. Next, we evaluated this approach on US volumes of several ex vivo and in vivo organs. We first show that the learned dictionary approach yields better performances than conventional fixed transforms such as Fourier or discrete cosine. Finally, we investigate the generality of the learned dictionary approach and show that it is possible to build a general dictionary allowing to reliably reconstruct different volumes of different ex vivo or in vivo organs.

  17. GPU accelerated generation of digitally reconstructed radiographs for 2-D/3-D image registration.

    Dorgham, Osama M; Laycock, Stephen D; Fisher, Mark H

    2012-09-01

    Recent advances in programming languages for graphics processing units (GPUs) provide developers with a convenient way of implementing applications which can be executed on the CPU and GPU interchangeably. GPUs are becoming relatively cheap, powerful, and widely available hardware components, which can be used to perform intensive calculations. The last decade of hardware performance developments shows that GPU-based computation is progressing significantly faster than CPU-based computation, particularly if one considers the execution of highly parallelisable algorithms. Future predictions illustrate that this trend is likely to continue. In this paper, we introduce a way of accelerating 2-D/3-D image registration by developing a hybrid system which executes on the CPU and utilizes the GPU for parallelizing the generation of digitally reconstructed radiographs (DRRs). Based on the advancements of the GPU over the CPU, it is timely to exploit the benefits of many-core GPU technology by developing algorithms for DRR generation. Although some previous work has investigated the rendering of DRRs using the GPU, this paper investigates approximations which reduce the computational overhead while still maintaining a quality consistent with that needed for 2-D/3-D registration with sufficient accuracy to be clinically acceptable in certain applications of radiation oncology. Furthermore, by comparing implementations of 2-D/3-D registration on the CPU and GPU, we investigate current performance and propose an optimal framework for PC implementations addressing the rigid registration problem. Using this framework, we are able to render DRR images from a 256×256×133 CT volume in ~24 ms using an NVidia GeForce 8800 GTX and in ~2 ms using NVidia GeForce GTX 580. In addition to applications requiring fast automatic patient setup, these levels of performance suggest image-guided radiation therapy at video frame rates is technically feasible using relatively low cost PC

  18. Reconstructing the Vulcano Island evolution from 3D modeling of magnetic signatures

    Napoli, Rosalba; Currenti, Gilda

    2016-06-01

    High-resolution ground and marine magnetic data are exploited for a detailed definition of a 3D model of the Vulcano Island volcanic complex. The resulting 3D magnetic imaging, obtained by 3-D inverse modeling technique, has delivered useful constraints both to reconstruct the Vulcano Island evolution and to be used as input data for volcanic hazard assessment models. Our results constrained the depth and geometry of the main geo-structural features revealing more subsurface volcanic structures than exposed ones and allowing to elucidate the relationships between them. The recognition of two different magnetization sectors, approximatively coincident with the structural depressions of Piano caldera, in the southern half of the island, and La Fossa caldera at the north, suggests a complex structural and volcanic evolution. Magnetic highs identified across the southern half of the island reflect the main crystallized feeding systems, intrusions and buried vents, whose NNW-SSE preferential alignment highlights the role of the NNW-SSE Tindari-Letojanni regional system from the initial activity of the submarine edifice, to the more recent activity of the Vulcano complex. The low magnetization area, in the middle part of the island may result from hydrothermally altered rocks. Their presence not only in the central part of the volcano edifice but also in other peripheral areas, is a sign of a more diffuse historical hydrothermal activity than in present days. Moreover, the high magnetization heterogeneity within the upper flanks of La Fossa cone edifice is an imprint of a composite distribution of unaltered and altered rocks with different mechanical properties, which poses in this area a high risk level for failure processes especially during volcanic or hydrothermal crisis.

  19. Without gaps - 3D photo-reconstruction of gully headcuts by combined utilisation of UAV and close-range photogrammetry

    Stöcker, Claudia; Karrasch, Pierre; Eltner, Anette

    2015-04-01

    Gully erosion is a worldwide phenomenon causing permanent degradation of fertile land. Especially in the Mediterranean, gullies contribute to high soil loss rates which necessitate multi-temporal and high resolution monitoring. Gullies naturally exhibit complex surface morphologies and hence are difficult to measure. Images acquired airborne or terrestrial are possible data sources for digital gully modelling due to availing of photogrammetric methods to achieve 3D models. In this regard unmanned airborne vehicles (UAVs) allow for low cost, flexible and frequent areal gully monitoring, but exhibit limitations as a result of the birds-eye view - i.e. at steep sidewalls and overhanging areas. Terrestrial images offer advantages at local assessments and can be obtained spontaneously as needed. However, images acquired from ground are not able to ensure areal coverage. To integrate the advantages of both data sources and to overcome the above mentioned limitations, this study introduces a methodological approach of combined utilisation of nadir UAV data and oblique terrestrial images for 3D photo reconstruction. Two gully headcuts in Andalusia (Spain) are analysed to confirm the suitability of the synergetic data usage. The results show that the UAV model of the gully, generated from images from flying heights of 15 m, implies inconsistency of data at slope gradients of 50 to 60 °. To eliminate these gaps additional terrestrial images can be integrated, which are geo-referenced solely using information of the already calculated 3D model and orthophoto from the UAV images. Referencing errors of the terrestrial point clouds are fixed by applying fine registration. The final merged digital gully model reveals a resolution of 0.5 cm and an accuracy of 1 cm. Concluding, high density point clouds based on the fusion of UAV and terrestrial image data show a significant improvement of 3D photo-reconstruction of two gully headcuts compared to detached processing of single data

  20. Introduction to 3D reconstruction of macromolecules using single particle electron microscopy

    Oscar LLORCA

    2005-01-01

    Single-particle electron microscopy has now reached maturity, becoming a commonly used method in the examination ofmacromolecular structure. Using a small amount of purified protein, isolated molecules are observed under the electron microscope and the data collected can be averaged into a 3D reconstruction.Single-particle electron microscopy is an appropriate tool for the analysis of proteins that can only be obtained in modest quantities, like many of the large complexes currently of interest in biomedicine. Whilst the use of electron microscopy expands, new methods are being developed and improved to deal with further challenges, such as reaching higher resolutions and the combination of information at different levels of structural detail. More importantly, present methodology is still not robust enough when studying certain "tricky" proteins like those displaying extensive conformational flexibility and a great deal of user expertise is required, posing a threat to the consistency of the final structure. This mini review describes a brief outline of the methods currently used in the 3D analysis of macromolecules using single-particle electron microscopy, intended for those first approaching this field. A summary of methods, techniques, software, and some recent work is presented. The spectacular improvements to the technique in recent years, its advantages and limitations compared to other structural methods,and its future developments are discussed.

  1. Assessment of anterior cruciate ligament reconstruction using 3D ultrashort echo-time MR imaging.

    Rahmer, Jürgen; Börnert, Peter; Dries, Sebastian P M

    2009-02-01

    This work demonstrates the potential of ultrashort TE (UTE) imaging for visualizing graft material and fixation elements after surgical repair of soft tissue trauma such as ligament or meniscal injury. Three asymptomatic patients with anterior cruciate ligament (ACL) reconstruction using different graft fixation methods were imaged at 1.5T using a 3D UTE sequence. Conventional multislice turbo spin-echo (TSE) measurements were performed for comparison. 3D UTE imaging yields high signal from tendon graft material at isotropic spatial resolution, thus facilitating direct positive contrast graft visualization. Furthermore, metal and biopolymer graft fixation elements are clearly depicted due to the high contrast between the signal-void implants and the graft material. Thus, the ability of UTE MRI to visualize short-T(2) tissues such as tendons, ligaments, or tendon grafts can provide additional information about the status of the graft and its fixation in the situation after cruciate ligament repair. UTE MRI can therefore potentially support diagnosis when problems occur or persist after surgical procedures involving short-T(2) tissues and implants.

  2. Implicit Shape Reconstruction of Unorganized Points Using PDE-Based Deformable 3D Manifolds

    Elena

    2010-01-01

    In this work we consider the problem of shape reconstruction from an unorganized data set which has many important applications in medical imaging, scientific computing, reverse engineering and geometric modelling. The reconstructed surface is obtained by continuously deforming an initial surface following the Partial Differential Equation (PDE)-based diffusion model derived by a minimal volume-like variational formulation. The evolution is driven both by the distance from the data set and by the curvature analytically computed by it. The distance function is computed by implicit local interpolants defined in terms of radial basis functions. Space discretization of the PDE model is obtained by finite co-volume schemes and semi-implicit approach is used in time/scale. The use of a level set method for the numerical computation of the surface reconstruction allows us to handle complex geometry and even changing topology,without the need of user-interaction. Numerical examples demonstrate the ability of the proposed method to produce high quality reconstructions. Moreover, we show the effectiveness of the new approach to solve hole filling problems and Boolean operations between different data sets.

  3. Surfaces, Digitisations and Reconstructions

    2015-01-01

    We present a new digital reconstruction of r-regular sets in three-dimensional Euclidean space. We introduce a vector field and analyse the relation between the topologies of the boundaries of the r-regular set and its reconstruction. This reconstruction can be carried out faster than prior models...

  4. A New Approach for 3D Ocean Reconstruction from Limited Observations

    Xiao, X.

    2014-12-01

    Satellites can measure ocean surface height and temperature with sufficient spatial and temporal resolution to capture mesoscale features across the globe. Measurements of the ocean's interior, however, remain sparse and irregular, thus the dynamical inference of subsurface flows is necessary to interpret surface measurements. The most common (and accurate) approach is to incorporate surface measurements into a data-assimilating forward ocean model, but this approach is expensive and slow, and thus completely impractical for time-critical needs, such as offering guidance to ship-based observational campaigns. Two recently-developed approaches have made use of the apparent partial consistency of upper ocean dynamics with quasigeostrophic flows that take into account surface buoyancy gradients (i.e. the "surface quasigeostrophic" (SQG) model) to "reconstruct" the interior flow from knowledge of surface height and buoyancy. Here we improve on these methods in three ways: (1) we adopt a modal decomposition that represents the surface and interior dynamics in an efficient way, allowing the separation of surface energy from total energy; (2) we make use of instantaneous vertical profile observations (e.g. from ARGO data) to improve the reconstruction of eddy variables at depth; and (3) we use advanced statistical methods to choose the optimal modes for the reconstruction. The method is tested using a series of high horizontal and vertical resolution quasigeostrophic simulation, with a wide range of surface buoyancy and interior potential vorticity gradient combinations. In addtion, we apply the method to output from a very high resolution primitive equation simulation of a forced and dissipated baroclinic front in a channel. Our new method is systematically compared to the existing methods as well. Its advantages and limitations will be discussed.

  5. 3D PET image reconstruction based on Maximum Likelihood Estimation Method (MLEM) algorithm

    Słomski, Artur; Bednarski, Tomasz; Białas, Piotr; Czerwiński, Eryk; Kapłon, Łukasz; Kochanowski, Andrzej; Korcyl, Grzegorz; Kowal, Jakub; Kowalski, Paweł; Kozik, Tomasz; Krzemień, Wojciech; Molenda, Marcin; Moskal, Paweł; Niedźwiecki, Szymon; Pałka, Marek; Pawlik, Monika; Raczyński, Lech; Salabura, Piotr; Gupta-Sharma, Neha; Silarski, Michał; Smyrski, Jerzy; Strzelecki, Adam; Wiślicki, Wojciech; Zieliński, Marcin; Zoń, Natalia

    2015-01-01

    Positron emission tomographs (PET) do not measure an image directly. Instead, they measure at the boundary of the field-of-view (FOV) of PET tomograph a sinogram that consists of measurements of the sums of all the counts along the lines connecting two detectors. As there is a multitude of detectors build-in typical PET tomograph structure, there are many possible detector pairs that pertain to the measurement. The problem is how to turn this measurement into an image (this is called imaging). Decisive improvement in PET image quality was reached with the introduction of iterative reconstruction techniques. This stage was reached already twenty years ago (with the advent of new powerful computing processors). However, three dimensional (3D) imaging remains still a challenge. The purpose of the image reconstruction algorithm is to process this imperfect count data for a large number (many millions) of lines-of-responce (LOR) and millions of detected photons to produce an image showing the distribution of the l...

  6. Successful micronucleus testing with the EPI/001 3D reconstructed epidermis model: preliminary findings.

    Andres, E; Molinari, J; Remoué, N; Sá-Rocha, V M; Barrichello, C; Hurtado, S P

    2012-03-18

    Currently, the cosmetics industry relies on the results of in vitro genotoxicity tests to assess the safety of chemicals. Although the cytokinesis-block micronucleus (CBMN) test for the detection of cells that have divided once is routinely used and currently accepted by regulatory agencies, it has some limitations. Reconstituted human epidermis (RHE) is widely used in safety assessments because its physiological properties resemble those of the skin, and because it allows testing of substances such as hydrophobic compounds. Thus, the micronucleus test is being adapted for application in RHE-reconstructed tissues. Here we investigated whether two different reconstructed epidermis models (EPI/001 from Straticell, and RHE/S/17 from Skinethic) are suitable for application of the micronucleus test. We found that acetone does not modify micronucleus frequency, cell viability, and model structure, compared with non-treated RHE. Treatment of the EPI/001 model with mitomycin C and vinblastine resulted in a dose-dependent increase of micronucleus frequency as well as a decrease of tissue viability and of binucleated cell rate, while no changes of the epidermal structure were observed. The number of binucleated cells obtained with the RHE/S/17 model was too small to permit micronucleus testing. These results indicate that the proliferative rate of the tissue used is a critical parameter in performing the micronucleus test on a 3D model.

  7. 3D building reconstruction from ALS data using unambiguous decomposition into elementary structures

    Jarząbek-Rychard, M.; Borkowski, A.

    2016-08-01

    The objective of the paper is to develop an automated method that enables for the recognition and semantic interpretation of topological building structures. The novelty of the proposed modeling approach is an unambiguous decomposition of complex objects into predefined simple parametric structures, resulting in the reconstruction of one topological unit without independent overlapping elements. The aim of a data processing chain is to generate complete polyhedral models at LOD2 with an explicit topological structure and semantic information. The algorithms are performed on 3D point clouds acquired by airborne laser scanning. The presented methodology combines data-based information reflected in an attributed roof topology graph with common knowledge about buildings stored in a library of elementary structures. In order to achieve an appropriate balance between reconstruction precision and visualization aspects, the implemented library contains a set of structure-depended soft modeling rules instead of strictly defined geometric primitives. The proposed modeling algorithm starts with roof plane extraction performed by the segmentation of building point clouds, followed by topology identification and recognition of predefined structures. We evaluate the performance of the novel procedure by the analysis of the modeling accuracy and the degree of modeling detail. The assessment according to the validation methods standardized by the International Society for Photogrammetry and Remote Sensing shows that the completeness of the algorithm is above 80%, whereas the correctness exceeds 98%.

  8. 3D reconstruction of single rising bubble in water using digital image processing and characteristic matrix

    Yuchen Bian; Feng Dong; Weida Zhang; Hongyi Wang; Chao Tan; Zhiqiang Zhang

    2013-01-01

    Reconstructing the shape of a bubble will lay a firm foundation for further description of the dynamic characteristics of bubbly flow,especially for a single rising bubble or separate bubbles whose interaction could be neglected.In this case,the rising bubble is usually simulated as an ellipsoid consisting of two semi-ellipsoids up and down.Thus the projected image of a bubble consists of two semi-ellipses.In this paper,a method for reconstructing the ellipsoid bubble model is described following digital image processing,using the Hough transform in 2D ellipse parameter extraction which could cover most of the bubble edge points in the image.Then a method based on characteristic symmetric matrix is described to detect 3D bubble ellipsoid model parameters from 2D ellipse parameters of projection planes.This method can be applied to bubbles rising with low-velocity in static flow field much in conformity with the projection theory and the shape variation of the rising bubble.This method does not need to solve nonlinear equation sets and provides an easy way to calculate the characteristic matrix of a space ellipsoid model for deformed bubble.For bubble application,two assumed conditions and a calibration factor are proposed to simplify calculation and detection.Errors of ellipsoid center and three axes are minor.Errors of the three rotation angles have no negative effect on further study on bubbly flow.

  9. Processing of MRI images weighted in TOF for blood vessels analysis: 3-D reconstruction

    Hernandez D, J.; Cordova F, T. [Universidad de Guanajuato, Campus Leon, Departamento de Ingenieria Fisica, Loma del Bosque No. 103, Lomas del Campestre, 37150 Leon, Guanajuato (Mexico); Cruz A, I., E-mail: hernandezdj.gto@gmail.com [CONACYT, Centro de Investigacion en Matematicas, A. C., Jalisco s/n, Col. Valenciana, 36000 Guanajuato, Gto. (Mexico)

    2015-10-15

    This paper presents a novel presents an approach based on differences of intensities for the identification of vascular structures in medical images from MRI studies of type time of flight method (TOF). The plating method hypothesis gave high intensities belonging to the vascular system image type TOF can be segmented by thresholding of the histogram. The enhanced vascular structures is performed using the filter Vesselness, upon completion of a decision based on fuzzy thresholding minimizes error in the selection of vascular structures. It will give a brief introduction to the vascular system problems and how the images have helped diagnosis, is summarized the physical history of the different imaging modalities and the evolution of digital images with computers. Segmentation and 3-D reconstruction became image type time of flight; these images are typically used in medical diagnosis of cerebrovascular diseases. The proposed method has less error in segmentation and reconstruction of volumes related to the vascular system, clear images and less noise compared with edge detection methods. (Author)

  10. Overlapping constraint for variational surface reconstruction

    Aanæs, Henrik; Solem, J.E.

    2005-01-01

    In this paper a counter example, illustrating a shortcoming in most variational formulations for 3D surface estimation, is presented. The nature of this shortcoming is a lack of an overlapping constraint. A remedy for this shortcoming is presented in the form of a penalty function with an analysis...... of the effects of this function on surface motion. For practical purposes, this will only have minor influence on current methods. However, the insight provided in the analysis is likely to influence future developments in the field of variational surface reconstruction....

  11. Automated Facial Anthropometry Over 3D Face Surface Textured Meshes

    2014-01-01

    Resumen : La automatización de la medición del rostro humano implica afrontar grandes desafíos técnicos y tecnológicos. Una alternativa de solución que ha encontrado gran aceptación dentro de la comunidad científica, corresponde a la utilización de tecnología de digitalización 3D con lo cual ha sido posible el desarrollo de técnicas de medición no invasivas. Sin embargo, la selección de los puntos que son la base de las mediciones es una tarea que aún requiere de la intervención humana. En...

  12. 3D description of particle detachment from a smooth surface

    Liberzon, Alex; Traugott, Hadar; International CollaborationTurbulence Research Collaboration

    2011-11-01

    This study explores the necessary turbulent flow conditions for initial entrainment of particles from smooth beds into zero-mean-shear flow in an oscillating grid chamber as compared to the bounded shear flow created in a lid-driven cavity. The experiments are not designed to fully mimic the real problem of sediment transport but rather identify key mechanisms, utilizing direct observation and quantification of particle motion at the beginning, during and after lift-off. In both turbulent flows, particle image velocimetry (PIV) and three-dimensional particle tracking velocimetry (3D-PTV) are used to determine the properties of turbulent flows and to track the movement of individual particles through the various phases of the resuspension. The combination of the experimental methods allow to correlate in a quantitative manner the flow conditions responsible for rolling, pick-up, detachment and re-entrainment of particles. The study is supported by the Israel Science Foundation under grant 782/08.

  13. 3D Interest Point Detection using Local Surface Characteristics with Application in Action Recognition

    Holte, Michael Boelstoft

    2014-01-01

    . The proposed Difference-of-Normals (DoN) 3D IP detector operates on the surface mesh, and evaluates the surface structure (curvature) locally (per vertex) in the mesh data. We present an exam- ple of application in action recognition from a sequence of 3-dimensional geometrical data, where local 3D motion de......In this paper we address the problem of detecting 3D inter- est points (IPs) using local surface characteristics. We con- tribute to this field by introducing a novel approach for detec- tion of 3D IPs directly on a surface mesh without any require- ments of additional image/video information...

  14. Optimal relaxation parameters of DRAMA (dynamic RAMLA) aiming at one-pass image reconstruction for 3D-PET

    Tanaka, Eiichi; Kudo, Hiroyuki

    2010-05-01

    We have reported a block-iterative algorithm named DRAMA for image reconstruction for emission tomography (Tanaka and Kudo 2003 Phys. Med. Biol. 48 1405-22). DRAMA is a modified version of the row-action maximum likelihood algorithm (RAMLA), in which the relaxation parameter is subset dependent and is changed in such a way that the noise propagation from subsets to the reconstructed image is substantially independent of the access order of the subsets. The algorithm provides fast convergence with a reasonable signal-to-noise ratio. The optimal relaxation parameter has been derived assuming a two-dimensional (2D)-PET model, and detailed performance in three-dimensional (3D) reconstruction has not been clear enough. We have developed the new version 'DRAMA-3D', based on the 3D-PET model. The optimal relaxation parameter is a function of the access order of the subsets and the ring difference, and its value is determined by simple formulas from the design parameters of the PET scanner, the operating conditions and the post-smoothing resolution. In this paper, we present the theory of DRAMA-3D, the results of simulation studies on the performance of DRAMA-3D and the comparative studies of the related algorithms. It is shown that DRAMA-3D is robust for various access orders of subsets and is suitable to realize one-pass (single-iteration) reconstruction.

  15. Use of reconstructed 3D VMEC equilibria to match effects of toroidally rotating discharges in DIII-D

    Wingen, A.; Wilcox, R. S.; Cianciosa, M. R.; Seal, S. K.; Unterberg, E. A.; Hanson, J. M.; Hirshman, S. P.; Lao, L. L.; Logan, N. C.; Paz-Soldan, C.; Shafer, M. W.

    2017-01-01

    A technique for tokamak equilibrium reconstructions is used for multiple DIII-D discharges, including L-mode and H-mode cases when weakly 3D fields ≤ft(δ B/B˜ {{10}-3}\\right) are applied. The technique couples diagnostics to the non-linear, ideal MHD equilibrium solver VMEC, using the V3FIT code, to find the most likely 3D equilibrium based on a suite of measurements. It is demonstrated that V3FIT can be used to find non-linear 3D equilibria that are consistent with experimental measurements of the plasma response to very weak 3D perturbations, as well as with 2D profile measurements. Observations at DIII-D show that plasma rotation larger than 20 krad s-1 changes the relative phase between the applied 3D fields and the measured plasma response. Discharges with low averaged rotation (10 krad s-1) and peaked rotation profiles (40 krad s-1) are reconstructed. Similarities and differences to forward modeled VMEC equilibria, which do not include rotational effects, are shown. Toroidal phase shifts of up to {{30}\\circ} are found between the measured and forward modeled plasma responses at the highest values of rotation. The plasma response phases of reconstructed equilibra on the other hand match the measured ones. This is the first time V3FIT has been used to reconstruct weakly 3D tokamak equilibria.

  16. Gothic Churches in Paris ST Gervais et ST Protais Image Matching 3d Reconstruction to Understand the Vaults System Geometry

    Capone, M.; Campi, M.; Catuogno, R.

    2015-02-01

    This paper is part of a research about ribbed vaults systems in French Gothic Cathedrals. Our goal is to compare some different gothic cathedrals to understand the complex geometry of the ribbed vaults. The survey isn't the main objective but it is the way to verify the theoretical hypotheses about geometric configuration of the flamboyant churches in Paris. The survey method's choice generally depends on the goal; in this case we had to study many churches in a short time, so we chose 3D reconstruction method based on image dense stereo matching. This method allowed us to obtain the necessary information to our study without bringing special equipment, such as the laser scanner. The goal of this paper is to test image matching 3D reconstruction method in relation to some particular study cases and to show the benefits and the troubles. From a methodological point of view this is our workflow: - theoretical study about geometrical configuration of rib vault systems; - 3D model based on theoretical hypothesis about geometric definition of the vaults' form; - 3D model based on image matching 3D reconstruction methods; - comparison between 3D theoretical model and 3D model based on image matching;

  17. A 3D Freehand Ultrasound System for Multi-view Reconstructions from Sparse 2D Scanning Planes

    Agurto Carla

    2011-01-01

    Full Text Available Abstract Background A significant limitation of existing 3D ultrasound systems comes from the fact that the majority of them work with fixed acquisition geometries. As a result, the users have very limited control over the geometry of the 2D scanning planes. Methods We present a low-cost and flexible ultrasound imaging system that integrates several image processing components to allow for 3D reconstructions from limited numbers of 2D image planes and multiple acoustic views. Our approach is based on a 3D freehand ultrasound system that allows users to control the 2D acquisition imaging using conventional 2D probes. For reliable performance, we develop new methods for image segmentation and robust multi-view registration. We first present a new hybrid geometric level-set approach that provides reliable segmentation performance with relatively simple initializations and minimum edge leakage. Optimization of the segmentation model parameters and its effect on performance is carefully discussed. Second, using the segmented images, a new coarse to fine automatic multi-view registration method is introduced. The approach uses a 3D Hotelling transform to initialize an optimization search. Then, the fine scale feature-based registration is performed using a robust, non-linear least squares algorithm. The robustness of the multi-view registration system allows for accurate 3D reconstructions from sparse 2D image planes. Results Volume measurements from multi-view 3D reconstructions are found to be consistently and significantly more accurate than measurements from single view reconstructions. The volume error of multi-view reconstruction is measured to be less than 5% of the true volume. We show that volume reconstruction accuracy is a function of the total number of 2D image planes and the number of views for calibrated phantom. In clinical in-vivo cardiac experiments, we show that volume estimates of the left ventricle from multi-view reconstructions

  18. Reconstruction of the ionospheric 3D electron density distribution by assimilation of ionosonde measurements and operational TEC estimations

    Gerzen, Tatjana; Wilken, Volker; Jakowski, Norbert; Hoque, Mainul M.

    2013-04-01

    New methods to generate maps of the F2 layer peak electron density of the ionosphere (NmF2) and to reconstruct the ionospheric 3D electron density distribution will be presented. For validation, reconstructed NmF2 maps will be compared with peak electron density measurements from independent ionosonde stations. The ionosphere is the ionized part of the upper Earth's atmosphere lying between about 50 km and 1000 km above the Earth's surface. From the applications perspective the electron density, Ne, is certainly one of the most important parameters of the ionosphere because of its strong impact on radio signal propagation. Especially the critical frequency, foF2, which is related to the F2 layer peak electron density, NmF2, according to the equation NmF2-m3 = 1.24 ? 1010(foF2-MHz)2 and builds the lower limit for the maximum usable frequency MUF, is of particular interest with regard to the HF radio communication applications. In a first order approximation the ionospheric delay of transionospheric radio waves of frequency f is proportional to 1-f2 and to the integral of the electron density (total electron content - TEC) along the ray path. Thus, the information about the total electron content along the receiver-to-satellite ray path can be obtained from the dual frequency measurements permanently transmitted by GNSS satellites. As data base for our reconstruction approaches we use the vertical sounding measurements of the ionosonde stations providing foF2 and routinely generated TEC maps in SWACI (http://swaciweb.dlr.de) at DLR Neustrelitz. The basic concept of our approach is the following one: To reconstruct NmF2 maps we assimilate the ionosonde data into the global Neustrelitz F2 layer Peak electron Density Model (NPDM) by means of a successive corrections method. The TEC maps are produced by assimilating actual ground based GPS measurements providing TEC into an operational version of Neustrelitz TEC Model (NTCM). Finally, the derived NmF2 and TEC maps in

  19. A LabVIEW based user-friendly nano-CT image alignment and 3D reconstruction platform

    Wang, Shenghao; Wang, Zhili; Gao, Kun; Wu, Zhao; Zhu, Peiping; Wu, Ziyu

    2014-01-01

    X-ray nanometer computed tomography (nano-CT) offers applications and opportunities in many scientific researches and industrial areas. Here we present a user-friendly and fast LabVIEW based package running, after acquisition of the raw projection images, a procedure to obtain the inner structure of the sample under analysis. At first, a reliable image alignment procedure fixes possible misalignments among image series due to mechanical errors, thermal expansion and other external contributions, then a novel fast parallel beam 3D reconstruction performs the tomographic reconstruction. The remarkable improved reconstruction after the image calibration confirms the fundamental role of the image alignment procedure. It minimizes blurring and additional streaking artifacts present in a reconstructed slice that cause loss of information and faked structures in the observed material. The nano-CT image alignment and 3D reconstruction LabVIEW package significantly reducing the data process, makes faster and easier th...

  20. Etruscanning 3D project. The 3D reconstruction of the Regolini Galassi Tomb as a research tool and a new approach in storytelling

    Wim Hupperetz

    2012-11-01

    Full Text Available In the “Etruscanning3D” european project framework, the virtual reconstruction of the Regolini Galassi tomb, in Cerveteri, has been realized, in order to recontextualize its precious funerary goods, today preserved in the vatican Museums, in their ancient space, digitally represented in 3D. The reconstruction has been preceded by a huge work of data collection, reinterpretations, topographical acquisitions through a variety of techniques, digital restorations, in order to create a plausible simulation of how the tomb could appear when it was closed, at the half of the VII century BC. The final purpose of the VR application is communication inside museums, so the narrative approach and the metaphors of interactions played another key role.

  1. 3D Surface Editing Based on Level-Sets

    Lin Maosong; Zhang Dianhua

    2005-01-01

    A novel method which integrates the topological flexibility of the level-set approach and the simphcity of point-sampled surfaces is proposed. The grid structure resulted from the level-set approach not only offers a wide range of powerful surface editing techniques for the point set surface editing, but also facilitates the topological change with ease. With the aid of point-based resampling,the method updates the surface shape of the point-based geometry quickly without worrying about point connectivity at all. The point set surface can also change its topology properly whenever a collision with other parts of itself is detected. The experiment demonstrates their effectiveness on several scanned objects and scan-converted models. Four examples of surface editing operations: smoothing, tapering, deforming, and Boolean operations, are presented.

  2. Surface classification and detection of latent fingerprints based on 3D surface texture parameters

    Gruhn, Stefan; Fischer, Robert; Vielhauer, Claus

    2012-06-01

    In the field of latent fingerprint detection in crime scene forensics the classification of surfaces has importance. A new method for the scientific analysis of image based information for forensic science was investigated in the last years. Our image acquisition based on a sensor using Chromatic White Light (CWL) with a lateral resolution up to 2 μm. The used FRT-MicroProf 200 CWL 600 measurement device is able to capture high-resolution intensity and topography images in an optical and contact-less way. In prior work, we have suggested to use 2D surface texture parameters to classify various materials, which was a novel approach in the field of criminalistic forensic using knowledge from surface appearance and a chromatic white light sensor. A meaningful and useful classification of different crime scene specific surfaces is not existent. In this work, we want to extend such considerations by the usage of fourteen 3D surface parameters, called 'Birmingham 14'. In our experiment we define these surface texture parameters and use them to classify ten different materials in this test set-up and create specific material classes. Further it is shown in first experiments, that some surface texture parameters are sensitive to separate fingerprints from carrier surfaces. So far, the use of surface roughness is mainly known within the framework of material quality control. The analysis and classification of the captured 3D-topography images from crime scenes is important for the adaptive preprocessing depending on the surface texture. The adaptive preprocessing in dependency of surface classification is necessary for precise detection because of the wide variety of surface textures. We perform a preliminary study in usage of these 3D surface texture parameters as feature for the fingerprint detection. In combination with a reference sample we show that surface texture parameters can be an indication for a fingerprint and can be a feature in latent fingerprint detection.

  3. Effective Quantification of the Paper Surface 3D Structure

    Fidjestøl, Svein

    2005-01-01

    This thesis covers the topic of image processing in relation to the segmentation and analysis of pores protruding the surface in the three dimensional surface structure of paper. The successful analysis of pores is related to a greater goal of relating such an analysis to the perceived quality of the surface of a paper sample. The first part of the thesis gives an introduction to the context of image processing in relation to paper research. Also, an overview of the image processing framewor...

  4. Cardiac C-arm computed tomography using a 3D + time ROI reconstruction method with spatial and temporal regularization

    Mory, Cyril, E-mail: cyril.mory@philips.com [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, F-69621 Villeurbanne Cedex (France); Philips Research Medisys, 33 rue de Verdun, 92156 Suresnes (France); Auvray, Vincent; Zhang, Bo [Philips Research Medisys, 33 rue de Verdun, 92156 Suresnes (France); Grass, Michael; Schäfer, Dirk [Philips Research, Röntgenstrasse 24–26, D-22335 Hamburg (Germany); Chen, S. James; Carroll, John D. [Department of Medicine, Division of Cardiology, University of Colorado Denver, 12605 East 16th Avenue, Aurora, Colorado 80045 (United States); Rit, Simon [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1 (France); Centre Léon Bérard, 28 rue Laënnec, F-69373 Lyon (France); Peyrin, Françoise [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, F-69621 Villeurbanne Cedex (France); X-ray Imaging Group, European Synchrotron, Radiation Facility, BP 220, F-38043 Grenoble Cedex (France); Douek, Philippe; Boussel, Loïc [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1 (France); Hospices Civils de Lyon, 28 Avenue du Doyen Jean Lépine, 69500 Bron (France)

    2014-02-15

    Purpose: Reconstruction of the beating heart in 3D + time in the catheter laboratory using only the available C-arm system would improve diagnosis, guidance, device sizing, and outcome control for intracardiac interventions, e.g., electrophysiology, valvular disease treatment, structural or congenital heart disease. To obtain such a reconstruction, the patient's electrocardiogram (ECG) must be recorded during the acquisition and used in the reconstruction. In this paper, the authors present a 4D reconstruction method aiming to reconstruct the heart from a single sweep 10 s acquisition. Methods: The authors introduce the 4D RecOnstructiOn using Spatial and TEmporal Regularization (short 4D ROOSTER) method, which reconstructs all cardiac phases at once, as a 3D + time volume. The algorithm alternates between a reconstruction step based on conjugate gradient and four regularization steps: enforcing positivity, averaging along time outside a motion mask that contains the heart and vessels, 3D spatial total variation minimization, and 1D temporal total variation minimization. Results: 4D ROOSTER recovers the different temporal representations of a moving Shepp and Logan phantom, and outperforms both ECG-gated simultaneous algebraic reconstruction technique and prior image constrained compressed sensing on a clinical case. It generates 3D + time reconstructions with sharp edges which can be used, for example, to estimate the patient's left ventricular ejection fraction. Conclusions: 4D ROOSTER can be applied for human cardiac C-arm CT, and potentially in other dynamic tomography areas. It can easily be adapted to other problems as regularization is decoupled from projection and back projection.

  5. A-mode ultrasound-based intra-femoral bone cement detection and 3D reconstruction in RTHR.

    Heger, Stefan; Mumme, Thorsten; Sellei, Richard; De La Fuente, Matias; Wirtz, Dieter-C; Radermacher, Klaus

    2007-05-01

    Due to the difficulty of determining the 3D boundary of the cement-bone interface in Revision Total Hip Replacement (RTHR), the removal of the distal intra-femoral bone cement can be a time-consuming and risky operation. Within the framework of computer- and robot-assisted cement removal, the principles and first results of an automatic detection and 3D surface reconstruction of the cement-bone boundary using A-mode ultrasound are described. Sound propagation time and attenuation of cement were determined considering different techniques for the preparation of bone cement, such as the use of a vacuum system (Optivac, Biomet). A laboratory setup using a rotating, standard 5-MHz transducer was developed. The prototype enables scanning of bisected cement-prepared femur samples in a 90 degrees rotation range along their rotation axis. For system evaluation ex vivo, the distal femur of a human cadaver was prepared with bone cement and drilled (Ø 10 mm) to simulate the prosthesis cavity in a first approximation. The sample was cut in half and CT scanned (0.24 mm resolution; 0.5 mm distance; 0.5 mm thickness), and 3D voxel models of the manually segmented bone cement were reconstructed, providing the ground truth. Afterwards, 90 degrees segments of each ex-vivo sample were scanned by the A-mode ultrasound system. To obtain better ultrasound penetration, we used coded signal excitation and pulse compression filtering. A-mode ultrasound signal detection, filtering and segmentation were accomplished fully automatically. Subsequently, 3D voxel models of each sample were calculated. Accuracy evaluation of the measured ultrasound data was performed by ICP matching of each ultrasound dataset ( approximately 8000 points) to the corresponding CT dataset and calculation of the residual median distance error between the corresponding datasets. Prior to each ICP matching, an initial pre-registration was calculated using prominent landmarks in the corresponding datasets. This method

  6. Low-amplitude craniofacial EMG power spectral density and 3D muscle reconstruction from MRI

    Lukas Wiedemann

    2015-03-01

    Full Text Available Improving EEG signal interpretation, specificity, and sensitivity is a primary focus of many current investigations, and the successful application of EEG signal processing methods requires a detailed knowledge of both the topography and frequency spectra of low-amplitude, high-frequency craniofacial EMG. This information remains limited in clinical research, and as such, there is no known reliable technique for the removal of these artifacts from EEG data. The results presented herein outline a preliminary investigation of craniofacial EMG high-frequency spectra and 3D MRI segmentation that offers insight into the development of an anatomically-realistic model for characterizing these effects. The data presented highlights the potential for confounding signal contribution from around 60 to 200 Hz, when observed in frequency space, from both low and high-amplitude EMG signals. This range directly overlaps that of both low γ (30-50 Hz and high γ (50-80 Hz waves, as defined traditionally in standatrd EEG measurements, and mainly with waves presented in dense-array EEG recordings. Likewise, average EMG amplitude comparisons from each condition highlights the similarities in signal contribution of low-activity muscular movements and resting, control conditions. In addition to the FFT analysis performed, 3D segmentation and reconstruction of the craniofacial muscles whose EMG signals were measured was successful. This recapitulation of the relevant EMG morphology is a crucial first step in developing an anatomical model for the isolation and removal of confounding low-amplitude craniofacial EMG signals from EEG data. Such a model may be eventually applied in a clinical setting to ultimately help to extend the use of EEG in various clinical roles.

  7. Low-Amplitude Craniofacial EMG Power Spectral Density and 3D Muscle Reconstruction from MRI.

    Wiedemann, Lukas; Chaberova, Jana; Edmunds, Kyle; Einarsdóttir, Guðrún; Ramon, Ceon; Gargiulo, Paolo

    2015-03-11

    Improving EEG signal interpretation, specificity, and sensitivity is a primary focus of many current investigations, and the successful application of EEG signal processing methods requires a detailed knowledge of both the topography and frequency spectra of low-amplitude, high-frequency craniofacial EMG. This information remains limited in clinical research, and as such, there is no known reliable technique for the removal of these artifacts from EEG data. The results presented herein outline a preliminary investigation of craniofacial EMG high-frequency spectra and 3D MRI segmentation that offers insight into the development of an anatomically-realistic model for characterizing these effects. The data presented highlights the potential for confounding signal contribution from around 60 to 200 Hz, when observed in frequency space, from both low and high-amplitude EMG signals. This range directly overlaps that of both low γ (30-50 Hz) and high γ (50-80 Hz) waves, as defined traditionally in standatrd EEG measurements, and mainly with waves presented in dense-array EEG recordings. Likewise, average EMG amplitude comparisons from each condition highlights the similarities in signal contribution of low-activity muscular movements and resting, control conditions. In addition to the FFT analysis performed, 3D segmentation and reconstruction of the craniofacial muscles whose EMG signals were measured was successful. This recapitulation of the relevant EMG morphology is a crucial first step in developing an anatomical model for the isolation and removal of confounding low-amplitude craniofacial EMG signals from EEG data. Such a model may be eventually applied in a clinical setting to ultimately help to extend the use of EEG in various clinical roles.

  8. Low-Amplitude Craniofacial EMG Power Spectral Density and 3D Muscle Reconstruction from MRI

    Wiedemann, Lukas; Chaberova, Jana; Edmunds, Kyle; Einarsdóttir, Guðrún; Ramon, Ceon

    2015-01-01

    Improving EEG signal interpretation, specificity, and sensitivity is a primary focus of many current investigations, and the successful application of EEG signal processing methods requires a detailed knowledge of both the topography and frequency spectra of low-amplitude, high-frequency craniofacial EMG. This information remains limited in clinical research, and as such, there is no known reliable technique for the removal of these artifacts from EEG data. The results presented herein outline a preliminary investigation of craniofacial EMG high-frequency spectra and 3D MRI segmentation that offers insight into the development of an anatomically-realistic model for characterizing these effects. The data presented highlights the potential for confounding signal contribution from around 60 to 200 Hz, when observed in frequency space, from both low and high-amplitude EMG signals. This range directly overlaps that of both low γ (30-50 Hz) and high γ (50-80 Hz) waves, as defined traditionally in standatrd EEG measurements, and mainly with waves presented in dense-array EEG recordings. Likewise, average EMG amplitude comparisons from each condition highlights the similarities in signal contribution of low-activity muscular movements and resting, control conditions. In addition to the FFT analysis performed, 3D segmentation and reconstruction of the craniofacial muscles whose EMG signals were measured was successful. This recapitulation of the relevant EMG morphology is a crucial first step in developing an anatomical model for the isolation and removal of confounding low-amplitude craniofacial EMG signals from EEG data. Such a model may be eventually applied in a clinical setting to ultimately help to extend the use of EEG in various clinical roles. PMID:26913150

  9. Using on-site liver 3-D reconstruction and volumetric calculations in split liver transplantation

    Trevor W Reichman; Brittan Y Fiorello; Ian Carmody; Humberto Bohorquez; Ari Cohen; John Seal; David Bruce; George E Loss

    2016-01-01

    BACKGROUND: Split liver transplantation increases the number of grafts available for transplantation. Pre-recovery assessment of liver graft volume is essential for selecting suit-able recipients. The purpose of this study was to determine the ability and feasibility of constructing a 3-D model to aid in surgical planning and to predict graft weight prior to anin situ division of the donor liver. METHODS: Over 11 months, 3-D volumetric reconstruction of 4 deceased donors was performed using Pathifnder Scout© liver volumetric software. Demographic, laboratory, operative, perioperative and survival data for these patients along with donor demographic data were collected prospectively and analyzed retrospectively. RESULTS: The average predicted weight of the grafts from the adult donors obtained from anin situ split procedure were 1130 g (930-1458 g) for the extended right lobe donors and 312 g (222-396 g) for left lateral segment grafts. Actual adult graft weight was 92% of the predicted weight for both the ex-tended right grafts and the left lateral segment grafts. The pre-dicted and actual graft weights for the pediatric donors were 176 g and 210 g for the left lateral segment grafts and 308 g and 280 g for the extended right lobe grafts, respectively. All grafts were transplanted except for the right lobe from the pediatric donors due to the small graft weight. CONCLUSIONS: On-site volumetric assessment of donors provides useful information for the planning of anin situ split and for selection of recipients. This information may expand the donor pool to recipients previously felt to be unsuitable due to donor and/or recipient weight.

  10. Fast generation of virtual X-ray images for reconstruction of 3D anatomy.

    Ehlke, Moritz; Ramm, Heiko; Lamecker, Hans; Hege, Hans-Christian; Zachow, Stefan

    2013-12-01

    We propose a novel GPU-based approach to render virtual X-ray projections of deformable tetrahedral meshes. These meshes represent the shape and the internal density distribution of a particular anatomical structure and are derived from statistical shape and intensity models (SSIMs). We apply our method to improve the geometric reconstruction of 3D anatomy (e.g. pelvic bone) from 2D X-ray images. For that purpose, shape and density of a tetrahedral mesh are varied and virtual X-ray projections are generated within an optimization process until the similarity between the computed virtual X-ray and the respective anatomy depicted in a given clinical X-ray is maximized. The OpenGL implementation presented in this work deforms and projects tetrahedral meshes of high resolution (200.000+ tetrahedra) at interactive rates. It generates virtual X-rays that accurately depict the density distribution of an anatomy of interest. Compared to existing methods that accumulate X-ray attenuation in deformable meshes, our novel approach significantly boosts the deformation/projection performance. The proposed projection algorithm scales better with respect to mesh resolution and complexity of the density distribution, and the combined deformation and projection on the GPU scales better with respect to the number of deformation parameters. The gain in performance allows for a larger number of cycles in the optimization process. Consequently, it reduces the risk of being stuck in a local optimum. We believe that our approach will improve treatments in orthopedics, where 3D anatomical information is essential.

  11. 3D Additive Construction with Regolith for Surface Systems Project

    National Aeronautics and Space Administration — Recent work in the NASA Kennedy Space Center (KSC) Surface Systems Office (NE-S) Swamp Works and at the University of Southern California (USC) under two...

  12. Surface functionalization of 3D glass-ceramic porous scaffolds for enhanced mineralization in vitro

    Ferraris, Sara; Vitale-Brovarone, Chiara; Bretcanu, Oana; Cassinelli, Clara; Vernè, Enrica

    2013-04-01

    Bone reconstruction after tissue loosening due to traumatic, pathological or surgical causes is in increasing demand. 3D scaffolds are a widely studied solution for supporting new bone growth. Bioactive glass-ceramic porous materials can offer a three-dimensional structure that is able to chemically bond to bone. The ability to surface modify these devices by grafting biologically active molecules represents a challenge, with the aim of stimulating physiological bone regeneration with both inorganic and organic signals. In this research work glass ceramic scaffolds with very high mechanical properties and moderate bioactivity have been functionalized with the enzyme alkaline phosphatase (ALP). The material surface was activated in order to expose hydroxyl groups. The activated surface was further grafted with ALP both via silanization and also via direct grafting to the surface active hydroxyl groups. Enzymatic activity of grafted samples were measured by means of UV-vis spectroscopy before and after ultrasonic washing in TRIS-HCl buffer solution. In vitro inorganic bioactivity was investigated by soaking the scaffolds after the different steps of functionalization in a simulated body fluid (SBF). SEM observations allowed the monitoring of the scaffold morphology and surface chemical composition after soaking in SBF. The presence of ALP enhanced the in vitro inorganic bioactivity of the tested material.

  13. Elimination of Gibbs and Nyquist-Shannon Phenomena in 3D Image Reconstruction

    Martišek, Dalibor

    2016-06-01

    Fracture surfaces are often modelled by Fourier two-dimensional (2D) series that can be converted into digital 3D reliefs mapping the morphology of solid surfaces. Such digital replicas may suffer from various artifacts when processed inappropriately. The Gibbs phenomenon and spatial aliasing are two of those artifacts that may devalue Fourier replicas. The Gibbs phenomenon involves the fact that Fourier sums overshoot at a jump discontinuity, and that this overshoot does not die out as the frequency increases. According to the Nyquist-Shannon sampling theorem spatial aliasing occurs when Fourier frequencies exceed the Nyquist critical frequency. In this paper it is shown how we can fully eliminate these unpleasant effects.

  14. 3D-printed haptic "reverse" models for preoperative planning in soft tissue reconstruction: a case report.

    Chae, Michael P; Lin, Frank; Spychal, Robert T; Hunter-Smith, David J; Rozen, Warren Matthew

    2015-02-01

    In reconstructive surgery, preoperative planning is essential for optimal functional and aesthetic outcome. Creating a three-dimensional (3D) model from two-dimensional (2D) imaging data by rapid prototyping has been used in industrial design for decades but has only recently been introduced for medical application. 3D printing is one such technique that is fast, convenient, and relatively affordable. In this report, we present a case in which a reproducible method for producing a 3D-printed "reverse model" representing a skin wound defect was used for flap design and harvesting. This comprised a 82-year-old man with an exposed ankle prosthesis after serial soft tissue debridements for wound infection. Soft tissue coverage and dead-space filling were planned with a composite radial forearm free flap (RFFF). Computed tomographic angiography (CTA) of the donor site (left forearm), recipient site (right ankle), and the left ankle was performed. 2D data from the CTA was 3D-reconstructed using computer software, with a 3D image of the left ankle used as a "control." A 3D model was created by superimposing the left and right ankle images, to create a "reverse image" of the defect, and printed using a 3D printer. The RFFF was thus planned and executed effectively, without complication. To our knowledge, this is the first report of a mechanism of calculating a soft tissue wound defect and producing a 3D model that may be useful for surgical planning. 3D printing and particularly "reverse" modeling may be versatile options in reconstructive planning, and have the potential for broad application.

  15. Joint Cross-Range Scaling and 3D Geometry Reconstruction of ISAR Targets Based on Factorization Method.

    Lei Liu; Feng Zhou; Xue-Ru Bai; Ming-Liang Tao; Zi-Jing Zhang

    2016-04-01

    Traditionally, the factorization method is applied to reconstruct the 3D geometry of a target from its sequential inverse synthetic aperture radar images. However, this method requires performing cross-range scaling to all the sub-images and thus has a large computational burden. To tackle this problem, this paper proposes a novel method for joint cross-range scaling and 3D geometry reconstruction of steadily moving targets. In this method, we model the equivalent rotational angular velocity (RAV) by a linear polynomial with time, and set its coefficients randomly to perform sub-image cross-range scaling. Then, we generate the initial trajectory matrix of the scattering centers, and solve the 3D geometry and projection vectors by the factorization method with relaxed constraints. After that, the coefficients of the polynomial are estimated from the projection vectors to obtain the RAV. Finally, the trajectory matrix is re-scaled using the estimated rotational angle, and accurate 3D geometry is reconstructed. The two major steps, i.e., the cross-range scaling and the factorization, are performed repeatedly to achieve precise 3D geometry reconstruction. Simulation results have proved the effectiveness and robustness of the proposed method.

  16. 3D reconstruction of the structure of a residual limb for customising the design of a prosthetic socket.

    Shuxian, Zheng; Wanhua, Zhao; Bingheng, Lu

    2005-01-01

    Aiming at overcoming the limitations of the plaster-casting method in traditional prosthetic socket fabrication, the idea of reconstructing the 3D models for bones and skin of the residual limb is proposed. Given the two-dimensional obtained image through CT scanning, using image processing and reverse engineering techniques, the 3D solid model of the residual limb can be successfully reconstructed. The new approach can reproduce both the internal and the external structure of the residual limb. It can moreover avoid making a positive mould by the way of manual modifications. In addition to this, it can provide a scientific basis for the individualization of prosthetic socket design.

  17. Persistent and automatic intraoperative 3D digitization of surfaces under dynamic magnifications of an operating microscope.

    Kumar, Ankur N; Miga, Michael I; Pheiffer, Thomas S; Chambless, Lola B; Thompson, Reid C; Dawant, Benoit M

    2015-01-01

    One of the major challenges impeding advancement in image-guided surgical (IGS) systems is the soft-tissue deformation during surgical procedures. These deformations reduce the utility of the patient's preoperative images and may produce inaccuracies in the application of preoperative surgical plans. Solutions to compensate for the tissue deformations include the acquisition of intraoperative tomographic images of the whole organ for direct displacement measurement and techniques that combines intraoperative organ surface measurements with computational biomechanical models to predict subsurface displacements. The later solution has the advantage of being less expensive and amenable to surgical workflow. Several modalities such as textured laser scanners, conoscopic holography, and stereo-pair cameras have been proposed for the intraoperative 3D estimation of organ surfaces to drive patient-specific biomechanical models for the intraoperative update of preoperative images. Though each modality has its respective advantages and disadvantages, stereo-pair camera approaches used within a standard operating microscope is the focus of this article. A new method that permits the automatic and near real-time estimation of 3D surfaces (at 1 Hz) under varying magnifications of the operating microscope is proposed. This method has been evaluated on a CAD phantom object and on full-length neurosurgery video sequences (∼1 h) acquired intraoperatively by the proposed stereovision system. To the best of our knowledge, this type of validation study on full-length brain tumor surgery videos has not been done before. The method for estimating the unknown magnification factor of the operating microscope achieves accuracy within 0.02 of the theoretical value on a CAD phantom and within 0.06 on 4 clinical videos of the entire brain tumor surgery. When compared to a laser range scanner, the proposed method for reconstructing 3D surfaces intraoperatively achieves root mean square

  18. 基于纹路的三维指纹模型重建算法%Ridge Based 3D Fingerprint Reconstruction Method

    梁小龙; 殷建平; 祝恩; 官群健

    2012-01-01

    三维指纹识别是近几年兴起的一种基于三维指纹模型进行指纹识别的新技术,能够克服传统接触式指纹识别中存在的纹路变形、残留纹路、对手指皮肤状况敏感等缺陷.基于多角度图像的三维指纹模型重建是整个识别过程中的一个关键步骤.提出了一种基于纹路的重建算法,算法重建的指纹模型直接包含纹路与细节点相关特征.相对于已有文献中将指纹表皮作为重建对象,算法重建结果更有助于特征提取等三维指纹识别后续过程.%Three-dimens