WorldWideScience

Sample records for 3d hierarchical computational

  1. 3D hierarchical computational model of wood as a cellular material with fibril reinforced, heterogeneous multiple layers

    DEFF Research Database (Denmark)

    Qing, Hai; Mishnaevsky, Leon

    2009-01-01

    A 3D hierarchical computational model of deformation and stiffness of wood, which takes into account the structures of wood at several scale levels (cellularity, multilayered nature of cell walls, composite-like structures of the wall layers) is developed. At the mesoscale, the softwood cell...... is presented as a 3D hexagon-shape-tube with multilayered walls. The layers in the softwood cell are considered as considered as composite reinforced by microfibrils (celluloses). The elastic properties of the layers are determined with Halpin–Tsai equations, and introduced into mesoscale finite element...... cellular model. With the use of the developed hierarchical model, the influence of the microstructure, including microfibril angles (MFAs, which characterizes the orientation of the cellulose fibrils with respect to the cell axis), the thickness of the cell wall, the shape of the cell cross...

  2. A Hierarchical Multiscale Particle Computational Method for Simulation of Nanoscale Flows on 3D Unstructured Grids

    Science.gov (United States)

    2009-08-14

    involving particle simu- lation of fluid flows at the mesoscale. The Smooth Dissipative Particle Dynamics (SDPD) method developed by Espanol and...coefficients in the SDPD model equations are given in Espanol and Revenga (2003), 30 2.1 SDPD Computational Implementation The SDPD model has been...pp. 786-793. 10 Espanol , P. and Revenga, M. Smoothed Dissipative Particle Dynamics. Physical Review, 2003, Vol. 67. 31 Liu G.R. and Liu, M.B

  3. Resilient 3D hierarchical architected metamaterials.

    Science.gov (United States)

    Meza, Lucas R; Zelhofer, Alex J; Clarke, Nigel; Mateos, Arturo J; Kochmann, Dennis M; Greer, Julia R

    2015-09-15

    Hierarchically designed structures with architectural features that span across multiple length scales are found in numerous hard biomaterials, like bone, wood, and glass sponge skeletons, as well as manmade structures, like the Eiffel Tower. It has been hypothesized that their mechanical robustness and damage tolerance stem from sophisticated ordering within the constituents, but the specific role of hierarchy remains to be fully described and understood. We apply the principles of hierarchical design to create structural metamaterials from three material systems: (i) polymer, (ii) hollow ceramic, and (iii) ceramic-polymer composites that are patterned into self-similar unit cells in a fractal-like geometry. In situ nanomechanical experiments revealed (i) a nearly theoretical scaling of structural strength and stiffness with relative density, which outperforms existing nonhierarchical nanolattices; (ii) recoverability, with hollow alumina samples recovering up to 98% of their original height after compression to ≥ 50% strain; (iii) suppression of brittle failure and structural instabilities in hollow ceramic hierarchical nanolattices; and (iv) a range of deformation mechanisms that can be tuned by changing the slenderness ratios of the beams. Additional levels of hierarchy beyond a second order did not increase the strength or stiffness, which suggests the existence of an optimal degree of hierarchy to amplify resilience. We developed a computational model that captures local stress distributions within the nanolattices under compression and explains some of the underlying deformation mechanisms as well as validates the measured effective stiffness to be interpreted as a metamaterial property.

  4. Mechanics of hierarchical 3-D nanofoams

    Science.gov (United States)

    Chen, Q.; Pugno, N. M.

    2012-01-01

    In this paper, we study the mechanics of new three-dimensional hierarchical open-cell foams, and, in particular, its Young's modulus and plastic strength. We incorporate the effects of the surface elasticity and surface residual stress in the linear elastic and plastic analyses. The results show that, as the cross-sectional dimension decreases, the influences of the surface effect on Young's modulus and plastic strength increase, and the surface effect makes the solid stiffer and stronger; similarly, as level n increases, these quantities approach to those of the classical theory as lower bounds.

  5. 3D surface reconstruction multi-scale hierarchical approaches

    CERN Document Server

    Bellocchio, Francesco; Ferrari, Stefano; Piuri, Vincenzo

    2012-01-01

    3D Surface Reconstruction: Multi-Scale Hierarchical Approaches presents methods to model 3D objects in an incremental way so as to capture more finer details at each step. The configuration of the model parameters, the rationale and solutions are described and discussed in detail so the reader has a strong understanding of the methodology. Modeling starts from data captured by 3D digitizers and makes the process even more clear and engaging. Innovative approaches, based on two popular machine learning paradigms, namely Radial Basis Functions and the Support Vector Machines, are also introduced

  6. 3D Printing of Hierarchical Silk Fibroin Structures.

    Science.gov (United States)

    Sommer, Marianne R; Schaffner, Manuel; Carnelli, Davide; Studart, André R

    2016-12-21

    Like many other natural materials, silk is hierarchically structured from the amino acid level up to the cocoon or spider web macroscopic structures. Despite being used industrially in a number of applications, hierarchically structured silk fibroin objects with a similar degree of architectural control as in natural structures have not been produced yet due to limitations in fabrication processes. In a combined top-down and bottom-up approach, we exploit the freedom in macroscopic design offered by 3D printing and the template-guided assembly of ink building blocks at the meso- and nanolevel to fabricate hierarchical silk porous materials with unprecedented structural control. Pores with tunable sizes in the range 40-350 μm are generated by adding sacrificial organic microparticles as templates to a silk fibroin-based ink. Commercially available wax particles or monodisperse polycaprolactone made by microfluidics can be used as microparticle templates. Since closed pores are generated after template removal, an ultrasonication treatment can optionally be used to achieve open porosity. Such pore templating particles can be further modified with nanoparticles to create a hierarchical template that results in porous structures with a defined nanotopography on the pore walls. The hierarchically porous silk structures obtained with this processing technique can potentially be utilized in various application fields from structural materials to thermal insulation to tissue engineering scaffolds.

  7. A 3D AgCl hierarchical superstructure synthesized by a wet chemical oxidation method.

    Science.gov (United States)

    Lou, Zaizhu; Huang, Baibiao; Ma, Xiangchao; Zhang, Xiaoyang; Qin, Xiaoyan; Wang, Zeyan; Dai, Ying; Liu, Yuanyuan

    2012-12-07

    A novel 3D AgCl hierarchical superstructure, with fast growth along the 〈111〉 directions of cubic seeds, is synthesized by using a wet chemical oxidation method. The morphological structures and the growth process are investigated by scanning electron microscopy and X-ray diffraction. The crystal structures are analyzed by their crystallographic orientations. The surface energy of AgCl facets {100}, {110}, and {111} with absorbance of Cl(-) ions is studied by density functional theory calculations. Based on the experimental and computational results, a plausible mechanism is proposed to illustrate the formation of the 3D AgCl hierarchical superstructures. With more active sites, the photocatalytic activity of the 3D AgCl hierarchical superstructures is better than those of concave and cubic ones in oxygen evolution under irradiation by visible light.

  8. Parametrizable cameras for 3D computational steering

    NARCIS (Netherlands)

    Mulder, J.D.; Wijk, J.J. van

    1997-01-01

    We present a method for the definition of multiple views in 3D interfaces for computational steering. The method uses the concept of a point-based parametrizable camera object. This concept enables a user to create and configure multiple views on his custom 3D interface in an intuitive graphical man

  9. Computer Modelling of 3D Geological Surface

    CERN Document Server

    Kodge, B G

    2011-01-01

    The geological surveying presently uses methods and tools for the computer modeling of 3D-structures of the geographical subsurface and geotechnical characterization as well as the application of geoinformation systems for management and analysis of spatial data, and their cartographic presentation. The objectives of this paper are to present a 3D geological surface model of Latur district in Maharashtra state of India. This study is undertaken through the several processes which are discussed in this paper to generate and visualize the automated 3D geological surface model of a projected area.

  10. 3D Computer Graphics and Nautical Charts

    OpenAIRE

    Porathe, Thomas

    2011-01-01

    This paper gives an overview of an ongoing project using real-time 3D visualization to display nautical charts in a way used by 3D computer games. By displaying the map in an egocentric perspective the need to make cognitively demanding mental rotations are suggested to be removed, leading to faster decision-making and less errors. Experimental results support this hypothesis. Practical tests with limited success have been performed this year.

  11. Facial reconstruction using 3-D computer graphics.

    Science.gov (United States)

    Vanezi, P; Vanezis, M; McCombe, G; Niblett, T

    2000-02-14

    Facial reconstruction using 3-D computer graphics is being used in our institute as a routine procedure in forensic cases as well as for skulls of historical and archaeological interest. Skull and facial data from living subjects is acquired using an optical laser scanning system. For the production of the reconstructed image, we employ facial reconstruction software which is constructed using the TCL/Tk scripting language, the latter making use of the C3D system. The computer image may then be exported to enable the production of a solid model, employing, for example, stereolithography. The image can also be modified within an identikit system which allows the addition of facial features as appropriate.

  12. [Computer-assisted 3D phonetography].

    Science.gov (United States)

    Neuschaefer-Rube, C; Klajman, S

    1996-10-01

    Profiles of fundamental frequency sound pressure levels and voice duration are measured separately in clinical practice. It was the aim of the present study to combine the two examinations, in order to estimate the relationship between pitch, sound pressure level and voice duration and to develop a new computer-assisted graph. A three-dimensional (3D) wireframe phonogram was constructed based on SPL profiles to obtain a general view of the parameters recorded. We have termed this "phonetography". Variable further projections were selected for the analysis of different aspects of parametric relationships. The results in 21 healthy volunteers and 4 patients with hyperfunctional dysphonias demonstrated that there were three typical figures of the 3D phonograms produced, depending on the relationship between voice duration when soft ("piano") compared to loud ("forte"). In one-third of the healthy volunteers, the values of the piano voice duration were greater than those of forte for almost all pitches examined. In two-thirds of the healthy subjects the values of forte voice duration were partly greater, as were those of piano voice duration. All of the patients showed voice duration values greater for forte than for piano. The results of the study demonstrate that the 3D phonogram is a useful tool for obtaining new insights into various relationships of voice parameters.

  13. Practical algorithms for 3D computer graphics

    CERN Document Server

    Ferguson, R Stuart

    2013-01-01

    ""A valuable book to accompany any course that mixes the theory and practice of 3D graphics. The book's web site has many useful programs and code samples.""-Karen Rafferty, Queen's University, Belfast""The topics covered by this book are backed by the OpenFX modeling and animation software. This is a big plus in that it provides a practical perspective and encourages experimentation. … [This] will offer students a more interesting and hands-on learning experience, especially for those wishing to pursue a career in computer game development.""-Naganand Madhavapeddy, GameDeveloper>

  14. Compression of 3D Point Clouds Using a Region-Adaptive Hierarchical Transform.

    Science.gov (United States)

    De Queiroz, Ricardo; Chou, Philip A

    2016-06-01

    In free-viewpoint video, there is a recent trend to represent scene objects as solids rather than using multiple depth maps. Point clouds have been used in computer graphics for a long time and with the recent possibility of real time capturing and rendering, point clouds have been favored over meshes in order to save computation. Each point in the cloud is associated with its 3D position and its color. We devise a method to compress the colors in point clouds which is based on a hierarchical transform and arithmetic coding. The transform is a hierarchical sub-band transform that resembles an adaptive variation of a Haar wavelet. The arithmetic encoding of the coefficients assumes Laplace distributions, one per sub-band. The Laplace parameter for each distribution is transmitted to the decoder using a custom method. The geometry of the point cloud is encoded using the well-established octtree scanning. Results show that the proposed solution performs comparably to the current state-of-the-art, in many occasions outperforming it, while being much more computationally efficient. We believe this work represents the state-of-the-art in intra-frame compression of point clouds for real-time 3D video.

  15. Hierarchical Task Network Prototyping In Unity3d

    Science.gov (United States)

    2016-06-01

    in a video game application. Each application has an agent which can be programmed using one of several major pro - gramming languages. The user can...visually debug. Here we present a solution for prototyping HTNs by extending an existing commercial implementation of Behavior Trees within the Unity3D game ...HTN, dynamic behaviors, behavior prototyping, agent-based simulation, entity-level combat model, game engine, discrete event simulation, virtual

  16. Multi-Modality Vertebra Recognition in Arbitrary Views Using 3D Deformable Hierarchical Model.

    Science.gov (United States)

    Cai, Yunliang; Osman, Said; Sharma, Manas; Landis, Mark; Li, Shuo

    2015-08-01

    Computer-aided diagnosis of spine problems relies on the automatic identification of spine structures in images. The task of automatic vertebra recognition is to identify the global spine and local vertebra structural information such as spine shape, vertebra location and pose. Vertebra recognition is challenging due to the large appearance variations in different image modalities/views and the high geometric distortions in spine shape. Existing vertebra recognitions are usually simplified as vertebrae detections, which mainly focuses on the identification of vertebra locations and labels but cannot support further spine quantitative assessment. In this paper, we propose a vertebra recognition method using 3D deformable hierarchical model (DHM) to achieve cross-modality local vertebra location+pose identification with accurate vertebra labeling, and global 3D spine shape recovery. We recast vertebra recognition as deformable model matching, fitting the input spine images with the 3D DHM via deformations. The 3D model-matching mechanism provides a more comprehensive vertebra location+pose+label simultaneous identification than traditional vertebra location+label detection, and also provides an articulated 3D mesh model for the input spine section. Moreover, DHM can conduct versatile recognition on volume and multi-slice data, even on single slice. Experiments show our method can successfully extract vertebra locations, labels, and poses from multi-slice T1/T2 MR and volume CT, and can reconstruct 3D spine model on different image views such as lumbar, cervical, even whole spine. The resulting vertebra information and the recovered shape can be used for quantitative diagnosis of spine problems and can be easily digitalized and integrated in modern medical PACS systems.

  17. Spontaneous Electroless Galvanic Cell Deposition of 3D Hierarchical and Interlaced S-M-S Heterostructures.

    Science.gov (United States)

    Tan, Chuan Fu; Azmansah, Siti Aishah Bte; Zhu, Hai; Xu, Qing-Hua; Ho, Ghim Wei

    2017-01-01

    One-pot electroless galvanic cell deposition of a 3D hierarchical semiconductor-metal-semiconductor interlaced nanoarray is demonstrated. The fabricated 3D photoanode deviates from the typical planar geometry, and aims to optimize the effective surface area for light harvesting and long-range charge transfer-collection pathways.

  18. Transfer printing of 3D hierarchical gold structures using a sequentially imprinted polymer stamp

    Energy Technology Data Exchange (ETDEWEB)

    Zhang Fengxiang; Low, Hong Yee [Institute of Materials Research and Engineering, A-STAR - Agency for Science, Technology and Research, 3 Research Link, 117602 (Singapore)], E-mail: hy-low@imre.a-star.edu.sg

    2008-10-15

    Complex three-dimensional (3D) hierarchical structures on polymeric materials are fabricated through a process referred to as sequential imprinting. In this work, the sequentially imprinted polystyrene film is used as a soft stamp to replicate hierarchical structures onto gold (Au) films, and the Au structures are then transferred to a substrate by transfer printing at an elevated temperature and pressure. Continuous and isolated 3D structures can be selectively fabricated with the assistance of thermo-mechanical deformation of the polymer stamp. Hierarchical Au structures are achieved without the need for a corresponding three-dimensionally patterned mold.

  19. Infra Red 3D Computer Mouse

    DEFF Research Database (Denmark)

    Harbo, Anders La-Cour; Stoustrup, Jakob

    2000-01-01

    of bandwidth, the signals are designed by means of the wavelet and the Rudin-Shapiro transforms. This also allows for easy separation of simultaneously made measurements. The measured intensities are converted to an 3D position by a neural net. The principle also applies to other applications, for instance...

  20. Computer animation for articulated 3D characters

    NARCIS (Netherlands)

    Kiss, S.

    2002-01-01

    We present a review of the computer animation literature, mainly concentrating on articulated characters and at least some degree of interactivity or real time simulation. Advances in dierent techniques such as key-frame, motion capture (also known as mocap), dynamics, inverse kinematics (IK), contr

  1. Computer Animation for Articulated 3D Characters

    NARCIS (Netherlands)

    Kiss, S.

    2002-01-01

    We present a review of the computer animation literature, mainly concentrating on articulated characters and at least some degree of interactivity or real time simulation. Advances in dierent techniques such as key-frame, motion capture (also known as mocap), dynamics, inverse kinematics (IK),

  2. CASTLE3D - A Computer Aided System for Labelling Archaeological Excavations in 3D

    Science.gov (United States)

    Houshiar, H.; Borrmann, D.; Elseberg, J.; Nüchter, A.; Näth, F.; Winkler, S.

    2015-08-01

    Documentation of archaeological excavation sites with conventional methods and tools such as hand drawings, measuring tape and archaeological notes is time consuming. This process is prone to human errors and the quality of the documentation depends on the qualification of the archaeologist on site. Use of modern technology and methods in 3D surveying and 3D robotics facilitate and improve this process. Computer-aided systems and databases improve the documentation quality and increase the speed of data acquisition. 3D laser scanning is the state of the art in modelling archaeological excavation sites, historical sites and even entire cities or landscapes. Modern laser scanners are capable of data acquisition of up to 1 million points per second. This provides a very detailed 3D point cloud of the environment. 3D point clouds and 3D models of an excavation site provide a better representation of the environment for the archaeologist and for documentation. The point cloud can be used both for further studies on the excavation and for the presentation of results. This paper introduces a Computer aided system for labelling archaeological excavations in 3D (CASTLE3D). Consisting of a set of tools for recording and georeferencing the 3D data from an excavation site, CASTLE3D is a novel documentation approach in industrial archaeology. It provides a 2D and 3D visualisation of the data and an easy-to-use interface that enables the archaeologist to select regions of interest and to interact with the data in both representations. The 2D visualisation and a 3D orthogonal view of the data provide cuts of the environment that resemble the traditional hand drawings. The 3D perspective view gives a realistic view of the environment. CASTLE3D is designed as an easy-to-use on-site semantic mapping tool for archaeologists. Each project contains a predefined set of semantic information that can be used to label findings in the data. Multiple regions of interest can be joined under

  3. In-home hierarchical posture classification with a time-of-flight 3D sensor.

    Science.gov (United States)

    Diraco, Giovanni; Leone, Alessandro; Siciliano, Pietro

    2014-01-01

    A non-invasive technique for posture classification suitable to be used in several in-home scenarios is proposed and preliminary validation results are presented. 3D point cloud sequences were acquired using a single time-of-flight sensor working in a privacy preserving modality and they were processed with a low power embedded PC. In order to satisfy different application requirements (e.g. covered distance range, processing speed and discrimination capabilities), a twofold discrimination approach was investigated in which features were hierarchically arranged from coarse to fine by exploiting both topological and volumetric representations. The topological representation encoded the intrinsic topology of the body's shape using a skeleton-based structure, thus guaranteeing invariance to scale, rotations and postural changes and achieving a high level of detail with a moderate computational cost. On the other hand, using the volumetric representation features were described in terms of 3D cylindrical histograms working within a wider range of distances in a faster way and also guaranteeing good invariance properties. The discrimination capabilities were evaluated in four different real-home scenarios related with the fields of ambient assisted living and homecare, namely "dangerous event detection", "anomalous behaviour detection", "activities recognition" and "natural human-ambient interaction". For each mentioned scenario, the discrimination capabilities were evaluated in terms of invariance to viewpoint changes, representation capabilities and classification performance, achieving promising results. The two feature representation approaches exhibited complementary characteristics showing high reliability with classification rates greater than 97%. Copyright © 2013 Elsevier B.V. All rights reserved.

  4. Automatic Plant Annotation Using 3D Computer Vision

    DEFF Research Database (Denmark)

    Nielsen, Michael

    in active shape modeling of weeds for weed detection. Occlusion and overlapping leaves were main problems for this kind of work. Using 3D computer vision it was possible to separate overlapping crop leaves from weed leaves using the 3D information from the disparity maps. The results of the 3D......In this thesis 3D reconstruction was investigated for application in precision agriculture where previous work focused on low resolution index maps where each pixel represents an area in the field and the index represents an overall crop status in that area. 3D reconstructions of plants would allow...... for more detailed descriptions of the state of the crops analogous to the way humans evaluate crop health, i.e. by looking at the canopy structure and check for discolorations at specific locations on the plants. Previous research in 3D reconstruction methods based on cameras has focused on rigid...

  5. Parallel computing helps 3D depth imaging, processing

    Energy Technology Data Exchange (ETDEWEB)

    Nestvold, E. O. [IBM, Houston, TX (United States); Su, C. B. [IBM, Dallas, TX (United States); Black, J. L. [Landmark Graphics, Denver, CO (United States); Jack, I. G. [BP Exploration, London (United Kingdom)

    1996-10-28

    The significance of 3D seismic data in the petroleum industry during the past decade cannot be overstated. Having started as a technology too expensive to be utilized except by major oil companies, 3D technology is now routinely used by independent operators in the US and Canada. As with all emerging technologies, documentation of successes has been limited. There are some successes, however, that have been summarized in the literature in the recent past. Key technological developments contributing to this success have been major advances in RISC workstation technology, 3D depth imaging, and parallel computing. This article presents the basic concepts of parallel seismic computing, showing how it impacts both 3D depth imaging and more-conventional 3D seismic processing.

  6. Hierarchical storage and visualization of real-time 3D data

    Science.gov (United States)

    Parry, Mitchell; Hannigan, Brendan; Ribarsky, William; Shaw, Christopher D.; Faust, Nickolas L.

    2001-08-01

    In this paper 'real-time 3D data' refers to volumetric data that are acquired and used as they are produced. Large scale, real-time data are difficult to store and analyze, either visually or by some other means, within the time frames required. Yet this is often quite important to do when decision-makers must receive and quickly act on new information. An example is weather forecasting, where forecasters must act on information received on severe storm development and movement. To meet the real-time requirements crude heuristics are often used to gather information from the original data. This is in spite of the fact that better and better real-time data are becoming available, the full use of which could significantly improve decisions. The work reported here addresses these issues by providing comprehensive data acquisition, analysis, and storage components with time budgets for the data management of each component. These components are put into a global geospatial hierarchical structure. The volumetric data are placed into this global structure, and it is shown how levels of detail can be derived and used within this structure. A volumetric visualization procedure is developed that conforms to the hierarchical structure and uses the levels of detail. These general methods are focused on the specific case of the VGIS global hierarchical structure and rendering system,. The real-time data considered are from collections of time- dependent 3D Doppler radars although the methods described here apply more generally to time-dependent volumetric data. This paper reports on the design and construction of the above hierarchical structures and volumetric visualizations. It also reports result for the specific application of 3D Doppler radar displayed over photo textured terrain height fields. Results are presented results for the specific application of 3D Doppler radar displayed over photo textured terrain height fields. Results are presented for display of time

  7. Recent Advances in Unconventional Lithography for Challenging 3D Hierarchical Structures and Their Applications

    Directory of Open Access Journals (Sweden)

    Jong Uk Kim

    2016-01-01

    Full Text Available In nanoscience and nanotechnology, nanofabrication is critical. Among the required processes for nanofabrication, lithography is one of core issues. Although conventional photolithography with recent remarkable improvement has contributed to the industry during the past few decades, fabrication of 3-dimensional (3D nanostructure is still challenging. In this review, we summarize recent advances for the construction of 3D nanostructures by unconventional lithography and the combination of two top-down approaches or top-down and bottom-up approaches. We believe that the 3D hierarchical nanostructures described here will have a broad range of applications having adaptable levels of functional integration of precisely controlled nanoarchitectures that are required by not only academia, but also industry.

  8. Design for scalability in 3D computer graphics architectures

    DEFF Research Database (Denmark)

    Holten-Lund, Hans Erik

    2002-01-01

    This thesis describes useful methods and techniques for designing scalable hybrid parallel rendering architectures for 3D computer graphics. Various techniques for utilizing parallelism in a pipelines system are analyzed. During the Ph.D study a prototype 3D graphics architecture named Hybris has...... been developed. Hybris is a prototype rendering architeture which can be tailored to many specific 3D graphics applications and implemented in various ways. Parallel software implementations for both single and multi-processor Windows 2000 system have been demonstrated. Working hardware...... as a case study and an application of the Hybris graphics architecture....

  9. Practical rendering and computation with Direct3D 11

    CERN Document Server

    Zink, Jason; Hoxley, Jack

    2011-01-01

    Practical Rendering and Computation with Direct3D 11 packs in documentation and in-depth coverage of basic and high-level concepts related to using Direct 3D 11 and is a top pick for any serious programming collection. … perfect for a wide range of users. Any interested in computation and multicore models will find this packed with examples and technical applications.-Midwest Book Review, October 2011The authors have generously provided us with an optimal blend of concepts and philosophy, illustrative figures to clarify the more difficult points, and source code fragments to make the ideas con

  10. 3D measurement system based on computer-generated gratings

    Science.gov (United States)

    Zhu, Yongjian; Pan, Weiqing; Luo, Yanliang

    2010-08-01

    A new kind of 3D measurement system has been developed to achieve the 3D profile of complex object. The principle of measurement system is based on the triangular measurement of digital fringe projection, and the fringes are fully generated from computer. Thus the computer-generated four fringes form the data source of phase-shifting 3D profilometry. The hardware of system includes the computer, video camera, projector, image grabber, and VGA board with two ports (one port links to the screen, another to the projector). The software of system consists of grating projection module, image grabbing module, phase reconstructing module and 3D display module. A software-based synchronizing method between grating projection and image capture is proposed. As for the nonlinear error of captured fringes, a compensating method is introduced based on the pixel-to-pixel gray correction. At the same time, a least square phase unwrapping is used to solve the problem of phase reconstruction by using the combination of Log Modulation Amplitude and Phase Derivative Variance (LMAPDV) as weight. The system adopts an algorithm from Matlab Tool Box for camera calibration. The 3D measurement system has an accuracy of 0.05mm. The execution time of system is 3~5s for one-time measurement.

  11. A Hierarchical Building Segmentation in Digital Surface Models for 3D Reconstruction

    Directory of Open Access Journals (Sweden)

    Yiming Yan

    2017-01-01

    Full Text Available In this study, a hierarchical method for segmenting buildings in a digital surface model (DSM, which is used in a novel framework for 3D reconstruction, is proposed. Most 3D reconstructions of buildings are model-based. However, the limitations of these methods are overreliance on completeness of the offline-constructed models of buildings, and the completeness is not easily guaranteed since in modern cities buildings can be of a variety of types. Therefore, a model-free framework using high precision DSM and texture-images buildings was introduced. There are two key problems with this framework. The first one is how to accurately extract the buildings from the DSM. Most segmentation methods are limited by either the terrain factors or the difficult choice of parameter-settings. A level-set method are employed to roughly find the building regions in the DSM, and then a recently proposed ‘occlusions of random textures model’ are used to enhance the local segmentation of the buildings. The second problem is how to generate the facades of buildings. Synergizing with the corresponding texture-images, we propose a roof-contour guided interpolation of building facades. The 3D reconstruction results achieved by airborne-like images and satellites are compared. Experiments show that the segmentation method has good performance, and 3D reconstruction is easily performed by our framework, and better visualization results can be obtained by airborne-like images, which can be further replaced by UAV images.

  12. 3D artefact for concurrent scale calibration in Computed Tomography

    DEFF Research Database (Denmark)

    Stolfi, Alessandro; De Chiffre, Leonardo

    2016-01-01

    A novel artefact for calibration of the scale in 3D X-ray Computed Tomography (CT) is presented. The artefact comprises a carbon fibre tubular structure on which a number of reference ruby spheres are glued. The artefact is positioned and scanned together with the workpiece inside the CT scanner ...

  13. Superquadric Based Hierarchical Reconstruction for Virtualizing Free Form Objects from 3D Data

    Institute of Scientific and Technical Information of China (English)

    LIU Weibin; YUAN Baozong

    2001-01-01

    The superquadric description is usedin modeling the virtual objects in AVR (from ActualReality to Virtual Reality).However,due to the in-trinsic property,the superquadric and its deforma-tion extensions (DSQ) are not flexible enough to de-scribe precisely the complex objects with asymmetryand free form surface.To solve the problem,a hierar-chical reconstruction approach in AVR for virtualizingthe objects with superquadric based models from 3Ddata is developed.Firstly,an initial approximation isproduced by a superquadric fit to the 3D data.Then,the crude superquadric fit is refined by fitting theresidue (distance map) with global and local DirectManipulation of Free-Form Deformation (DMFFD).The key elements of the hierarchical method,includ-ing superquadric fit to 3D data,mathematical detailsand the recursive-fitting algorithm for DMFFD,com-putation of distance maps,adaptive refinement anddecimation of polygon mesh under DMFFD,are pro-posed.An implementation example of hierarchicalreconstruction is presented.The proposed approachis shown competent and efficient for virtualizing thecomplex objects into virtual environment.

  14. A Hierarchical Optimization Algorithm Based on GPU for Real-Time 3D Reconstruction

    Science.gov (United States)

    Lin, Jin-hua; Wang, Lu; Wang, Yan-jie

    2017-06-01

    In machine vision sensing system, it is important to realize high-quality real-time 3D reconstruction in large-scale scene. The recent online approach performed well, but scaling up the reconstruction, it causes pose estimation drift, resulting in the cumulative error, usually requiring a large number of off-line operation to completely correct the error, reducing the reconstruction performance. In order to optimize the traditional volume fusion method and improve the old frame-to-frame pose estimation strategy, this paper presents a real-time CPU to Graphic Processing Unit reconstruction system. Based on a robust camera pose estimation strategy, the algorithm fuses all the RGB-D input values into an effective hierarchical optimization framework, and optimizes each frame according to the global camera attitude, eliminating the serious dependence on the tracking timeliness and continuously tracking globally optimized frames. The system estimates the global optimization of gestures (bundling) in real-time, supports for robust tracking recovery (re-positioning), and re-estimation of large-scale 3D scenes to ensure global consistency. It uses a set of sparse corresponding features, geometric and ray matching functions in one of the parallel optimization systems. The experimental results show that the average reconstruction time is 415 ms per frame, the ICP pose is estimated 20 times in 100.0 ms. For large scale 3D reconstruction scene, the system performs well in online reconstruction area, keeping the reconstruction accuracy at the same time.

  15. NASA's 3D Flight Computer for Space Applications

    Science.gov (United States)

    Alkalai, Leon

    2000-01-01

    The New Millennium Program (NMP) Integrated Product Development Team (IPDT) for Microelectronics Systems was planning to validate a newly developed 3D Flight Computer system on its first deep-space flight, DS1, launched in October 1998. This computer, developed in the 1995-97 time frame, contains many new computer technologies previously never used in deep-space systems. They include: advanced 3D packaging architecture for future low-mass and low-volume avionics systems; high-density 3D packaged chip-stacks for both volatile and non-volatile mass memory: 400 Mbytes of local DRAM memory, and 128 Mbytes of Flash memory; high-bandwidth Peripheral Component Interface (Per) local-bus with a bridge to VME; high-bandwidth (20 Mbps) fiber-optic serial bus; and other attributes, such as standard support for Design for Testability (DFT). Even though this computer system did not complete on time for delivery to the DS1 project, it was an important development along a technology roadmap towards highly integrated and highly miniaturized avionics systems for deep-space applications. This continued technology development is now being performed by NASA's Deep Space System Development Program (also known as X2000) and within JPL's Center for Integrated Space Microsystems (CISM).

  16. Computer Graphics Teaching Support using X3D: Extensible 3D Graphics for Web Authors

    OpenAIRE

    Brutzman, Don

    2008-01-01

    X3D is the ISO-standard scene-graph language for interactive 3D graphics on the Web. A new course is available for teaching the fundamentals of 3D graphics using Extensible 3D (X3D). Resources include a detailed textbook, an authoring tool, hundreds of example scenes, and detailed slidesets covering each chapter. The published book is commercially available, while all other course-module resources are provided online free under open-source licenses. Numerous other commercial and o...

  17. Advanced computational tools for 3-D seismic analysis

    Energy Technology Data Exchange (ETDEWEB)

    Barhen, J.; Glover, C.W.; Protopopescu, V.A. [Oak Ridge National Lab., TN (United States)] [and others

    1996-06-01

    The global objective of this effort is to develop advanced computational tools for 3-D seismic analysis, and test the products using a model dataset developed under the joint aegis of the United States` Society of Exploration Geophysicists (SEG) and the European Association of Exploration Geophysicists (EAEG). The goal is to enhance the value to the oil industry of the SEG/EAEG modeling project, carried out with US Department of Energy (DOE) funding in FY` 93-95. The primary objective of the ORNL Center for Engineering Systems Advanced Research (CESAR) is to spearhead the computational innovations techniques that would enable a revolutionary advance in 3-D seismic analysis. The CESAR effort is carried out in collaboration with world-class domain experts from leading universities, and in close coordination with other national laboratories and oil industry partners.

  18. 3D Nearest Neighbour Search Using a Clustered Hierarchical Tree Structure

    DEFF Research Database (Denmark)

    Suhaibah, A.; Uznir, U.; Antón Castro, Francesc/François

    2016-01-01

    , with the immense number of urban datasets, the retrieval and analysis of nearest neighbour information and their efficiency will become more complex and crucial. In this paper, we present a technique to retrieve nearest neighbour information in 3D space using a clustered hierarchical tree structure. Based on our...... findings, the proposed approach substantially showed an improvement of response time analysis compared to existing approaches of spatial access methods in databases. The query performance was tested using a dataset consisting of 500,000 point locations building and franchising unit. The results...... of the franchise unit will be located or is the franchise unit located is at the best level for visibility purposes. One of the common used analyses used for retrieving the surrounding information is Nearest Neighbour (NN) analysis. It uses a point location and identifies the surrounding neighbours. However...

  19. 3D Pharmacophore, hierarchical methods, and 5-HT4 receptor binding data.

    Science.gov (United States)

    Varin, Thibault; Saettel, Nicolas; Villain, Jonathan; Lesnard, Aurelien; Dauphin, François; Bureau, Ronan; Rault, Sylvain

    2008-10-01

    5-Hydroxytryptamine subtype-4 (5-HT(4)) receptors have stimulated considerable interest amongst scientists and clinicians owing to their importance in neurophysiology and potential as therapeutic targets. A comparative analysis of hierarchical methods applied to data from one thousand 5-HT(4) receptor-ligand binding interactions was carried out. The chemical structures were described as chemical and pharmacophore fingerprints. The definitions of indices, related to the quality of the hierarchies in being able to distinguish between active and inactive compounds, revealed two interesting hierarchies with the Unity (1 active cluster) and pharmacophore fingerprints (4 active clusters). The results of this study also showed the importance of correct choice of metrics as well as the effectiveness of a new alternative of the Ward clustering algorithm named Energy (Minimum E-Distance method). In parallel, the relationship between these classifications and a previously defined 3D 5-HT(4) antagonist pharmacophore was established.

  20. 3D computer visualization and animation of CANDU reactor core

    Energy Technology Data Exchange (ETDEWEB)

    Qian, T.; Echlin, M.; Tonner, P.; Sur, B. [Atomic Energy of Canada Limited, Chalk River, Ontario (Canada)

    1999-07-01

    Three-dimensional (3D) computer visualization and animation models of typical CANDU reactor cores (Darlington, Point Lepreau) have been developed using world-wide-web (WWW) browser based tools: JavaScript, hyper-text-markup language (HTML) and virtual reality modeling language (VRML). The 3D models provide three-dimensional views of internal control and monitoring structures in the reactor core, such as fuel channels, flux detectors, liquid zone controllers, zone boundaries, shutoff rods, poison injection tubes, ion chambers. Animations have been developed based on real in-core flux detector responses and rod position data from reactor shutdown. The animations show flux changing inside the reactor core with the drop of shutoff rods and/or the injection of liquid poison. The 3D models also provide hypertext links to documents giving specifications and historical data for particular components. Data in HTML format (or other format such as PDF, etc.) can be shown in text, tables, plots, drawings, etc., and further links to other sources of data can also be embedded. This paper summarizes the use of these WWW browser based tools, and describes the resulting 3D reactor core static and dynamic models. Potential applications of the models are discussed. (author)

  1. Computational Challenges of 3D Radiative Transfer in Atmospheric Models

    Science.gov (United States)

    Jakub, Fabian; Bernhard, Mayer

    2017-04-01

    The computation of radiative heating and cooling rates is one of the most expensive components in todays atmospheric models. The high computational cost stems not only from the laborious integration over a wide range of the electromagnetic spectrum but also from the fact that solving the integro-differential radiative transfer equation for monochromatic light is already rather involved. This lead to the advent of numerous approximations and parameterizations to reduce the cost of the solver. One of the most prominent one is the so called independent pixel approximations (IPA) where horizontal energy transfer is neglected whatsoever and radiation may only propagate in the vertical direction (1D). Recent studies implicate that the IPA introduces significant errors in high resolution simulations and affects the evolution and development of convective systems. However, using fully 3D solvers such as for example MonteCarlo methods is not even on state of the art supercomputers feasible. The parallelization of atmospheric models is often realized by a horizontal domain decomposition, and hence, horizontal transfer of energy necessitates communication. E.g. a cloud's shadow at a low zenith angle will cast a long shadow and potentially needs to communication through a multitude of processors. Especially light in the solar spectral range may travel long distances through the atmosphere. Concerning highly parallel simulations, it is vital that 3D radiative transfer solvers put a special emphasis on parallel scalability. We will present an introduction to intricacies computing 3D radiative heating and cooling rates as well as report on the parallel performance of the TenStream solver. The TenStream is a 3D radiative transfer solver using the PETSc framework to iteratively solve a set of partial differential equation. We investigate two matrix preconditioners, (a) geometric algebraic multigrid preconditioning(MG+GAMG) and (b) block Jacobi incomplete LU (ILU) factorization. The

  2. Dynamic 3D computed tomography scanner for vascular imaging

    Science.gov (United States)

    Lee, Mark K.; Holdsworth, David W.; Fenster, Aaron

    2000-04-01

    A 3D dynamic computed-tomography (CT) scanner was developed for imaging objects undergoing periodic motion. The scanner system has high spatial and sufficient temporal resolution to produce quantitative tomographic/volume images of objects such as excised arterial samples perfused under physiological pressure conditions and enables the measurements of the local dynamic elastic modulus (Edyn) of the arteries in the axial and longitudinal directions. The system was comprised of a high resolution modified x-ray image intensifier (XRII) based computed tomographic system and a computer-controlled cardiac flow simulator. A standard NTSC CCD camera with a macro lens was coupled to the electro-optically zoomed XRII to acquire dynamic volumetric images. Through prospective cardiac gating and computer synchronized control, a time-resolved sequence of 20 mm thick high resolution volume images of porcine aortic specimens during one simulated cardiac cycle were obtained. Performance evaluation of the scanners illustrated that tomographic images can be obtained with resolution as high as 3.2 mm-1 with only a 9% decrease in the resolution for objects moving at velocities of 1 cm/s in 2D mode and static spatial resolution of 3.55 mm-1 with only a 14% decrease in the resolution in 3D mode for objects moving at a velocity of 10 cm/s. Application of the system for imaging of intact excised arterial specimens under simulated physiological flow/pressure conditions enabled measurements of the Edyn of the arteries with a precision of +/- kPa for the 3D scanner. Evaluation of the Edyn in the axial and longitudinal direction produced values of 428 +/- 35 kPa and 728 +/- 71 kPa, demonstrating the isotropic and homogeneous viscoelastic nature of the vascular specimens. These values obtained from the Dynamic CT systems were not statistically different (p less than 0.05) from the values obtained by standard uniaxial tensile testing and volumetric measurements.

  3. Pose Estimation using a Hierarchical 3D Representation of Contours and Surfaces

    DEFF Research Database (Denmark)

    Buch, Anders Glent; Kraft, Dirk; Kämäräinen, Joni-Kristian

    2013-01-01

    We present a system for detecting the pose of rigid objects using texture and contour information. From a stereo image view of a scene, a sparse hierarchical scene representation is reconstructed using an early cognitive vision system. We define an object model in terms of a simple context...... descriptor of the contour and texture features to provide a sparse, yet descriptive object representation. Using our descriptors, we do a search in the correspondence space to perform outlier removal and compute the object pose. We perform an extensive evaluation of our approach with stereo images...

  4. Computing Radiative Transfer in a 3D Medium

    Science.gov (United States)

    Von Allmen, Paul; Lee, Seungwon

    2012-01-01

    A package of software computes the time-dependent propagation of a narrow laser beam in an arbitrary three- dimensional (3D) medium with absorption and scattering, using the transient-discrete-ordinates method and a direct integration method. Unlike prior software that utilizes a Monte Carlo method, this software enables simulation at very small signal-to-noise ratios. The ability to simulate propagation of a narrow laser beam in a 3D medium is an improvement over other discrete-ordinate software. Unlike other direct-integration software, this software is not limited to simulation of propagation of thermal radiation with broad angular spread in three dimensions or of a laser pulse with narrow angular spread in two dimensions. Uses for this software include (1) computing scattering of a pulsed laser beam on a material having given elastic scattering and absorption profiles, and (2) evaluating concepts for laser-based instruments for sensing oceanic turbulence and related measurements of oceanic mixed-layer depths. With suitable augmentation, this software could be used to compute radiative transfer in ultrasound imaging in biological tissues, radiative transfer in the upper Earth crust for oil exploration, and propagation of laser pulses in telecommunication applications.

  5. 3D NEAREST NEIGHBOUR SEARCH USING A CLUSTERED HIERARCHICAL TREE STRUCTURE

    Directory of Open Access Journals (Sweden)

    A. Suhaibah

    2016-06-01

    Full Text Available Locating and analysing the location of new stores or outlets is one of the common issues facing retailers and franchisers. This is due to assure that new opening stores are at their strategic location to attract the highest possible number of customers. Spatial information is used to manage, maintain and analyse these store locations. However, since the business of franchising and chain stores in urban areas runs within high rise multi-level buildings, a three-dimensional (3D method is prominently required in order to locate and identify the surrounding information such as at which level of the franchise unit will be located or is the franchise unit located is at the best level for visibility purposes. One of the common used analyses used for retrieving the surrounding information is Nearest Neighbour (NN analysis. It uses a point location and identifies the surrounding neighbours. However, with the immense number of urban datasets, the retrieval and analysis of nearest neighbour information and their efficiency will become more complex and crucial. In this paper, we present a technique to retrieve nearest neighbour information in 3D space using a clustered hierarchical tree structure. Based on our findings, the proposed approach substantially showed an improvement of response time analysis compared to existing approaches of spatial access methods in databases. The query performance was tested using a dataset consisting of 500,000 point locations building and franchising unit. The results are presented in this paper. Another advantage of this structure is that it also offers a minimal overlap and coverage among nodes which can reduce repetitive data entry.

  6. 3D ultrasound computer tomography: update from a clinical study

    Science.gov (United States)

    Hopp, T.; Zapf, M.; Kretzek, E.; Henrich, J.; Tukalo, A.; Gemmeke, H.; Kaiser, C.; Knaudt, J.; Ruiter, N. V.

    2016-04-01

    Ultrasound Computer Tomography (USCT) is a promising new imaging method for breast cancer diagnosis. We developed a 3D USCT system and tested it in a pilot study with encouraging results: 3D USCT was able to depict two carcinomas, which were present in contrast enhanced MRI volumes serving as ground truth. To overcome severe differences in the breast shape, an image registration was applied. We analyzed the correlation between average sound speed in the breast and the breast density estimated from segmented MRIs and found a positive correlation with R=0.70. Based on the results of the pilot study we now carry out a successive clinical study with 200 patients. For this we integrated our reconstruction methods and image post-processing into a comprehensive workflow. It includes a dedicated DICOM viewer for interactive assessment of fused USCT images. A new preview mode now allows intuitive and faster patient positioning. We updated the USCT system to decrease the data acquisition time by approximately factor two and to increase the penetration depth of the breast into the USCT aperture by 1 cm. Furthermore the compute-intensive reflectivity reconstruction was considerably accelerated, now allowing a sub-millimeter volume reconstruction in approximately 16 minutes. The updates made it possible to successfully image first patients in our ongoing clinical study.

  7. Computational Modelling of Piston Ring Dynamics in 3D

    Directory of Open Access Journals (Sweden)

    Dlugoš Jozef

    2014-12-01

    Full Text Available Advanced computational models of a piston assembly based on the level of virtual prototypes require a detailed description of piston ring behaviour. Considering these requirements, the piston rings operate in regimes that cannot, in general, be simplified into an axisymmetric model. The piston and the cylinder liner do not have a perfect round shape, mainly due to machining tolerances and external thermo-mechanical loads. If the ring cannot follow the liner deformations, a local loss of contact occurs resulting in blow-by and increased consumption of lubricant oil in the engine. Current computational models are unable to implement such effects. The paper focuses on the development of a flexible 3D piston ring model based on the Timoshenko beam theory using the multibody system (MBS. The MBS model is compared to the finite element method (FEM solution.

  8. Hierarchical 3D mechanical parts matching based-on adjustable geometry and topology similarity measurements

    Institute of Scientific and Technical Information of China (English)

    马嵩华; 田凌

    2014-01-01

    A hierarchical scheme of feature-based model similarity measurement was proposed, named CSG_D2, in which both geometry similarity and topology similarity were applied. The features of 3D mechanical part were constructed by a series of primitive features with tree structure, as a form of constructive solid geometry (CSG) tree. The D2 shape distributions of these features were extracted for geometry similarity measurement, and the pose vector and non-disappeared proportion of each leaf node were gained for topology similarity measurement. Based on these, the dissimilarity between the query and the candidate was accessed by level-by-level CSG tree comparisons. With the adjustable weights, our scheme satisfies different comparison emphasis on the geometry or topology similarity. The assessment results from CSG_D2 demonstrate more discriminative than those from D2 in the analysis of precision-recall and similarity matrix. Finally, an experimental search engine is applied for mechanical parts reuse by using CSG_D2, which is convenient for the mechanical design process.

  9. Data compression studies for NOAA Hyperspectral Environmental Suite (HES) using 3D integer wavelet transforms with 3D set partitioning in hierarchical trees

    Science.gov (United States)

    Huang, Bormin; Huang, Hung-Lung; Chen, Hao; Ahuja, Alok; Baggett, Kevin; Schmit, Timothy J.; Heymann, Roger W.

    2004-02-01

    The next-generation NOAA/NESDIS GOES-R hyperspectral sounder, now referred to as the HES (Hyperspectral Environmental Suite), will have hyperspectral resolution (over one thousand channels with spectral widths on the order of 0.5 wavenumber) and high spatial resolution (less than 10 km). Hyperspectral sounder data is a particular class of data requiring high accuracy for useful retrieval of atmospheric temperature and moisture profiles, surface characteristics, cloud properties, and trace gas information. Hence compression of these data sets is better to be lossless or near lossless. Given the large volume of three-dimensional hyperspectral sounder data that will be generated by the HES instrument, the use of robust data compression techniques will be beneficial to data transfer and archive. In this paper, we study lossless data compression for the HES using 3D integer wavelet transforms via the lifting schemes. The wavelet coefficients are processed with the 3D set partitioning in hierarchical trees (SPIHT) scheme followed by context-based arithmetic coding. SPIHT provides better coding efficiency than Shapiro's original embedded zerotree wavelet (EZW) algorithm. We extend the 3D SPIHT scheme to take on any size of 3D satellite data, each of whose dimensions need not be divisible by 2N, where N is the levels of the wavelet decomposition being performed. The compression ratios of various kinds of wavelet transforms are presented along with a comparison with the JPEG2000 codec.

  10. 3D computer modeling of sitting working place.

    Science.gov (United States)

    Mijović, B; Ujević, D; Skoko, M; Baksa, S

    2002-12-01

    Ergonomic contribution to designing and modeling of sitting working place by use of a computer and computer programs have been presented in this work. The influences of modeling working places on regular posture of a man/woman during work have been reconsidered, so that consumption of energy and fatigue are brought down to a minimum. For that purpose a computer program has been made which with input data on various kinds of work, sex and height of a worker determines the optimal ergonomic parameters during the modeling of a sitting working place. By computer visualisation the values of angle of spine curving have been calculated, the manipulation angle of arms and legs for three anthropometric heights of workers (160 cm, 175 cm and 190 cm). The dimensions of manipulative body space have been established by computerised 3D anthropometric analysis of movement as for example, reach of arms, legs, head, back etc positions. In this process the dimensions of machine and working space surrounding it in respect to optimal utilisation have been put in accordance with the anthropometric size of a man/woman.

  11. Computational approaches to 3D modeling of RNA

    Energy Technology Data Exchange (ETDEWEB)

    Laing, Christian; Schlick, Tamar, E-mail: schlick@nyu.ed [Department of Chemistry and Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY 10012 (United States)

    2010-07-21

    Many exciting discoveries have recently revealed the versatility of RNA and its importance in a variety of functions within the cell. Since the structural features of RNA are of major importance to their biological function, there is much interest in predicting RNA structure, either in free form or in interaction with various ligands, including proteins, metabolites and other molecules. In recent years, an increasing number of researchers have developed novel RNA algorithms for predicting RNA secondary and tertiary structures. In this review, we describe current experimental and computational advances and discuss recent ideas that are transforming the traditional view of RNA folding. To evaluate the performance of the most recent RNA 3D folding algorithms, we provide a comparative study in order to test the performance of available 3D structure prediction algorithms for an RNA data set of 43 structures of various lengths and motifs. We find that the algorithms vary widely in terms of prediction quality across different RNA lengths and topologies; most predictions have very large root mean square deviations from the experimental structure. We conclude by outlining some suggestions for future RNA folding research. (topical review)

  12. Computational model of mesenchymal migration in 3D under chemotaxis.

    Science.gov (United States)

    Ribeiro, F O; Gómez-Benito, M J; Folgado, J; Fernandes, P R; García-Aznar, J M

    2017-01-01

    Cell chemotaxis is an important characteristic of cellular migration, which takes part in crucial aspects of life and development. In this work, we propose a novel in silico model of mesenchymal 3D migration with competing protrusions under a chemotactic gradient. Based on recent experimental observations, we identify three main stages that can regulate mesenchymal chemotaxis: chemosensing, dendritic protrusion dynamics and cell-matrix interactions. Therefore, each of these features is considered as a different module of the main regulatory computational algorithm. The numerical model was particularized for the case of fibroblast chemotaxis under a PDGF-bb gradient. Fibroblasts migration was simulated embedded in two different 3D matrices - collagen and fibrin - and under several PDGF-bb concentrations. Validation of the model results was provided through qualitative and quantitative comparison with in vitro studies. Our numerical predictions of cell trajectories and speeds were within the measured in vitro ranges in both collagen and fibrin matrices. Although in fibrin, the migration speed of fibroblasts is very low, because fibrin is a stiffer and more entangling matrix. Testing PDGF-bb concentrations, we noticed that an increment of this factor produces a speed increment. At 1 ng mL(-1) a speed peak is reached after which the migration speed diminishes again. Moreover, we observed that fibrin exerts a dampening behavior on migration, significantly affecting the migration efficiency.

  13. Glasses for 3D ultrasound computer tomography: phase compensation

    Science.gov (United States)

    Zapf, M.; Hopp, T.; Ruiter, N. V.

    2016-03-01

    Ultrasound Computer Tomography (USCT), developed at KIT, is a promising new imaging system for breast cancer diagnosis, and was successfully tested in a pilot study. The 3D USCT II prototype consists of several hundreds of ultrasound (US) transducers on a semi-ellipsoidal aperture. Spherical waves are sequentially emitted by individual transducers and received in parallel by many transducers. Reflectivity volumes are reconstructed by synthetic aperture focusing (SAFT). However, straight forward SAFT imaging leads to blurred images due to system imperfections. We present an extension of a previously proposed approach to enhance the images. This approach includes additional a priori information and system characteristics. Now spatial phase compensation was included. The approach was evaluated with a simulation and clinical data sets. An increase in the image quality was observed and quantitatively measured by SNR and other metrics.

  14. Computational and methodological developments towards 3D full waveform inversion

    Science.gov (United States)

    Etienne, V.; Virieux, J.; Hu, G.; Jia, Y.; Operto, S.

    2010-12-01

    Full waveform inversion (FWI) is one of the most promising techniques for seismic imaging. It relies on a formalism taking into account every piece of information contained in the seismic data as opposed to more classical techniques such as travel time tomography. As a result, FWI is a high resolution imaging process able to reach a spatial accuracy equal to half a wavelength. FWI is based on a local optimization scheme and therefore the main limitation concerns the starting model which has to be closed enough to the real one in order to converge to the global minimum. Another counterpart of FWI is the required computational resources when considering models and frequencies of interest. The task becomes even more tremendous when one tends to perform the inversion using the elastic equation instead of using the acoustic approximation. This is the reason why until recently most studies were limited to 2D cases. In the last few years, due to the increase of the available computational power, FWI has focused a lot of interests and continuous efforts towards inversion of 3D models, leading to remarkable applications up to the continental scale. We investigate the computational burden induced by FWI in 3D elastic media and propose some strategic features leading to the reduction of the numerical cost while providing a great flexibility in the inversion parametrization. First, in order to release the memory requirements, we developed our FWI algorithm in the frequency domain and take benefit of the wave-number redundancy in the seismic data to process a quite reduced number of frequencies. To do so, we extract frequency solutions from time marching techniques which are efficient for 3D structures. Moreover, this frequency approach permits a multi-resolution strategy by proceeding from low to high frequencies: the final model at one frequency is used as the starting model for the next frequency. This procedure overcomes partially the non-linear behavior of the inversion

  15. Protein 3D structure computed from evolutionary sequence variation.

    Directory of Open Access Journals (Sweden)

    Debora S Marks

    Full Text Available The evolutionary trajectory of a protein through sequence space is constrained by its function. Collections of sequence homologs record the outcomes of millions of evolutionary experiments in which the protein evolves according to these constraints. Deciphering the evolutionary record held in these sequences and exploiting it for predictive and engineering purposes presents a formidable challenge. The potential benefit of solving this challenge is amplified by the advent of inexpensive high-throughput genomic sequencing.In this paper we ask whether we can infer evolutionary constraints from a set of sequence homologs of a protein. The challenge is to distinguish true co-evolution couplings from the noisy set of observed correlations. We address this challenge using a maximum entropy model of the protein sequence, constrained by the statistics of the multiple sequence alignment, to infer residue pair couplings. Surprisingly, we find that the strength of these inferred couplings is an excellent predictor of residue-residue proximity in folded structures. Indeed, the top-scoring residue couplings are sufficiently accurate and well-distributed to define the 3D protein fold with remarkable accuracy.We quantify this observation by computing, from sequence alone, all-atom 3D structures of fifteen test proteins from different fold classes, ranging in size from 50 to 260 residues, including a G-protein coupled receptor. These blinded inferences are de novo, i.e., they do not use homology modeling or sequence-similar fragments from known structures. The co-evolution signals provide sufficient information to determine accurate 3D protein structure to 2.7-4.8 Å C(α-RMSD error relative to the observed structure, over at least two-thirds of the protein (method called EVfold, details at http://EVfold.org. This discovery provides insight into essential interactions constraining protein evolution and will facilitate a comprehensive survey of the universe of

  16. Protein 3D structure computed from evolutionary sequence variation.

    Science.gov (United States)

    Marks, Debora S; Colwell, Lucy J; Sheridan, Robert; Hopf, Thomas A; Pagnani, Andrea; Zecchina, Riccardo; Sander, Chris

    2011-01-01

    The evolutionary trajectory of a protein through sequence space is constrained by its function. Collections of sequence homologs record the outcomes of millions of evolutionary experiments in which the protein evolves according to these constraints. Deciphering the evolutionary record held in these sequences and exploiting it for predictive and engineering purposes presents a formidable challenge. The potential benefit of solving this challenge is amplified by the advent of inexpensive high-throughput genomic sequencing.In this paper we ask whether we can infer evolutionary constraints from a set of sequence homologs of a protein. The challenge is to distinguish true co-evolution couplings from the noisy set of observed correlations. We address this challenge using a maximum entropy model of the protein sequence, constrained by the statistics of the multiple sequence alignment, to infer residue pair couplings. Surprisingly, we find that the strength of these inferred couplings is an excellent predictor of residue-residue proximity in folded structures. Indeed, the top-scoring residue couplings are sufficiently accurate and well-distributed to define the 3D protein fold with remarkable accuracy.We quantify this observation by computing, from sequence alone, all-atom 3D structures of fifteen test proteins from different fold classes, ranging in size from 50 to 260 residues, including a G-protein coupled receptor. These blinded inferences are de novo, i.e., they do not use homology modeling or sequence-similar fragments from known structures. The co-evolution signals provide sufficient information to determine accurate 3D protein structure to 2.7-4.8 Å C(α)-RMSD error relative to the observed structure, over at least two-thirds of the protein (method called EVfold, details at http://EVfold.org). This discovery provides insight into essential interactions constraining protein evolution and will facilitate a comprehensive survey of the universe of protein structures

  17. 3D Computer aided treatment planning in endodontics.

    Science.gov (United States)

    van der Meer, Wicher J; Vissink, Arjan; Ng, Yuan Ling; Gulabivala, Kishor

    2016-02-01

    Obliteration of the root canal system due to accelerated dentinogenesis and dystrophic calcification can challenge the achievement of root canal treatment goals. This paper describes the application of 3D digital mapping technology for predictable navigation of obliterated canal systems during root canal treatment to avoid iatrogenic damage of the root. Digital endodontic treatment planning for anterior teeth with severely obliterated root canal systems was accomplished with the aid of computer software, based on cone beam computer tomography (CBCT) scans and intra-oral scans of the dentition. On the basis of these scans, endodontic guides were created for the planned treatment through digital designing and rapid prototyping fabrication. The custom-made guides allowed for an uncomplicated and predictable canal location and management. The method of digital designing and rapid prototyping of endodontic guides allows for reliable and predictable location of root canals of teeth with calcifically metamorphosed root canal systems. The endodontic directional guide facilitates difficult endodontic treatments at little additional cost. Copyright © 2016. Published by Elsevier Ltd.

  18. Creating bio-inspired hierarchical 3D-2D photonic stacks via planar lithography on self-assembled inverse opals

    CERN Document Server

    Burgess, Ian B; Loncar, Marko

    2012-01-01

    Structural hierarchy and complex 3D architecture are characteristics of biological photonic designs that are challenging to reproduce in synthetic materials. Top-down lithography allows for designer patterning of arbitrary shapes, but is largely restricted to planar 2D structures. Self-assembly techniques facilitate easy fabrication of 3D photonic crystals, but controllable defect-integration is difficult. In this paper we combine the advantages of top-down and bottom-up fabrication, developing two techniques to deposit 2D-lithographically-patterned planar layers on top of or in between inverse-opal 3D photonic crystals and creating hierarchical structures that resemble the architecture of the bright green wing scales of the butterfly, Parides sesostris. These fabrication procedures, combining advantages of both top-down and bottom-up fabrication, may prove useful in the development of omnidirectional coloration elements and 3D-2D photonic crystal devices.

  19. Creating bio-inspired hierarchical 3D-2D photonic stacks via planar lithography on self-assembled inverse opals.

    Science.gov (United States)

    Burgess, Ian B; Aizenberg, Joanna; Lončar, Marko

    2013-12-01

    Structural hierarchy and complex 3D architecture are characteristics of biological photonic designs that are challenging to reproduce in synthetic materials. Top-down lithography allows for designer patterning of arbitrary shapes, but is largely restricted to planar 2D structures. Self-assembly techniques facilitate easy fabrication of 3D photonic crystals, but controllable defect-integration is difficult. In this paper we combine the advantages of top-down and bottom-up fabrication, developing two techniques to deposit 2D-lithographically-patterned planar layers on top of or in between inverse-opal 3D photonic crystals and creating hierarchical structures that resemble the architecture of the bright green wing scales of the butterfly, Parides sesostris. These fabrication procedures, combining advantages of both top-down and bottom-up fabrication, may prove useful in the development of omnidirectional coloration elements and 3D-2D photonic crystal devices.

  20. 3D Vectorial Time Domain Computational Integrated Photonics

    Energy Technology Data Exchange (ETDEWEB)

    Kallman, J S; Bond, T C; Koning, J M; Stowell, M L

    2007-02-16

    The design of integrated photonic structures poses considerable challenges. 3D-Time-Domain design tools are fundamental in enabling technologies such as all-optical logic, photonic bandgap sensors, THz imaging, and fast radiation diagnostics. Such technologies are essential to LLNL and WFO sponsors for a broad range of applications: encryption for communications and surveillance sensors (NSA, NAI and IDIV/PAT); high density optical interconnects for high-performance computing (ASCI); high-bandwidth instrumentation for NIF diagnostics; micro-sensor development for weapon miniaturization within the Stockpile Stewardship and DNT programs; and applications within HSO for CBNP detection devices. While there exist a number of photonics simulation tools on the market, they primarily model devices of interest to the communications industry. We saw the need to extend our previous software to match the Laboratory's unique emerging needs. These include modeling novel material effects (such as those of radiation induced carrier concentrations on refractive index) and device configurations (RadTracker bulk optics with radiation induced details, Optical Logic edge emitting lasers with lateral optical inputs). In addition we foresaw significant advantages to expanding our own internal simulation codes: parallel supercomputing could be incorporated from the start, and the simulation source code would be accessible for modification and extension. This work addressed Engineering's Simulation Technology Focus Area, specifically photonics. Problems addressed from the Engineering roadmap of the time included modeling the Auston switch (an important THz source/receiver), modeling Vertical Cavity Surface Emitting Lasers (VCSELs, which had been envisioned as part of fast radiation sensors), and multi-scale modeling of optical systems (for a variety of applications). We proposed to develop novel techniques to numerically solve the 3D multi-scale propagation problem for both the

  1. Weight prediction of broiler chickens using 3D computer vision

    DEFF Research Database (Denmark)

    Mortensen, Anders Krogh; Lisouski, Pavel; Ahrendt, Peter

    2016-01-01

    a platform weigher which may also include ill birds. In the current study, a fully-automatic 3D camera-based weighing system for broilers have been developed and evaluated in a commercial production environment. Specifically, a low-cost 3D camera (Kinect) that directly returned a depth image was employed...

  2. 3D Graphene-Foam-Reduced-Graphene-Oxide Hybrid Nested Hierarchical Networks for High-Performance Li-S Batteries.

    Science.gov (United States)

    Hu, Guangjian; Xu, Chuan; Sun, Zhenhua; Wang, Shaogang; Cheng, Hui-Ming; Li, Feng; Ren, Wencai

    2016-02-24

    A 3D graphene-foam-reduced-graphene-oxide hybrid nested hierarchical network is synthesized to achieve high sulfur loading and content simultaneously, which solves the "double low" issues of Li-S batteries. The obtained Li-S cathodes show a high areal capacity two times larger than that of commercial lithium-ion batteries, and a good cycling performance comparable to those at low sulfur loading.

  3. A High-Transmission, Multiple Antireflective Surface Inspired from Bilayer 3D Ultrafine Hierarchical Structures in Butterfly Wing Scales.

    Science.gov (United States)

    Han, Zhiwu; Mu, Zhengzhi; Li, Bo; Niu, Shichao; Zhang, Junqiu; Ren, Luquan

    2016-02-10

    A high-transmission, multiple antireflective surface inspired by bilayer 3D ultrafine hierarchical structures in butterfly wing scales is fabricated on a glass substrate using wet chemical biomimetic fabrication. Interestingly, the biomimetic antireflective surface exhibits excellent antireflective properties and high transmission, which provides better characteristics than the butterfly wings and can significantly reduce reflection without losing transparency. These findings offer a new path for generating nanostructured antireflectors with high transmission properties.

  4. Design for scalability in 3D computer graphics architectures

    DEFF Research Database (Denmark)

    Holten-Lund, Hans Erik

    2002-01-01

    been developed. Hybris is a prototype rendering architeture which can be tailored to many specific 3D graphics applications and implemented in various ways. Parallel software implementations for both single and multi-processor Windows 2000 system have been demonstrated. Working hardware/software...... codesign implementations of Hybris for standard-cell based ASIC (simulated) and FPGA technologies have been demonstrated, using manual co-synthesis for translation of a Virtual Prototyping architecture specification written in C into both optimized C source for software and into to a synthesizable VHDL...... specification for hardware implementation. A flexible VRML 97 3D scene graph engine with a Java interface and C++ interface has been implemented to allow flexible integration of the rendering technology into Java and C++ applications. A 3D medical visualization workstation prototype (3D-Med) is examined...

  5. 3D Printing device adaptable to Computer Numerical Control (CNC)

    OpenAIRE

    Gardan, Julien; DANESI, Frédéric; Roucoules, Lionel; Schneider, A

    2014-01-01

    This article presents the development of a 3D printing device for the additive manufacturing adapted to a CNC machining. The application involves the integration of a specific printing head. Additive manufacturing technology is most commonly used for modeling, prototyping, tooling through an exclusive machine or 3D printer. A global review and analysis of technologies show the additive manufacturing presents little independent solutions [6][9]. The problem studied especially the additive manu...

  6. Enhanced Electrocatalytic Activity of Pt/3D Hierarchical Bimodal Macroporous Carbon Nanospheres.

    Science.gov (United States)

    Balgis, Ratna; Widiyastuti, W; Ogi, Takashi; Okuyama, Kikuo

    2017-07-19

    Proton exchange membrane fuel cells require electrocatalysts with a high platinum (Pt) loading, large active surface area, and favorable hydrodynamic profile for practical applications. Here, we report the design of three-dimensional hierarchical bimodal macroporous carbon nanospheres with an interconnected pore system, which are applied as an electrocatalyst support. Carbon-supported Pt (Pt/C) catalysts were prepared by aerosol spray pyrolysis followed by microwave chemical deposition. The hierarchical porous structures not only increased the dispersion of Pt nanoparticles but also improved catalytic performance. A hierarchical bimodal macroporous Pt/C catalyst with a mixture of 30 and 120 nm size pores showed the best performance. The electrochemical surface area and mass activity values of this support were 96 m(2) g(-1)-Pt and 378 mA mg(-1)-Pt, respectively at a Pt loading of 15 wt %.

  7. Software-based geometry operations for 3D computer graphics

    NARCIS (Netherlands)

    Sima, M.; Iancu, D.; Glossner, J.; Schulte, M.; Mamidi, S.

    2006-01-01

    In order to support a broad dynamic range and a high degree of precision, many of 3D renderings fundamental algorithms have been traditionally performed in floating-point. However, fixed-point data representation is preferable over floatingpoint representation in graphics applications on embedded de

  8. Software-based geometry operations for 3D computer graphics

    NARCIS (Netherlands)

    Sima, M.; Iancu, D.; Glossner, J.; Schulte, M.; Mamidi, S.

    2006-01-01

    In order to support a broad dynamic range and a high degree of precision, many of 3D renderings fundamental algorithms have been traditionally performed in floating-point. However, fixed-point data representation is preferable over floatingpoint representation in graphics applications on embedded

  9. 3D Computer aided treatment planning in endodontics

    NARCIS (Netherlands)

    van der Meer, Wicher J.; Vissink, Arjan; Ng, Yuan Ling; Gulabivala, Kishor

    Objectives: Obliteration of the root canal system due to accelerated dentinogenesis and dystrophic calcification can challenge the achievement of root canal treatment goals. This paper describes the application of 3D digital mapping technology for predictable navigation of obliterated canal systems

  10. Pose Estimation using a Hierarchical 3D Representation of Contours and Surfaces

    DEFF Research Database (Denmark)

    Buch, Anders Glent; Kraft, Dirk; Kämäräinen, Joni-Kristian

    2013-01-01

    We present a system for detecting the pose of rigid objects using texture and contour information. From a stereo image view of a scene, a sparse hierarchical scene representation is reconstructed using an early cognitive vision system. We define an object model in terms of a simple context descri...

  11. Assembly of tin oxide/graphene nanosheets into 3D hierarchical frameworks for high-performance lithium storage.

    Science.gov (United States)

    Huang, Yanshan; Wu, Dongqing; Han, Sheng; Li, Shuang; Xiao, Li; Zhang, Fan; Feng, Xinliang

    2013-08-01

    3D hierarchical tin oxide/graphene frameworks (SnO2 /GFs) were built up by the in situ synthesis of 2D SnO2 /graphene nanosheets followed by hydrothermal assembly. These SnO2 /GFs exhibited a 3D hierarchical porous architecture with mesopores (≈3 nm), macropores (3-6 μm), and a large surface area (244 m(2) g(-1) ), which not only effectively prevented the agglomeration of SnO2 nanoparticles, but also facilitated fast ion and electron transport in 3D pathways. As a consequence, the SnO2 /GFs exhibited a high capacity of 830 mAh g(-1) for up to 70 charge-discharge cycles at 100 mA g(-1) . Even at a high current density of 500 mA g(-1) , a reversible capacity of 621 mAh g(-1) could be maintained for SnO2 /GFs with excellent cycling stability. Such performance is superior to that of previously reported SnO2 /graphene and other SnO2 /carbon composites with similar weight contents of SnO2 .

  12. Hierarchical online appearance-based tracking for 3D head pose, eyebrows, lips, eyelids, and irises

    NARCIS (Netherlands)

    Orozco, Javier; Rudovic, Ognjen; Gonzalez Garcia, Jordi; Pantic, Maja

    2013-01-01

    In this paper, we propose an On-line Appearance-Based Tracker (OABT) for simultaneous tracking of 3D head pose, lips, eyebrows, eyelids and irises in monocular video sequences. In contrast to previously proposed tracking approaches, which deal with face and gaze tracking separately, our OABT can als

  13. 3D hierarchical walnut-like CuO nanostructures: Preparation, characterization and their efficient catalytic activity for CO oxidation

    Science.gov (United States)

    Yao, Weitang; Zhang, Yujuan; Duan, Tao; Zhu, Wenkun; Yi, Zao; Cui, Xudong

    2016-07-01

    In this work, 3D hierarchical walnut-shaped, 2D nanosheet and 3D microspheres single phase CuO nanostructures are functioning as catalysts and supporting materials, differing from the conventional ways. The novel nanostructures were synthesized via hydrothermal method under a stainless steel autoclave. The as-prepared materials were characterized by X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), field emission scanning electron microscopy (FESEM), transmission electron microscopy (TEM), and H2 temperature-programmed reduction (H2-TPR). The walnut-shaped structures with high O/Cu atomic ratio (1.22) exhibit high oxygen adsorption capacity and greatly enhanced catalytic activity. These results will be enrich the techniques for tuning the morphologies of metal oxide micro/nanostructures and open a new field in catalytic applications.

  14. 3D hierarchical walnut-like CuO nanostructures: Preparation, characterization and their efficient catalytic activity for CO oxidation

    Energy Technology Data Exchange (ETDEWEB)

    Yao, Weitang [Laboratory of Extreme Conditions Matter Properties, Southwest University of Science and Technology, Mianyang 621010 (China); Zhang, Yujuan [Laboratory of Extreme Conditions Matter Properties, Southwest University of Science and Technology, Mianyang 621010 (China); Science and Technology on Plasma Physics Laboratory, Research Center of Laser Fusion, CAEP, Mianyang, Sichuan 621900 (China); Duan, Tao, E-mail: duant@ustc.edu.cn [Laboratory of Extreme Conditions Matter Properties, Southwest University of Science and Technology, Mianyang 621010 (China); Zhu, Wenkun; Yi, Zao [Laboratory of Extreme Conditions Matter Properties, Southwest University of Science and Technology, Mianyang 621010 (China); Cui, Xudong, E-mail: xudcui@163.com [Science and Technology on Plasma Physics Laboratory, Research Center of Laser Fusion, CAEP, Mianyang, Sichuan 621900 (China)

    2016-07-15

    In this work, 3D hierarchical walnut-shaped, 2D nanosheet and 3D microspheres single phase CuO nanostructures are functioning as catalysts and supporting materials, differing from the conventional ways. The novel nanostructures were synthesized via hydrothermal method under a stainless steel autoclave. The as-prepared materials were characterized by X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), field emission scanning electron microscopy (FESEM), transmission electron microscopy (TEM), and H{sub 2} temperature-programmed reduction (H{sub 2}-TPR). The walnut-shaped structures with high O/Cu atomic ratio (1.22) exhibit high oxygen adsorption capacity and greatly enhanced catalytic activity. These results will be enrich the techniques for tuning the morphologies of metal oxide micro/nanostructures and open a new field in catalytic applications.

  15. Hierarchical Biosilicates by the 3-D Replication of Block Copolymer Templates in Supercritical Fluids

    Science.gov (United States)

    2009-12-30

    replicated in metal oxides. The process involves the supercritical CO2-assisted infusion and phase selective condensation of silica precursors within one...cell biology of silica biomineralization . Protist 1998, 149, (3), 213-219. 19. Poulsen, N.; Sumper, M.; Kroger, N., Biosilica formation in diatoms...energy applications [electronic resource] : fabrication of mesoporous metal oxide films by 3-D replication of block copolymers. University of

  16. Massively parallel computers for 3D single-photon-emission computed tomography

    Energy Technology Data Exchange (ETDEWEB)

    Butler, C.S.; Miller, M.I. (Washington Univ., St. Louis, MO (United States). Electronic Systems and Signals Research Lab.); Miller, T.R.; Wallis, J.W. (Washington Univ., St. Louis, MO (United States). Edward Mallinckrodt Inst. of Radiology)

    1994-03-01

    Since the introduction of the expectation-maximization (EM) algorithm for generating maximum-likelihood (ML) and maximum a posteriori (MAP) estimates in emission tomography, there have been many investigators applying the ML method. However, almost all of the previous work has been restricted to two-dimensional (2D) reconstructions. The major focus and contribution of this paper is to demonstrate a fully three-dimensional (3D) implementation of the MAP method for single-photon-emission computed tomography (SPECT). The 3D reconstruction exhibits an improvement in resolution when compared to the generation of the series of separate 2D slice reconstructions. (Author).

  17. Interactive 3D computer model of the human corneolimbal region

    DEFF Research Database (Denmark)

    Molvaer, Rikke Kongshaug; Andreasen, Arne; Heegaard, Steffen;

    2013-01-01

    in the superior limbal region and one LEC, six LCs and 12 FSPs in the inferior limbal region. Only few LECs, LCs and FSPs were localized nasally and temporally. CONCLUSION: Interactive 3D models are a powerful tool that may help to shed more light on the existence and spatial localization of the different stem......PURPOSE: This study aims to clarify the existence of and to map the localization of different proposed stem cell niches in the corneal limbal region. MATERIALS AND METHODS: One human eye was cut into 2200 consecutive sections. Every other section was stained with haematoxylin and eosin, digitized...... in the limbal region: limbal epithelial crypts (LECs), limbal crypts (LCs) and focal stromal projections (FSPs). In all, eight LECs, 25 LCs and 105 FSPs were identified in the limbal region. The LECs, LCs and FSPs were predominantly located in the superior limbal region with seven LECs, 19 LCs and 93 FSPs...

  18. 3D computational steering with parametrized geometric objects

    NARCIS (Netherlands)

    Mulder, J.D.; Wijk, J.J. van

    1996-01-01

    Computational Steering is the ultimate goal of interactive simulation: researchers change parameters of their simulation and immediately receive feedback on the effect. We present a general and flexible graphics tool that is part of an environment for Computational Steering developed at CWI. It enab

  19. 3-D Signal Processing in a Computer Vision System

    Science.gov (United States)

    Dongping Zhu; Richard W. Conners; Philip A. Araman

    1991-01-01

    This paper discusses the problem of 3-dimensional image filtering in a computer vision system that would locate and identify internal structural failure. In particular, a 2-dimensional adaptive filter proposed by Unser has been extended to 3-dimension. In conjunction with segmentation and labeling, the new filter has been used in the computer vision system to...

  20. Efficient computation of steady, 3D water-wave patterns

    NARCIS (Netherlands)

    Lewis, M.R.; Koren, B.

    2003-01-01

    Numerical methods for the computation of stationary free surfaces is the subject of much current research in computational engineering. The present report is directed towards free surfaces in maritime engineering. Of interest here are the long steady waves generated by ships, the gravity waves. In t

  1. Hierarchical bioceramic scaffolds with 3D-plotted macropores and mussel-inspired surface nanolayers for stimulating osteogenesis

    Science.gov (United States)

    Xu, Mengchi; Zhai, Dong; Xia, Lunguo; Li, Hong; Chen, Shiyi; Fang, Bing; Chang, Jiang; Wu, Chengtie

    2016-07-01

    The hierarchical structure of biomaterials plays an important role in the process of tissue reconstruction and regeneration. 3D-plotted scaffolds have been widely used for bone tissue engineering due to their controlled macropore structure and mechanical properties. However, the lack of micro- or nano-structures on the strut surface of 3D-plotted scaffolds, especially for bioceramic scaffolds, limits their biological activity. Inspired by the adhesive versatility of mussels and the active ion-chelating capacity of polydopamine, we set out to prepare a hierarchical bioceramic scaffold with controlled macropores and mussel-inspired surface nanolayers by combining the 3D-plotting technique with the polydopamine/apatite hybrid strategy in order to synergistically accelerate the osteogenesis and angiogenesis. β-Tricalcium phosphate (TCP) scaffolds were firstly 3D-plotted and then treated in dopamine-Tris/HCl and dopamine-SBF solutions to obtain TCP-DOPA-Tris and TCP-DOPA-SBF scaffolds, respectively. It was found that polydopamine/apatite hybrid nanolayers were formed on the surface of both TCP-DOPA-Tris and TCP-DOPA-SBF scaffolds and TCP-DOPA-SBF scaffolds induced apatite mineralization for the second time during the cell culture. As compared to TCP scaffolds, both TCP-DOPA-Tris and TCP-DOPA-SBF scaffolds significantly promoted the osteogenesis of bone marrow stromal cells (BMSCs) as well as the angiogenesis of human umbilical vein endothelial cells (HUVECs), and the TCP-DOPA-SBF group presented the highest in vitro osteogenic/angiogenic activity among the three groups. Furthermore, both TCP-DOPA-Tris and TCP-DOPA-SBF scaffolds significantly improved the formation of new bone in vivo as compared to TCP scaffolds without a nanostructured surface. Our results suggest that the utilization of a mussel-inspired Ca, P-chelated polydopamine nanolayer on 3D-plotted bioceramic scaffolds is a viable and effective strategy to construct a hierarchical structure for synergistically

  2. A Relevancy, Hierarchical and Contextual Maximum Entropy Framework for a Data-Driven 3D Scene Generation

    Directory of Open Access Journals (Sweden)

    Mesfin Dema

    2014-05-01

    Full Text Available We introduce a novel Maximum Entropy (MaxEnt framework that can generate 3D scenes by incorporating objects’ relevancy, hierarchical and contextual constraints in a unified model. This model is formulated by a Gibbs distribution, under the MaxEnt framework, that can be sampled to generate plausible scenes. Unlike existing approaches, which represent a given scene by a single And-Or graph, the relevancy constraint (defined as the frequency with which a given object exists in the training data require our approach to sample from multiple And-Or graphs, allowing variability in terms of objects’ existence across synthesized scenes. Once an And-Or graph is sampled from the ensemble, the hierarchical constraints are employed to sample the Or-nodes (style variations and the contextual constraints are subsequently used to enforce the corresponding relations that must be satisfied by the And-nodes. To illustrate the proposed methodology, we use desk scenes that are composed of objects whose existence, styles and arrangements (position and orientation can vary from one scene to the next. The relevancy, hierarchical and contextual constraints are extracted from a set of training scenes and utilized to generate plausible synthetic scenes that in turn satisfy these constraints. After applying the proposed framework, scenes that are plausible representations of the training examples are automatically generated.

  3. Nanostructuring of hierarchical 3D cystine flowers for high-performance electrochemical immunosensor.

    Science.gov (United States)

    Pandey, Chandra Mouli; Sumana, Gajjala; Tiwari, Ida

    2014-11-15

    Here, we report a simple and reproducible method for large scale fabrication of novel flower and palm-leaf like 3D cystine microstructures (CMs) with high uniformity having a size of 50 µm and 10 µm respectively, through a facile aqueous solution route as a function of pH and concentration. In a proof-of-concept study, the 3D CMs have been further explored to fabricate a label-free high-performance electrochemical immunosensor by immobilizing monoclonal antibodies. Electrochemical methods were employed to study the stepwise modification of the system and the electronic transduction for the detection. The fabricated immunosensor design demonstrates high performance with enhanced sensitivity (4.70 cfu ml(-1)) and linear sensing range from 10 to 3 x 10(9) cfu ml(-1) a long shelf-life (35 days) and high selectivity over other bacterial pathogens. The enhanced performance originates from a novel nanostructuring in which the CMs provide higher surface coverage for the immobilization of antibodies providing excellent electronic/ionic conductivity which result in the enhanced sensitivity.

  4. Computer-assisted three-dimensional surgical planning and simulation: 3D virtual osteotomy.

    Science.gov (United States)

    Xia, J; Ip, H H; Samman, N; Wang, D; Kot, C S; Yeung, R W; Tideman, H

    2000-02-01

    A computer-assisted three-dimensional virtual osteotomy system for orthognathic surgery (CAVOS) is presented. The virtual reality workbench is used for surgical planning. The surgeon immerses in a virtual reality environment with stereo eyewear, holds a virtual "scalpel" (3D Mouse) and operates on a "real" patient (3D visualization) to obtain pre-surgical prediction (3D bony segment movements). Virtual surgery on a computer-generated 3D head model is simulated and can be visualized from any arbitrary viewing point in a personal computer system.

  5. 3D hierarchical porous graphene aerogel with tunable meso-pores on graphene nanosheets for high-performance energy storage

    Science.gov (United States)

    Ren, Long; Hui, K. N.; Hui, K. S.; Liu, Yundan; Qi, Xiang; Zhong, Jianxin; Du, Yi; Yang, Jianping

    2015-09-01

    New and novel 3D hierarchical porous graphene aerogels (HPGA) with uniform and tunable meso-pores (e.g., 21 and 53 nm) on graphene nanosheets (GNS) were prepared by a hydrothermal self-assembly process and an in-situ carbothermal reaction. The size and distribution of the meso-pores on the individual GNS were uniform and could be tuned by controlling the sizes of the Co3O4 NPs used in the hydrothermal reaction. This unique architecture of HPGA prevents the stacking of GNS and promises more electrochemically active sites that enhance the electrochemical storage level significantly. HPGA, as a lithium-ion battery anode, exhibited superior electrochemical performance, including a high reversible specific capacity of 1100 mAh/g at a current density of 0.1 A/g, outstanding cycling stability and excellent rate performance. Even at a large current density of 20 A/g, the reversible capacity was retained at 300 mAh/g, which is larger than that of most porous carbon-based anodes reported, suggesting it to be a promising candidate for energy storage. The proposed 3D HPGA is expected to provide an important platform that can promote the development of 3D topological porous systems in a range of energy storage and generation fields.

  6. α-Fe2O3/TiO2 3D hierarchical nanostructures for enhanced photoelectrochemical water splitting.

    Science.gov (United States)

    Han, Hyungkyu; Riboni, Francesca; Karlicky, Frantisek; Kment, Stepan; Goswami, Anandarup; Sudhagar, Pitchaimuthu; Yoo, Jeongeun; Wang, Lei; Tomanec, Ondrej; Petr, Martin; Haderka, Ondrej; Terashima, Chiaki; Fujishima, Akira; Schmuki, Patrik; Zboril, Radek

    2017-01-07

    We report the fabrication of 3D hierarchical hetero-nanostructures composed of thin α-Fe2O3 nanoflakes branched on TiO2 nanotubes. The novel α-Fe2O3/TiO2 hierarchical nanostructures, synthesized on FTO through a multi-step hydrothermal process, exhibit enhanced performances in photo-electrochemical water splitting and in the photocatalytic degradation of an organic dye, with respect to pure TiO2 nanotubes. An enhanced separation of photogenerated charge carriers is here proposed as the main factor for the observed photo-activities: electrons photogenerated in TiO2 are efficiently collected at FTO, while holes are transferred to the α-Fe2O3 nanobranches that serve as charge mediators to the electrolyte. The morphology of α-Fe2O3 that varies from ultrathin nanoflakes to nanorod/nanofiber structures depending on the Fe precursor concentration was shown to have a significant impact on the photo-induced activity of the α-Fe2O3/TiO2 composites. In particular, it is shown that for an optimized photo-electrochemical structure, a combination of critical factors should be achieved such as (i) TiO2 light absorption and photo-activation vs.α-Fe2O3-induced shadowing effect and (ii) the availability of free TiO2 surface vs.α-Fe2O3-coated surface. Finally, theoretical analysis, based on DFT calculations, confirmed the optical properties experimentally determined for the α-Fe2O3/TiO2 hierarchical nanostructures. We anticipate that this new multi-step hydrothermal process can be a blueprint for the design and development of other hierarchical heterogeneous metal oxide electrodes suitable for photo-electrochemical applications.

  7. Bio-Derived Hierarchical 3D Architecture from Seeds for Supercapacitor Application

    Science.gov (United States)

    Intawin, Pratthana; Sayed, Farheen N.; Pengpat, Kamonpan; Joyner, Jarin; Tiwary, Chandra Sekhar; Ajayan, Pulickel M.

    2017-09-01

    The generation and storage of green energy (energy from abundant and nonfossil) is important for a sustainable and clean future. The electrode material in a supercapacitor is a major component. The properties of these materials depend on its inherent architecture and composition. Here, we have chosen sunflower seeds and pumpkin seeds with a completely different structure to obtain a carbonaceous product. The product obtained from sunflower seed carbon is a three-dimensional hierarchical macroporous carbon (SSC) composed of many granular nanocrystals of potassium magnesium phosphate dispersed in a matrix. Contrary to this, carbon from pumpkin seeds (PSC) is revealed to be a more rigid structure, with no porous or ordered morphology. The electrochemical supercapacitive behavior was assessed by cyclic voltammetry and galvanostatic charge-discharge tests. Electrochemical measurements showed that the SSC shows a high specific capacitance of 24.9 Fg-1 as compared with that obtained (2.46 Fg-1) for PSC with a cycling efficiency of 87% and 89%, respectively. On high-temperature cycling for 500 charge-discharge cycles at 0.1 Ag-1, an improved cycling efficiency of 100% and 98% for SSC and PSC, respectively, is observed.

  8. Tensor3D: A computer graphics program to simulate 3D real-time deformation and visualization of geometric bodies

    Science.gov (United States)

    Pallozzi Lavorante, Luca; Dirk Ebert, Hans

    2008-07-01

    Tensor3D is a geometric modeling program with the capacity to simulate and visualize in real-time the deformation, specified through a tensor matrix and applied to triangulated models representing geological bodies. 3D visualization allows the study of deformational processes that are traditionally conducted in 2D, such as simple and pure shears. Besides geometric objects that are immediately available in the program window, the program can read other models from disk, thus being able to import objects created with different open-source or proprietary programs. A strain ellipsoid and a bounding box are simultaneously shown and instantly deformed with the main object. The principal axes of strain are visualized as well to provide graphical information about the orientation of the tensor's normal components. The deformed models can also be saved, retrieved later and deformed again, in order to study different steps of progressive strain, or to make this data available to other programs. The shape of stress ellipsoids and the corresponding Mohr circles defined by any stress tensor can also be represented. The application was written using the Visualization ToolKit, a powerful scientific visualization library in the public domain. This development choice, allied to the use of the Tcl/Tk programming language, which is independent on the host computational platform, makes the program a useful tool for the study of geometric deformations directly in three dimensions in teaching as well as research activities.

  9. Transcolonic retrograde ureteric catheterization assisted by 3-d computed tomography

    Energy Technology Data Exchange (ETDEWEB)

    Snow, T.M.; Olivier, J.; Vigar, M. [Gold Coast Hospital, Southport, QLD (Australia). Department of Radiology; Parnham, A.P. [Gold Coast Hospital, Southport, QLD (Australia). Department of Radiology

    1999-08-01

    A 42-year-old woman had bladder extrophy at birth, treated by ureterocolic anastomosis of her single kidney. She suffered recurrent hyperammonaemia, leading to comas, but refused an ileal conduit. During her most recent coma, it was decided to divert her urine to test whether this would reduce hyperammonaemia: this was accomplished by transcolonic retrograde catheterization of the ureter. This was only possible after computed tomography ureterography to show the ureterocolic anastomosis. Ureterocolic anastomosis is associated with several complications, the best known being hyperchloraemic acidosis and potassium deficiency. There is also a very high incidence of stricture at the anastomosis, both benign and malignant. Hyperammonaemia is less common. It can lead to disturbance of consciousness and seizures. It is caused by reabsorption of ammonia from the colon, exacerbated by the presence of urea-splitting organisms. Copyright (1999) Blackwell Science Pty Ltd 8 refs., 4 figs.

  10. Building a 3D Computed Tomography Scanner From Surplus Parts.

    Science.gov (United States)

    Haidekker, Mark A

    2014-01-01

    Computed tomography (CT) scanners are expensive imaging devices, often out of reach for small research groups. Designing and building a CT scanner from modular components is possible, and this article demonstrates that realization of a CT scanner from components is surprisingly easy. However, the high costs of a modular X-ray source and detector limit the overall cost savings. In this article, the possibility of building a CT scanner with available surplus X-ray parts is discussed, and a practical device is described that incurred costs of less than $16,000. The image quality of this device is comparable with commercial devices. The disadvantage is that design constraints imposed by the available components lead to slow scan speeds and a resolution of 0.5 mm. Despite these limitations, a device such as this is attractive for imaging studies in the biological and biomedical sciences, as well as for advancing CT technology itself.

  11. A hierarchical 3D segmentation method and the definition of vertebral body coordinate systems for QCT of the lumbar spine.

    Science.gov (United States)

    Mastmeyer, André; Engelke, Klaus; Fuchs, Christina; Kalender, Willi A

    2006-08-01

    We have developed a new hierarchical 3D technique to segment the vertebral bodies in order to measure bone mineral density (BMD) with high trueness and precision in volumetric CT datasets. The hierarchical approach starts with a coarse separation of the individual vertebrae, applies a variety of techniques to segment the vertebral bodies with increasing detail and ends with the definition of an anatomic coordinate system for each vertebral body, relative to which up to 41 trabecular and cortical volumes of interest are positioned. In a pre-segmentation step constraints consisting of Boolean combinations of simple geometric shapes are determined that enclose each individual vertebral body. Bound by these constraints viscous deformable models are used to segment the main shape of the vertebral bodies. Volume growing and morphological operations then capture the fine details of the bone-soft tissue interface. In the volumes of interest bone mineral density and content are determined. In addition, in the segmented vertebral bodies geometric parameters such as volume or the length of the main axes of inertia can be measured. Intra- and inter-operator precision errors of the segmentation procedure were analyzed using existing clinical patient datasets. Results for segmented volume, BMD, and coordinate system position were below 2.0%, 0.6%, and 0.7%, respectively. Trueness was analyzed using phantom scans. The bias of the segmented volume was below 4%; for BMD it was below 1.5%. The long-term goal of this work is improved fracture prediction and patient monitoring in the field of osteoporosis. A true 3D segmentation also enables an accurate measurement of geometrical parameters that may augment the clinical value of a pure BMD analysis.

  12. 3D-printed hierarchical scaffold for localized isoniazid/rifampin drug delivery and osteoarticular tuberculosis therapy.

    Science.gov (United States)

    Zhu, Min; Li, Kun; Zhu, Yufang; Zhang, Jianhua; Ye, Xiaojian

    2015-04-01

    After surgical treatment of osteoarticular tuberculosis (TB), it is necessary to fill the surgical defect with an implant, which combines the merits of osseous regeneration and local multi-drug therapy so as to avoid drug resistance and side effects. In this study, a 3D-printed macro/meso-porous composite scaffold is fabricated. High dosages of isoniazid (INH)/rifampin (RFP) anti-TB drugs are loaded into chemically modified mesoporous bioactive ceramics in advance, which are then bound with poly (3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBHHx) through a 3D printing procedure. The composite scaffolds show greatly prolonged drug release time compared to commercial calcium phosphate scaffolds either in vitro or in vivo. In addition, the drug concentrations on the periphery tissues of defect are maintained above INH/RFP minimal inhibitory concentrations even up to 12 weeks post-surgery, while they are extremely low in blood. Examinations of certain serum enzymes suggest no harm to hepatic or renal functions. Micro-CT evaluations and histology results also indicate partly degradation of the composite scaffolds and new bone growth in the cavity. These results suggest promising applications of our hierarchical composite scaffold in bone regeneration and local anti-TB therapy after osteoarticular TB debridement surgery.

  13. 3D Computational Simulation of Calcium Leaching in Cement Matrices

    Directory of Open Access Journals (Sweden)

    Gaitero, J. J.

    2014-12-01

    Full Text Available Calcium leaching is a degradation process consisting in progressive dissolution of the cement paste by migration of calcium atoms to the aggressive solution. It is therefore, a complex phenomenon involving several phases and dissolution and diffusion processes simultaneously. Along this work, a new computational scheme for the simulation of the degradation process in three dimensions was developed and tested. The toolkit was used to simulate accelerated calcium leaching by a 6M ammonium nitrate solution in cement matrices. The obtained outputs were the three dimensional representation of the matrix and the physicochemical properties of individual phases as a consequence of the degradation process. This not only makes it possible to study the evolution of such properties as a function of time but also as a function of the position within the matrix. The obtained results are in good agreement with experimental values of the elastic modulus in degraded and undegraded samples.El lixiviado de calcio es un proceso de degradación consistente en la disolución progresiva de la pasta de cemento por la migración de los átomos de calcio a la disolución agresiva. Se trata por tanto de un fenómeno complejo que involucra simultáneamente diferentes fases y procesos de disolución y difusión. En este trabajo se desarrolló y probó una nueva herramienta computacional para la simulación del proceso de degradación en tres dimensiones. Para ello se simuló el lixiviado de calcio acelerado provocado por una disolución de nitrato amónico 6M en matrices de cemento. Como resultado se obtuvieron la representación tridimensional de la matriz y las propiedades físico-químicas sus fases a lo largo del tiempo. Esto permitió estudiar la evolución de dichas propiedades a lo largo del proceso de degradación así como en función de su posición dentro de la matriz. Los resultados obtenidos coinciden con los valores experimentales del módulo elástico tanto

  14. CudaPre3D: An Alternative Preprocessing Algorithm for Accelerating 3D Convex Hull Computation on the GPU

    Directory of Open Access Journals (Sweden)

    MEI, G.

    2015-05-01

    Full Text Available In the calculating of convex hulls for point sets, a preprocessing procedure that is to filter the input points by discarding non-extreme points is commonly used to improve the computational efficiency. We previously proposed a quite straightforward preprocessing approach for accelerating 2D convex hull computation on the GPU. In this paper, we extend that algorithm to being used in 3D cases. The basic ideas behind these two preprocessing algorithms are similar: first, several groups of extreme points are found according to the original set of input points and several rotated versions of the input set; then, a convex polyhedron is created using the found extreme points; and finally those interior points locating inside the formed convex polyhedron are discarded. Experimental results show that: when employing the proposed preprocessing algorithm, it achieves the speedups of about 4x on average and 5x to 6x in the best cases over the cases where the proposed approach is not used. In addition, more than 95 percent of the input points can be discarded in most experimental tests.

  15. Bayesian 3D X-ray computed tomography image reconstruction with a scaled Gaussian mixture prior model

    Science.gov (United States)

    Wang, Li; Gac, Nicolas; Mohammad-Djafari, Ali

    2015-01-01

    In order to improve quality of 3D X-ray tomography reconstruction for Non Destructive Testing (NDT), we investigate in this paper hierarchical Bayesian methods. In NDT, useful prior information on the volume like the limited number of materials or the presence of homogeneous area can be included in the iterative reconstruction algorithms. In hierarchical Bayesian methods, not only the volume is estimated thanks to the prior model of the volume but also the hyper parameters of this prior. This additional complexity in the reconstruction methods when applied to large volumes (from 5123 to 81923 voxels) results in an increasing computational cost. To reduce it, the hierarchical Bayesian methods investigated in this paper lead to an algorithm acceleration by Variational Bayesian Approximation (VBA) [1] and hardware acceleration thanks to projection and back-projection operators paralleled on many core processors like GPU [2]. In this paper, we will consider a Student-t prior on the gradient of the image implemented in a hierarchical way [3, 4, 1]. Operators H (forward or projection) and Ht (adjoint or back-projection) implanted in multi-GPU [2] have been used in this study. Different methods will be evalued on synthetic volume "Shepp and Logan" in terms of quality and time of reconstruction. We used several simple regularizations of order 1 and order 2. Other prior models also exists [5]. Sometimes for a discrete image, we can do the segmentation and reconstruction at the same time, then the reconstruction can be done with less projections.

  16. Efficacy of 3-D computed tomographic reconstruction in evaluating anatomical relationships of colovesical fistula.

    Science.gov (United States)

    Shinojima, Toshiaki; Nakajima, Fumio; Koizumi, Jun

    2002-04-01

    A case of colovesical fistula is reported. The anatomy of the pelvis was determined preoperatively with 3-D computed tomography (CT), and the fistula, including adjacent structures, could clearly be seen. Compared with conventional axial CT imaging, 3-D CT provided better and more complete visualization of the anatomical relationships, which facilitated the surgical procedure and provided a good outcome.

  17. Probabilistic View-based 3D Curve Skeleton Computation on the GPU

    NARCIS (Netherlands)

    Kustra, Jacek; Jalba, Andrei; Telea, Alexandru

    2013-01-01

    Computing curve skeletons of 3D shapes is a challenging task. Recently, a high-potential technique for this task was proposed, based on integrating medial information obtained from several 2D projections of a 3D shape. However effective, this technique is strongly influenced in terms of complexity b

  18. Communicating long-span timber structures with 3D computer visualization

    OpenAIRE

    Janols, Henrik

    2005-01-01

    One of the reasons for the low amount of timber in construction is a general lack of knowledge about timber engineering and how timber can be used to its full advantage. In this thesis the focus is 3D computer visualisation (3D VIZ) of non-residential long-span timber structures, used for storage, industry and sports where 3D VIZ is defined as a process where a 3D-model is enhanced with environmental information e.g. texture maps and realistic light effects. An area of interest is the possibi...

  19. Practical limitations of cone-beam computed tomography in 3D cephalometry%Practical limitations of cone-beam computed tomography in3D cephalometry

    Institute of Scientific and Technical Information of China (English)

    Janalt Damstra; Zacharias Fourie; Yijin Ren

    2011-01-01

    3D cone beam computed tomography (CBCT) images offer a unique and new appreciation of the anatomical structures and underlying anomalies not possible with conventional radiographs.However,in almost all aspects of CBCT imaging,from utilization to application,inherent limitations and pitfalls exist.Importantly,these inherent limitations and pitfalls have practical implications which need to be addressed before the potential of this technology can be fully realized.The purpose of this review was to explore the current limitations and pitfalls associated with CBCT imaging to allow for better and more accurate understanding of the possibilities this imaging modality could offer,particularly pertaining to 3D cephalometry.

  20. Effect of coordinate rotation on 3D molecular descriptors computed by DragonX

    CERN Document Server

    Hechinger, Manuel

    2012-01-01

    Quantitative structure-property relations (QSPR) employing descriptors derived from the 3D molecular structure are frequently applied for property prediction in various fields of research. In particular, DragonX is one of the most widely used software packages for descriptor calculation. The reliability of 3D molecular descriptors computed by DragonX has lately been investigated, thereby focusing on the effect of computational methods used for molecular structure optimization on the accuracy of the resulting molecular descriptors. The present contribution extends the analysis to a more intrinsic problem of DragonX descriptor evaluation resulting from the sensitivity of the computed 3D descriptors on the coordinate system used for molecule description. Evaluating several 3D descriptors for converged molecular structures rotated around all 3 spatial axes (affine coordinate transformations) yields systematically varying descriptor values. Since this unphysical behavior severely affects the descriptor reliability...

  1. Electro-holography display using computer generated hologram of 3D objects based on projection spectra

    Science.gov (United States)

    Huang, Sujuan; Wang, Duocheng; He, Chao

    2012-11-01

    A new method of synthesizing computer-generated hologram of three-dimensional (3D) objects is proposed from their projection images. A series of projection images of 3D objects are recorded with one-dimensional azimuth scanning. According to the principles of paraboloid of revolution in 3D Fourier space and 3D central slice theorem, spectra information of 3D objects can be gathered from their projection images. Considering quantization error of horizontal and vertical directions, the spectrum information from each projection image is efficiently extracted in double circle and four circles shape, to enhance the utilization of projection spectra. Then spectra information of 3D objects from all projection images is encoded into computer-generated hologram based on Fourier transform using conjugate-symmetric extension. The hologram includes 3D information of objects. Experimental results for numerical reconstruction of the CGH at different distance validate the proposed methods and show its good performance. Electro-holographic reconstruction can be realized by using an electronic addressing reflective liquid-crystal display (LCD) spatial light modulator. The CGH from the computer is loaded onto the LCD. By illuminating a reference light from a laser source to the LCD, the amplitude and phase information included in the CGH will be reconstructed due to the diffraction of the light modulated by the LCD.

  2. An Approach to Computer Modeling of Geological Faults in 3D and an Application

    Institute of Scientific and Technical Information of China (English)

    ZHU Liang-feng; HE Zheng; PAN Xin; WU Xin-cai

    2006-01-01

    3D geological modeling, one of the most important applications in geosciences of 3D GIS, forms the basis and is a prerequisite for visualized representation and analysis of 3D geological data. Computer modeling of geological faults in 3D is currently a topical research area. Structural modeling techniques of complex geological entities containing reverse faults are discussed and a series of approaches are proposed. The geological concepts involved in computer modeling and visualization of geological fault in 3D are explained, the type of data of geological faults based on geological exploration is analyzed, and a normative database format for geological faults is designed. Two kinds of modeling approaches for faults are compared: a modeling technique of faults based on stratum recovery and a modeling technique of faults based on interpolation in subareas. A novel approach, called the Unified Modeling Technique for stratum and fault, is presented to solve the puzzling problems of reverse faults, syn-sedimentary faults and faults terminated within geological models. A case study of a fault model of bed rock in the Beijing Olympic Green District is presented in order to show the practical result of this method. The principle and the process of computer modeling of geological faults in 3D are discussed and a series of applied technical proposals established. It strengthens our profound comprehension of geological phenomena and the modeling approach, and establishes the basic techniques of 3D geological modeling for practical applications in the field of geosciences.

  3. 3D hierarchical flower-like nickel ferrite/manganese dioxide toward lead (II) removal from aqueous water.

    Science.gov (United States)

    Xiang, Bo; Ling, Dong; Lou, Han; Gu, Hongbo

    2017-03-05

    A functionalized magnetic nickel ferrite/manganese dioxide (NiFe2O4/MnO2) with 3D hierarchical flower-like and core-shell structure was synthesized by a facile hydrothermal approach and applied for the removal of Pb(II) ions from aqueous solutions. Batch adsorption experiments were conducted to study the effect of solution pH, initial Pb(II) concentration, and dose of absorbents on the Pb(II) removal by NiFe2O4/MnO2. The NiFe2O4/MnO2 nanocomposites showed the fast Pb(II) adsorption performance with the maximum adsorption capacity of 85.78mgg(-1). The adsorption kinetics of Pb(II) onto NiFe2O4/MnO2 obeyed a pseudo-second-order model. The isothermal experimental results indicated that the Langmuir model was fitted better than the Freundlich model, illustrating a monolayer adsorption process for Pb(II) onto NiFe2O4/MnO2. Meanwhile, the NiFe2O4/MnO2 was easily separated from the solution by an external magnet within a short period of time and still exhibited almost 80% removal capacity after six regenerations. The NiFe2O4/MnO2 is expected to be a new promising adsorbent for heavy metal removal.

  4. Assembly of a 3D Cellular Computer Using Folded E-Blocks

    Directory of Open Access Journals (Sweden)

    Shivendra Pandey

    2016-04-01

    Full Text Available The assembly of integrated circuits in three dimensions (3D provides a possible solution to address the ever-increasing demands of modern day electronic devices. It has been suggested that by using the third dimension, devices with high density, defect tolerance, short interconnects and small overall form factors could be created. However, apart from pseudo 3D architecture, such as monolithic integration, die, or wafer stacking, the creation of paradigms to integrate electronic low-complexity cellular building blocks in architecture that has tile space in all three dimensions has remained elusive. Here, we present software and hardware foundations for a truly 3D cellular computational devices that could be realized in practice. The computing architecture relies on the scalable, self-configurable and defect-tolerant cell matrix. The hardware is based on a scalable and manufacturable approach for 3D assembly using folded polyhedral electronic blocks (E-blocks. We created monomers, dimers and 2 × 2 × 2 assemblies of polyhedral E-blocks and verified the computational capabilities by implementing simple logic functions. We further show that 63.2% more compact 3D circuits can be obtained with our design automation tools compared to a 2D architecture. Our results provide a proof-of-concept for a scalable and manufacture-ready process for constructing massive-scale 3D computational devices.

  5. Computer-Designed Splints for Surgical Transfer of 3D Orthognathic Planning.

    Science.gov (United States)

    Zinser, Max; Zoeller, Joachim

    2015-10-01

    Advances in computers and imaging have permitted the adoption of three-dimensional (3D) planning protocols in orthognathic surgery, which may allow a paradigm shift when the computer-assisted planning can be transferred properly. The purpose of this investigation was to introduce an innovative clinical protocol using computer-aided designed and computer-aided manufactured (CAD/CAM) surgical splints for surgical transfer of 3D orthognathic planning compared with the classic technique using arbitrary occlusal splints. The clinical protocols consisted of computed tomography (CT) or cone-beam CT (CBCT) maxillofacial imaging, bone segmentation, 3D diagnosis, computer-assisted surgical treatment planning, and CAD/CAM surgical splints (group A) and manufacture of arbitrary occlusal splints (group B) for intraoperative surgical planning transfer. The observed patients underwent bimaxillary osteotomies and, if necessary, an additional genioplasty. Both techniques were evaluated by applying 13 hard tissue parameters to compare the 3D orthognathic planning (T0) with the postoperative result (T1) using 3D cephalometry. The CAD/CAM splints showed significant better precision for the maxilla (ΔT orthognathic planning, which is more precise compared with the conventional arbitrary occlusal splints.

  6. Time- and Computation-Efficient Calibration of MEMS 3D Accelerometers and Gyroscopes

    Directory of Open Access Journals (Sweden)

    Sara Stančin

    2014-08-01

    Full Text Available We propose calibration methods for microelectromechanical system (MEMS 3D accelerometers and gyroscopes that are efficient in terms of time and computational complexity. The calibration process for both sensors is simple, does not require additional expensive equipment, and can be performed in the field before or between motion measurements. The methods rely on a small number of defined calibration measurements that are used to obtain the values of 12 calibration parameters. This process enables the static compensation of sensor inaccuracies. The values detected by the 3D sensor are interpreted using a generalized 3D sensor model. The model assumes that the values detected by the sensor are equal to the projections of the measured value on the sensor sensitivity axes. Although this finding is trivial for 3D accelerometers, its validity for 3D gyroscopes is not immediately apparent; thus, this paper elaborates on this latter topic. For an example sensor device, calibration parameters were established using calibration measurements of approximately 1.5 min in duration for the 3D accelerometer and 2.5 min in duration for the 3D gyroscope. Correction of each detected 3D value using the established calibration parameters in further measurements requires only nine addition and nine multiplication operations.

  7. Time- and computation-efficient calibration of MEMS 3D accelerometers and gyroscopes.

    Science.gov (United States)

    Stančin, Sara; Tomažič, Sašo

    2014-08-13

    We propose calibration methods for microelectromechanical system (MEMS) 3D accelerometers and gyroscopes that are efficient in terms of time and computational complexity. The calibration process for both sensors is simple, does not require additional expensive equipment, and can be performed in the field before or between motion measurements. The methods rely on a small number of defined calibration measurements that are used to obtain the values of 12 calibration parameters. This process enables the static compensation of sensor inaccuracies. The values detected by the 3D sensor are interpreted using a generalized 3D sensor model. The model assumes that the values detected by the sensor are equal to the projections of the measured value on the sensor sensitivity axes. Although this finding is trivial for 3D accelerometers, its validity for 3D gyroscopes is not immediately apparent; thus, this paper elaborates on this latter topic. For an example sensor device, calibration parameters were established using calibration measurements of approximately 1.5 min in duration for the 3D accelerometer and 2.5 min in duration for the 3D gyroscope. Correction of each detected 3D value using the established calibration parameters in further measurements requires only nine addition and nine multiplication operations.

  8. Extended gray level co-occurrence matrix computation for 3D image volume

    Science.gov (United States)

    Salih, Nurulazirah M.; Dewi, Dyah Ekashanti Octorina

    2017-02-01

    Gray Level Co-occurrence Matrix (GLCM) is one of the main techniques for texture analysis that has been widely used in many applications. Conventional GLCMs usually focus on two-dimensional (2D) image texture analysis only. However, a three-dimensional (3D) image volume requires specific texture analysis computation. In this paper, an extended 2D to 3D GLCM approach based on the concept of multiple 2D plane positions and pixel orientation directions in the 3D environment is proposed. The algorithm was implemented by breaking down the 3D image volume into 2D slices based on five different plane positions (coordinate axes and oblique axes) resulting in 13 independent directions, then calculating the GLCMs. The resulted GLCMs were averaged to obtain normalized values, then the 3D texture features were calculated. A preliminary examination was performed on a 3D image volume (64 x 64 x 64 voxels). Our analysis confirmed that the proposed technique is capable of extracting the 3D texture features from the extended GLCMs approach. It is a simple and comprehensive technique that can contribute to the 3D image analysis.

  9. 3D computer-assisted assessment of complicated penetrating foreign bodies cases in ENT practice.

    Science.gov (United States)

    Vaiman, Michael; Bekerman, Inessa; Puterman, Max

    2009-10-01

    A retrospective research was performed in order to evaluate three-dimensional (3D) computer-assisted detection of penetrating foreign bodies (FB) in the ENT practice in order to assess its usefulness and to specify its application. FBs in the head and neck were detected using 3D CT imaging in order to assess the usefulness of 3D images in the ENT operative practice. Three blinded surgeons were involved in comparison between plain and 3D CT images in order to assess 3D usefulness for precise formulation of a surgical plan. The observed relationship of the FBs to anatomical structures of the ethmoidal sinuses, eye orbit, and neck tissues was found instrumental for surgeon's decision making in planning the approach to operative removal of the FB. It helps to understand the relationships between a FB and surrounding anatomical structures better then the plain X-rays or CT-scan. There was no significant difference in cost between plain CT and 3D images. 3D computer-assisted detection of FBs increase our diagnostic abilities and appears to be a valuable addition to our diagnostic technique. Its main importance, however, lies in its capacity to help a surgeon plan an operation much more carefully avoiding improvisation during the operation itself.

  10. Ground truth evaluation of computer vision based 3D reconstruction of synthesized and real plant images

    DEFF Research Database (Denmark)

    Nielsen, Michael; Andersen, Hans Jørgen; Slaughter, David

    2007-01-01

    There is an increasing interest in using 3D computer vision in precision agriculture. This calls for better quantitative evaluation and understanding of computer vision methods. This paper proposes a test framework using ray traced crop scenes that allows in-depth analysis of algorithm performance...

  11. 3-D field computation: The near-triumph of commerical codes

    Energy Technology Data Exchange (ETDEWEB)

    Turner, L.R.

    1995-07-01

    In recent years, more and more of those who design and analyze magnets and other devices are using commercial codes rather than developing their own. This paper considers the commercial codes and the features available with them. Other recent trends with 3-D field computation include parallel computation and visualization methods such as virtual reality systems.

  12. 3D COMPUTER SIMULATION FOR LIGNIFICATION OF ANCIENT CHINESE TIMBER BUILDINGS

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A pioneer research work was carried out by investigators engaged in surveying and mapping for describing ancient Chinese timber buildings by 3D frame graphs w ith a computer.Users can know the structural layers and the assembly process of the se buildings if the frame graphs are processed further with a computer model.Th is can be implemented by computer simulation technique.This technique display t he raw data on the screen of a computer and interactively manage them by combini ng technologies from computer graphics and image processing,multi-media technol ogy,artificial intelligence,highly parallel real-time computation technique an d human behavior science.This paper presents the implementing procedure of ligni fi cation simulation for large-sized wooden buildings as well as 3D dynamic assembl y of these buildings under the 3DS MAX environment.The results from computer sim ulation are also shown in the paper.

  13. 3D-SoftChip: A Novel Architecture for Next-Generation Adaptive Computing Systems

    Directory of Open Access Journals (Sweden)

    Lee Mike Myung-Ok

    2006-01-01

    Full Text Available This paper introduces a novel architecture for next-generation adaptive computing systems, which we term 3D-SoftChip. The 3D-SoftChip is a 3-dimensional (3D vertically integrated adaptive computing system combining state-of-the-art processing and 3D interconnection technology. It comprises the vertical integration of two chips (a configurable array processor and an intelligent configurable switch through an indium bump interconnection array (IBIA. The configurable array processor (CAP is an array of heterogeneous processing elements (PEs, while the intelligent configurable switch (ICS comprises a switch block, 32-bit dedicated RISC processor for control, on-chip program/data memory, data frame buffer, along with a direct memory access (DMA controller. This paper introduces the novel 3D-SoftChip architecture for real-time communication and multimedia signal processing as a next-generation computing system. The paper further describes the advanced HW/SW codesign and verification methodology, including high-level system modeling of the 3D-SoftChip using SystemC, being used to determine the optimum hardware specification in the early design stage.

  14. Hierarchical Statistical 3D ' Atomistic' Simulation of Decanano MOSFETs: Drift-Diffusion, Hydrodynamic and Quantum Mechanical Approaches

    Science.gov (United States)

    Asenov, Asen; Brown, A. R.; Slavcheva, G.; Davies, J. H.

    2000-01-01

    When MOSFETs are scaled to deep submicron dimensions the discreteness and randomness of the dopant charges in the channel region introduces significant fluctuations in the device characteristics. This effect, predicted 20 year ago, has been confirmed experimentally and in simulation studies. The impact of the fluctuations on the functionality, yield, and reliability of the corresponding systems shifts the paradigm of the numerical device simulation. It becomes insufficient to simulate only one device representing one macroscopical design in a continuous charge approximation. An ensemble of macroscopically identical but microscopically different devices has to be characterized by simulation of statistically significant samples. The aims of the numerical simulations shift from predicting the characteristics of a single device with continuous doping towards estimating the mean values and the standard deviations of basic design parameters such as threshold voltage, subthreshold slope, transconductance, drive current, etc. for the whole ensemble of 'atomistically' different devices in the system. It has to be pointed out that even the mean values obtained from 'atomistic' simulations are not identical to the values obtained from continuous doping simulations. In this paper we present a hierarchical approach to the 'atomistic' simulation of aggressively scaled decanano MOSFETs. A full scale 3D drift-diffusion'atomostic' simulation approach is first described and used for verification of the more economical, but also more restricted, options. To reduce the processor time and memory requirements at high drain voltage we have developed a self-consistent option based on a thin slab solution of the current continuity equation only in the channel region. This is coupled to the Poisson's equation solution in the whole simulation domain in the Gummel iteration cycles. The accuracy of this approach is investigated in comparison with the full self-consistent solution. At low drain

  15. 3D-CT vascular setting protocol using computer graphics for the evaluation of maxillofacial lesions

    Directory of Open Access Journals (Sweden)

    CAVALCANTI Marcelo de Gusmão Paraiso

    2001-01-01

    Full Text Available In this paper we present the aspect of a mandibular giant cell granuloma in spiral computed tomography-based three-dimensional (3D-CT reconstructed images using computer graphics, and demonstrate the importance of the vascular protocol in permitting better diagnosis, visualization and determination of the dimensions of the lesion. We analyzed 21 patients with maxillofacial lesions of neoplastic and proliferative origins. Two oral and maxillofacial radiologists analyzed the images. The usefulness of interactive 3D images reconstructed by means of computer graphics, especially using a vascular setting protocol for qualitative and quantitative analyses for the diagnosis, determination of the extent of lesions, treatment planning and follow-up, was demonstrated. The technique is an important adjunct to the evaluation of lesions in relation to axial CT slices and 3D-CT bone images.

  16. Meta!Blast computer game: a pipeline from science to 3D art to education

    Science.gov (United States)

    Schneller, William; Campbell, P. J.; Bassham, Diane; Wurtele, Eve Syrkin

    2012-03-01

    Meta!Blast (http://www.metablast.org) is designed to address the challenges students often encounter in understanding cell and metabolic biology. Developed by faculty and students in biology, biochemistry, computer science, game design, pedagogy, art and story, Meta!Blast is being created using Maya (http://usa.autodesk.com/maya/) and the Unity 3D (http://unity3d.com/) game engine, for Macs and PCs in classrooms; it has also been exhibited in an immersive environment. Here, we describe the pipeline from protein structural data and holographic information to art to the threedimensional (3D) environment to the game engine, by which we provide a publicly-available interactive 3D cellular world that mimics a photosynthetic plant cell.

  17. Bayesian 3D X-ray computed tomography image reconstruction with a scaled Gaussian mixture prior model

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Li; Gac, Nicolas; Mohammad-Djafari, Ali [Laboratoire des Signaux et Systèmes 3, Rue Joliot-Curie 91192 Gif sur Yvette (France)

    2015-01-13

    In order to improve quality of 3D X-ray tomography reconstruction for Non Destructive Testing (NDT), we investigate in this paper hierarchical Bayesian methods. In NDT, useful prior information on the volume like the limited number of materials or the presence of homogeneous area can be included in the iterative reconstruction algorithms. In hierarchical Bayesian methods, not only the volume is estimated thanks to the prior model of the volume but also the hyper parameters of this prior. This additional complexity in the reconstruction methods when applied to large volumes (from 512{sup 3} to 8192{sup 3} voxels) results in an increasing computational cost. To reduce it, the hierarchical Bayesian methods investigated in this paper lead to an algorithm acceleration by Variational Bayesian Approximation (VBA) [1] and hardware acceleration thanks to projection and back-projection operators paralleled on many core processors like GPU [2]. In this paper, we will consider a Student-t prior on the gradient of the image implemented in a hierarchical way [3, 4, 1]. Operators H (forward or projection) and H{sup t} (adjoint or back-projection) implanted in multi-GPU [2] have been used in this study. Different methods will be evalued on synthetic volume 'Shepp and Logan' in terms of quality and time of reconstruction. We used several simple regularizations of order 1 and order 2. Other prior models also exists [5]. Sometimes for a discrete image, we can do the segmentation and reconstruction at the same time, then the reconstruction can be done with less projections.

  18. Self-Assembled Hierarchical Formation of Conjugated 3D Cobalt Oxide Nanobead-CNT-Graphene Nanostructure Using Microwaves for High-Performance Supercapacitor Electrode.

    Science.gov (United States)

    Kumar, Rajesh; Singh, Rajesh Kumar; Dubey, Pawan Kumar; Singh, Dinesh Pratap; Yadav, Ram Manohar

    2015-07-15

    Here we report the electrochemical performance of a interesting three-dimensional (3D) structures comprised of zero-dimensional (0D) cobalt oxide nanobeads, one-dimensional (1D) carbon nanotubes and two-dimensional (2D) graphene, stacked hierarchically. We have synthesized 3D self-assembled hierarchical nanostructure comprised of cobalt oxide nanobeads (Co-nb), carbon nanotubes (CNTs), and graphene nanosheets (GNSs) for high-performance supercapacitor electrode application. This 3D self-assembled hierarchical nanostructure Co3O4 nanobeads-CNTs-GNSs (3D:Co-nb@CG) is grown at a large scale (gram) through simple, facile, and ultrafast microwave irradiation (MWI). In 3D:Co-nb@CG nanostructure, Co3O4 nanobeads are attached to the CNT surfaces grown on GNSs. Our ultrafast, one-step approach not only renders simultaneous growth of cobalt oxide and CNTs on graphene nanosheets but also institutes the intrinsic dispersion of carbon nanotubes and cobalt oxide within a highly conductive scaffold. The 3D:Co-nb@CG electrode shows better electrochemical performance with a maximum specific capacitance of 600 F/g at the charge/discharge current density of 0.7A/g in KOH electrolyte, which is 1.56 times higher than that of Co3O4-decorated graphene (Co-np@G) nanostructure. This electrode also shows a long cyclic life, excellent rate capability, and high specific capacitance. It also shows high stability after few cycles (550 cycles) and exhibits high capacitance retention behavior. It was observed that the supercapacitor retained 94.5% of its initial capacitance even after 5000 cycles, indicating its excellent cyclic stability. The synergistic effect of the 3D:Co-nb@CG appears to contribute to the enhanced electrochemical performances.

  19. 3D computation of non-linear eddy currents: Variational method and superconducting cubic bulk

    Science.gov (United States)

    Pardo, Enric; Kapolka, Milan

    2017-09-01

    Computing the electric eddy currents in non-linear materials, such as superconductors, is not straightforward. The design of superconducting magnets and power applications needs electromagnetic computer modeling, being in many cases a three-dimensional (3D) problem. Since 3D problems require high computing times, novel time-efficient modeling tools are highly desirable. This article presents a novel computing modeling method based on a variational principle. The self-programmed implementation uses an original minimization method, which divides the sample into sectors. This speeds-up the computations with no loss of accuracy, while enabling efficient parallelization. This method could also be applied to model transients in linear materials or networks of non-linear electrical elements. As example, we analyze the magnetization currents of a cubic superconductor. This 3D situation remains unknown, in spite of the fact that it is often met in material characterization and bulk applications. We found that below the penetration field and in part of the sample, current flux lines are not rectangular and significantly bend in the direction parallel to the applied field. In conclusion, the presented numerical method is able to time-efficiently solve fully 3D situations without loss of accuracy.

  20. Interpretation of mandibular condyle fractures using 2D- and 3D-computed tomography

    Directory of Open Access Journals (Sweden)

    Costa e Silva Adriana Paula de Andrade da

    2003-01-01

    Full Text Available Computed tomography (CT has been increasingly used in the examination of patients with craniofacial trauma. This technique is useful in the examination of the temporomandibular joint and allows the diagnosis of fractures of the mandibular condyle. Aiming to verify whether the three-dimensional reconstructed images from CT (3D-CT produce more effective visual information than the two-dimensional (2D-CT ones, we evaluated 2D-CT and 3D-CT examinations of 18 patients with mandibular condyle fractures. We observed that 2D-CT and 3D-CT reconstructed images produced similar information for the diagnosis of fractures of the mandibular condyle, although the 3D-CT allowed a better visualization of the position and displacement of bone fragments, as well as the comminution of fractures. These results, together with the possibility of refining and manipulating perspectives in 3D images, reinforce the importance of its use in the surgical planning and evaluation of treatment. We concluded that 3D-CT presented supplementary information for a more effective diagnosis of mandibular condyle fractures.

  1. Novel fully integrated computer system for custom footwear: from 3D digitization to manufacturing

    Science.gov (United States)

    Houle, Pascal-Simon; Beaulieu, Eric; Liu, Zhaoheng

    1998-03-01

    This paper presents a recently developed custom footwear system, which integrates 3D digitization technology, range image fusion techniques, a 3D graphical environment for corrective actions, parametric curved surface representation and computer numerical control (CNC) machining. In this system, a support designed with the help of biomechanics experts can stabilize the foot in a correct and neutral position. The foot surface is then captured by a 3D camera using active ranging techniques. A software using a library of documented foot pathologies suggests corrective actions on the orthosis. Three kinds of deformations can be achieved. The first method uses previously scanned pad surfaces by our 3D scanner, which can be easily mapped onto the foot surface to locally modify the surface shape. The second kind of deformation is construction of B-Spline surfaces by manipulating control points and modifying knot vectors in a 3D graphical environment to build desired deformation. The last one is a manual electronic 3D pen, which may be of different shapes and sizes, and has an adjustable 'pressure' information. All applied deformations should respect a G1 surface continuity, which ensure that the surface can accustom a foot. Once the surface modification process is completed, the resulting data is sent to manufacturing software for CNC machining.

  2. Optimisation of coronary vascular territorial 3D echocardiographic strain imaging using computed tomography

    DEFF Research Database (Denmark)

    de Knegt, Martina Chantal; Fuchs, A; Weeke, P;

    2016-01-01

    Current echocardiographic assessments of coronary vascular territories use the 17-segment model and are based on general assumptions of coronary vascular distribution. Fusion of 3D echocardiography (3DE) with multidetector computed tomography (MDCT) derived coronary anatomy may provide a more acc...

  3. Practical limitations of cone-beam computed tomography in 3D cephalometry

    NARCIS (Netherlands)

    Damstra, Janalt; Fourie, Zacharias; Ren, Yijin

    2011-01-01

    3D cone beam computed tomography (CBCT) images offer a unique and new appreciation of the anatomical structures and underlying anomalies not possible with conventional radiographs. However, in almost all aspects of CBCT imaging, from utilization to application, inherent limitations and pitfalls exis

  4. Analysis of thoracic aorta hemodynamics using 3D particle tracking velocimetry and computational fluid dynamics.

    Science.gov (United States)

    Gallo, Diego; Gülan, Utku; Di Stefano, Antonietta; Ponzini, Raffaele; Lüthi, Beat; Holzner, Markus; Morbiducci, Umberto

    2014-09-22

    Parallel to the massive use of image-based computational hemodynamics to study the complex flow establishing in the human aorta, the need for suitable experimental techniques and ad hoc cases for the validation and benchmarking of numerical codes has grown more and more. Here we present a study where the 3D pulsatile flow in an anatomically realistic phantom of human ascending aorta is investigated both experimentally and computationally. The experimental study uses 3D particle tracking velocimetry (PTV) to characterize the flow field in vitro, while finite volume method is applied to numerically solve the governing equations of motion in the same domain, under the same conditions. Our findings show that there is an excellent agreement between computational and measured flow fields during the forward flow phase, while the agreement is poorer during the reverse flow phase. In conclusion, here we demonstrate that 3D PTV is very suitable for a detailed study of complex unsteady flows as in aorta and for validating computational models of aortic hemodynamics. In a future step, it will be possible to take advantage from the ability of 3D PTV to evaluate velocity fluctuations and, for this reason, to gain further knowledge on the process of transition to turbulence occurring in the thoracic aorta. Copyright © 2014 Elsevier Ltd. All rights reserved.

  5. Using 3D Computer Graphics Multimedia to Motivate Preservice Teachers' Learning of Geometry and Pedagogy

    Science.gov (United States)

    Goodson-Espy, Tracy; Lynch-Davis, Kathleen; Schram, Pamela; Quickenton, Art

    2010-01-01

    This paper describes the genesis and purpose of our geometry methods course, focusing on a geometry-teaching technology we created using NVIDIA[R] Chameleon demonstration. This article presents examples from a sequence of lessons centered about a 3D computer graphics demonstration of the chameleon and its geometry. In addition, we present data…

  6. Single-unit-cell layer established Bi 2 WO 6 3D hierarchical architectures: Efficient adsorption, photocatalysis and dye-sensitized photoelectrochemical performance

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Hongwei; Cao, Ranran; Yu, Shixin; Xu, Kang; Hao, Weichang; Wang, Yonggang; Dong, Fan; Zhang, Tierui; Zhang, Yihe

    2017-12-01

    Single-layer catalysis sparks huge interests and gains widespread attention owing to its high activity. Simultaneously, three-dimensional (3D) hierarchical structure can afford large surface area and abundant reactive sites, contributing to high efficiency. Herein, we report an absorbing single-unit-cell layer established Bi2WO6 3D hierarchical architecture fabricated by a sodium dodecyl benzene sulfonate (SDBS)-assisted assembled strategy. The DBS- long chains can adsorb on the (Bi2O2)2+ layers and hence impede stacking of the layers, resulting in the single-unit-cell layer. We also uncovered that SDS with a shorter chain is less effective than SDBS. Due to the sufficient exposure of surface O atoms, single-unit-cell layer 3D Bi2WO6 shows strong selectivity for adsorption on multiform organic dyes with different charges. Remarkably, the single-unit-cell layer 3D Bi2WO6 casts profoundly enhanced photodegradation activity and especially a superior photocatalytic H2 evolution rate, which is 14-fold increase in contrast to the bulk Bi2WO6. Systematic photoelectrochemical characterizations disclose that the substantially elevated carrier density and charge separation efficiency take responsibility for the strengthened photocatalytic performance. Additionally, the possibility of single-unit-cell layer 3D Bi2WO6 as dye-sensitized solar cells (DSSC) has also been attempted and it was manifested to be a promising dye-sensitized photoanode for oxygen evolution reaction (ORR). Our work not only furnish an insight into designing single-layer assembled 3D hierarchical architecture, but also offer a multi-functional material for environmental and energy applications.

  7. A novel 3D structure composed of strings of hierarchical TiO{sub 2} spheres formed on TiO{sub 2} nanobelts with high photocatalytic properties

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, Yongjian [State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing 102206 (China); Li, Meicheng, E-mail: mcli@ncepu.edu.cn [State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing 102206 (China); Suzhou Institute, North China Electric Power University, Suzhou 215123 (China); Song, Dandan; Li, Xiaodan; Yu, Yue [State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing 102206 (China)

    2014-03-15

    A novel hierarchical titanium dioxide (TiO{sub 2}) composite nanostructure with strings of anatase TiO{sub 2} hierarchical micro-spheres and rutile nanobelts framework (TiO{sub 2} HSN) is successfully synthesized via a one-step hydrothermal method. Particularly, the strings of hierarchical spheres are assembled by very thin TiO{sub 2} nanosheets, which are composed of highly crystallized anatase nanocrystals. Meanwhile, the HSN has a large surface area of 191 m{sup 2}/g, which is about 3 times larger than Degussa P25. More importantly, the photocatalytic activity of HSN and P25 were evaluated by the photocatalytic oxidation decomposition of methyl orange (MO) under UV light illumination, and the TiO{sub 2} HSN shows enhanced photocatalytic activity compared with Degussa P25, as result of its continuous hierarchical structures, special conductive channel and large specific surface area. With these features, the hierarchical TiO{sub 2} may have more potential applications in the fields of dye-sensitized solar cells and lithium ion batteries. -- Graphical abstract: Novel TiO{sub 2} with anatase micro-spheres and rutile nanobelts is synthesized. Enhanced photocatalysis is attributed to hierarchical structures (3D spheres), conductive channel (1D nanobelts) and large specific surface area (2D nanosheet). Highlights: • The novel TiO{sub 2} nanostructure (HSN) is fabricated for the first time. • HSN is composed of strings of anatase hierarchical spheres and rutile nanobelt. • HSN presents a larger S{sub BET} of 191 m{sup 2}/g, 3 times larger than the Degussa P25 (59 m{sup 2}/g). • HSN owns three kinds of dimensional TiO{sub 2} (1D, 2D and 3D) simultaneously. • HSN exhibits better photocatalytic performance compared with Degussa P25.

  8. 3D rod-like copper oxide with nanowire hierarchical structure: Ultrasound assisted synthesis from Cu2(OH)3NO3 precursor, optical properties and formation mechanism

    Science.gov (United States)

    Ba, Ningning; Zhu, Lianjie; Li, Hongbin; Zhang, Guangzhi; Li, Jianfa; Sun, Jingfeng

    2016-03-01

    3-dimensional (3D) rod-like CuO with nanowire hierarchical structure has been synthesized successfully by a facile ultrasound assisted method combined with thermal conversion, using rouaite Cu2(OH)3NO3 as the precursor. The product was characterized by XRD, SEM, TEM, HRTEM and FT-IR spectrum. Its optical properties were studied by means of UV-Vis diffuse reflectance absorption spectroscopy and photoluminescence (PL) spectrum. Series of control experiments have been performed to explore influencing factors to the product morphologies and a possible formation mechanism has been proposed. The results show that each CuO rod assembled by tens of nanowires is 200-300 nm in diameter and about 1000 nm in length. Each nanowire contains many interconnected nanoparticles with sizes of about 15 nm. Particularly, ultrasound processing was found beneficial to the formation of the 3D rod-like CuO with nanowire hierarchical structure.

  9. Organ printing: computer-aided jet-based 3D tissue engineering.

    Science.gov (United States)

    Mironov, Vladimir; Boland, Thomas; Trusk, Thomas; Forgacs, Gabor; Markwald, Roger R

    2003-04-01

    Tissue engineering technology promises to solve the organ transplantation crisis. However, assembly of vascularized 3D soft organs remains a big challenge. Organ printing, which we define as computer-aided, jet-based 3D tissue-engineering of living human organs, offers a possible solution. Organ printing involves three sequential steps: pre-processing or development of "blueprints" for organs; processing or actual organ printing; and postprocessing or organ conditioning and accelerated organ maturation. A cell printer that can print gels, single cells and cell aggregates has been developed. Layer-by-layer sequentially placed and solidified thin layers of a thermo-reversible gel could serve as "printing paper". Combination of an engineering approach with the developmental biology concept of embryonic tissue fluidity enables the creation of a new rapid prototyping 3D organ printing technology, which will dramatically accelerate and optimize tissue and organ assembly.

  10. Hydrothermal synthesis of 3D hierarchical flower-like MoSe{sub 2} microspheres and their adsorption performances for methyl orange

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Hua, E-mail: tanghua@mail.ujs.edu.cn; Huang, Hong; Wang, Xiaoshuai; Wu, Kongqiang; Tang, Guogang; Li, Changsheng

    2016-08-30

    Highlights: • 3D hierarchical flower-like MoSe{sub 2} microspheres have been fabricated via a hydrothermal method. • A possible evolution process of 3D hierarchical flower-like MoSe{sub 2} microspheres was discussed. • Flower-like MoSe{sub 2} microspheres exhibit excellent adsorption properties for dye methyl orange removal from aqueous solution. - Abstract: In this paper, we report a facile and versatile modified hydrothermal method for synthesis of three-dimensional (3D) hierarchical flower-like MoSe{sub 2} microspheres using selenium powders and sodium molybdate as raw materials. The as-prepared MoSe{sub 2} was investigated for application as an adsorbent for the removal of dye contaminants from water. Power X-ray diffraction (XRD), energy dispersive spectroscopy (EDS), scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscope (XPS) and N{sub 2} adsorption-desorption analysis were carried out to study the microstructure of the as-synthesized product. A possible growth mechanism of MoSe{sub 2} flower-like microspheres was preliminarily proposed on the basis of observation of a time-dependent morphology evolution process. Moreover, the MoSe{sub 2} sample exhibited good adsorption properties, with maximum adsorption capacity of 36.91 mg/g for methyl orange. The adsorption process of methyl orange on 3D hierarchical flower-like MoSe{sub 2} microspheres was systematically investigated, which was found to obey the pseudo-second-order rate equation and Langmuir adsorption model.

  11. An investigation of low-dose 3D scout scans for computed tomography

    Science.gov (United States)

    Gomes, Juliana; Gang, Grace J.; Mathews, Aswin; Stayman, J. Webster

    2017-03-01

    Purpose: Commonly 2D scouts or topograms are used prior to CT scan acquisition. However, low-dose 3D scouts could potentially provide additional information for more effective patient positioning and selection of acquisition protocols. We propose using model-based iterative reconstruction to reconstruct low exposure tomographic data to maintain image quality in both low-dose 3D scouts and reprojected topograms based on those 3D scouts. Methods: We performed tomographic acquisitions on a CBCT test-bench using a range of exposure settings from 16.6 to 231.9 total mAs. Both an anthropomorphic phantom and a 32 cm CTDI phantom were scanned. The penalized-likelihood reconstructions were made using Matlab and CUDA libraries and reconstruction parameters were tuned to determine the best regularization strength and delta parameter. RMS error between reconstructions and the highest exposure reconstruction were computed, and CTDIW values were reported for each exposure setting. RMS error for reprojected topograms were also computed. Results: We find that we are able to produce low-dose (0.417 mGy) 3D scouts that show high-contrast and large anatomical features while maintaining the ability to produce traditional topograms. Conclusions: We demonstrated that iterative reconstruction can mitigate noise in very low exposure CT acquisitions to enable 3D CT scout. Such additional 3D information may lead to improved protocols for patient positioning and acquisition refinements as well as a number of advanced dose reduction strategies that require localization of anatomical features and quantities that are not provided by simple 2D topograms.

  12. Analysis of 3-D images of dental imprints using computer vision

    Science.gov (United States)

    Aubin, Michele; Cote, Jean; Laurendeau, Denis; Poussart, Denis

    1992-05-01

    This paper addressed two important aspects of dental analysis: (1) location and (2) identification of the types of teeth by means of 3-D image acquisition and segmentation. The 3-D images of both maxillaries are acquired using a wax wafer as support. The interstices between teeth are detected by non-linear filtering of the 3-D and grey-level data. Two operators are presented: one for the detection of the interstices between incisors, canines, and premolars and one for those between molars. Teeth are then identified by mapping the imprint under analysis on the computer model of an 'ideal' imprint. For the mapping to be valid, a set of three reference points is detected on the imprint. Then, the points are put in correspondence with similar points on the model. Two such points are chosen based on a least-squares fit of a second-order polynomial of the 3-D data in the area of canines. This area is of particular interest since the canines show a very characteristic shape and are easily detected on the imprint. The mapping technique is described in detail in the paper as well as pre-processing of the 3-D profiles. Experimental results are presented for different imprints.

  13. Controlled synthesis, asymmetrical transport behavior and luminescence properties of lanthanide doped ZnO mushroom-like 3D hierarchical structures.

    Science.gov (United States)

    Yue, Dan; Lu, Wei; Jin, Lin; Li, Chunyang; Luo, Wen; Wang, Mengnan; Wang, Zhenling; Hao, Jianhua

    2014-11-21

    Lanthanide doped ZnO mushroom-like 3D hierarchical structures have been fabricated by polyol-mediated method and characterized by various microstructural and optical techniques. The results indicate that the as-prepared ZnO:Ln(3+) (Ln = Tb, Eu) samples have a hexagonal phase structure and possess a mushroom-like 3D hierarchical morphology. The length of the whole mushroom from stipe bottom to pileus top is about 1.0 μm, and the diameters of pileus and stipe are about 0.8 μm and 0.4 μm, respectively. It is found that the flow of N2 is the key parameter for the formation of the novel ZnO structure and the addition of (NH4)2HPO4 has a prominent effect on the phase structure and the growth of mushroom-like morphology. The potential mechanism of forming this morphology is proposed. The pileus of the formed mushroom is assembled by several radial ZnO:Ln(3+) nanorods, whereas the stipe is composed of over layered ZnO:Ln(3+) nanosheets. Moreover, asymmetrical I-V characteristic curves of ZnO:Ln(3+) mushrooms indicate that the texture composition of the 3D hierarchical morphology might lead to the asymmetrical transport behavior of electrical conductivity. Lanthanide doped ZnO samples can exhibit red or green emission under the excitation of UV light.

  14. 3D hierarchically patterned tubular NiSe with nano-/microstructures for Li ion battery design.

    Science.gov (United States)

    Mi, Liwei; Sun, Hui; Ding, Qi; Chen, Weihua; Liu, Chuntai; Hou, Hongwei; Zheng, Zhi; Shen, Changyu

    2012-10-28

    Tubular nickel selenide (NiSe) crystals with hierarchical structures were successfully fabricated using a one-step solvothermal method in moderate conditions, in which ethylenediamine and ethylene glycol were used as the mixed solvent. The growth of hierarchical NiSe microtubes from NiSe microflakes was achieved without surfactants or other chemical additives by changing the reaction time. When the as-synthesized NiSe microtubes were employed as cathode materials for lithium-ion batteries, the initial discharge capacity of hierarchical NiSe microtubes reached 410.7 mAh g(-1).

  15. A Computer Vision Method for 3D Reconstruction of Curves-Marked Free-Form Surfaces

    Institute of Scientific and Technical Information of China (English)

    Xiong Hanwei; Zhang Xiangwei

    2001-01-01

    Visual method is now broadly used in reverse engineering for 3D reconstruction. Thetraditional computer vision methods are feature-based, i.e., they require that the objects must revealfeatures owing to geometry or textures. For textureless free-form surfaces, dense feature points areadded artificially. In this paper, a new method is put forward combining computer vision with CAGD.The surface is subdivided into N-side Gregory patches using marked curves, and a stereo algorithm isused to reconstruct the curves. Then, the cross boundary tangent vector is computed throughreflectance analysis. At last, the whole surface can be reconstructed by jointing these patches withG1 continuity.

  16. Measurement of facial soft tissues thickness using 3D computed tomographic images

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Ho Gul; Kim, Kee Deog; Shin, Dong Won; Hu, Kyung Seok; Lee, Jae Bum; Park, Hyok; Park, Chang Seo [Yonsei Univ. Hospital, Seoul (Korea, Republic of); Han, Seung Ho [Catholic Univ. of Korea, Seoul (Korea, Republic of)

    2006-03-15

    To evaluate accuracy and reliability of program to measure facial soft tissue thickness using 3D computed tomographic images by comparing with direct measurement. One cadaver was scanned with a Helical CT with 3 mm slice thickness and 3 mm/sec table speed. The acquired data was reconstructed with 1.5 mm reconstruction interval and the images were transferred to a personal computer. The facial soft tissue thickness were measured using a program developed newly in 3D image. For direct measurement, the cadaver was cut with a bone cutter and then a ruler was placed above the cut side. The procedure was followed by taking pictures of the facial soft tissues with a high-resolution digital camera. Then the measurements were done in the photographic images and repeated for ten times. A repeated measure analysis of variance was adopted to compare and analyze the measurements resulting from the two different methods. Comparison according to the areas was analyzed by Mann-Whitney test. There were no statistically significant differences between the direct measurements and those using the 3D images(p>0.05). There were statistical differences in the measurements on 17 points but all the points except 2 points showed a mean difference of 0.5 mm or less. The developed software program to measure the facial soft tissue thickness using 3D images was so accurate that it allows to measure facial soft tissue thickness more easily in forensic science and anthropology.

  17. Accurate Numerical Methods for Computing 2D and 3D Robot Workspace

    Directory of Open Access Journals (Sweden)

    Yi Cao

    2011-12-01

    Full Text Available Exact computation of the shape and size of robot manipulator workspace is very important for its analysis and optimum design. First, the drawbacks of the previous methods based on Monte Carlo are pointed out in the paper, and then improved strategies are presented systematically. In order to obtain more accurate boundary points of two-dimensional (2D robot workspace, the Beta distribution is adopted to generate random variables of robot joints. And then, the area of workspace is acquired by computing the area of the polygon what is a closed path by connecting the boundary points together. For comparing the errors of workspaces which are generated by the previous and the improved method from shape and size, one planar robot manipulator is taken as example. A spatial robot manipulator is used to illustrate that the methods can be used not only on planar robot manipulator, but also on the spatial. The optimal parameters are proposed in the paper to computer the shape and size of 2D and 3D workspace. Finally, we provided the computation time and discussed the generation of 3D workspace which is based on 3D reconstruction from the boundary points.

  18. 3D Hierarchical Pt-Nitrogen-Doped-Graphene-Carbonized Commercially Available Sponge as a Superior Electrocatalyst for Low-Temperature Fuel Cells.

    Science.gov (United States)

    Zhao, Lei; Sui, Xu-Lei; Li, Jia-Long; Zhang, Jing-Jia; Zhang, Li-Mei; Wang, Zhen-Bo

    2016-06-29

    Three-dimensional hierarchical nitrogen-doped graphene (3D-NG) frameworks were successfully fabricated through a feasible solution dip-coating method with commercially available sponges as the initial backbone. A spongy template can help hinder the graphene plates restacking in the period of the annealing process. The Pt/3D-NG catalyst was synthesized employing a polyol reduction process. The resultant Pt/3D-NG exhibits 2.3 times higher activity for methanol electro-oxidation along with the improvement in stability as compared with Pt/G owing to their favorable features including large specific surface area, high pore volume, high N doping level, and the homogeneous dispersion of Pt nanoparticles. Besides, Pt/3D-NG also presents high oxygen reduction reaction (ORR) performance in acid media when compared with Pt/3D-G and Pt/G. This work raises a valid solution for the fabrication of 3D functional freestanding graphene-based composites for a variety of applications in fuel cell catalysis, energy storage, and conversion.

  19. Integration of 3D anatomical data obtained by CT imaging and 3D optical scanning for computer aided implant surgery

    Directory of Open Access Journals (Sweden)

    Paoli Alessandro

    2011-02-01

    Full Text Available Abstract Background A precise placement of dental implants is a crucial step to optimize both prosthetic aspects and functional constraints. In this context, the use of virtual guiding systems has been recognized as a fundamental tool to control the ideal implant position. In particular, complex periodontal surgeries can be performed using preoperative planning based on CT data. The critical point of the procedure relies on the lack of accuracy in transferring CT planning information to surgical field through custom-made stereo-lithographic surgical guides. Methods In this work, a novel methodology is proposed for monitoring loss of accuracy in transferring CT dental information into periodontal surgical field. The methodology is based on integrating 3D data of anatomical (impression and cast and preoperative (radiographic template models, obtained by both CT and optical scanning processes. Results A clinical case, relative to a fully edentulous jaw patient, has been used as test case to assess the accuracy of the various steps concurring in manufacturing surgical guides. In particular, a surgical guide has been designed to place implants in the bone structure of the patient. The analysis of the results has allowed the clinician to monitor all the errors, which have been occurring step by step manufacturing the physical templates. Conclusions The use of an optical scanner, which has a higher resolution and accuracy than CT scanning, has demonstrated to be a valid support to control the precision of the various physical models adopted and to point out possible error sources. A case study regarding a fully edentulous patient has confirmed the feasibility of the proposed methodology.

  20. Sand transverse dune aerodynamics: 3D Coherent Flow Structures from a computational study

    CERN Document Server

    Bruno, Luca

    2015-01-01

    The engineering interest about dune fields is dictated by the their interaction with a number of human infrastructures in arid environments. The aerodynamic behaviour of sand dunes in atmospheric boundary layer belongs to the class of bluff bodies. Because of their simple geometry and their frequent occurrence in desert area, transverse sand dunes are usually adopted in literature as a benchmark to investigate dune aerodynamics by means of both computational or experimental approach, usually in nominally 2D setups. The writers suspect the flow in the wake is characterised by 3D features and affected by wind tunnel setup - e.g. blockage effect, duct side wall boundary layer, incoming velocity profile - when experimental studies are carried out. The present study aims at evaluating the 3D flow features of an idealised transverse dune under different setup conditions by means of computational simulations and to compare the obtained results with experimental measurements.

  1. Gust Acoustics Computation with a Space-Time CE/SE Parallel 3D Solver

    Science.gov (United States)

    Wang, X. Y.; Himansu, A.; Chang, S. C.; Jorgenson, P. C. E.; Reddy, D. R. (Technical Monitor)

    2002-01-01

    The benchmark Problem 2 in Category 3 of the Third Computational Aero-Acoustics (CAA) Workshop is solved using the space-time conservation element and solution element (CE/SE) method. This problem concerns the unsteady response of an isolated finite-span swept flat-plate airfoil bounded by two parallel walls to an incident gust. The acoustic field generated by the interaction of the gust with the flat-plate airfoil is computed by solving the 3D (three-dimensional) Euler equations in the time domain using a parallel version of a 3D CE/SE solver. The effect of the gust orientation on the far-field directivity is studied. Numerical solutions are presented and compared with analytical solutions, showing a reasonable agreement.

  2. The computer simulation of 3d gas dynamics in a gas centrifuge

    Science.gov (United States)

    Borman, V. D.; Bogovalov, S. V.; Borisevich, V. D.; Tronin, I. V.; Tronin, V. N.

    2016-09-01

    We argue on the basis of the results of 2D analysis of the gas flow in gas centrifuges that a reliable calculation of the circulation of the gas and gas content in the gas centrifuge is possible only in frameworks of 3D numerical simulation of gas dynamics in the gas centrifuge (hereafter GC). The group from National research nuclear university, MEPhI, has created a computer code for 3D simulation of the gas flow in GC. The results of the computer simulations of the gas flows in GC are presented. A model Iguassu centrifuge is explored for the simulations. A nonaxisymmetric gas flow is produced due to interaction of the hypersonic rotating flow with the scoops for extraction of the product and waste flows from the GC. The scoops produce shock waves penetrating into a working camera of the GC and form spiral waves there.

  3. Confocal 3D DNA Cytometry: Assessment of Required Coefficient of Variation by Computer Simulation

    Directory of Open Access Journals (Sweden)

    Lennert S. Ploeger

    2004-01-01

    Full Text Available Background: Confocal Laser Scanning Microscopy (CLSM provides the opportunity to perform 3D DNA content measurements on intact cells in thick histological sections. So far, sample size has been limited by the time consuming nature of the technology. Since the power of DNA histograms to resolve different stemlines depends on both the sample size and the coefficient of variation (CV of histogram peaks, interpretation of 3D CLSM DNA histograms might be hampered by both a small sample size and a large CV. The aim of this study was to analyze the required CV for 3D CLSM DNA histograms given a realistic sample size. Methods: By computer simulation, virtual histograms were composed for sample sizes of 20000, 10000, 5000, 1000, and 273 cells and CVs of 30, 25, 20, 15, 10 and 5%. By visual inspection, the histogram quality with respect to resolution of G0/1 and G2/M peaks of a diploid stemline was assessed. Results: As expected, the interpretability of DNA histograms deteriorated with decreasing sample sizes and higher CVs. For CVs of 15% and lower, a clearly bimodal peak pattern with well distinguishable G0/1 and G2/M peaks were still seen at a sample size of 273 cells, which is our current average sample size with 3D CLSM DNA cytometry. Conclusions: For unambiguous interpretation of DNA histograms obtained using 3D CLSM, a CV of at most 15% is tolerable at currently achievable sample sizes. To resolve smaller near diploid stemlines, a CV of 10% or better should be aimed at. With currently available 3D imaging technology, this CV is achievable.

  4. RF-TSV DESIGN, MODELING AND APPLICATION FOR 3D MULTI-CORE COMPUTER SYSTEMS

    Institute of Scientific and Technical Information of China (English)

    Yu Le; Yang Haigang; Xie Yuanlu

    2012-01-01

    The state-of-the-art multi-core computer systems are based on Very Large Scale three Dimensional (3D) Integrated circuits (VLSI).In order to provide high-speed vertical data transmission in such 3D systems,efficient Through-Silicon Via (TSV) technology is critically important.In this paper,various Radio Frequency (RF) TSV designs and models are proposed.Specifically,the Cu-plug TSV with surrounding ground TSVs is used as the baseline structure.For further improvement,the dielectric coaxial and novel air-gap coaxial TSVs are introduced.Using the empirical parameters of these coaxial TSVs,the simulation results are obtained demonstrating that these coaxial RF-TSVs can provide two-order higher of cut-off frequencies than the Cu-plug TSVs.Based on these new RF-TSV technologies,we propose a novel 3D multi-core computer system as well as new architectures for manipulating the interfaces between RF and baseband circuit.Taking into consideration the scaling down of IC manufacture technologies,predictions for the performance of future generations of circuits are made.With simulation results indicating energy per bit and area per bit being reduced by 7% and 11% respectively,we can conclude that the proposed method is a worthwhile guideline for the design of future multi-core computer ICs.

  5. Hierarchical micro-lamella-structured 3D porous copper current collector coated with tin for advanced lithium-ion batteries

    Science.gov (United States)

    Park, Hyeji; Um, Ji Hyun; Choi, Hyelim; Yoon, Won-Sub; Sung, Yung-Eun; Choe, Heeman

    2017-03-01

    A Novel 3D porous Sn-Cu architecture is prepared as an anode material for use in an advanced lithium-ion battery. Micro-lamellar-structured 3D porous Cu foam, which is electroless-plated with Sn as an active material, is used as anode current collector. Compared to Sn-coated Cu foil, the 3D Sn-Cu foam exhibits superior Li-ion capacity and stable capacity retention, demonstrating the advantage of 3D porous architecture by preserving its structural integrity. In addition, the effect of heat-treatment after Sn plating is investigated. Sn/Sn6Cu5 and SnO2/Cu10Sn3 were formed on and in the 3D Sn-Cu foam under the heat-treatment at 150 °C and 500 °C, respectively. The development of Cu10Sn3 in the 3D Sn-Cu foam heat-treated at 500 °C can be a key factor for the enhanced cyclic stability because the Cu10Sn3 inactively reacts with Li-ion and alleviates the volume expansion of SnO2 as an inactive matrix.

  6. 3D fast adaptive correlation imaging for large-scale gravity data based on GPU computation

    Science.gov (United States)

    Chen, Z.; Meng, X.; Guo, L.; Liu, G.

    2011-12-01

    In recent years, large scale gravity data sets have been collected and employed to enhance gravity problem-solving abilities of tectonics studies in China. Aiming at the large scale data and the requirement of rapid interpretation, previous authors have carried out a lot of work, including the fast gradient module inversion and Euler deconvolution depth inversion ,3-D physical property inversion using stochastic subspaces and equivalent storage, fast inversion using wavelet transforms and a logarithmic barrier method. So it can be say that 3-D gravity inversion has been greatly improved in the last decade. Many authors added many different kinds of priori information and constraints to deal with nonuniqueness using models composed of a large number of contiguous cells of unknown property and obtained good results. However, due to long computation time, instability and other shortcomings, 3-D physical property inversion has not been widely applied to large-scale data yet. In order to achieve 3-D interpretation with high efficiency and precision for geological and ore bodies and obtain their subsurface distribution, there is an urgent need to find a fast and efficient inversion method for large scale gravity data. As an entirely new geophysical inversion method, 3D correlation has a rapid development thanks to the advantage of requiring no a priori information and demanding small amount of computer memory. This method was proposed to image the distribution of equivalent excess masses of anomalous geological bodies with high resolution both longitudinally and transversely. In order to tranform the equivalence excess masses into real density contrasts, we adopt the adaptive correlation imaging for gravity data. After each 3D correlation imaging, we change the equivalence into density contrasts according to the linear relationship, and then carry out forward gravity calculation for each rectangle cells. Next, we compare the forward gravity data with real data, and

  7. 3D animation of facial plastic surgery based on computer graphics

    Science.gov (United States)

    Zhang, Zonghua; Zhao, Yan

    2013-12-01

    More and more people, especial women, are getting desired to be more beautiful than ever. To some extent, it becomes true because the plastic surgery of face was capable in the early 20th and even earlier as doctors just dealing with war injures of face. However, the effect of post-operation is not always satisfying since no animation could be seen by the patients beforehand. In this paper, by combining plastic surgery of face and computer graphics, a novel method of simulated appearance of post-operation will be given to demonstrate the modified face from different viewpoints. The 3D human face data are obtained by using 3D fringe pattern imaging systems and CT imaging systems and then converted into STL (STereo Lithography) file format. STL file is made up of small 3D triangular primitives. The triangular mesh can be reconstructed by using hash function. Top triangular meshes in depth out of numbers of triangles must be picked up by ray-casting technique. Mesh deformation is based on the front triangular mesh in the process of simulation, which deforms interest area instead of control points. Experiments on face model show that the proposed 3D animation facial plastic surgery can effectively demonstrate the simulated appearance of post-operation.

  8. Computer-aided planning and reconstruction of cranial 3D implants.

    Science.gov (United States)

    Gall, Markus; Xing Li; Xiaojun Chen; Schmalstieg, Dieter; Egger, Jan

    2016-08-01

    In this contribution, a prototype for semiautomatic computer-aided planning and reconstruction of cranial 3D Implants is presented. The software prototype guides the user through the workflow, beginning with loading and mirroring the patient's head to obtain an initial curvature of the cranial implant. However, naïve mirroring is not sufficient for an implant, because human heads are in general too asymmetric. Thus, the user can perform Laplacian smoothing, followed by Delaunay triangulation, for generating an aesthetic looking and well-fitting implant. Finally, our software prototype allows to save the designed 3D model of the implant as a STL-file for 3D printing. The 3D printed implant can be used for further pre-interventional planning or even as the final implant for the patient. In summary, our findings show that a customized MeVisLab prototype can be an alternative to complex commercial planning software, which may not be available in a clinic.

  9. A 3D learning playground for potential attention training in ADHD: A brain computer interface approach.

    Science.gov (United States)

    Ali, Abdulla; Puthusserypady, Sadasivan

    2015-01-01

    This paper presents a novel brain-computer-interface (BCI) system that could potentially be used for enhancing the attention ability of subjects with attention deficit hyperactivity disorder (ADHD). It employs the steady state visual evoked potential (SSVEP) paradigm. The developed system consists of a 3D classroom environment with active 3D distractions and 2D games executed on the blackboard. The system is concealed as a game (with stages of varying difficulty) with an underlying story to motivate the subjects. It was tested on eleven healthy subjects and the results undeniably establish that by moving to a higher stage in the game where the 2D environment is changed to 3D along with the added 3D distractions, the difficulty level in keeping attention on the main task increases for the subjects. Results also show a mean accuracy of 92.26 ± 7.97% and a mean average selection time of 3.07 ± 1.09 seconds.

  10. THERM3D -- A boundary element computer program for transient heat conduction problems

    Energy Technology Data Exchange (ETDEWEB)

    Ingber, M.S. [New Mexico Univ., Albuquerque, NM (United States). Dept. of Mechanical Engineering

    1994-02-01

    The computer code THERM3D implements the direct boundary element method (BEM) to solve transient heat conduction problems in arbitrary three-dimensional domains. This particular implementation of the BEM avoids performing time-consuming domain integrations by approximating a ``generalized forcing function`` in the interior of the domain with the use of radial basis functions. An approximate particular solution is then constructed, and the original problem is transformed into a sequence of Laplace problems. The code is capable of handling a large variety of boundary conditions including isothermal, specified flux, convection, radiation, and combined convection and radiation conditions. The computer code is benchmarked by comparisons with analytic and finite element results.

  11. Distributed network, wireless and cloud computing enabled 3-D ultrasound; a new medical technology paradigm.

    Directory of Open Access Journals (Sweden)

    Arie Meir

    Full Text Available Medical technologies are indispensable to modern medicine. However, they have become exceedingly expensive and complex and are not available to the economically disadvantaged majority of the world population in underdeveloped as well as developed parts of the world. For example, according to the World Health Organization about two thirds of the world population does not have access to medical imaging. In this paper we introduce a new medical technology paradigm centered on wireless technology and cloud computing that was designed to overcome the problems of increasing health technology costs. We demonstrate the value of the concept with an example; the design of a wireless, distributed network and central (cloud computing enabled three-dimensional (3-D ultrasound system. Specifically, we demonstrate the feasibility of producing a 3-D high end ultrasound scan at a central computing facility using the raw data acquired at the remote patient site with an inexpensive low end ultrasound transducer designed for 2-D, through a mobile device and wireless connection link between them. Producing high-end 3D ultrasound images with simple low-end transducers reduces the cost of imaging by orders of magnitude. It also removes the requirement of having a highly trained imaging expert at the patient site, since the need for hand-eye coordination and the ability to reconstruct a 3-D mental image from 2-D scans, which is a necessity for high quality ultrasound imaging, is eliminated. This could enable relatively untrained medical workers in developing nations to administer imaging and a more accurate diagnosis, effectively saving the lives of people.

  12. Automatic procedure for realistic 3D finite element modelling of human brain for bioelectromagnetic computations

    Energy Technology Data Exchange (ETDEWEB)

    Aristovich, K Y; Khan, S H, E-mail: kirill.aristovich.1@city.ac.u [School of Engineering and Mathematical Sciences, City University London, Northampton Square, London EC1V 0HB (United Kingdom)

    2010-07-01

    Realistic computer modelling of biological objects requires building of very accurate and realistic computer models based on geometric and material data, type, and accuracy of numerical analyses. This paper presents some of the automatic tools and algorithms that were used to build accurate and realistic 3D finite element (FE) model of whole-brain. These models were used to solve the forward problem in magnetic field tomography (MFT) based on Magnetoencephalography (MEG). The forward problem involves modelling and computation of magnetic fields produced by human brain during cognitive processing. The geometric parameters of the model were obtained from accurate Magnetic Resonance Imaging (MRI) data and the material properties - from those obtained from Diffusion Tensor MRI (DTMRI). The 3D FE models of the brain built using this approach has been shown to be very accurate in terms of both geometric and material properties. The model is stored on the computer in Computer-Aided Parametrical Design (CAD) format. This allows the model to be used in a wide a range of methods of analysis, such as finite element method (FEM), Boundary Element Method (BEM), Monte-Carlo Simulations, etc. The generic model building approach presented here could be used for accurate and realistic modelling of human brain and many other biological objects.

  13. A hybrid method for the computation of quasi-3D seismograms.

    Science.gov (United States)

    Masson, Yder; Romanowicz, Barbara

    2013-04-01

    The development of powerful computer clusters and efficient numerical computation methods, such as the Spectral Element Method (SEM) made possible the computation of seismic wave propagation in a heterogeneous 3D earth. However, the cost of theses computations is still problematic for global scale tomography that requires hundreds of such simulations. Part of the ongoing research effort is dedicated to the development of faster modeling methods based on the spectral element method. Capdeville et al. (2002) proposed to couple SEM simulations with normal modes calculation (C-SEM). Nissen-Meyer et al. (2007) used 2D SEM simulations to compute 3D seismograms in a 1D earth model. Thanks to these developments, and for the first time, Lekic et al. (2011) developed a 3D global model of the upper mantle using SEM simulations. At the local and continental scale, adjoint tomography that is using a lot of SEM simulation can be implemented on current computers (Tape, Liu et al. 2009). Due to their smaller size, these models offer higher resolution. They provide us with images of the crust and the upper part of the mantle. In an attempt to teleport such local adjoint tomographic inversions into the deep earth, we are developing a hybrid method where SEM computation are limited to a region of interest within the earth. That region can have an arbitrary shape and size. Outside this region, the seismic wavefield is extrapolated to obtain synthetic data at the Earth's surface. A key feature of the method is the use of a time reversal mirror to inject the wavefield induced by distant seismic source into the region of interest (Robertsson and Chapman 2000). We compute synthetic seismograms as follow: Inside the region of interest, we are using regional spectral element software RegSEM to compute wave propagation in 3D. Outside this region, the wavefield is extrapolated to the surface by convolution with the Green's functions from the mirror to the seismic stations. For now, these

  14. Self-assembly synthesis of 3D graphene-encapsulated hierarchical Fe3O4 nano-flower architecture with high lithium storage capacity and excellent rate capability

    Science.gov (United States)

    Ma, Yating; Huang, Jian; Lin, Liang; Xie, Qingshui; Yan, Mengyu; Qu, Baihua; Wang, Laisen; Mai, Liqiang; Peng, Dong-Liang

    2017-10-01

    Graphene-encapsulated hierarchical metal oxides architectures can efficiently combine the merits of graphene and hierarchical metal oxides, which are deemed as the potential anode material candidates for the next-generation lithium-ion batteries due to the synergistic effect between them. Herein, a cationic surfactant induced self-assembly method is developed to construct 3D Fe3O4@reduction graphene oxide (H-Fe3O4@RGO) hybrid architecture in which hierarchical Fe3O4 nano-flowers (H-Fe3O4) are intimately encapsulated by 3D graphene network. Each H-Fe3O4 particle is constituted of rod-shaped skeletons surrounded by petal-like nano-flakes that are made up of enormous nanoparticles. When tested as the anode material in lithium-ion batteries, a high reversible capacity of 2270 mA h g-1 after 460 cycles is achieved under a current density of 0.5 A g-1. More impressively, even tested at a large current density of 10 A g-1, a decent reversible capacity of 490 mA h g-1 can be retained, which is still higher than the theoretical capacity of traditional graphite anode, demonstrating the remarkable lithium storage properties. The reasons for the excellent electrochemical performance of H-Fe3O4@RGO electrode have been discussed in detail.

  15. 3D histomorphometric quantification of trabecular bones by computed microtomography using synchrotron radiation.

    Science.gov (United States)

    Nogueira, L P; Braz, D; Barroso, R C; Oliveira, L F; Pinheiro, C J G; Dreossi, D; Tromba, G

    2010-12-01

    Conventional bone histomorphometry is an important method for quantitative evaluation of bone microstructure. X-ray computed microtomography is a non-invasive technique, which can be used to evaluate histomorphometric indices in trabecular bones (BV/TV, BS/BV, Tb.N, Tb.Th, Tb.Sp). In this technique, 3D images are used to quantify the whole sample, differently from the conventional one, in which the quantification is performed in 2D slices and extrapolated for 3D case. In this work, histomorphometric quantification using synchrotron 3D X-ray computed microtomography was performed to quantify the bone structure at different skeletal sites as well as to investigate the effects of bone diseases on quantitative understanding of bone architecture. The images were obtained at Synchrotron Radiation for MEdical Physics (SYRMEP) beamline, at ELETTRA synchrotron radiation facility, Italy. Concerning the obtained results for normal and pathological bones from same skeletal sites and individuals, from our results, a certain declining bone volume fraction was achieved. The results obtained could be used in forming the basis for comparison of the bone microarchitecture and can be a valuable tool for predicting bone fragility.

  16. Impact of 3D Hierarchical Nanostructures on the Antibacterial Efficacy of a Bacteria-Triggered Self-Defensive Antibiotic Coating

    NARCIS (Netherlands)

    Hizal, Ferdi; Zhuk, Iryna; Sukhishvili, Svetlana; Busscher, Henk J.; van der Mei, Henny C.; Choi, Chang-Hwan

    2015-01-01

    Titanium is often applied in implant surgery, but frequently implicated in infections associated with bacterial adhesion and growth on the implant surface. Here, we show that hierarchical nanostructuring of titanium and the subsequent coating of resulting topographical features with a self-defensive

  17. Engineering 3D bicontinuous hierarchically macro-mesoporous LiFePO4/C nanocomposite for lithium storage with high rate capability and long cycle stability

    Science.gov (United States)

    Zhang, Qian; Huang, Shao-Zhuan; Jin, Jun; Liu, Jing; Li, Yu; Wang, Hong-En; Chen, Li-Hua; Wang, Bin-Jie; Su, Bao-Lian

    2016-05-01

    A highly crystalline three dimensional (3D) bicontinuous hierarchically macro-mesoporous LiFePO4/C nanocomposite constructed by nanoparticles in the range of 50~100 nm via a rapid microwave assisted solvothermal process followed by carbon coating have been synthesized as cathode material for high performance lithium-ion batteries. The abundant 3D macropores allow better penetration of electrolyte to promote Li+ diffusion, the mesopores provide more electrochemical reaction sites and the carbon layers outside LiFePO4 nanoparticles increase the electrical conductivity, thus ultimately facilitating reverse reaction of Fe3+ to Fe2+ and alleviating electrode polarization. In addition, the particle size in nanoscale can provide short diffusion lengths for the Li+ intercalation-deintercalation. As a result, the 3D macro-mesoporous nanosized LiFePO4/C electrode exhibits excellent rate capability (129.1 mA h/g at 2 C; 110.9 mA h/g at 10 C) and cycling stability (87.2% capacity retention at 2 C after 1000 cycles, 76.3% at 5 C after 500 cycles and 87.8% at 10 C after 500 cycles, respectively), which are much better than many reported LiFePO4/C structures. Our demonstration here offers the opportunity to develop nanoscaled hierarchically porous LiFePO4/C structures for high performance lithium-ion batteries through microwave assisted solvothermal method.

  18. Computer-assisted three-dimensional surgical planning: 3D virtual articulator: technical note.

    Science.gov (United States)

    Ghanai, S; Marmulla, R; Wiechnik, J; Mühling, J; Kotrikova, B

    2010-01-01

    This study presents a computer-assisted planning system for dysgnathia treatment. It describes the process of information gathering using a virtual articulator and how the splints are constructed for orthognathic surgery. The deviation of the virtually planned splints is shown in six cases on the basis of conventionally planned cases. In all cases the plaster models were prepared and scanned using a 3D laser scanner. Successive lateral and posterior-anterior cephalometric images were used for reconstruction before surgery. By identifying specific points on the X-rays and marking them on the virtual models, it was possible to enhance the 2D images to create a realistic 3D environment and to perform virtual repositioning of the jaw. A hexapod was used to transfer the virtual planning to the real splints. Preliminary results showed that conventional repositioning could be replicated using the virtual articulator.

  19. Computation of Edge-Edge-Edge Events Based on Conicoid Theory for 3-D Object Recognition

    Institute of Scientific and Technical Information of China (English)

    WU Chenye; MA Huimin

    2009-01-01

    The availability of a good viewpoint space partition is crucial in three dimensional (3-D) object rec-ognition on the approach of aspect graph. There are two important events depicted by the aspect graph ap-proach, edge-edge-edge (EEE) events and edge-vertex (EV) events. This paper presents an algorithm to compute EEE events by characteristic analysis based on conicoid theory, in contrast to current algorithms that focus too much on EV events and often overlook the importance of EEE events. Also, the paper provides a standard flowchart for the viewpoint space partitioning based on aspect graph theory that makes it suitable for perspective models. The partitioning result best demonstrates the algorithm's efficiency with more valu-able viewpoints found with the help of EEE events, which can definitely help to achieve high recognition rate for 3-D object recognition.

  20. The current status of the development of the technology on 3D computer simulation in Japan

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Hee Reyoung; Park, Seung Kook; Chung, Un Soo; Jung, Ki Jung

    2002-05-01

    The development background and property of the COSIDA, which is the 3D computer simulation system for the analysis on the dismantling procedure of the nuclear facilities in Japan was reviewed. The function of the visualization on the work area, Kinematics analysis and dismantling scenario analysis, which are the sub systems of the COSIDA, has been investigated. The physical, geometrical and radiological properties were modelled in 2D or 3D in the sub system of the visualization of the work area. In the sub system of the kinematics analysis, the command set on the basic work procedure for the control of the motion of the models at a cyber space was driven. The suitability of the command set was estimated by the application of COSIDA to the programming on the motion of the remote dismantling tools for dismantling the components of the nuclear facilities at cyber space.

  1. Parallel Adaptive Computation of Blood Flow in a 3D ``Whole'' Body Model

    Science.gov (United States)

    Zhou, M.; Figueroa, C. A.; Taylor, C. A.; Sahni, O.; Jansen, K. E.

    2008-11-01

    Accurate numerical simulations of vascular trauma require the consideration of a larger portion of the vasculature than previously considered, due to the systemic nature of the human body's response. A patient-specific 3D model composed of 78 connected arterial branches extending from the neck to the lower legs is constructed to effectively represent the entire body. Recently developed outflow boundary conditions that appropriately represent the downstream vasculature bed which is not included in the 3D computational domain are applied at 78 outlets. In this work, the pulsatile blood flow simulations are started on a fairly uniform, unstructured mesh that is subsequently adapted using a solution-based approach to efficiently resolve the flow features. The adapted mesh contains non-uniform, anisotropic elements resulting in resolution that conforms with the physical length scales present in the problem. The effects of the mesh resolution on the flow field are studied, specifically on relevant quantities of pressure, velocity and wall shear stress.

  2. Computational fluid dynamics simulations of blood flow regularized by 3D phase contrast MRI

    DEFF Research Database (Denmark)

    Rispoli, Vinicius C; Nielsen, Jon; Nayak, Krishna S

    2015-01-01

    approach in regularizing 3D flow fields is evaluated. METHODS: The proposed algorithm incorporates both a Newtonian fluid physics model and a linear PC-MRI signal model. The model equations are solved numerically using a modified CFD algorithm. The numerical solution corresponds to the optimal solution......BACKGROUND: Phase contrast magnetic resonance imaging (PC-MRI) is used clinically for quantitative assessment of cardiovascular flow and function, as it is capable of providing directly-measured 3D velocity maps. Alternatively, vascular flow can be estimated from model-based computation fluid...... dynamics (CFD) calculations. CFD provides arbitrarily high resolution, but its accuracy hinges on model assumptions, while velocity fields measured with PC-MRI generally do not satisfy the equations of fluid dynamics, provide limited resolution, and suffer from partial volume effects. The purpose...

  3. Reproducibly creating hierarchical 3D carbon to study the effect of Si surface functionalization on the oxygen reduction reaction

    Science.gov (United States)

    Zeng, Yuze; Flores, Jose F.; Shao, Yu-Cheng; Guo, Jinghua; Chuang, Yi-De; Lu, Jennifer Q.

    2016-06-01

    We report a new method to reproducibly fabricate functional 3D carbon structures directly on a current collector, e.g. stainless steel. The 3D carbon platform is formed by direct growth of upright arrays of carbon nanofiber bundles on a roughened surface of stainless steel via the seed-assisted approach. Each bundle consists of about 30 individual carbon nanofibers with a diameter of 18 nm on average. We have found that this new platform offers adequate structural integrity. As a result, no reduction of the surface area during downstream chemical functionalization was observed. With a fixed and reproducible 3D structure, the effect of the chemistry of the grafted species on the oxygen reduction reaction has been systematically investigated. This investigation reveals for the first time that non-conductive Si with an appropriate electronic structure distorts the carbon electronic structure and consequently enhances ORR electrocatalysis. The strong interface provides excellent electron connectivity according to electrochemical analysis. This highly reproducible and stable 3D platform can serve as a stepping-stone for the investigation of the effect of carbon surface functionalization on electrochemical reactions in general.We report a new method to reproducibly fabricate functional 3D carbon structures directly on a current collector, e.g. stainless steel. The 3D carbon platform is formed by direct growth of upright arrays of carbon nanofiber bundles on a roughened surface of stainless steel via the seed-assisted approach. Each bundle consists of about 30 individual carbon nanofibers with a diameter of 18 nm on average. We have found that this new platform offers adequate structural integrity. As a result, no reduction of the surface area during downstream chemical functionalization was observed. With a fixed and reproducible 3D structure, the effect of the chemistry of the grafted species on the oxygen reduction reaction has been systematically investigated. This

  4. Using 2D and 3D Computer Games to Detect Colorblindness – a Comparative Study

    Directory of Open Access Journals (Sweden)

    Laskowski Maciej

    2015-12-01

    Full Text Available Computer games have accompanied the development of computer technologies since the very beginning. Despite their basic, purely entertainment-targeted appliance, games can also be used for many other purposes. Medical applications are especially interesting, as games (especially different kinds of simulations are widely used for training personnel, e.g. to perform certain procedures or in learning to use equipment. This allows the trainees to gain knowledge and proper habits, as well as test themselves in different situations without any risk. Computer games can also be used as a diagnostic tool, although this topic is still insufficiently researched. This paper discusses the possibility of using serious games for diagnosing color vision disorders, focusing especially on two problems: differences in diagnosing colorblindness using 2D and 3D environments, and the influence of individual features, such as reflex or agility, on the diagnostic process.

  5. Reconstruction of 3D medical image by computer graphics. Presentation of inner structure with animation graphics

    Energy Technology Data Exchange (ETDEWEB)

    Tsuruno, Reiji; Matsui, Nobuyuki; Bamba, Eiichi

    1988-09-01

    Recently there are a lot of reports of 3-Dimensional Medical Imaging from CT (Computed Tomography) using Computer Graphics technology. By the way, the greater part of them use Semi-Transparent or cutout-display algorhythm to display 3D images of objects is human body. But these algorhythm can not display figure so clearly that operater can recognize location of target and around organisms at same time. But it is necessary in medical use computer graphics. This paper reports an animation-method in order to display cerebral tumor in human brain. This animation plays a set of multiplex cutout-display frames. The cutout-display exceeds to present inside data only on cutout plain. So, many cutout-display images can present many inside data. Animation is one of effective method to display a lot of frames. And automatic or manual-operation playback of animation made it to be able to present inner structure effectively.

  6. Computational Analysis of the Transonic Dynamics Tunnel Using FUN3D

    Energy Technology Data Exchange (ETDEWEB)

    Chwalowski, Pawel; Quon, Eliot; Brynildsen, Scott E.

    2016-01-04

    This paper presents results from an explanatory two-year effort of applying Computational Fluid Dynamics (CFD) to analyze the empty-tunnel flow in the NASA Langley Research Center Transonic Dynamics Tunnel (TDT). The TDT is a continuous-flow, closed circuit, 16- x 16-foot slotted-test-section wind tunnel, with capabilities to use air or heavy gas as a working fluid. In this study, experimental data acquired in the empty tunnel using the R-134a test medium was used to calibrate the computational data. The experimental calibration data includes wall pressures, boundary-layer profiles, and the tunnel centerline Mach number profiles. Subsonic and supersonic flow regimes were considered, focusing on Mach 0.5, 0.7 and Mach 1.1 in the TDT test section. This study discusses the computational domain, boundary conditions, and initial conditions selected in the resulting steady-state analyses using NASA's FUN3D CFD software.

  7. 3-D electromagnetic plasma particle simulations on the Intel Delta parallel computer

    Energy Technology Data Exchange (ETDEWEB)

    Wang, J.; Liewer, P.C. [California Inst. of Tech., Pasadena, CA (United States). Jet Propulsion Lab.; Decyk, V.K. [Univ. of California, Los Angeles, CA (United States)

    1994-12-31

    A three-dimensional electromagnetic PIC code has been developed on the 512 node Intel Touchstone Delta MIMD parallel computer. This code is based on the General Concurrent PIC algorithm which uses a domain decomposition to divide the computation among the processors. The 3D simulation domain can be partitioned into 1-, 2-, or 3-dimensional sub-domains. Particles must be exchanged between processors as they move among the subdomains. The Intel Delta allows one to use this code for very-large-scale simulations (i.e. over 10{sup 8} particles and 10{sup 6} grid cells). The parallel efficiency of this code is measured, and the overall code performance on the Delta is compared with that on Cray supercomputers. It is shown that their code runs with a high parallel efficiency of {ge} 95% for large size problems. The particle push time achieved is 115 nsecs/particle/time step for 162 million particles on 512 nodes. Comparing with the performance on a single processor Cray C90, this represents a factor of 58 speedup. The code uses a finite-difference leap frog method for field solve which is significantly more efficient than fast fourier transforms on parallel computers. The performance of this code on the 128 node Cray T3D will also be discussed.

  8. Generic camera model and its calibration for computational integral imaging and 3D reconstruction.

    Science.gov (United States)

    Li, Weiming; Li, Youfu

    2011-03-01

    Integral imaging (II) is an important 3D imaging technology. To reconstruct 3D information of the viewed objects, modeling and calibrating the optical pickup process of II are necessary. This work focuses on the modeling and calibration of an II system consisting of a lenslet array, an imaging lens, and a charge-coupled device camera. Most existing work on such systems assumes a pinhole array model (PAM). In this work, we explore a generic camera model that accommodates more generality. This model is an empirical model based on measurements, and we constructed a setup for its calibration. Experimental results show a significant difference between the generic camera model and the PAM. Images of planar patterns and 3D objects were computationally reconstructed with the generic camera model. Compared with the images reconstructed using the PAM, the images present higher fidelity and preserve more high spatial frequency components. To the best of our knowledge, this is the first attempt in applying a generic camera model to an II system.

  9. New solutions for industrial inspection based on 3D computer tomography

    Science.gov (United States)

    Kroll, Julia; Effenberger, Ira; Verl, Alexander

    2008-04-01

    In recent years the requirements of industrial applications relating to image processing have significantly increased. According to fast and modern production processes and optimized manufacturing of high quality products, new ways of image acquisition and analysis are needed. Here the industrial computer tomography (CT) as a non-destructive technology for 3D data generation meets this challenge by offering the possibility of complete inspection of complex industrial parts with all outer and inner geometric features. Consequently CT technology is well suited for different kinds of industrial image-based applications in the field of quality assurance like material testing or first article inspection. Moreover surface reconstruction and reverse engineering applications will benefit from CT. In this paper our new methods for efficient 3D CT-image processing are presented. This includes improved solutions for 3D surface reconstruction, innovative approaches of CAD-based segmentation in the CT volume data and the automatic geometric feature detection in complex parts. However the aspect of accuracy is essential in the field of metrology. In order to enhance precision the CT sensor can be combined with other, more accurate sensor systems generating measure points for CT data correction. All algorithms are applied to real data sets in order to demonstrate our tools.

  10. Facile and one-pot solution synthesis of several kinds of 3D hierarchical flower-like α-Bi2O3 microspheres

    Science.gov (United States)

    Wang, Yajun; Li, Zexue; Yu, Haiyang; Feng, Changgen

    2016-09-01

    Several kinds of three-dimensional (3D) hierarchical constructed flower-like α-Bi2O3 microspheres were prepared successfully via a simple solution precipitation synthesis at 95∘C and ambient atmospheric pressure in 1h. The synthesis process was operated in ethanol-water system as solvent with the assistance of glycerin and oleic acid as capping agents. These flower-like α-Bi2O3 architectures with diameter of several micrometers were 3D self-assembled from nanorods or nanocubes step by step. By adjusting the concentration of the capping agents, various flower-like α-Bi2O3 microspheres were obtained. The formation of the flower-like superstructures was attributed to the modification of nucleation and growth kinetics, and the guidance of self-assembly approach by capping agents. The formation mechanism of these microstructures was discussed briefly.

  11. A 3D edge detection technique for surface extraction in computed tomography for dimensional metrology applications

    DEFF Research Database (Denmark)

    Yagüe-Fabra, J.A.; Ontiveros, S.; Jiménez, R.

    2013-01-01

    Many factors influence the measurement uncertainty when using computed tomography for dimensional metrology applications. One of the most critical steps is the surface extraction phase. An incorrect determination of the surface may significantly increase the measurement uncertainty. This paper...... presents an edge detection method for the surface extraction based on a 3D Canny algorithm with sub-voxel resolution. The advantages of this method are shown in comparison with the most commonly used technique nowadays, i.e. the local threshold definition. Both methods are applied to reference standards...

  12. Computing 3-D steady supersonic flow via a new Lagrangian approach

    Science.gov (United States)

    Loh, C. Y.; Liou, M.-S.

    1993-01-01

    The new Lagrangian method introduced by Loh and Hui (1990) is extended for 3-D steady supersonic flow computation. Details of the conservation form, the implementation of the local Riemann solver, and the Godunov and the high resolution TVD schemes are presented. The new approach is robust yet accurate, capable of handling complicated geometry and reactions between discontinuous waves. It keeps all the advantages claimed in the 2-D method of Loh and Hui, e.g., crisp resolution for a slip surface (contact discontinuity) and automatic grid generation along the stream.

  13. 3D Bi{sub 12}TiO{sub 20}/TiO{sub 2} hierarchical heterostructure: Synthesis and enhanced visible-light photocatalytic activities

    Energy Technology Data Exchange (ETDEWEB)

    Hou, Jungang, E-mail: lorinhjg@yahoo.com.cn [School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083 (China); Wang, Zheng [School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083 (China); Jiao, Shuqiang, E-mail: sjiao@ustb.edu.cn [School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083 (China); Zhu, Hongmin [School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083 (China)

    2011-09-15

    Graphical abstract: 3D Bi{sub 12}TiO{sub 20}/TiO{sub 2} hierarchical heterostructures were prepared through a facile template-free hydrothermal process and their visible-light photocatalytic properties were investigated. Highlights: {yields} 3D Bi{sub 12}TiO{sub 20}/TiO{sub 2} heterostructures were prepared through a hydrothermal process. {yields} The heterostructures exhibited high photocatalytic activity over RhB decomposition. {yields} The photocatalytic mechanism of the heterostructures was proposed. {yields} The superior performance originates in hindering the recombination of e{sup +}-h{sup -} pairs. - Abstract: A three-dimensional (3D) multicomponent oxide, Bi{sub 12}TiO{sub 20}/TiO{sub 2} hierarchical heterostructure was successfully synthesized via a one-step and template-free hydrothermal route. X-ray diffraction and X-ray photoelectron spectroscopy measurements confirm that the composition of the as-fabricated sample is Bi{sub 12}TiO{sub 20}/TiO{sub 2} composite. Scanning and transmission electron microscopy observation reveals that the as-synthesized sample is microsized flower-like hierarchical networks consisted of Bi{sub 12}TiO{sub 20} nanorods decorated with the primary TiO{sub 2} nanoparticles. Extension of the light absorption from the ultraviolet region to the visible-light region was confirmed by UV-vis absorption spectra. Due to the structure-property relationships, the 3D Bi{sub 12}TiO{sub 20}/TiO{sub 2} heterostructure exhibited enhanced visible photocatalytic activity over that of Bi{sub 12}TiO{sub 20} and TiO{sub 2} samples in the decomposition of Rhodamine B in water which is a typical model pollutant. The enhanced photocatalytic activity can be attributed to the extended absorption in the visible light region resulting from the 3D Bi{sub 12}TiO{sub 20}/TiO{sub 2} heterostructures, and the effective separation of photogenerated carriers driven by the photoinduced potential difference generated at the Bi{sub 12}TiO{sub 20}/TiO{sub 2

  14. Computer Simulation of Robotic Device Components in 3D Printer Manufacturing

    Directory of Open Access Journals (Sweden)

    M. A. Kiselev

    2016-01-01

    Full Text Available The paper considers a relevant problem "Computer simulation of robotic device components in manufacturing on a 3D printer" and highlights the problem of computer simulation based on the cognitive programming technology of robotic device components. The paper subject is urgent because computer simulation of force-torque and accuracy characteristics of robot components in terms of their manufacturing properties and conditions from polymeric and metallic materials is of paramount importance for programming and manufacturing on the 3D printers. Two types of additive manufacturing technologies were used:1. FDM (Fused deposition modeling - layered growth of products from molten plastic strands;2. SLM (Selective laser melting - selective laser sintering of metal powders, which, in turn, create:• conditions for reducing the use of expensive equipment;• reducing weight and increasing strength through optimization of  the lattice structures when using a bionic design;• a capability to implement mathematical modeling of individual components of robotic and other devices in terms of appropriate characteristics;• a 3D printing capability to create unique items, which cannot be made by other known methods.The paper aim was to confirm the possibility of ensuring the strength and accuracy characteristics of cases when printing from polymeric and metallic materials on a 3D printer. The investigation emphasis is on mathematical modeling based on the cognitive programming technology using the additive technologies in their studies since it is, generally, impossible to make the obtained optimized structures on the modern CNC machines.The latter allows us to create a program code to be clear to other developers without cost, additional time for development, adaptation and implementation.Year by year Russian companies increasingly use a 3D-print system in mechanical engineering, aerospace industry, and for scientific purposes. Machines for the additive

  15. The history of visual magic in computers how beautiful images are made in CAD, 3D, VR and AR

    CERN Document Server

    Peddie, Jon

    2013-01-01

    If you have ever looked at a fantastic adventure or science fiction movie, or an amazingly complex and rich computer game, or a TV commercial where cars or gas pumps or biscuits behaved liked people and wondered, ""How do they do that?"",  then you've experienced the magic of 3D worlds generated by a computer.3D in computers began as a way to represent automotive designs and illustrate the construction of molecules. 3D graphics use evolved to visualizations of simulated data and artistic representations of imaginary worlds. In order to overcome the processing limitations of the computer, graph

  16. A Microfluidic DNA Sensor Based on Three-Dimensional (3D Hierarchical MoS2/Carbon Nanotube Nanocomposites

    Directory of Open Access Journals (Sweden)

    Dahou Yang

    2016-11-01

    Full Text Available In this work, we present a novel microfluidic biosensor for sensitive fluorescence detection of DNA based on 3D architectural MoS2/multi-walled carbon nanotube (MWCNT nanocomposites. The proposed platform exhibits a high sensitivity, selectivity, and stability with a visible manner and operation simplicity. The excellent fluorescence quenching stability of a MoS2/MWCNT aqueous solution coupled with microfluidics will greatly simplify experimental steps and reduce time for large-scale DNA detection.

  17. Hierarchical Fabrication of Engineered Vascularized Bone Biphasic Constructs via Dual 3D Bioprinting: Integrating Regional Bioactive Factors into Architectural Design.

    Science.gov (United States)

    Cui, Haitao; Zhu, Wei; Nowicki, Margaret; Zhou, Xuan; Khademhosseini, Ali; Zhang, Lijie Grace

    2016-09-01

    A biphasic artificial vascularized bone construct with regional bioactive factors is presented using dual 3D bioprinting platform technique, thereby forming a large functional bone grafts with organized vascular networks. Biocompatible mussel-inspired chemistry and "thiol-ene" click reaction are used to regionally immobilize bioactive factors during construct fabrication for modulating or improving cellular events. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. An approximate 3D computational method for real-time computation of induction logging responses

    NARCIS (Netherlands)

    Bensdorp, S.; Petersen, S.A.; Van den Berg, P.M.; Fokkema, J.T.

    2014-01-01

    Over many years, induction logging systems have been used to create well formation logs. The major drawback for the utilization of these tools is the long simulation time for a single forward computation. We proposed an efficient computational method based on a contrast-type of integral-equation for

  19. 3D virtual human atria: A computational platform for studying clinical atrial fibrillation.

    Science.gov (United States)

    Aslanidi, Oleg V; Colman, Michael A; Stott, Jonathan; Dobrzynski, Halina; Boyett, Mark R; Holden, Arun V; Zhang, Henggui

    2011-10-01

    Despite a vast amount of experimental and clinical data on the underlying ionic, cellular and tissue substrates, the mechanisms of common atrial arrhythmias (such as atrial fibrillation, AF) arising from the functional interactions at the whole atria level remain unclear. Computational modelling provides a quantitative framework for integrating such multi-scale data and understanding the arrhythmogenic behaviour that emerges from the collective spatio-temporal dynamics in all parts of the heart. In this study, we have developed a multi-scale hierarchy of biophysically detailed computational models for the human atria--the 3D virtual human atria. Primarily, diffusion tensor MRI reconstruction of the tissue geometry and fibre orientation in the human sinoatrial node (SAN) and surrounding atrial muscle was integrated into the 3D model of the whole atria dissected from the Visible Human dataset. The anatomical models were combined with the heterogeneous atrial action potential (AP) models, and used to simulate the AP conduction in the human atria under various conditions: SAN pacemaking and atrial activation in the normal rhythm, break-down of regular AP wave-fronts during rapid atrial pacing, and the genesis of multiple re-entrant wavelets characteristic of AF. Contributions of different properties of the tissue to mechanisms of the normal rhythm and arrhythmogenesis were investigated. Primarily, the simulations showed that tissue heterogeneity caused the break-down of the normal AP wave-fronts at rapid pacing rates, which initiated a pair of re-entrant spiral waves; and tissue anisotropy resulted in a further break-down of the spiral waves into multiple meandering wavelets characteristic of AF. The 3D virtual atria model itself was incorporated into the torso model to simulate the body surface ECG patterns in the normal and arrhythmic conditions. Therefore, a state-of-the-art computational platform has been developed, which can be used for studying multi

  20. 3D modeling method for computer animate based on modified weak structured light method

    Science.gov (United States)

    Xiong, Hanwei; Pan, Ming; Zhang, Xiangwei

    2010-11-01

    A simple and affordable 3D scanner is designed in this paper. Three-dimensional digital models are playing an increasingly important role in many fields, such as computer animate, industrial design, artistic design and heritage conservation. For many complex shapes, optical measurement systems are indispensable to acquiring the 3D information. In the field of computer animate, such an optical measurement device is too expensive to be widely adopted, and on the other hand, the precision is not as critical a factor in that situation. In this paper, a new cheap 3D measurement system is implemented based on modified weak structured light, using only a video camera, a light source and a straight stick rotating on a fixed axis. For an ordinary weak structured light configuration, one or two reference planes are required, and the shadows on these planes must be tracked in the scanning process, which destroy the convenience of this method. In the modified system, reference planes are unnecessary, and size range of the scanned objects is expanded widely. A new calibration procedure is also realized for the proposed method, and points cloud is obtained by analyzing the shadow strips on the object. A two-stage ICP algorithm is used to merge the points cloud from different viewpoints to get a full description of the object, and after a series of operations, a NURBS surface model is generated in the end. A complex toy bear is used to verify the efficiency of the method, and errors range from 0.7783mm to 1.4326mm comparing with the ground truth measurement.

  1. Quick, Accurate, Smart: 3D Computer Vision Technology Helps Assessing Confined Animals' Behaviour.

    Directory of Open Access Journals (Sweden)

    Shanis Barnard

    Full Text Available Mankind directly controls the environment and lifestyles of several domestic species for purposes ranging from production and research to conservation and companionship. These environments and lifestyles may not offer these animals the best quality of life. Behaviour is a direct reflection of how the animal is coping with its environment. Behavioural indicators are thus among the preferred parameters to assess welfare. However, behavioural recording (usually from video can be very time consuming and the accuracy and reliability of the output rely on the experience and background of the observers. The outburst of new video technology and computer image processing gives the basis for promising solutions. In this pilot study, we present a new prototype software able to automatically infer the behaviour of dogs housed in kennels from 3D visual data and through structured machine learning frameworks. Depth information acquired through 3D features, body part detection and training are the key elements that allow the machine to recognise postures, trajectories inside the kennel and patterns of movement that can be later labelled at convenience. The main innovation of the software is its ability to automatically cluster frequently observed temporal patterns of movement without any pre-set ethogram. Conversely, when common patterns are defined through training, a deviation from normal behaviour in time or between individuals could be assessed. The software accuracy in correctly detecting the dogs' behaviour was checked through a validation process. An automatic behaviour recognition system, independent from human subjectivity, could add scientific knowledge on animals' quality of life in confinement as well as saving time and resources. This 3D framework was designed to be invariant to the dog's shape and size and could be extended to farm, laboratory and zoo quadrupeds in artificial housing. The computer vision technique applied to this software is

  2. Quick, Accurate, Smart: 3D Computer Vision Technology Helps Assessing Confined Animals' Behaviour.

    Science.gov (United States)

    Barnard, Shanis; Calderara, Simone; Pistocchi, Simone; Cucchiara, Rita; Podaliri-Vulpiani, Michele; Messori, Stefano; Ferri, Nicola

    2016-01-01

    Mankind directly controls the environment and lifestyles of several domestic species for purposes ranging from production and research to conservation and companionship. These environments and lifestyles may not offer these animals the best quality of life. Behaviour is a direct reflection of how the animal is coping with its environment. Behavioural indicators are thus among the preferred parameters to assess welfare. However, behavioural recording (usually from video) can be very time consuming and the accuracy and reliability of the output rely on the experience and background of the observers. The outburst of new video technology and computer image processing gives the basis for promising solutions. In this pilot study, we present a new prototype software able to automatically infer the behaviour of dogs housed in kennels from 3D visual data and through structured machine learning frameworks. Depth information acquired through 3D features, body part detection and training are the key elements that allow the machine to recognise postures, trajectories inside the kennel and patterns of movement that can be later labelled at convenience. The main innovation of the software is its ability to automatically cluster frequently observed temporal patterns of movement without any pre-set ethogram. Conversely, when common patterns are defined through training, a deviation from normal behaviour in time or between individuals could be assessed. The software accuracy in correctly detecting the dogs' behaviour was checked through a validation process. An automatic behaviour recognition system, independent from human subjectivity, could add scientific knowledge on animals' quality of life in confinement as well as saving time and resources. This 3D framework was designed to be invariant to the dog's shape and size and could be extended to farm, laboratory and zoo quadrupeds in artificial housing. The computer vision technique applied to this software is innovative in non

  3. Quick, Accurate, Smart: 3D Computer Vision Technology Helps Assessing Confined Animals’ Behaviour

    Science.gov (United States)

    Calderara, Simone; Pistocchi, Simone; Cucchiara, Rita; Podaliri-Vulpiani, Michele; Messori, Stefano; Ferri, Nicola

    2016-01-01

    Mankind directly controls the environment and lifestyles of several domestic species for purposes ranging from production and research to conservation and companionship. These environments and lifestyles may not offer these animals the best quality of life. Behaviour is a direct reflection of how the animal is coping with its environment. Behavioural indicators are thus among the preferred parameters to assess welfare. However, behavioural recording (usually from video) can be very time consuming and the accuracy and reliability of the output rely on the experience and background of the observers. The outburst of new video technology and computer image processing gives the basis for promising solutions. In this pilot study, we present a new prototype software able to automatically infer the behaviour of dogs housed in kennels from 3D visual data and through structured machine learning frameworks. Depth information acquired through 3D features, body part detection and training are the key elements that allow the machine to recognise postures, trajectories inside the kennel and patterns of movement that can be later labelled at convenience. The main innovation of the software is its ability to automatically cluster frequently observed temporal patterns of movement without any pre-set ethogram. Conversely, when common patterns are defined through training, a deviation from normal behaviour in time or between individuals could be assessed. The software accuracy in correctly detecting the dogs’ behaviour was checked through a validation process. An automatic behaviour recognition system, independent from human subjectivity, could add scientific knowledge on animals’ quality of life in confinement as well as saving time and resources. This 3D framework was designed to be invariant to the dog’s shape and size and could be extended to farm, laboratory and zoo quadrupeds in artificial housing. The computer vision technique applied to this software is innovative in non

  4. Clinical usefulness of facial soft tissues thickness measurement using 3D computed tomographic images

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Ho Gul; Kim, Kee Deog; Hu, Kyung Seok; Lee, Jae Bum; Park, Hyok [Maxtron Inc., Seoul (Korea, Republic of); Han, Seung Ho [Catholic Univ. of Korea, Seoul (Korea, Republic of); Choi, Seong Ho; Kim, Chong Kwan; Park, Chang Seo [Yonsei Univ., Seoul (Korea, Republic of)

    2006-06-15

    To evaluate clinical usefulness of facial soft tissue thickness measurement using 3D computed tomographic images. One cadaver that had sound facial soft tissues was chosen for the study. The cadaver was scanned with a Helical CT under following scanning protocols about slice thickness and table speed: 3 mm and 3 mm/sec, 5 mm and 5 mm/sec, 7 mm and 7 mm/sec. The acquired data were reconstructed 1.5, 2.5, 3.5 mm reconstruction interval respectively and the images were transferred to a personal computer. Using a program developed to measure facial soft tissue thickness in 3D image, the facial soft tissue thickness was measured. After the ten-time repeation of the measurement for ten times, repeated measure analysis of variance (ANOVA) was adopted to compare and analyze the measurements using the three scanning protocols. Comparison according to the areas was analysed by Mann-Whitney test. There were no statistically significant intraobserver differences in the measurements of the facial soft tissue thickness using the three scanning protocols (p>0.05). There were no statistically significant differences between measurements in the 3 mm slice thickness and those in the 5 mm, 7 mm slice thickness (p>0.05). There were statistical differences in the 14 of the total 30 measured points in the 5 mm slice thickness and 22 in the 7 mm slice thickness. The facial soft tissue thickness measurement using 3D images of 7 mm slice thickness is acceptable clinically, but those of 5 mm slice thickness is recommended for the more accurate measurement.

  5. Compute extremely low-frequency electromagnetic field exposure by 3-D impendance method

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A 3-D impedance method has been introduced to compute the electric currents induced in a human body exposed to extremely low-frequency electromagnetic field.The 3-D impedance method has been deduced from Maxwell equations and is put into the computation and simulation effectively to the visible human body model, which has 196×114×626 cells and more than 40 types of tissues.As the result, two representative cases are investigated.One is exposure of the human body to 100 μT (1 000 mG), the limit recommended by the International Commission on Non-Ionizing Radiation Protection for the public and the other one is the exposure of human body to 0.4 μT (4 mG), the level at which a statistical link appears with a doubled risk of development of childhood leukaemia.The distribution of induced current density can be obtained and the maximum of induced current are found to be 16 mA/m2 and 0.07 mA/m2.

  6. 3D-Ultrasound probe calibration for computer-guided diagnosis and therapy

    CERN Document Server

    Baumann, Michael; Leroy, Antoine; Troccaz, Jocelyne

    2008-01-01

    With the emergence of swept-volume ultrasound (US) probes, precise and almost real-time US volume imaging has become available. This offers many new opportunities for computer guided diagnosis and therapy, 3-D images containing significantly more information than 2-D slices. However, computer guidance often requires knowledge about the exact position of US voxels relative to a tracking reference, which can only be achieved through probe calibration. In this paper we present a 3-D US probe calibration system based on a membrane phantom. The calibration matrix is retrieved by detection of a membrane plane in a dozen of US acquisitions of the phantom. Plane detection is robustly performed with the 2-D Hough transformation. The feature extraction process is fully automated, calibration requires about 20 minutes and the calibration system can be used in a clinical context. The precision of the system was evaluated to a root mean square (RMS) distance error of 1.15mm and to an RMS angular error of 0.61 degrees. The...

  7. FaceWarehouse: a 3D facial expression database for visual computing.

    Science.gov (United States)

    Cao, Chen; Weng, Yanlin; Zhou, Shun; Tong, Yiying; Zhou, Kun

    2014-03-01

    We present FaceWarehouse, a database of 3D facial expressions for visual computing applications. We use Kinect, an off-the-shelf RGBD camera, to capture 150 individuals aged 7-80 from various ethnic backgrounds. For each person, we captured the RGBD data of her different expressions, including the neutral expression and 19 other expressions such as mouth-opening, smile, kiss, etc. For every RGBD raw data record, a set of facial feature points on the color image such as eye corners, mouth contour, and the nose tip are automatically localized, and manually adjusted if better accuracy is required. We then deform a template facial mesh to fit the depth data as closely as possible while matching the feature points on the color image to their corresponding points on the mesh. Starting from these fitted face meshes, we construct a set of individual-specific expression blendshapes for each person. These meshes with consistent topology are assembled as a rank-3 tensor to build a bilinear face model with two attributes: identity and expression. Compared with previous 3D facial databases, for every person in our database, there is a much richer matching collection of expressions, enabling depiction of most human facial actions. We demonstrate the potential of FaceWarehouse for visual computing with four applications: facial image manipulation, face component transfer, real-time performance-based facial image animation, and facial animation retargeting from video to image.

  8. A review of automated image understanding within 3D baggage computed tomography security screening.

    Science.gov (United States)

    Mouton, Andre; Breckon, Toby P

    2015-01-01

    Baggage inspection is the principal safeguard against the transportation of prohibited and potentially dangerous materials at airport security checkpoints. Although traditionally performed by 2D X-ray based scanning, increasingly stringent security regulations have led to a growing demand for more advanced imaging technologies. The role of X-ray Computed Tomography is thus rapidly expanding beyond the traditional materials-based detection of explosives. The development of computer vision and image processing techniques for the automated understanding of 3D baggage-CT imagery is however, complicated by poor image resolutions, image clutter and high levels of noise and artefacts. We discuss the recent and most pertinent advancements and identify topics for future research within the challenging domain of automated image understanding for baggage security screening CT.

  9. Computational Approach to 3D Modeling of the Lymph Node Geometry

    Directory of Open Access Journals (Sweden)

    Alexey Kislitsyn

    2015-05-01

    Full Text Available In this study we present a computational approach to the generation of the major geometric structures of an idealized murine lymph node (LN. In this generation, we consider the major compartments such as the subcapsular sinus, B cell follicles, trabecular and medullar sinuses, blood vessels and the T cell zone with a primary focus on the fibroblastic reticular cell (FRC network. Confocal microscopy data of LN macroscopic structures and structural properties of the FRC network have been generated and utilized in the present model. The methodology sets a library of modules that can be used to assemble a solid geometric LN model and subsequently generate an adaptive mesh model capable of implementing transport phenomena. Overall, based on the use of high-resolution confocal microscopy and morphological analysis of cell 3D reconstructions, we have developed a computational model of the LN geometry, suitable for further investigation in studies of fluid transport and cell migration in this immunologically essential organ.

  10. Fast computation of scattering from 3D complex structures by MLFMA

    Institute of Scientific and Technical Information of China (English)

    Hu Jun; Nie Zaiping; Que Xiaofeng; Meng Min

    2008-01-01

    This paper introduces the research work on the extension of multilevel fast multipole algorithm (MLFMA) to 3D complex structures including coating object,thin dielectric sheet,composite dielectric and conductor,cavity.The impedance boundary condition is used for scattering from the object coated by thin lossy material.Instead of volume integral equation,surface integral equation is applied in case of thin dielectric sheet through resistive sheet boundary condition.To realize the fast computation of scattering from composite homogeneous dielectric and conductor,the surface integral equation based on equivalence principle is used.Compared with the traditional volume integral equation,the surface integral equation reduces greatly the number of unknowns.To compute conducting cavity with electrically large aperture,an electric field integral equation is applied.Some numerical results are given to demonstrate the validity and accuracy of the present methods.

  11. Applying 3D measurements and computer matching algorithms to two firearm examination proficiency tests.

    Science.gov (United States)

    Ott, Daniel; Thompson, Robert; Song, Junfeng

    2017-02-01

    In order for a crime laboratory to assess a firearms examiner's training, skills, experience, and aptitude, it is necessary for the examiner to participate in proficiency testing. As computer algorithms for comparisons of pattern evidence become more prevalent, it is of interest to test algorithm performance as well, using these same proficiency examinations. This article demonstrates the use of the Congruent Matching Cell (CMC) algorithm to compare 3D topography measurements of breech face impressions and firing pin impressions from a previously distributed firearms proficiency test. In addition, the algorithm is used to analyze the distribution of many comparisons from a collection of cartridge cases used to construct another recent set of proficiency tests. These results are provided along with visualizations that help to relate the features used in optical comparisons by examiners to the features used by computer comparison algorithms.

  12. Using Computer-Aided Design Software and 3D Printers to Improve Spatial Visualization

    Science.gov (United States)

    Katsio-Loudis, Petros; Jones, Millie

    2015-01-01

    Many articles have been published on the use of 3D printing technology. From prefabricated homes and outdoor structures to human organs, 3D printing technology has found a niche in many fields, but especially education. With the introduction of AutoCAD technical drawing programs and now 3D printing, learners can use 3D printed models to develop…

  13. Using Computer-Aided Design Software and 3D Printers to Improve Spatial Visualization

    Science.gov (United States)

    Katsio-Loudis, Petros; Jones, Millie

    2015-01-01

    Many articles have been published on the use of 3D printing technology. From prefabricated homes and outdoor structures to human organs, 3D printing technology has found a niche in many fields, but especially education. With the introduction of AutoCAD technical drawing programs and now 3D printing, learners can use 3D printed models to develop…

  14. Biotemplate synthesis of polyaniline@cellulose nanowhiskers/natural rubber nanocomposites with 3D hierarchical multiscale structure and improved electrical conductivity.

    Science.gov (United States)

    Wu, Xiaodong; Lu, Canhui; Xu, Haoyu; Zhang, Xinxing; Zhou, Zehang

    2014-12-10

    Development of novel and versatile strategies to construct conductive polymer composites with low percolation thresholds and high mechanical properties is of great importance. In this work, we report a facile and effective strategy to prepare polyaniline@cellulose nanowhiskers (PANI@CNs)/natural rubber (NR) nanocomposites with 3D hierarchical multiscale structure. Specifically, PANI was synthesized in situ on the surface of CNs biotemplate to form PANI@CNs nanohybrids with high aspect ratio and good dispersity. Then NR latex was introduced into PANI@CNs nanohybrids suspension to enable the self-assembly of PANI@CNs nanohybrids onto NR latex microspheres. During cocoagulation process, PANI@CNs nanohybrids selectively located in the interstitial space between NR microspheres and organized into a 3D hierarchical multiscale conductive network structure in NR matrix. The combination of the biotemplate synthesis of PANI and latex cocoagulation method significantly enhanced the electrical conductivity and mechanical properties of the NR-based nanocomposites simultaneously. The electrical conductivity of PANI@CNs/NR nanocomposites containing 5 phr PANI showed 11 orders of magnitude higher than that of the PANI/NR composites at the same loading fraction,; meanwhile, the percolation threshold was drastically decreased from 8.0 to 3.6 vol %.

  15. Hydrothermal synthesis of 3D hierarchical flower-like MoSe2 microspheres and their adsorption performances for methyl orange

    Science.gov (United States)

    Tang, Hua; Huang, Hong; Wang, Xiaoshuai; Wu, Kongqiang; Tang, Guogang; Li, Changsheng

    2016-08-01

    In this paper, we report a facile and versatile modified hydrothermal method for synthesis of three-dimensional (3D) hierarchical flower-like MoSe2 microspheres using selenium powders and sodium molybdate as raw materials. The as-prepared MoSe2 was investigated for application as an adsorbent for the removal of dye contaminants from water. Power X-ray diffraction (XRD), energy dispersive spectroscopy (EDS), scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscope (XPS) and N2 adsorption-desorption analysis were carried out to study the microstructure of the as-synthesized product. A possible growth mechanism of MoSe2 flower-like microspheres was preliminarily proposed on the basis of observation of a time-dependent morphology evolution process. Moreover, the MoSe2 sample exhibited good adsorption properties, with maximum adsorption capacity of 36.91 mg/g for methyl orange. The adsorption process of methyl orange on 3D hierarchical flower-like MoSe2 microspheres was systematically investigated, which was found to obey the pseudo-second-order rate equation and Langmuir adsorption model.

  16. 3D hierarchical rutile TiO2 and metal-free organic sensitizer producing dye-sensitized solar cells 8.6% conversion efficiency.

    Science.gov (United States)

    Lin, Jianjian; Heo, Yoon-Uk; Nattestad, Andrew; Sun, Ziqi; Wang, Lianzhou; Kim, Jung Ho; Dou, Shi Xue

    2014-08-29

    Three-dimensional (3D) hierarchical nanoscale architectures comprised of building blocks, with specifically engineered morphologies, are expected to play important roles in the fabrication of 'next generation' microelectronic and optoelectronic devices due to their high surface-to-volume ratio as well as opto-electronic properties. Herein, a series of well-defined 3D hierarchical rutile TiO2 architectures (HRT) were successfully prepared using a facile hydrothermal method without any surfactant or template, simply by changing the concentration of hydrochloric acid used in the synthesis. The production of these materials provides, to the best of our knowledge, the first identified example of a ledgewise growth mechanism in a rutile TiO2 structure. Also for the first time, a Dye-sensitized Solar Cell (DSC) combining a HRT is reported in conjunction with a high-extinction-coefficient metal-free organic sensitizer (D149), achieving a conversion efficiency of 5.5%, which is superior to ones employing P25 (4.5%), comparable to state-of-the-art commercial transparent titania anatase paste (5.8%). Further to this, an overall conversion efficiency 8.6% was achieved when HRT was used as the light scattering layer, a considerable improvement over the commercial transparent/reflector titania anatase paste (7.6%), a significantly smaller gap in performance than has been seen previously.

  17. Application of 3-D computer graphics for facial reconstruction and comparison with sculpting techniques.

    Science.gov (United States)

    Vanezis, P; Blowes, R W; Linney, A D; Tan, A C; Richards, R; Neave, R

    1989-07-01

    Facial reconstruction has until now been carried out by the sculpting technique. This method involves building a face with clay or other suitable material on to a skull or its cast, taking into account appropriate facial thickness measurements together with information provided by anthropologists such as approximate age, sex, race and other individual idiosyncrasies. A method for facial reconstruction is presented using 3-D computer graphics and is compared with the manual technique. The computer method involves initially digitising a skull using a laser scanner and video camera interfaced to a computer. A face, from a data bank which has previously digitised facial surfaces, is then placed over the skull in the form of a mask and the skin thickness is altered to conform with the underlying skull. The advantage of the computer method is its speed and flexibility. We have shown that the computer method for reconstructing a face is feasible and furthermore has the advantage over the manual technique of speed and flexibility. Nevertheless, the technique is far from perfect. Further facial thickness data needs collecting and the method requires evaluation using both known control skulls and later unknown remains.

  18. Simulation of engine cooling with coupled 1D and 3D flow computation; Simulation der Motorkuehlung mit Hilfe gekoppelter 1D- und 3D-Stroemungsberechnung

    Energy Technology Data Exchange (ETDEWEB)

    Grafenberger, P.; Klinner, P.; Nefischer, P. [BMW Motoren GmbH, Steyr (Austria); Klingebiel, F. [AMSTRAL Engineering fuer Stroemungsmechanik GmbH, Idstein (Germany)

    2000-04-01

    Shorting the development time for new engines and vehicles is leading to the increasing use of computational design and simulation methods in the automotive industry. For several years now, both one-dimensional and three-dimensional flow computation have been used successfully in the development of cooling systems. However, the fact that less hardware is used in the early development stages makes new demands on the quality and quantity of these simulation results. BMW's diesel development division has been able to improve the quality of the results and to reduce the processing time by improving the model quality and by coupling existing 1D and 3D computational fluid dynamic programmes. (orig.) [German] Die Verkuerzung der Entwicklungszeit neuer Motoren und Automobile fuehrt zu einem verstaerkten Einsatz von rechnergestuetzten Konstruktions- und Simulationsmethoden in der Fahrzeugindustrie. Sowohl eindimensionale als auch dreidimensionale Stroemungsberechnungen werden seit Jahren erfolgreich bei der Entwicklung von Kuehlsystemen eingesetzt. Der Entfall von Hardware-Baugruppen in der fruehen Entwicklungsphase stellt jedoch neue Anforderungen an die Qualitaet und Quantitaet dieser Simulationsergebnisse. Durch Verbesserung der Modellqualitaet und durch Kopplung vorhandener 1D- und 3D-Stroemungsberechnungsprogramme konnten in der Dieselmotorenentwicklung von BMW die Qualitaet der Ergebnisse und die Bearbeitungsgeschwindigkeit deutlich gesteigert werden. (orig.)

  19. Hierarchical nanoreinforced composites for highly reliable large wind turbines: Computational modelling and optimization

    DEFF Research Database (Denmark)

    Mishnaevsky, Leon

    2014-01-01

    , with modified, hybridor nanomodified structures. In this project, we seek to explore the potential of hybrid (carbon/glass),nanoreinforced and hierarchical composites (with secondary CNT, graphene or nanoclay reinforcement) as future materials for highly reliable large wind turbines. Using 3D multiscale...... computational models ofthe composites, we study the effect of hybrid structure and of nanomodifications on the strength, lifetime and service properties of the materials (see Figure 1). As a result, a series of recommendations toward the improvement of composites for structural applications under long term...

  20. Leaf-architectured 3D Hierarchical Artificial Photosynthetic System of Perovskite Titanates Towards CO2 Photoreduction Into Hydrocarbon Fuels

    Science.gov (United States)

    Zhou, Han; Guo, Jianjun; Li, Peng; Fan, Tongxiang; Zhang, Di; Ye, Jinhua

    2013-04-01

    The development of an ``artificial photosynthetic system'' (APS) having both the analogous important structural elements and reaction features of photosynthesis to achieve solar-driven water splitting and CO2 reduction is highly challenging. Here, we demonstrate a design strategy for a promising 3D APS architecture as an efficient mass flow/light harvesting network relying on the morphological replacement of a concept prototype-leaf's 3D architecture into perovskite titanates for CO2 photoreduction into hydrocarbon fuels (CO and CH4). The process uses artificial sunlight as the energy source, water as an electron donor and CO2 as the carbon source, mimicking what real leaves do. To our knowledge this is the first example utilizing biological systems as ``architecture-directing agents'' for APS towards CO2 photoreduction, which hints at a more general principle for APS architectures with a great variety of optimized biological geometries. This research would have great significance for the potential realization of global carbon neutral cycle.

  1. "Let's get physical": advantages of a physical model over 3D computer models and textbooks in learning imaging anatomy.

    Science.gov (United States)

    Preece, Daniel; Williams, Sarah B; Lam, Richard; Weller, Renate

    2013-01-01

    Three-dimensional (3D) information plays an important part in medical and veterinary education. Appreciating complex 3D spatial relationships requires a strong foundational understanding of anatomy and mental 3D visualization skills. Novel learning resources have been introduced to anatomy training to achieve this. Objective evaluation of their comparative efficacies remains scarce in the literature. This study developed and evaluated the use of a physical model in demonstrating the complex spatial relationships of the equine foot. It was hypothesized that the newly developed physical model would be more effective for students to learn magnetic resonance imaging (MRI) anatomy of the foot than textbooks or computer-based 3D models. Third year veterinary medicine students were randomly assigned to one of three teaching aid groups (physical model; textbooks; 3D computer model). The comparative efficacies of the three teaching aids were assessed through students' abilities to identify anatomical structures on MR images. Overall mean MRI assessment scores were significantly higher in students utilizing the physical model (86.39%) compared with students using textbooks (62.61%) and the 3D computer model (63.68%) (P computer model groups (P = 0.685). Student feedback was also more positive in the physical model group compared with both the textbook and 3D computer model groups. Our results suggest that physical models may hold a significant advantage over alternative learning resources in enhancing visuospatial and 3D understanding of complex anatomical architecture, and that 3D computer models have significant limitations with regards to 3D learning.

  2. The Effects of 3D Computer Modelling on Conceptual Change about Seasons and Phases of the Moon

    Science.gov (United States)

    Kucukozer, Huseyin

    2008-01-01

    In this study, prospective science teachers' misconceptions about the seasons and the phases of the Moon were determined, and then the effects of 3D computer modelling on their conceptual changes were investigated. The topics were covered in two classes with a total of 76 students using a predict-observe-explain strategy supported by 3D computer…

  3. Segmentation process significantly influences the accuracy of 3D surface models derived from cone beam computed tomography

    NARCIS (Netherlands)

    Fourie, Zacharias; Damstra, Janalt; Schepers, Rutger H; Gerrits, Pieter; Ren, Yijin

    2012-01-01

    AIMS: To assess the accuracy of surface models derived from 3D cone beam computed tomography (CBCT) with two different segmentation protocols. MATERIALS AND METHODS: Seven fresh-frozen cadaver heads were used. There was no conflict of interests in this study. CBCT scans were made of the heads and 3D

  4. The influence of the segmentation process on 3D measurements from cone beam computed tomography-derived surface models

    NARCIS (Netherlands)

    Engelbrecht, Willem P.; Fourie, Zacharias; Damstra, Janalt; Gerrits, Peter O.; Ren, Yijin

    2013-01-01

    To compare the accuracy of linear and angular measurements between cephalometric and anatomic landmarks on surface models derived from 3D cone beam computed tomography (CBCT) with two different segmentation protocols was the aim of this study. CBCT scans were made of cadaver heads and 3D surface mod

  5. Supercapacitance of nitrogen-sulfur-oxygen co-doped 3D hierarchical porous carbon in aqueous and organic electrolyte

    Science.gov (United States)

    Yang, Wang; Yang, Wu; Song, Ailing; Gao, Lijun; Su, Li; Shao, Guangjie

    2017-08-01

    This work report the synthesis of porous carbon with hierarchical pore structure and uniform nitrogen-sulfur-oxygen doping. The favorable pore structure (micro-, meso-, and macro-pores) is beneficial to ion adsorption and transportation, and the doping heteroatoms can introduce electrochemical active sites which contribute to additional pseudocapacitance. Therefore, the carbon material shows good electrochemical performance when employed as supercapacitor electrode. High specific capacitance (367 F g-1 at 0.3 A g-1), good rate performance and stable cycling characteristics are obtained in 6 M KOH. In addition, when tested in 1 M H2SO4, a higher specific capacitance (382 F g-1 at 0.3 A g-1) is delivered. Furthermore, the assembled symmetric cell yields a maximum specific energy of 35.3 W h kg-1 in 1 M TEABF4/AN, significantly improving the specific energy of carbon-based supercapacitors.

  6. Soft computing approach to 3D lung nodule segmentation in CT.

    Science.gov (United States)

    Badura, P; Pietka, E

    2014-10-01

    This paper presents a novel, multilevel approach to the segmentation of various types of pulmonary nodules in computed tomography studies. It is based on two branches of computational intelligence: the fuzzy connectedness (FC) and the evolutionary computation. First, the image and auxiliary data are prepared for the 3D FC analysis during the first stage of an algorithm - the masks generation. Its main goal is to process some specific types of nodules connected to the pleura or vessels. It consists of some basic image processing operations as well as dedicated routines for the specific cases of nodules. The evolutionary computation is performed on the image and seed points in order to shorten the FC analysis and improve its accuracy. After the FC application, the remaining vessels are removed during the postprocessing stage. The method has been validated using the first dataset of studies acquired and described by the Lung Image Database Consortium (LIDC) and by its latest release - the LIDC-IDRI (Image Database Resource Initiative) database.

  7. A 3-D Computational Study of a Variable Camber Continuous Trailing Edge Flap (VCCTEF) Spanwise Segment

    Science.gov (United States)

    Kaul, Upender K.; Nguyen, Nhan T.

    2015-01-01

    Results of a computational study carried out to explore the effects of various elastomer configurations joining spanwise contiguous Variable Camber Continuous Trailing Edge Flap (VCCTEF) segments are reported here. This research is carried out as a proof-of-concept study that will seek to push the flight envelope in cruise with drag optimization as the objective. The cruise conditions can be well off design such as caused by environmental conditions, maneuvering, etc. To handle these off-design conditions, flap deflection is used so when the flap is deflected in a given direction, the aircraft angle of attack changes accordingly to maintain a given lift. The angle of attack is also a design parameter along with the flap deflection. In a previous 2D study,1 the effect of camber was investigated and the results revealed some insight into the relative merit of various camber settings of the VCCTEF. The present state of the art has not advanced sufficiently to do a full 3-D viscous analysis of the whole NASA Generic Transport Model (GTM) wing with VCCTEF deployed with elastomers. Therefore, this study seeks to explore the local effects of three contiguous flap segments on lift and drag of a model devised here to determine possible trades among various flap deflections to achieve desired lift and drag results. Although this approach is an approximation, it provides new insights into the "local" effects of the relative deflections of the contiguous spanwise flap systems and various elastomer segment configurations. The present study is a natural extension of the 2-D study to assess these local 3-D effects. Design cruise condition at 36,000 feet at free stream Mach number of 0.797 and a mean aerodynamic chord (MAC) based Reynolds number of 30.734x10(exp 6) is simulated for an angle of attack (AoA) range of 0 to 6 deg. In the previous 2-D study, the calculations revealed that the parabolic arc camber (1x2x3) and circular arc camber (VCCTEF222) offered the best L

  8. 3-D reconstruction of an ancient Egyptian mummy using X-ray computer tomography.

    Science.gov (United States)

    Baldock, C; Hughes, S W; Whittaker, D K; Taylor, J; Davis, R; Spencer, A J; Tonge, K; Sofat, A

    1994-12-01

    Computer tomography has been used to image and reconstruct in 3-D an Egyptian mummy from the collection of the British Museum. This study of Tjentmutengebtiu, a priestess from the 22nd dynasty (945-715 BC) revealed invaluable information of a scientific, Egyptological and palaeopathological nature without mutilation and destruction of the painted cartonnage case or linen wrappings. Precise details on the removal of the brain through the nasal cavity and the viscera from the abdominal cavity were obtained. The nature and composition of the false eyes were investigated. The detailed analysis of the teeth provided a much closer approximation of age at death. The identification of materials used for the various amulets including that of the figures placed in the viscera was graphically demonstrated using this technique.

  9. ROLE OF COMPUTED TOMOGRAPHY AND 3D RECONSTRUCTIONS IN PELVIC RIM AND ACETABULAR FRACTURES

    Directory of Open Access Journals (Sweden)

    Somasekhar

    2015-03-01

    Full Text Available To determine the role of computed tomography and 3D Reconstructions in classification of pelvic rim and acetabular fractures and assessing possible changes in fracture classification . We collected retrospective information in a period of 18 months in our institution , of patients with pelvic injuries considering --- demographic data , radiological examination performed and the moment when it was performed , fracture classification and management . In 12 cases ( 54% there were isolated pelvic rim fr actures and 7 cases of isolated acetabular fractures ( 32% and 3 cases ( 14% involving both . After the CT scan was obtained , the initial classification was changed in five cases ( 22 . 7% . Tridimensional CT based modeling is very helpful in the classificati on of pelvic fractures and is a complement of the plain X - ray .

  10. Roughness receptivity studies in a 3-D boundary layer - Flight tests and computations

    Science.gov (United States)

    Carpenter, Andrew L.; Saric, William S.; Reed, Helen L.

    The receptivity of 3-D boundary layers to micron-sized, spanwise-periodic Discrete Roughness Elements (DREs) was studied. The DREs were applied to the leading edge of a 30-degree swept-wing at the wavelength of the most unstable disturbance. In this case, calibrated, multi-element hotfilm sensors were used to measure disturbance wall shear stress. The roughness height was varied from 0 to 50 microns. Thus, the disturbance-shear-stress amplitude variations were determined as a function of modulated DRE heights. The computational work was conducted parallel to the flight experiments. The complete viscous flowfield over the O-2 aircraft with the SWIFT model mounted on the port wing store pylon was successfully modeled and validated with the flight data. This highly accurate basic-state solution was incorporated into linear stability calculations and the wave growth associated with the crossflow instability was calculated.

  11. Fatigue of hybrid glass/carbon composites: 3D computational studies

    DEFF Research Database (Denmark)

    Dai, Gaoming; Mishnaevsky, Leon

    2014-01-01

    3D computational simulations of fatigue of hybrid carbon/glass fiber reinforced composites is carried out using X-FEM and multifiber unit cell models. A new software code for the automatic generation of unit cell multifiber models of composites with randomly misaligned fibers of various properties...... and geometrical parameters is developed. With the use of this program code and the X-FEM method, systematic investigations of the effect of microstructure of hybrid composites (fraction of carbon versus glass fibers, misalignment, and interface strength) and the loading conditions (tensile versus compression...... cyclic loading effects) on fatigue behavior of the materials are carried out. It was demonstrated that the higher fraction of carbon fibers in hybrid composites is beneficial for the fatigue lifetime of the composites under tension-tension cyclic loading, but might have negative effect on the lifetime...

  12. 3D FEA Computation of the CLIC Machine Detector Interface Magnets

    CERN Document Server

    Bartalesi, A

    2012-01-01

    A critical aspect of the Compact Linear Collider (CLIC) design is represented by the Accelerator/Experiment interface (called Machine Detector Interface or MDI). In the 3 TeV CLIC layout, the final focus QD0 quadrupole will be located inside the end-cap of the detector itself. This complex MDI scenario required to be simulated with a full 3D-FE analysis. This study was critical to check and control the magnetic cross-talk between the detector solenoid and the final focus magnet and therefore to optimize the design of an “antisolenoids” system needed to shield the QD0 and the e-/e+ beams from the detector magnetic field. In this paper the development and evolution of the computational FE model is presented together with the results obtained and their implication on the CLIC MDI design.

  13. Analysis of 3D Prints by X-ray Computed Microtomography and Terahertz Pulsed Imaging

    DEFF Research Database (Denmark)

    Markl, Daniel; Zeitler, J Axel; Rasch, Cecilie

    2016-01-01

    PURPOSE: A 3D printer was used to realise compartmental dosage forms containing multiple active pharmaceutical ingredient (API) formulations. This work demonstrates the microstructural characterisation of 3D printed solid dosage forms using X-ray computed microtomography (XμCT) and terahertz pulsed...... imaging (TPI). METHODS: Printing was performed with either polyvinyl alcohol (PVA) or polylactic acid (PLA). The structures were examined by XμCT and TPI. Liquid self-nanoemulsifying drug delivery system (SNEDDS) formulations containing saquinavir and halofantrine were incorporated into the 3D printed...... was characterised by XμCT and TPI on the basis of the computer-aided design (CAD) models of the dosage form (compartmentalised PVA structures were 7.5 ± 0.75% larger than designed; n = 3). CONCLUSIONS: The 3D printer can reproduce specific structures very accurately, whereas the 3D prints can deviate from...

  14. Analysis of 3D Prints by X-ray Computed Microtomography and Terahertz Pulsed Imaging

    DEFF Research Database (Denmark)

    Markl, Daniel; Zeitler, J Axel; Rasch, Cecilie

    2017-01-01

    PURPOSE: A 3D printer was used to realise compartmental dosage forms containing multiple active pharmaceutical ingredient (API) formulations. This work demonstrates the microstructural characterisation of 3D printed solid dosage forms using X-ray computed microtomography (XμCT) and terahertz pulsed...... imaging (TPI). METHODS: Printing was performed with either polyvinyl alcohol (PVA) or polylactic acid (PLA). The structures were examined by XμCT and TPI. Liquid self-nanoemulsifying drug delivery system (SNEDDS) formulations containing saquinavir and halofantrine were incorporated into the 3D printed...... was characterised by XμCT and TPI on the basis of the computer-aided design (CAD) models of the dosage form (compartmentalised PVA structures were 7.5 ± 0.75% larger than designed; n = 3). CONCLUSIONS: The 3D printer can reproduce specific structures very accurately, whereas the 3D prints can deviate from...

  15. Computation of a high-resolution MRI 3D stereotaxic atlas of the sheep brain.

    Science.gov (United States)

    Ella, Arsène; Delgadillo, José A; Chemineau, Philippe; Keller, Matthieu

    2017-02-15

    The sheep model was first used in the fields of animal reproduction and veterinary sciences and then was utilized in fundamental and preclinical studies. For more than a decade, magnetic resonance (MR) studies performed on this model have been increasingly reported, especially in the field of neuroscience. To contribute to MR translational neuroscience research, a brain template and an atlas are necessary. We have recently generated the first complete T1-weighted (T1W) and T2W MR population average images (or templates) of in vivo sheep brains. In this study, we 1) defined a 3D stereotaxic coordinate system for previously established in vivo population average templates; 2) used deformation fields obtained during optimized nonlinear registrations to compute nonlinear tissues or prior probability maps (nlTPMs) of cerebrospinal fluid (CSF), gray matter (GM), and white matter (WM) tissues; 3) delineated 25 external and 28 internal sheep brain structures by segmenting both templates and nlTPMs; and 4) annotated and labeled these structures using an existing histological atlas. We built a quality high-resolution 3D atlas of average in vivo sheep brains linked to a reference stereotaxic space. The atlas and nlTPMs, associated with previously computed T1W and T2W in vivo sheep brain templates and nlTPMs, provide a complete set of imaging space that are able to be imported into other imaging software programs and could be used as standardized tools for neuroimaging studies or other neuroscience methods, such as image registration, image segmentation, identification of brain structures, implementation of recording devices, or neuronavigation. J. Comp. Neurol. 525:676-692, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  16. A New Energy-Based Method for 3-D Finite-Element Nonlinear Flux Linkage computation of Electrical Machines

    DEFF Research Database (Denmark)

    Lu, Kaiyuan; Rasmussen, Peter Omand; Ritchie, Ewen

    2011-01-01

    This paper presents a new method for computation of the nonlinear flux linkage in 3-D finite-element models (FEMs) of electrical machines. Accurate computation of the nonlinear flux linkage in 3-D FEM is not an easy task. Compared to the existing energy-perturbation method, the new technique......-perturbation method. The new method proposed is validated using experimental results on two different permanent magnet machines....

  17. Analysis of bite marks in foodstuffs by computer tomography (cone beam CT)--3D reconstruction.

    Science.gov (United States)

    Marques, Jeidson; Musse, Jamilly; Caetano, Catarina; Corte-Real, Francisco; Corte-Real, Ana Teresa

    2013-12-01

    The use of three-dimensional (3D) analysis of forensic evidence is highlighted in comparison with traditional methods. This three-dimensional analysis is based on the registration of the surface from a bitten object. The authors propose to use Cone Beam Computed Tomography (CBCT), which is used in dental practice, in order to study the surface and interior of bitten objects and dental casts of suspects. In this study, CBCT is applied to the analysis of bite marks in foodstuffs, which may be found in a forensic case scenario. 6 different types of foodstuffs were used: chocolate, cheese, apple, chewing gum, pizza and tart (flaky pastry and custard). The food was bitten into and dental casts of the possible suspects were made. The dental casts and bitten objects were registered using an x-ray source and the CBCT equipment iCAT® (Pennsylvania, EUA). The software InVivo5® (Anatomage Inc, EUA) was used to visualize and analyze the tomographic slices and 3D reconstructions of the objects. For each material an estimate of its density was assessed by two methods: HU values and specific gravity. All the used materials were successfully reconstructed as good quality 3D images. The relative densities of the materials in study were compared. Amongst the foodstuffs, the chocolate had the highest density (median value 100.5 HU and 1,36 g/cm(3)), while the pizza showed to have the lowest (median value -775 HU and 0,39 g/cm(3)), on both scales. Through tomographic slices and three-dimensional reconstructions it was possible to perform the metric analysis of the bite marks in all the foodstuffs, except for the pizza. These measurements could also be obtained from the dental casts. The depth of the bite mark was also successfully determined in all the foodstuffs except for the pizza. Cone Beam Computed Tomography has the potential to become an important tool for forensic sciences, namely for the registration and analysis of bite marks in foodstuffs that may be found in a crime

  18. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing.

    Science.gov (United States)

    Leporq, Benjamin; Camarasu-Pop, Sorina; Davila-Serrano, Eduardo E; Pilleul, Frank; Beuf, Olivier

    2013-01-01

    An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI) to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE) imaging are presented. Seven patients (one healthy control and six with chronic liver diseases) were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent) injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today.

  19. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing

    Directory of Open Access Journals (Sweden)

    Benjamin Leporq

    2013-01-01

    Full Text Available An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE imaging are presented. Seven patients (one healthy control and six with chronic liver diseases were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today.

  20. Real-time computer-generated integral imaging and 3D image calibration for augmented reality surgical navigation.

    Science.gov (United States)

    Wang, Junchen; Suenaga, Hideyuki; Liao, Hongen; Hoshi, Kazuto; Yang, Liangjing; Kobayashi, Etsuko; Sakuma, Ichiro

    2015-03-01

    Autostereoscopic 3D image overlay for augmented reality (AR) based surgical navigation has been studied and reported many times. For the purpose of surgical overlay, the 3D image is expected to have the same geometric shape as the original organ, and can be transformed to a specified location for image overlay. However, how to generate a 3D image with high geometric fidelity and quantitative evaluation of 3D image's geometric accuracy have not been addressed. This paper proposes a graphics processing unit (GPU) based computer-generated integral imaging pipeline for real-time autostereoscopic 3D display, and an automatic closed-loop 3D image calibration paradigm for displaying undistorted 3D images. Based on the proposed methods, a novel AR device for 3D image surgical overlay is presented, which mainly consists of a 3D display, an AR window, a stereo camera for 3D measurement, and a workstation for information processing. The evaluation on the 3D image rendering performance with 2560×1600 elemental image resolution shows the rendering speeds of 50-60 frames per second (fps) for surface models, and 5-8 fps for large medical volumes. The evaluation of the undistorted 3D image after the calibration yields sub-millimeter geometric accuracy. A phantom experiment simulating oral and maxillofacial surgery was also performed to evaluate the proposed AR overlay device in terms of the image registration accuracy, 3D image overlay accuracy, and the visual effects of the overlay. The experimental results show satisfactory image registration and image overlay accuracy, and confirm the system usability.

  1. A 3D computer-aided design system applied to diagnosis and treatment planning in orthodontics and orthognathic surgery.

    Science.gov (United States)

    Motohashi, N; Kuroda, T

    1999-06-01

    The purpose of this article is to describe a newly developed 3D computer-aided design (CAD) system for the diagnostic set-up of casts in orthodontic diagnosis and treatment planning, and its preliminary clinical applications. The system comprises a measuring unit which obtains 3D information from the dental model using laser scanning, and a personal computer to generate the 3D graphics. When measuring the 3D shape of the model, to minimize blind sectors, the model is scanned from two different directions with the slit-ray laser beam by rotating the mounting angle of the model on the measuring device. For computed simulation of tooth movement, the representative planes, defined by the anatomical reference points, are formed for each individual tooth and are arranged along a guideline descriptive of the individual arch form. Subsequently, the 3D shape is imparted to each of the teeth arranged on the representative plane to form an arrangement of the 3D profile. When necessary, orthognathic surgery can be simulated by moving the mandibular dental arch three-dimensionally to establish the optimum occlusal relationship. Compared with hand-made set-up models, the computed diagnostic cast has advantages such as high-speed processing and quantitative evaluation on the amount of 3D movement of the individual tooth relative to the craniofacial plane. Trial clinical applications demonstrated that the use of this system facilitated the otherwise complicated and time-consuming mock surgery for treatment planning in orthognathic surgery.

  2. A Fast Full Tensor Gravity computation algorithm for High Resolution 3D Geologic Interpretations

    Science.gov (United States)

    Jayaram, V.; Crain, K.; Keller, G. R.

    2011-12-01

    We present an algorithm to rapidly calculate the vertical gravity and full tensor gravity (FTG) values due to a 3-D geologic model. This algorithm can be implemented on single, multi-core CPU and graphical processing units (GPU) architectures. Our technique is based on the line element approximation with a constant density within each grid cell. This type of parameterization is well suited for high-resolution elevation datasets with grid size typically in the range of 1m to 30m. The large high-resolution data grids in our studies employ a pre-filtered mipmap pyramid type representation for the grid data known as the Geometry clipmap. The clipmap was first introduced by Microsoft Research in 2004 to do fly-through terrain visualization. This method caches nested rectangular extents of down-sampled data layers in the pyramid to create view-dependent calculation scheme. Together with the simple grid structure, this allows the gravity to be computed conveniently on-the-fly, or stored in a highly compressed format. Neither of these capabilities has previously been available. Our approach can perform rapid calculations on large topographies including crustal-scale models derived from complex geologic interpretations. For example, we used a 1KM Sphere model consisting of 105000 cells at 10m resolution with 100000 gravity stations. The line element approach took less than 90 seconds to compute the FTG and vertical gravity on an Intel Core i7 CPU at 3.07 GHz utilizing just its single core. Also, unlike traditional gravity computational algorithms, the line-element approach can calculate gravity effects at locations interior or exterior to the model. The only condition that must be met is the observation point cannot be located directly above the line element. Therefore, we perform a location test and then apply appropriate formulation to those data points. We will present and compare the computational performance of the traditional prism method versus the line element

  3. A Computational Method for 3D Anisotropic Travel-time Tomography of Rocks in the Laboratory

    Science.gov (United States)

    Ghofranitabari, Mehdi; Young, R. Paul

    2013-04-01

    True triaxial loading in the laboratory applies three principal stresses on a cubic rock specimen. Elliptical anisotropy and distributed heterogeneities are introduced in the rock due to closure and opening of the pre-existing cracks and creation and growth of the new aligned cracks. The rock sample is tested in a Geophysical Imaging Cell that is armed with an Acoustic Emission monitoring system which can perform transducer to transducer velocity surveys to image velocity structure of the sample during the experiment. Ultrasonic travel-time tomography as a non-destructive method outfits a map of wave propagation velocity in the sample in order to detect the uniformly distributed or localised heterogeneities and provide the spatial variation and temporal evolution of induced damages in rocks at various stages of loading. The rock sample is partitioned into cubic grid cells as model space. Ray-based tomography method measuring body wave travel time along ray paths between pairs of emitting and receiving transducers is used to calculate isotropic ray-path segment matrix elements (Gij) which contain segment lengths of the ith ray in the jth cell in three dimensions. Synthetic P wave travel times are computed between pairs of transducers in a hypothetical isotropic heterogeneous cubic sample as data space along with an error due to precision of measurement. 3D strain of the squeezed rock and the consequent geometrical deformation is also included in computations for further accuracy. Singular Value Decomposition method is used for the inversion from data space to model space. In the next step, the anisotropic ray-path segment matrix and the corresponded data space are computed for hypothetical anisotropic heterogeneous samples based on the elliptical anisotropic model of velocity which is obtained from the real laboratory experimental data. The method is examined for several different synthetic heterogeneous models. An "Inaccuracy factor" is utilized to inquire the

  4. Facile synthesis of 3D hierarchical foldaway-lantern-like LiMnPO4 by nanoplate self-assembly, and electrochemical performance for Li-ion batteries.

    Science.gov (United States)

    Chen, Dezhi; Wei, Wei; Wang, Ruining; Lang, Xiu-Feng; Tian, Yu; Guo, Lin

    2012-08-01

    Olivine-structured LiMnPO(4) with 3D foldaway-lantern-like hierarchical structures have been prepared via a one-step, template-free, solvothermal approach in ethylene glycol. The foldaway-lantern-like LiMnPO(4) microstructures are composed of numerous nanoplates with thickness of about 20 nm. A series of electron microscopy characterization results indicate that the obtained primary LiMnPO(4) nanoplates are single crystalline in nature, growing along the [010] direction in the (100) plane. Time-dependent morphology evolution suggests that ethylene glycol plays dual roles in oriented growth and self-assembly of such unique structures. After carbon coating, the as-prepared LiMnPO(4) cathode demonstrated a flat potential at 4.1 V versus Li/Li(+) with a specific capacity close to 130 mA h g(-1) at 0.1 C, along with excellent cycling stability.

  5. 3D Animation Essentials

    CERN Document Server

    Beane, Andy

    2012-01-01

    The essential fundamentals of 3D animation for aspiring 3D artists 3D is everywhere--video games, movie and television special effects, mobile devices, etc. Many aspiring artists and animators have grown up with 3D and computers, and naturally gravitate to this field as their area of interest. Bringing a blend of studio and classroom experience to offer you thorough coverage of the 3D animation industry, this must-have book shows you what it takes to create compelling and realistic 3D imagery. Serves as the first step to understanding the language of 3D and computer graphics (CG)Covers 3D anim

  6. Multislice computed tomography angiography in the diagnosis of cardiovascular disease: 3D visualizations

    Institute of Scientific and Technical Information of China (English)

    Zhonghua Sun

    2011-01-01

    Multislice computed tomography (CT) has been widely used in clinical practice for the diagnosis of cardiovascular disease due to its reduced invasiveness and high spatial and temporal resolution.As a reliable alternative to conventional angiography,multislice CT angiography has been recognized as the method of choice for detecting and diagnosing head and neck vascular disease,abdominal aortic aneurysm,aortic dissection,and pulmonary embolism.In patients with suspected coronary artery disease,although invasive coronary angiography still remains as the gold standard technique,multislice CT angiography demonstrates high diagnostic accuracy; in selected patients,it is considered as the first-line technique.The imaging diagnosis of cardiovascular disease is based on a combination of two-dimensional (2D) and three-dimensional (3D) visualization tools to enhance the diagnostic value.This is facilitated by reconstructed visualizations which provide additional information about the extent of the disease,an accurate assessment of the spatial relationship between normal structures and pathological changes,and pre-operative planning and post-procedure follow-up.The aim of the present article is to present an overview of the diagnostic performance of various 2D and 3D CT visualizations in cardiovascular disease,including multiplanar reformation,maximum intensity projection,volume rendering,and virtual intravascular endoscopy.The recognition of the potential value of these visualizations will assist clinicians in efficiently using the muitislice CT imaging modality for the diagnostic management of patients with cardiovascular disease.

  7. Potential hazards of viewing 3-D stereoscopic television, cinema and computer games: a review.

    Science.gov (United States)

    Howarth, Peter A

    2011-03-01

    The visual stimulus provided by a 3-D stereoscopic display differs from that of the real world because the image provided to each eye is produced on a flat surface. The distance from the screen to the eye remains fixed, providing a single focal distance, but the introduction of disparity between the images allows objects to be located geometrically in front of, or behind, the screen. Unlike in the real world, the stimulus to accommodation and the stimulus to convergence do not match. Although this mismatch is used positively in some forms of Orthoptic treatment, a number of authors have suggested that it could negatively lead to the development of asthenopic symptoms. From knowledge of the zone of clear, comfortable, single binocular vision one can predict that, for people with normal binocular vision, adverse symptoms will not be present if the discrepancy is small, but are likely if it is large, and that what constitutes 'large' and 'small' are idiosyncratic to the individual. The accommodation-convergence mismatch is not, however, the only difference between the natural and the artificial stimuli. In the former case, an object located in front of, or behind, a fixated object will not only be perceived as double if the images fall outside Panum's fusional areas, but it will also be defocused and blurred. In the latter case, however, it is usual for the producers of cinema, TV or computer game content to provide an image that is in focus over the whole of the display, and as a consequence diplopic images will be sharply in focus. The size of Panum's fusional area is spatial frequency-dependent, and because of this the high spatial frequencies present in the diplopic 3-D image will provide a different stimulus to the fusion system from that found naturally. © 2011 The College of Optometrists.

  8. 3-D Computational Modelling of Oblique Continental Collision near South Island, New Zealand

    Science.gov (United States)

    Karatun, L.; Pysklywec, R. N.

    2015-12-01

    The research explores the highly oblique continental convergence at the South Island of New Zealand, considering the fundamental geodynamic mechanisms of sub-crustal lithospheric deformation during the orogenesis. In addition to the high velocity of along-strike plate motion, the oppositely verging subduction zones bounding the collision make the problem inherently three-dimensional. To study such factors during orogenesis, we conduct 3D computational modelling and present the results of a series of new experiments configured for the oblique South Island collision. The geodynamic modelling uses ASPECT - a robust highly-scalable and extendable geodynamic code featuring adaptive mesh refinement and complex rheologies. The model domain is defined by a box with prescribed velocities on the left and right faces with varied ratio of convergent versus strike-slip components, periodic boundary conditions for the front and back faces, free surface on top, and free slip at the bottom. Two different rheology types are used: brittle (pressure-, strain rate-, and material strength-dependent) for crust and visco-plastic (temperature-, pressure- and strain rate-dependent) for mantle. The obtained results provide insight into the behaviour of the lithosphere under the situation of young oblique convergence. We focus on the development of the mantle lithosphere, considering how the morphology of the sub-crustal orogenic root evolves during the convergent/strike-slip plate motions. The numerical experiments explore the dependence of this process on such factors as ratio of convergent versus strike-slip motion at the plate boundary, and rheological parameters of crust and mantle. The behaviour of the crust is also tracked to determine how the deep 3D tectonics may manifest at the surface.

  9. Computationally efficient perturbative forward modeling for 3D multispectral bioluminescence and fluorescence tomography

    Science.gov (United States)

    Dutta, Joyita; Ahn, Sangtae; Li, Changqing; Chaudhari, Abhijit J.; Cherry, Simon R.; Leahy, Richard M.

    2008-03-01

    The forward problem of optical bioluminescence and fluorescence tomography seeks to determine, for a given 3D source distribution, the photon density on the surface of an animal. Photon transport through tissues is commonly modeled by the diffusion equation. The challenge, then, is to accurately and efficiently solve the diffusion equation for a realistic animal geometry and heterogeneous tissue types. Fast analytical solvers are available that can be applied to arbitrary geometries but assume homogeneity of tissue optical properties and hence have limited accuracy. The finite element method (FEM) with volume tessellation allows reasonably accurate modeling of both animal geometry and tissue heterogeneity, but this approach is computationally intensive. The computational challenge is heightened when one is working with multispectral data to improve source localization and conditioning of the inverse problem. Here we present a fast forward model based on the Born approximation that falls in between these two approaches. Our model introduces tissue heterogeneity as perturbations in diffusion and absorption coefficients at rectangular grid points inside a mouse atlas. These reflect as a correction term added to the homogeneous forward model. We have tested our model by performing source localization studies first with a biolumnescence simulation setup and then with an experimental setup using a fluorescent source embedded in an inhomogeneous phantom that mimicks tissue optical properties.

  10. Parallel computing simulation of electrical excitation and conduction in the 3D human heart.

    Science.gov (United States)

    Di Yu; Dongping Du; Hui Yang; Yicheng Tu

    2014-01-01

    A correctly beating heart is important to ensure adequate circulation of blood throughout the body. Normal heart rhythm is produced by the orchestrated conduction of electrical signals throughout the heart. Cardiac electrical activity is the resulted function of a series of complex biochemical-mechanical reactions, which involves transportation and bio-distribution of ionic flows through a variety of biological ion channels. Cardiac arrhythmias are caused by the direct alteration of ion channel activity that results in changes in the AP waveform. In this work, we developed a whole-heart simulation model with the use of massive parallel computing with GPGPU and OpenGL. The simulation algorithm was implemented under several different versions for the purpose of comparisons, including one conventional CPU version and two GPU versions based on Nvidia CUDA platform. OpenGL was utilized for the visualization / interaction platform because it is open source, light weight and universally supported by various operating systems. The experimental results show that the GPU-based simulation outperforms the conventional CPU-based approach and significantly improves the speed of simulation. By adopting modern computer architecture, this present investigation enables real-time simulation and visualization of electrical excitation and conduction in the large and complicated 3D geometry of a real-world human heart.

  11. Integrating 3D Flower-Like Hierarchical Cu2NiSnS4 with Reduced Graphene Oxide as Advanced Anode Materials for Na-Ion Batteries.

    Science.gov (United States)

    Yuan, Shuang; Wang, Sai; Li, Lin; Zhu, Yun-hai; Zhang, Xin-bo; Yan, Jun-min

    2016-04-13

    Development of an anode material with high performance and low cost is crucial for implementation of next-generation Na-ion batteries (NIBs) electrode, which is proposed to meet the challenges of large scale renewable energy storage. Metal chalcogenides are considered as promising anode materials for NIBs due to their high theoretical capacity, low cost, and abundant sources. Unfortunately, their practical application in NIBs is still hindered because of low conductivity and morphological collapse caused by their volume expansion and shrinkage during Na(+) intercalation/deintercalation. To solve the daunting challenges, herein, we fabricated novel three-dimensional (3D) Cu2NiSnS4 nanoflowers (CNTSNs) as a proof-of-concept experiment using a facile and low-cost method. Furthermore, homogeneous integration with reduced graphene oxide nanosheets (RGNs) endows intrinsically insulated CNTSNs with superior electrochemical performances, including high specific capacity (up to 837 mAh g(-1)), good rate capability, and long cycling stability, which could be attributed to the unique 3D hierarchical structure providing fast ion diffusion pathway and high contact area at the electrode/electrolyte interface.

  12. Rapid microwave-assisted green synthesis of 3D hierarchical flower-shaped NiCo₂O₄ microsphere for high-performance supercapacitor.

    Science.gov (United States)

    Lei, Ying; Li, Jing; Wang, Yanyan; Gu, Li; Chang, Yuefan; Yuan, Hongyan; Xiao, Dan

    2014-02-12

    Binary metal oxides with three-dimensional (3D) superstructure have been regarded as desirable electrode materials for the supercapacitor due to the combination of the improved electrical conductivity and effective porous structure. 3D hierarchical flower-shaped nickel cobaltite (NiCo2O4) microspheres have been fabricated by a rapid and template-free microwave-assisted heating (MAH) reflux approach followed by pyrolysis of the as-prepared precursors. The flower-shaped NiCo2O4 microspheres, composed of ultrathin nanopetals with thickness of about 15 nm, are endowed with large specific surface area (148.5 m(2) g(-1)) and a narrow pore size distribution (5-10 nm). The as-fabricated porous flower-shaped NiCo2O4 microspheres as electrode materials for supercapacitor exhibited high specific capacitance of 1006 F g(-1) at 1 A g(-1), enhanced rate capability, and excellent electrochemical stability with 93.2% retention after 1000 continuous charge-discharge (CD) cycles even at a high current density of 8 A g(-1). The desirable integrated performance enables it to be a promising electrode material for the electrochemical supercapacitor (EC).

  13. Synthesis of novel 3D SnO flower-like hierarchical architectures self-assembled by nano-leaves and its photocatalysis

    Energy Technology Data Exchange (ETDEWEB)

    Cui, Yongkui; Wang, Fengping, E-mail: fpwang@ustb.edu.cn; Iqbal, M. Zubair; Wang, Ziya; Li, Yan; Tu, Jianhai

    2015-10-15

    Highlights: • Novel 3D SnO flowers self-assembled by 2D nano-leaves were synthesized by hydrothermal method. • The SnO nano-leaf is of single crystalline nature. • The band gap of 2.59 eV of as-prepared products was obtained. • The as-synthesized material will be a promising photocatalytic material. - Abstract: In this report, the novel 3D SnO flower-like hierarchical architectures self-assembled by 2D SnO nano-leaves are successfully synthesized via template-free hydrothermal approach under facile conditions. The high-resolution transmission electron microscopy results demonstrate that the 2D nano-leaves structure is of single crystalline nature. The band gap 2.59 eV for prepared product is obtained from UV–vis diffuse reflectance spectrum. The photocatalysis of the as prepared SnO for degrading methyl orange (MO) has been studied. A good photocatalytic activity is obtained and the mechanism is discussed in detail. Results indicate that the SnO nanostructures are the potential candidates for photocatalyst applications.

  14. Computer-assisted diagnostic system for neurodegenerative dementia using brain SPECT and 3D-SSP

    Energy Technology Data Exchange (ETDEWEB)

    Ishii, Kazunari; Kanda, Tomonori; Uemura, Takafumi; Miyamoto, Naokazu; Yoshikawa, Toshiki [Hyogo Brain and Heart Center, Department of Radiology and Nuclear Medicine, Himeji, Hyogo (Japan); Shimada, Kenichi; Ohkawa, Shingo [Hyogo Brain and Heart Center, Institute for Aging Brain and Cognitive Disorders, Himeji, Hyogo (Japan); Minoshima, Satoshi [University of Washington, Radiology and Bioengineering, Department of Radiology, Seattle, WA (United States)

    2009-05-15

    To develop a computer-assisted automated diagnostic system to distinguish among Alzheimer disease (AD), dementia with Lewy bodies (DLB), and other degenerative disorders in patients with mild dementia. Single photon emission computed tomography (SPECT) images with injection of N-Isopropyl-p-[{sup 123}I]iodoamphetamine (IMP) were obtained from patients with mild degenerative dementia. First, datasets from 20 patients mild AD, 15 patients with dementia with DLB, and 17 healthy controls were used to develop an automated diagnosing system based on three-dimensional stereotactic surface projections (3D-SSP). AD- and DLB-specific regional templates were created using 3D-SSP, and critical Z scores in the templates were established. Datasets from 50 AD patients, 8 DLB patients, and 10 patients with non-AD/DLB type degenerative dementia (5 with frontotemporal dementia and 5 with progressive supranuclear palsy) were then used to test the diagnostic accuracy of the optimized automated system in comparison to the diagnostic interpretation of conventional IMP-SPECT images. These comparisons were performed to differentiate AD and DLB from non-AD/DLB and to distinguish AD from DLB. A receiver operating characteristic (ROC) analysis was performed. The area under the ROC curve (Az) and the accuracy of the automated diagnosis system were 0.89 and 82%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 65%, respectively, for AD vs. DLB patients. The mean Az and the accuracy of the visual inspection were 0.84 and 77%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 65%, respectively, for AD vs. DLB patients. The mean Az and the accuracy of the combination of visual inspection and this system were 0.96 and 91%, respectively, for AD/DLB vs. non-AD/DLB patients, and 0.70 and 66%, respectively, for AD vs. DLB patients. The system developed in the present study achieved as good discrimination of AD, DLB, and other degenerative disorders in patients with mild

  15. 3D printing meets computational astrophysics: deciphering the structure of η Carinae's inner colliding winds

    Science.gov (United States)

    Madura, T. I.; Clementel, N.; Gull, T. R.; Kruip, C. J. H.; Paardekooper, J.-P.

    2015-06-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (≳120 M⊙), highly eccentric (e ˜ 0.9) binary star system η Carinae. We demonstrate the methodology used to incorporate 3D interactive figures into a PDF (Portable Document Format) journal publication and the benefits of using 3D visualization and 3D printing as tools to analyse data from multidimensional numerical simulations. Using a consumer-grade 3D printer (MakerBot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of η Carinae's inner (r ˜ 110 au) wind-wind collision interface at multiple orbital phases. The 3D prints and visualizations reveal important, previously unknown `finger-like' structures at orbital phases shortly after periastron (φ ˜ 1.045) that protrude radially outwards from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. thin-shell, Rayleigh-Taylor) that arise at the interface between the radiatively cooled layer of dense post-shock primary-star wind and the fast (3000 km s-1), adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unrecognized physical features highlight the important role 3D printing and interactive graphics can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  16. A new approach of building 3D visualization framework for multimodal medical images display and computed assisted diagnosis

    Science.gov (United States)

    Li, Zhenwei; Sun, Jianyong; Zhang, Jianguo

    2012-02-01

    As more and more CT/MR studies are scanning with larger volume of data sets, more and more radiologists and clinician would like using PACS WS to display and manipulate these larger data sets of images with 3D rendering features. In this paper, we proposed a design method and implantation strategy to develop 3D image display component not only with normal 3D display functions but also with multi-modal medical image fusion as well as compute-assisted diagnosis of coronary heart diseases. The 3D component has been integrated into the PACS display workstation of Shanghai Huadong Hospital, and the clinical practice showed that it is easy for radiologists and physicians to use these 3D functions such as multi-modalities' (e.g. CT, MRI, PET, SPECT) visualization, registration and fusion, and the lesion quantitative measurements. The users were satisfying with the rendering speeds and quality of 3D reconstruction. The advantages of the component include low requirements for computer hardware, easy integration, reliable performance and comfortable application experience. With this system, the radiologists and the clinicians can manipulate with 3D images easily, and use the advanced visualization tools to facilitate their work with a PACS display workstation at any time.

  17. Detectability of hepatic tumors during 3D post-processed ultrafast cone-beam computed tomography

    Science.gov (United States)

    Paul, Jijo; Vogl, Thomas J.; Chacko, Annamma

    2015-10-01

    To evaluate hepatic tumor detection using ultrafast cone-beam computed tomography (UCBCT) cross-sectional and 3D post-processed image datasets. 657 patients were examined using UCBCT during hepatic transarterial chemoembolization (TACE), and data were collected retrospectively from January 2012 to September 2014. Tumor detectability, diagnostic ability, detection accuracy and sensitivity were examined for different hepatic tumors using UCBCT cross-sectional, perfusion blood volume (PBV) and UCBCT-MRI (magnetic resonance imaging) fused image datasets. Appropriate statistical tests were used to compare collected sample data. Fused image data showed the significantly higher (all P  color display. Fused image data produced 100% tumor sensitivity due to the simultaneous availability of MRI and UCBCT information during tumor diagnosis. Fused image data produced excellent hepatic tumor sensitivity, detectability and diagnostic ability compared to other datasets assessed. Fused image data is extremely reliable and useful compared to UCBCT cross-sectional or PBV image datasets to depict hepatic tumors during TACE. Partial anatomical visualization on cross-sectional images was compensated by fused image data during tumor diagnosis.

  18. Superresolution of 3-D computational integral imaging based on moving least square method.

    Science.gov (United States)

    Kim, Hyein; Lee, Sukho; Ryu, Taekyung; Yoon, Jungho

    2014-11-17

    In this paper, we propose an edge directive moving least square (ED-MLS) based superresolution method for computational integral imaging reconstruction(CIIR). Due to the low resolution of the elemental images and the alignment error of the microlenses, it is not easy to obtain an accurate registration result in integral imaging, which makes it difficult to apply superresolution to the CIIR application. To overcome this problem, we propose the edge directive moving least square (ED-MLS) based superresolution method which utilizes the properties of the moving least square. The proposed ED-MLS based superresolution takes the direction of the edge into account in the moving least square reconstruction to deal with the abrupt brightness changes in the edge regions, and is less sensitive to the registration error. Furthermore, we propose a framework which shows how the data have to be collected for the superresolution problem in the CIIR application. Experimental results verify that the resolution of the elemental images is enhanced, and that a high resolution reconstructed 3-D image can be obtained with the proposed method.

  19. Computer-assisted 3D kinematic analysis of all leg joints in walking insects.

    Directory of Open Access Journals (Sweden)

    John A Bender

    Full Text Available High-speed video can provide fine-scaled analysis of animal behavior. However, extracting behavioral data from video sequences is a time-consuming, tedious, subjective task. These issues are exacerbated where accurate behavioral descriptions require analysis of multiple points in three dimensions. We describe a new computer program written to assist a user in simultaneously extracting three-dimensional kinematics of multiple points on each of an insect's six legs. Digital video of a walking cockroach was collected in grayscale at 500 fps from two synchronized, calibrated cameras. We improved the legs' visibility by painting white dots on the joints, similar to techniques used for digitizing human motion. Compared to manual digitization of 26 points on the legs over a single, 8-second bout of walking (or 106,496 individual 3D points, our software achieved approximately 90% of the accuracy with 10% of the labor. Our experimental design reduced the complexity of the tracking problem by tethering the insect and allowing it to walk in place on a lightly oiled glass surface, but in principle, the algorithms implemented are extensible to free walking. Our software is free and open-source, written in the free language Python and including a graphical user interface for configuration and control. We encourage collaborative enhancements to make this tool both better and widely utilized.

  20. GBM Volumetry using the 3D Slicer Medical Image Computing Platform

    Science.gov (United States)

    Egger, Jan; Kapur, Tina; Fedorov, Andriy; Pieper, Steve; Miller, James V.; Veeraraghavan, Harini; Freisleben, Bernd; Golby, Alexandra J.; Nimsky, Christopher; Kikinis, Ron

    2013-01-01

    Volumetric change in glioblastoma multiforme (GBM) over time is a critical factor in treatment decisions. Typically, the tumor volume is computed on a slice-by-slice basis using MRI scans obtained at regular intervals. (3D)Slicer – a free platform for biomedical research – provides an alternative to this manual slice-by-slice segmentation process, which is significantly faster and requires less user interaction. In this study, 4 physicians segmented GBMs in 10 patients, once using the competitive region-growing based GrowCut segmentation module of Slicer, and once purely by drawing boundaries completely manually on a slice-by-slice basis. Furthermore, we provide a variability analysis for three physicians for 12 GBMs. The time required for GrowCut segmentation was on an average 61% of the time required for a pure manual segmentation. A comparison of Slicer-based segmentation with manual slice-by-slice segmentation resulted in a Dice Similarity Coefficient of 88.43 ± 5.23% and a Hausdorff Distance of 2.32 ± 5.23 mm. PMID:23455483

  1. Real-time 3D computed tomographic reconstruction using commodity graphics hardware

    Science.gov (United States)

    Xu, Fang; Mueller, Klaus

    2007-07-01

    The recent emergence of various types of flat-panel x-ray detectors and C-arm gantries now enables the construction of novel imaging platforms for a wide variety of clinical applications. Many of these applications require interactive 3D image generation, which cannot be satisfied with inexpensive PC-based solutions using the CPU. We present a solution based on commodity graphics hardware (GPUs) to provide these capabilities. While GPUs have been employed for CT reconstruction before, our approach provides significant speedups by exploiting the various built-in hardwired graphics pipeline components for the most expensive CT reconstruction task, backprojection. We show that the timings so achieved are superior to those obtained when using the GPU merely as a multi-processor, without a drop in reconstruction quality. In addition, we also show how the data flow across the graphics pipeline can be optimized, by balancing the load among the pipeline components. The result is a novel streaming CT framework that conceptualizes the reconstruction process as a steady flow of data across a computing pipeline, updating the reconstruction result immediately after the projections have been acquired. Using a single PC equipped with a single high-end commodity graphics board (the Nvidia 8800 GTX), our system is able to process clinically-sized projection data at speeds meeting and exceeding the typical flat-panel detector data production rates, enabling throughput rates of 40-50 projections s-1 for the reconstruction of 5123 volumes.

  2. Real-time 3D computed tomographic reconstruction using commodity graphics hardware

    Energy Technology Data Exchange (ETDEWEB)

    Xu Fang; Mueller, Klaus [Center for Visual Computing, Computer Science Department, Stony Brook University, Stony Brook, NY 11794-4400 (United States)

    2007-07-21

    The recent emergence of various types of flat-panel x-ray detectors and C-arm gantries now enables the construction of novel imaging platforms for a wide variety of clinical applications. Many of these applications require interactive 3D image generation, which cannot be satisfied with inexpensive PC-based solutions using the CPU. We present a solution based on commodity graphics hardware (GPUs) to provide these capabilities. While GPUs have been employed for CT reconstruction before, our approach provides significant speedups by exploiting the various built-in hardwired graphics pipeline components for the most expensive CT reconstruction task, backprojection. We show that the timings so achieved are superior to those obtained when using the GPU merely as a multi-processor, without a drop in reconstruction quality. In addition, we also show how the data flow across the graphics pipeline can be optimized, by balancing the load among the pipeline components. The result is a novel streaming CT framework that conceptualizes the reconstruction process as a steady flow of data across a computing pipeline, updating the reconstruction result immediately after the projections have been acquired. Using a single PC equipped with a single high-end commodity graphics board (the Nvidia 8800 GTX), our system is able to process clinically-sized projection data at speeds meeting and exceeding the typical flat-panel detector data production rates, enabling throughput rates of 40-50 projections s{sup -1} for the reconstruction of 512{sup 3} volumes.

  3. Computed Tomography 3-D Imaging of the Metal Deformation Flow Path in Friction Stir Welding

    Science.gov (United States)

    Schneider, Judy; Beshears, Ronald; Nunes, Arthur C., Jr.

    2005-01-01

    In friction stir welding (FSW), a rotating threaded pin tool is inserted into a weld seam and literally stirs the edges of the seam together. To determine optimal processing parameters for producing a defect free weld, a better understanding of the resulting metal deformation flow path is required. Marker studies are the principal method of studying the metal deformation flow path around the FSW pin tool. In our study, we have used computed tomography (CT) scans to reveal the flow pattern of a lead wire embedded in a FSW weld seam. At the welding temperature of aluminum, the lead becomes molten and is carried with the macro-flow of the weld metal. By using CT images, a 3-dimensional (3D) image of the lead flow pattern can be reconstructed. CT imaging was found to be a convenient and comprehensive way of collecting and displaying tracer data. It marks an advance over previous more tedious and ambiguous radiographic/metallographic data collection methods.

  4. Study of strength properties of ceramic composites with soft filler based on 3D computer simulation

    Science.gov (United States)

    Smolin, Alexey Yu.; Smolin, Igor Yu.; Smolina, Irina Yu.

    2016-11-01

    The movable cellular automaton method which is a computational method of particle mechanics is applied to simulating uniaxial compression of 3D specimens of a ceramic composite. Soft inclusions were considered explicitly by changing the sort (properties) of automata selected randomly from the original fcc packing. The distribution of inclusions in space, their size, and the total fraction were varied. For each value of inclusion fraction, there were generated several representative specimens with individual pore position in space. The resulting magnitudes of the elastic modulus and strength of the specimens were scattered and well described by the Weibull distribution. We showed that to reveal the dependence of the elastic and strength properties of the composite on the inclusion fraction it is much better to consider the mathematical expectation of the corresponding Weibull distribution, rather than the average of the values for the specimens of the same inclusion fraction. It is shown that the relation between the mechanical properties of material and its inclusion fraction depends significantly on the material structure. Namely, percolation transition from isolated inclusions to interconnected clusters of inclusions strongly manifests itself in the dependence of strength on the fraction of inclusions. Thus, the curve of strength versus inclusion fraction fits different equations for a different kind of structure.

  5. UAV and Computer Vision in 3D Modeling of Cultural Heritage in Southern Italy

    Science.gov (United States)

    Barrile, Vincenzo; Gelsomino, Vincenzo; Bilotta, Giuliana

    2017-08-01

    On the Waterfront Italo Falcomatà of Reggio Calabria you can admire the most extensive tract of the walls of the Hellenistic period of ancient city of Rhegion. The so-called Greek Walls are one of the most significant and visible traces of the past linked to the culture of Ancient Greece in the site of Reggio Calabria territory. Over the years this stretch of wall has always been a part, to the reconstruction of Reggio after the earthquake of 1783, the outer walls at all times, restored countless times, to cope with the degradation of the time and the adjustments to the technical increasingly innovative and sophisticated siege. They were the subject of several studies on history, for the study of the construction techniques and the maintenance and restoration of the same. This note describes the methodology for the implementation of a three-dimensional model of the Greek Walls conducted by the Geomatics Laboratory, belonging to DICEAM Department of University “Mediterranea” of Reggio Calabria. 3D modeling we made is based on imaging techniques, such as Digital Photogrammetry and Computer Vision, by using a drone. The acquired digital images were then processed using commercial software Agisoft PhotoScan. The results denote the goodness of the technique used in the field of cultural heritage, attractive alternative to more expensive and demanding techniques such as laser scanning.

  6. Segmentation of 3D ultrasound computer tomography reflection images using edge detection and surface fitting

    Science.gov (United States)

    Hopp, T.; Zapf, M.; Ruiter, N. V.

    2014-03-01

    An essential processing step for comparison of Ultrasound Computer Tomography images to other modalities, as well as for the use in further image processing, is to segment the breast from the background. In this work we present a (semi-) automated 3D segmentation method which is based on the detection of the breast boundary in coronal slice images and a subsequent surface fitting. The method was evaluated using a software phantom and in-vivo data. The fully automatically processed phantom results showed that a segmentation of approx. 10% of the slices of a dataset is sufficient to recover the overall breast shape. Application to 16 in-vivo datasets was performed successfully using semi-automated processing, i.e. using a graphical user interface for manual corrections of the automated breast boundary detection. The processing time for the segmentation of an in-vivo dataset could be significantly reduced by a factor of four compared to a fully manual segmentation. Comparison to manually segmented images identified a smoother surface for the semi-automated segmentation with an average of 11% of differing voxels and an average surface deviation of 2mm. Limitations of the edge detection may be overcome by future updates of the KIT USCT system, allowing a fully-automated usage of our segmentation approach.

  7. Performance Assessment of Three Rendering Engines in 3D Computer Graphics Software

    Directory of Open Access Journals (Sweden)

    Žan Vidmar

    2015-03-01

    Full Text Available The aim of the research was the determination of testing conditions and visual and numerical evaluation of renderings made with three different rendering engines in Maya software, which is widely used for educational and computer art purposes. In the theoretical part the overview of light phenomena and their simulation in virtual space is presented. This is followed by a detailed presentation of the main rendering methods and the results and limitations of their applications to 3D objects. At the end of the theoretical part the importance of a proper testing scene and especially the role of Cornell box are explained. In the experimental part the terms and conditions as well as hardware and software used for the research are presented. This is followed by a description of the procedures, where we focused on the rendering quality and time, which enabled the comparison of settings of different render engines and determination of conditions for further rendering of testing scenes. The experimental part continued with rendering a variety of simple virtual scenes including Cornell box and virtual object with different materials and colours. Apart from visual evaluation, which was the starting point for comparison of renderings, a procedure for numerical estimation and colour deviations of renderings using the selected regions of interest in the final images is presented.

  8. Computationally designed lattices with tuned properties for tissue engineering using 3D printing.

    Science.gov (United States)

    Egan, Paul F; Gonella, Veronica C; Engensperger, Max; Ferguson, Stephen J; Shea, Kristina

    2017-01-01

    Tissue scaffolds provide structural support while facilitating tissue growth, but are challenging to design due to diverse property trade-offs. Here, a computational approach was developed for modeling scaffolds with lattice structures of eight different topologies and assessing properties relevant to bone tissue engineering applications. Evaluated properties include porosity, pore size, surface-volume ratio, elastic modulus, shear modulus, and permeability. Lattice topologies were generated by patterning beam-based unit cells, with design parameters for beam diameter and unit cell length. Finite element simulations were conducted for each topology and quantified how elastic modulus and shear modulus scale with porosity, and how permeability scales with porosity cubed over surface-volume ratio squared. Lattices were compared with controlled properties related to porosity and pore size. Relative comparisons suggest that lattice topology leads to specializations in achievable properties. For instance, Cube topologies tend to have high elastic and low shear moduli while Octet topologies have high shear moduli and surface-volume ratios but low permeability. The developed method was utilized to analyze property trade-offs as beam diameter was altered for a given topology, and used to prototype a 3D printed lattice embedded in an interbody cage for spinal fusion treatments. Findings provide a basis for modeling and understanding relative differences among beam-based lattices designed to facilitate bone tissue growth.

  9. Algorithms for Fast Computing of the 3D-DCT Transform

    Directory of Open Access Journals (Sweden)

    S. Hanus

    2003-04-01

    Full Text Available The algorithm for video compression based on the Three-DimensionalDiscrete Cosine Transform (3D-DCT is presented. The original algorithmof the 3D-DCT has high time complexity. We propose several enhancementsto the original algorithm and make the calculation of the DCT algorithmfeasible for future real-time video compression.

  10. CT Image Sequence Analysis for Object Recognition - A Rule-Based 3-D Computer Vision System

    Science.gov (United States)

    Dongping Zhu; Richard W. Conners; Daniel L. Schmoldt; Philip A. Araman

    1991-01-01

    Research is now underway to create a vision system for hardwood log inspection using a knowledge-based approach. In this paper, we present a rule-based, 3-D vision system for locating and identifying wood defects using topological, geometric, and statistical attributes. A number of different features can be derived from the 3-D input scenes. These features and evidence...

  11. Estimating mass properties of dinosaurs using laser imaging and 3D computer modelling.

    Science.gov (United States)

    Bates, Karl T; Manning, Phillip L; Hodgetts, David; Sellers, William I

    2009-01-01

    Body mass reconstructions of extinct vertebrates are most robust when complete to near-complete skeletons allow the reconstruction of either physical or digital models. Digital models are most efficient in terms of time and cost, and provide the facility to infinitely modify model properties non-destructively, such that sensitivity analyses can be conducted to quantify the effect of the many unknown parameters involved in reconstructions of extinct animals. In this study we use laser scanning (LiDAR) and computer modelling methods to create a range of 3D mass models of five specimens of non-avian dinosaur; two near-complete specimens of Tyrannosaurus rex, the most complete specimens of Acrocanthosaurus atokensis and Strutiomimum sedens, and a near-complete skeleton of a sub-adult Edmontosaurus annectens. LiDAR scanning allows a full mounted skeleton to be imaged resulting in a detailed 3D model in which each bone retains its spatial position and articulation. This provides a high resolution skeletal framework around which the body cavity and internal organs such as lungs and air sacs can be reconstructed. This has allowed calculation of body segment masses, centres of mass and moments or inertia for each animal. However, any soft tissue reconstruction of an extinct taxon inevitably represents a best estimate model with an unknown level of accuracy. We have therefore conducted an extensive sensitivity analysis in which the volumes of body segments and respiratory organs were varied in an attempt to constrain the likely maximum plausible range of mass parameters for each animal. Our results provide wide ranges in actual mass and inertial values, emphasizing the high level of uncertainty inevitable in such reconstructions. However, our sensitivity analysis consistently places the centre of mass well below and in front of hip joint in each animal, regardless of the chosen combination of body and respiratory structure volumes. These results emphasize that future

  12. Estimating mass properties of dinosaurs using laser imaging and 3D computer modelling.

    Directory of Open Access Journals (Sweden)

    Karl T Bates

    Full Text Available Body mass reconstructions of extinct vertebrates are most robust when complete to near-complete skeletons allow the reconstruction of either physical or digital models. Digital models are most efficient in terms of time and cost, and provide the facility to infinitely modify model properties non-destructively, such that sensitivity analyses can be conducted to quantify the effect of the many unknown parameters involved in reconstructions of extinct animals. In this study we use laser scanning (LiDAR and computer modelling methods to create a range of 3D mass models of five specimens of non-avian dinosaur; two near-complete specimens of Tyrannosaurus rex, the most complete specimens of Acrocanthosaurus atokensis and Strutiomimum sedens, and a near-complete skeleton of a sub-adult Edmontosaurus annectens. LiDAR scanning allows a full mounted skeleton to be imaged resulting in a detailed 3D model in which each bone retains its spatial position and articulation. This provides a high resolution skeletal framework around which the body cavity and internal organs such as lungs and air sacs can be reconstructed. This has allowed calculation of body segment masses, centres of mass and moments or inertia for each animal. However, any soft tissue reconstruction of an extinct taxon inevitably represents a best estimate model with an unknown level of accuracy. We have therefore conducted an extensive sensitivity analysis in which the volumes of body segments and respiratory organs were varied in an attempt to constrain the likely maximum plausible range of mass parameters for each animal. Our results provide wide ranges in actual mass and inertial values, emphasizing the high level of uncertainty inevitable in such reconstructions. However, our sensitivity analysis consistently places the centre of mass well below and in front of hip joint in each animal, regardless of the chosen combination of body and respiratory structure volumes. These results emphasize

  13. 3D Printing Meets Computational Astrophysics: Deciphering the Structure of Eta Carinae's Inner Colliding Winds

    CERN Document Server

    Madura, Thomas I; Gull, Theodore R; Kruip, Chael J H; Paardekooper, Jan-Pieter

    2015-01-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (>120 M_Sun), highly eccentric (e ~ 0.9) binary star system Eta Carinae. We demonstrate the methodology used to incorporate 3D interactive figures into a PDF journal publication and the benefits of using 3D visualization and 3D printing as tools to analyze data from multidimensional numerical simulations. Using a consumer-grade 3D printer (MakerBot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics (SPH) simulations of Eta Carinae's inner (r ~ 110 au) wind-wind collision interface at multiple orbital phases. The 3D prints and visualizations reveal important, previously unknown 'finger-like' structures at orbital phases shortly after periastron (phi ~ 1.045) that protrude radially outward from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. thin-shell, Rayleigh-Taylor) that arise a...

  14. Lagrangian Finite Element Method for 3D Time-Dependent Viscoelastic Flow Computations using Integral Models

    DEFF Research Database (Denmark)

    Rasmussen, Henrik Koblitz

    2000-01-01

    The 3D-LIM has as yet been used to simulate the following two three-dimensional problems. First, the method has been used to simulete for viscoelastic end-plate instability that occurs under certain conditions in the transient filament stretching apparatus for pressure sensitive adhesives...... (polymeric melts) and polymeric solutions. Secondly, the 3D-LIM has also been applied to calculate the inflation of a thick sheet of a polymer melt into an elliptic cylinder. These problems all include free surfaces. As the governing equations are solved for the particle positions, the motion of surfaces can...... be followed easily even in 3D viscoelastic flow....

  15. Image quality and effective dose of a robotic flat panel 3D C-arm vs computed tomography.

    Science.gov (United States)

    Kraus, Michael; Fischer, Eric; Gebhard, Florian; Richter, Peter H

    2016-12-01

    The aim of this study was to determine the effective dose and corresponding image quality of different imaging protocols of a robotic 3D flat panel C-arm in comparison to computed tomography (CT). Dose measurements were performed using a Rando-Alderson Phantom. The phantom was exposed to different scanning protocols of the 3D C-arm and the CT. Pedicle screws were inserted in a fresh swine cadaver. Images were obtained using the same scanning protocols. At the thoracolumbar junction, the effective dose was comparable for 3D high-dose protocols, with (4.4 mSv) and without (4.3 mSv) collimation and routine CT (5 mSv), as well as a dose-reduction CT (4.0 mSv). A relevant reduction was achieved with the 3D low-dose protocol (1.0 mSv). Focusing on Th6, a similar reduction with the 3D low-dose protocol was achieved. The image quality of the 3D protocols using titanium screws was rated as 'good' by all viewers, with excellent correlation. Modern intra-operative 3D-C-arms produce images of CT-like quality with low-dose radiation. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  16. Analysis of 3D Prints by X-ray Computed Microtomography and Terahertz Pulsed Imaging.

    Science.gov (United States)

    Markl, Daniel; Zeitler, J Axel; Rasch, Cecilie; Michaelsen, Maria Høtoft; Müllertz, Anette; Rantanen, Jukka; Rades, Thomas; Bøtker, Johan

    2017-05-01

    A 3D printer was used to realise compartmental dosage forms containing multiple active pharmaceutical ingredient (API) formulations. This work demonstrates the microstructural characterisation of 3D printed solid dosage forms using X-ray computed microtomography (XμCT) and terahertz pulsed imaging (TPI). Printing was performed with either polyvinyl alcohol (PVA) or polylactic acid (PLA). The structures were examined by XμCT and TPI. Liquid self-nanoemulsifying drug delivery system (SNEDDS) formulations containing saquinavir and halofantrine were incorporated into the 3D printed compartmentalised structures and in vitro drug release determined. A clear difference in terms of pore structure between PVA and PLA prints was observed by extracting the porosity (5.5% for PVA and 0.2% for PLA prints), pore length and pore volume from the XμCT data. The print resolution and accuracy was characterised by XμCT and TPI on the basis of the computer-aided design (CAD) models of the dosage form (compartmentalised PVA structures were 7.5 ± 0.75% larger than designed; n = 3). The 3D printer can reproduce specific structures very accurately, whereas the 3D prints can deviate from the designed model. The microstructural information extracted by XμCT and TPI will assist to gain a better understanding about the performance of 3D printed dosage forms.

  17. A mechanism for the cortical computation of hierarchical linguistic structure.

    Science.gov (United States)

    Martin, Andrea E; Doumas, Leonidas A A

    2017-03-01

    Biological systems often detect species-specific signals in the environment. In humans, speech and language are species-specific signals of fundamental biological importance. To detect the linguistic signal, human brains must form hierarchical representations from a sequence of perceptual inputs distributed in time. What mechanism underlies this ability? One hypothesis is that the brain repurposed an available neurobiological mechanism when hierarchical linguistic representation became an efficient solution to a computational problem posed to the organism. Under such an account, a single mechanism must have the capacity to perform multiple, functionally related computations, e.g., detect the linguistic signal and perform other cognitive functions, while, ideally, oscillating like the human brain. We show that a computational model of analogy, built for an entirely different purpose-learning relational reasoning-processes sentences, represents their meaning, and, crucially, exhibits oscillatory activation patterns resembling cortical signals elicited by the same stimuli. Such redundancy in the cortical and machine signals is indicative of formal and mechanistic alignment between representational structure building and "cortical" oscillations. By inductive inference, this synergy suggests that the cortical signal reflects structure generation, just as the machine signal does. A single mechanism-using time to encode information across a layered network-generates the kind of (de)compositional representational hierarchy that is crucial for human language and offers a mechanistic linking hypothesis between linguistic representation and cortical computation.

  18. A mechanism for the cortical computation of hierarchical linguistic structure

    Science.gov (United States)

    Doumas, Leonidas A. A.

    2017-01-01

    Biological systems often detect species-specific signals in the environment. In humans, speech and language are species-specific signals of fundamental biological importance. To detect the linguistic signal, human brains must form hierarchical representations from a sequence of perceptual inputs distributed in time. What mechanism underlies this ability? One hypothesis is that the brain repurposed an available neurobiological mechanism when hierarchical linguistic representation became an efficient solution to a computational problem posed to the organism. Under such an account, a single mechanism must have the capacity to perform multiple, functionally related computations, e.g., detect the linguistic signal and perform other cognitive functions, while, ideally, oscillating like the human brain. We show that a computational model of analogy, built for an entirely different purpose—learning relational reasoning—processes sentences, represents their meaning, and, crucially, exhibits oscillatory activation patterns resembling cortical signals elicited by the same stimuli. Such redundancy in the cortical and machine signals is indicative of formal and mechanistic alignment between representational structure building and “cortical” oscillations. By inductive inference, this synergy suggests that the cortical signal reflects structure generation, just as the machine signal does. A single mechanism—using time to encode information across a layered network—generates the kind of (de)compositional representational hierarchy that is crucial for human language and offers a mechanistic linking hypothesis between linguistic representation and cortical computation. PMID:28253256

  19. A new cone-beam computed tomography system for dental applications with innovative 3D software

    Energy Technology Data Exchange (ETDEWEB)

    Pasini, Alessandro; Bianconi, D.; Rossi, A. [University of Bologna, Department of Physics, Bologna (Italy); NECTAR Imaging srl Imola (Italy); Casali, F. [University of Bologna, Department of Physics, Bologna (Italy); Bontempi, M. [CEFLA Dental Group Imola (Italy)

    2007-02-15

    Objective Cone beam computed tomography (CBCT) is an important image technique for oral surgery (dentoalveolar surgery and dental implantology) and maxillofacial applications. This technique requires compact sized scanners with a relatively low radiation dosage, which makes them suitable for imaging of the craniofacial region. This article aims to present the concept and the preliminary findings obtained with the prototype of a new CBCT scanner with dedicated 3D software, specifically designed for dental imaging. Methods The prototype implements an X-ray tube with a nominal focal spot of 0.5 mm operating at 70-100 kVp and 1-4 mA. The detector is a 6 in. image intensifier coupled with a digital CCD camera. Dosimetry was performed on a RANDO anthropomorphic phantom using Beryllium Oxide thermo-luminescent dosimeters positioned in the phantom in the following site: eyes, thyroid, skin (lips, cheeks, back of the neck), brain, mandible, maxilla and parotid glands. Doses were measured using four configurations, changing the field-of-view (4'' and 6'') and acquisition time (10 and 20 s) of the CBCT. Acquisitions were performed with different parameters regarding the x-ray tube, pixel size and acquisition geometries to evaluate image quality in relation to modulation transfer function (MTF), noise and geometric accuracy. Results The prototype was able to acquire a complete maxillofacial scan in 10-15 s. The CT reconstruction algorithm delivered images that were judged to have high quality, allowing for precise volume rendering. The radiation dose was determined to be 1-1.5 times that of the dose applied during conventional dental panoramic studies. Conclusion Preliminary studies using the CBCT prototype indicate that this device provides images with acceptable diagnostic content at a relatively low radiation dosage, if compared to systems currently available on the market. (orig.)

  20. 3D printing of preclinical X-ray computed tomographic data sets.

    Science.gov (United States)

    Doney, Evan; Krumdick, Lauren A; Diener, Justin M; Wathen, Connor A; Chapman, Sarah E; Stamile, Brian; Scott, Jeremiah E; Ravosa, Matthew J; Van Avermaete, Tony; Leevy, W Matthew

    2013-03-22

    Three-dimensional printing allows for the production of highly detailed objects through a process known as additive manufacturing. Traditional, mold-injection methods to create models or parts have several limitations, the most important of which is a difficulty in making highly complex products in a timely, cost-effective manner.(1) However, gradual improvements in three-dimensional printing technology have resulted in both high-end and economy instruments that are now available for the facile production of customized models.(2) These printers have the ability to extrude high-resolution objects with enough detail to accurately represent in vivo images generated from a preclinical X-ray CT scanner. With proper data collection, surface rendering, and stereolithographic editing, it is now possible and inexpensive to rapidly produce detailed skeletal and soft tissue structures from X-ray CT data. Even in the early stages of development, the anatomical models produced by three-dimensional printing appeal to both educators and researchers who can utilize the technology to improve visualization proficiency. (3, 4) The real benefits of this method result from the tangible experience a researcher can have with data that cannot be adequately conveyed through a computer screen. The translation of pre-clinical 3D data to a physical object that is an exact copy of the test subject is a powerful tool for visualization and communication, especially for relating imaging research to students, or those in other fields. Here, we provide a detailed method for printing plastic models of bone and organ structures derived from X-ray CT scans utilizing an Albira X-ray CT system in conjunction with PMOD, ImageJ, Meshlab, Netfabb, and ReplicatorG software packages.

  1. MRI of the cartilages of the knee, 3-D imaging with a rapid computer system

    Energy Technology Data Exchange (ETDEWEB)

    Adam, G.; Bohndorf, K.; Prescher, A.; Drobnitzky, M.; Guenther, R.W.

    1989-01-01

    2-D spin-echo sequences were compared with 3-D gradient-echo sequences using normal and cadaver knee joints. The important advantages of 3-D-imaging are: sections of less than 1 mm, reconstruction in any required plane, which can be related to the complex anatomy of the knee joint, and very good distinction between intra-articular fluid, fibrocartilage and hyaline cartilage. (orig./GDG).

  2. Computer numerical control (CNC) lithography: light-motion synchronized UV-LED lithography for 3D microfabrication

    Science.gov (United States)

    Kim, Jungkwun; Yoon, Yong-Kyu; Allen, Mark G.

    2016-03-01

    This paper presents a computer-numerical-controlled ultraviolet light-emitting diode (CNC UV-LED) lithography scheme for three-dimensional (3D) microfabrication. The CNC lithography scheme utilizes sequential multi-angled UV light exposures along with a synchronized switchable UV light source to create arbitrary 3D light traces, which are transferred into the photosensitive resist. The system comprises a switchable, movable UV-LED array as a light source, a motorized tilt-rotational sample holder, and a computer-control unit. System operation is such that the tilt-rotational sample holder moves in a pre-programmed routine, and the UV-LED is illuminated only at desired positions of the sample holder during the desired time period, enabling the formation of complex 3D microstructures. This facilitates easy fabrication of complex 3D structures, which otherwise would have required multiple manual exposure steps as in the previous multidirectional 3D UV lithography approach. Since it is batch processed, processing time is far less than that of the 3D printing approach at the expense of some reduction in the degree of achievable 3D structure complexity. In order to produce uniform light intensity from the arrayed LED light source, the UV-LED array stage has been kept rotating during exposure. UV-LED 3D fabrication capability was demonstrated through a plurality of complex structures such as V-shaped micropillars, micropanels, a micro-‘hi’ structure, a micro-‘cat’s claw,’ a micro-‘horn,’ a micro-‘calla lily,’ a micro-‘cowboy’s hat,’ and a micro-‘table napkin’ array.

  3. Towards Computing Full 3D Seismic Sensitivity: The Axisymmetric Spectral Element Method

    Science.gov (United States)

    Nissen-Meyer, T.; Fournier, A.; Dahlen, F. A.

    2004-12-01

    Finite frequency tomography has recently provided detailed images of the Earth's deep interior. However, the Fréchet sensitivity kernels used in these inversions are calculated using ray theory and can therefore not account for D''-diffracted phases or any caustics in the wavefield, as e.g. occurring in phases used to map boundary layer topography. Our objective is to compile an extensive set of full sensitivity kernels based on seismic forward modeling to allow for inversion of any seismic phase. The sensitivity of the wavefield due to a scatterer off the theoretical ray path is generally determined by the convolution of the source-to-scatterer response with, using reciprocity, the receiver-to-scatterer response. Thus, exact kernels require the knowledge of the Green's function for the full moment tensor (i.e., source) and body forces (i.e., receiver components) throughout the model space and time. We develop an axisymmetric spectral element method for elastodynamics to serve this purpose. The axisymmetric approach takes advantage of the fact that kernels are computed upon a spherically symmetric Earth model. In this reduced dimension formulation, all moment tensor elements and single forces can be included and collectively unfold in six different 2D problems to be solved separately. The efficient simulations on a 2D mesh then allow for currently unattainable high resolution at low hardware requirements. The displacement field {u} for the 3D sphere can be expressed as {u}( {x}, {t})= {u}( {x}φ =0}, {t}) {f(φ ), where φ =0 represents the 2D computational domain and {f}(φ ) are trigonometric functions. Here, we describe the variational formalism for the full multipole source system and validate its implementation against normal mode solutions for the solid sphere. The global mesh includes several conforming coarsening levels to minimize grid spacing variations. In an effort of algorithmic optimization, the discretization is acquired on the basis of matrix

  4. Development, Verification and Use of Gust Modeling in the NASA Computational Fluid Dynamics Code FUN3D

    Science.gov (United States)

    Bartels, Robert E.

    2012-01-01

    This paper presents the implementation of gust modeling capability in the CFD code FUN3D. The gust capability is verified by computing the response of an airfoil to a sharp edged gust. This result is compared with the theoretical result. The present simulations will be compared with other CFD gust simulations. This paper also serves as a users manual for FUN3D gust analyses using a variety of gust profiles. Finally, the development of an Auto-Regressive Moving-Average (ARMA) reduced order gust model using a gust with a Gaussian profile in the FUN3D code is presented. ARMA simulated results of a sequence of one-minus-cosine gusts is shown to compare well with the same gust profile computed with FUN3D. Proper Orthogonal Decomposition (POD) is combined with the ARMA modeling technique to predict the time varying pressure coefficient increment distribution due to a novel gust profile. The aeroelastic response of a pitch/plunge airfoil to a gust environment is computed with a reduced order model, and compared with a direct simulation of the system in the FUN3D code. The two results are found to agree very well.

  5. Performance comparison of hierarchical checkpoint protocols grid computing

    Directory of Open Access Journals (Sweden)

    Ndeye Massata NDIAYE

    2012-06-01

    Full Text Available Grid infrastructure is a large set of nodes geographically distributed and connected by a communication. In this context, fault tolerance is a necessity imposed by the distribution that poses a number of problems related to the heterogeneity of hardware, operating systems, networks, middleware, applications, the dynamic resource, the scalability, the lack of common memory, the lack of a common clock, the asynchronous communication between processes. To improve the robustness of supercomputing applications in the presence of failures, many techniques have been developed to provide resistance to these faults of the system. Fault tolerance is intended to allow the system to provide service as specified in spite of occurrences of faults. It appears as an indispensable element in distributed systems. To meet this need, several techniques have been proposed in the literature. We will study the protocols based on rollback recovery. These protocols are classified into two categories: coordinated checkpointing and rollback protocols and log-based independent checkpointing protocols or message logging protocols. However, the performance of a protocol depends on the characteristics of the system, network and applications running. Faced with the constraints of large-scale environments, many of algorithms of the literature showed inadequate. Given an application environment and a system, it is not easy to identify the recovery protocol that is most appropriate for a cluster or hierarchical environment, like grid computing. While some protocols have been used successfully in small scale, they are not suitable for use in large scale. Hence there is a need to implement these protocols in a hierarchical fashion to compare their performance in grid computing. In this paper, we propose hierarchical version of four well-known protocols. We have implemented and compare the performance of these protocols in clusters and grid computing using the Omnet++ simulator

  6. CS651 Computer Systems Security Foundations 3d Imagination Cyber Security Management Plan

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Roy S. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-03-02

    3d Imagination is a new company that bases its business on selling and improving 3d open source related hardware. The devices that they sell include 3d imagers, 3d printers, pick and place machines and laser etchers. They have a fast company intranet for ease in sharing, storing and printing large, complex 3d designs. They have an employee set that requires a variety of operating systems including Windows, Mac and a variety of Linux both for running business services as well as design and test machines. There are a wide variety of private networks for testing transfer rates to and from the 3d devices, without interference with other network tra c. They do video conferencing conferencing with customers and other designers. One of their machines is based on the project found at delta.firepick.org(Krassenstein, 2014; Biggs, 2014), which in future, will perform most of those functions. Their devices all include embedded systems, that may have full blown operating systems. Most of their systems are designed to have swappable parts, so when a new technology is born, it can be quickly adopted by people with 3d Imagination hardware. This company is producing a fair number of systems and components, however to get the funding they need to mass produce quality parts, so they are preparing for an IPO to raise the funds they need. They would like to have a cyber-security audit performed so they can give their investors con dence that they are protecting their data, customers information and printers in a proactive manner.

  7. Growth of 3D hierarchical porous NiO@carbon nanoflakes on graphene sheets for high-performance lithium-ion batteries.

    Science.gov (United States)

    Wang, Xiongwei; Zhang, Ludan; Zhang, Zehui; Yu, Aishui; Wu, Peiyi

    2016-02-07

    Nickel oxide (NiO) as one of the anode electrode materials for lithium ion batteries (LIBs) has attracted considerable research attention. However, the poor electron conductivity and bad capacity retention performance greatly hinder its wide application. Herein, we prepared a novel three-dimensional (3D) hierarchical porous graphene@NiO@carbon composite via a simple solvothermal process, in which the graphene sheets were uniformly wrapped by porous NiO@carbon nanoflakes. In this case, nickelocene was creatively used as the precursor for both NiO and amorphous carbon, while graphene oxide sheets were employed as a template for the two-dimensional nanostructure and the conductive graphene backbone. The resultant composites possess high surface area (196 m(2) g(-1)) and large pore volume (0.46 cm(3) g(-1)). When it is applied as an anode for LIBs, the carbon outer-layer can effectively suppress the large volume change and serious aggregation of NiO nanoparticles during the charge-discharge process. Therefore, the graphene@NiO@carbon composites show a high reversible capacity of 1042 mA h g(-1) at a current density of 200 mA g(-1), an excellent rate performance and long cycle life. We believe that our method provides a new route for the fabrication of novel transition metal oxide composites.

  8. High-performance hybrid supercapacitor with 3D hierarchical porous flower-like layered double hydroxide grown on nickel foam as binder-free electrode

    Science.gov (United States)

    Zhang, Luojiang; Hui, Kwun Nam; San Hui, Kwan; Lee, Haiwon

    2016-06-01

    The synthesis of layered double hydroxide (LDH) as electroactive material has been well reported; however, fabricating an LDH electrode with excellent electrochemical performance at high current density remains a challenge. In this paper, we report a 3D hierarchical porous flower-like NiAl-LDH grown on nickel foam (NF) through a liquid-phase deposition method as a high-performance binder-free electrode for energy storage. With large ion-accessible surface area as well as efficient electron and ion transport pathways, the prepared LDH-NF electrode achieves high specific capacity (1250 C g-1 at 2 A g-1 and 401 C g-1 at 50 A g-1) after 5000 cycles of activation at 20 A g-1 and high cycling stability (76.7% retention after another 5000 cycles at 50 A g-1), which is higher than those of most previously reported NiAl-LDH-based materials. Moreover, a hybrid supercapacitor with LDH-NF as the positive electrode and porous graphene nanosheet coated on NF (GNS-NF) as the negative electrode, delivers high energy density (30.2 Wh kg-1 at a power density of 800 W kg-1) and long cycle life, which outperforms the other devices reported in the literature. This study shows that the prepared LDH-NF electrode offers great potential in energy storage device applications.

  9. 3D Nondestructive Visualization and Evaluation of TRISO Particles Distribution in HTGR Fuel Pebbles Using Cone-Beam Computed Tomography

    Directory of Open Access Journals (Sweden)

    Gongyi Yu

    2017-01-01

    Full Text Available A nonuniform distribution of tristructural isotropic (TRISO particles within a high-temperature gas-cooled reactor (HTGR pebble may lead to excessive thermal gradients and nonuniform thermal expansion during operation. If the particles are closely clustered, local hotspots may form, leading to excessive stresses on particle layers and an increased probability of particle failure. Although X-ray digital radiography (DR is currently used to evaluate the TRISO distributions in pebbles, X-ray DR projection images are two-dimensional in nature, which would potentially miss some details for 3D evaluation. This paper proposes a method of 3D visualization and evaluation of the TRISO distribution in HTGR pebbles using cone-beam computed tomography (CBCT: first, a pebble is scanned on our high-resolution CBCT, and 2D cross-sectional images are reconstructed; secondly, all cross-sectional images are restructured to form the 3D model of the pebble; then, volume rendering is applied to segment and display the TRISO particles in 3D for visualization and distribution evaluation. For method validation, several pebbles were scanned and the 3D distributions of the TRISO particles within the pebbles were produced. Experiment results show that the proposed method provides more 3D than DR, which will facilitate pebble fabrication research and production quality control.

  10. Error propagation in the computation of volumes in 3D city models with the Monte Carlo method

    NARCIS (Netherlands)

    Biljecki, F.; Ledoux, H.; Stoter, J.

    2014-01-01

    This paper describes the analysis of the propagation of positional uncertainty in 3D city models to the uncertainty in the computation of their volumes. Current work related to error propagation in GIS is limited to 2D data and 2D GIS operations, especially of rasters. In this research we have (1) d

  11. A collaborative computing framework of cloud network and WBSN applied to fall detection and 3-D motion reconstruction.

    Science.gov (United States)

    Lai, Chin-Feng; Chen, Min; Pan, Jeng-Shyang; Youn, Chan-Hyun; Chao, Han-Chieh

    2014-03-01

    As cloud computing and wireless body sensor network technologies become gradually developed, ubiquitous healthcare services prevent accidents instantly and effectively, as well as provides relevant information to reduce related processing time and cost. This study proposes a co-processing intermediary framework integrated cloud and wireless body sensor networks, which is mainly applied to fall detection and 3-D motion reconstruction. In this study, the main focuses includes distributed computing and resource allocation of processing sensing data over the computing architecture, network conditions and performance evaluation. Through this framework, the transmissions and computing time of sensing data are reduced to enhance overall performance for the services of fall events detection and 3-D motion reconstruction.

  12. Evaluation of the durability of 3D printed keys produced by computational processing of image data

    Science.gov (United States)

    Straub, Jeremy; Kerlin, Scott

    2016-05-01

    Possession of a working 3D printed key can, for most practical purposes, convince observers that an illicit attempt to gain premises access is authorized. This paper seeks to assess three things. First, work has been performed to determine how easily the data for making models of keys can be obtained through manual measurement. It then presents work done to create a model of the key and determine how easy key modeling could be (particularly after a first key of a given key `blank' has been made). Finally, it seeks to assess the durability of the keys produced using 3D printing.

  13. Adapting hierarchical bidirectional inter prediction on a GPU-based platform for 2D and 3D H.264 video coding

    Science.gov (United States)

    Rodríguez-Sánchez, Rafael; Martínez, José Luis; Cock, Jan De; Fernández-Escribano, Gerardo; Pieters, Bart; Sánchez, José L.; Claver, José M.; de Walle, Rik Van

    2013-12-01

    The H.264/AVC video coding standard introduces some improved tools in order to increase compression efficiency. Moreover, the multi-view extension of H.264/AVC, called H.264/MVC, adopts many of them. Among the new features, variable block-size motion estimation is one which contributes to high coding efficiency. Furthermore, it defines a different prediction structure that includes hierarchical bidirectional pictures, outperforming traditional Group of Pictures patterns in both scenarios: single-view and multi-view. However, these video coding techniques have high computational complexity. Several techniques have been proposed in the literature over the last few years which are aimed at accelerating the inter prediction process, but there are no works focusing on bidirectional prediction or hierarchical prediction. In this article, with the emergence of many-core processors or accelerators, a step forward is taken towards an implementation of an H.264/AVC and H.264/MVC inter prediction algorithm on a graphics processing unit. The results show a negligible rate distortion drop with a time reduction of up to 98% for the complete H.264/AVC encoder.

  14. A hierarchical method for molecular docking using cloud computing.

    Science.gov (United States)

    Kang, Ling; Guo, Quan; Wang, Xicheng

    2012-11-01

    Discovering small molecules that interact with protein targets will be a key part of future drug discovery efforts. Molecular docking of drug-like molecules is likely to be valuable in this field; however, the great number of such molecules makes the potential size of this task enormous. In this paper, a method to screen small molecular databases using cloud computing is proposed. This method is called the hierarchical method for molecular docking and can be completed in a relatively short period of time. In this method, the optimization of molecular docking is divided into two subproblems based on the different effects on the protein-ligand interaction energy. An adaptive genetic algorithm is developed to solve the optimization problem and a new docking program (FlexGAsDock) based on the hierarchical docking method has been developed. The implementation of docking on a cloud computing platform is then discussed. The docking results show that this method can be conveniently used for the efficient molecular design of drugs.

  15. Fatigue of multiscale composites with secondary nanoplatelet reinforcement: 3D computational analysis

    DEFF Research Database (Denmark)

    Dai, Gaoming; Mishnaevsky, Leon, Jr.

    2014-01-01

    3D numerical simulations of fatigue damage of multiscale fiber reinforced polymer composites with secondary nanoclay reinforcement are carried out. Macro–micro FE models of the multiscale composites are generated automatically using Python based software. The effect of the nanoclay reinforcement...

  16. Grid-Adapted FUN3D Computations for the Second High Lift Prediction Workshop

    Science.gov (United States)

    Lee-Rausch, E. M.; Rumsey, C. L.; Park, M. A.

    2014-01-01

    Contributions of the unstructured Reynolds-averaged Navier-Stokes code FUN3D to the 2nd AIAA CFD High Lift Prediction Workshop are described, and detailed comparisons are made with experimental data. Using workshop-supplied grids, results for the clean wing configuration are compared with results from the structured code CFL3D Using the same turbulence model, both codes compare reasonably well in terms of total forces and moments, and the maximum lift is similarly over-predicted for both codes compared to experiment. By including more representative geometry features such as slat and flap brackets and slat pressure tube bundles, FUN3D captures the general effects of the Reynolds number variation, but under-predicts maximum lift on workshop-supplied grids in comparison with the experimental data, due to excessive separation. However, when output-based, off-body grid adaptation in FUN3D is employed, results improve considerably. In particular, when the geometry includes both brackets and the pressure tube bundles, grid adaptation results in a more accurate prediction of lift near stall in comparison with the wind-tunnel data. Furthermore, a rotation-corrected turbulence model shows improved pressure predictions on the outboard span when using adapted grids.

  17. Computational Graph Model for 3D Cells Tracking in Zebra Fish Datasets

    Science.gov (United States)

    Zhang, Lelin; Xiong, Hongkai; Zhao, Yang; Zhang, Kai; Zhou, Xiaobo

    2007-11-01

    This paper leads to a novel technique for tracking and identification of zebra-fish cells in 3D image sequences, extending graph-based multi-objects tracking algorithm to 3D applications. As raised in previous work of 2D graph-based method, separated cells are modeled as vertices that connected by edges. Then the tracking work is simplified to that of vertices matching between graphs generated from consecutive frames. Graph-based tracking is composed of three steps: graph generation, initial source vertices selection and graph saturation. To satisfy demands in this work separated cell records are segmented from original datasets using 3D level-set algorithms. Besides, advancements are achieved in each of the step including graph regulations, multi restrictions on source vertices and enhanced flow quantifications. Those strategies make a good compensation for graph-based multi-objects tracking method in 2D space. Experiments are carried out in 3D datasets sampled from zebra fish, results of which shows that this enhanced method could be potentially applied to tracking of objects with diverse features.

  18. 3D computed tomography of an unusual triple ended xiphoid process.

    Science.gov (United States)

    Mosca, Heather; Dross, Peter

    2012-03-01

    The sternum is the site of frequent variations and anomalies. Knowledge of the plain film and CT appearance of these variations and anomalies is useful in differentiating from pathologic conditions and in surgical planning. We present a rare case of an unusual triple ended xiphoid process with its plain film and 3D CT volume rendered reconstructed imaging.

  19. 3D Printing Meets Computational Astrophysics: Deciphering the Structure of Eta Carinae’s Colliding Winds Using 3D Prints of Smoothed Particle Hydrodynamics Simulations

    Science.gov (United States)

    Madura, Thomas; Gull, Theodore R.; Clementel, Nicola; Paardekooper, Jan-Pieter; Kruip, Chael; Corcoran, Michael F.; Hamaguchi, Kenji; Teodoro, Mairan

    2015-01-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (>120 MSun), highly eccentric (e ~ 0.9) binary Eta Carinae. Using a consumer-grade 3D printer (Makerbot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of Eta Carinae's inner (r ~110 AU) wind-wind collision interface at multiple orbital phases. These 3D prints reveal important, previously unknown 'finger-like' structures at orbital phases shortly after periastron (φ ~1.045) that protrude radially outward from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. Rayleigh-Taylor) that arise at the interface between the radiatively-cooled layer of dense post-shock primary-star wind and the hot, adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unknown physical features highlight the important role 3D printing can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  20. Computer system to manage information rigs by 3D electronic models; Sistema computacional para administrar la informacion de plataformas petroleras mediante modelos electronicos 3D

    Energy Technology Data Exchange (ETDEWEB)

    Vazquez Bustos, Jesus; Segura Ozuna, Victor Octavio [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)

    2012-06-22

    The evolution and incorporation of new hardware technologies, as well as recent advances in computer systems have enabled the development of applications of computer aided design of most complete scope, such as those used for the design of industrial process plants. This article describes a software system developed to complement the capabilities of one of these systems for the design of process plants. A 3D electronic model is generated through the user interface of the design system that at the same time gives the user the ability to generate, publish, review and control the engineering document that are generated during the entire life cycle of a marine oil platform, a very particular type of industrial process plant. This way, the user obtains not only a tool for the design of an industrial plant, but also a system for managing information and engineering documents that are developed. This allows the user to do a more efficient job by putting at his disposal and in the same system, all documents and information required to perform his duty. [Spanish] La evolucion e incorporacion de nuevas tecnologias de hardware, junto con los avances recientes en sistemas de computo ha permitido el desarrollo de aplicaciones de interesante diseno de computo de mayor alcance, tales como los que se emplean en las plantas de procesos industriales. Este articulo describe un sistema de software desarrollado para complementar las capacidades de uno de estos sistemas para el diseno de proceso. Un modelo electronico se genera por medio de la interfaz de usuario del sistema de diseno, que al mismo tiempo da al usuario la capacidad para crear, publicar, revisar y controlar los documentos de ingenieria que se producen durante el ciclo de vida completo de una plataforma marina petrolera, un tipo muy particular de planta de proceso industrial. De este modo, el usuario no solo obtiene una herramienta para el diseno de una planta industrial, sino tambien un sistema para manejar informacion y

  1. Generating 3D anatomically detailed models of the retina from OCT data sets: implications for computational modelling

    Science.gov (United States)

    Shalbaf, Farzaneh; Dokos, Socrates; Lovell, Nigel H.; Turuwhenua, Jason; Vaghefi, Ehsan

    2015-12-01

    Retinal prosthesis has been proposed to restore vision for those suffering from the retinal pathologies that mainly affect the photoreceptors layer but keep the inner retina intact. Prior to costly risky experimental studies computational modelling of the retina will help to optimize the device parameters and enhance the outcomes. Here, we developed an anatomically detailed computational model of the retina based on OCT data sets. The consecutive OCT images of individual were subsequently segmented to provide a 3D representation of retina in the form of finite elements. Thereafter, the electrical properties of the retina were modelled by implementing partial differential equation on the 3D mesh. Different electrode configurations, that is bipolar and hexapolar configurations, were implemented and the results were compared with the previous computational and experimental studies. Furthermore, the possible effects of the curvature of retinal layers on the current steering through the retina were proposed and linked to the clinical observations.

  2. CIECAM02 and Perception of Colour in 3D Computer Generated Graphics

    Directory of Open Access Journals (Sweden)

    Bratuž Nika

    2017-04-01

    Full Text Available Kljub tehnološkemu napredku zadnjih stoletij in desetletij se še vedno soočamo s problematiko prikaza in upodobitve barve v različnih medijih in ohranjanja zaznave barve. Ena od možnosti, za katero se lahko odločimo pri zagotavljanju stalne barvne zaznave, so modeli barvnega zaznavanja. Trenutno je aktualen CIECAM02, ki se še vedno ne uporablja v 3D računalniški grafi ki, s katero se vsak dan srečujemo. Namen raziskave je bil pregled barvnih prostorov v 3D računalniški grafiki, pregled reprodukcije barv in materialov, algoritmov za senčenje ter izbranih sodobnih tehnologij upodabljanja za doseganje korektne končne vizualizacije. V nadaljevanju smo želeli proučiti model barvnega zaznavanja CIECAM02 do te mere, da bi ga lahko uporabili v povezavi s 3D računalniško grafiko. V ta namen smo v programu Blender postavili testno sceno in jo upodobili s tremi upodobljevalniki: Blender Render in Cycles, ki sta že vgrajena, in z dodatkom Yafaray. Izkazalo se je, da CIECAM02 lahko uporabimo tudi v 3D prostoru in da z njegovo uporabo dobimo boljše rezultate ujemanja barv pri spremembi ozadja. Poleg tega smo ugotovili, da barv ne upodabljajo vsi upodobljevalniki enako. Omenjena raziskava je aktualna za vse, ki želijo svoje dvo- ali tridimezionalne izdelke predstaviti s pomočjo 3D računalniške grafike, torej tudi za področje vizualizacij oblačil in tekstilnih izdelkov, ki se uporabljajo pri modnem oblikovanju in oblikovanju interjerjev, avtomobilski, navtični in letalski industriji ter tudi širše, kjer so dovršene 3D vizualizacije tekstilij in oblačil nepogrešljivi element vizualnih in grafičnih komunikacij.

  3. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs

    Science.gov (United States)

    Jung, Jin Woo; Lee, Jung-Seob; Cho, Dong-Woo

    2016-02-01

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the simple exterior form has been realized. Here we describe a computer-aided design and manufacturing (CAD/CAM) system for this application. We aim to develop an algorithm to enable easy, intuitive design and fabrication of a heterogeneous cell-laden hydrogel scaffolds with a free-form 3D geometry. The printing paths of the scaffold are automatically generated from the 3D CAD model, and the scaffold is then printed by dispensing four materials; i.e., a frame, two kinds of cell-laden hydrogel and a support. We demonstrated printing of heterogeneous tissue models formed of hydrogel scaffolds using this approach, including the outer ear, kidney and tooth tissue. These results indicate that this approach is particularly promising for tissue engineering and 3D printing applications to regenerate heterogeneous organs and tissues with tailored geometries to treat specific defects or injuries.

  4. Classification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography

    Directory of Open Access Journals (Sweden)

    M. Schmitt

    2015-12-01

    Full Text Available Recent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behaviour of rock-fluid systems. With the availability of 3-D high-resolution imaging (e.g. μ-CT, the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. The results were validated for three sandstones (S1, S2 and S3 from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates and cubes, to characterize asymmetric particles of any material type with 3-D image analysis.

  5. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs.

    Science.gov (United States)

    Jung, Jin Woo; Lee, Jung-Seob; Cho, Dong-Woo

    2016-02-22

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the simple exterior form has been realized. Here we describe a computer-aided design and manufacturing (CAD/CAM) system for this application. We aim to develop an algorithm to enable easy, intuitive design and fabrication of a heterogeneous cell-laden hydrogel scaffolds with a free-form 3D geometry. The printing paths of the scaffold are automatically generated from the 3D CAD model, and the scaffold is then printed by dispensing four materials; i.e., a frame, two kinds of cell-laden hydrogel and a support. We demonstrated printing of heterogeneous tissue models formed of hydrogel scaffolds using this approach, including the outer ear, kidney and tooth tissue. These results indicate that this approach is particularly promising for tissue engineering and 3D printing applications to regenerate heterogeneous organs and tissues with tailored geometries to treat specific defects or injuries.

  6. Identification and classification in le fort type fractures by using 2D and 3D computed tomography

    Institute of Scientific and Technical Information of China (English)

    CHEN We-jian; YANG Yun-jun; FANG Yi-ming; XU Fang-hong; ZHANG Lin; CAO Guo-quan

    2006-01-01

    Objective:To evaluate the usefulness of twodimensional (2D) and three-dimensional (3D) computed tomography (CT) in the identification and classification of Le Fort type fractures.Methods: Sixty-two patients with different types of Le Fort fractures underwent CT scanning and 3D-CT reconstruction. The data were analyzed by multiplanar reconstruction (MPR), surface shaded display (SSD) and volume rendering (VR) respectively.Results: The patients with Le Fort Ⅰ , Le Fort Ⅱfracture and Le Fort Ⅲ fracture accounted for 16.1%,14.5 % and 12.9 % respectively. The compound fractures were the most common type and accounted for 56.5 % ( n =35, 18 cases with Le Fort Ⅰ + Ⅱ fracture, 10 cases with Le Fort Ⅱ + Ⅲ fracture and 7 cases with Le Fort Ⅰ + Ⅱ + Ⅲfracture). Fifty-five cases coexisted with other fractures in maxillofacial region. 2D-CT could be used to define the tiny fractures and the deep-structure fractures more accurately compared with 3D-CT, but the real impression of Le Fort type fractures could not be correctly evaluated on 2D-CT.3D-CT could clearly demonstrate the whole shape of Le Fort type fractures and identify the classification of Le Fort fractures.Conclusions: 3D-CT is the best imaging method for the diagnosis of Le Fort type fractures and can provide valuable information of space relationship, especially for the design of treatment plan before operation.

  7. Use of micro computed-tomography and 3D printing for reverse engineering of mouse embryo nasal capsule

    Science.gov (United States)

    Tesařová, M.; Zikmund, T.; Kaucká, M.; Adameyko, I.; Jaroš, J.; Paloušek, D.; Škaroupka, D.; Kaiser, J.

    2016-03-01

    Imaging of increasingly complex cartilage in vertebrate embryos is one of the key tasks of developmental biology. This is especially important to study shape-organizing processes during initial skeletal formation and growth. Advanced imaging techniques that are reflecting biological needs give a powerful impulse to push the boundaries of biological visualization. Recently, techniques for contrasting tissues and organs have improved considerably, extending traditional 2D imaging approaches to 3D . X-ray micro computed tomography (μCT), which allows 3D imaging of biological objects including their internal structures with a resolution in the micrometer range, in combination with contrasting techniques seems to be the most suitable approach for non-destructive imaging of embryonic developing cartilage. Despite there are many software-based ways for visualization of 3D data sets, having a real solid model of the studied object might give novel opportunities to fully understand the shape-organizing processes in the developing body. In this feasibility study we demonstrated the full procedure of creating a real 3D object of mouse embryo nasal capsule, i.e. the staining, the μCT scanning combined by the advanced data processing and the 3D printing.

  8. Computer-aided diagnosis for osteoporosis using chest 3D CT images

    Science.gov (United States)

    Yoneda, K.; Matsuhiro, M.; Suzuki, H.; Kawata, Y.; Niki, N.; Nakano, Y.; Ohmatsu, H.; Kusumoto, M.; Tsuchida, T.; Eguchi, K.; Kaneko, M.

    2016-03-01

    The patients of osteoporosis comprised of about 13 million people in Japan and it is one of the problems the aging society has. In order to prevent the osteoporosis, it is necessary to do early detection and treatment. Multi-slice CT technology has been improving the three dimensional (3-D) image analysis with higher body axis resolution and shorter scan time. The 3-D image analysis using multi-slice CT images of thoracic vertebra can be used as a support to diagnose osteoporosis and at the same time can be used for lung cancer diagnosis which may lead to early detection. We develop automatic extraction and partitioning algorithm for spinal column by analyzing vertebral body structure, and the analysis algorithm of the vertebral body using shape analysis and a bone density measurement for the diagnosis of osteoporosis. Osteoporosis diagnosis support system obtained high extraction rate of the thoracic vertebral in both normal and low doses.

  9. KNOW-BLADE task-3.3 report: Rotor blade computations with 3D vortex generators

    DEFF Research Database (Denmark)

    Johansen, J.; Sørensen, Niels N.; Reck, M.

    2005-01-01

    . They are: 1) A non-rotating airfoil section with VGs. 2) A rotating airfoil section with VGs. 3) A non-rotating wind turbine blade with VGs. The airfoil section was the FFA-W3-241 airfoil, which has beenmeasured in the VELUX wind tunnel with and without VGs placed at different chord wise positions. Three...... vortex generators in 3D, which eventually generates vortices and mixes the boundary layer.A large effort has been on generating the numerical meshes since this is a relatively complex configuration and a large variation of length and time scales is present. Even though the quantitative agreement...... with measurements is not acceptable the effortspend in the present project indicate that it is possible to investigate the effect of vortex generators on wind turbine blades using 3D Navier-Stokes solvers. Much further work within independence of mesh resolution and time step as well as turbulencemodelling has...

  10. A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery.

    Science.gov (United States)

    Nowell, Mark; Rodionov, Roman; Zombori, Gergely; Sparks, Rachel; Rizzi, Michele; Ourselin, Sebastien; Miserocchi, Anna; McEvoy, Andrew; Duncan, John

    2016-01-01

    Epilepsy surgery is challenging and the use of 3D multimodality image integration (3DMMI) to aid presurgical planning is well-established. Multimodality image integration can be technically demanding, and is underutilised in clinical practice. We have developed a single software platform for image integration, 3D visualization and surgical planning. Here, our pipeline is described in step-by-step fashion, starting with image acquisition, proceeding through image co-registration, manual segmentation, brain and vessel extraction, 3D visualization and manual planning of stereoEEG (SEEG) implantations. With dissemination of the software this pipeline can be reproduced in other centres, allowing other groups to benefit from 3DMMI. We also describe the use of an automated, multi-trajectory planner to generate stereoEEG implantation plans. Preliminary studies suggest this is a rapid, safe and efficacious adjunct for planning SEEG implantations. Finally, a simple solution for the export of plans and models to commercial neuronavigation systems for implementation of plans in the operating theater is described. This software is a valuable tool that can support clinical decision making throughout the epilepsy surgery pathway.

  11. 3D finite element models of shoulder muscles for computing lines of actions and moment arms.

    Science.gov (United States)

    Webb, Joshua D; Blemker, Silvia S; Delp, Scott L

    2014-01-01

    Accurate representation of musculoskeletal geometry is needed to characterise the function of shoulder muscles. Previous models of shoulder muscles have represented muscle geometry as a collection of line segments, making it difficult to account for the large attachment areas, muscle-muscle interactions and complex muscle fibre trajectories typical of shoulder muscles. To better represent shoulder muscle geometry, we developed 3D finite element models of the deltoid and rotator cuff muscles and used the models to examine muscle function. Muscle fibre paths within the muscles were approximated, and moment arms were calculated for two motions: thoracohumeral abduction and internal/external rotation. We found that muscle fibre moment arms varied substantially across each muscle. For example, supraspinatus is considered a weak external rotator, but the 3D model of supraspinatus showed that the anterior fibres provide substantial internal rotation while the posterior fibres act as external rotators. Including the effects of large attachment regions and 3D mechanical interactions of muscle fibres constrains muscle motion, generates more realistic muscle paths and allows deeper analysis of shoulder muscle function.

  12. Fractographic classification in metallic materials by using 3D processing and computer vision techniques

    Directory of Open Access Journals (Sweden)

    Maria Ximena Bastidas-Rodríguez

    2016-09-01

    Full Text Available Failure analysis aims at collecting information about how and why a failure is produced. The first step in this process is a visual inspection on the flaw surface that will reveal the features, marks, and texture, which characterize each type of fracture. This is generally carried out by personnel with no experience that usually lack the knowledge to do it. This paper proposes a classification method for three kinds of fractures in crystalline materials: brittle, fatigue, and ductile. The method uses 3D vision, and it is expected to support failure analysis. The features used in this work were: i Haralick’s features and ii the fractal dimension. These features were applied to 3D images obtained from a confocal laser scanning microscopy Zeiss LSM 700. For the classification, we evaluated two classifiers: Artificial Neural Networks and Support Vector Machine. The performance evaluation was made by extracting four marginal relations from the confusion matrix: accuracy, sensitivity, specificity, and precision, plus three evaluation methods: Receiver Operating Characteristic space, the Individual Classification Success Index, and the Jaccard’s coefficient. Despite the classification percentage obtained by an expert is better than the one obtained with the algorithm, the algorithm achieves a classification percentage near or exceeding the 60 % accuracy for the analyzed failure modes. The results presented here provide a good approach to address future research on texture analysis using 3D data.

  13. Ligand mapping on protein surfaces by the 3D-RISM theory: toward computational fragment-based drug design.

    Science.gov (United States)

    Imai, Takashi; Oda, Koji; Kovalenko, Andriy; Hirata, Fumio; Kidera, Akinori

    2009-09-02

    In line with the recent development of fragment-based drug design, a new computational method for mapping of small ligand molecules on protein surfaces is proposed. The method uses three-dimensional (3D) spatial distribution functions of the atomic sites of the ligand calculated using the molecular theory of solvation, known as the 3D reference interaction site model (3D-RISM) theory, to identify the most probable binding modes of ligand molecules. The 3D-RISM-based method is applied to the binding of several small organic molecules to thermolysin, in order to show its efficiency and accuracy in detecting binding sites. The results demonstrate that our method can reproduce the major binding modes found by X-ray crystallographic studies with sufficient precision. Moreover, the method can successfully identify some binding modes associated with a known inhibitor, which could not be detected by X-ray analysis. The dependence of ligand-binding modes on the ligand concentration, which essentially cannot be treated with other existing computational methods, is also investigated. The results indicate that some binding modes are readily affected by the ligand concentration, whereas others are not significantly altered. In the former case, it is the subtle balance in the binding affinity between the ligand and water that determines the dominant ligand-binding mode.

  14. Recent developments in computer-generated holography: toward a practical electroholography system for interactive 3D visualization

    Science.gov (United States)

    Slinger, Christopher W.; Cameron, Colin D.; Coomber, Stuart D.; Miller, Richard J.; Payne, Doug A.; Smith, Allan P.; Smith, Mark G.; Stanley, Maurice; Watson, Philip J.

    2004-06-01

    This paper will give an overview of some recent developments in electroholography for applications in interactive 3D visualisation. Arguably the ultimate technology for this task, it is the only approach having the potential to deliver full depth cue, 3D images, having resolutions beyond that which can be perceived by the human eye. Despite significant advances by many researchers, the high pixel counts required by the computer generated hologram (CGH) patterns in these systems remain daunting - in practice, systems able to calculate and display reconfigurable CGH having pixel counts of more than one billion may be required for 300 mm width, 3D images. Advances described include novel Fourier mode variants of diffraction specific algorithms and parallel binarisation techniques for design of the CGH patterns; computer architectures for effective implementation of these algorithms for interactive CGH calculation; the latest developments in the Active Tiling spatial light modulator technology and novel replay optics arrangements including folded mirror geometries, viewer tracking alternatives and new horizontal parallax configurations. Throughout, the emphasis is optimisation towards implementation as an interactive electroholography system having practical utility. Some recent results from demonstrations of aspects of the technology will be shown. These include monochrome and colour, static and dynamic, horizontal parallax only (HPO) and full parallax, 3D images, generated from true CGH systems with up to 24 billion pixels.

  15. Computation of thermal properties via 3D homogenization of multiphase materials using FFT-based accelerated scheme

    CERN Document Server

    Lemaitre, Sophie; Choi, Daniel; Karamian, Philippe

    2015-01-01

    In this paper we study the thermal effective behaviour for 3D multiphase composite material consisting of three isotropic phases which are the matrix, the inclusions and the coating media. For this purpose we use an accelerated FFT-based scheme initially proposed in Eyre and Milton (1999) to evaluate the thermal conductivity tensor. Matrix and spherical inclusions media are polymers with similar properties whereas the coating medium is metallic hence better conducting. Thus, the contrast between the coating and the others media is very large. For our study, we use RVEs (Representative volume elements) generated by RSA (Random Sequential Adsorption) method developed in our previous works, then, we compute effective thermal properties using an FFT-based homogenization technique validated by comparison with the direct finite elements method. We study the thermal behaviour of the 3D-multiphase composite material and we show what features should be taken into account to make the computational approach efficient.

  16. Implementation of Headtracking and 3D Stereo with Unity and VRPN for Computer Simulations

    Science.gov (United States)

    Noyes, Matthew A.

    2013-01-01

    This paper explores low-cost hardware and software methods to provide depth cues traditionally absent in monocular displays. The use of a VRPN server in conjunction with a Microsoft Kinect and/or Nintendo Wiimote to provide head tracking information to a Unity application, and NVIDIA 3D Vision for retinal disparity support, is discussed. Methods are suggested to implement this technology with NASA's EDGE simulation graphics package, along with potential caveats. Finally, future applications of this technology to astronaut crew training, particularly when combined with an omnidirectional treadmill for virtual locomotion and NASA's ARGOS system for reduced gravity simulation, are discussed.

  17. 3D game engine design a practical approach to real-time computer graphics

    CERN Document Server

    Eberly, David H

    2006-01-01

    A major revision of the international bestseller on game programming!Graphics hardware has evolved enormously in the last decade. Hardware can now be directly controlled through techniques such as shader programming, which requires an entirely new thought process of a programmer. 3D Game Engine Design, Second Edition shows step-by-step how to make a shader-based graphics engine and how to tame the new technology. Much new material has been added, including more than twice the coverage of the essential techniques of scene graph management, as well as new methods for manag

  18. Computer Graphics Meets Image Fusion: the Power of Texture Baking to Simultaneously Visualise 3d Surface Features and Colour

    Science.gov (United States)

    Verhoeven, G. J.

    2017-08-01

    Since a few years, structure-from-motion and multi-view stereo pipelines have become omnipresent in the cultural heritage domain. The fact that such Image-Based Modelling (IBM) approaches are capable of providing a photo-realistic texture along the threedimensional (3D) digital surface geometry is often considered a unique selling point, certainly for those cases that aim for a visually pleasing result. However, this texture can very often also obscure the underlying geometrical details of the surface, making it very hard to assess the morphological features of the digitised artefact or scene. Instead of constantly switching between the textured and untextured version of the 3D surface model, this paper presents a new method to generate a morphology-enhanced colour texture for the 3D polymesh. The presented approach tries to overcome this switching between objects visualisations by fusing the original colour texture data with a specific depiction of the surface normals. Whether applied to the original 3D surface model or a lowresolution derivative, this newly generated texture does not solely convey the colours in a proper way but also enhances the smalland large-scale spatial and morphological features that are hard or impossible to perceive in the original textured model. In addition, the technique is very useful for low-end 3D viewers, since no additional memory and computing capacity are needed to convey relief details properly. Apart from simple visualisation purposes, the textured 3D models are now also better suited for on-surface interpretative mapping and the generation of line drawings.

  19. 3D Quantification of Mandibular Asymmetry through Cone Beam Computed Tomography

    Science.gov (United States)

    Cevidanes, Lucia H.S.; Alhadidi, Abeer; Paniagua, Beatriz; Styner, Martin; Ludlow, John; Mol, Andre; Turvey, Timothy; Proffit, William R.; Rossouw, Paul Emile

    2011-01-01

    Objective To determine if 3D shape analysis precisely diagnoses right and left differences in asymmetry patients Study Design Cone-beam CT data was acquired pretreatment from 20 patients with mandibular asymmetry. 3D shape analysis was used to localize and quantify the extent of virtually simulated asymmetry. Two approaches were used: (1) mirroring on the midsagittal plane determined from landmarks and (2) mirroring on an arbitrary plane, then registering on the cranial base of the original image. The validation presented in this study used simulated data and has been applied to three clinical cases. Results For mirroring on the midsagittal plane there was a >99% probability that the difference between measured and simulated asymmetry was less than 0.5 mm. For mirroring with cranial base registration, there was a >84% probability of differences less than 0.5 mm. Conclusions Mandibular asymmetry can be precisely quantified with both mirroring methods. Cranial base registration has the potential to be used for patients with trauma situations or when key landmarks are unreliable or absent. PMID:21497527

  20. Leveraging performance of 3D finite difference schemes in large scientific computing simulations

    OpenAIRE

    De la Cruz, Raúl

    2015-01-01

    Gone are the days when engineers and scientists conducted most of their experiments empirically. During these decades, actual tests were carried out in order to assess the robustness and reliability of forthcoming product designs and prove theoretical models. With the advent of the computational era, scientific computing has definetely become a feasible solution compared with empirical methods, in terms of effort, cost and reliability. Large and massively parallel computational resources have...

  1. Leveraging performance of 3D finite difference schemes in large scientific computing simulations

    OpenAIRE

    de la Cruz, Raúl

    2015-01-01

    Gone are the days when engineers and scientists conducted most of their experiments empirically. During these decades, actual tests were carried out in order to assess the robustness and reliability of forthcoming product designs and prove theoretical models. With the advent of the computational era, scientific computing has definetely become a feasible solution compared with empirical methods, in terms of effort, cost and reliability. Large and massively parallel computational resources have...

  2. Modeling and Analysis of a Lunar Space Reactor with the Computer Code RELAP5-3D/ATHENA

    Energy Technology Data Exchange (ETDEWEB)

    Carbajo, Juan J [ORNL; Qualls, A L [ORNL

    2008-01-01

    The transient analysis 3-dimensional (3-D) computer code RELAP5-3D/ATHENA has been employed to model and analyze a space reactor of 180 kW(thermal), 40 kW (net, electrical) with eight Stirling engines (SEs). Each SE will generate over 6 kWe; the excess power will be needed for the pumps and other power management devices. The reactor will be cooled by NaK (a eutectic mixture of sodium and potassium which is liquid at ambient temperature). This space reactor is intended to be deployed over the surface of the Moon or Mars. The reactor operating life will be 8 to 10 years. The RELAP5-3D/ATHENA code is being developed and maintained by Idaho National Laboratory. The code can employ a variety of coolants in addition to water, the original coolant employed with early versions of the code. The code can also use 3-D volumes and 3-D junctions, thus allowing for more realistic representation of complex geometries. A combination of 3-D and 1-D volumes is employed in this study. The space reactor model consists of a primary loop and two secondary loops connected by two heat exchangers (HXs). Each secondary loop provides heat to four SEs. The primary loop includes the nuclear reactor with the lower and upper plena, the core with 85 fuel pins, and two vertical heat exchangers (HX). The maximum coolant temperature of the primary loop is 900 K. The secondary loops also employ NaK as a coolant at a maximum temperature of 877 K. The SEs heads are at a temperature of 800 K and the cold sinks are at a temperature of ~400 K. Two radiators will be employed to remove heat from the SEs. The SE HXs surrounding the SE heads are of annular design and have been modeled using 3-D volumes. These 3-D models have been used to improve the HX design by optimizing the flows of coolant and maximizing the heat transferred to the SE heads. The transients analyzed include failure of one or more Stirling engines, trip of the reactor pump, and trips of the secondary loop pumps feeding the HXs of the

  3. Converting 2D inorganic-organic ZnSe-DETA hybrid nanosheets into 3D hierarchical nanosheet-based ZnSe microspheres with enhanced visible-light-driven photocatalytic performances

    Science.gov (United States)

    Wu, Xuan; Xu, Rui; Zhu, Rongjiao; Wu, Rui; Zhang, Bin

    2015-05-01

    Engineering two-dimensional (2D) nanosheets into three-dimensional (3D) hierarchical structures is one of the great challenges in nanochemistry and materials science. We report a facile and simple chemical conversion route to fabricate 3D hierarchical nanosheet-based ZnSe microspheres by using 2D inorganic-organic hybrid ZnSe-DETA (DETA = diethylenetriamine) nanosheets as the starting precursors. The conversion mechanism involves the controlled depletion of the organic-component (DETA) from the hybrid precursors and the subsequent self-assembly of the remnant inorganic-component (ZnSe). The transformation reaction of ZnSe-DETA nanosheets is mainly influenced by the concentration of DETA in the reaction solution. We demonstrated that this organic-component depletion method could be extended to the synthesis of other hierarchical structures of metal sulfides. In addition, the obtained hierarchical nanosheet-based ZnSe microspheres exhibited outstanding performance in visible light photocatalytic degradation of methyl orange and were highly active for photocatalytic H2 production.Engineering two-dimensional (2D) nanosheets into three-dimensional (3D) hierarchical structures is one of the great challenges in nanochemistry and materials science. We report a facile and simple chemical conversion route to fabricate 3D hierarchical nanosheet-based ZnSe microspheres by using 2D inorganic-organic hybrid ZnSe-DETA (DETA = diethylenetriamine) nanosheets as the starting precursors. The conversion mechanism involves the controlled depletion of the organic-component (DETA) from the hybrid precursors and the subsequent self-assembly of the remnant inorganic-component (ZnSe). The transformation reaction of ZnSe-DETA nanosheets is mainly influenced by the concentration of DETA in the reaction solution. We demonstrated that this organic-component depletion method could be extended to the synthesis of other hierarchical structures of metal sulfides. In addition, the obtained

  4. Implementation of a 3D mixing layer code on parallel computers

    Energy Technology Data Exchange (ETDEWEB)

    Roe, K.; Thakur, R.; Dang, T.; Bogucz, E. [Syracuse Univ., NY (United States)

    1995-09-01

    This paper summarizes our progress and experience in the development of a Computational-Fluid-Dynamics code on parallel computers to simulate three-dimensional spatially-developing mixing layers. In this initial study, the three-dimensional time-dependent Euler equations are solved using a finite-volume explicit time-marching algorithm. The code was first programmed in Fortran 77 for sequential computers. The code was then converted for use on parallel computers using the conventional message-passing technique, while we have not been able to compile the code with the present version of HPF compilers.

  5. Feasibility of differential quantification of 3D temporomandibular kinematics during various oral activities using a cone-beam computed tomography-based 3D fluoroscopic method

    Directory of Open Access Journals (Sweden)

    Chien-Chih Chen

    2013-06-01

    Conclusion: A new CBCT-based 3D fluoroscopic method was proposed and shown to be capable of quantitatively differentiating TMJ movement patterns among complicated functional activities. It also enabled a complete description of the rigid-body mandibular motion and descriptions of as many reference points as needed for future clinical applications. It will be helpful for dental practice and for a better understanding of the functions of the TMJ.

  6. Computer-aided segmentation and 3D analysis of in vivo MRI examinations of the human vocal tract during phonation

    Science.gov (United States)

    Wismüller, Axel; Behrends, Johannes; Hoole, Phil; Leinsinger, Gerda L.; Meyer-Baese, Anke; Reiser, Maximilian F.

    2008-03-01

    We developed, tested, and evaluated a 3D segmentation and analysis system for in vivo MRI examinations of the human vocal tract during phonation. For this purpose, six professionally trained speakers, age 22-34y, were examined using a standardized MRI protocol (1.5 T, T1w FLASH, ST 4mm, 23 slices, acq. time 21s). The volunteers performed a prolonged (>=21s) emission of sounds of the German phonemic inventory. Simultaneous audio tape recording was obtained to control correct utterance. Scans were made in axial, coronal, and sagittal planes each. Computer-aided quantitative 3D evaluation included (i) automated registration of the phoneme-specific data acquired in different slice orientations, (ii) semi-automated segmentation of oropharyngeal structures, (iii) computation of a curvilinear vocal tract midline in 3D by nonlinear PCA, (iv) computation of cross-sectional areas of the vocal tract perpendicular to this midline. For the vowels /a/,/e/,/i/,/o/,/ø/,/u/,/y/, the extracted area functions were used to synthesize phoneme sounds based on an articulatory-acoustic model. For quantitative analysis, recorded and synthesized phonemes were compared, where area functions extracted from 2D midsagittal slices were used as a reference. All vowels could be identified correctly based on the synthesized phoneme sounds. The comparison between synthesized and recorded vowel phonemes revealed that the quality of phoneme sound synthesis was improved for phonemes /a/ and /y/, if 3D instead of 2D data were used, as measured by the average relative frequency shift between recorded and synthesized vowel formants (pproduction.

  7. Computational Finite Element Software Assisted Development of a 3D Inductively Coupled Power Transfer System

    Directory of Open Access Journals (Sweden)

    P. Raval

    2014-02-01

    Full Text Available To date inductively coupled power transfer (ICPT systems have already found many practical applications including battery charging pads. In fact, current charging platforms tend to largely support only one- or two-dimensional planar movement in load. This paper proposes a new concept of extending the aspect ratios of the operating power transfer volume of ICPT systems to support arbitrary three dimensional load movements with respect to the primary coils. This is done by use of modern finite element method analysis software to propose the primary and secondary magnetic structures of such an ICPT system. Firstly, two primary magnetic structures are proposed based on contrasting modes of operation and different field directions. This includes a single-phase and multi-phase current model. Next, a secondary magnetic structure is customized to be compatible with both primary structures. The resulting system is shown to produce a 3D power transfer volume for battery cell charging applications.

  8. Casting directly from a computer model by using advanced simulation software FLOW-3D Cast ®

    Directory of Open Access Journals (Sweden)

    M. Sirviö

    2009-01-01

    Full Text Available ConiferRob - A patternless casting technique, originally conceived at VTT Technical Research Centre of Finland and furtherdeveloped at its spin-off company, Simtech Systems, offers up to 40% savings in product development costs, and up to two months shorterdevelopment times compared to conventional techniques. Savings of this order can be very valuable on today's highly competitivemarkets. Casting simulation is commonly used for designing of casting systems. However, most of the software are today old fashioned and predicting just shrinkage porosity. Flow Science, VTT and Simtech have developed new software called FLOW-3D Cast ® , whichcan simulate surface defects, air entrainment, filters, core gas problems and even a cavitation.

  9. Efficient computation of steady, 3D water-wave patterns, application to hovercraft-type flows

    NARCIS (Netherlands)

    M.R. Lewis; B. Koren (Barry)

    2002-01-01

    textabstractNumerical methods for the computation of stationary free surfaces is the subject of much current research in computational engineering. The present report is directed towards free surfaces in maritime engineering. Of interest here are the long steady waves generated by hovercraft and

  10. Efficient computation of steady, 3D water-wave patterns, application to hovercraft-type flows

    NARCIS (Netherlands)

    Lewis, M.R.; Koren, B.

    2002-01-01

    Numerical methods for the computation of stationary free surfaces is the subject of much current research in computational engineering. The present report is directed towards free surfaces in maritime engineering. Of interest here are the long steady waves generated by hovercraft and ships, the grav

  11. A cubic interpolation pipeline for fast computation of 3D deformation fields modeled using B-splines

    Science.gov (United States)

    Castro-Pareja, Carlos R.; Shekhar, Raj

    2006-02-01

    Fast computation of 3D deformation fields is critical to bringing the application of automated elastic image registration algorithms to routine clinical practice. However, it lies beyond the computational power of current microprocessors; therefore requiring implementations using either massively parallel computers or application-specific hardware accelerators. The use of massively parallel computers in a clinical setting is not practical or cost-effective, therefore making the use of hardware accelerators necessary. We present a hardware pipeline that allows accelerating the computation of 3D deformation fields to speeds up to two orders of magnitude faster than software implementations on current workstations and about 64 times faster than other previously reported architectures. The pipeline implements a version of the free-form deformation calculation algorithm, which is optimized to minimize the number of arithmetic operations required to calculate the transformation of a given set of neighboring voxels, thereby achieving an efficient and compact implementation in hardware which allows its use as part of a larger system.

  12. A novel structured dictionary for fast processing of 3D medical images, with application to computed tomography restoration and denoising

    Science.gov (United States)

    Karimi, Davood; Ward, Rabab K.

    2016-03-01

    Sparse representation of signals in learned overcomplete dictionaries has proven to be a powerful tool with applications in denoising, restoration, compression, reconstruction, and more. Recent research has shown that learned overcomplete dictionaries can lead to better results than analytical dictionaries such as wavelets in almost all image processing applications. However, a major disadvantage of these dictionaries is that their learning and usage is very computationally intensive. In particular, finding the sparse representation of a signal in these dictionaries requires solving an optimization problem that leads to very long computational times, especially in 3D image processing. Moreover, the sparse representation found by greedy algorithms is usually sub-optimal. In this paper, we propose a novel two-level dictionary structure that improves the performance and the speed of standard greedy sparse coding methods. The first (i.e., the top) level in our dictionary is a fixed orthonormal basis, whereas the second level includes the atoms that are learned from the training data. We explain how such a dictionary can be learned from the training data and how the sparse representation of a new signal in this dictionary can be computed. As an application, we use the proposed dictionary structure for removing the noise and artifacts in 3D computed tomography (CT) images. Our experiments with real CT images show that the proposed method achieves results that are comparable with standard dictionary-based methods while substantially reducing the computational time.

  13. 3-D parallel program for numerical calculation of gas dynamics problems with heat conductivity on distributed memory computational systems (CS)

    Energy Technology Data Exchange (ETDEWEB)

    Sofronov, I.D.; Voronin, B.L.; Butnev, O.I. [VNIIEF (Russian Federation)] [and others

    1997-12-31

    The aim of the work performed is to develop a 3D parallel program for numerical calculation of gas dynamics problem with heat conductivity on distributed memory computational systems (CS), satisfying the condition of numerical result independence from the number of processors involved. Two basically different approaches to the structure of massive parallel computations have been developed. The first approach uses the 3D data matrix decomposition reconstructed at temporal cycle and is a development of parallelization algorithms for multiprocessor CS with shareable memory. The second approach is based on using a 3D data matrix decomposition not reconstructed during a temporal cycle. The program was developed on 8-processor CS MP-3 made in VNIIEF and was adapted to a massive parallel CS Meiko-2 in LLNL by joint efforts of VNIIEF and LLNL staffs. A large number of numerical experiments has been carried out with different number of processors up to 256 and the efficiency of parallelization has been evaluated in dependence on processor number and their parameters.

  14. Computer-assisted preoperative planning for reduction of proximal femoral fracture using 3-D-CT data.

    Science.gov (United States)

    Okada, Toshiyuki; Iwasaki, Yuta; Koyama, Tsuyoshi; Sugano, Nobuhiko; Chen, Yen-Wei; Yonenobu, Kazuo; Sato, Yoshinobu

    2009-03-01

    This paper describes procedures for repositioning calculations of fractured bone fragments using 3-D-computed tomography (CT), aimed at preoperative planning for computer-guided fracture reduction of the proximal femur. Fracture boundaries of the bone fragments, as "fracture lines (FLs)," and the mirror-transformed contralateral femur shape extracted from 3-D-CT were used for repositioning of the fragments. We first describe a method for extracting FLs based on 3-D curvature analysis and then formulate repositioning methods based on registration of bone fragments using the following three constraints: 1) contralateral (CL) femur shape; 2) FLs; and 3) both CL femur shape and fracture lines, as "both constraints". We performed experiments using CT datasets from five simulated and four real patients with proximal femoral fracture. We evaluated the rotation error in reposition calculations and the contact ratio between repositioned fragment boundaries, which are crucial for the recovery of proper functional axes and bone adhesion of fragments, respectively. Experimental results showed that good accuracy and stability were attainable when registration using both constraints was performed after registration using the fracture-line constraint. On average, 6.0 degrees +/-0.8 degrees in rotation error and 89%+/-3 % in contact ratio were obtained without providing precise initial values.

  15. Preliminary 3D computational analysis of the relationship between aortic displacement force and direction of endograft movement.

    Science.gov (United States)

    Figueroa, C Alberto; Taylor, Charles A; Yeh, Victoria; Chiou, Allen J; Gorrepati, Madhu L; Zarins, Christopher K

    2010-06-01

    Endograft migration is usually described as a downward displacement of the endograft with respect to the renal arteries. However, change in endograft position is actually a complex process in three-dimensional (3D) space. Currently, there are no established techniques to define such positional changes over time. The purpose of this study is to determine whether the direction of aortic endograft movement as observed in follow-up computed tomography (CT) scans is related to the directional displacement force acting on the endograft. We quantitated the 3D positional change over time of five abdominal endografts by determining the endograft centroid at baseline (postoperative scan) and on follow-up CT scans. The time interval between CT scans for the 5 patients ranged from 8 months to 8 years. We then used 3D image segmentation and computational fluid dynamics (CFD) techniques to quantitate the pulsatile displacement force (in Newtons [N]) acting on the endografts in the postoperative configurations. Finally, we calculated a correlation metric between the direction of the displacement force vector and the endograft movement by computing the cosine of the angle of these two vectors. The average 3D movement of the endograft centroid was 18 mm (range, 9-29 mm) with greater movement in patients with longer follow-up times. In all cases, the movement of the endograft had significant components in all three spatial directions: Two of the endografts had the largest component of movement in the transverse direction, whereas three endografts had the largest component of movement in the axial direction. The magnitude and orientation of the endograft displacement force varied depending on aortic angulation and hemodynamic conditions. The average magnitude of displacement force for all endografts was 5.8 N (range, 3.7-9.5 N). The orientation of displacement force was in general perpendicular to the greatest curvature of the endograft. The average correlation metric, defined as the

  16. Optimization of computations for adjoint field and Jacobian needed in 3D CSEM inversion

    Science.gov (United States)

    Dehiya, Rahul; Singh, Arun; Gupta, Pravin K.; Israil, M.

    2017-01-01

    We present the features and results of a newly developed code, based on Gauss-Newton optimization technique, for solving three-dimensional Controlled-Source Electromagnetic inverse problem. In this code a special emphasis has been put on representing the operations by block matrices for conjugate gradient iteration. We show how in the computation of Jacobian, the matrix formed by differentiation of system matrix can be made independent of frequency to optimize the operations at conjugate gradient step. The coarse level parallel computing, using OpenMP framework, is used primarily due to its simplicity in implementation and accessibility of shared memory multi-core computing machine to almost anyone. We demonstrate how the coarseness of modeling grid in comparison to source (comp`utational receivers) spacing can be exploited for efficient computing, without compromising the quality of the inverted model, by reducing the number of adjoint calls. It is also demonstrated that the adjoint field can even be computed on a grid coarser than the modeling grid without affecting the inversion outcome. These observations were reconfirmed using an experiment design where the deviation of source from straight tow line is considered. Finally, a real field data inversion experiment is presented to demonstrate robustness of the code.

  17. Anthropological facial approximation in three dimensions (AFA3D): computer-assisted estimation of the facial morphology using geometric morphometrics.

    Science.gov (United States)

    Guyomarc'h, Pierre; Dutailly, Bruno; Charton, Jérôme; Santos, Frédéric; Desbarats, Pascal; Coqueugniot, Hélène

    2014-11-01

    This study presents Anthropological Facial Approximation in Three Dimensions (AFA3D), a new computerized method for estimating face shape based on computed tomography (CT) scans of 500 French individuals. Facial soft tissue depths are estimated based on age, sex, corpulence, and craniometrics, and projected using reference planes to obtain the global facial appearance. Position and shape of the eyes, nose, mouth, and ears are inferred from cranial landmarks through geometric morphometrics. The 100 estimated cutaneous landmarks are then used to warp a generic face to the target facial approximation. A validation by re-sampling on a subsample demonstrated an average accuracy of c. 4 mm for the overall face. The resulting approximation is an objective probable facial shape, but is also synthetic (i.e., without texture), and therefore needs to be enhanced artistically prior to its use in forensic cases. AFA3D, integrated in the TIVMI software, is available freely for further testing.

  18. Patient-specific reconstruction utilizing computer assisted 3D modelling for partial bone flap defect in hybrid cranioplasty

    Science.gov (United States)

    Hueh, Low Peh; Abdullah, Johari Yap; Abdullah, Abdul Manaf; Yahya, Suzana; Idris, Zamzuri; Mohamad, Dasmawati

    2016-12-01

    Autologous cranioplasty using a patient's original bone flap remain the commonest practice nowadays. However, partial bone flap defect is commonly encountered. Replacing the bone flap with pre-moulded synthetic bone flap is costly and not affordable to many patients. Hence most of the small to medium size defect was topped up with alloplastic material on a free hand basis intra-operatively which often resulted in inaccurate implant approximation with unsatisfactory cosmetic result. This study aims to evaluate implant accuracy and cosmetic outcome of cranioplasty candidates who underwent partial bone flap reconstruction utilising computer assisted 3D modelling. 3D images of the skull were obtained from post-craniectomy axial 1-mm spiral computed tomography (CT) scans and a virtual 3D model was generated using the Materialise Mimics software. The Materialise 3-Matic was then utilised to design a patient-specific implant. Prefabrication of the implant was performed by the 3D Objet printer, and a negative gypsum mold was created with the prefabricated cranial implant. Intraoperatively, a hybrid polymethyl methacrylate (PMMA)-autologous cranial implant was produced using the gypsum mold, and fit into the cranial defect. This study is still ongoing at the moment. To date, two men has underwent partial bone flap reconstruction utilising this technique and both revealed satisfactory implant alignment with favourable cosmesis. Mean implant size was 12cm2, and the mean duration of intraoperative reconstruction for the partial bone flap defect was 40 minutes. No significant complication was reported. As a conclusion, this new technique and approach resulted in satisfactory implant alignment and favourable cosmetic outcome. However, more study samples are needed to increase the validity of the study results.

  19. Computed tomography study of VAPEX process in laboratory 3D model

    Energy Technology Data Exchange (ETDEWEB)

    Wu, G.Q.; Kantzas, A. [Calgary Univ., AB (Canada). Tomographic Imaging and Porous Media Laboratory; Salama, D. [Nexen Inc., Calgary, AB (Canada)

    2008-07-01

    This paper provided details of a 3-D laboratory model of the VAPEX process that used computerized tomography (CT) to examine vapour chamber expansion behaviour in longitudinal and radial directions. The model was comprised of an aluminum cylinder with 2 slotted tubes installed inside to act as injection and production wells. Propane was used as a solvent with heavy oil. The results of experiments conducted with the model showed that the V shape vapour chamber expansion pattern predicted by the 2-D model was a localized phenomenon. The dominant characteristic of the vapour chamber was an overriding of the injected solvent at the top of the model. The overriding was attributed to gravity segregation. The study also showed that longitudinal expansion was more significant than upwards expansion during the early stages of the VAPEX process. Oil production performance was then examined using different solvent injection rates. An analysis of the CT images was conducted to obtain model porosity, density, and oil saturation profiles. The study demonstrated that pressure cycles caused oil to be produced intermittently. Oil swelling by solvent gas dissolution was an important recovery mechanism. It was concluded that solvent soaking can be used to recover additional residual oil during the VAPEX process. 19 refs., 1 tab., 24 figs.

  20. A 3D Computational Study on the Air-Blast Atomization of a Planar Liquid Layer

    Science.gov (United States)

    Chiodi, Robert; Desjardins, Olivier

    2016-11-01

    The air-blast atomization of a planar liquid layer is a complex fluid phenomenon involving the destabilization of a low speed liquid layer by a high speed gas coflow. While progress has been made in recent years on understanding the instability of the liquid surface, it remains difficult to accurately predict using stability analysis and requires special expertise and equipment to perform thorough experiments. Simulations provide an excellent way to conduct parametric studies to determine the effect of splitter plate geometry and momentum flux ratio on the frequency and wavelengths of instability, however, they are extremely difficult due to the high density ratio and large range of length and time scales present in the flow. Using an accurate conservative level set method in conjunction with a newly reformulated reinitialization equation, we perform 3D simulations of the air-blast atomization of a planar liquid layer and compare them to experiments. We then go on to explore the role momentum flux ratio plays in the longitudinal and transverse wavelengths of instability.

  1. Systematic Standardized and Individualized Assessment of Masticatory Cycles Using Electromagnetic 3D Articulography and Computer Scripts

    Directory of Open Access Journals (Sweden)

    Ramón Fuentes

    2017-01-01

    Full Text Available Masticatory movements are studied for decades in odontology; a better understanding of them could improve dental treatments. The aim of this study was to describe an innovative, accurate, and systematic method of analyzing masticatory cycles, generating comparable quantitative data. The masticatory cycles of 5 volunteers (Class I, 19 ± 1.7 years without articular or dental occlusion problems were evaluated using 3D electromagnetic articulography supported by MATLAB software. The method allows the trajectory morphology of the set of chewing cycles to be analyzed from different views and angles. It was also possible to individualize the trajectory of each cycle providing accurate quantitative data, such as number of cycles, cycle areas in frontal view, and the ratio between each cycle area and the frontal mandibular border movement area. There was a moderate negative correlation (−0.61 between the area and the number of cycles: the greater the cycle area, the smaller the number of repetitions. Finally it was possible to evaluate the area of the cycles through time, which did not reveal a standardized behavior. The proposed method provided reproducible, intelligible, and accurate quantitative and graphical data, suggesting that it is promising and may be applied in different clinical situations and treatments.

  2. 3D computational and experimental radiation transport assessments of Pu-Be sources and graded moderators for parcel screening

    Science.gov (United States)

    Ghita, Gabriel; Sjoden, Glenn; Baciak, James; Huang, Nancy

    2006-05-01

    The Florida Institute for Nuclear Detection and Security (FINDS) is currently working on the design and evaluation of a prototype neutron detector array that may be used for parcel screening systems and homeland security applications. In order to maximize neutron detector response over a wide spectrum of energies, moderator materials of different compositions and amounts are required, and can be optimized through 3-D discrete ordinates and Monte Carlo model simulations verified through measurement. Pu-Be sources can be used as didactic source materials to augment the design, optimization, and construction of detector arrays with proper characterization via transport analysis. To perform the assessments of the Pu-Be Source Capsule, 3-D radiation transport computations are used, including Monte Carlo (MCNP5) and deterministic (PENTRAN) methodologies. In establishing source geometry, we based our model on available source schematic data. Because both the MCNP5 and PENTRAN codes begin with source neutrons, exothermic (α,n) reactions are modeled using the SCALE5 code from ORNL to define the energy spectrum and the decay of the source. We combined our computational results with experimental data to fully validate our computational schemes, tools and models. Results from our computational models will then be used with experiment to generate a mosaic of the radiation spectrum. Finally, we discuss follow-up studies that highlight response optimization efforts in designing, building, and testing an array of detectors with varying moderators/thicknesses tagged to specific responses predicted using 3-D radiation transport models to augment special nuclear materials detection.

  3. Computer-Assisted 3D Structure Elucidation of Natural Products using Residual Dipolar Couplings.

    Science.gov (United States)

    Troche-Pesqueira, Eduardo; Anklin, Clemens; Gil, Roberto R; Navarro-Vázquez, Armando

    2017-03-20

    An enhanced computer-assisted procedure for the determination of the relative configuration of natural products, which starts from the molecular formula and uses a combination of conventional 1D and 2D NMR spectra, and residual dipolar couplings (RDCs), is reported. Having already the data acquired (1D/2D NMR and RDCs), the procedure begins with the determination of the molecular constitution using standard computer-assisted structure elucidation (CASE) and is followed by fully automated determination of relative configuration through RDC analysis. In the case of moderately flexible molecules the simplest data-explaining conformational model is selected by the use of the Akaike information criterion.

  4. Converting 2D inorganic-organic ZnSe-DETA hybrid nanosheets into 3D hierarchical nanosheet-based ZnSe microspheres with enhanced visible-light-driven photocatalytic performances.

    Science.gov (United States)

    Wu, Xuan; Xu, Rui; Zhu, Rongjiao; Wu, Rui; Zhang, Bin

    2015-06-07

    Engineering two-dimensional (2D) nanosheets into three-dimensional (3D) hierarchical structures is one of the great challenges in nanochemistry and materials science. We report a facile and simple chemical conversion route to fabricate 3D hierarchical nanosheet-based ZnSe microspheres by using 2D inorganic-organic hybrid ZnSe-DETA (DETA = diethylenetriamine) nanosheets as the starting precursors. The conversion mechanism involves the controlled depletion of the organic-component (DETA) from the hybrid precursors and the subsequent self-assembly of the remnant inorganic-component (ZnSe). The transformation reaction of ZnSe-DETA nanosheets is mainly influenced by the concentration of DETA in the reaction solution. We demonstrated that this organic-component depletion method could be extended to the synthesis of other hierarchical structures of metal sulfides. In addition, the obtained hierarchical nanosheet-based ZnSe microspheres exhibited outstanding performance in visible light photocatalytic degradation of methyl orange and were highly active for photocatalytic H2 production.

  5. 3-D Computer Animation vs. Live-Action Video: Differences in Viewers' Response to Instructional Vignettes

    Science.gov (United States)

    Smith, Dennie; McLaughlin, Tim; Brown, Irving

    2012-01-01

    This study explored computer animation vignettes as a replacement for live-action video scenarios of classroom behavior situations previously used as an instructional resource in teacher education courses in classroom management strategies. The focus of the research was to determine if the embedded behavioral information perceived in a live-action…

  6. Speeding-up MADYMO 3D on serial and parallel computers using a portable coding environment

    NARCIS (Netherlands)

    Tsiandikos, T.; Rooijackers, H.F.L.; Asperen, F.G.J. van; Lupker, H.A.

    1996-01-01

    This paper outlines the strategy and methodology used to create a portable coding environment for the commercial package MADYMO. The objective is to design a global data structure that efficiently utilises the memory and cache of computers, so that one source code can be used for serial, vector and

  7. A computational model for estimating tumor margins in complementary tactile and 3D ultrasound images

    Science.gov (United States)

    Shamsil, Arefin; Escoto, Abelardo; Naish, Michael D.; Patel, Rajni V.

    2016-03-01

    Conventional surgical methods are effective for treating lung tumors; however, they impose high trauma and pain to patients. Minimally invasive surgery is a safer alternative as smaller incisions are required to reach the lung; however, it is challenging due to inadequate intraoperative tumor localization. To address this issue, a mechatronic palpation device was developed that incorporates tactile and ultrasound sensors capable of acquiring surface and cross-sectional images of palpated tissue. Initial work focused on tactile image segmentation and fusion of position-tracked tactile images, resulting in a reconstruction of the palpated surface to compute the spatial locations of underlying tumors. This paper presents a computational model capable of analyzing orthogonally-paired tactile and ultrasound images to compute the surface circumference and depth margins of a tumor. The framework also integrates an error compensation technique and an algebraic model to align all of the image pairs and to estimate the tumor depths within the tracked thickness of a palpated tissue. For validation, an ex vivo experimental study was conducted involving the complete palpation of 11 porcine liver tissues injected with iodine-agar tumors of varying sizes and shapes. The resulting tactile and ultrasound images were then processed using the proposed model to compute the tumor margins and compare them to fluoroscopy based physical measurements. The results show a good negative correlation (r = -0.783, p = 0.004) between the tumor surface margins and a good positive correlation (r = 0.743, p = 0.009) between the tumor depth margins.

  8. Computation of 3D steady Navier-Stokes flow with free-surface gravity waves

    NARCIS (Netherlands)

    Lewis, M.R.; Koren, B.; Raven, H.C.

    2003-01-01

    In this paper an iterative method for the computation of stationary gravity-wave solutions is investigated, using a novel formulation of the free-surface (FS) boundary-value problem. This method requires the solution of a sequence of stationary Reynolds-Averaged Navier-Stokes subproblems employing t

  9. Computation of 3D Steady Navier-Stokes Flow with Free-Surface Gravity Waves

    NARCIS (Netherlands)

    Lewis, M.R.; Koren, B.; Raven, H.C.

    2003-01-01

    In this paper an iterative method for the computation of stationary gravity-wave solutions is investigated, using a novel formulation of the free-surface (FS) boundary-value problem. This method requires the solution of a sequence of stationary Reynolds-Averaged Navier-Stokes subproblems employing t

  10. Cardiac tissue structure. Electric field interactions in polarizing the heart: 3D computer models and applications

    Science.gov (United States)

    Entcheva, Emilia

    1998-11-01

    The goal of this research is to investigate the interactions between the cardiac tissue structure and applied electric fields in producing complex polarization patterns. It is hypothesized that the response of the heart in the conditions of strong electric shocks, as those applied in defibrillation, is dominated by mechanisms involving the cardiac muscle structure perceived as a continuum. Analysis is carried out in three-dimensional models of the heart with detailed fiber architecture. Shock-induced transmembrane potentials are calculated using the bidomain model in its finite element implementation. The major new findings of this study can be summarized as follows: (1) The mechanisms of polarization due to cardiac fiber curvature and fiber rotation are elucidated in three-dimensional ellipsoidal hearts of variable geometry; (2) Results are presented showing that the axis of stimulation and the polarization axis on a whole heart level might differ significantly due to geometric and anisotropic factors; (3) Virtual electrode patterns are demonstrated numerically inside the ventricular wall in internal defibrillation conditions. The role of the tissue-bath interface in shaping the shock-induced polarization is revealed; (4) The generation of 3D phase singularity scrolls by shock-induced intramural virtual electrode patterns is proposed as evidence for a possible new mechanism for the failure to defibrillate. The results of this study emphasize the role of unequal anisotropy in the intra- and extracellular domains, as well as the salient fiber architecture characteristics, such as curvature and transmural rotation, in polarizing the myocardium. Experimental support of the above findings was actively sought and found in recent optical mapping studies using voltage-sensitive dyes. If validated in vivo, these findings would significantly enrich the prevailing concepts about the mechanisms of stimulation and defibrillation of the heart.

  11. Linearity of patient positioning detection. A phantom study of skin markers, cone beam computed tomography, and 3D ultrasound

    Energy Technology Data Exchange (ETDEWEB)

    Ballhausen, Hendrik; Hieber, Sheila; Li, Minglun; Belka, Claus; Reiner, Michael [University Hospital of LMU, Department of Radiation Oncology, Munich (Germany); Parodi, Katia [Ludwig-Maximilian-University, Department of Experimental Physics - Medical Physics, Munich (Germany)

    2015-05-01

    Three-dimensional ultrasound (3D-US) is a modality complementary to kilovoltage cone beam computed tomography (kV-CBCT) and skin markers for patient positioning detection. This study compares the linearity of evaluations based on measurements using a modern 3D-US system (Elekta Clarity {sup registered}; Elekta, Stockholm, Sweden), a kV-CBCT system (Elekta iView {sup registered}), and skin markers. An investigator deliberately displaced a multimodal phantom by up to ± 30 mm along different axes. The following data points were acquired: 27 along the lateral axis, 29 along the longitudinal axis, 27 along the vertical axis, and 27 along the space diagonal. At each of these 110 positions, the displacements according to skin' markers were recorded and scans were performed using both 3D-US and kV-CBCT. Shifts were detected by matching bony anatomy or soft tissue density to a reference planning CT in the case of kV-CBCT and for 3D-US, by matching ultrasound volume data to a reference planning volume. A consensus value was calculated from the average of the four modalities. With respect to this consensus value, the linearity (offset and regression coefficient, i.e., slope), average offset, systematic error, and random error of all four modalities were calculated for each axis. Linearity was similar for all four modalities, with regression coefficients between 0.994 and 1.012, and all offsets below 1 mm. The systematic errors of skin markers and 3D-US were higher than for kV-CBCT, but random errors were similar. In particular, 3D-US demonstrated an average offset of 0.36 mm to the right, 0.08 mm inferiorly, and 0.15 mm anteriorly; the systematic error was 0.36 mm laterally, 0.35 mm longitudinally, and 0.22 mm vertically; the random error was 0.15 mm laterally, 0.30 mm longitudinally, and 0.12 mm vertically. A total of 109 out of 110 (99 %) 3D-US measurements were within 1 mm of the consensus value on either axis. The linearity of 3D-US was no worse than that of skin

  12. Computational 3D structures of drug-targeting proteins in the 2009-H1N1 influenza A virus

    Science.gov (United States)

    Du, Qi-Shi; Wang, Shu-Qing; Huang, Ri-Bo; Chou, Kuo-Chen

    2010-01-01

    The neuraminidase (NA) and M2 proton channel of influenza virus are the drug-targeting proteins, based on which several drugs were developed. However these once powerful drugs encountered drug-resistant problem to the H5N1 and H1N1 flu. To address this problem, the computational 3D structures of NA and M2 proteins of 2009-H1N1 influenza virus were built using the molecular modeling technique and computational chemistry method. Based on the models the structure features of NA and M2 proteins were analyzed, the docking structures of drug-protein complexes were computed, and the residue mutations were annotated. The results may help to solve the drug-resistant problem and stimulate designing more effective drugs against 2009-H1N1 influenza pandemic.

  13. High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation

    Energy Technology Data Exchange (ETDEWEB)

    Peterka, Tom; Morozov, Dmitriy; Phillips, Carolyn

    2014-11-14

    Computing a Voronoi or Delaunay tessellation from a set of points is a core part of the analysis of many simulated and measured datasets: N-body simulations, molecular dynamics codes, and LIDAR point clouds are just a few examples. Such computational geometry methods are common in data analysis and visualization; but as the scale of simulations and observations surpasses billions of particles, the existing serial and shared-memory algorithms no longer suffice. A distributed-memory scalable parallel algorithm is the only feasible approach. The primary contribution of this paper is a new parallel Delaunay and Voronoi tessellation algorithm that automatically determines which neighbor points need to be exchanged among the subdomains of a spatial decomposition. Other contributions include periodic and wall boundary conditions, comparison of our method using two popular serial libraries, and application to numerous science datasets.

  14. Accurate computation of Galerkin double surface integrals in the 3-D boundary element method

    CERN Document Server

    Adelman, Ross; Duraiswami, Ramani

    2015-01-01

    Many boundary element integral equation kernels are based on the Green's functions of the Laplace and Helmholtz equations in three dimensions. These include, for example, the Laplace, Helmholtz, elasticity, Stokes, and Maxwell's equations. Integral equation formulations lead to more compact, but dense linear systems. These dense systems are often solved iteratively via Krylov subspace methods, which may be accelerated via the fast multipole method. There are advantages to Galerkin formulations for such integral equations, as they treat problems associated with kernel singularity, and lead to symmetric and better conditioned matrices. However, the Galerkin method requires each entry in the system matrix to be created via the computation of a double surface integral over one or more pairs of triangles. There are a number of semi-analytical methods to treat these integrals, which all have some issues, and are discussed in this paper. We present novel methods to compute all the integrals that arise in Galerkin fo...

  15. Computer-aided determination of occlusal contact points for dental 3-D CAD.

    Science.gov (United States)

    Maruyama, Tomoaki; Nakamura, Yasuo; Hayashi, Toyohiko; Kato, Kazumasa

    2006-05-01

    Present dental CAD systems enable us to design functional occlusal tooth surfaces which harmonize with the patient's stomatognathic function. In order to avoid occlusal interferences during tooth excursions, currently available systems usually use the patient's functional occlusal impressions for the design of occlusal contact points. Previous interfere-free design, however, has been done on a trial-and-error basis by using visual inspection. To improve this time-consuming procedure, this paper proposes a computer-aided system for assisting in the determination of the occlusal contact points by visualizing the appropriate regions of the opposing surface. The system can designate such regions from data of the opposing occlusal surfaces and their relative movements can be simulated by using a virtual articulator. Experiments for designing the crown of a lower first molar demonstrated that all contact points selected within the designated regions completely satisfied the required contact or separation during tooth excursions, confirming the effectiveness of our computer-aided procedure.

  16. 3D artificial bones for bone repair prepared by computed tomography-guided fused deposition modeling for bone repair.

    Science.gov (United States)

    Xu, Ning; Ye, Xiaojian; Wei, Daixu; Zhong, Jian; Chen, Yuyun; Xu, Guohua; He, Dannong

    2014-09-10

    The medical community has expressed significant interest in the development of new types of artificial bones that mimic natural bones. In this study, computed tomography (CT)-guided fused deposition modeling (FDM) was employed to fabricate polycaprolactone (PCL)/hydroxyapatite (HA) and PCL 3D artificial bones to mimic natural goat femurs. The in vitro mechanical properties, in vitro cell biocompatibility, and in vivo performance of the artificial bones in a long load-bearing goat femur bone segmental defect model were studied. All of the results indicate that CT-guided FDM is a simple, convenient, relatively low-cost method that is suitable for fabricating natural bonelike artificial bones. Moreover, PCL/HA 3D artificial bones prepared by CT-guided FDM have more close mechanics to natural bone, good in vitro cell biocompatibility, biodegradation ability, and appropriate in vivo new bone formation ability. Therefore, PCL/HA 3D artificial bones could be potentially be of use in the treatment of patients with clinical bone defects.

  17. EVALUATION OF THE LIVER METASTASIS BY 3D-COMPUTED TOMOGRAPHY

    OpenAIRE

    Iuliana Eva; R.C. Tiutiuca

    2005-01-01

    Abdominal spiral computed tomography is the method of choice for the diagnosis of hepatic metastasis, evaluating lesions even under 10 mm. Treatment depends of the hepatic and extrahepatic spread of disease. Therapeutical options include surgical ablation (resection, enucleation, crioablation, radiofrequency, liver transplant) or non-surgical (embolization or chemoembolization, therapeutic aproach through the hepatic artery). Precise diagnostic and evaluation of the extension of the disease...

  18. 3-D finite element computation and dynamic modal analysis on ultrasonic vibration systems

    Institute of Scientific and Technical Information of China (English)

    倪金刚; 张学仁; 聂景旭(Department of Jet Propulsion 405; Beijing University of Aeronautics and Astronautics; Beijing 100083; China)

    1996-01-01

    Stress and modal analyses are performed on an ultrasonic vibration system by means of a 3-dimensional finite element computation and dynamic modal analysis code "Algor" The system consists of an edge-cracked specimen linked elastically with one or two amplifying horns which come into resonant longitudinal vibration at 20kHz.Operating principle of the ultrasonic fatigue machines and experimental procedures for ultrasonic fatigue crack growth studies are briefly presented.

  19. Personalized mitral valve closure computation and uncertainty analysis from 3D echocardiography.

    Science.gov (United States)

    Grbic, Sasa; Easley, Thomas F; Mansi, Tommaso; Bloodworth, Charles H; Pierce, Eric L; Voigt, Ingmar; Neumann, Dominik; Krebs, Julian; Yuh, David D; Jensen, Morten O; Comaniciu, Dorin; Yoganathan, Ajit P

    2017-01-01

    Intervention planning is essential for successful Mitral Valve (MV) repair procedures. Finite-element models (FEM) of the MV could be used to achieve this goal, but the translation to the clinical domain is challenging. Many input parameters for the FEM models, such as tissue properties, are not known. In addition, only simplified MV geometry models can be extracted from non-invasive modalities such as echocardiography imaging, lacking major anatomical details such as the complex chordae topology. A traditional approach for FEM computation is to use a simplified model (also known as parachute model) of the chordae topology, which connects the papillary muscle tips to the free-edges and select basal points. Building on the existing parachute model a new and comprehensive MV model was developed that utilizes a novel chordae representation capable of approximating regional connectivity. In addition, a fully automated personalization approach was developed for the chordae rest length, removing the need for tedious manual parameter selection. Based on the MV model extracted during mid-diastole (open MV) the MV geometric configuration at peak systole (closed MV) was computed according to the FEM model. In this work the focus was placed on validating MV closure computation. The method is evaluated on ten in vitro ovine cases, where in addition to echocardiography imaging, high-resolution μCT imaging is available for accurate validation.

  20. Sentinel Lymph Node Detection by 3D Freehand Single-Photon Emission Computed Tomography in Early Stage Breast Cancer

    Directory of Open Access Journals (Sweden)

    Salih Sinan Gültekin

    2016-06-01

    Full Text Available We herein present our first experience obtained by 3D freehand single-photon emission computed tomography (SPECT (F-SPECT guidance for sentinel lymph node detection (SLND in two patients with early stage breast cancer. F-SPECT guidance was carried out using one-day protocol in one case and by the two-day protocol in the other one. SLND was performed successfully in both patients. Histopathologic evaluation showed that the excised nodes were tumor negative. Thus, patients underwent breast-conserving surgery alone.

  1. ALGEBRAIC TURBULENCE MODEL WITH MEMORY FOR COMPUTATION OF 3-D TURBULENT BOUNDARY LAYERS WITH VALIDATION

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Additional equations were found based on experiments for an algebraic turbulence model to improve the prediction of the behavior of three dimensional turbulent boundary layers by taking account of the effects of pressure gradient and the historical variation of eddy viscosity, so the model is with memory. Numerical calculation by solving boundary layer equations was carried out for the five pressure driven three dimensional turbulent boundary layers developed on flat plates, swept-wing, and prolate spheroid in symmetrical plane. Comparing the computational results with the experimental data, it is obvious that the prediction will be more accurate if the proposed closure equations are used, especially for the turbulent shear stresses.

  2. The Computational Complexity of Portal and Other 3D Video Games

    OpenAIRE

    Erik D. Demaine; Lockhart, Joshua; Lynch, Jayson

    2016-01-01

    We classify the computational complexity of the popular video games Portal and Portal 2. We isolate individual mechanics of the game and prove NP-hardness, PSPACE-completeness, or (pseudo)polynomiality depending on the specific game mechanics allowed. One of our proofs generalizes to prove NP-hardness of many other video games such as Half-Life 2, Halo, Doom, Elder Scrolls, Fallout, Grand Theft Auto, Left 4 Dead, Mass Effect, Deus Ex, Metal Gear Solid, and Resident Evil. These results build o...

  3. Computer simulation of 2-D and 3-D ion beam extraction and acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Ido, Shunji; Nakajima, Yuji [Saitama Univ., Urawa (Japan). Faculty of Engineering

    1997-03-01

    The two-dimensional code and the three-dimensional code have been developed to study the physical features of the ion beams in the extraction and acceleration stages. By using the two-dimensional code, the design of first electrode(plasma grid) is examined in regard to the beam divergence. In the computational studies by using the three-dimensional code, the axis-off model of ion beam is investigated. It is found that the deflection angle of ion beam is proportional to the gap displacement of the electrodes. (author)

  4. Computational studies of hard-body and 3-D effects in plume flows

    Science.gov (United States)

    Venkatapathy, Ethiraj; Feiereisen, William J.; Obayashi, Shigeru

    1989-01-01

    Axisymmetric and three-dimensional, multi-nozzle plume flows around generic rocket geometries are investigated with a three-dimensional Navier-Stokes solver to study the interactive effects between hard body and the plume. Time-asymptotic, laminar, ideal-gas solutions obtained with a two-factor, flux-split scheme and a diagonal, upwind scheme are presented. Computed solutions to three-dimensional, multi-nozzle problems and single-nozzle, axisymmetric problems demonstrate flow field features including three-dimensionality and hard-body effects. Geometry and three-dimensional effects are shown to be significant in multi-nozzle flows.

  5. Comparison of predicting drag methods using computational fluid dynamics in 2d/3d viscous flow

    Institute of Scientific and Technical Information of China (English)

    ZHU; ZiQiang; WANG; XiaoLu; LIU; Jie; LIU; Zhou

    2007-01-01

    As a result of the necessity of aircraft engineering design and the progress of computational fluid dynamics (CFD), techniques of accurately predicting aerodynamic drag are being increasingly explored. According to the momentum balance, the drag can be represented by an integral over a cross-flow plane (called wake integration method) at an arbitrary distance behind the configuration. A formulation to reduce the size of the wake cross plane region required for calculating the drag is developed by using cutoff parameters of vorticity and entropy. This increases the calculation accuracy and decreases the computation time required. Numerical experiments are made to obtain the threshold values of these cutoff parameters. The wake integration method is applied to predict drags of some examples including airfoil, a variety of wings and wing-body combination. Numerical results are compared with those of traditional surface integration method, showing that the predicting drag values with the wake integration method are closer to the experimental data. The results also show that drag prediction within engineering accuracy is possible by using CFD and the numerical drag optimization of complex aircraft configurations is possible, too.

  6. How computer science can help in understanding the 3D genome architecture.

    Science.gov (United States)

    Shavit, Yoli; Merelli, Ivan; Milanesi, Luciano; Lio', Pietro

    2016-09-01

    Chromosome conformation capture techniques are producing a huge amount of data about the architecture of our genome. These data can provide us with a better understanding of the events that induce critical regulations of the cellular function from small changes in the three-dimensional genome architecture. Generating a unified view of spatial, temporal, genetic and epigenetic properties poses various challenges of data analysis, visualization, integration and mining, as well as of high performance computing and big data management. Here, we describe the critical issues of this new branch of bioinformatics, oriented at the comprehension of the three-dimensional genome architecture, which we call 'Nucleome Bioinformatics', looking beyond the currently available tools and methods, and highlight yet unaddressed challenges and the potential approaches that could be applied for tackling them. Our review provides a map for researchers interested in using computer science for studying 'Nucleome Bioinformatics', to achieve a better understanding of the biological processes that occur inside the nucleus. © The Author 2015. Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.

  7. Simplified 3D model of a PWR reactor vessel using fluid dynamics code ANSYS CFX computational; Modelo simplificado 3D de la vasija de un reactor PWR mediante el codigo de dinamica de fluidos computacional ANSYS CFX

    Energy Technology Data Exchange (ETDEWEB)

    Martinez, M.; Miro, R.; Barrachina, T.; Verdu, G.

    2011-07-01

    This paper presents the results from the calculation of the steady state simulation with model of CFD (computational fluid dynamic) operating under conditions of operation at full power (Hot Full Power). Development and the CFD model results show the usefulness of these codes for calculating 3D of the variable thermohydraulics of these reactors.

  8. Fast and Precise 3D Computation of Capacitance of Parallel Narrow Beam MEMS Structures

    CERN Document Server

    Majumdar, N

    2007-01-01

    Efficient design and performance of electrically actuated MEMS devices necessitate accurate estimation of electrostatic forces on the MEMS structures. This in turn requires thorough study of the capacitance of the structures and finally the charge density distribution on the various surfaces of a device. In this work, nearly exact BEM solutions have been provided in order to estimate these properties of a parallel narrow beam structure found in MEMS devices. The effect of three-dimensionality, which is an important aspect for these structures, and associated fringe fields have been studied in detail. A reasonably large parameter space has been covered in order to follow the variation of capacitance with various geometric factors. The present results have been compared with those obtained using empirical parametrized expressions keeping in view the requirement of the speed of computation. The limitations of the empirical expressions have been pointed out and possible approaches of their improvement have been d...

  9. Users manual for CAFE-3D : a computational fluid dynamics fire code.

    Energy Technology Data Exchange (ETDEWEB)

    Khalil, Imane; Lopez, Carlos; Suo-Anttila, Ahti Jorma (Alion Science and Technology, Albuquerque, NM)

    2005-03-01

    The Container Analysis Fire Environment (CAFE) computer code has been developed to model all relevant fire physics for predicting the thermal response of massive objects engulfed in large fires. It provides realistic fire thermal boundary conditions for use in design of radioactive material packages and in risk-based transportation studies. The CAFE code can be coupled to commercial finite-element codes such as MSC PATRAN/THERMAL and ANSYS. This coupled system of codes can be used to determine the internal thermal response of finite element models of packages to a range of fire environments. This document is a user manual describing how to use the three-dimensional version of CAFE, as well as a description of CAFE input and output parameters. Since this is a user manual, only a brief theoretical description of the equations and physical models is included.

  10. On a 3-D singularity element for computation of combined mode stress intensities

    Science.gov (United States)

    Atluri, S. N.; Kathiresan, K.

    1976-01-01

    A special three-dimensional singularity element is developed for the computation of combined modes 1, 2, and 3 stress intensity factors, which vary along an arbitrarily curved crack front in three dimensional linear elastic fracture problems. The finite element method is based on a displacement-hybrid finite element model, based on a modified variational principle of potential energy, with arbitrary element interior displacements, interelement boundary displacements, and element boundary tractions as variables. The special crack-front element used in this analysis contains the square root singularity in strains and stresses, where the stress-intensity factors K(1), K(2), and K(3) are quadratically variable along the crack front and are solved directly along with the unknown nodal displacements.

  11. Correlation of 3D Shift and 3D Tilt of the Patella in Patients With Recurrent Dislocation of the Patella and Healthy Volunteers: An In Vivo Analysis Based on 3-Dimensional Computer Models.

    Science.gov (United States)

    Yamada, Yuzo; Toritsuka, Yukiyoshi; Nakamura, Norimasa; Horibe, Shuji; Sugamoto, Kazuomi; Yoshikawa, Hideki; Shino, Konsei

    2017-08-01

    The concepts of lateral deviation and lateral inclination of the patella, characterized as shift and tilt, have been applied in combination to evaluate patellar malalignment in patients with patellar dislocation. It is not reasonable, however, to describe the 3-dimensional (3D) positional relation between the patella and the femur according to measurements made on 2-dimensional (2D) images. The current study sought to clarify the relation between lateral deviation and inclination of the patella in patients with recurrent dislocation of the patella (RDP) by redefining them via 3D computer models as 3D shift and 3D tilt. Descriptive laboratory study. Altogether, 60 knees from 56 patients with RDP and 15 knees from 10 healthy volunteers were evaluated. 3D shift and tilt of the patella were analyzed with 3D computer models created by magnetic resonance imaging scans obtained at 10° intervals of knee flexion (0°-50°). 3D shift was defined as the spatial distance between the patellar reference point and the midsagittal plane of the femur; it is expressed as a percentage of the interepicondylar width. 3D tilt was defined as the spatial angle between the patellar reference plane and the transepicondylar axis. Correlations between the 2 parameters were assessed with the Pearson correlation coefficient. The patients' mean Pearson correlation coefficient was 0.895 ± 0.186 (range, -0.073 to 0.997; median, 0.965). In all, 56 knees (93%) had coefficients >0.7 (strong correlation); 1 knee (2%), >0.4 (moderate correlation); 2 knees (3%), >0.2 (weak correlation); and 1 knee (2%), correlation). The mean correlation coefficient of the healthy volunteers was 0.645 ± 0.448 (range, -0.445 to 0.982; median, 0.834). A statistically significant difference was found in the distribution of the correlation coefficients between the patients and the healthy volunteers ( P = .0034). When distribution of the correlation coefficients obtained by the 3D analyses was compared with that by the 2

  12. A Computationally-Efficient Kinetic Approach for Gas/Particle Mass Transfer Treatments: Development, Testing, and 3-D Application

    Science.gov (United States)

    Hu, X.; Zhang, Y.

    2007-05-01

    The Weather Research and Forecast/Chemistry Model (WRF/Chem) that simulates chemistry simultaneously with meteorology has recently been developed for real-time forecasting by the U.S. National Center for Atmospheric Research (NCAR) and National Oceanic & Atmospheric Administration (NOAA). As one of the six air quality models, WRF/Chem with a modal aerosol module has been applied for ozone and PM2.5 ensemble forecasts over eastern North America as part of the 2004 New England Air Quality Study (NEAQS) program (NEAQS-2004). Significant differences exist in the partitioning of volatile species (e.g., ammonium and nitrate) simulated by the six models. Model biases are partially attributed to the equilibrium assumption used in the gas/particles mass transfer approach in some models. Development of a more accurate, yet computationally- efficient gas/particle mass transfer approach for three-dimensional (3-D) applications, in particular, real-time forecasting, is therefore warranted. Model of Aerosol Dynamics, Reaction, Ionization, and Dissolution (MADRID) has been implemented into WRF/Chem (referred to as WRF/Chem-MADRID). WRF/Chem-MADRID offers three gas/particle partitioning treatments: equilibrium, kinetic, and hybrid approaches. The equilibrium approach is computationally-efficient and commonly used in 3-D air quality models but less accurate under certain conditions (e.g., in the presence of coarse, reactive particles such as PM containing sea-salts in the coastal areas). The kinetic approach is accurate but computationally-expensive, limiting its 3-D applications. The hybrid approach attempts to provide a compromise between merits and drawbacks of the two approaches by treating fine PM (typically MADRID has recently been developed for 3-D applications based on an Analytical Predictor of Condensation (referred to as kinetic/APC). In this study, WRF/Chem-MADRID with the kinetic/APC approach will be further evaluated along with the equilibrium and hybrid approaches

  13. Micro-computed tomography image-based evaluation of 3D anisotropy degree of polymer scaffolds.

    Science.gov (United States)

    Pérez-Ramírez, Ursula; López-Orive, Jesús Javier; Arana, Estanislao; Salmerón-Sánchez, Manuel; Moratal, David

    2015-01-01

    Anisotropy is one of the most meaningful determinants of biomechanical behaviour. This study employs micro-computed tomography (μCT) and image techniques for analysing the anisotropy of regenerative medicine polymer scaffolds. For this purpose, three three-dimensional anisotropy evaluation image methods were used: ellipsoid of inertia (EI), mean intercept length (MIL) and tensor scale (t-scale). These were applied to three patterns (a sphere, a cube and a right prism) and to two polymer scaffold topologies (cylindrical orthogonal pore mesh and spherical pores). For the patterns, the three methods provided good results. Regarding the scaffolds, EI mistook both topologies (0.0158, [-0.5683; 0.6001]; mean difference and 95% confidence interval), and MIL showed no significant differences (0.3509, [0.0656; 0.6362]). T-scale is the preferable method because it gave the best capability (0.3441, [0.1779; 0.5102]) to differentiate both topologies. This methodology results in the development of non-destructive tools to engineer biomimetic scaffolds, incorporating anisotropy as a fundamental property to be mimicked from the original tissue and permitting its assessment by means of μCT image analysis.

  14. Effects of Electrode Position on Spatiotemporal Auditory Nerve Fiber Responses: A 3D Computational Model Study

    Directory of Open Access Journals (Sweden)

    Soojin Kang

    2015-01-01

    Full Text Available A cochlear implant (CI is an auditory prosthesis that enables hearing by providing electrical stimuli through an electrode array. It has been previously established that the electrode position can influence CI performance. Thus, electrode position should be considered in order to achieve better CI results. This paper describes how the electrode position influences the auditory nerve fiber (ANF response to either a single pulse or low- (250 pulses/s and high-rate (5,000 pulses/s pulse-trains using a computational model. The field potential in the cochlea was calculated using a three-dimensional finite-element model, and the ANF response was simulated using a biophysical ANF model. The effects were evaluated in terms of the dynamic range, stochasticity, and spike excitation pattern. The relative spread, threshold, jitter, and initiated node were analyzed for single-pulse response; and the dynamic range, threshold, initiated node, and interspike interval were analyzed for pulse-train stimuli responses. Electrode position was found to significantly affect the spatiotemporal pattern of the ANF response, and this effect was significantly dependent on the stimulus rate. We believe that these modeling results can provide guidance regarding perimodiolar and lateral insertion of CIs in clinical settings and help understand CI performance.

  15. Complex anatomy surrounding the left atrial posterior wall: analysis with 3D computed tomography.

    Science.gov (United States)

    Maeda, Shingo; Iesaka, Yoshito; Uno, Kikuya; Otomo, Kiyoshi; Nagata, Yasutoshi; Suzuki, Kenji; Hachiya, Hitoshi; Goya, Masahiko; Takahashi, Atsushi; Fujiwara, Hideomi; Hiraoka, Masayasu; Isobe, Mitsuaki

    2012-01-01

    Few studies have explored the topographic anatomy of the esophagus, posterior wall of the left atrium (LA), or fat pads using multidetector computed tomography (MDCT) to prevent the risk of esophageal injury during atrial fibrillation (AF) ablation. MDCT was performed in 110 consecutive patients with paroxysmal or persistent AF before the ablation procedure to understand the anatomic relationship of the esophagus. Two major types of esophagus routes were demonstrated. Leftward (type A) and rightward (type B) routes were found in 90 and 10% of the patients, respectively. A type A route had a larger mean size of the LA than type B. The fat pad was identifiable at the level of the inferior pulmonary vein in 91% of the patients without any predominance of either type. The thickness of the fat pad was thinner in the patients with a dilated LA (>42 mm) than in those with a normal LA size (≤42 mm) (p = 0.01). The results demonstrated that the majority of cases had a leftward route of the esophagus. There was a close association between the LA dilatation and fat pad thinning. With a dilated LA, the esophagus may become easily susceptible to direct thermal injury during AF ablation. Visualization of the anatomic relationship may contribute to the prevention of the potential risk of an esophageal injury.

  16. 3-D computational method of wave loads on turret moored FPSO tankers

    Institute of Scientific and Technical Information of China (English)

    REN Hui-long; ZHANG Hai-bin; DAI Yu-zhi; SONG Jing-zheng

    2003-01-01

    A three-dimensional method of calculating wave loads of turret moored FPSO (Floating Production Storage and Offloading) tankers is presented. The linearized restoring forces acting on the ship hull by the mooring system are calculated according to the catenary theory, which are expressed as the function of linear stiffness coefficients and the displacements of the upper ends of mooring chains. The hydrodynamic coefficients of the ship are calculated by the three-dimensional potential flow theory of the linear hydrodynamic problem for ships with a low forward speed. The equations of ship motions are established with the effect of the restoring forces from the mooring system included as linear stiffness coefficients. The equations of motions are solved in frequency domain, and the responses of wave-induced motions and loads on the ship can be obtained. A computer program based on this method has been developed,and some calculation examples are illustrated. Analysis results show that the method can give satisfying prediction of wave loads.

  17. Scanning laser optical computed tomography system for large volume 3D dosimetry

    Science.gov (United States)

    Dekker, Kurtis H.; Battista, Jerry J.; Jordan, Kevin J.

    2017-04-01

    Stray light causes artifacts in optical computed tomography (CT) that negatively affect the accuracy of radiation dosimetry in gels or solids. Scatter effects are exacerbated by a large dosimeter volume, which is desirable for direct verification of modern radiotherapy treatment plans such as multiple-isocenter radiosurgery. The goal in this study was to design and characterize an optical CT system that achieves high accuracy primary transmission measurements through effective stray light rejection, while maintaining sufficient scan speed for practical application. We present an optical imaging platform that uses a galvanometer mirror for horizontal scanning, and a translation stage for vertical movement of a laser beam and small area detector for minimal stray light production and acceptance. This is coupled with a custom lens-shaped optical CT aquarium for parallel ray sampling of projections. The scanner images 15 cm diameter, 12 cm height cylindrical volumes at 0.33 mm resolution in approximately 30 min. Attenuation coefficients reconstructed from CT scans agreed with independent cuvette measurements within 2% for both absorbing and scattering solutions as well as small 1.25 cm diameter absorbing phantoms placed within a large, scattering medium that mimics gel. Excellent linearity between the optical CT scanner and the independent measurement was observed for solutions with between 90% and 2% transmission. These results indicate that the scanner should achieve highly accurate dosimetry of large volume dosimeters in a reasonable timeframe for clinical application to radiotherapy dose verification procedures.

  18. Scanning laser optical computed tomography system for large volume 3D dosimetry.

    Science.gov (United States)

    Dekker, Kurtis H; Battista, Jerry J; Jordan, Kevin J

    2017-04-07

    Stray light causes artifacts in optical computed tomography (CT) that negatively affect the accuracy of radiation dosimetry in gels or solids. Scatter effects are exacerbated by a large dosimeter volume, which is desirable for direct verification of modern radiotherapy treatment plans such as multiple-isocenter radiosurgery. The goal in this study was to design and characterize an optical CT system that achieves high accuracy primary transmission measurements through effective stray light rejection, while maintaining sufficient scan speed for practical application. We present an optical imaging platform that uses a galvanometer mirror for horizontal scanning, and a translation stage for vertical movement of a laser beam and small area detector for minimal stray light production and acceptance. This is coupled with a custom lens-shaped optical CT aquarium for parallel ray sampling of projections. The scanner images 15 cm diameter, 12 cm height cylindrical volumes at 0.33 mm resolution in approximately 30 min. Attenuation coefficients reconstructed from CT scans agreed with independent cuvette measurements within 2% for both absorbing and scattering solutions as well as small 1.25 cm diameter absorbing phantoms placed within a large, scattering medium that mimics gel. Excellent linearity between the optical CT scanner and the independent measurement was observed for solutions with between 90% and 2% transmission. These results indicate that the scanner should achieve highly accurate dosimetry of large volume dosimeters in a reasonable timeframe for clinical application to radiotherapy dose verification procedures.

  19. Computer Tomography 3-D Imaging of the Metal Deformation Flow Path in Friction Stir Welding

    Science.gov (United States)

    Schneider, Judy; Beshears, Ronald; Nunes, Arthur C., Jr.

    2004-01-01

    In friction stir welding, a rotating threaded pin tool is inserted into a weld seam and literally stirs the edges of the seam together. This solid-state technique has been successfully used in the joining of materials that are difficult to fusion weld such as aluminum alloys. To determine optimal processing parameters for producing a defect free weld, a better understanding of the resulting metal deformation flow path is required. Marker studies are the principal method of studying the metal deformation flow path around the FSW pin tool. In our study, we have used computed tomography (CT) scans to reveal the flow pattern of a lead wire embedded in a FSW weld seam. At the welding temperature of aluminum, the lead becomes molten and thus tracks the aluminum deformation flow paths in a unique 3-dimensional manner. CT scanning is a convenient and comprehensive way of collecting and displaying tracer data. It marks an advance over previous more tedious and ambiguous radiographic/metallographic data collection methods.

  20. Quantification of arthritic bone degradation by analysis of 3D micro-computed tomography data

    Science.gov (United States)

    Svensson, Carl-Magnus; Hoffmann, Bianca; Irmler, Ingo M.; Straßburger, Maria; Figge, Marc Thilo; Saluz, Hans Peter

    2017-01-01

    The use of animal models of arthritis is a key component in the evaluation of therapeutic strategies against the human disease rheumatoid arthritis (RA). Here we present quantitative measurements of bone degradation characterised by the cortical bone profile using glucose-6-phosphate isomerase (G6PI) induced arthritis. We applied micro-computed tomography (μCT) during three arthritis experiments and one control experiment to image the metatarsals of the hind paws and to investigate the effect of experimental arthritis on their cortical bone profile. For measurements of the cortical profile we automatically identified slices that are orthogonal to individual metatarsals, thereby making the measurements independent of animal placement in the scanner. We measured the average cortical thickness index (CTI) of the metatarsals, as well as the thickness changes along the metatarsal. In this study we introduced the cortical thickness gradient (CTG) as a new measure and we investigated how arthritis affects this measure. We found that in general both CTI and CTG are able to quantify arthritic progression, whilst CTG was found to be the more sensitive measure. PMID:28290525

  1. Microscopic description of fission dynamics: Toward a 3D computation of the time dependent GCM equation

    Directory of Open Access Journals (Sweden)

    Regnier D.

    2017-01-01

    Full Text Available Accurate knowledge of fission fragment yields is an essential ingredient of numerous applications ranging from the formation of elements in the r-process to fuel cycle optimization in nuclear energy. The need for a predictive theory applicable where no data is available, together with the variety of potential applications, is an incentive to develop a fully microscopic approach to fission dynamics. One of the most promising theoretical frameworks is the time dependent generator coordinate method (TDGCM applied under the Gaussian overlap approximation (GOA. However, the computational cost of this method makes it difficult to perform calculations with more than two collective degree of freedom. Meanwhile, it is well-known from both semi-phenomenological and fully microscopic approaches that at least four or five dimensions may play a role in the dynamics of fission. To overcome this limitation, we develop the code FELIX aiming to solve the TDGCM+GOA equation for an arbitrary number of collective variables. In this talk, we report the recent progress toward this enriched description of fission dynamics. We will briefly present the numerical methods adopted as well as the status of the latest version of FELIX. Finally, we will discuss fragments yields obtained within this approach for the low energy fission of major actinides.

  2. Microscopic description of fission dynamics: Toward a 3D computation of the time dependent GCM equation

    Science.gov (United States)

    Regnier, D.; Dubray, N.; Schunck, N.; Verrière, M.

    2017-09-01

    Accurate knowledge of fission fragment yields is an essential ingredient of numerous applications ranging from the formation of elements in the r-process to fuel cycle optimization in nuclear energy. The need for a predictive theory applicable where no data is available, together with the variety of potential applications, is an incentive to develop a fully microscopic approach to fission dynamics. One of the most promising theoretical frameworks is the time dependent generator coordinate method (TDGCM) applied under the Gaussian overlap approximation (GOA). However, the computational cost of this method makes it difficult to perform calculations with more than two collective degree of freedom. Meanwhile, it is well-known from both semi-phenomenological and fully microscopic approaches that at least four or five dimensions may play a role in the dynamics of fission. To overcome this limitation, we develop the code FELIX aiming to solve the TDGCM+GOA equation for an arbitrary number of collective variables. In this talk, we report the recent progress toward this enriched description of fission dynamics. We will briefly present the numerical methods adopted as well as the status of the latest version of FELIX. Finally, we will discuss fragments yields obtained within this approach for the low energy fission of major actinides.

  3. Voxelization Algorithms for Geospatial Applications: Computational methods for voxelating spatial datasets of 3D city models containing 3D surface, curve and point data models

    NARCIS (Netherlands)

    Nourian Ghadikolaee, P.; Goncalves, R.; Zlatanova, S.; Arroyo Ohori, G.A.K.; Vu Vo, A.

    2016-01-01

    Voxel representations have been used for years in scientific computation and medical imaging. The main focus of our research is to provide easy access to methods for making large-scale voxel models of built environment for environmental modelling studies while ensuring they are spatially correct, me

  4. Evaluation of 3D Printer Accuracy in Producing Fractal Structure.

    Science.gov (United States)

    Kikegawa, Kana; Takamatsu, Kyuuichirou; Kawakami, Masaru; Furukawa, Hidemitsu; Mayama, Hiroyuki; Nonomura, Yoshimune

    2017-01-01

    Hierarchical structures, also known as fractal structures, exhibit advantageous material properties, such as water- and oil-repellency as well as other useful optical characteristics, owing to its self-similarity. Various methods have been developed for producing hierarchical geometrical structures. Recently, fractal structures have been manufactured using a 3D printing technique that involves computer-aided design data. In this study, we confirmed the accuracy of geometrical structures when Koch curve-like fractal structures with zero to three generations were printed using a 3D printer. The fractal dimension was analyzed using a box-counting method. This analysis indicated that the fractal dimension of the third generation hierarchical structure was approximately the same as that of the ideal Koch curve. These findings demonstrate that the design and production of fractal structures can be controlled using a 3D printer. Although the interior angle deviated from the ideal value, the side length could be precisely controlled.

  5. Effects of computing parameters and measurement locations on the estimation of 3D NPS in non-stationary MDCT images.

    Science.gov (United States)

    Miéville, Frédéric A; Bolard, Gregory; Bulling, Shelley; Gudinchet, François; Bochud, François O; Verdun, François R

    2013-11-01

    The goal of this study was to investigate the impact of computing parameters and the location of volumes of interest (VOI) on the calculation of 3D noise power spectrum (NPS) in order to determine an optimal set of computing parameters and propose a robust method for evaluating the noise properties of imaging systems. Noise stationarity in noise volumes acquired with a water phantom on a 128-MDCT and a 320-MDCT scanner were analyzed in the spatial domain in order to define locally stationary VOIs. The influence of the computing parameters in the 3D NPS measurement: the sampling distances bx,y,z and the VOI lengths Lx,y,z, the number of VOIs NVOI and the structured noise were investigated to minimize measurement errors. The effect of the VOI locations on the NPS was also investigated. Results showed that the noise (standard deviation) varies more in the r-direction (phantom radius) than z-direction plane. A 25 × 25 × 40 mm(3) VOI associated with DFOV = 200 mm (Lx,y,z = 64, bx,y = 0.391 mm with 512 × 512 matrix) and a first-order detrending method to reduce structured noise led to an accurate NPS estimation. NPS estimated from off centered small VOIs had a directional dependency contrary to NPS obtained from large VOIs located in the center of the volume or from small VOIs located on a concentric circle. This showed that the VOI size and location play a major role in the determination of NPS when images are not stationary. This study emphasizes the need for consistent measurement methods to assess and compare image quality in CT.

  6. Multi-granularity reconstruction of 3D calamity emergency situations based on visual scale space hierarchical clustering%基于VSSHC算法的灾害应急多粒度三维态势重构

    Institute of Scientific and Technical Information of China (English)

    于海心; 陈杰; 张娟

    2012-01-01

    针对现有灾害应急态势系统的三维地貌实时更新和态势多粒度显示的技术瓶颈,研究并设计了应急三维态势重构系统(3D-ESRS),该系统可进行实时三维地貌更新和多粒度显示态势内容.分析了3D-ESRS的需求和功能,设计了3D-ESRS的基于多智能体(MAS)的系统框架结构,研究了3D-ESRS系统更新地貌和多粒度显示原理与工作流程,构建了基于视觉尺度空间分层聚类(VSSHC)算法的多尺度分类模型.以堰塞湖为例,多粒度显示了水面升高过程,该实验结果表明3D-ESRS与传统基于GIS平台的态势系统相比,可以实时进行三维地貌场景更新,并对场景进行多粒度显示.%A calamity-oriented 3D emergency situation reconstruction system (3D-ESRS) was studied, and its architecture was designed using the multi-agent technique.Moreover, an approach to multi-granularity reconstruction of 3D calamity emergency situations based on the visual scale space hierarchical clustering ( VSSHC) algorithm was proposed for calamity emergency-decision supporting systems to make them realize the real-time presentation of dynamic 3D calamity situations.A simulation platform based on high level architecture (HLA) was established to verify this approach.The simulation results illustrate that this approach is applicable to emergency-decision supporting systems, and compared to the traditional situation display system this 3D-ESRS has the superiority in reconstructing real-time 3D scenario models.

  7. Petrophysical analysis of limestone rocks by nuclear logging and 3D high-resolution X-ray computed microtomography

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, M.F.S. [Nuclear Instrumentation Laboratory, COPPE-PEN, UFRJ, P.O. Box 68509, 21941-972 Rio de Janeiro, RJ (Brazil); Lima, I., E-mail: inaya@lin.ufrj.br [Nuclear Instrumentation Laboratory, COPPE-PEN, UFRJ, P.O. Box 68509, 21941-972 Rio de Janeiro, RJ (Brazil); Department of Mechanical Engineering and Energy, IPRJ-UERJ, Nova Friburgo, RJ (Brazil); Ferrucio, P.L.; Abreu, C.J.; Borghi, L. [Geology Department, Geosciences Institute, Rio de Janeiro Federal University, Rio de Janeiro, RJ (Brazil); Lopes, R.T. [Nuclear Instrumentation Laboratory, COPPE-PEN, UFRJ, P.O. Box 68509, 21941-972 Rio de Janeiro, RJ (Brazil)

    2011-10-01

    This study presents the pore-space system analysis of the 2-ITAB-1-RJ well cores, which were drilled in the Sao Jose do Itaborai Basin, in the state of Rio de Janeiro, Brasil. The analysis presented herein has been developed based on two techniques: nuclear logging and 3D high-resolution X-ray computed microtomography. Nuclear logging has been proven to be the technique that provides better quality and more quantitative information about the porosity using radioactive sources. The Density Gamma Probe and the Neutron Sonde used in this work provide qualitative information about bulk density variations and compensated porosity of the geological formation. The samples obtained from the well cores were analyzed by microtomography. The use of this technique in sedimentary rocks allows quantitative evaluation of pore system and generates high-resolution 3D images ({approx}microns order). The images and data obtained by microtomography were integrated with the response obtained by nuclear logging. The results obtained by these two techniques allow the understanding of the pore-size distribution and connectivity, as well as the porosity values. Both techniques are important and they complement each other.

  8. X-Ray Computed Tomography Analysis of Sajau Coal, Berau Basin, Indonesia: 3D Imaging of Cleat and Microcleat Characteristics

    Directory of Open Access Journals (Sweden)

    Ahmad Helman Hamdani

    2015-01-01

    Full Text Available The Pliocene Sajau coals of the Berau Basin area have a moderately to highly developed cleat system. Mostly the cleat fractures are well developed in both bright and dull bands, and these cleats are generally inclined or perpendicular to the bedding planes of the seam. The presence of cleat networks/fractures in coal seam is the important point in coalbed methane prospect. The 3D X-ray computed tomography (CT technique was performed to identify cleats characteristics in the Sajau coal seams, such as the direction of coal cleats, geometry of cleat, and cleats mineralization. By CT scan imaging technique two different types of natural fractures observed in Sajau coals have been identified, that is, face cleats and butt cleats. This technique also identified the direction of face cleats and butt cleats as shown in the resulting 3D images. Based on the images, face cleats show a NNE-SSW direction while butt cleats have a NW-SE direction. The crosscutting relationship indicated that NNE-SSW cleats were formed earlier than NW-SE cleats. The procedure also identified the types of minerals that filled the cleats apertures. Based on their density, the minerals are categorized as follows: very high density minerals (pyrite, high density minerals (anastase, and low density minerals (kaolinite, calcite were identified filling the cleats aperture.

  9. Computational Fluid Dynamic Analyses for the High-Lift Common Research Model Using the USM3D and FUN3D Flow Solvers

    Science.gov (United States)

    Rivers, Melissa; Hunter, Craig; Vatsa, Veer

    2017-01-01

    Two Navier-Stokes codes were used to compute flow over the High-Lift Common Research Model (HL-CRM) in preparation for a wind tunnel test to be performed at the NASA Langley Research Center 14-by-22-Foot Subsonic Tunnel in fiscal year 2018. Both flight and wind tunnel conditions were simulated by the two codes at set Mach numbers and Reynolds numbers over a full angle-of-attack range for three configurations: cruise, landing and takeoff. Force curves, drag polars and surface pressure contour comparisons are shown for the two codes. The lift and drag curves compare well for the cruise configuration up to 10deg angle of attack but not as well for the other two configurations. The drag polars compare reasonably well for all three configurations. The surface pressure contours compare well for some of the conditions modeled but not as well for others.

  10. Steady-State VEP-Based Brain-Computer Interface Control in an Immersive 3D Gaming Environment

    Directory of Open Access Journals (Sweden)

    Burke R

    2005-01-01

    Full Text Available This paper presents the application of an effective EEG-based brain-computer interface design for binary control in a visually elaborate immersive 3D game. The BCI uses the steady-state visual evoked potential (SSVEP generated in response to phase-reversing checkerboard patterns. Two power-spectrum estimation methods were employed for feature extraction in a series of offline classification tests. Both methods were also implemented during real-time game play. The performance of the BCI was found to be robust to distracting visual stimulation in the game and relatively consistent across six subjects, with 41 of 48 games successfully completed. For the best performing feature extraction method, the average real-time control accuracy across subjects was 89%. The feasibility of obtaining reliable control in such a visually rich environment using SSVEPs is thus demonstrated and the impact of this result is discussed.

  11. Steady-State VEP-Based Brain-Computer Interface Control in an Immersive 3D Gaming Environment

    Science.gov (United States)

    Lalor, E. C.; Kelly, S. P.; Finucane, C.; Burke, R.; Smith, R.; Reilly, R. B.; McDarby, G.

    2005-12-01

    This paper presents the application of an effective EEG-based brain-computer interface design for binary control in a visually elaborate immersive 3D game. The BCI uses the steady-state visual evoked potential (SSVEP) generated in response to phase-reversing checkerboard patterns. Two power-spectrum estimation methods were employed for feature extraction in a series of offline classification tests. Both methods were also implemented during real-time game play. The performance of the BCI was found to be robust to distracting visual stimulation in the game and relatively consistent across six subjects, with 41 of 48 games successfully completed. For the best performing feature extraction method, the average real-time control accuracy across subjects was 89%. The feasibility of obtaining reliable control in such a visually rich environment using SSVEPs is thus demonstrated and the impact of this result is discussed.

  12. Numerical study for the calculation of computer-generated hologram in color holographic 3D projection enabled by modified wavefront recording plane method

    Science.gov (United States)

    Chang, Chenliang; Qi, Yijun; Wu, Jun; Yuan, Caojin; Nie, Shouping; Xia, Jun

    2017-03-01

    A method of calculating computer-generated hologram (CGH) for color holographic 3D projection is proposed. A color 3D object is decomposed into red, green and blue components. For each color component, a virtual wavefront recording plane (WRP) is established which is nonuniformly sampled according to the depth map of the 3D object. The hologram of each color component is calculated from the nonuniform sampled WRP using the shifted Fresnel diffraction algorithm. Finally three holograms of RGB components are encoded into one single CGH based on the multiplexing encoding method. The computational cost of CGH generation is reduced by converting diffraction calculation from huge 3D voxels to three 2D planar images. Numerical experimental results show that the CGH generated by our method is capable to project zoomable color 3D object with clear quality.

  13. Voxelization algorithms for geospatial applications: Computational methods for voxelating spatial datasets of 3D city models containing 3D surface, curve and point data models.

    Science.gov (United States)

    Nourian, Pirouz; Gonçalves, Romulo; Zlatanova, Sisi; Ohori, Ken Arroyo; Vu Vo, Anh

    2016-01-01

    Voxel representations have been used for years in scientific computation and medical imaging. The main focus of our research is to provide easy access to methods for making large-scale voxel models of built environment for environmental modelling studies while ensuring they are spatially correct, meaning they correctly represent topological and semantic relations among objects. In this article, we present algorithms that generate voxels (volumetric pixels) out of point cloud, curve, or surface objects. The algorithms for voxelization of surfaces and curves are a customization of the topological voxelization approach [1]; we additionally provide an extension of this method for voxelization of point clouds. The developed software has the following advantages:•It provides easy management of connectivity levels in the resulting voxels.•It is not dependant on any external library except for primitive types and constructs; therefore, it is easy to integrate them in any application.•One of the algorithms is implemented in C++ and C for platform independence and efficiency.

  14. Morphologically tuned 3D/1D rutile TiO2 hierarchical hybrid microarchitectures engineered by one-step surfactant free hydrothermal method

    Science.gov (United States)

    Maria John, Maria Angelin Sinthiya; Ramamurthi, K.; Sethuraman, K.; Ramesh Babu, R.

    2017-05-01

    Present investigation reports on the surfactant free hydrothermal synthesize of the morphologically tuned hierarchical hybrid rutile titanium oxide (TiO2) microarchitectures showing three dimensional microflower structures and cook pine tree like structures on the one dimensional nanorods formed over TiO2 seed layer coated glass substrates by tuning growth temperature. TiO2 seed layer of ∼100 nm thick was coated on the glass substrates employing sol-gel spin coating method and then rutile TiO2 microarchitectures were synthesized on the TiO2 seed layer by one-step surfactant free hydrothermal method. Deposited samples were characterized by X-ray diffraction, scanning electron microscopy, energy dispersive spectroscopy, UV-vis spectroscopy and photoluminescence spectroscopy techniques. Influence of the growth temperature on the crystallinity, morphology and optical properties along with the growth mechanism to achieve hierarchical microarchitectures was investigated. Present work revealed that the structural, morphological and optical properties of the TiO2 hierarchical microarchitectures strongly depend on the growth temperature. Further we proposed a model for the cause to effect possible morphological changes of rutile TiO2 microarchitectures as a function of growth temperatures on the TiO2 seeded glass substrates.

  15. Relative flattening between velvet and matte 3D shapes: Evidence for similar shape-from-shading computations

    NARCIS (Netherlands)

    Wijntjes, W.A.; Doerschner, K.; Kucukoglu, G.; Pont, S.C.

    2011-01-01

    Among other cues, the visual system uses shading to infer the 3D shape of objects. The shading pattern depends on the illumination and reflectance properties (BRDF). In this study, we compared 3D shape perception between identical shapes with different BRDFs. The stimuli were photographed 3D printed

  16. 3D exemplar-based random walks for tooth segmentation from cone-beam computed tomography images.

    Science.gov (United States)

    Pei, Yuru; Ai, Xingsheng; Zha, Hongbin; Xu, Tianmin; Ma, Gengyu

    2016-09-01

    Tooth segmentation is an essential step in acquiring patient-specific dental geometries from cone-beam computed tomography (CBCT) images. Tooth segmentation from CBCT images is still a challenging task considering the comparatively low image quality caused by the limited radiation dose, as well as structural ambiguities from intercuspation and nearby alveolar bones. The goal of this paper is to present and discuss the latest accomplishments in semisupervised tooth segmentation with adaptive 3D shape constraints. The authors propose a 3D exemplar-based random walk method of tooth segmentation from CBCT images. The proposed method integrates semisupervised label propagation and regularization by 3D exemplar registration. To begin with, the pure random walk method is to get an initial segmentation of the teeth, which tends to be erroneous because of the structural ambiguity of CBCT images. And then, as an iterative refinement, the authors conduct a regularization by using 3D exemplar registration, as well as label propagation by random walks with soft constraints, to improve the tooth segmentation. In the first stage of the iteration, 3D exemplars with well-defined topologies are adapted to fit the tooth contours, which are obtained from the random walks based segmentation. The soft constraints on voxel labeling are defined by shape-based foreground dentine probability acquired by the exemplar registration, as well as the appearance-based probability from a support vector machine (SVM) classifier. In the second stage, the labels of the volume-of-interest (VOI) are updated by the random walks with soft constraints. The two stages are optimized iteratively. Instead of the one-shot label propagation in the VOI, an iterative refinement process can achieve a reliable tooth segmentation by virtue of exemplar-based random walks with adaptive soft constraints. The proposed method was applied for tooth segmentation of twenty clinically captured CBCT images. Three metrics

  17. 3D hierarchical MnO2 nanorod/welded Ag-nanowire-network composites for high-performance supercapacitor electrodes.

    Science.gov (United States)

    Qiao, Zhensong; Yang, Xiaopeng; Yang, Shuhua; Zhang, Liqiang; Cao, Bingqiang

    2016-06-28

    3D MnO2 nanorod/welded Ag-nanowire-network supercapacitor electrodes were prepared. Welding treatment of the Ag nanowire-network leads to low resistance and long lifetime. Galvanostatic charge/discharge (GCD) induces an ever-lasting morphology changing from flower-like to honeycomb-like for MnO2, which manifests as increasing specific capacitance to 663.4 F g(-1) after 7000 GCD cycles.

  18. Computational modeling of pitching cylinder-type ocean wave energy converters using 3D MPI-parallel simulations

    Science.gov (United States)

    Freniere, Cole; Pathak, Ashish; Raessi, Mehdi

    2016-11-01

    Ocean Wave Energy Converters (WECs) are devices that convert energy from ocean waves into electricity. To aid in the design of WECs, an advanced computational framework has been developed which has advantages over conventional methods. The computational framework simulates the performance of WECs in a virtual wave tank by solving the full Navier-Stokes equations in 3D, capturing the fluid-structure interaction, nonlinear and viscous effects. In this work, we present simulations of the performance of pitching cylinder-type WECs and compare against experimental data. WECs are simulated at both model and full scales. The results are used to determine the role of the Keulegan-Carpenter (KC) number. The KC number is representative of viscous drag behavior on a bluff body in an oscillating flow, and is considered an important indicator of the dynamics of a WEC. Studying the effects of the KC number is important for determining the validity of the Froude scaling and the inviscid potential flow theory, which are heavily relied on in the conventional approaches to modeling WECs. Support from the National Science Foundation is gratefully acknowledged.

  19. Modeling warm dense matter experiments using the 3D ALE-AMR code and the move toward exascale computing

    Directory of Open Access Journals (Sweden)

    Koniges Alice

    2013-11-01

    Full Text Available The Neutralized Drift Compression Experiment II (NDCX II is an induction accelerator planned for initial commissioning in 2012. The final design calls for a 3 MeV, Li+ ion beam, delivered in a bunch with characteristic pulse duration of 1 ns, and transverse dimension of order 1 mm. The NDCX II will be used in studies of material in the warm dense matter (WDM regime, and ion beam/hydrodynamic coupling experiments relevant to heavy ion based inertial fusion energy. We discuss recent efforts to adapt the 3D ALE-AMR code to model WDM experiments on NDCX II. The code, which combines Arbitrary Lagrangian Eulerian (ALE hydrodynamics with Adaptive Mesh Refinement (AMR, has physics models that include ion deposition, radiation hydrodynamics, thermal diffusion, anisotropic material strength with material time history, and advanced models for fragmentation. Experiments at NDCX-II will explore the process of bubble and droplet formation (two-phase expansion of superheated metal solids using ion beams. Experiments at higher temperatures will explore equation of state and heavy ion fusion beam-to-target energy coupling efficiency. Ion beams allow precise control of local beam energy deposition providing uniform volumetric heating on a timescale shorter than that of hydrodynamic expansion. We also briefly discuss the effects of the move to exascale computing and related computational changes on general modeling codes in fusion.

  20. 3D Networked Tin Oxide/Graphene Aerogel with a Hierarchically Porous Architecture for High-Rate Performance Sodium-Ion Batteries.

    Science.gov (United States)

    Xie, Xiuqiang; Chen, Shuangqiang; Sun, Bing; Wang, Chengyin; Wang, Guoxiu

    2015-09-07

    Low-cost and sustainable sodium-ion batteries are regarded as a promising technology for large-scale energy storage and conversion. The development of high-rate anode materials is highly desirable for sodium-ion batteries. The optimization of mass transport and electron transfer is crucial in the discovery of electrode materials with good high-rate performances. Herein, we report the synthesis of 3 D interconnected SnO2 /graphene aerogels with a hierarchically porous structure as anode materials for sodium-ion batteries. The unique 3 D architecture was prepared by a facile in situ process, during which cross-linked 3 D conductive graphene networks with macro-/meso-sized hierarchical pores were formed and SnO2 nanoparticles were dispersed uniformly on the graphene surface simultaneously. Such a 3 D functional architecture not only facilitates the electrode-electrolyte interaction but also provides an efficient electron pathway within the graphene networks. When applied as anode materials in sodium-ion batteries, the as-prepared SnO2 /graphene aerogel exhibited high reversible capacity, improved cycling performance compared to SnO2 , and promising high-rate capability.

  1. Enhanced methods for computing spectra from CO5BOLD models using Linfor3D. Molecular bands in metal-poor stars

    CERN Document Server

    Gallagher, A J; Caffau, E; Bonifacio, P; Ludwig, H -G; Freytag, B

    2016-01-01

    Molecular features such as the G-band, CN-band and NH-band are important diagnostics for measuring a star's carbon and nitrogen abundances, especially in metal-poor stars where atomic lines are no longer visible in stellar spectra. Unlike atomic transitions, molecular features tend to form in bands, which cover large wavelength regions in a spectrum. While it is a trivial matter to compute carbon and nitrogen molecular bands under the assumption of 1D, it is extremely time consuming in 3D. In this contribution to the 2016 CO5BOLD workshop we review the improvements made to the 3D spectral synthesis code Linfor3D, and discuss the new challenges found when computing molecular features in 3D.

  2. Experimental approach for the uncertainty assessment of 3D complex geometry dimensional measurements using computed tomography at the mm and sub-mm scales

    DEFF Research Database (Denmark)

    Jiménez, Roberto; Torralba, Marta; Yagüe-Fabra, José A.

    2017-01-01

    The dimensional verification of miniaturized components with 3D complex geometries is particularly challenging. Computed Tomography (CT) can represent a suitable alternative solution to micro metrology tools based on optical and tactile techniques. However, the establishment of CT systems...... techniques, particularly when measuring miniaturized components with complex 3D geometries and their inability to measure inner parts. To validate the presented method, the most accepted standard currently available for CT sensors, the Verein Deutscher Ingenieure/Verband Deutscher Elektrotechniker (VDI...

  3. A Real-Time Magnetoencephalography Brain-Computer Interface Using Interactive 3D Visualization and the Hadoop Ecosystem

    Directory of Open Access Journals (Sweden)

    Wilbert A. McClay

    2015-09-01

    Full Text Available Ecumenically, the fastest growing segment of Big Data is human biology-related data and the annual data creation is on the order of zetabytes. The implications are global across industries, of which the treatment of brain related illnesses and trauma could see the most significant and immediate effects. The next generation of health care IT and sensory devices are acquiring and storing massive amounts of patient related data. An innovative Brain-Computer Interface (BCI for interactive 3D visualization is presented utilizing the Hadoop Ecosystem for data analysis and storage. The BCI is an implementation of Bayesian factor analysis algorithms that can distinguish distinct thought actions using magneto encephalographic (MEG brain signals. We have collected data on five subjects yielding 90% positive performance in MEG mid- and post-movement activity. We describe a driver that substitutes the actions of the BCI as mouse button presses for real-time use in visual simulations. This process has been added into a flight visualization demonstration. By thinking left or right, the user experiences the aircraft turning in the chosen direction. The driver components of the BCI can be compiled into any software and substitute a user’s intent for specific keyboard strikes or mouse button presses. The BCI’s data analytics OPEN ACCESS Brain. Sci. 2015, 5 420 of a subject’s MEG brainwaves and flight visualization performance are stored and analyzed using the Hadoop Ecosystem as a quick retrieval data warehouse.

  4. Rapid Reconstitution Packages (RRPs) implemented by integration of computational fluid dynamics (CFD) and 3D printed microfluidics.

    Science.gov (United States)

    Chi, Albert; Curi, Sebastian; Clayton, Kevin; Luciano, David; Klauber, Kameron; Alexander-Katz, Alfredo; D'hers, Sebastian; Elman, Noel M

    2014-08-01

    Rapid Reconstitution Packages (RRPs) are portable platforms that integrate microfluidics for rapid reconstitution of lyophilized drugs. Rapid reconstitution of lyophilized drugs using standard vials and syringes is an error-prone process. RRPs were designed using computational fluid dynamics (CFD) techniques to optimize fluidic structures for rapid mixing and integrating physical properties of targeted drugs and diluents. Devices were manufactured using stereo lithography 3D printing for micrometer structural precision and rapid prototyping. Tissue plasminogen activator (tPA) was selected as the initial model drug to test the RRPs as it is unstable in solution. tPA is a thrombolytic drug, stored in lyophilized form, required in emergency settings for which rapid reconstitution is of critical importance. RRP performance and drug stability were evaluated by high-performance liquid chromatography (HPLC) to characterize release kinetics. In addition, enzyme-linked immunosorbent assays (ELISAs) were performed to test for drug activity after the RRPs were exposed to various controlled temperature conditions. Experimental results showed that RRPs provided effective reconstitution of tPA that strongly correlated with CFD results. Simulation and experimental results show that release kinetics can be adjusted by tuning the device structural dimensions and diluent drug physical parameters. The design of RRPs can be tailored for a number of applications by taking into account physical parameters of the active pharmaceutical ingredients (APIs), excipients, and diluents. RRPs are portable platforms that can be utilized for reconstitution of emergency drugs in time-critical therapies.

  5. A Real-Time Magnetoencephalography Brain-Computer Interface Using Interactive 3D Visualization and the Hadoop Ecosystem.

    Science.gov (United States)

    McClay, Wilbert A; Yadav, Nancy; Ozbek, Yusuf; Haas, Andy; Attias, Hagaii T; Nagarajan, Srikantan S

    2015-09-30

    Ecumenically, the fastest growing segment of Big Data is human biology-related data and the annual data creation is on the order of zetabytes. The implications are global across industries, of which the treatment of brain related illnesses and trauma could see the most significant and immediate effects. The next generation of health care IT and sensory devices are acquiring and storing massive amounts of patient related data. An innovative Brain-Computer Interface (BCI) for interactive 3D visualization is presented utilizing the Hadoop Ecosystem for data analysis and storage. The BCI is an implementation of Bayesian factor analysis algorithms that can distinguish distinct thought actions using magneto encephalographic (MEG) brain signals. We have collected data on five subjects yielding 90% positive performance in MEG mid- and post-movement activity. We describe a driver that substitutes the actions of the BCI as mouse button presses for real-time use in visual simulations. This process has been added into a flight visualization demonstration. By thinking left or right, the user experiences the aircraft turning in the chosen direction. The driver components of the BCI can be compiled into any software and substitute a user's intent for specific keyboard strikes or mouse button presses. The BCI's data analytics OPEN ACCESS Brain. Sci. 2015, 5 420 of a subject's MEG brainwaves and flight visualization performance are stored and analyzed using the Hadoop Ecosystem as a quick retrieval data warehouse.

  6. A Real-Time Magnetoencephalography Brain-Computer Interface Using Interactive 3D Visualization and the Hadoop Ecosystem

    Science.gov (United States)

    McClay, Wilbert A.; Yadav, Nancy; Ozbek, Yusuf; Haas, Andy; Attias, Hagaii T.; Nagarajan, Srikantan S.

    2015-01-01

    Ecumenically, the fastest growing segment of Big Data is human biology-related data and the annual data creation is on the order of zetabytes. The implications are global across industries, of which the treatment of brain related illnesses and trauma could see the most significant and immediate effects. The next generation of health care IT and sensory devices are acquiring and storing massive amounts of patient related data. An innovative Brain-Computer Interface (BCI) for interactive 3D visualization is presented utilizing the Hadoop Ecosystem for data analysis and storage. The BCI is an implementation of Bayesian factor analysis algorithms that can distinguish distinct thought actions using magneto encephalographic (MEG) brain signals. We have collected data on five subjects yielding 90% positive performance in MEG mid- and post-movement activity. We describe a driver that substitutes the actions of the BCI as mouse button presses for real-time use in visual simulations. This process has been added into a flight visualization demonstration. By thinking left or right, the user experiences the aircraft turning in the chosen direction. The driver components of the BCI can be compiled into any software and substitute a user’s intent for specific keyboard strikes or mouse button presses. The BCI’s data analytics of a subject’s MEG brainwaves and flight visualization performance are stored and analyzed using the Hadoop Ecosystem as a quick retrieval data warehouse. PMID:26437432

  7. Computed Tomography Image Origin Identification based on Original Sensor Pattern Noise and 3D Image Reconstruction Algorithm Footprints.

    Science.gov (United States)

    Duan, Yuping; Bouslimi, Dalel; Yang, Guanyu; Shu, Huazhong; Coatrieux, Gouenou

    2016-06-08

    In this paper, we focus on the "blind" identification of the Computed Tomography (CT) scanner that has produced a CT image. To do so, we propose a set of noise features derived from the image chain acquisition and which can be used as CT-Scanner footprint. Basically, we propose two approaches. The first one aims at identifying a CT-Scanner based on an Original Sensor Pattern Noise (OSPN) that is intrinsic to the X-ray detectors. The second one identifies an acquisition system based on the way this noise is modified by its 3D image reconstruction algorithm. As these reconstruction algorithms are manufacturer dependent and kept secret, our features are used as input to train an SVM based classifier so as to discriminate acquisition systems. Experiments conducted on images issued from 15 different CT-Scanner models of 4 distinct manufacturers demonstrate that our system identifies the origin of one CT image with a detection rate of at least 94% and that it achieves better performance than Sensor Pattern Noise (SPN) based strategy proposed for general public camera devices.

  8. Rational Design of Prevascularized Large 3D Tissue Constructs Using Computational Simulations and Biofabrication of Geometrically Controlled Microvessels.

    Science.gov (United States)

    Arrigoni, Chiara; Bongio, Matilde; Talò, Giuseppe; Bersini, Simone; Enomoto, Junko; Fukuda, Junji; Moretti, Matteo

    2016-07-01

    A major challenge in the development of clinically relevant 3D tissue constructs is the formation of vascular networks for oxygenation, nutrient supply, and waste removal. To this end, this study implements a multimodal approach for the promotion of vessel-like structures formation in stiff fibrin hydrogels. Computational simulations have been performed to identify the easiest microchanneled configuration assuring normoxic conditions throughout thick cylindrical hydrogels (8 mm height, 6 mm ∅), showing that in our configuration a minimum of three microchannels (600 μm ∅), placed in a non-planar disposition, is required. Using small hydrogel bricks with oxygen distribution equal to the microchanneled configuration, this study demonstrates that among different culture conditions, co-culture of mesenchymal and endothelial cells supplemented with ANG-1 and VEGF leads to the most developed vascular network. Microchanneled hydrogels have been then cultured in the same conditions both statically and in a bioreactor for 7 d. Unexpectedly, the combination between shear forces and normoxic conditions is unable to promote microvascular networks formation in three-channeled hydrogels. Differently, application of either shear forces or normoxic conditions alone results in microvessels outgrowth. These results suggest that to induce angiogenesis in engineered constructs, complex interactions between several biochemical and biophysical parameters have to be modulated.

  9. The 3D MHD code GOEMHD3 for astrophysical plasmas with large Reynolds numbers. Code description, verification, and computational performance

    Science.gov (United States)

    Skála, J.; Baruffa, F.; Büchner, J.; Rampp, M.

    2015-08-01

    Context. The numerical simulation of turbulence and flows in almost ideal astrophysical plasmas with large Reynolds numbers motivates the implementation of magnetohydrodynamical (MHD) computer codes with low resistivity. They need to be computationally efficient and scale well with large numbers of CPU cores, allow obtaining a high grid resolution over large simulation domains, and be easily and modularly extensible, for instance, to new initial and boundary conditions. Aims: Our aims are the implementation, optimization, and verification of a computationally efficient, highly scalable, and easily extensible low-dissipative MHD simulation code for the numerical investigation of the dynamics of astrophysical plasmas with large Reynolds numbers in three dimensions (3D). Methods: The new GOEMHD3 code discretizes the ideal part of the MHD equations using a fast and efficient leap-frog scheme that is second-order accurate in space and time and whose initial and boundary conditions can easily be modified. For the investigation of diffusive and dissipative processes the corresponding terms are discretized by a DuFort-Frankel scheme. To always fulfill the Courant-Friedrichs-Lewy stability criterion, the time step of the code is adapted dynamically. Numerically induced local oscillations are suppressed by explicit, externally controlled diffusion terms. Non-equidistant grids are implemented, which enhance the spatial resolution, where needed. GOEMHD3 is parallelized based on the hybrid MPI-OpenMP programing paradigm, adopting a standard two-dimensional domain-decomposition approach. Results: The ideal part of the equation solver is verified by performing numerical tests of the evolution of the well-understood Kelvin-Helmholtz instability and of Orszag-Tang vortices. The accuracy of solving the (resistive) induction equation is tested by simulating the decay of a cylindrical current column. Furthermore, we show that the computational performance of the code scales very

  10. 3D computed tomographic evaluation of the upper airway space of patients undergoing mandibular distraction osteogenesis for micrognathia.

    Science.gov (United States)

    Bianchi, A; Betti, E; Badiali, G; Ricotta, F; Marchetti, C; Tarsitano, A

    2015-10-01

    Mandibular distraction osteogenesis (MDO) is currently an accepted method of treatment for patients requiring reconstruction of hypoplastic mandibles. To date one of the unsolved problems is how to assess the quantitative increase of mandible length needed to achieve a significant change in the volume of the posterior airway space (PAS) in children with mandibular micrognathia following distraction osteogenesis. The purpose of this study is to present quantitative volumetric evaluation of PAS in young patients having distraction osteogenesis for micrognathia using 3D-CT data sets and compare it with pre-operative situation. In this observational retrospective study, we report our experience in five consecutive patients who underwent MDO in an attempt to relieve severe upper airway obstruction. Each patient was evaluated before treatment (T0) and at the end of distraction procedure (T1) with computer tomography (CT) in axial, coronal, and sagittal planes and three-dimensional CT of the facial bones and upper airway. Using parameters to extract only data within anatomic constraints, a digital set of the edited upper airway volume was obtained. The volume determination was used for volumetric qualification of upper airway. The computed tomographic digital data were used to evaluate the upper airway volumes both pre-distraction and post-distraction. The mean length of distraction was 23 mm. Quantitative assessment of upper airway volume before and after distraction demonstrated increased volumes ranging from 84% to 3,087% with a mean of 536%. In conclusion, our study seems to show that DO can significantly increase the volume of the PAS in patients with upper airway obstruction following micrognathia, by an average of 5 times. Furthermore, the worse is the starting volume, the greater the increase in PAS to equal distraction.

  11. Examining the effect of pore size distribution and shape on flow through unsaturated peat using 3-D computed tomography

    Directory of Open Access Journals (Sweden)

    F. Rezanezhad

    2009-05-01

    Full Text Available The hydraulic conductivity of unsaturated peat soils is controlled by the peat structure which affects the air-filled porosity, pore size distribution and shape. This study investigates how the size and shape of pores affects the flow of water through peat soils. In this study we used X-ray Computed Tomography (CT, at 45 µm resolution under 5 specific soil-water pressure head levels to provide 3-D, high-resolution images that were used to detect the inner pore structure of peat samples under a changing water regime. Pore structure and configuration were found to be irregular, which affected the rate of water transmission through peat soils. The 3-D analysis suggested that pore distribution is dominated by a single large pore-space. At low pressure head, this single large air-filled pore imparted a more effective flowpath compared to smaller pores. Smaller pores were disconnected and the flowpath was more tortuous than in the single large air-filled pore, and their contribution to flow was negligible when the single large pore was active. We quantify the pore structure of peat soil that affects the hydraulic conductivity in the unsaturated condition, and demonstrate the validity of our estimation of peat unsaturated hydraulic conductivity by making a comparison with a standard permeameter-based method. Estimates of unsaturated hydraulic conductivities were made for the purpose of testing the sensitivity of pore shape and geometry parameters on the hydraulic properties of peats and how to evaluate the structure of the peat and its affects on parameterization. We also studied the ability to quantify these factors for different soil moisture contents in order to define how the factors controlling the shape coefficient vary with changes in soil water pressure head. The relation between measured and estimated unsaturated hydraulic conductivity at various heads shows that rapid initial drainage, that changes the air-filled pore properties, creates a

  12. Coronary computed tomography angiography with 320-row detector and using the AIDR-3D: initial experience; Angiotomografia computadorizada de coronarias com tomografo com 320 fileiras de detectores e utilizando o AIDR-3D: experiencia inicial

    Energy Technology Data Exchange (ETDEWEB)

    Sasdelli Neto, Roberto; Nomura, Cesar Higa; Macedo, Ana Carolina Sandoval; Bianco, Danilo Perussi; Kay, Fernando Uliana; Szarf, Gilberto; Teles, Gustavo Borges da Silva; Shoji, Hamilton; Santana Netto, Pedro Vieira; Passos, Rodrigo Bastos Duarte; Chate, Rodrigo Caruso; Ishikawa, Walther Yoshiharu; Lima, Joao Paulo Bacellar Costa; Rocha, Marcelo Assis; Marcos, Vinicius Neves; Funari, Marcelo Buarque de Gusmao, E-mail: roberto.neto@einstein.br [Hospital Israelita Albert Einstein, Sao Paulo, SP (Brazil); Failla, Bruna Bonaventura [Universidade Metodista de Sao Paulo, Sao Bernardo do Campo, SP (Brazil)

    2013-07-01

    Coronary computed tomography angiography (coronary CTA) is a powerful non-invasive imaging method to evaluate coronary artery disease. Nowadays, coronary CTA estimated effective radiation dose can be dramatically reduced using state-of-the-art scanners, such as 320-row detector CT (320-CT), without changing coronary CTA diagnostic accuracy. To optimize and further reduce the radiation dose, new iterative reconstruction algorithms were released recently by several CT manufacturers, and now they are used routinely in coronary CTA. This paper presents our first experience using coronary CTA with 320-CT and the Adaptive Iterative Dose Reduction 3D (AIDR-3D). In addition, we describe the current indications for coronary CTA in our practice as well as the acquisition standard protocols and protocols related to CT application for radiation dose reduction. In conclusion, coronary CTA radiation dose can be dramatically reduced following the 'as low as reasonable achievable' principle by combination of exam indication and well-documented technics for radiation dose reduction, such as beta blockers, low-kV, and also the newest iterative dose reduction software as AIDR-3D. (author)

  13. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 1: Theory and method

    Science.gov (United States)

    Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  14. Hierarchical Decompositions for the Computation of High-Dimensional Multivariate Normal Probabilities

    KAUST Repository

    Genton, Marc G.

    2017-09-07

    We present a hierarchical decomposition scheme for computing the n-dimensional integral of multivariate normal probabilities that appear frequently in statistics. The scheme exploits the fact that the formally dense covariance matrix can be approximated by a matrix with a hierarchical low rank structure. It allows the reduction of the computational complexity per Monte Carlo sample from O(n2) to O(mn+knlog(n/m)), where k is the numerical rank of off-diagonal matrix blocks and m is the size of small diagonal blocks in the matrix that are not well-approximated by low rank factorizations and treated as dense submatrices. This hierarchical decomposition leads to substantial efficiencies in multivariate normal probability computations and allows integrations in thousands of dimensions to be practical on modern workstations.

  15. A comparative evaluation of Cone Beam Computed Tomography (CBCT) and Multi-Slice CT (MSCT). Part II: On 3D model accuracy

    Energy Technology Data Exchange (ETDEWEB)

    Liang Xin, E-mail: Xin.Liang@med.kuleuven.b [Oral Imaging Centre, School of Dentistry, Oral Pathology and Maxillofacial Surgery, Faculty of Medicine, Catholic University of Leuven (Belgium); College of Stomatology, Dalian Medical University (China); Lambrichts, Ivo, E-mail: Ivo.Lambrichts@uhasselt.b [Department of Basic Medical Sciences, Histology and Electron Microscopy, Faculty of Medicine, University of Hasselt, Diepenbeek (Belgium); Sun Yi, E-mail: Sunyihello@hotmail.co [Oral Imaging Centre, School of Dentistry, Oral Pathology and Maxillofacial Surgery, Faculty of Medicine, Catholic University of Leuven (Belgium); Denis, Kathleen, E-mail: kathleen.denis@groept.b [Department of Industrial Sciences and Techology-Engineering (IWT), XIOS Hogeschool Limburg, Hasselt (Belgium); Hassan, Bassam, E-mail: b.hassan@acta.n [Department of Oral Radiology, Academic Centre for Dentistry Amsterdam (ACTA), Amsterdam (Netherlands); Li Limin, E-mail: Limin.Li@uz.kuleuven.b [Department of Paediatric Dentistry and Special Dental Care, School of Dentistry, Oral Pathology and Maxillofacial Surgery, Faculty of Medicine, Catholic University of Leuven (Belgium); Pauwels, Ruben, E-mail: Ruben.Pauwels@med.kuleuven.b [Oral Imaging Centre, School of Dentistry, Oral Pathology and Maxillofacial Surgery, Faculty of Medicine, Catholic University of Leuven (Belgium); Jacobs, Reinhilde, E-mail: Reinhilde.Jacobs@uz.kuleuven.b [Oral Imaging Centre, School of Dentistry, Oral Pathology and Maxillofacial Surgery, Faculty of Medicine, Catholic University of Leuven (Belgium)

    2010-08-15

    Aim: The study aim was to compare the geometric accuracy of three-dimensional (3D) surface model reconstructions between five Cone Beam Computed Tomography (CBCT) scanners and one Multi-Slice CT (MSCT) system. Materials and methods: A dry human mandible was scanned with five CBCT systems (NewTom 3G, Accuitomo 3D, i-CAT, Galileos, Scanora 3D) and one MSCT scanner (Somatom Sensation 16). A 3D surface bone model was created from the six systems. The reference (gold standard) 3D model was obtained with a high resolution laser surface scanner. The 3D models from the five systems were compared with the gold standard using a point-based rigid registration algorithm. Results: The mean deviation from the gold standard for MSCT was 0.137 mm and for CBCT were 0.282, 0.225, 0.165, 0.386 and 0.206 mm for the i-CAT, Accuitomo, NewTom, Scanora and Galileos, respectively. Conclusion: The results show that the accuracy of CBCT 3D surface model reconstructions is somewhat lower but acceptable comparing to MSCT from the gold standard.

  16. Automatic reconstruction of 3D urban landscape by computing connected regions and assigning them an average altitude from LiDAR point cloud image

    Science.gov (United States)

    Kawata, Yoshiyuki; Koizumi, Kohei

    2014-10-01

    The demand of 3D city modeling has been increasing in many applications such as urban planing, computer gaming with realistic city environment, car navigation system with showing 3D city map, virtual city tourism inviting future visitors to a virtual city walkthrough and others. We proposed a simple method for reconstructing a 3D urban landscape from airborne LiDAR point cloud data. The automatic reconstruction method of a 3D urban landscape was implemented by the integration of all connected regions, which were extracted and extruded from the altitude mask images. These mask images were generated from the gray scale LiDAR image by the altitude threshold ranges. In this study we demonstrated successfully in the case of Kanazawa city center scene by applying the proposed method to the airborne LiDAR point cloud data.

  17. Efficient 3D nonlinear warping of computed tomography: two high-performance implementations using OpenGL

    Science.gov (United States)

    Levin, David; Dey, Damini; Slomka, Piotr

    2005-04-01

    We have implemented two hardware accelerated Thin Plate Spline (TPS) warping algorithms. The first algorithm is a hardware-software approach (HW-TPS) that uses OpenGL Vertex Shaders to perform a grid warp. The second is a Graphics Processor based approach (GPU-TPS) that uses the OpenGL Shading Language to perform all warping calculations on the GPU. Comparison with a software TPS algorithm was used to gauge the speed and quality of both hardware algorithms. Quality was analyzed visually and using the Sum of Absolute Difference (SAD) similarity metric. Warping was performed using 92 user-defined displacement vectors for 512x512x173 serial lung CT studies, matching normal-breathing and deep-inspiration scans. On a Xeon 2.2 Ghz machine with an ATI Radeon 9800XT GPU the GPU-TPS required 26.1 seconds to perform a per-voxel warp compared to 148.2 seconds for the software algorithm. The HW-TPS needed 1.63 seconds to warp the same study while the GPU-TPS required 1.94 seconds and the software grid transform required 22.8 seconds. The SAD values calculated between the outputs of each algorithm and the target CT volume were 15.2%, 15.4% and 15.5% for the HW-TPS, GPU-TPS and both software algorithms respectively. The computing power of ubiquitous 3D graphics cards can be exploited in medical image processing to provide order of magnitude acceleration of nonlinear warping algorithms without sacrificing output quality.

  18. Linking microscopic spatial patterns of tissue destruction in emphysema to macroscopic decline in stiffness using a 3D computational model.

    Directory of Open Access Journals (Sweden)

    Harikrishnan Parameswaran

    2011-04-01

    Full Text Available Pulmonary emphysema is a connective tissue disease characterized by the progressive destruction of alveolar walls leading to airspace enlargement and decreased elastic recoil of the lung. However, the relationship between microscopic tissue structure and decline in stiffness of the lung is not well understood. In this study, we developed a 3D computational model of lung tissue in which a pre-strained cuboidal block of tissue was represented by a tessellation of space filling polyhedra, with each polyhedral unit-cell representing an alveolus. Destruction of alveolar walls was mimicked by eliminating faces that separate two polyhedral either randomly or in a spatially correlated manner, in which the highest force bearing walls were removed at each step. Simulations were carried out to establish a link between the geometries that emerged and the rate of decline in bulk modulus of the tissue block. The spatially correlated process set up by the force-based destruction lead to a significantly faster rate of decline in bulk modulus accompanied by highly heterogeneous structures than the random destruction pattern. Using the Karhunen-Loève transformation, an estimator of the change in bulk modulus from the first four moments of airspace cell volumes was setup. Simulations were then obtained for tissue destruction with different idealized alveolar geometry, levels of pre-strain, linear and nonlinear elasticity assumptions for alveolar walls and also mixed destruction patterns where both random and force-based destruction occurs simultaneously. In all these cases, the change in bulk modulus from cell volumes was accurately estimated. We conclude that microscopic structural changes in emphysema and the associated decline in tissue stiffness are linked by the spatial pattern of the destruction process.

  19. Advanced 3D textile composites reinforcements meso F.E analyses based on X-ray computed tomography

    Science.gov (United States)

    Naouar, Naim; Vidal-Salle, Emmanuelle; Boisse, Philippe

    2016-10-01

    Meso-FE modelling of 3D textile composites is a powerful tool, which can help determine mechanical properties and permeability of the reinforcements or composites. The quality of the meso FE analyses depends on the quality of the initial model. A direct method based on X-ray tomography imaging is introduced to determine finite element models based on the real geometry of 3D composite reinforcements. The method is particularly suitable regarding 3D textile reinforcements for which internal geometries are numerous and complex. The approach used for the separation of the yarns in different directions is specialized because the fibres flow in three-dimensional space. An analysis of the image's texture is performed. A hyperelastic model developed for fibre bundles is used for the simulation of the deformation of the 3D reinforcement.

  20. Lagrangian Finite Element Method for 3D time-dependent viscoelastic flow computation using integral constitutive models

    DEFF Research Database (Denmark)

    Rasmussen, Henrik Koblitz

    2000-01-01

    Lagrangian Integral Method) is a finite element method where Galerkons method is used for solving the governing equation in rectangular coordinates numerically. In the present implementation the velocity and pressure fields are approximated with tri-linear and constant shape functions, respectivly.The 3D LIM......) and polymeric solutions. Secondly, the 3D-LIM has also been applied to calculate the inflation of a thick sheet of a polymeric melt into a elliptic cylinder. These problems all include free surfaces. As the governing equations are solved for the particle positions, the motion of surfaces can be followed easily......A new technique for the numerical 3D simulation of time dependent flow of viscoelastic fluid is presented. The technique is based on a Lagrangian kinematics description of the fluid flow. The fluid is described by the Rivlin Sawyer integral constitutive equation. The method (referred to as the 3D...

  1. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs

    OpenAIRE

    Jin Woo Jung; Jung-Seob Lee; Dong-Woo Cho

    2016-01-01

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the ...

  2. High-performance supercapacitor and lithium-ion battery based on 3D hierarchical NH4F-induced nickel cobaltate nanosheet-nanowire cluster arrays as self-supported electrodes

    Science.gov (United States)

    Chen, Yuejiao; Qu, Baihua; Hu, Lingling; Xu, Zhi; Li, Qiuhong; Wang, Taihong

    2013-09-01

    A facile hydrothermal method is developed for large-scale production of three-dimensional (3D) hierarchical porous nickel cobaltate nanowire cluster arrays derived from nanosheet arrays with robust adhesion on Ni foam. Based on the morphology evolution upon reaction time, a possible formation process is proposed. The role of NH4F in formation of the structure has also been investigated based on different NH4F amounts. This unique structure significantly enhances the electroactive surface areas of the NiCo2O4 arrays, leading to better interfacial/chemical distributions at the nanoscale, fast ion and electron transfer and good strain accommodation. Thus, when it is used for supercapacitor testing, a specific capacitance of 1069 F g-1 at a very high current density of 100 A g-1 was obtained. Even after more than 10 000 cycles at various large current densities, a capacitance of 2000 F g-1 at 10 A g-1 with 93.8% retention can be achieved. It also exhibits a high-power density (26.1 kW kg-1) at a discharge current density of 80 A g-1. When used as an anode material for lithium-ion batteries (LIBs), it presents a high reversible capacity of 976 mA h g-1 at a rate of 200 mA g-1 with good cycling stability and rate capability. This array material is rarely used as an anode material. Our results show that this unique 3D hierarchical porous nickel cobaltite is promising for electrochemical energy applications.A facile hydrothermal method is developed for large-scale production of three-dimensional (3D) hierarchical porous nickel cobaltate nanowire cluster arrays derived from nanosheet arrays with robust adhesion on Ni foam. Based on the morphology evolution upon reaction time, a possible formation process is proposed. The role of NH4F in formation of the structure has also been investigated based on different NH4F amounts. This unique structure significantly enhances the electroactive surface areas of the NiCo2O4 arrays, leading to better interfacial/chemical distributions

  3. Data Extraction from Computer Acquired Images of a Given 3D Environment for Enhanced Computer Vision and its Applications in Kinematic Design of Robos

    Directory of Open Access Journals (Sweden)

    K. Selvaraj

    2010-01-01

    Full Text Available Problem statement: Literature review was mainly aiming at recognition of objects by the computer and to make explicit the information that is implicit in the attributes of 3D objects and their relative positioning in the 3D Environment (3DE as seen in the 2D images. However quantitative estimate of position of objects in the 3DE in terms of their x, y and z co-ordinates was not touched upon. This issue assumes important dimension in areas like Kinematic Design of Robos (KDR, while the Robo is negotiating with z field or Depth Field (DF. Approach: The existing methods such as pattern matching used by Robos for Depth Visualization (DV using a set of external commands, were reviewed in detail. A methodology was developed in this study to enable the Robo to quantify the depth by itself, instead of looking for external commands. Results: The Results are presented and discussed. The Results are presented and discussed. The major conclusions drawn based on the results were listed. Conclusion: The major contribution of the present study consists of computing the Depth (D1 corresponding to the depth (d measured from the photographic image of a 3DE. It had been concluded that, there exists an excellent agreement between the computed depth D1 and the corresponding actual Depth (D. The percent deviation of D1 from D (DP lies between ±2 over the entire region of the (DF. Through suitable interfacing of the developed equation with the kinematic design of Robos, the Robo can generate its own commands for DF negotiations.

  4. High-performance supercapacitor and lithium-ion battery based on 3D hierarchical NH4F-induced nickel cobaltate nanosheet-nanowire cluster arrays as self-supported electrodes.

    Science.gov (United States)

    Chen, Yuejiao; Qu, Baihua; Hu, Lingling; Xu, Zhi; Li, Qiuhong; Wang, Taihong

    2013-10-21

    A facile hydrothermal method is developed for large-scale production of three-dimensional (3D) hierarchical porous nickel cobaltate nanowire cluster arrays derived from nanosheet arrays with robust adhesion on Ni foam. Based on the morphology evolution upon reaction time, a possible formation process is proposed. The role of NH4F in formation of the structure has also been investigated based on different NH4F amounts. This unique structure significantly enhances the electroactive surface areas of the NiCo2O4 arrays, leading to better interfacial/chemical distributions at the nanoscale, fast ion and electron transfer and good strain accommodation. Thus, when it is used for supercapacitor testing, a specific capacitance of 1069 F g(-1) at a very high current density of 100 A g(-1) was obtained. Even after more than 10,000 cycles at various large current densities, a capacitance of 2000 F g(-1) at 10 A g(-1) with 93.8% retention can be achieved. It also exhibits a high-power density (26.1 kW kg(-1)) at a discharge current density of 80 A g(-1). When used as an anode material for lithium-ion batteries (LIBs), it presents a high reversible capacity of 976 mA h g(-1) at a rate of 200 mA g(-1) with good cycling stability and rate capability. This array material is rarely used as an anode material. Our results show that this unique 3D hierarchical porous nickel cobaltite is promising for electrochemical energy applications.

  5. Does breast MRI background parenchymal enhancement indicate metabolic activity? Qualitative and 3D quantitative computer imaging analysis.

    Science.gov (United States)

    Mema, Eralda; Mango, Victoria L; Guo, Xiaotao; Karcich, Jenika; Yeh, Randy; Wynn, Ralph T; Zhao, Binsheng; Ha, Richard S

    2017-06-24

    To investigate whether the degree of breast magnetic resonance imaging (MRI) background parenchymal enhancement (BPE) is associated with the amount of breast metabolic activity measured by breast parenchymal uptake (BPU) of 18F-FDG on positron emission tomography / computed tomography (PET/CT). An Institutional Review Board (IRB)-approved retrospective study was performed. Of 327 patients who underwent preoperative breast MRI from 1/1/12 to 12/31/15, 73 patients had 18F-FDG PET/CT evaluation performed within 1 week of breast MRI and no suspicious findings in the contralateral breast. MRI was performed on a 1.5T or 3.0T system. The imaging sequence included a triplane localizing sequence followed by sagittal fat-suppressed T2 -weighted sequence, and a bilateral sagittal T1 -weighted fat-suppressed fast spoiled gradient-echo sequence, which was performed before and three times after a rapid bolus injection (gadobenate dimeglumine, Multihance; Bracco Imaging; 0.1 mmol/kg) delivered through an IV catheter. The unaffected contralateral breast in these 73 patients underwent BPE and BPU assessments. For PET/CT BPU calculation, a 3D region of interest (ROI) was drawn around the glandular breast tissue and the maximum standardized uptake value (SUVmax ) was determined. Qualitative MRI BPE assessments were performed on a 4-point scale, in accordance with BI-RADS categories. Additional 3D quantitative MRI BPE analysis was performed using a previously published in-house technique. Spearman's correlation test and linear regression analysis was performed (SPSS, v. 24). The median time interval between breast MRI and 18F-FDG PET/CT evaluation was 3 days (range, 0-6 days). BPU SUVmax mean value was 1.6 (SD, 0.53). Minimum and maximum BPU SUVmax values were 0.71 and 4.0. The BPU SUVmax values significantly correlated with both the qualitative and quantitative measurements of BPE, respectively (r(71) = 0.59, P Qualitatively assessed high BPE group (BI-RADS 3/4) had significantly

  6. Illustrating the disassembly of 3D models

    KAUST Repository

    Guo, Jianwei

    2013-10-01

    We present a framework for the automatic disassembly of 3D man-made models and the illustration of the disassembly process. Given an assembled 3D model, we first analyze the individual parts using sharp edge loops and extract the contact faces between each pair of neighboring parts. The contact faces are then used to compute the possible moving directions of each part. We then present a simple algorithm for clustering the sets of the individual parts into meaningful sub-assemblies, which can be used for a hierarchical decomposition. We take the stability of sub-assemblies into account during the decomposition process by considering the upright orientation of the input models. Our framework also provides a user-friendly interface to enable the superimposition of the constraints for the decomposition. Finally, we visualize the disassembly process by generating an animated sequence. The experiments demonstrate that our framework works well for a variety of complex models. © 2013 Elsevier Ltd.

  7. Audio-visual perception of 3D cinematography: an fMRI study using condition-based and computation-based analyses.

    Science.gov (United States)

    Ogawa, Akitoshi; Bordier, Cecile; Macaluso, Emiliano

    2013-01-01

    The use of naturalistic stimuli to probe sensory functions in the human brain is gaining increasing interest. Previous imaging studies examined brain activity associated with the processing of cinematographic material using both standard "condition-based" designs, as well as "computational" methods based on the extraction of time-varying features of the stimuli (e.g. motion). Here, we exploited both approaches to investigate the neural correlates of complex visual and auditory spatial signals in cinematography. In the first experiment, the participants watched a piece of a commercial movie presented in four blocked conditions: 3D vision with surround sounds (3D-Surround), 3D with monaural sound (3D-Mono), 2D-Surround, and 2D-Mono. In the second experiment, they watched two different segments of the movie both presented continuously in 3D-Surround. The blocked presentation served for standard condition-based analyses, while all datasets were submitted to computation-based analyses. The latter assessed where activity co-varied with visual disparity signals and the complexity of auditory multi-sources signals. The blocked analyses associated 3D viewing with the activation of the dorsal and lateral occipital cortex and superior parietal lobule, while the surround sounds activated the superior and middle temporal gyri (S/MTG). The computation-based analyses revealed the effects of absolute disparity in dorsal occipital and posterior parietal cortices and of disparity gradients in the posterior middle temporal gyrus plus the inferior frontal gyrus. The complexity of the surround sounds was associated with activity in specific sub-regions of S/MTG, even after accounting for changes of sound intensity. These results demonstrate that the processing of naturalistic audio-visual signals entails an extensive set of visual and auditory areas, and that computation-based analyses can track the contribution of complex spatial aspects characterizing such life-like stimuli.

  8. Audio-visual perception of 3D cinematography: an fMRI study using condition-based and computation-based analyses.

    Directory of Open Access Journals (Sweden)

    Akitoshi Ogawa

    Full Text Available The use of naturalistic stimuli to probe sensory functions in the human brain is gaining increasing interest. Previous imaging studies examined brain activity associated with the processing of cinematographic material using both standard "condition-based" designs, as well as "computational" methods based on the extraction of time-varying features of the stimuli (e.g. motion. Here, we exploited both approaches to investigate the neural correlates of complex visual and auditory spatial signals in cinematography. In the first experiment, the participants watched a piece of a commercial movie presented in four blocked conditions: 3D vision with surround sounds (3D-Surround, 3D with monaural sound (3D-Mono, 2D-Surround, and 2D-Mono. In the second experiment, they watched two different segments of the movie both presented continuously in 3D-Surround. The blocked presentation served for standard condition-based analyses, while all datasets were submitted to computation-based analyses. The latter assessed where activity co-varied with visual disparity signals and the complexity of auditory multi-sources signals. The blocked analyses associated 3D viewing with the activation of the dorsal and lateral occipital cortex and superior parietal lobule, while the surround sounds activated the superior and middle temporal gyri (S/MTG. The computation-based analyses revealed the effects of absolute disparity in dorsal occipital and posterior parietal cortices and of disparity gradients in the posterior middle temporal gyrus plus the inferior frontal gyrus. The complexity of the surround sounds was associated with activity in specific sub-regions of S/MTG, even after accounting for changes of sound intensity. These results demonstrate that the processing of naturalistic audio-visual signals entails an extensive set of visual and auditory areas, and that computation-based analyses can track the contribution of complex spatial aspects characterizing such life

  9. A Computational Investigation of the Finite-Time Blow-Up of the 3D Incompressible Euler Equations Based on the Voigt Regularization

    CERN Document Server

    Larios, Adam; Titi, Edriss S; Wingate, Beth

    2015-01-01

    We report the results of a computational investigation of two recently proved blow-up criteria for the 3D incompressible Euler equations. These criteria are based on an inviscid regularization of the Euler equations known as the 3D Euler-Voigt equations. The latter are known to be globally well-posed. Moreover, simulations of the 3D Euler-Voigt equations also require less resolution than simulations of the 3D Euler equations for fixed values of the regularization parameter $\\alpha>0$. Therefore, the new blow-up criteria allow one to gain information about possible singularity formation in the 3D Euler equations indirectly; namely, by simulating the better-behaved 3D Euler-Voigt equations. The new criteria are only known to be sufficient criteria for blow-up. Therefore, to test the robustness of the inviscid-regularization approach, we also investigate analogous criteria for blow-up of the 1D Burgers equation, where blow-up is well-known to occur.

  10. Efficient computation of the spontaneous decay rate of arbitrarily shaped 3D nanosized resonators: a Krylov model-order reduction approach

    NARCIS (Netherlands)

    Zimmerling, J.T.; Wei, L.; Urbach, H.P.; Remis, R.F.

    2016-01-01

    We present a Krylov model-order reduction approach to efficiently compute the spontaneous decay (SD) rate of arbitrarily shaped 3D nanosized resonators. We exploit the symmetry of Maxwell’s equations to efficiently construct so-called reduced-order models that approximate the SD rate of a quantum

  11. A comparative evaluation of Cone Beam Computed Tomography (CBCT) and Multi-Slice CT (MSCT). Part II: On 3D model accuracy

    NARCIS (Netherlands)

    Liang, X.; Lambrichts, I.; Sun, Y.; Denis, K.; Hassan, B.; Li, L.; Pauwels, R.; Jacobs, R.

    2010-01-01

    Aim: The study aim was to compare the geometric accuracy of three-dimensional (3D) surface model reconstructions between five Cone Beam Computed Tomography (CBCT) scanners and one Multi-Slice CT (MSCT) system. Materials and methods: A dry human mandible was scanned with five CBCT systems (NewTom 3G,

  12. Stereological measures of trabecular bone structure: comparison of 3D micro computed tomography with 2D histological sections in human proximal tibial bone biopsies

    DEFF Research Database (Denmark)

    Thomsen, Jesper Skovhus; Laib, A.; Koller, B.;

    2005-01-01

    tibial metaphysis. The biopsies were embedded in methylmetacrylate before microCT scanning in a Scanco microCT 40 scanner at a resolution of 20 x 20 x 20 microm3, and the 3D data sets were analysed with a computer program. After microCT scanning, 16 sections were cut from the central 2 mm of each biopsy...

  13. A Hierarchical Load Balancing Policy for Grid Computing Environment

    Directory of Open Access Journals (Sweden)

    Said Fathy El Zoghdy

    2012-06-01

    Full Text Available With the rapid development of high-speed wide-area networks and powerful yet low-cost computational resources, grid computing has emerged as an attractive computing paradigm. It provides resources for solving large scientific applications. It is typically composed of heterogeneous resources such as clusters or sites at different administrative domains connected by networks with widely varying performance characteristics. The service level of the grid software infrastructure provides two essential functions for workload and resource management. To efficiently utilize the resources at these environments, effective load balancing and resource management policies are fundamentally important. This paper addresses the problem of load balancing and task migration in grid computing environments. We propose a fully decentralized two-level load balancing policy for computationally intensive tasks on a heterogeneous multi-cluster grid environment. It resolves the single point of failure problem which many of the current policies suffer from. In this policy, any site manager receives two kinds of tasks namely, remote tasks arriving from its associated local grid manager, and local tasks submitted directly to the site manager by local users in its domain, which makes this policy closer to reality and distinguishes it from any other similar policy. It distributes the grid workload based on the resources occupation ratio and the communication cost. The grid overall mean task response time is considered as the main performance metric that need to be minimized. The simulation results show that the proposed load balancing policy improves the grid overall mean task response time.

  14. Contributions of the musculus uvulae to velopharyngeal closure quantified with a 3D multi-muscle computational model

    Science.gov (United States)

    Inouye, Joshua M.; Lin, Kant Y.; Perry, Jamie L.; Blemker, Silvia S.

    2016-01-01

    The convexity of the dorsal surface of the velum is critical for normal velopharyngeal (VP) function and is largely attributed to the levator veli palatini (LVP) and musculus uvulae (MU). Studies have correlated a concave or flat nasal velar surface to symptoms of VP dysfunction including hypernasality and nasal air emission. In the context of surgical repair of cleft palates, the MU has been given relatively little attention in the literature compared with the larger LVP. A greater understanding of the mechanics of the MU will provide insight into understanding the influence of a dysmorphic MU, as seen in cleft palate, as it relates to VP function. The purpose of this study was to quantify the contributions of the MU to VP closure in a computational model. We created a novel 3D finite element model of the VP mechanism from MRI data collected from an individual with healthy non-cleft VP anatomy. The model components included the velum, posterior pharyngeal wall (PPW), LVP, and MU. Simulations were based on the muscle and soft tissue mechanical properties from the literature. We found that, similar to previous hypotheses, the MU acts as i) a space-occupying structure and ii) a velar extensor. As a space-occupying structure, the MU helps to nearly triple the midline VP contact length. As a velar extensor, the MU acting alone without the LVP decreases the VP distance 62%. Furthermore, activation of the MU decreases the LVP activation required for closure almost three-fold, from 20% (without MU) to 8% (with MU). Our study suggests that any possible salvaging and anatomical reconstruction of viable MU tissue in a cleft patient may improve VP closure due to its mechanical function. In the absence or dysfunction of MU tissue, implantation of autologous or engineered tissues at the velar midline, as a possible substitute for the MU, may produce a geometric convexity more favorable to VP closure. In the future, more complex models will provide further insight into optimal

  15. Application of a A* algorithm-based hierarchical path planning in 3D games%一种基于A*算法的分层路径规划在3D游戏中的应用研究

    Institute of Scientific and Technical Information of China (English)

    祁悦; 赵洋; 杨帆

    2014-01-01

    This paper focuses on how to generate a 3D navmesh and implement high-speed path-finding for autonomous characters in 3D games. We proposed a hierarchical solution to meet the requirement. Firstly, a navmesh is used to divide the state space. Then we used the A* algorithm to find the path of the navmesh with making use of binary heaps to optimize the OPEN table. We also proposed a method of corner points to find the final path. At last, we used ray transmission to detect the dynamic obstacles. The initial experimentation shows that our solution is able to be used in some 3D games.%以3D游戏中智能体的路径规划为研究背景,对于如何生成3D游戏的地形网格以及如何进行高速、准确的路径规划进行了研究。提出了一种分层的解决方案,首先通过建立导航网格划分状态空间;接着使用引入地形估价因子的算法进行网格寻路,并通过拐角点法生成路径,同时对算法的OPEN表进行了二叉堆的优化;最后介绍了基于射线透射的局部算法对动态障碍物的处理。实验分析表明该算法的有效性。

  16. The occlusion-adjusted prefabricated 3D mirror image templates by computer simulation: the image-guided navigation system application in difficult cases of head and neck reconstruction.

    Science.gov (United States)

    Cheng, Hsu-Tang; Wu, Chao-I; Tseng, Ching-Shiow; Chen, Hung-Chi; Lee, Wu-Song; Chen, Philip Kuo-Ting; Chang, Sophia Chia-Ning

    2009-11-01

    Computer applications in head and neck reconstruction are rapidly emerging and create not only a virtual environment for presurgical planning, but also help in image-guided navigational surgery. This study evaluates the use of prefabricated 3-dimensional (3D) mirror image templates made by computer-simulated adjusted occlusions to assist in microvascular prefabricated flap insertion during reconstructive surgery. Five patients underwent tumor ablation surgery in 1999 and survived for 8 years. Four of the patients with malignancy received radiation therapy. All patients in this study suffered from severe malocclusion causing trismus, headache, temporomandibular joint pain, an unsymmetrical face, and the inability of further osseointegrated teeth insertion. They underwent a 3D computer tomography examination and the nonprocessed raw data were sent for computer simulation in adjusting occlusion; thus, a mirror image template could be fabricated for microsurgical flap guidance. The computer simulated occlusion was acceptable and facial symmetry obtained. The use of the template resulted in a shorter operation time and recovery was as expected. The computer-simulated occlusion-adjusted 3D mirror image templates aid in the use of free vascularized bone flaps for restoring continuity to the mandible. The coordinated arch will help with further osseointegration teeth insertion.

  17. Simulation of dynamic behaviour of a digital displacement motor using transient 3d computational fluid dynamics analysis

    DEFF Research Database (Denmark)

    Rømer, Daniel; Johansen, Per; Pedersen, Henrik C.

    2013-01-01

    A fast rotating 1500 rpm radial piston digital displacement motor connected to a 350 bar high pressure manifold is simulated by means of transient 3D CFD analysis of a single pressure chamber. The analysis includes dynamic piston and valve movement, influencing the boundaries of the fluid domain....

  18. TOWARD HIGHLY SECURE AND AUTONOMIC COMPUTING SYSTEMS: A HIERARCHICAL APPROACH

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Hsien-Hsin S

    2010-05-11

    The overall objective of this research project is to develop novel architectural techniques as well as system software to achieve a highly secure and intrusion-tolerant computing system. Such system will be autonomous, self-adapting, introspective, with self-healing capability under the circumstances of improper operations, abnormal workloads, and malicious attacks. The scope of this research includes: (1) System-wide, unified introspection techniques for autonomic systems, (2) Secure information-flow microarchitecture, (3) Memory-centric security architecture, (4) Authentication control and its implication to security, (5) Digital right management, (5) Microarchitectural denial-of-service attacks on shared resources. During the period of the project, we developed several architectural techniques and system software for achieving a robust, secure, and reliable computing system toward our goal.

  19. Hybrid 3-D rocket trajectory program. Part 1: Formulation and analysis. Part 2: Computer programming and user's instruction. [computerized simulation using three dimensional motion analysis

    Science.gov (United States)

    Huang, L. C. P.; Cook, R. A.

    1973-01-01

    Models utilizing various sub-sets of the six degrees of freedom are used in trajectory simulation. A 3-D model with only linear degrees of freedom is especially attractive, since the coefficients for the angular degrees of freedom are the most difficult to determine and the angular equations are the most time consuming for the computer to evaluate. A computer program is developed that uses three separate subsections to predict trajectories. A launch rail subsection is used until the rocket has left its launcher. The program then switches to a special 3-D section which computes motions in two linear and one angular degrees of freedom. When the rocket trims out, the program switches to the standard, three linear degrees of freedom model.

  20. A heterogeneous hierarchical architecture for real-time computing

    Energy Technology Data Exchange (ETDEWEB)

    Skroch, D.A.; Fornaro, R.J.

    1988-12-01

    The need for high-speed data acquisition and control algorithms has prompted continued research in the area of multiprocessor systems and related programming techniques. The result presented here is a unique hardware and software architecture for high-speed real-time computer systems. The implementation of a prototype of this architecture has required the integration of architecture, operating systems and programming languages into a cohesive unit. This report describes a Heterogeneous Hierarchial Architecture for Real-Time (H{sup 2} ART) and system software for program loading and interprocessor communication.

  1. Development of a stereolithography (STL input and computer numerical control (CNC output algorithm for an entry-level 3-D printer

    Directory of Open Access Journals (Sweden)

    Brown, Andrew

    2014-08-01

    Full Text Available This paper presents a prototype Stereolithography (STL file format slicing and tool-path generation algorithm, which serves as a data front-end for a Rapid Prototyping (RP entry- level three-dimensional (3-D printer. Used mainly in Additive Manufacturing (AM, 3-D printers are devices that apply plastic, ceramic, and metal, layer by layer, in all three dimensions on a flat surface (X, Y, and Z axis. 3-D printers, unfortunately, cannot print an object without a special algorithm that is required to create the Computer Numerical Control (CNC instructions for printing. An STL algorithm therefore forms a critical component for Layered Manufacturing (LM, also referred to as RP. The purpose of this study was to develop an algorithm that is capable of processing and slicing an STL file or multiple files, resulting in a tool-path, and finally compiling a CNC file for an entry-level 3- D printer. The prototype algorithm was implemented for an entry-level 3-D printer that utilises the Fused Deposition Modelling (FDM process or Solid Freeform Fabrication (SFF process; an AM technology. Following an experimental method, the full data flow path for the prototype algorithm was developed, starting with STL data files, and then processing the STL data file into a G-code file format by slicing the model and creating a tool-path. This layering method is used by most 3-D printers to turn a 2-D object into a 3-D object. The STL algorithm developed in this study presents innovative opportunities for LM, since it allows engineers and architects to transform their ideas easily into a solid model in a fast, simple, and cheap way. This is accomplished by allowing STL models to be sliced rapidly, effectively, and without error, and finally to be processed and prepared into a G-code print file.

  2. The hierarchical expert tuning of PID controllers using tools of soft computing.

    Science.gov (United States)

    Karray, F; Gueaieb, W; Al-Sharhan, S

    2002-01-01

    We present soft computing-based results pertaining to the hierarchical tuning process of PID controllers located within the control loop of a class of nonlinear systems. The results are compared with PID controllers implemented either in a stand alone scheme or as a part of conventional gain scheduling structure. This work is motivated by the increasing need in the industry to design highly reliable and efficient controllers for dealing with regulation and tracking capabilities of complex processes characterized by nonlinearities and possibly time varying parameters. The soft computing-based controllers proposed are hybrid in nature in that they integrate within a well-defined hierarchical structure the benefits of hard algorithmic controllers with those having supervisory capabilities. The controllers proposed also have the distinct features of learning and auto-tuning without the need for tedious and computationally extensive online systems identification schemes.

  3. Cardiac C-arm computed tomography using a 3D + time ROI reconstruction method with spatial and temporal regularization

    Energy Technology Data Exchange (ETDEWEB)

    Mory, Cyril, E-mail: cyril.mory@philips.com [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, F-69621 Villeurbanne Cedex (France); Philips Research Medisys, 33 rue de Verdun, 92156 Suresnes (France); Auvray, Vincent; Zhang, Bo [Philips Research Medisys, 33 rue de Verdun, 92156 Suresnes (France); Grass, Michael; Schäfer, Dirk [Philips Research, Röntgenstrasse 24–26, D-22335 Hamburg (Germany); Chen, S. James; Carroll, John D. [Department of Medicine, Division of Cardiology, University of Colorado Denver, 12605 East 16th Avenue, Aurora, Colorado 80045 (United States); Rit, Simon [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1 (France); Centre Léon Bérard, 28 rue Laënnec, F-69373 Lyon (France); Peyrin, Françoise [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, F-69621 Villeurbanne Cedex (France); X-ray Imaging Group, European Synchrotron, Radiation Facility, BP 220, F-38043 Grenoble Cedex (France); Douek, Philippe; Boussel, Loïc [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1 (France); Hospices Civils de Lyon, 28 Avenue du Doyen Jean Lépine, 69500 Bron (France)

    2014-02-15

    Purpose: Reconstruction of the beating heart in 3D + time in the catheter laboratory using only the available C-arm system would improve diagnosis, guidance, device sizing, and outcome control for intracardiac interventions, e.g., electrophysiology, valvular disease treatment, structural or congenital heart disease. To obtain such a reconstruction, the patient's electrocardiogram (ECG) must be recorded during the acquisition and used in the reconstruction. In this paper, the authors present a 4D reconstruction method aiming to reconstruct the heart from a single sweep 10 s acquisition. Methods: The authors introduce the 4D RecOnstructiOn using Spatial and TEmporal Regularization (short 4D ROOSTER) method, which reconstructs all cardiac phases at once, as a 3D + time volume. The algorithm alternates between a reconstruction step based on conjugate gradient and four regularization steps: enforcing positivity, averaging along time outside a motion mask that contains the heart and vessels, 3D spatial total variation minimization, and 1D temporal total variation minimization. Results: 4D ROOSTER recovers the different temporal representations of a moving Shepp and Logan phantom, and outperforms both ECG-gated simultaneous algebraic reconstruction technique and prior image constrained compressed sensing on a clinical case. It generates 3D + time reconstructions with sharp edges which can be used, for example, to estimate the patient's left ventricular ejection fraction. Conclusions: 4D ROOSTER can be applied for human cardiac C-arm CT, and potentially in other dynamic tomography areas. It can easily be adapted to other problems as regularization is decoupled from projection and back projection.

  4. 3D non-destructive fluorescent X-ray computed tomography (FXCT) with a CdTe array

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, Chang Yeon; Lee, Won Ho; Kim, Young Hak [Dept. of Bio-convergence Engineering, Korea University Graduate School, Seoul (Korea, Republic of)

    2015-10-15

    In our research, the material was exposed to an X-ray and not only the conventional transmission image but also 3D images based on the information of characteristic X-ray detected by a 2D CdTe planar detector array were reconstructed. Since atoms have their own characteristic X-ray energy, our system was able to discriminate materials of even a same density if the materials were composed of different atomic numbers. We applied FXCT to distinguish various unknown materials with similar densities. The materials with similar densities were clearly distinguished in the 3D reconstructed images based on the information of the detected characteristic X-ray, while they were not discriminated from each other in the images based on the information of the detected transmission X-ray. In the fused images consisting of 3D transmitted and characteristic X-ray images, all of the positions, densities and atomic numbers of materials enclosed in plastic phantom or pipe were clearly identified by analyzing energy, position and amount of detected radiation.

  5. An "Expert System" For Stereoscopic 3D Visualization (with out the Application of Conventional Attachments to the Eyes) of Computer Acquired and Computer Generated Stereopairs

    OpenAIRE

    RANI, N. S.; Nathan, V V

    2009-01-01

    Problem statement: Though stereoscopic 3D visualization technology has made considerable progress, it was always associated with eye attachments, like wearing color glasses, wearing Polaroid glasses, using timed shutters. Approach: This has considerably retarded the popularity of 3D visualization technology. Though there are discrete references in the literature for developing stereoscopic 3D visualization without application of glasses, these methods involve transferring the attachments to t...

  6. Hierarchical 3D ZnIn2S4/graphene nano-heterostructures: their in situ fabrication with dual functionality in solar hydrogen production and as anodes for lithium ion batteries.

    Science.gov (United States)

    Kale, Sayali B; Kalubarme, Ramchandra S; Mahadadalkar, Manjiri A; Jadhav, Harsharaj S; Bhirud, Ashwini P; Ambekar, Jalinder D; Park, Chan-Jin; Kale, Bharat B

    2015-12-21

    Hierarchical 3D ZnIn2S4/graphene (ZnIn2S4/Gr) nano-heterostructures were successfully synthesized using an in-situ hydrothermal method. The dual functionality of these nano-heterostructures i.e. for solar hydrogen production and lithium ion batteries has been demonstrated for the first time. The ZnIn2S4/Gr nano-heterostructures were optimized by varying the concentrations of graphene for utmost hydrogen production. An inspection of the structure shows the existence of layered hexagonal ZnIn2S4 wrapped in graphene. The reduction of graphene oxide (GO) to graphene was confirmed by Raman and XPS analyses. The morphological analysis demonstrated that ultrathin ZnIn2S4 nanopetals are dispersed on graphene sheets. The optical study reveals the extended absorption edge to the visible region due to the presence of graphene and hence is used as a photocatalyst to transform H2S into eco-friendly hydrogen using solar light. The ZnIn2S4/Gr nano-heterostructure that is comprised of graphene and ZnIn2S4 in a weight ratio of 1 : 99 exhibits enhanced photocatalytically stable hydrogen production i.e. ∼6365 μmole h(-1) under visible light irradiation using just 0.2 g of nano-heterostructure, which is much higher as compared to bare hierarchical 3D ZnIn2S4. The heightened photocatalytic activity is attributed to the enhanced charge carrier separation due to graphene which acts as an excellent electron collector and transporter. Furthermore, the usage of nano-heterostructures and pristine ZnIn2S4 as anodes in lithium ion batteries confers the charge capacities of 590 and 320 mA h g(-1) after 220 cycles as compared to their initial reversible capacities of 645 and 523 mA h g(-1), respectively. These nano-heterostructures show high reversible capacity, excellent cycling stability, and high-rate capability indicating their potential as promising anode materials for LIBs. The excellent performance is due to the nanostructuring of ZnIn2S4 and the presence of a graphene layer, which

  7. Computer-assisted 3D design software for teaching neuro-ophthalmology of the oculomotor system and training new retinal surgery techniques

    Science.gov (United States)

    Glittenberg, Carl; Binder, Susanne

    2004-07-01

    Purpose: To create a more effective method of demonstrating complex subject matter in ophthalmology with the use of high end, 3-D, computer aided animation and interactive multimedia technologies. Specifically, to explore the possibilities of demonstrating the complex nature of the neuroophthalmological basics of the human oculomotor system in a clear and non confusing way, and to demonstrate new forms of retinal surgery in a manner that makes the procedures easier to understand for other retinal surgeons. Methods and Materials: Using Reflektions 4.3, Monzoom Pro 4.5, Cinema 4D XL 5.03, Cinema 4D XL 8 Studio Bundle, Mediator 4.0, Mediator Pro 5.03, Fujitsu-Siemens Pentium III and IV, Gericom Webgine laptop, M.G.I. Video Wave 1.0 and 5, Micrografix Picture Publisher 6.0 and 8, Amorphium 1.0, and Blobs for Windows, we created 3-D animations showing the origin, insertion, course, main direction of pull, and auxiliary direction of pull of the six extra-ocular eye muscles. We created 3-D animations that (a) show the intra-cranial path of the relevant oculomotor cranial nerves and which muscles are supplied by them, (b) show which muscles are active in each of the ten lines of sight, (c) demonstrate the various malfunctions of oculomotor systems, as well as (d) show the surgical techniques and the challenges in radial optic neurotomies and subretinal surgeries. Most of the 3-D animations were integrated in interactive multimedia teaching programs. Their effectiveness was compared to conventional teaching methods in a comparative study performed at the University of Vienna. We also performed a survey to examine the response of students being taught with the interactive programs. We are currently in the process of placing most of the animations in an interactive web site in order to make them freely available to everyone who is interested. Results: Although learning how to use complex 3-D computer animation and multimedia authoring software can be very time consuming and

  8. Real-time 3D display system based on computer-generated integral imaging technique using enhanced ISPP for hexagonal lens array.

    Science.gov (United States)

    Kim, Do-Hyeong; Erdenebat, Munkh-Uchral; Kwon, Ki-Chul; Jeong, Ji-Seong; Lee, Jae-Won; Kim, Kyung-Ah; Kim, Nam; Yoo, Kwan-Hee

    2013-12-01

    This paper proposes an open computer language (OpenCL) parallel processing method to generate the elemental image arrays (EIAs) for hexagonal lens array from a three-dimensional (3D) object such as a volume data. Hexagonal lens array has a higher fill factor compared to the rectangular lens array case; however, each pixel of an elemental image should be determined to belong to the single hexagonal lens. Therefore, generation for the entire EIA requires very large computations. The proposed method reduces processing time for the EIAs for a given hexagonal lens array. By using the proposed image space parallel processing (ISPP) method, it can enhance the processing speed that generates the 3D display of real-time interactive integral imaging for hexagonal lens array. In our experiment, we implemented the EIAs for hexagonal lens array in real-time and obtained a good processing time for a large of volume data for multiple cases of lens arrays.

  9. CUDA programs for GPU computing of Swendsen-Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models

    CERN Document Server

    Komura, Yukihiro

    2014-01-01

    We present sample CUDA programs for the GPU computing of the Swendsen-Wang multi-cluster spin flip algorithm. We deal with the classical spin models; the Ising model, the $q$-state Potts model, and the classical XY model. As for the lattice, both the 2D (square) lattice and the 3D (simple cubic) lattice are treated. We already reported the idea of the GPU implementation for 2D models [Comput. Phys. Commun. 183 (2012) 1155-1161]. We here explain the details of sample programs, and discuss the performance of the present GPU implementation for the 3D Ising and XY models. We also show the calculated results of the moment ratio for these models, and discuss phase transitions.

  10. 3D volume assessment techniques and computer-aided design and manufacturing for preoperative fabrication of implants in head and neck reconstruction.

    Science.gov (United States)

    Patel, Ashish; Otterburn, David; Saadeh, Pierre; Levine, Jamie; Hirsch, David L

    2011-11-01

    Cases in subdisciplines of craniomaxillofacial surgery--corrective jaw surgery, maxillofacial trauma, temporomandibular joint/skull base, jaw reconstruction, and postablative reconstruction-illustrate the ease of use, cost effectiveness, and superior results that can be achieved when using computer-assisted design and 3D volumetric analysis in preoperative surgical planning. This article discusses the materials and methods needed to plan cases, illustrates implementation of guides and implants, and describes postoperative analysis in relation to the virtually planned surgery.

  11. A fractal approach to the dark silicon problem: a comparison of 3D computer architectures -- standard slices versus fractal Menger sponge geometry

    OpenAIRE

    Herrmann, Richard

    2014-01-01

    The dark silicon problem, which limits the power-growth of future computer generations, is interpreted as a heat energy transport problem when increasing the energy emitting surface area within a given volume. A comparison of two 3D-configuration models, namely a standard slicing and a fractal surface generation within the Menger sponge geometry is presented. It is shown, that for iteration orders $n>3$ the fractal model shows increasingly better thermal behavior. As a consequence cooling pro...

  12. Development of a locally mass flux conservative computer code for calculating 3-D viscous flow in turbomachines

    Science.gov (United States)

    Walitt, L.

    1982-01-01

    The VANS successive approximation numerical method was extended to the computation of three dimensional, viscous, transonic flows in turbomachines. A cross-sectional computer code, which conserves mass flux at each point of the cross-sectional surface of computation was developed. In the VANS numerical method, the cross-sectional computation follows a blade-to-blade calculation. Numerical calculations were made for an axial annular turbine cascade and a transonic, centrifugal impeller with splitter vanes. The subsonic turbine cascade computation was generated in blade-to-blade surface to evaluate the accuracy of the blade-to-blade mode of marching. Calculated blade pressures at the hub, mid, and tip radii of the cascade agreed with corresponding measurements. The transonic impeller computation was conducted to test the newly developed locally mass flux conservative cross-sectional computer code. Both blade-to-blade and cross sectional modes of calculation were implemented for this problem. A triplet point shock structure was computed in the inducer region of the impeller. In addition, time-averaged shroud static pressures generally agreed with measured shroud pressures. It is concluded that the blade-to-blade computation produces a useful engineering flow field in regions of subsonic relative flow; and cross-sectional computation, with a locally mass flux conservative continuity equation, is required to compute the shock waves in regions of supersonic relative flow.

  13. Hybrid and hierarchical nanoreinforced polymer composites: Computational modelling of structure–properties relationships

    DEFF Research Database (Denmark)

    Mishnaevsky, Leon; Dai, Gaoming

    2014-01-01

    Hybrid and hierarchical polymer composites represent a promising group of materials for engineering applications. In this paper, computational studies of the strength and damage resistance of hybrid and hierarchical composites are reviewed. The reserves of the composite improvement are explored...... by using computational micromechanical models. It is shown that while glass/carbon fibers hybrid composites clearly demonstrate higher stiffness and lower weight with increasing the carbon content, they can have lower strength as compared with usual glass fiber polymer composites. Secondary...... nanoreinforcement can drastically increase the fatigue lifetime of composites. Especially, composites with the nanoplatelets localized in the fiber/matrix interface layer (fiber sizing) ensure much higher fatigue lifetime than those with the nanoplatelets in the matrix....

  14. Teaching Reform and Practice in Engineering Drawing Based on 3D Modeling with Computer%Teaching Reform and Practice in Engineering Drawing Based on 3D Modeling with Computer

    Institute of Scientific and Technical Information of China (English)

    WANG Jian-hua; HAO Yu-xin

    2011-01-01

    Based on the necessity of three dimensional modeling with computer in teaching reform, this paper is the summarization of reform practice of teaching engineering drawing in our institute. The teaching reform begins with three dimensional modeling that used computer instead of board. On the basis of target of teaching reform, set of teaching content, arrangement of class hour and teaching method, the research of teaching practice have been done, and very good effects in teaching of engineering drawing have been achieved.

  15. Hybrid grid-particle methods and Penalization: A Sherman-Morrison-Woodbury approach to compute 3D viscous flows using FFT

    Science.gov (United States)

    Chatelin, Robin; Poncet, Philippe

    2014-07-01

    Particle methods are very convenient to compute transport equations in fluid mechanics as their computational cost is linear and they are not limited by convection stability conditions. To achieve large 3D computations the method must be coupled to efficient algorithms for velocity computations, including a good treatment of non-homogeneities and complex moving geometries. The Penalization method enables to consider moving bodies interaction by adding a term in the conservation of momentum equation. This work introduces a new computational algorithm to solve implicitly in the same step the Penalization term and the Laplace operators, since explicit computations are limited by stability issues, especially at low Reynolds number. This computational algorithm is based on the Sherman-Morrison-Woodbury formula coupled to a GMRES iterative method to reduce the computations to a sequence of Poisson problems: this allows to formulate a penalized Poisson equation as a large perturbation of a standard Poisson, by means of algebraic relations. A direct consequence is the possibility to use fast solvers based on Fast Fourier Transforms for this problem with good efficiency from both the computational and the memory consumption point of views, since these solvers are recursive and they do not perform any matrix assembling. The resulting fluid mechanics computations are very fast and they consume a small amount of memory, compared to a reference solver or a linear system resolution. The present applications focus mainly on a coupling between transport equation and 3D Stokes equations, for studying biological organisms motion in a highly viscous flows with variable viscosity.

  16. Sectional depiction of the pelvic floor by CT, MR imaging and sheet plastination: computer-aided correlation and 3D model

    Energy Technology Data Exchange (ETDEWEB)

    Beyersdorff, D.; Taupitz, M.; Hamm, B. [Dept. of Radiology, Humboldt Univ., Berlin (Germany); Schiemann, T. [Inst. for Mathematics and Computer Science in Medicine, University of Hamburg (Germany); Kooijman, H. [Philips Medical Systems, Hamburg (Germany); Nicolas, V. [Dept. of Radiology and Nuclear Medicine, BG Kliniken Bergmannsheil, Bochum (Germany)

    2001-04-01

    The structures of the pelvic floor are clinically important but difficult to assess. To facilitate the understanding of the complicated pelvic floor anatomy on sectional images obtained by CT and MR imaging, and to make the representation more vivid, a computer-aided 3D model was created from a male and a female torso to develop a teaching tool. A male and a female cadaver torso were investigated by means of CT, MR imaging, and serial-section sheet plastination. A 3D reconstruction of the pelvic floor and adjacent structures was performed by fusion of CT and MR imaging data sets with sheet plastination sections. Corresponding sections from all three methods could be compared and visualized in their 3D context. Sheet plastination allows distinction of connective tissue, muscles, and pelvic organs down to a microscopic level. In combination with CT, MR imaging, and sheet plastination a 3D model of the pelvic floor offers a better understanding of the complex pelvic anatomy. This knowledge may be applied in the diagnostic imaging of urinary incontinence or prolapse and prior to prostate surgery. (orig.)

  17. Mechanisms of hierarchical reinforcement learning in corticostriatal circuits 1: computational analysis.

    Science.gov (United States)

    Frank, Michael J; Badre, David

    2012-03-01

    Growing evidence suggests that the prefrontal cortex (PFC) is organized hierarchically, with more anterior regions having increasingly abstract representations. How does this organization support hierarchical cognitive control and the rapid discovery of abstract action rules? We present computational models at different levels of description. A neural circuit model simulates interacting corticostriatal circuits organized hierarchically. In each circuit, the basal ganglia gate frontal actions, with some striatal units gating the inputs to PFC and others gating the outputs to influence response selection. Learning at all of these levels is accomplished via dopaminergic reward prediction error signals in each corticostriatal circuit. This functionality allows the system to exhibit conditional if-then hypothesis testing and to learn rapidly in environments with hierarchical structure. We also develop a hybrid Bayesian-reinforcement learning mixture of experts (MoE) model, which can estimate the most likely hypothesis state of individual participants based on their observed sequence of choices and rewards. This model yields accurate probabilistic estimates about which hypotheses are attended by manipulating attentional states in the generative neural model and recovering them with the MoE model. This 2-pronged modeling approach leads to multiple quantitative predictions that are tested with functional magnetic resonance imaging in the companion paper.

  18. Design optimization for accurate flow simulations in 3D printed vascular phantoms derived from computed tomography angiography

    Science.gov (United States)

    Sommer, Kelsey; Izzo, Rick L.; Shepard, Lauren; Podgorsak, Alexander R.; Rudin, Stephen; Siddiqui, Adnan H.; Wilson, Michael F.; Angel, Erin; Said, Zaid; Springer, Michael; Ionita, Ciprian N.

    2017-03-01

    3D printing has been used to create complex arterial phantoms to advance device testing and physiological condition evaluation. Stereolithographic (STL) files of patient-specific cardiovascular anatomy are acquired to build cardiac vasculature through advanced mesh-manipulation techniques. Management of distal branches in the arterial tree is important to make such phantoms practicable. We investigated methods to manage the distal arterial flow resistance and pressure thus creating physiologically and geometrically accurate phantoms that can be used for simulations of image-guided interventional procedures with new devices. Patient specific CT data were imported into a Vital Imaging workstation, segmented, and exported as STL files. Using a mesh-manipulation program (Meshmixer) we created flow models of the coronary tree. Distal arteries were connected to a compliance chamber. The phantom was then printed using a Stratasys Connex3 multimaterial printer: the vessel in TangoPlus and the fluid flow simulation chamber in Vero. The model was connected to a programmable pump and pressure sensors measured flow characteristics through the phantoms. Physiological flow simulations for patient-specific vasculature were done for six cardiac models (three different vasculatures comparing two new designs). For the coronary phantom we obtained physiologically relevant waves which oscillated between 80 and 120 mmHg and a flow rate of 125 ml/min, within the literature reported values. The pressure wave was similar with those acquired in human patients. Thus we demonstrated that 3D printed phantoms can be used not only to reproduce the correct patient anatomy for device testing in image-guided interventions, but also for physiological simulations. This has great potential to advance treatment assessment and diagnosis.

  19. Using 3D in Visualization

    DEFF Research Database (Denmark)

    Wood, Jo; Kirschenbauer, Sabine; Döllner, Jürgen

    2005-01-01

    to display 3D imagery. The extra cartographic degree of freedom offered by using 3D is explored and offered as a motivation for employing 3D in visualization. The use of VR and the construction of virtual environments exploit navigational and behavioral realism, but become most usefil when combined...... with abstracted representations embedded in a 3D space. The interactions between development of geovisualization, the technology used to implement it and the theory surrounding cartographic representation are explored. The dominance of computing technologies, driven particularly by the gaming industry...

  20. 3D Surgical Simulation

    Science.gov (United States)

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  1. 2D-3D radiograph to cone-beam computed tomography (CBCT) registration for C-arm image-guided robotic surgery.

    Science.gov (United States)

    Liu, Wen Pei; Otake, Yoshito; Azizian, Mahdi; Wagner, Oliver J; Sorger, Jonathan M; Armand, Mehran; Taylor, Russell H

    2015-08-01

    C-arm radiographs are commonly used for intraoperative image guidance in surgical interventions. Fluoroscopy is a cost-effective real-time modality, although image quality can vary greatly depending on the target anatomy. Cone-beam computed tomography (CBCT) scans are sometimes available, so 2D-3D registration is needed for intra-procedural guidance. C-arm radiographs were registered to CBCT scans and used for 3D localization of peritumor fiducials during a minimally invasive thoracic intervention with a da Vinci Si robot. Intensity-based 2D-3D registration of intraoperative radiographs to CBCT was performed. The feasible range of X-ray projections achievable by a C-arm positioned around a da Vinci Si surgical robot, configured for robotic wedge resection, was determined using phantom models. Experiments were conducted on synthetic phantoms and animals imaged with an OEC 9600 and a Siemens Artis zeego, representing the spectrum of different C-arm systems currently available for clinical use. The image guidance workflow was feasible using either an optically tracked OEC 9600 or a Siemens Artis zeego C-arm, resulting in an angular difference of Δθ:∼ 30°. The two C-arm systems provided TRE mean ≤ 2.5 mm and TRE mean ≤ 2.0 mm, respectively (i.e., comparable to standard clinical intraoperative navigation systems). C-arm 3D localization from dual 2D-3D registered radiographs was feasible and applicable for intraoperative image guidance during da Vinci robotic thoracic interventions using the proposed workflow. Tissue deformation and in vivo experiments are required before clinical evaluation of this system.

  2. A 3D multilevel model of damage and strength of wood: Analysis of microstructural effects

    DEFF Research Database (Denmark)

    Qing, Hai; Mishnaevsky, Leon

    2011-01-01

    A 3D hierarchical computational model of damage and strength of wood is developed. The model takes into account the four scale microstructures of wood, including the microfibril reinforced structure at nanoscale, multilayered cell walls at microscale, hexagon-shape-tube cellular structure at meso...

  3. 近距离3D人机交互技术研究实现%Research and implementation of 3D human computer interactive technology in close scenario

    Institute of Scientific and Technical Information of China (English)

    刘川; 邬春学

    2015-01-01

    3D human-computer interaction is an amalgamation of computer graphics, virtual reality and pattern recognition, which consists of virtual environment and 3D object recognition. A total solution consisting of virtual environment rendering and 3D object recognition is proposed and applied in the close human-computer interaction scenes, which simulate virtual scenario with the ratio of 1∶1. The research analyses the transformation between virtual environment and reality; three main factors which have influence on stereo display of virtual object have been explored, which include the camera angle, the distance between two cameras in OpenGL and the stereo image pairs generation;3D object recognition is implemented on Intel Perceptual Computing. Experiments show that the solution has excellent 3D effect in simulation virtual scenario with 1∶1 ratio and high gesture recognition rate.%3D人机交互技术是计算机图形学、虚拟现实和模式识别的交叉融合领域,可分为虚拟环境的显示和三维物体识别。该研究将虚拟环境显示和三维物体识别整合成一个完整的解决方案并应用到1∶1模拟虚拟场景的近距离交互。研究了虚拟现实之间的坐标转换;分析了影响虚拟物体立体显示的三个主要因素:OpenGL中摄像机的张角,摄像机间距和立体图像对的产生;并实现了基于Intel Perceptual Computing的三维物体识别。实验结果显示:该方案在1∶1模拟虚拟场景方面具有良好的3D显示效果,同时在手势识别方面有较高的识别率。

  4. The advantage of the three dimensional computed tomographic (3 D-CT for ensuring accurate bone incision in sagittal split ramus osteotomy

    Directory of Open Access Journals (Sweden)

    Coen Pramono D

    2005-03-01

    Full Text Available Functional and aesthetic dysgnathia surgery requires accurate pre-surgical planning, including the surgical technique to be used related with the difference of anatomical structures amongst individuals. Programs that simulate the surgery become increasingly important. This can be mediated by using a surgical model, conventional x-rays as panoramic, cephalometric projections and another sophisticated method such as a three dimensional computed tomography (3 D-CT. A patient who had undergone double jaw surgeries with difficult anatomical landmarks was presented. In this case the mandible foramens were seen highly relatively related to the sigmoid notches. Therefore, ensuring the bone incisions in sagittal split was presumed to be difficult. A 3D-CT was made and considered to be very helpful in supporting the pre-operative diagnostic.

  5. Computer-aided classification of liver tumors in 3D ultrasound images with combined deformable model segmentation and support vector machine

    Science.gov (United States)

    Lee, Myungeun; Kim, Jong Hyo; Park, Moon Ho; Kim, Ye-Hoon; Seong, Yeong Kyeong; Cho, Baek Hwan; Woo, Kyoung-Gu

    2014-03-01

    In this study, we propose a computer-aided classification scheme of liver tumor in 3D ultrasound by using a combination of deformable model segmentation and support vector machine. For segmentation of tumors in 3D ultrasound images, a novel segmentation model was used which combined edge, region, and contour smoothness energies. Then four features were extracted from the segmented tumor including tumor edge, roundness, contrast, and internal texture. We used a support vector machine for the classification of features. The performance of the developed method was evaluated with a dataset of 79 cases including 20 cysts, 20 hemangiomas, and 39 hepatocellular carcinomas, as determined by the radiologist's visual scoring. Evaluation of the results showed that our proposed method produced tumor boundaries that were equal to or better than acceptable in 89.8% of cases, and achieved 93.7% accuracy in classification of cyst and hemangioma.

  6. 3D-QSPR Method of Computational Technique Applied on Red Reactive Dyes by Using CoMFA Strategy

    Science.gov (United States)

    Mahmood, Uzma; Rashid, Sitara; Ali, S. Ishrat; Parveen, Rasheeda; Zaheer-ul-Haq; Ambreen, Nida; Khan, Khalid Mohammed; Perveen, Shahnaz; Voelter, Wolfgang

    2011-01-01

    Cellulose fiber is a tremendous natural resource that has broad application in various productions including the textile industry. The dyes, which are commonly used for cellulose printing, are “reactive dyes” because of their high wet fastness and brilliant colors. The interaction of various dyes with the cellulose fiber depends upon the physiochemical properties that are governed by specific features of the dye molecule. The binding pattern of the reactive dye with cellulose fiber is called the ligand-receptor concept. In the current study, the three dimensional quantitative structure property relationship (3D-QSPR) technique was applied to understand the red reactive dyes interactions with the cellulose by the Comparative Molecular Field Analysis (CoMFA) method. This method was successfully utilized to predict a reliable model. The predicted model gives satisfactory statistical results and in the light of these, it was further analyzed. Additionally, the graphical outcomes (contour maps) help us to understand the modification pattern and to correlate the structural changes with respect to the absorptivity. Furthermore, the final selected model has potential to assist in understanding the charachteristics of the external test set. The study could be helpful to design new reactive dyes with better affinity and selectivity for the cellulose fiber. PMID:22272108

  7. 3D-QSPR Method of Computational Technique Applied on Red Reactive Dyes by Using CoMFA Strategy

    Directory of Open Access Journals (Sweden)

    Shahnaz Perveen

    2011-12-01

    Full Text Available Cellulose fiber is a tremendous natural resource that has broad application in various productions including the textile industry. The dyes, which are commonly used for cellulose printing, are “reactive dyes” because of their high wet fastness and brilliant colors. The interaction of various dyes with the cellulose fiber depends upon the physiochemical properties that are governed by specific features of the dye molecule. The binding pattern of the reactive dye with cellulose fiber is called the ligand-receptor concept. In the current study, the three dimensional quantitative structure property relationship (3D-QSPR technique was applied to understand the red reactive dyes interactions with the cellulose by the Comparative Molecular Field Analysis (CoMFA method. This method was successfully utilized to predict a reliable model. The predicted model gives satisfactory statistical results and in the light of these, it was further analyzed. Additionally, the graphical outcomes (contour maps help us to understand the modification pattern and to correlate the structural changes with respect to the absorptivity. Furthermore, the final selected model has potential to assist in understanding the charachteristics of the external test set. The study could be helpful to design new reactive dyes with better affinity and selectivity for the cellulose fiber.

  8. PLOT3D user's manual

    Science.gov (United States)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  9. 3D computation of an incipient motion of a sessile drop on a rigid surface with contact angle hysteresis

    Science.gov (United States)

    Linder, Nicklas; Criscione, Antonio; Roisman, Ilia V.; Marschall, Holger; Tropea, Cameron

    2015-12-01

    Contact line phenomena govern a large number of multiphase flows. A reliable description of the contact line dynamics is therefore essential for prediction of such flows. Well-known difficulties of computation of the wetting phenomena include the mesh dependence of the results caused by flow singularity near the contact line and accurate estimation of its propagating velocity. The present study deals with the computational problem arising from the discontinuity in the dependence of the dynamic contact angle on the propagation velocity, associated with the contact angle hysteresis. The numerical simulations are performed using the volume of fluid method. The boundary conditions in the neighborhood of the contact line are switched depending on the value of the computed current local contact angle between a propagating contact line and a pinning condition. The method is applied to the simulation of the deformation and incipient motion of a shedding drop. The model is validated by comparison of the numerical predictions with experimental data.

  10. Exact computation of the Voronoi Diagram of spheres in 3D, its topology and its geometric invariants

    DEFF Research Database (Denmark)

    Anton, François; Mioc, Darka; Santos, Marcelo

    2011-01-01

    In this paper, we are addressing the exact computation of the Delaunay graph (or quasi-triangulation) and the Voronoi diagram of spheres using Wu’s algorithm. Our main contribution is first a methodology for automated derivation of invariants of the Delaunay empty circumcircle predicate for spheres...... and the Voronoi vertex of four spheres, then the application of this methodology to get all geometrical invariants that intervene in this problem and the exact computation of the Delaunay graph and the Voronoi diagram of spheres. To the best of our knowledge, there does not exist a comprehensive treatment...... of the exact computation with geometrical invariants of the Delaunay graph and the Voronoi diagram of spheres. Starting from the system of equations defining the zero-dimensional algebraic set of the problem, we are following Wu’s algorithm to transform the initial system into an equivalent Wu characteristic...

  11. Scaling and performance of a 3-D radiation hydrodynamics code on message-passing parallel computers: final report

    Energy Technology Data Exchange (ETDEWEB)

    Hayes, J C; Norman, M

    1999-10-28

    This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.

  12. Design, Fabrication and Computational Characterization of a 3D Micro-Valve Built by Multi-Photon Polymerization

    Directory of Open Access Journals (Sweden)

    Stratos Galanopoulos

    2014-08-01

    Full Text Available We report on the design, modeling and fabrication by multi-photon polymerization of a complex medical fluidic device. The physical dimensions of the built micro-valve prototype are compared to those of its computer-designed model. Important fabrication issues such as achieving high dimensional resolution and ability to control distortion due to shrinkage are presented and discussed. The operational performance of both multi-photon and CAD-created models under steady blood flow conditions was evaluated and compared through computational fluid dynamics analysis.

  13. Stratospheric age of air computed with trajectories based on various 3D-Var and 4D-Var data sets

    Directory of Open Access Journals (Sweden)

    M. P. Scheele

    2005-01-01

    Full Text Available The age of stratospheric air is computed with a trajectory model, using ECMWF ERA-40 3D-Var and operational 4D-Var winds. Analysis as well as forecast data are used. In the latter case successive forecast segments are put together to get a time series of the wind fields. This is done for different forecast segment lengths. The sensitivity of the computed age to the forecast segment length and assimilation method are studied, and the results are compared with observations and with results from a chemistry transport model that uses the same data sets. A large number of backward trajectories are started in the stratosphere, and from the fraction of these trajectories that has passed the tropopause the age of air is computed. First, for ten different data sets 50-day backward trajectories starting in the tropical lower stratosphere are computed. The results show that in this region the computed cross-tropopause transport decreases with increasing forecast segment length. Next, for three selected data sets (3D-Var 24-h and 4D-Var 72-h forecast segments, and 4D-Var analyses 5-year backward trajectories are computed that start all over the globe at an altitude of 20km. For all data sets the computed ages of air in the extratropics are smaller than the observation-based age. For 4D-Var forecast series they are closest to the observation-based values, but still 0.5-1.5 year too small. Compared to the difference in age between the results for the different data sets, the difference in age between the trajectory and the chemistry transport model results is small.

  14. Computational study on 3D structure of L-aspartic acid and L-glutamic acid: molecular descriptors and properties

    Directory of Open Access Journals (Sweden)

    Stefaniu Amalia

    2016-06-01

    Full Text Available The aim of this work is to provide a comprehensive and complex analysis of molecular descriptors and properties of two similar amino acids, L-Aspartic acid and L-Glutamic acid, using a software tool for calculations and properties predictions. As amino acids are model compounds for predicting the physical-chemical properties and behavior of biological, larger molecules as peptides or proteins, researches were focused on providing accurate mechanical calculations using: molecular/mechanical methods. Our study aims to initiate a linear scaling approach, by dividing a large system into small subsystems and performing the calculations for each, individually, then, embedding and correcting the information globally. The calculations were performed on the 3D structure of the studied amino acids that were first generated, as CPK model, and optimized by energy minimization. A comparative assay on their topological, molecular descriptors and properties was conducted, in vacuum and in water, using the Hartree-Fock model and second-order Møller-Plesset perturbation theory MP2 for predicting structure, energy and property calculations with Spartan’14 software. Values of molecular properties such as area, volume, polar surface area, polarizability, ovality, logP, dipole moment, HOMO-LUMO gap, distances and angles between atoms, were obtained. The results have been interpreted in terms of electronic effects of side chain groups, molecular deformability, steric factors and reactivity. This approach can be extended to other amino acids in order to predict protein-ligand interactions, important aspects in drug design studies and protein engineering.

  15. Computer-aided diagnosis: a 3D segmentation method for lung nodules in CT images by use of a spiral-scanning technique

    Science.gov (United States)

    Wang, Jiahui; Engelmann, Roger; Li, Qiang

    2008-03-01

    Lung nodule segmentation in computed tomography (CT) plays an important role in computer-aided detection, diagnosis, and quantification systems for lung cancer. In this study, we developed a simple but accurate nodule segmentation method in three-dimensional (3D) CT. First, a volume of interest (VOI) was determined at the location of a nodule. We then transformed the VOI into a two-dimensional (2D) image by use of a "spiral-scanning" technique, in which a radial line originating from the center of the VOI spirally scanned the VOI. The voxels scanned by the radial line were arranged sequentially to form a transformed 2D image. Because the surface of a nodule in 3D image became a curve in the transformed 2D image, the spiral-scanning technique considerably simplified our segmentation method and enabled us to obtain accurate segmentation results. We employed a dynamic programming technique to delineate the "optimal" outline of a nodule in the 2D image, which was transformed back into the 3D image space to provide the interior of the nodule. The proposed segmentation method was trained on the first and was tested on the second Lung Image Database Consortium (LIDC) datasets. An overlap between nodule regions provided by computer and by the radiologists was employed as a performance metric. The experimental results on the LIDC database demonstrated that our segmentation method provided relatively robust and accurate segmentation results with mean overlap values of 66% and 64% for the nodules in the first and second LIDC datasets, respectively, and would be useful for the quantification, detection, and diagnosis of lung cancer.

  16. Development and evaluation of a new 3-D digitization and computer graphic system to study the anatomic tissue and restoration surfaces.

    Science.gov (United States)

    Dastane, A; Vaidyanathan, T K; Vaidyanathan, J; Mehra, R; Hesby, R

    1996-01-01

    It is necessary to visualize and reconstruct tissue anatomic surfaces accurately for a variety of oral rehabilitation applications such as surface wear characterization and automated fabrication of dental restorations, accuracy of reproduction of impression and die materials, etc. In this investigation, a 3-D digitization and computer-graphic system was developed for surface characterization. The hardware consists of a profiler assembly for digitization in an MTS biomechanical test system with an artificial mouth, an IBM PS/2 computer model 70 for data processing and a Hewlett-Packard laser printer for hardcopy outputs. The software used includes a commercially available Surfer 3-D graphics package, a public domain data-fitting alignment software and an inhouse Pascal program for intercommunication plus some other limited tasks. Surfaces were digitized before and after rotation by angular displacement, the digital data were interpolated by Surfer to provide a data grid and the surfaces were computer graphically reconstructed: Misaligned surfaces were aligned by the data-fitting alignment software under different choices of parameters. The effect of different interpolation parameters (e.g. grid size, method of interpolation) and extent of rotation on the alignment accuracy was determined. The results indicate that improved alignment accuracy results from optimization of interpolation parameters and minimization of the initial misorientation between the digitized surfaces. The method provides important advantages for surface reconstruction and visualization, such as overlay of sequentially generated surfaces and accurate alignment of pairs of surfaces with small misalignment.

  17. 3D video

    CERN Document Server

    Lucas, Laurent; Loscos, Céline

    2013-01-01

    While 3D vision has existed for many years, the use of 3D cameras and video-based modeling by the film industry has induced an explosion of interest for 3D acquisition technology, 3D content and 3D displays. As such, 3D video has become one of the new technology trends of this century.The chapters in this book cover a large spectrum of areas connected to 3D video, which are presented both theoretically and technologically, while taking into account both physiological and perceptual aspects. Stepping away from traditional 3D vision, the authors, all currently involved in these areas, provide th

  18. Novel experimental technique for 3D investigation of high-speed cavitating diesel fuel flows by X-ray micro computed tomography

    Science.gov (United States)

    Lorenzi, M.; Mitroglou, N.; Santini, M.; Gavaises, M.

    2017-03-01

    An experimental technique for the estimation of the temporal-averaged vapour volume fraction within high-speed cavitating flow orifices is presented. The scientific instrument is designed to employ X-ray micro computed tomography (microCT) as a quantitative 3D measuring technique applied to custom designed, large-scale, orifice-type flow channels made from Polyether-ether-ketone (PEEK). The attenuation of the ionising electromagnetic radiation by the fluid under examination depends on its local density; the transmitted radiation through the cavitation volume is compared to the incident radiation, and combination of radiographies from sufficient number of angles leads to the reconstruction of attenuation coefficients versus the spatial position. This results to a 3D volume fraction distribution measurement of the developing multiphase flow. The experimental results obtained are compared against the high speed shadowgraph visualisation images obtained in an optically transparent nozzle with identical injection geometry; comparison between the temporal mean image and the microCT reconstruction shows excellent agreement. At the same time, the real 3D internal channel geometry (possibly eroded) has been measured and compared to the nominal manufacturing CAD drawing of the test nozzle.

  19. Use of high-resolution X-ray computed tomography and 3D image analysis to quantify mineral dissemination and pore space in oxide copper ore particles

    Science.gov (United States)

    Yang, Bao-hua; Wu, Ai-xiang; Narsilio, Guillermo A.; Miao, Xiu-xiu; Wu, Shu-yue

    2017-09-01

    Mineral dissemination and pore space distribution in ore particles are important features that influence heap leaching performance. To quantify the mineral dissemination and pore space distribution of an ore particle, a cylindrical copper oxide ore sample (ϕ4.6 mm × 5.6 mm) was scanned using high-resolution X-ray computed tomography (HRXCT), a nondestructive imaging technology, at a spatial resolution of 4.85 μm. Combined with three-dimensional (3D) image analysis techniques, the main mineral phases and pore space were segmented and the volume fraction of each phase was calculated. In addition, the mass fraction of each mineral phase was estimated and the result was validated with that obtained using traditional techniques. Furthermore, the pore phase features, including the pore size distribution, pore surface area, pore fractal dimension, pore centerline, and the pore connectivity, were investigated quantitatively. The pore space analysis results indicate that the pore size distribution closely fits a log-normal distribution and that the pore space morphology is complicated, with a large surface area and low connectivity. This study demonstrates that the combination of HRXCT and 3D image analysis is an effective tool for acquiring 3D mineralogical and pore structural data.

  20. The use of 3D computed tomography reconstruction in medico-legal testimony regarding injuries in living victims - Risks and benefits.

    Science.gov (United States)

    Borowska-Solonynko, Aleksandra; Solonynko, Bohdan

    2015-02-01

    Forensic pathologists are often called upon to determine the mechanism and severity of injuries in living individuals. Such expert testimony is often based solely on hand-written clinical notes. The victims' injuries may also be visualized via three-dimensional (3D) reconstruction of computed tomography (CT) images. This method has certain benefits but is not free from limitations. This paper presents two case reports. The first case is that of a female who was brought to the hospital with a knife thrust into her body. The prosecutor's questions focused on the wound channel. The information obtained from the patient's medical records was very general with many contradictory statements. A re-evaluation of the available CT scan data and a subsequent 3D reconstruction helped determine the exact course of the wound channel. The other case was that of a young male, hospitalized based on CT evidence of bilateral rib fractions, who claimed to have been assaulted by police officers. Court expert witnesses were already in possession of a 3D reconstruction showing symmetrical fractures of the patient's lower ribs with bone fragment displacement. An expert witness in radiology definitively excluded the presence of any actual fractures, and explained their apparent visibility in the three-dimensionally reconstructed image as a motion artifact. These two cases suggest that a professionally conducted 3D CT reconstruction is a very useful tool in providing expert testimony on injuries in living victims. However, the deceptive simplicity of conducting such a reconstruction may encourage inexperienced individuals to undertake it, and thus lead to erroneous conclusions. Copyright © 2014 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

  1. A computer-assisted 3D model for analyzing the aggregation of tumorigenic cells reveals specialized behaviors and unique cell types that facilitate aggregate coalescence.

    Directory of Open Access Journals (Sweden)

    Amanda Scherer

    Full Text Available We have developed a 4D computer-assisted reconstruction and motion analysis system, J3D-DIAS 4.1, and applied it to the reconstruction and motion analysis of tumorigenic cells in a 3D matrix. The system is unique in that it is fast, high-resolution, acquires optical sections using DIC microscopy (hence there is no associated photoxicity, and is capable of long-term 4D reconstruction. Specifically, a z-series at 5 μm increments can be acquired in less than a minute on tissue samples embedded in a 1.5 mm thick 3D Matrigel matrix. Reconstruction can be repeated at intervals as short as every minute and continued for 30 days or longer. Images are converted to mathematical representations from which quantitative parameters can be derived. Application of this system to cancer cells from established lines and fresh tumor tissue has revealed unique behaviors and cell types not present in non-tumorigenic lines. We report here that cells from tumorigenic lines and tumors undergo rapid coalescence in 3D, mediated by specific cell types that we have named "facilitators" and "probes." A third cell type, the "dervish", is capable of rapid movement through the gel and does not adhere to it. These cell types have never before been described. Our data suggest that tumorigenesis in vitro is a developmental process involving coalescence facilitated by specialized cells that culminates in large hollow spheres with complex architecture. The unique effects of select monoclonal antibodies on these processes demonstrate the usefulness of the model for analyzing the mechanisms of anti-cancer drugs.

  2. Computer-assisted 3D reconstruction of the terminal branches of the cerebral arteries. Pt. 1. Anterior cerebral artery

    Energy Technology Data Exchange (ETDEWEB)

    Gloger, S. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Gloger, A. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Vogt, H. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Kretschmann, H.J. (Dept. of Neuroanatomy, Hannover Medical School (Germany))

    1994-04-01

    We present a three-dimensional anatomical computer model of the terminal branches of the anterior cerebral artery, acquired from equidistant serial anatomical slices of three brains. The reconstructions provide a clear picture from all angles of the complicated course of the terminal branches of the cerebral arteries, which can help to identify them on conventional and magnetic resonance angiography. Our rendition of the cerebral arteries can also be matched with CT, MR or PET images to indicate the areas of extension of individual branches, allowing neuromorphological and functional correlation. (orig.)

  3. Computer-assisted 3D reconstruction of the terminal branches of th cerebral arteries. Pt. 2. Middle cerebral artery

    Energy Technology Data Exchange (ETDEWEB)

    Gloger, S. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Gloger, A. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Vogt, H. (Dept. of Neuroanatomy, Hannover Medical School (Germany)); Kretschmann, H.J. (Dept. of Neuroanatomy, Hannover Medical School (Germany))

    1994-04-01

    We present a three-dimensional anatomical computer model of the terminal branches of the middle cerebral artery, acquired from equidistant serial anatomical slices of three brains. The reconstructions provide a clear picture from all angles of the complicated course of the terminal branches of the cerebral arteries, which can help to identify them on conventional angiography and magnetic resonance angiography. The arteries can also be matched with CT, MR or PET images to indicate the areas of extension of individual branches, allowing neuromorphological and functional correlations. (orig.)

  4. Dental wear estimation using a digital intra-oral optical scanner and an automated 3D computer vision method.

    Science.gov (United States)

    Meireles, Agnes Batista; Vieira, Antonio Wilson; Corpas, Livia; Vandenberghe, Bart; Bastos, Flavia Souza; Lambrechts, Paul; Campos, Mario Montenegro; Las Casas, Estevam Barbosa de

    2016-01-01

    The objective of this work was to propose an automated and direct process to grade tooth wear intra-orally. Eight extracted teeth were etched with acid for different times to produce wear and scanned with an intra-oral optical scanner. Computer vision algorithms were used for alignment and comparison among models. Wear volume was estimated and visual scoring was achieved to determine reliability. Results demonstrated that it is possible to directly detect submillimeter differences in teeth surfaces with an automated method with results similar to those obtained by direct visual inspection. The investigated method proved to be reliable for comparison of measurements over time.

  5. Computational prediction of riboswitch tertiary structures including pseudoknots by RAGTOP: a hierarchical graph sampling approach.

    Science.gov (United States)

    Kim, Namhee; Zahran, Mai; Schlick, Tamar

    2015-01-01

    The modular organization of RNA structure has been exploited in various computational and theoretical approaches to identify RNA tertiary (3D) motifs and assemble RNA structures. Riboswitches exemplify this modularity in terms of both structural and functional adaptability of RNA components. Here, we extend our computational approach based on tree graph sampling to the prediction of riboswitch topologies by defining additional edges to mimick pseudoknots. Starting from a secondary (2D) structure, we construct an initial graph deduced from predicted junction topologies by our data-mining algorithm RNAJAG trained on known RNAs; we sample these graphs in 3D space guided by knowledge-based statistical potentials derived from bending and torsion measures of internal loops as well as radii of gyration for known RNAs. We present graph sampling results for 10 representative riboswitches, 6 of them with pseudoknots, and compare our predictions to solved structures based on global and local RMSD measures. Our results indicate that the helical arrangements in riboswitches can be approximated using our combination of modified 3D tree graph representations for pseudoknots, junction prediction, graph moves, and scoring functions. Future challenges in the field of riboswitch prediction and design are also discussed.

  6. Contrast-enhanced microwave imaging of breast tumors: a computational study using 3D realistic numerical phantoms

    Science.gov (United States)

    Shea, J. D.; Kosmas, P.; Van Veen, B. D.; Hagness, S. C.

    2010-07-01

    The detection of early-stage tumors in the breast by microwave imaging is challenged by both the moderate endogenous dielectric contrast between healthy and malignant glandular tissues and the spatial resolution available from illumination at microwave frequencies. The high endogenous dielectric contrast between adipose and fibroglandular tissue structures increases the difficulty of tumor detection due to the high dynamic range of the contrast function to be imaged and the low level of signal scattered from a tumor relative to the clutter scattered by normal tissue structures. Microwave inverse scattering techniques, used to estimate the complete spatial profile of the dielectric properties within the breast, have the potential to reconstruct both normal and cancerous tissue structures. However, the ill-posedness of the associated inverse problem often limits the frequency of microwave illumination to the UHF band within which early-stage cancers have sub-wavelength dimensions. In this computational study, we examine the reconstruction of small, compact tumors in three-dimensional numerical breast phantoms by a multiple-frequency inverse scattering solution. Computer models are also employed to investigate the use of exogenous contrast agents for enhancing tumor detection. Simulated array measurements are acquired before and after the introduction of the assumed contrast effects for two specific agents currently under consideration for breast imaging: microbubbles and carbon nanotubes. Differential images of the applied contrast demonstrate the potential of the approach for detecting the preferential uptake of contrast agents by malignant tissues.

  7. A non-CFD modeling system for computing 3D wind and concentration fields in urban environments

    Energy Technology Data Exchange (ETDEWEB)

    Nelson, Matthew A [Los Alamos National Laboratory; Brown, Michael J [Los Alamos National Laboratory; Williams, Michael D [Los Alamos National Laboratory; Gowardhan, Akshay [Los Alamos National Laboratory; Pardyjak, Eric R [UNIV OF UTAH

    2010-01-01

    The Quick Urban & Industrial Complex (QUIC) Dispersion Modeling System has been developed to rapidly compute the transport and dispersion of toxic agent releases in the vicinity of buildings. It is composed of an empirical-diagnostic wind solver, an 'urbanized' Lagrangian random-walk model, and a graphical user interface. The code has been used for homeland security and environmental air pollution applications. In this paper, we discuss the wind solver methodology and improvements made to the original Roeckle schemes in order to better capture flow fields in dense built-up areas. The mode1-computed wind and concentration fields are then compared to measurements from several field experiments. Improvements to the QUIC Dispersion Modeling System have been made to account for the inhomogeneous and complex building layouts found in large cities. The logic that has been introduced into the code is described and comparisons of model output to full-scale outdoor urban measurements in Oklahoma City and New York City are given. Although far from perfect, the model agreed fairly well with measurements and in many cases performed equally to CFD codes.

  8. Case series of 64 slice computed tomography-computed tomographic angiography with 3D reconstruction to diagnose symptomatic cerebral aneurysms: new standard of care?

    Directory of Open Access Journals (Sweden)

    Dietrich Jehle

    2012-02-01

    Full Text Available CT angiography (CTA has improved significantly over the past few years such that the reconstructed images of the cerebral arteries may now be equivalent to conventional digital angiography. The new technology of 64 slice multi-detector CTA can reconstruct detailed images that can reliably identify small cerebral aneurysms, even those <3mm. In addition, it is estimated that CT followed by lumbar puncture (LP misses up to 4% of symptomatic aneurysms. We present a series of cases that illustrates how CT followed by CTA may be replacing CT-LP as the standard of care in working up patients for symptomatic cerebral aneurysms and the importance of performing three dimensional (3D reconstructions. A series of seven cases of symptomatic cerebral aneurysms were identified that illustrate the sensitivity of CT-CTA versus CT-LP and the importance of 3D reconstruction in identifying these aneurysms. Surgical treatment was recommended for 6 of the 7 patients with aneurysms and strict hypertension control was recommended for the seventh patient. Some of these patients demonstrated subarachnoid hemorrhage on presentation while others had negative LPs. A number of these patients with negative LPs were clearly symptomatic from their aneurysms. At least one of these cerebral aneurysms was not apparent on CTA without 3D reconstruction. 3D reconstruction of CTA is crucial to adequately identify cerebral aneurysms. This case series helps reinforce the importance of 3D reconstruction. There is some data to suggest that 64 slice CT-CTA may be equivalent or superior to CT-LP in the detection of symptomatic cerebral aneurysms.

  9. Role of volume rendered 3-D computed tomography in conservative management of trauma-related thoracic injuries.

    LENUS (Irish Health Repository)

    OʼLeary, Donal Peter

    2012-09-01

    Pneumatic nail guns are a tool used commonly in the construction industry and are widely available. Accidental injuries from nail guns are common, and several cases of suicide using a nail gun have been reported. Computed tomographic (CT) imaging, together with echocardiography, has been shown to be the gold standard for investigation of these cases. We present a case of a 55-year-old man who presented to the accident and emergency unit of a community hospital following an accidental pneumatic nail gun injury to his thorax. Volume-rendered CT of the thorax allowed an accurate assessment of the thoracic injuries sustained by this patient. As there was no evidence of any acute life-threatening injury, a sternotomy was avoided and the patient was observed closely until discharge. In conclusion, volume-rendered 3-dimensional CT can greatly help in the decision to avoid an unnecessary sternotomy in patients with a thoracic nail gun injury.

  10. Computer-assisted three-dimensional surgical planing and simulation. 3D soft tissue planning and prediction.

    Science.gov (United States)

    Xia, J; Samman, N; Yeung, R W; Wang, D; Shen, S G; Ip, H H; Tideman, H

    2000-08-01

    The purpose of this paper is to report a new technique for three-dimensional facial soft-tissue-change prediction after simulated orthognathic surgical planning. A scheme for soft tissue deformation, "Computer-assisted three-dimensional virtual reality soft tissue planning and prediction for orthognathic surgery (CASP)", is presented. The surgical planning was based on three-dimensional reconstructed CT visualization. Soft tissue changes were predicted by two newly devised algorithms: Surface Normal-based Model Deformation Algorithm and Ray Projection-based Model Deformation Algorithm. A three-dimensional color facial texture-mapping technique was also used for generating the color photo-realistic facial model. As a final result, a predicted and simulated patient's color facial model can be visualized from arbitrary viewing points.

  11. Quantifying Hyporheic Exchanges in a Large Scale River Reach Using Coupled 3-D Surface and Subsurface Computational Fluid Dynamics Simulations

    Science.gov (United States)

    Bao, J.; Zhou, T.; Huang, M.; Hou, Z.; Perkins, W. A.; Harding, S.; Hammond, G. E.; Ren, H.; Thorne, P. D.; Suffield, S. R.; Zachara, J. M.

    2016-12-01

    Hyporheic exchange between river water and groundwater is an important mechanism for biogeochemical processes, such as carbon and nitrogen cycling, and biodegradation of organic contaminants, in the subsurface interaction zone. The relationship between river flow conditions and hyporheic exchanges therefore is of great interests to hydrologists, biogeochemists, and ecologists. However, quantifying relative influences of hydrostatic and hydrodynamic drivers on hyporheic exchanges is very challenging in large rivers due to accessibility and spatial coverage of measurements, and computational tools available for numerical experiments. In this study, we aim to demonstrate that a high resolution computational fluid dynamics (CFD) model that couples surface and subsurface flow and transport can be used to simulate hyporheic exchanges and the residence time of river water in the hypothetic zone. Base on the assumption that the hyporheic exchange does not affect the surface water flow condition due to its small magnitude compared to the velocity of river water, we developed a one way coupled surface and subsurface water flow model in a commercial CFD software STAR-CCM+, that connects the Reynolds-averaged Navier-Stokes (RANS) equation solver with a realizable two-layer turbulence model, a two-layer all y+ wall treatment, and the volume of fluid (VOF) method for tracking the free water-air interface as well as porous media flow in the subsurface domain. The model is applied to a 7-km long section of the Columbia River and validated against measurements from the acoustic Doppler current profiler (ADCP) in the surface water and hyporheic fluxes derived from a set of temperature profilers installed across the riverbed. The validated model is then employed to systematically investigate how hyporheic exchanges influenced by 1) riverbed properties such as the permeability and thickness of the alluvial layer; 2) surface water hydrodynamics due to channel geomorphological settings

  12. Using 3D in Visualization

    DEFF Research Database (Denmark)

    Wood, Jo; Kirschenbauer, Sabine; Döllner, Jürgen

    2005-01-01

    The notion of three-dimensionality is applied to five stages of the visualization pipeline. While 3D visulization is most often associated with the visual mapping and representation of data, this chapter also identifies its role in the management and assembly of data, and in the media used...... to display 3D imagery. The extra cartographic degree of freedom offered by using 3D is explored and offered as a motivation for employing 3D in visualization. The use of VR and the construction of virtual environments exploit navigational and behavioral realism, but become most usefil when combined...... with abstracted representations embedded in a 3D space. The interactions between development of geovisualization, the technology used to implement it and the theory surrounding cartographic representation are explored. The dominance of computing technologies, driven particularly by the gaming industry...

  13. 3D printing in dentistry.

    Science.gov (United States)

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.

  14. 3D Building Model Hierarchical Generalization Based on Building Contour and Texture%基于房屋轮廓与纹理的三维建筑模型分层次聚类研究

    Institute of Scientific and Technical Information of China (English)

    潘文斌; 刘坡; 周洁萍; 龚建华

    2016-01-01

    cognition-based hierarchical clustering algorithm is proposed. Firstly, a constrained Delaunay triangulation (CDT) is constructed from the 2D footprints of building models, and a connected network is established by visibility analysis based on the CDT, which is divided based on the road network to make it conform to the urban morphology theory. An initial proximity graph is constructed from the CDT. Secondly, the proximity graph is segmented according to the texture feature. Finally, a minimum spanning tree (MST) is creat-ed from the proximity graphic based on the minimum distance, and after linear detection and discrete model conflation, the model groups are conflated and visualized. The texture feature is used to synthesize 3D model that is adaptive to people's cognitive habits. The experimental results confirm the effectiveness of this method.

  15. A fractal approach to the dark silicon problem: A comparison of 3D computer architectures - Standard slices versus fractal Menger sponge geometry

    Science.gov (United States)

    Herrmann, Richard

    2015-01-01

    The dark silicon problem, which limits the power-growth of future computer generations, is interpreted as a heat energy transport problem when increasing the energy emitting surface area within a given volume. A comparison of two 3D-configuration models, namely a standard slicing and a fractal surface generation within the Menger sponge geometry is presented. It is shown, that for iteration orders $n>3$ the fractal model shows increasingly better thermal behavior. As a consequence cooling problems may be minimized by using a fractal architecture. Therefore the Menger sponge geometry is a good example for fractal architectures applicable not only in computer science, but also e.g. in chemistry when building chemical reactors, optimizing catalytic processes or in sensor construction technology building highly effective sensors for toxic gases or water analysis.

  16. Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies

    Directory of Open Access Journals (Sweden)

    Stegmaier Philip

    2010-05-01

    Full Text Available Abstract Background Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription factors in the literature, however, for many of them the corresponding DNA-binding motifs remain uncharacterized. Results The position weight matrices (PWMs of transcription factors from different structural classes have been determined using a knowledge-based statistical potential. The scoring function calibrated against crystallographic data on protein-DNA contacts recovered PWMs of various members of widely studied transcription factor families such as p53 and NF-κB. Where it was possible, extensive comparison to experimental binding affinity data and other physical models was made. Although the p50p50, p50RelB, and p50p65 dimers belong to the same family, particular differences in their PWMs were detected, thereby suggesting possibly different in vivo binding modes. The PWMs of p63 and p73 were computed on the basis of homology modeling and their performance was studied using upstream sequences of 85 p53/p73-regulated human genes. Interestingly, about half of the p63 and p73 hits reported by the Match algorithm in the altogether 126 promoters lay more than 2 kb upstream of the corresponding transcription start sites, which deviates from the common assumption that most regulatory sites are located more proximal to the TSS. The fact that in most of the cases the binding sites of p63 and p73 did not overlap with the p53 sites suggests that p63 and p73 could influence the p53 transcriptional activity cooperatively. The newly computed p50p50 PWM recovered 5 more experimental binding sites than the corresponding TRANSFAC matrix, while both PWMs showed comparable receiver operator characteristics. Conclusions A novel algorithm was developed to calculate position weight matrices from protein-DNA complex structures. The proposed algorithm was extensively validated

  17. Clinical feasibility of 3D automated coronary atherosclerotic plaque quantification algorithm on coronary computed tomography angiography: Comparison with intravascular ultrasound

    Energy Technology Data Exchange (ETDEWEB)

    Park, Hyung-Bok [Yonsei University Health System, Yonsei-Cedar Sinai Integrative Cardiovascular Imaging Research Center, Seoul (Korea, Republic of); Myongji Hospital, Division of Cardiology, Cardiovascular Center, Goyang (Korea, Republic of); Lee, Byoung Kwon [Yonsei University College of Medicine, Division of Cardiology, Gangnam Severance Hospital, Seoul (Korea, Republic of); Shin, Sanghoon [Yonsei University Health System, Yonsei-Cedar Sinai Integrative Cardiovascular Imaging Research Center, Seoul (Korea, Republic of); National Health Insurance Corporation Ilsan Hospital, Division of Cardiology, Goyang (Korea, Republic of); Heo, Ran; Chang, Hyuk-Jae; Chung, Namsik [Yonsei University Health System, Yonsei-Cedar Sinai Integrative Cardiovascular Imaging Research Center, Seoul (Korea, Republic of); Yonsei University Health System, Division of Cardiology, Severance Cardiovascular Hospital, Seoul (Korea, Republic of); Arsanjani, Reza [Cedars-Sinai Medical Center, Departments of Imaging and Medicine, Cedars-Sinai Heart Institute, Los Angeles, CA (United States); Kitslaar, Pieter H. [Leiden University Medical Center, Department of Radiology, Division of Image Processing, Leiden (Netherlands); Medis medical Imaging Systems B.V., Leiden (Netherlands); Broersen, Alexander; Dijkstra, Jouke [Leiden University Medical Center, Department of Radiology, Division of Image Processing, Leiden (Netherlands); Ahn, Sung Gyun [Yonsei University Wonju Severance Christian Hospital, Division of Cardiology, Wonju (Korea, Republic of); Min, James K. [New York-Presbyterian Hospital, Institute for Cardiovascular Imaging, Weill-Cornell Medical College, New York, NY (United States); Hong, Myeong-Ki; Jang, Yangsoo [Yonsei University Health System, Division of Cardiology, Severance Cardiovascular Hospital, Seoul (Korea, Republic of)

    2015-10-15

    To evaluate the diagnostic performance of automated coronary atherosclerotic plaque quantification (QCT) by different users (expert/non-expert/automatic). One hundred fifty coronary artery segments from 142 patients who underwent coronary computed tomography angiography (CCTA) and intravascular ultrasound (IVUS) were analyzed. Minimal lumen area (MLA), maximal lumen area stenosis percentage (%AS), mean plaque burden percentage (%PB), and plaque volume were measured semi-automatically by expert, non-expert, and fully automatic QCT analyses, and then compared to IVUS. Between IVUS and expert QCT analysis, the correlation coefficients (r) for the MLA, %AS, %PB, and plaque volume were excellent: 0.89 (p < 0.001), 0.84 (p < 0.001), 0.91 (p < 0.001), and 0.94 (p < 0.001), respectively. There were no significant differences in the mean parameters (all p values >0.05) except %AS (p = 0.01). The automatic QCT analysis showed comparable performance to non-expert QCT analysis, showing correlation coefficients (r) of the MLA (0.80 vs. 0.82), %AS (0.82 vs. 0.80), %PB (0.84 vs. 0.73), and plaque volume (0.84 vs. 0.79) when they were compared to IVUS, respectively. Fully automatic QCT analysis showed clinical utility compared with IVUS, as well as a compelling performance when compared with semiautomatic analyses. (orig.)

  18. 3D algebraic iterative reconstruction for cone-beam x-ray differential phase-contrast computed tomography.

    Science.gov (United States)

    Fu, Jian; Hu, Xinhua; Velroyen, Astrid; Bech, Martin; Jiang, Ming; Pfeiffer, Franz

    2015-01-01

    Due to the potential of compact imaging systems with magnified spatial resolution and contrast, cone-beam x-ray differential phase-contrast computed tomography (DPC-CT) has attracted significant interest. The current proposed FDK reconstruction algorithm with the Hilbert imaginary filter will induce severe cone-beam artifacts when the cone-beam angle becomes large. In this paper, we propose an algebraic iterative reconstruction (AIR) method for cone-beam DPC-CT and report its experiment results. This approach considers the reconstruction process as the optimization of a discrete representation of the object function to satisfy a system of equations that describes the cone-beam DPC-CT imaging modality. Unlike the conventional iterative algorithms for absorption-based CT, it involves the derivative operation to the forward projections of the reconstructed intermediate image to take into account the differential nature of the DPC projections. This method is based on the algebraic reconstruction technique, reconstructs the image ray by ray, and is expected to provide better derivative estimates in iterations. This work comprises a numerical study of the algorithm and its experimental verification using a dataset measured with a three-grating interferometer and a mini-focus x-ray tube source. It is shown that the proposed method can reduce the cone-beam artifacts and performs better than FDK under large cone-beam angles. This algorithm is of interest for future cone-beam DPC-CT applications.

  19. Comparative evaluation of the accuracy of linear measurements between cone beam computed tomography and 3D microtomography

    Directory of Open Access Journals (Sweden)

    Francesca Mangione

    2013-09-01

    Full Text Available OBJECTIVE: The aim of this study was to evaluate the influence of artifacts on the accuracy of linear measurements estimated with a common cone beam computed tomography (CBCT system used in dental clinical practice, by comparing it with microCT system as standard reference. MATERIALS AND METHODS: Ten bovine bone cylindrical samples containing one implant each, able to provide both points of reference and image quality degradation, have been scanned by CBCT and microCT systems. Thanks to the software of the two systems, for each cylindrical sample, two diameters taken at different levels, by using implants different points as references, have been measured. Results have been analyzed by ANOVA and a significant statistically difference has been found. RESULTS AND DISCUSSION: Due to the obtained results, in this work it is possible to say that the measurements made with the two different instruments are still not statistically comparable, although in some samples were obtained similar performances and therefore not statistically significant. CONCLUSION: With the improvement of the hardware and software of CBCT systems, in the near future the two instruments will be able to provide similar performances.

  20. Virtual forensic entomology: improving estimates of minimum post-mortem interval with 3D micro-computed tomography.

    Science.gov (United States)

    Richards, Cameron S; Simonsen, Thomas J; Abel, Richard L; Hall, Martin J R; Schwyn, Daniel A; Wicklein, Martina

    2012-07-10

    We demonstrate how micro-computed tomography (micro-CT) can be a powerful tool for describing internal and external morphological changes in Calliphora vicina (Diptera: Calliphoridae) during metamorphosis. Pupae were sampled during the 1st, 2nd, 3rd and 4th quarter of development after the onset of pupariation at 23 °C, and placed directly into 80% ethanol for preservation. In order to find the optimal contrast, four batches of pupae were treated differently: batch one was stained in 0.5M aqueous iodine for 1 day; two for 7 days; three was tagged with a radiopaque dye; four was left unstained (control). Pupae stained for 7d in iodine resulted in the best contrast micro-CT scans. The scans were of sufficiently high spatial resolution (17.2 μm) to visualise the internal morphology of developing pharate adults at all four ages. A combination of external and internal morphological characters was shown to have the potential to estimate the age of blowfly pupae with a higher degree of accuracy and precision than using external morphological characters alone. Age specific developmental characters are described. The technique could be used as a measure to estimate a minimum post-mortem interval in cases of suspicious death where pupae are the oldest stages of insect evidence collected.

  1. Regional seismic wavefield computation on a 3-D heterogeneous Earth model by means of coupled traveling wave synthesis

    Science.gov (United States)

    Pollitz, F.F.

    2002-01-01

    I present a new algorithm for calculating seismic wave propagation through a three-dimensional heterogeneous medium using the framework of mode coupling theory originally developed to perform very low frequency (f seismic wavefield computation. It is a Greens function approach for multiple scattering within a defined volume and employs a truncated traveling wave basis set using the locked mode approximation. Interactions between incident and scattered wavefields are prescribed by mode coupling theory and account for the coupling among surface waves, body waves, and evanescent waves. The described algorithm is, in principle, applicable to global and regional wave propagation problems, but I focus on higher frequency (typically f ??????0.25 Hz) applications at regional and local distances where the locked mode approximation is best utilized and which involve wavefields strongly shaped by propagation through a highly heterogeneous crust. Synthetic examples are shown for P-SV-wave propagation through a semi-ellipsoidal basin and SH-wave propagation through a fault zone.

  2. 3D Computation of Hydrogen-Fueled Combustion around Turbine Blade-Effect of Arrangement of Injector Holes -

    Institute of Scientific and Technical Information of China (English)

    Makoto YAMAMOTO; Junichi IKEDA; Kazuaki INABA

    2006-01-01

    Recently, a number of environmental problems caused from fossil fuel combustion have been focused on. In addition, with the eventual depletion of fossil energy resources, hydrogen gas is expected to be an alternative energy resource in the near future. It is characterized by high energy per unit weight, high reaction rate, wide range of flammability and the low emission property. On the other hand, many researches have been underway in several countries to improve a propulsion system for an advanced aircraft. The system is required to have higher power, lighter weight and lower emissions than existing ones. In such a future propulsion system, hydrogen gas would be one of the promising fuels for realizing the requirements. Considering these backgrounds, our group has proposed a new cycle concept for hydrogen-fueled aircraft propulsion system. In the present study, we perform 3dimensional computations of turbulent flow fields with hydrogen-fueled combustion around a turbine blade. The main objective is to clarify the influence of arrangement of hydrogen injector holes. Changing the chordwise and spanwise spacings of the holes, the 3 dimensional nature of the flow and thermal fields is numerically studied.

  3. Neural mechanisms underlying the computation of hierarchical tree structures in mathematics.

    Directory of Open Access Journals (Sweden)

    Tomoya Nakai

    Full Text Available Whether mathematical and linguistic processes share the same neural mechanisms has been a matter of controversy. By examining various sentence structures, we recently demonstrated that activations in the left inferior frontal gyrus (L. IFG and left supramarginal gyrus (L. SMG were modulated by the Degree of Merger (DoM, a measure for the complexity of tree structures. In the present study, we hypothesize that the DoM is also critical in mathematical calculations, and clarify whether the DoM in the hierarchical tree structures modulates activations in these regions. We tested an arithmetic task that involved linear and quadratic sequences with recursive computation. Using functional magnetic resonance imaging, we found significant activation in the L. IFG, L. SMG, bilateral intraparietal sulcus (IPS, and precuneus selectively among the tested conditions. We also confirmed that activations in the L. IFG and L. SMG were free from memory-related factors, and that activations in the bilateral IPS and precuneus were independent from other possible factors. Moreover, by fitting parametric models of eight factors, we found that the model of DoM in the hierarchical tree structures was the best to explain the modulation of activations in these five regions. Using dynamic causal modeling, we showed that the model with a modulatory effect for the connection from the L. IPS to the L. IFG, and with driving inputs into the L. IFG, was highly probable. The intrinsic, i.e., task-independent, connection from the L. IFG to the L. IPS, as well as that from the L. IPS to the R. IPS, would provide a feedforward signal, together with negative feedback connections. We indicate that mathematics and language share the network of the L. IFG and L. IPS/SMG for the computation of hierarchical tree structures, and that mathematics recruits the additional network of the L. IPS and R. IPS.

  4. Neural mechanisms underlying the computation of hierarchical tree structures in mathematics.

    Science.gov (United States)

    Nakai, Tomoya; Sakai, Kuniyoshi L

    2014-01-01

    Whether mathematical and linguistic processes share the same neural mechanisms has been a matter of controversy. By examining various sentence structures, we recently demonstrated that activations in the left inferior frontal gyrus (L. IFG) and left supramarginal gyrus (L. SMG) were modulated by the Degree of Merger (DoM), a measure for the complexity of tree structures. In the present study, we hypothesize that the DoM is also critical in mathematical calculations, and clarify whether the DoM in the hierarchical tree structures modulates activations in these regions. We tested an arithmetic task that involved linear and quadratic sequences with recursive computation. Using functional magnetic resonance imaging, we found significant activation in the L. IFG, L. SMG, bilateral intraparietal sulcus (IPS), and precuneus selectively among the tested conditions. We also confirmed that activations in the L. IFG and L. SMG were free from memory-related factors, and that activations in the bilateral IPS and precuneus were independent from other possible factors. Moreover, by fitting parametric models of eight factors, we found that the model of DoM in the hierarchical tree structures was the best to explain the modulation of activations in these five regions. Using dynamic causal modeling, we showed that the model with a modulatory effect for the connection from the L. IPS to the L. IFG, and with driving inputs into the L. IFG, was highly probable. The intrinsic, i.e., task-independent, connection from the L. IFG to the L. IPS, as well as that from the L. IPS to the R. IPS, would provide a feedforward signal, together with negative feedback connections. We indicate that mathematics and language share the network of the L. IFG and L. IPS/SMG for the computation of hierarchical tree structures, and that mathematics recruits the additional network of the L. IPS and R. IPS.

  5. Neural Mechanisms Underlying the Computation of Hierarchical Tree Structures in Mathematics

    Science.gov (United States)

    Nakai, Tomoya; Sakai, Kuniyoshi L.

    2014-01-01

    Whether mathematical and linguistic processes share the same neural mechanisms has been a matter of controversy. By examining various sentence structures, we recently demonstrated that activations in the left inferior frontal gyrus (L. IFG) and left supramarginal gyrus (L. SMG) were modulated by the Degree of Merger (DoM), a measure for the complexity of tree structures. In the present study, we hypothesize that the DoM is also critical in mathematical calculations, and clarify whether the DoM in the hierarchical tree structures modulates activations in these regions. We tested an arith