WorldWideScience

Sample records for 3d datasets comparison

  1. Comparison of global 3-D aviation emissions datasets

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    S. C. Olsen

    2013-01-01

    Full Text Available Aviation emissions are unique from other transportation emissions, e.g., from road transportation and shipping, in that they occur at higher altitudes as well as at the surface. Aviation emissions of carbon dioxide, soot, and water vapor have direct radiative impacts on the Earth's climate system while emissions of nitrogen oxides (NOx, sulfur oxides, carbon monoxide (CO, and hydrocarbons (HC impact air quality and climate through their effects on ozone, methane, and clouds. The most accurate estimates of the impact of aviation on air quality and climate utilize three-dimensional chemistry-climate models and gridded four dimensional (space and time aviation emissions datasets. We compare five available aviation emissions datasets currently and historically used to evaluate the impact of aviation on climate and air quality: NASA-Boeing 1992, NASA-Boeing 1999, QUANTIFY 2000, Aero2k 2002, and AEDT 2006 and aviation fuel usage estimates from the International Energy Agency. Roughly 90% of all aviation emissions are in the Northern Hemisphere and nearly 60% of all fuelburn and NOx emissions occur at cruise altitudes in the Northern Hemisphere. While these datasets were created by independent methods and are thus not strictly suitable for analyzing trends they suggest that commercial aviation fuelburn and NOx emissions increased over the last two decades while HC emissions likely decreased and CO emissions did not change significantly. The bottom-up estimates compared here are consistently lower than International Energy Agency fuelburn statistics although the gap is significantly smaller in the more recent datasets. Overall the emissions distributions are quite similar for fuelburn and NOx with regional peaks over the populated land masses of North America, Europe, and East Asia. For CO and HC there are relatively larger differences. There are however some distinct differences in the altitude distribution

  2. Comparison of global 3-D aviation emissions datasets

    Directory of Open Access Journals (Sweden)

    S. C. Olsen

    2012-07-01

    Full Text Available Aviation emissions are unique from other transportation emissions, e.g., from road transportation and shipping, in that they occur at higher altitudes as well as at the surface. Aviation emissions of carbon dioxide, soot, and water vapor have direct radiative impacts on the Earth's climate system while emissions of nitrogen oxides (NOx, sulfur oxides, carbon monoxide (CO, and hydrocarbons (HC impact air quality and climate through their effects on ozone, methane, and clouds. The most accurate estimates of the impact of aviation on air quality and climate utilize three-dimensional chemistry-climate models and gridded four dimensional (space and time aviation emissions datasets. We compare five available aviation emissions datasets currently and historically used to evaluate the impact of aviation on climate and air quality: NASA-Boeing 1992, NASA-Boeing 1999, QUANTIFY 2000, Aero2k 2002, and AEDT 2006 and aviation fuel usage estimates from the International Energy Agency. Roughly 90% of all aviation emissions are in the Northern Hemisphere and nearly 60% of all fuelburn and NOx emissions occur at cruise altitudes in the Northern Hemisphere. While these datasets were created by independent methods and are thus not strictly suitable for analyzing trends they suggest that commercial aviation fuelburn and NOx emissions increased over the last two decades while HC emissions likely decreased and CO emissions did not change significantly. The bottom-up estimates compared here are consistently lower than International Energy Agency fuelburn statistics although the gap is significantly lower in the more recent datasets. Overall the emissions distributions are quite similar for fuelburn and NOx while for CO and HC there are relatively larger differences. There are however some distinct differences in the altitude distribution of emissions in certain regions for the Aero2k dataset.

  3. 3DSEM: A 3D microscopy dataset.

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    Tafti, Ahmad P; Kirkpatrick, Andrew B; Holz, Jessica D; Owen, Heather A; Yu, Zeyun

    2016-03-01

    The Scanning Electron Microscope (SEM) as a 2D imaging instrument has been widely used in many scientific disciplines including biological, mechanical, and materials sciences to determine the surface attributes of microscopic objects. However the SEM micrographs still remain 2D images. To effectively measure and visualize the surface properties, we need to truly restore the 3D shape model from 2D SEM images. Having 3D surfaces would provide anatomic shape of micro-samples which allows for quantitative measurements and informative visualization of the specimens being investigated. The 3DSEM is a dataset for 3D microscopy vision which is freely available at [1] for any academic, educational, and research purposes. The dataset includes both 2D images and 3D reconstructed surfaces of several real microscopic samples. PMID:26779561

  4. 3DSEM: A 3D microscopy dataset

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    Ahmad P. Tafti

    2016-03-01

    Full Text Available The Scanning Electron Microscope (SEM as a 2D imaging instrument has been widely used in many scientific disciplines including biological, mechanical, and materials sciences to determine the surface attributes of microscopic objects. However the SEM micrographs still remain 2D images. To effectively measure and visualize the surface properties, we need to truly restore the 3D shape model from 2D SEM images. Having 3D surfaces would provide anatomic shape of micro-samples which allows for quantitative measurements and informative visualization of the specimens being investigated. The 3DSEM is a dataset for 3D microscopy vision which is freely available at [1] for any academic, educational, and research purposes. The dataset includes both 2D images and 3D reconstructed surfaces of several real microscopic samples.

  5. Lifting Object Detection Datasets into 3D.

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    Carreira, Joao; Vicente, Sara; Agapito, Lourdes; Batista, Jorge

    2016-07-01

    While data has certainly taken the center stage in computer vision in recent years, it can still be difficult to obtain in certain scenarios. In particular, acquiring ground truth 3D shapes of objects pictured in 2D images remains a challenging feat and this has hampered progress in recognition-based object reconstruction from a single image. Here we propose to bypass previous solutions such as 3D scanning or manual design, that scale poorly, and instead populate object category detection datasets semi-automatically with dense, per-object 3D reconstructions, bootstrapped from:(i) class labels, (ii) ground truth figure-ground segmentations and (iii) a small set of keypoint annotations. Our proposed algorithm first estimates camera viewpoint using rigid structure-from-motion and then reconstructs object shapes by optimizing over visual hull proposals guided by loose within-class shape similarity assumptions. The visual hull sampling process attempts to intersect an object's projection cone with the cones of minimal subsets of other similar objects among those pictured from certain vantage points. We show that our method is able to produce convincing per-object 3D reconstructions and to accurately estimate cameras viewpoints on one of the most challenging existing object-category detection datasets, PASCAL VOC. We hope that our results will re-stimulate interest on joint object recognition and 3D reconstruction from a single image. PMID:27295458

  6. The interactive presentation of 3D information obtained from reconstructed datasets and 3D placement of single histological sections with the 3D portable document format

    NARCIS (Netherlands)

    B.A. de Boer; A.T. Soufan; J. Hagoort; T.J. Mohun; M.J.B. van den Hoff; A. Hasman; F.P.J.M. Voorbraak; A.F.M. Moorman; J.M. Ruijter

    2011-01-01

    Interpretation of the results of anatomical and embryological studies relies heavily on proper visualization of complex morphogenetic processes and patterns of gene expression in a three-dimensional (3D) context. However, reconstruction of complete 3D datasets is time consuming and often researchers

  7. The interactive presentation of 3D information obtained from reconstructed datasets and 3D placement of single histological sections with the 3D portable document format

    OpenAIRE

    de Boer, B. A.; Soufan, A. T.; Hagoort, J.; Mohun, T. J.; van den Hoff, M. J. B.; Hasman, A.; Voorbraak, F. P. J. M.; Moorman, A. F. M.; Ruijter, J.M.

    2011-01-01

    Interpretation of the results of anatomical and embryological studies relies heavily on proper visualization of complex morphogenetic processes and patterns of gene expression in a three-dimensional (3D) context. However, reconstruction of complete 3D datasets is time consuming and often researchers study only a few sections. To help in understanding the resulting 2D data we developed a program (TRACTS) that places such arbitrary histological sections into a high-resolution 3D model of the de...

  8. Ultrafast superpixel segmentation of large 3D medical datasets

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    Leblond, Antoine; Kauffmann, Claude

    2016-03-01

    Even with recent hardware improvements, superpixel segmentation of large 3D medical images at interactive speed (cohesive, the fast Thread Group Shared Memory can be used and reused through a Gauss-Seidel like acceleration. The work unit partitioning scheme will however vary on odd- and even-numbered iterations to reduce convergence barriers. Synchronization will be ensured by an 8-step 3D variant of the traditional Red Black Ordering scheme. An attack model and early termination will also be described and implemented as additional acceleration techniques. Using our hybrid framework and typical operating parameters, we were able to compute the superpixels of a high-resolution 512x512x512 aortic angioCT scan in 283 ms using a AMD R9 290X GPU. We achieved a 22.3X speed-up factor compared to the published reference GPU implementation.

  9. Ultrafast superpixel segmentation of large 3D medical datasets

    Science.gov (United States)

    Leblond, Antoine; Kauffmann, Claude

    2016-03-01

    Even with recent hardware improvements, superpixel segmentation of large 3D medical images at interactive speed (<500 ms) remains a challenge. We will describe methods to achieve such performances using a GPU based hybrid framework implementing wavefront propagation and cellular automata resolution. Tasks will be scheduled in blocks (work units) using a wavefront propagation strategy, therefore allowing sparse scheduling. Because work units has been designed as spatially cohesive, the fast Thread Group Shared Memory can be used and reused through a Gauss-Seidel like acceleration. The work unit partitioning scheme will however vary on odd- and even-numbered iterations to reduce convergence barriers. Synchronization will be ensured by an 8-step 3D variant of the traditional Red Black Ordering scheme. An attack model and early termination will also be described and implemented as additional acceleration techniques. Using our hybrid framework and typical operating parameters, we were able to compute the superpixels of a high-resolution 512x512x512 aortic angioCT scan in 283 ms using a AMD R9 290X GPU. We achieved a 22.3X speed-up factor compared to the published reference GPU implementation.

  10. Efficient segmentation of 3D fluoroscopic datasets from mobile C-arm

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    Styner, Martin A.; Talib, Haydar; Singh, Digvijay; Nolte, Lutz-Peter

    2004-05-01

    The emerging mobile fluoroscopic 3D technology linked with a navigation system combines the advantages of CT-based and C-arm-based navigation. The intra-operative, automatic segmentation of 3D fluoroscopy datasets enables the combined visualization of surgical instruments and anatomical structures for enhanced planning, surgical eye-navigation and landmark digitization. We performed a thorough evaluation of several segmentation algorithms using a large set of data from different anatomical regions and man-made phantom objects. The analyzed segmentation methods include automatic thresholding, morphological operations, an adapted region growing method and an implicit 3D geodesic snake method. In regard to computational efficiency, all methods performed within acceptable limits on a standard Desktop PC (30sec-5min). In general, the best results were obtained with datasets from long bones, followed by extremities. The segmentations of spine, pelvis and shoulder datasets were generally of poorer quality. As expected, the threshold-based methods produced the worst results. The combined thresholding and morphological operations methods were considered appropriate for a smaller set of clean images. The region growing method performed generally much better in regard to computational efficiency and segmentation correctness, especially for datasets of joints, and lumbar and cervical spine regions. The less efficient implicit snake method was able to additionally remove wrongly segmented skin tissue regions. This study presents a step towards efficient intra-operative segmentation of 3D fluoroscopy datasets, but there is room for improvement. Next, we plan to study model-based approaches for datasets from the knee and hip joint region, which would be thenceforth applied to all anatomical regions in our continuing development of an ideal segmentation procedure for 3D fluoroscopic images.

  11. 3D Printing of CT Dataset: Validation of an Open Source and Consumer-Available Workflow.

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    Bortolotto, Chandra; Eshja, Esmeralda; Peroni, Caterina; Orlandi, Matteo A; Bizzotto, Nicola; Poggi, Paolo

    2016-02-01

    The broad availability of cheap three-dimensional (3D) printing equipment has raised the need for a thorough analysis on its effects on clinical accuracy. Our aim is to determine whether the accuracy of 3D printing process is affected by the use of a low-budget workflow based on open source software and consumer's commercially available 3D printers. A group of test objects was scanned with a 64-slice computed tomography (CT) in order to build their 3D copies. CT datasets were elaborated using a software chain based on three free and open source software. Objects were printed out with a commercially available 3D printer. Both the 3D copies and the test objects were measured using a digital professional caliper. Overall, the objects' mean absolute difference between test objects and 3D copies is 0.23 mm and the mean relative difference amounts to 0.55 %. Our results demonstrate that the accuracy of 3D printing process remains high despite the use of a low-budget workflow.

  12. Thingi10K: A Dataset of 10,000 3D-Printing Models

    OpenAIRE

    Qingnan ZHOU; Jacobson, Alec

    2016-01-01

    Empirically validating new 3D-printing related algorithms and implementations requires testing data representative of inputs encountered \\emph{in the wild}. An ideal benchmarking dataset should not only draw from the same distribution of shapes people print in terms of class (e.g., toys, mechanisms, jewelry), representation type (e.g., triangle soup meshes) and complexity (e.g., number of facets), but should also capture problems and artifacts endemic to 3D printing models (e.g., self-interse...

  13. MR neurography with multiplanar reconstruction of 3D MRI datasets: an anatomical study and clinical applications

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    Freund, Wolfgang; Aschoff, Andrik J.; Stuber, Gregor; Schmitz, Bernd [University Hospitals Ulm, Clinic for Diagnostic and Interventional Radiology, Ulm (Germany); Brinkmann, Alexander; Wagner, Florian; Dinse, Alexander [University Hospitals Ulm, Department of Anesthesiology, Ulm (Germany)

    2007-04-15

    Extracranial MR neurography has so far mainly been used with 2D datasets. We investigated the use of 3D datasets for peripheral neurography of the sciatic nerve. A total of 40 thighs (20 healthy volunteers) were examined with a coronally oriented magnetization-prepared rapid acquisition gradient echo sequence with isotropic voxels of 1 x 1 x 1 mm and a field of view of 500 mm. Anatomical landmarks were palpated and marked with MRI markers. After MR scanning, the sciatic nerve was identified by two readers independently in the resulting 3D dataset. In every volunteer, the sciatic nerve could be identified bilaterally over the whole length of the thigh, even in areas of close contact to isointense muscles. The landmark of the greater trochanter was falsely palpated by 2.2 cm, and the knee joint by 1 cm. The mean distance between the bifurcation of the sciatic nerve and the knee-joint gap was 6 cm ({+-}1.8 cm). The mean results of the two readers differed by 1-6%. With the described method of MR neurography, the sciatic nerve was depicted reliably and objectively in great anatomical detail over the whole length of the thigh. Important anatomical information can be obtained. The clinical applications of MR neurography for the brachial plexus and lumbosacral plexus/sciatic nerve are discussed. (orig.)

  14. Compilation of 3D soil texture dataset applying indicator kriging method, integrating soil- and agrogeological databases

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    Zsófia Bakacsi

    2012-06-01

    Full Text Available In the frame of the WateRisk Project (2009-2011 hydrological model has been developed for flood risk analysis, demanding the spatial distribution of soil physical properties. 3D, regional scale, spatial datasets were elaborated for pilots, based on the thematic harmonization, horizontal and vertical fitting and interpolation of soil physical parameters originating from two different databases. The profile dataset of the Digital Kreybig Soil Information System is owned by the Research Institute for Soil Science and Agricultural Chemistry; the Shallow Boring Database is managed by the Hungarian Geological Institute. The resultant databases describe the physical properties by texture classes of each of the soil layers (10 cm steps till 1 m depth and geological formations (50 cm steps below 1 m down to the ground water table depth

  15. Improved 3D density modelling of the Central Andes from combining terrestrial datasets with satellite based datasets

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    Schaller, Theresa; Sobiesiak, Monika; Götze, Hans-Jürgen; Ebbing, Jörg

    2015-04-01

    As horizontal gravity gradients are proxies for large stresses, the uniquely high gravity gradients of the South American continental margin seem to be indicative for the frequently occurring large earthquakes at this plate boundary. It has been observed that these earthquakes can break repeatedly the same respective segment but can also combine to form M>9 earthquakes at the end of longer seismic cycles. A large seismic gap left behind by the 1877 M~9 earthquake existed in the northernmost part of Chile. This gap has partially been ruptured in the Mw 7.7 2007 Tocopilla earthquake and the Mw 8.2 2014 Pisagua earthquake. The nature of this seismological segmentation and the distribution of energy release in an earthquake is part of ongoing research. It can be assumed that both features are related to thickness variations of high density bodies located in the continental crust of the coastal area. These batholiths produce a clear maximum in the gravity signal. Those maxima also show a good spatial correlation with seismic asperity structures and seismological segment boundaries. Understanding of the tectonic situation can be improved through 3D forward density modelling of the gravity field. Problems arise in areas with less ground measurements. Especially in the high Andes severe gaps exist due to the inaccessibility of some regions. Also the transition zone between on and offshore date data displays significant problems, particularly since this is the area that is most interesting in terms of seismic hazard. We modelled the continental and oceanic crust and upper mantle using different gravity datasets. The first one includes terrestrial data measured at a station spacing of 5 km or less along all passable roads combined with satellite altimetry data offshore. The second data set is the newly released EIGEN-6C4 which combines the latest satellite data with ground measurements. The spherical harmonics maximum degree of EIGEN-6C4 is 2190 which corresponds to a

  16. 3D reconstruction software comparison for short sequences

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    Strupczewski, Adam; Czupryński, BłaŻej

    2014-11-01

    Large scale multiview reconstruction is recently a very popular area of research. There are many open source tools that can be downloaded and run on a personal computer. However, there are few, if any, comparisons between all the available software in terms of accuracy on small datasets that a single user can create. The typical datasets for testing of the software are archeological sites or cities, comprising thousands of images. This paper presents a comparison of currently available open source multiview reconstruction software for small datasets. It also compares the open source solutions with a simple structure from motion pipeline developed by the authors from scratch with the use of OpenCV and Eigen libraries.

  17. Integrating airborne LiDAR dataset and photographic images towards the construction of 3D building model

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    Idris, R.; Latif, Z. A.; Hamid, J. R. A.; Jaafar, J.; Ahmad, M. Y.

    2014-02-01

    A 3D building model of man-made objects is an important tool for various applications such as urban planning, flood mapping and telecommunication. The reconstruction of 3D building models remains difficult. No universal algorithms exist that can extract all objects in an image successfully. At present, advances in remote sensing such as airborne LiDAR (Light Detection and Ranging) technology have changed the conventional method of topographic mapping and increased the interest of these valued datasets towards 3D building model construction. Airborne LiDAR has proven accordingly that it can provide three dimensional (3D) information of the Earth surface with high accuracy. In this study, with the availability of open source software such as Sketch Up, LiDAR datasets and photographic images could be integrated towards the construction of a 3D building model. In order to realize the work an area comprising residential areas situated at Putrajaya in the Klang Valley region, Malaysia, covering an area of two square kilometer was chosen. The accuracy of the derived 3D building model is assessed quantitatively. It is found that the difference between the vertical height (z) of the 3D building models derived from LiDAR dataset and ground survey is approximately ± 0.09 centimeter (cm). For the horizontal component (RMSExy), the accuracy estimates derived for the 3D building models were ± 0.31m. The result also shows that the qualitative assessment of the 3D building models constructed seems feasible for the depiction in the standard of LOD 3 (Level of details).

  18. Dosimetric impact of different CT datasets for stereotactic treatment planning using 3D conformal radiotherapy or volumetric modulated arc therapy

    OpenAIRE

    Oechsner, Markus; Odersky, Leonhard; Berndt, Johannes; Combs, Stephanie Elisabeth; Wilkens, Jan Jakob; DUMA, MARCIANA NONA

    2015-01-01

    Background The purpose of this study was to assess the impact on dose to the planning target volume (PTV) and organs at risk (OAR) by using four differently generated CT datasets for dose calculation in stereotactic body radiotherapy (SBRT) of lung and liver tumors. Additionally, dose differences between 3D conformal radiotherapy and volumetric modulated arc therapy (VMAT) plans calculated on these CT datasets were determined. Methods Twenty SBRT patients, ten lung cases and ten liver cases, ...

  19. 3D P-wave velocity structure of the deep Galicia rifted margin: A first analysis of the Galicia 3D wide-angle seismic dataset

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    Bayrakci, Gaye; Minshull, Timothy A.; Davy, Richard G.; Karplus, Marianne S.; Kaeschen, Dirk; Papenberg, Cord; Krabbenhoeft, Anne; Sawyer, Dale; Reston, Timothy J.; Shillington, Donna J.; Ranero, César R.

    2014-05-01

    Galicia 3D, a reflection-refraction and long offset seismic experiment was carried out from May through September 2013, at the Galicia rifted margin (in the northeast Atlantic Ocean, west of Spain) as a collaboration between US, UK, German and Spanish groups. The 3D multichannel seismic acquisition conducted by R/V Marcus Langseth covered a 64 km by 20 km (1280 km2) zone where the main geological features are the Peridotite Ridge (PR), composed of serpentinized peridotite and thought be upper mantle exhumed to the seafloor during rifting, and the S reflector which has been interpreted to be a low angle detachment fault overlain by fault bounded, rotated, continental crustal blocks. In the 3D box, two airgun arrays of 3300 cu.in. were fired alternately (in flip-flop configuration) every 37.5 m. All shots are recorded by 44 short period four component ocean bottom seismometers (OBS) and 26 ocean bottom hydrophones (OBH) deployed and recovered by R/V Poseidon, as well as four 6 km hydrophone streamers with 12.5 m channel spacing towed by R/V Marcus Langseth. We present the preliminary results of the first arrival time tomography study which is carried out with a subset of the wide-angle dataset, in order to generate a 3D P-wave velocity volume for the entire depth sampled by the reflection data. After the relocation of OBSs and OBHs, an automatic first-arrival time picking approach is applied to a subset of the dataset, which comprises more than 5.5 million source-receiver pairs. Then, the first-arrival times are checked visually, in 3-dimensions. The a priori model used for the first-arrival time tomography is built up using information from previous seismic surveys carried out at the Galicia margin (e.g. ISE, 1997). The FAST algorithm of Zelt and Barton (1998) is used for the first-arrival time inversion. The 3D P-wave velocity volume can be used in interpreting the reflection dataset, as a starting point for migration, to quantify the thinning of the crustal layers

  20. Prognostic breast cancer signature identified from 3D culture model accurately predicts clinical outcome across independent datasets

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    Martin, Katherine J.; Patrick, Denis R.; Bissell, Mina J.; Fournier, Marcia V.

    2008-10-20

    One of the major tenets in breast cancer research is that early detection is vital for patient survival by increasing treatment options. To that end, we have previously used a novel unsupervised approach to identify a set of genes whose expression predicts prognosis of breast cancer patients. The predictive genes were selected in a well-defined three dimensional (3D) cell culture model of non-malignant human mammary epithelial cell morphogenesis as down-regulated during breast epithelial cell acinar formation and cell cycle arrest. Here we examine the ability of this gene signature (3D-signature) to predict prognosis in three independent breast cancer microarray datasets having 295, 286, and 118 samples, respectively. Our results show that the 3D-signature accurately predicts prognosis in three unrelated patient datasets. At 10 years, the probability of positive outcome was 52, 51, and 47 percent in the group with a poor-prognosis signature and 91, 75, and 71 percent in the group with a good-prognosis signature for the three datasets, respectively (Kaplan-Meier survival analysis, p<0.05). Hazard ratios for poor outcome were 5.5 (95% CI 3.0 to 12.2, p<0.0001), 2.4 (95% CI 1.6 to 3.6, p<0.0001) and 1.9 (95% CI 1.1 to 3.2, p = 0.016) and remained significant for the two larger datasets when corrected for estrogen receptor (ER) status. Hence the 3D-signature accurately predicts breast cancer outcome in both ER-positive and ER-negative tumors, though individual genes differed in their prognostic ability in the two subtypes. Genes that were prognostic in ER+ patients are AURKA, CEP55, RRM2, EPHA2, FGFBP1, and VRK1, while genes prognostic in ER patients include ACTB, FOXM1 and SERPINE2 (Kaplan-Meier p<0.05). Multivariable Cox regression analysis in the largest dataset showed that the 3D-signature was a strong independent factor in predicting breast cancer outcome. The 3D-signature accurately predicts breast cancer outcome across multiple datasets and holds prognostic

  1. HS3D, A Dataset of Homo Sapiens Splice Regions, and its Extraction Procedure from a Major Public Database

    Science.gov (United States)

    Pollastro, Pasquale; Rampone, Salvatore

    The aim of this work is to describe a cleaning procedure of GenBank data, producing material to train and to assess the prediction accuracy of computational approaches for gene characterization. A procedure (GenBank2HS3D) has been defined, producing a dataset (HS3D - Homo Sapiens Splice Sites Dataset) of Homo Sapiens Splice regions extracted from GenBank (Rel.123 at this time). It selects, from the complete GenBank Primate Division, entries of Human Nuclear DNA according with several assessed criteria; then it extracts exons and introns from these entries (actually 4523 + 3802). Donor and acceptor sites are then extracted as windows of 140 nucleotides around each splice site (3799 + 3799). After discarding windows not including canonical GT-AG junctions (65 + 74), including insufficient data (not enough material for a 140 nucleotide window) (686 + 589), including not AGCT bases (29 + 30), and redundant (218 + 226), the remaining windows (2796 + 2880) are reported in the dataset. Finally, windows of false splice sites are selected by searching canonical GT-AG pairs in not splicing positions (271 937 + 332 296). The false sites in a range +/- 60 from a true splice site are marked as proximal. HS3D, release 1.2 at this time, is available at the Web server of the University of Sannio: http://www.sci.unisannio.it/docenti/rampone/.

  2. Automatic 3d Building Reconstruction from a Dense Image Matching Dataset

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    McClune, Andrew P.; Mills, Jon P.; Miller, Pauline E.; Holland, David A.

    2016-06-01

    Over the last 20 years the demand for three dimensional (3D) building models has resulted in a vast amount of research being conducted in attempts to automate the extraction and reconstruction of models from airborne sensors. Recent results have shown that current methods tend to favour planar fitting procedures from lidar data, which are able to successfully reconstruct simple roof structures automatically but fail to reconstruct more complex structures or roofs with small artefacts. Current methods have also not fully explored the potential of recent developments in digital photogrammetry. Large format digital aerial cameras can now capture imagery with increased overlap and a higher spatial resolution, increasing the number of pixel correspondences between images. Every pixel in each stereo pair can also now be matched using per-pixel algorithms, which has given rise to the approach known as dense image matching. This paper presents an approach to 3D building reconstruction to try and overcome some of the limitations of planar fitting procedures. Roof vertices, extracted from true-orthophotos using edge detection, are refined and converted to roof corner points. By determining the connection between extracted corner points, a roof plane can be defined as a closed-cycle of points. Presented results demonstrate the potential of this method for the reconstruction of complex 3D building models at CityGML LoD2 specification.

  3. 3D Inversion of a Self-Potential Dataset for Contaminant Detection and Mapping

    Science.gov (United States)

    Minsley, B. J.; Sogade, J.; Briggs, V.; Lambert, M.; Reppert, P.; Coles, D.; Morgan, F.; Rossabi, J.; Riha, B.; Shi, W.

    2003-12-01

    Due to the complicated nature of subsurface contaminant migration, it is difficult to determine the spatial extent and severity of contamination, which can provide essential information for efficient remediation efforts. Self-potential (SP) geophysics is employed to provide a minimally invasive, fast, and inexpensive method for remote in-situ detection and three-dimensional mapping of subsurface DNAPL (Dense Non-Aqueous Phase Liquid) in conjunction with inverse methods. The self-potential method is commonly used to detect a variety of phenomena that are typically related to thermoelectric, electrochemical, or electrokinetic coupling processes. Surface self-potential surveys have been documented to show anomalies over areas known to be contaminated, but interpretation of these datasets is often mostly qualitative, and can be plagued with problems of non-uniqueness. In this study, oxidation-reduction (redox) reactions, one of the mechanisms associated with the attenuation of chemicals released into the environment, provide an electrochemical source for the SP signal. Electrochemical potentials associated with subsurface zones of redox activity are analogous to localized 'batteries' buried within native earth materials, and produce an electric field that is remotely detected using electrodes placed at the surface and in nearby boreholes. Three-dimensional inversion of the self-potential data incorporating resistivity information is the necessary step in characterizing the source parameters, which are directly related to the redox activity, and therefore to the contaminant itself. Surface and borehole SP data are collected in order to help constrain the solution in depth, and resistivity information is taken from an induced polarization survey performed over the same area during this field excursion. Inversion results are correlated with contaminant concentration data sampled from a series of ground-truth boreholes within the region of interest.

  4. Preliminary comparison of 3D synthetic aperture imaging with Explososcan

    OpenAIRE

    Rasmussen, Morten Fischer; Hansen, Jens Munk; Ferin, Guillaume; Dufait, Remi; Jensen, Jørgen Arendt

    2012-01-01

    Explososcan is the 'gold standard' for real-time 3D medical ultrasound imaging. In this paper, 3D synthetic aperture imaging is compared to Explososcan by simulation of 3D point spread functions. The simulations mimic a 32x32 element prototype transducer. The transducer mimicked is a dense matrix phased array with a pitch of 300 μm, made by Vermon. For both imaging techniques, 289 emissions are used to image a volume spanning 60 in both the azimuth and elevation direction and 150mm in depth. ...

  5. Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets

    Directory of Open Access Journals (Sweden)

    Pielot Rainer

    2010-01-01

    Full Text Available Abstract Background Solving bioinformatics tasks often requires extensive computational power. Recent trends in processor architecture combine multiple cores into a single chip to improve overall performance. The Cell Broadband Engine (CBE, a heterogeneous multi-core processor, provides power-efficient and cost-effective high-performance computing. One application area is image analysis and visualisation, in particular registration of 2D cross-sections into 3D image datasets. Such techniques can be used to put different image modalities into spatial correspondence, for example, 2D images of histological cuts into morphological 3D frameworks. Results We evaluate the CBE-driven PlayStation 3 as a high performance, cost-effective computing platform by adapting a multimodal alignment procedure to several characteristic hardware properties. The optimisations are based on partitioning, vectorisation, branch reducing and loop unrolling techniques with special attention to 32-bit multiplies and limited local storage on the computing units. We show how a typical image analysis and visualisation problem, the multimodal registration of 2D cross-sections and 3D datasets, benefits from the multi-core based implementation of the alignment algorithm. We discuss several CBE-based optimisation methods and compare our results to standard solutions. More information and the source code are available from http://cbe.ipk-gatersleben.de. Conclusions The results demonstrate that the CBE processor in a PlayStation 3 accelerates computational intensive multimodal registration, which is of great importance in biological/medical image processing. The PlayStation 3 as a low cost CBE-based platform offers an efficient option to conventional hardware to solve computational problems in image processing and bioinformatics.

  6. BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.

    Science.gov (United States)

    Wan, Yinan; Long, Fuhui; Qu, Lei; Xiao, Hang; Hawrylycz, Michael; Myers, Eugene W; Peng, Hanchuan

    2015-10-01

    Characterizing the identity and types of neurons in the brain, as well as their associated function, requires a means of quantifying and comparing 3D neuron morphology. Presently, neuron comparison methods are based on statistics from neuronal morphology such as size and number of branches, which are not fully suitable for detecting local similarities and differences in the detailed structure. We developed BlastNeuron to compare neurons in terms of their global appearance, detailed arborization patterns, and topological similarity. BlastNeuron first compares and clusters 3D neuron reconstructions based on global morphology features and moment invariants, independent of their orientations, sizes, level of reconstruction and other variations. Subsequently, BlastNeuron performs local alignment between any pair of retrieved neurons via a tree-topology driven dynamic programming method. A 3D correspondence map can thus be generated at the resolution of single reconstruction nodes. We applied BlastNeuron to three datasets: (1) 10,000+ neuron reconstructions from a public morphology database, (2) 681 newly and manually reconstructed neurons, and (3) neurons reconstructions produced using several independent reconstruction methods. Our approach was able to accurately and efficiently retrieve morphologically and functionally similar neuron structures from large morphology database, identify the local common structures, and find clusters of neurons that share similarities in both morphology and molecular profiles.

  7. 3D granulometry: grain-scale shape and size distribution from point cloud dataset of river environments

    Science.gov (United States)

    Steer, Philippe; Lague, Dimitri; Gourdon, Aurélie; Croissant, Thomas; Crave, Alain

    2016-04-01

    The grain-scale morphology of river sediments and their size distribution are important factors controlling the efficiency of fluvial erosion and transport. In turn, constraining the spatial evolution of these two metrics offer deep insights on the dynamics of river erosion and sediment transport from hillslopes to the sea. However, the size distribution of river sediments is generally assessed using statistically-biased field measurements and determining the grain-scale shape of river sediments remains a real challenge in geomorphology. Here we determine, with new methodological approaches based on the segmentation and geomorphological fitting of 3D point cloud dataset, the size distribution and grain-scale shape of sediments located in river environments. Point cloud segmentation is performed using either machine-learning algorithms or geometrical criterion, such as local plan fitting or curvature analysis. Once the grains are individualized into several sub-clouds, each grain-scale morphology is determined using a 3D geometrical fitting algorithm applied on the sub-cloud. If different geometrical models can be conceived and tested, only ellipsoidal models were used in this study. A phase of results checking is then performed to remove grains showing a best-fitting model with a low level of confidence. The main benefits of this automatic method are that it provides 1) an un-biased estimate of grain-size distribution on a large range of scales, from centimeter to tens of meters; 2) access to a very large number of data, only limited by the number of grains in the point-cloud dataset; 3) access to the 3D morphology of grains, in turn allowing to develop new metrics characterizing the size and shape of grains. The main limit of this method is that it is only able to detect grains with a characteristic size greater than the resolution of the point cloud. This new 3D granulometric method is then applied to river terraces both in the Poerua catchment in New-Zealand and

  8. Preliminary comparison of 3D synthetic aperture imaging with Explososcan

    Science.gov (United States)

    Rasmussen, Morten Fischer; Hansen, Jens Munk; Férin, Guillaume; Dufait, Rémi; Jensen, Jørgen Arendt

    2012-03-01

    Explososcan is the 'gold standard' for real-time 3D medical ultrasound imaging. In this paper, 3D synthetic aperture imaging is compared to Explososcan by simulation of 3D point spread functions. The simulations mimic a 32×32 element prototype transducer. The transducer mimicked is a dense matrix phased array with a pitch of 300 μm, made by Vermon. For both imaging techniques, 289 emissions are used to image a volume spanning 60° in both the azimuth and elevation direction and 150mm in depth. This results for both techniques in a frame rate of 18 Hz. The implemented synthetic aperture technique reduces the number of transmit channels from 1024 to 256, compared to Explososcan. In terms of FWHM performance, was Explososcan and synthetic aperture found to perform similar. At 90mm depth is Explososcan's FWHM performance 7% better than that of synthetic aperture. Synthetic aperture improved the cystic resolution, which expresses the ability to detect anechoic cysts in a uniform scattering media, at all depths except at Explososcan's focus point. Synthetic aperture reduced the cyst radius, R20dB, at 90mm depth by 48%. Synthetic aperture imaging was shown to reduce the number of transmit channels by four and still, generally, improve the imaging quality.

  9. Constraints on 3D fault and fracture distribution in layered volcanic- volcaniclastic sequences from terrestrial LIDAR datasets: Faroe Islands

    Science.gov (United States)

    Raithatha, Bansri; McCaffrey, Kenneth; Walker, Richard; Brown, Richard; Pickering, Giles

    2013-04-01

    Hydrocarbon reservoirs commonly contain an array of fine-scale structures that control fluid flow in the subsurface, such as polyphase fracture networks and small-scale fault zones. These structures are unresolvable using seismic imaging and therefore outcrop-based studies have been used as analogues to characterize fault and fracture networks and assess their impact on fluid flow in the subsurface. To maximize recovery and enhance production, it is essential to understand the geometry, physical properties, and distribution of these structures in 3D. Here we present field data and terrestrial LIDAR-derived 3D, photo-realistic virtual outcrops of fault zones at a range of displacement scales (0.001- 4.5 m) within a volcaniclastic sand- and basaltic lava unit sequence in the Faroe Islands. Detailed field observations were used to constrain the virtual outcrop dataset, and a workflow has been developed to build a discrete fracture network (DFN) models in GOCAD® from these datasets. Model construction involves three main stages: (1) Georeferencing and processing of LIDAR datasets; (2) Structural interpretation to discriminate between faults, fractures, veins, and joint planes using CAD software and RiSCAN Pro; and (3) Building a 3D DFN in GOCAD®. To test the validity of this workflow, we focus here on a 4.5 m displacement strike-slip fault zone that displays a complex polymodal fracture network in the inter-layered basalt-volcaniclastic sequence, which is well-constrained by field study. The DFN models support our initial field-based hypothesis that fault zone geometry varies with increasing displacement through volcaniclastic units. Fracture concentration appears to be greatest in the upper lava unit, decreases into the volcaniclastic sediments, and decreases further into the lower lava unit. This distribution of fractures appears to be related to the width of the fault zone and the amount of fault damage on the outcrop. For instance, the fault zone is thicker in

  10. Volcanic Ash Cloud Properties: Comparison Between MODIS Satellite Retrievals and FALL3D Transport Model

    OpenAIRE

    Corradini, S.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione CNT, Roma, Italia; Merucci, L.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione CNT, Roma, Italia; Folch, A.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione OV, Napoli, Italia

    2011-01-01

    The moderate Resolution Imaging Spectroradiometer (MODIS) is a multispectral satellite instrument operating from the visible to thermal infrared spectral range. FALL3D is a 3-D time-dependent Eulerian model for the transport and deposition of volcanic particles. In this letter, quantitative comparison between the volcanic cloud ash mass and optical depth retrieved by MODIS and modeled by FALL3D has been performed. Three MODIS images collected on October 28, 29, and 30 on Mt. Etna volcano duri...

  11. 3D modelling of the Austroalpine-Penninic collisional wedge of the NW Alps: dataset management and preliminary results

    Science.gov (United States)

    Monopoli, Bruno; Bistacchi, Andrea; Bertolo, Davide; Dal Piaz, Giovanni; Gouffon, Yves; Massironi, Matteo; Sartori, Mario; Vittorio Dal Piaz, Giorgio

    2016-04-01

    We know since the beginning of the 20th century, thanks to mapping and structural studies by the Italian Regio Servizio Geologico (Franchi et al., 1908) and Argand's work (1909; 1911; 1916), that the Austroalpine-Penninic collisional wedge of the NW Alps is spectacularly exposed across the Aosta Valley and Valais ranges (Italy and Switzerland). In the 150th anniversary of the first ascent to Ruskin's "most noble cliff in Europe" - the Cervino/Matterhorn (Whymper, July 14th 1865), first described in a geological profile by Giordano (1869) and in a detailed map by Gerlach (1869; 1871), we have seen the conclusion of very detailed mapping projects carried out in the last years over the two regions, with collaborative efforts across the Italy-Switzerland border, constellated by 4000 m-high peaks. These projects have pictured with an unprecedented detail (up to 1:10.000 scale) the geology of this complex region, resulting from pre-Alpine events, Alpine subduction- and collision-related ductile deformations, and finally late-Alpine brittle deformations from the Oligocene to the Present. Based on this dataset, we use up-to-date technology and software to undertake a 3D modelling study aimed at: i) reconstructing the 3D geometry of the principal tectonic units, ii) detecting and unravelling problems and incongruences in the 2D geometrical models, iii) modelling the kinematics of the Oligocene and Miocene brittle fault network using 2D and 3D balancing and palinspastic restoration techniques. In this contribution we mainly discuss the prerequisites of the project. Common geomodelling paradigms (mainly developed for the hydrocarbon industry) cannot be applied in this project due to (i) the little scale, (ii) the source of the data - fieldwork, and (iii) the polyphase ductile and brittle deformations in the metamorphic nappe stack. Our goals at the moment are to model the post-metamorphic fault network and the boundaries of the principal tectonic units, which will be

  12. Comparison of recent SnIa datasets

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez, J.C. Bueno; Perivolaropoulos, L. [Department of Physics, University of Ioannina, Ioannina (Greece); Nesseris, S., E-mail: jbueno@cc.uoi.gr, E-mail: nesseris@nbi.ku.dk, E-mail: leandros@uoi.gr [The Niels Bohr International Academy, The Niels Bohr Institute, Blegdamsvej 17, DK-2100, Copenhagen Ø (Denmark)

    2009-11-01

    We rank the six latest Type Ia supernova (SnIa) datasets (Constitution (C), Union (U), ESSENCE (Davis) (E), Gold06 (G), SNLS 1yr (S) and SDSS-II (D)) in the context of the Chevalier-Polarski-Linder (CPL) parametrization w(a) = w{sub 0}+w{sub 1}(1−a), according to their Figure of Merit (FoM), their consistency with the cosmological constant (ΛCDM), their consistency with standard rulers (Cosmic Microwave Background (CMB) and Baryon Acoustic Oscillations (BAO)) and their mutual consistency. We find a significant improvement of the FoM (defined as the inverse area of the 95.4% parameter contour) with the number of SnIa of these datasets ((C) highest FoM, (U), (G), (D), (E), (S) lowest FoM). Standard rulers (CMB+BAO) have a better FoM by about a factor of 3, compared to the highest FoM SnIa dataset (C). We also find that the ranking sequence based on consistency with ΛCDM is identical with the corresponding ranking based on consistency with standard rulers ((S) most consistent, (D), (C), (E), (U), (G) least consistent). The ranking sequence of the datasets however changes when we consider the consistency with an expansion history corresponding to evolving dark energy (w{sub 0},w{sub 1}) = (−1.4,2) crossing the phantom divide line w = −1 (it is practically reversed to (G), (U), (E), (S), (D), (C)). The SALT2 and MLCS2k2 fitters are also compared and some peculiar features of the SDSS-II dataset when standardized with the MLCS2k2 fitter are pointed out. Finally, we construct a statistic to estimate the internal consistency of a collection of SnIa datasets. We find that even though there is good consistency among most samples taken from the above datasets, this consistency decreases significantly when the Gold06 (G) dataset is included in the sample.

  13. Multi-sourced, 3D geometric characterization of volcanogenic karst features: Integrating lidar, sonar, and geophysical datasets (Invited)

    Science.gov (United States)

    Sharp, J. M.; Gary, M. O.; Reyes, R.; Halihan, T.; Fairfield, N.; Stone, W. C.

    2009-12-01

    Karstic aquifers can form very complex hydrogeological systems and 3-D mapping has been difficult, but Lidar, phased array sonar, and improved earth resistivity techniques show promise in this and in linking metadata to models. Zacatón, perhaps the Earth’s deepest cenote, has a sub-aquatic void space exceeding 7.5 x 106 cubic m3. It is the focus of this study which has created detailed 3D maps of the system. These maps include data from above and beneath the the water table and within the rock matrix to document the extent of the immense karst features and to interpret the geologic processes that formed them. Phase 1 used high resolution (20 mm) Lidar scanning of surficial features of four large cenotes. Scan locations, selected to achieve full feature coverage once registered, were established atop surface benchmarks with UTM coordinates established using GPS and Total Stations. The combined datasets form a geo-registered mesh of surface features down to water level in the cenotes. Phase 2 conducted subsurface imaging using Earth Resistivity Imaging (ERI) geophysics. ERI identified void spaces isolated from open flow conduits. A unique travertine morphology exists in which some cenotes are dry or contain shallow lakes with flat travertine floors; some water-filled cenotes have flat floors without the cone of collapse material; and some have collapse cones. We hypothesize that the floors may have large water-filled voids beneath them. Three separate flat travertine caps were imaged: 1) La Pilita, which is partially open, exposing cap structure over a deep water-filled shaft; 2) Poza Seca, which is dry and vegetated; and 3) Tule, which contains a shallow (cenote Verde. La Pilita ERI, verified by SCUBA, documented the existence of large water-filled void zones ERI at Poza Seca showed a thin cap overlying a conductive zone extending to at least 25 m depth beneath the cap with no lower boundary of this zone evident. Verde ERI indicate a deep water-filled cavity

  14. Face Recognition using 3D Facial Shape and Color Map Information: Comparison and Combination

    CERN Document Server

    Godil, Afzal; Grother, Patrick

    2011-01-01

    In this paper, we investigate the use of 3D surface geometry for face recognition and compare it to one based on color map information. The 3D surface and color map data are from the CAESAR anthropometric database. We find that the recognition performance is not very different between 3D surface and color map information using a principal component analysis algorithm. We also discuss the different techniques for the combination of the 3D surface and color map information for multi-modal recognition by using different fusion approaches and show that there is significant improvement in results. The effectiveness of various techniques is compared and evaluated on a dataset with 200 subjects in two different positions.

  15. Comparison of Recent SnIa datasets

    OpenAIRE

    Sanchez, J. C. Bueno; Nesseris, S.; Perivolaropoulos, L.

    2009-01-01

    We rank the six latest Type Ia supernova (SnIa) datasets (Constitution (C), Union (U), ESSENCE (Davis) (E), Gold06 (G), SNLS 1yr (S) and SDSS-II (D)) in the context of the Chevalier-Polarski-Linder (CPL) parametrization $w(a)=w_0+w_1 (1-a)$, according to their Figure of Merit (FoM), their consistency with the cosmological constant ($\\Lambda$CDM), their consistency with standard rulers (Cosmic Microwave Background (CMB) and Baryon Acoustic Oscillations (BAO)) and their mutual consistency. We f...

  16. Comparison of 3D Synthetic Aperture Imaging and Explososcan using Phantom Measurements

    DEFF Research Database (Denmark)

    Rasmussen, Morten Fischer; Férin, Guillaume; Dufait, Rémi;

    2012-01-01

    In this paper, initial 3D ultrasound measurements from a 1024 channel system are presented. Measurements of 3D Synthetic aperture imaging (SAI) and Explososcan are presented and compared. Explososcan is the ’gold standard’ for real-time 3D medical ultrasound imaging. SAI is compared to Explososcan...... by using tissue and wire phantom measurements. The measurements are carried out using a 1024 element 2D transducer and the 1024 channel experimental ultrasound scanner SARUS. To make a fair comparison, the two imaging techniques use the same number of active channels, the same number of emissions per frame...

  17. Generation of high quality multi-view confocal 3D datasets of zebrafish larval brains suitable for analysis using Virtual Brain Explorer (ViBE-Z) software

    OpenAIRE

    sprotocols

    2015-01-01

    Authors: Meta Rath, Roland Nitschke, Alida Filippi, Olaf Ronneberger & Wolfgang Driever ### Abstract In this protocol we describe a method to produce multi-view confocal 3D datasets suitable to be processed by the Virtual Brain Explorer (ViBE-Z) software. The method is optimized for Zebrafish (Danio rerio) embryos and larvae from one to five days post fertilization, but may be used also for other small biological objects. Zebrafish larvae are stained using either fluorescent in si...

  18. Comparison of physical quality assurance between Scanora 3D and 3D Accuitomo 80 dental CT scanners

    Directory of Open Access Journals (Sweden)

    Ahmed S. Ali

    2015-06-01

    Full Text Available Background: The use of cone beam computed tomography (CBCT in dentistry has proven to be useful in the diagnosis and treatment planning of several oral and maxillofacial diseases. The quality of the resulting image is dictated by many factors related to the patient, unit, and operator. Materials and methods: In this work, two dental CBCT units, namely Scanora 3D and 3D Accuitomo 80, were assessed and compared in terms of quantitative effective dose delivered to specific locations in a dosimetry phantom. Resolution and contrast were evaluated in only 3D Accuitomo 80 using special quality assurance phantoms. Results: Scanora 3D, with less radiation time, showed less dosing values compared to 3D Accuitomo 80 (mean 0.33 mSv, SD±0.16 vs. 0.18 mSv, SD±0.1. Using paired t-test, no significant difference was found in Accuitomo two scan sessions (p>0.05, while it was highly significant in Scanora (p>0.05. The modulation transfer function value (at 2 lp/mm, in both measurements, was found to be 4.4%. The contrast assessment of 3D Accuitomo 80 in the two measurements showed few differences, for example, the grayscale values were the same (SD=0 while the noise level was slightly different (SD=0 and 0.67, respectively. Conclusions: The radiation dose values in these two CBCT units are significantly less than those encountered in systemic CT scans. However, the dose seems to be affected more by changing the field of view rather than the voltage or amperage. The low doses were at the expense of the image quality produced, which was still acceptable. Although the spatial resolution and contrast were inferior to the medical images produced in systemic CT units, the present results recommend adopting CBCTs in maxillofacial imaging because of low radiation dose and adequate image quality.

  19. Modeling 3D Fracture Network in Carbonate NFR: Contribution from an Analogue Dataset, the Cante Perdrix Quarry, Calvisson, SE France

    NARCIS (Netherlands)

    Gauthier, B.D.M.; Bisdom, K.; Bertotti, G.

    2012-01-01

    The full 3D characterization of fracture networks is a key issue in naturally fractured reservoir modeling. Fracture geometry (e.g., orientation, size, spacing), fracture scale (e.g., bed-confined fractures, fracture corridors), lateral and vertical variations, need to be defined from limited, gener

  20. A dimensional comparison between embedded 3D-printed and silicon microchannels

    International Nuclear Information System (INIS)

    The subject of this paper is the dimensional characterization of embedded microchannel arrays created using contemporary 3D-printing fabrication techniques. Conventional microchannel arrays, fabricated using deep reactive ion etching techniques (DRIE) and wet-etching (KOH), are used as a benchmark for comparison. Rectangular and trapezoidal cross-sectional shapes were investigated. The channel arrays were 3D-printed in vertical and horizontal directions, to examine the influence of print orientation on channel characteristics. The 3D-printed channels were benchmarked against Silicon channels in terms of the following dimensional characteristics: cross-sectional area (CSA), perimeter, and surface profiles. The 3D-printed microchannel arrays demonstrated variances in CSA of 6.6-20% with the vertical printing approach yielding greater dimensional conformity than the horizontal approach. The measured CSA and perimeter of the vertical channels were smaller than the nominal dimensions, while the horizontal channels were larger in both CSA and perimeter due to additional side-wall roughness present throughout the channel length. This side-wall roughness caused significant shape distortion. Surface profile measurements revealed that the base wall roughness was approximately the resolution of current 3D-printers. A spatial periodicity was found along the channel length which appeared at different frequencies for each channel array. This paper concludes that vertical 3D-printing is superior to the horizontal printing approach, in terms of both dimensional fidelity and shape conformity and can be applied in microfluidic device applications.

  1. Comparison Between Two Generic 3d Building Reconstruction Approaches - Point Cloud Based VS. Image Processing Based

    Science.gov (United States)

    Dahlke, D.; Linkiewicz, M.

    2016-06-01

    This paper compares two generic approaches for the reconstruction of buildings. Synthesized and real oblique and vertical aerial imagery is transformed on the one hand into a dense photogrammetric 3D point cloud and on the other hand into photogrammetric 2.5D surface models depicting a scene from different cardinal directions. One approach evaluates the 3D point cloud statistically in order to extract the hull of structures, while the other approach makes use of salient line segments in 2.5D surface models, so that the hull of 3D structures can be recovered. With orders of magnitudes more analyzed 3D points, the point cloud based approach is an order of magnitude more accurate for the synthetic dataset compared to the lower dimensioned, but therefor orders of magnitude faster, image processing based approach. For real world data the difference in accuracy between both approaches is not significant anymore. In both cases the reconstructed polyhedra supply information about their inherent semantic and can be used for subsequent and more differentiated semantic annotations through exploitation of texture information.

  2. Comparison of S3D Display Technology on Image Quality and Viewing Experiences: Active-Shutter 3d TV vs. Passive-Polarized 3DTV

    Directory of Open Access Journals (Sweden)

    Yu-Chi Tai, PhD

    2014-05-01

    Full Text Available Background: Stereoscopic 3D TV systems convey depth perception to the viewer by delivering to each eye separately filtered images that represent two slightly different perspectives. Currently two primary technologies are used in S3D televisions: Active shutter systems, which use alternate frame sequencing to deliver a full-frame image to one eye at a time at a fast refresh rate, and Passive polarized systems, which superimpose the two half-frame left-eye and right-eye images at the same time through different polarizing filters. Methods: We compare visual performance in discerning details and perceiving depth, as well as the comfort and perceived display quality in viewing an S3D movie. Results: Our results show that, in presenting details of small targets and in showing low-contrast stimuli, the Active system was significantly better than the Passive in 2D mode, but there was no significant difference between them in 3D mode. Subjects performed better on Passive than Active in 3D mode on a task requiring small vergence changes and quick re-acquisition of stereopsis – a skill related to vergence efficiency while viewing S3D displays. When viewing movies in 3D mode, there was no difference in symptoms of discomfort between Active and Passive systems. When the two systems were put side by side with selected 3D-movie scenes, all of the subjective measures of perceived display quality in 3D mode favored the Passive system, and 10 of 14 comparisons were statistically significant. The Passive system was rated significantly better for sense of immersion, motion smoothness, clarity, color, and 5 categories related to the glasses. Conclusion: Overall, participants felt that it was easier to look at the Passive system for a longer period than the Active system, and the Passive display was selected as the preferred display by 75% (p = 0.0000211 of the subjects.

  3. Comparison of 3D TOF-MRA and 3D CE-MRA at 3 T for imaging of intracranial aneurysms

    Energy Technology Data Exchange (ETDEWEB)

    Cirillo, Mario, E-mail: mario.cirillo@unina2.it [Department of Medical, Surgical, Neurological, Metabolic and Aging Sciences – 2nd University of Naples (Italy); Scomazzoni, Francesco [Department of Neuroradiology, Scientific Institute San Raffaele, Milan (Italy); Cirillo, Luigi [IRCCS – Institute of Neurological Sciences, Bologna (Italy); Cadioli, Marcello; Simionato, Franco; Iadanza, Antonella [Department of Neuroradiology, Scientific Institute San Raffaele, Milan (Italy); Kirchin, Miles [Worldwide Medical and Regulatory Affairs, Bracco Imaging SpA, Milan (Italy); Righi, Claudio; Anzalone, Nicoletta [Department of Neuroradiology, Scientific Institute San Raffaele, Milan (Italy)

    2013-12-01

    Purpose: To compare 3 T elliptical-centric CE MRA with 3 T TOF MRA for the detection and characterization of unruptured intracranial aneurysms (UIAs), by using digital subtracted angiography (DSA) as reference. Materials and methods: Twenty-nine patients (12 male, 17 female; mean age: 62 years) with 41 aneurysms (34 saccular, 7 fusiform; mean diameter: 8.85 mm [range 2.0–26.4 mm]) were evaluated with MRA at 3 T each underwent 3D TOF-MRA examination without contrast and then a 3D contrast-enhanced (CE-MRA) examination with 0.1 mmol/kg bodyweight gadobenate dimeglumine and k-space elliptic mapping (Contrast ENhanced Timing Robust Angiography [CENTRA]). Both TOF and CE-MRA images were used to evaluate morphologic features that impact the risk of rupture and the selection of a treatment. Almost half (20/41) of UIAs were located in the internal carotid artery, 7 in the anterior communicating artery, 9 in the middle cerebral artery and 4 in the vertebro-basilar arterial system. All patients also underwent DSA before or after the MR examination. Results: The CE-MRA results were in all cases consistent with the DSA dataset. No differences were noted between 3D TOF-MRA and CE-MRA concerning the detection and location of the 41 aneurysms or visualization of the parental artery. Differences were apparent concerning the visualization of morphologic features, especially for large aneurysms (>13 mm). An irregular sac shape was demonstrated for 21 aneurysms on CE-MRA but only 13/21 aneurysms on 3D TOF-MRA. Likewise, CE-MRA permitted visualization of an aneurismal neck and calculation of the sac/neck ratio for all 34 aneurysms with a neck demonstrated at DSA. Conversely, a neck was visible for only 24/34 aneurysms at 3D TOF-MRA. 3D CE-MRA detected 15 aneurysms with branches originating from the sac and/or neck, whereas branches were recognized in only 12/15 aneurysms at 3D TOF-MRA. Conclusion: For evaluation of intracranial aneurysms at 3 T, 3D CE-MRA is superior to 3D TOF

  4. Validation and Comparison of 2D and 3D Codes for Nearshore Motion of Long Waves Using Benchmark Problems

    Science.gov (United States)

    Velioǧlu, Deniz; Cevdet Yalçıner, Ahmet; Zaytsev, Andrey

    2016-04-01

    Tsunamis are huge waves with long wave periods and wave lengths that can cause great devastation and loss of life when they strike a coast. The interest in experimental and numerical modeling of tsunami propagation and inundation increased considerably after the 2011 Great East Japan earthquake. In this study, two numerical codes, FLOW 3D and NAMI DANCE, that analyze tsunami propagation and inundation patterns are considered. Flow 3D simulates linear and nonlinear propagating surface waves as well as long waves by solving three-dimensional Navier-Stokes (3D-NS) equations. NAMI DANCE uses finite difference computational method to solve 2D depth-averaged linear and nonlinear forms of shallow water equations (NSWE) in long wave problems, specifically tsunamis. In order to validate these two codes and analyze the differences between 3D-NS and 2D depth-averaged NSWE equations, two benchmark problems are applied. One benchmark problem investigates the runup of long waves over a complex 3D beach. The experimental setup is a 1:400 scale model of Monai Valley located on the west coast of Okushiri Island, Japan. Other benchmark problem is discussed in 2015 National Tsunami Hazard Mitigation Program (NTHMP) Annual meeting in Portland, USA. It is a field dataset, recording the Japan 2011 tsunami in Hilo Harbor, Hawaii. The computed water surface elevation and velocity data are compared with the measured data. The comparisons showed that both codes are in fairly good agreement with each other and benchmark data. The differences between 3D-NS and 2D depth-averaged NSWE equations are highlighted. All results are presented with discussions and comparisons. Acknowledgements: Partial support by Japan-Turkey Joint Research Project by JICA on earthquakes and tsunamis in Marmara Region (JICA SATREPS - MarDiM Project), 603839 ASTARTE Project of EU, UDAP-C-12-14 project of AFAD Turkey, 108Y227, 113M556 and 213M534 projects of TUBITAK Turkey, RAPSODI (CONCERT_Dis-021) of CONCERT

  5. 3D-QSAR modelling dataset of bioflavonoids for predicting the potential modulatory effect on P-glycoprotein activity.

    Science.gov (United States)

    Wongrattanakamon, Pathomwat; Lee, Vannajan Sanghiran; Nimmanpipug, Piyarat; Jiranusornkul, Supat

    2016-12-01

    The data is obtained from exploring the modulatory activities of bioflavonoids on P-glycoprotein function by ligand-based approaches. Multivariate Linear-QSAR models for predicting the induced/inhibitory activities of the flavonoids were created. Molecular descriptors were initially used as independent variables and a dependent variable was expressed as pFAR. The variables were then used in MLR analysis by stepwise regression calculation to build the linear QSAR data. The entire dataset consisted of 23 bioflavonoids was used as a training set. Regarding the obtained MLR QSAR model, R of 0.963, R (2)=0.927, [Formula: see text], SEE=0.197, F=33.849 and q (2)=0.927 were achieved. The true predictabilities of QSAR model were justified by evaluation with the external dataset (Table 4). The pFARs of representative flavonoids were predicted by MLR QSAR modelling. The data showed that internal and external validations may generate the same conclusion. PMID:27626051

  6. The next chapter in experimental petrology: Metamorphic dehydration of polycrystalline gypsum captured in 3D microtomographic time series datasets

    Science.gov (United States)

    Bedford, John; Fusseis, Florian; Leclere, Henry; Wheeler, John; Faulkner, Dan

    2016-04-01

    Nucleation and growth of new minerals in response to disequilibrium is the most fundamental metamorphic process. However, our current kinetic models of metamorphic reactions are largely based on inference from fossil mineral assemblages, rather than from direct observation. The experimental investigation of metamorphism has also been limited, typically to concealed vessels that restrict the possibility of direct microstructural monitoring. Here we present one of the first time series datasets that captures a metamorphic reaction, dehydration of polycrystalline gypsum to form hemihydrate, in a series of three dimensional x-ray microtomographic datasets. We achieved this by installing an x-ray transparent hydrothermal cell (Fusseis et al., 2014, J. Synchrotron Rad. 21, 251-253) in the microtomography beamline 2BM at the Advanced Photon Source (USA). In the cell, we heated a millimetre-sized sample of Volterra Alabaster to 388 K while applying an effective pressure of 5 MPa. Using hard x-rays that penetrate the pressure vessel, we imaged the specimen 40 times while it reacted for approximately 10 hours. Each microtomographic dataset was acquired in 300 seconds without interrupting the reaction. Our absorption microtomographic data have a voxel size of 1.3 μm, which suffices to analyse the reaction progress in 4D. Gypsum can clearly be distinguished from hemihydrate and pores, which form due to the large negative solid volume change. On the resolved scale, the first hemihydrate needles appear after about 2 hours. Our data allow tracking of individual needles throughout the entire experiment. We quantified their growth rates by measuring their circumference. While individual grains grow at different rates, they all start slowly during the initial nucleation stage, then accelerate and grow steadily between about 200 and 400 minutes before reaction rate decelerates again. Hemihydrate needles are surrounded by porous haloes, which grow with the needles, link up and

  7. 3D RECONSTRUCTION OF AN UNDERWATER ARCHAELOGICAL SITE: COMPARISON BETWEEN LOW COST CAMERAS

    Directory of Open Access Journals (Sweden)

    A. Capra

    2015-04-01

    Full Text Available The 3D reconstruction with a metric content of a submerged area, where objects and structures of archaeological interest are found, could play an important role in the research and study activities and even in the digitization of the cultural heritage. The reconstruction of 3D object, of interest for archaeologists, constitutes a starting point in the classification and description of object in digital format and for successive fruition by user after delivering through several media. The starting point is a metric evaluation of the site obtained with photogrammetric surveying and appropriate 3D restitution. The authors have been applying the underwater photogrammetric technique since several years using underwater digital cameras and, in this paper, digital low cost cameras (off-the-shelf. Results of tests made on submerged objects with three cameras are presented: © Canon Power Shot G12, © Intova Sport HD e © GoPro HERO 2. The experimentation had the goal to evaluate the precision in self-calibration procedures, essential for multimedia underwater photogrammetry, and to analyze the quality of 3D restitution. Precisions obtained in the calibration and orientation procedures was assessed by using three cameras, and an homogeneous set control points. Data were processed with © Agisoft Photoscan. Successively, 3D models were created and the comparison of the models derived from the use of different cameras was performed. Different potentialities of the used cameras are reported in the discussion section. The 3D restitution of objects and structures was integrated with sea bottom floor morphology in order to achieve a comprehensive description of the site. A possible methodology of survey and representation of submerged objects is therefore illustrated, considering an automatic and a semi-automatic approach.

  8. Development and comparison of projection and image space 3D nodule insertion techniques

    Science.gov (United States)

    Robins, Marthony; Solomon, Justin; Sahbaee, Pooyan; Samei, Ehsan

    2016-04-01

    This study aimed to develop and compare two methods of inserting computerized virtual lesions into CT datasets. 24 physical (synthetic) nodules of three sizes and four morphologies were inserted into an anthropomorphic chest phantom (LUNGMAN, KYOTO KAGAKU). The phantom was scanned (Somatom Definition Flash, Siemens Healthcare) with and without nodules present, and images were reconstructed with filtered back projection and iterative reconstruction (SAFIRE) at 0.6 mm slice thickness using a standard thoracic CT protocol at multiple dose settings. Virtual 3D CAD models based on the physical nodules were virtually inserted (accounting for the system MTF) into the nodule-free CT data using two techniques. These techniques include projection-based and image-based insertion. Nodule volumes were estimated using a commercial segmentation tool (iNtuition, TeraRecon, Inc.). Differences were tested using paired t-tests and R2 goodness of fit between the virtually and physically inserted nodules. Both insertion techniques resulted in nodule volumes very similar to the real nodules (<3% difference) and in most cases the differences were not statistically significant. Also, R2 values were all <0.97 for both insertion techniques. These data imply that these techniques can confidently be used as a means of inserting virtual nodules in CT datasets. These techniques can be instrumental in building hybrid CT datasets composed of patient images with virtually inserted nodules.

  9. Comparison of 3D orientation distribution functions measured with confocal microscopy and diffusion MRI.

    Science.gov (United States)

    Schilling, Kurt; Janve, Vaibhav; Gao, Yurui; Stepniewska, Iwona; Landman, Bennett A; Anderson, Adam W

    2016-04-01

    The ability of diffusion MRI (dMRI) fiber tractography to non-invasively map three-dimensional (3D) anatomical networks in the human brain has made it a valuable tool in both clinical and research settings. However, there are many assumptions inherent to any tractography algorithm that can limit the accuracy of the reconstructed fiber tracts. Among them is the assumption that the diffusion-weighted images accurately reflect the underlying fiber orientation distribution (FOD) in the MRI voxel. Consequently, validating dMRI's ability to assess the underlying fiber orientation in each voxel is critical for its use as a biomedical tool. Here, using post-mortem histology and confocal microscopy, we present a method to perform histological validation of orientation functions in 3D, which has previously been limited to two-dimensional analysis of tissue sections. We demonstrate the ability to extract the 3D FOD from confocal z-stacks, and quantify the agreement between the MRI estimates of orientation information obtained using constrained spherical deconvolution (CSD) and the true geometry of the fibers. We find an orientation error of approximately 6° in voxels containing nearly parallel fibers, and 10-11° in crossing fiber regions, and note that CSD was unable to resolve fibers crossing at angles below 60° in our dataset. This is the first time that the 3D white matter orientation distribution is calculated from histology and compared to dMRI. Thus, this technique serves as a gold standard for dMRI validation studies - providing the ability to determine the extent to which the dMRI signal is consistent with the histological FOD, and to establish how well different dMRI models can predict the ground truth FOD. PMID:26804781

  10. Comparison and validation of gridded precipitation datasets for Spain

    Science.gov (United States)

    Quintana-Seguí, Pere; Turco, Marco; Míguez-Macho, Gonzalo

    2016-04-01

    In this study, two gridded precipitation datasets are compared and validated in Spain: the recently developed SAFRAN dataset and the Spain02 dataset. These are validated using rain gauges and they are also compared to the low resolution ERA-Interim reanalysis. The SAFRAN precipitation dataset has been recently produced, using the SAFRAN meteorological analysis, which is extensively used in France (Durand et al. 1993, 1999; Quintana-Seguí et al. 2008; Vidal et al., 2010) and which has recently been applied to Spain (Quintana-Seguí et al., 2015). SAFRAN uses an optimal interpolation (OI) algorithm and uses all available rain gauges from the Spanish State Meteorological Agency (Agencia Estatal de Meteorología, AEMET). The product has a spatial resolution of 5 km and it spans from September 1979 to August 2014. This dataset has been produced mainly to be used in large scale hydrological applications. Spain02 (Herrera et al. 2012, 2015) is another high quality precipitation dataset for Spain based on a dense network of quality-controlled stations and it has different versions at different resolutions. In this study we used the version with a resolution of 0.11°. The product spans from 1971 to 2010. Spain02 is well tested and widely used, mainly, but not exclusively, for RCM model validation and statistical downscliang. ERA-Interim is a well known global reanalysis with a spatial resolution of ˜79 km. It has been included in the comparison because it is a widely used product for continental and global scale studies and also in smaller scale studies in data poor countries. Thus, its comparison with higher resolution products of a data rich country, such as Spain, allows us to quantify the errors made when using such datasets for national scale studies, in line with some of the objectives of the EU-FP7 eartH2Observe project. The comparison shows that SAFRAN and Spain02 perform similarly, even though their underlying principles are different. Both products are largely

  11. 3-D Waveguide Effects of Topographical Structural Variation on Full Waveform Propagation: 3-D Finite Difference Modeling Comparisons with Field Data From Yuma Proving Ground, Arizona

    Science.gov (United States)

    Anderson, T. S.; Miller, R.; Greenfield, R.; Fisk, D.

    2002-12-01

    The propagation of seismic waves through regions of complex topography is not thoroughly understood. Surface waves, are of particular interest, as they are large in amplitude and can characterize the source depth, magnitude, and frequency content. The amplitude and frequency content of seismic waves that propagate in regions with large topographical variations are affected by both the scattering and blockage of the wave energy. The ability to predict the 3-d scattering due to topography will improve the understanding of both regional scale surface wave magnitudes, and refine surface wave discriminants as well as at the local scale (Smart Weapons Test Range, Yuma Proving Ground, Arizona. The result of the KGS characterization study is a high-resolution 3-d model that is used in our seismic simulations. The velocities Vs, Vp are calculated by tomography and refraction, attenuation coefficients estimated from the surface wave and from p-waves and are provided in a model with attributes resolved in 3-d to 0.5 meters. In the present work, we present comparisons of synthetic data with seismic data collected at the Smart Weapons Test Range to benchmark the accuracy achieved in simulating 3-d wave propagation in the vicinity of a topographical anomaly (trench). Synthetic seismograms are generated using a 3-d 8th order staggered grid visco-elastic finite difference code that accounts for topography. The geologic model is based on the Yuma site characterization. The size of these calculations required use of the DoD High Performance Computers and parallelized code. Results are compared with field data. Preliminary results show an excellent match with field data using the 3-d fdtd technique.

  12. Development of a 3D-based automated firearms evidence comparison system.

    Science.gov (United States)

    Bachrach, Benjamin

    2002-11-01

    Since the early 1990's, the idea of automated systems for the comparison of microscopic firearms evidence has received considerable attention. The main objective of such systems is to enable the analysis of large amounts of evidence, therefore, transforming the comparison of firearms evidence from an evidence verification tool into a crime-fighting tool. Two such systems have been widely used in United States forensic laboratories: namely, the Integrated Ballistics Identification System (IBIS) (1) and DRUGFIRE (2). Both IBIS and DRUGFIRE have in common the fact that their characterization of a specimen is based on a two-dimensional (2D) representation of the specimen's surface. Although these systems have provided satisfactory results in the identification of cartridge cases, their performance in the identification of bullets has not yet met firearms examiner's expectations. This project was motivated by the premise that a better characterizations of the bullet's surface should translate into better performance of automated identification systems. A three-dimensional (3D) characterization of the bullet's surface is proposed as an alternative to a 2D characterization. This paper discusses the development and preliminary results obtained with SciClops, an automated microscopic comparison system based on the use of a 3D characterization of a bullet's surface. PMID:12455646

  13. 3D MODELS COMPARISON OF COMPLEX SHELL IN UNDERWATER AND DRY ENVIRONMENTS

    Directory of Open Access Journals (Sweden)

    S. Troisi

    2015-04-01

    Full Text Available In marine biology the shape, morphology, texture and dimensions of the shells and organisms like sponges and gorgonians are very important parameters. For example, a particular type of gorgonian grows every year only few millimeters; this estimation was conducted without any measurement instrument but it has been provided after successive observational studies, because this organism is very fragile: the contact could compromise its structure and outliving. Non-contact measurement system has to be used to preserve such organisms: the photogrammetry is a method capable to assure high accuracy without contact. Nevertheless, the achievement of a 3D photogrammetric model of complex object (as gorgonians or particular shells is a challenge in normal environments, either with metric camera or with consumer camera. Indeed, the successful of automatic target-less image orientation and the image matching algorithms is strictly correlated to the object texture properties and of camera calibration quality as well. In the underwater scenario, the environment conditions strongly influence the results quality; in particular, water’s turbidity, the presence of suspension, flare and other optical aberrations decrease the image quality reducing the accuracy and increasing the noise on the 3D model. Furthermore, seawater density variability influences its refraction index and consequently the interior orientation camera parameters. For this reason, the camera calibration has to be performed in the same survey conditions. In this paper, a comparison between the 3D models of a Charonia Tritonis shell are carried out through surveys conducted both in dry and underwater environments.

  14. 3D stereoscopic analysis of a Coronal Mass Ejection and comparison with UV spectroscopic data

    CERN Document Server

    Susino, Roberto; Dolei, Sergio

    2014-01-01

    A three-dimensional (3D) reconstruction of the 2007, May 20 partial-halo Coronal Mass Ejection (CME) has been made using STEREO/EUVI and STEREO/COR1 coronagraphic images. The trajectory and kinematics of the erupting filament have been derived from EUVI image pairs with the "tie-pointing" triangulation technique, while the polarization ratio technique has been applied to COR1 data to determine the average position and depth of the CME front along the line of sight. These 3D geometrical information have been combined for the first time with spectroscopic measurements of the OVI $\\lambda\\lambda$1031.91, 1037.61 \\AA\\ line profiles made with the Ultraviolet Coronagraph Spectrometer (UVCS) on board SOHO. Comparison between the prominence trajectory extrapolated at the altitude of UVCS observations and the core transit time measured from UVCS data made possible a firm identification of the CME core observed in white light and UV with the prominence plasma expelled during the CME. Results on the 3D structure of the ...

  15. Dosimetric Comparison of 3D Tangential Radiotherapy of Post-Lumpectomy Breast at Two Different Energies

    Directory of Open Access Journals (Sweden)

    Robab Anbiaee

    2011-06-01

    Full Text Available Introduction: Radiation therapy following breast conserving surgery is one of the most common procedures performed in any radiation oncology department. A tangential parallel-opposed pair is almost always the technique of choice for this purpose. This technique is often performed based on 3D treatment planning. The aim of this study was to compare 3D treatment planning for two different energies (Cobalt 60 versus 6 MV photon beams in tangential irradiation of breast conserving radiotherapy. In this comparison, homogeneity of isodoses within the breast volume and dose received by lungs were considered. Materials and Methods: In this study, twenty patients with breast cancer treated with conservative surgery were included. A CT scan was performed on selected patients. Three-dimensional treatment planning with 6 MV photon beams was carried out for patients on the  Eclipse 3D treatment planning system (TPS. The volumes receiving lower than 95% (Vol105 (hot areas of the reference dose, and the volume of lung receiving ≥30Gy (Vol≥30Gy were derived from dose volume histograms (DVHs. Dose homogeneity index was calculated as: DHI = 100 – (Vol>105 + Vol

  16. Visualising the 3D Structure of Fine-Grained Estuarine Sediments; Preliminary Interpretations of a Novel Dataset Obtained via Volume Electron Microscopy

    Science.gov (United States)

    Wheatland, Jonathan; Bushby, Andy; Spencer, Kate; Carr, Simon

    2014-05-01

    Accurate measurement of the physical characteristics of sediment are critical to determining sediment transport behaviour and the stability of settled deposits. The properties (e.g. particle size, density, and settling velocity) of coarse-grained sediments (> 63 μm φ) can be easily characterised, hence their behaviour is relatively simple to predict and model. However, due to their small size and tendency to interact with their surrounding medium, the characteristics of fine sediments (laser microscopy (SCLM), conventional optical microscopy (COM), and transmission electron microscopy (TEM), to characterise fine sediments at both the gross (> 1 μm) and sub-micron scale (Droppo et al., 1996). Whilst this technique has proven insightful, the measurement of geometric properties (e.g. the shape of primary particles and their spatial arrangement) can only be achieved by three-dimensional (3D) analysis and the scale of observation for e.g. TEM does not overlap with those techniques used to characterise sediments at larger scales (100s to 1000s microns) (e.g. video analysis). Volume electron microscopy [or focused ion beam scanning electron microscopy (FIB-SEM)] provides 3D analysis at scales of 10s to 1000s microns and though widely used in cell biology, has not been used to observe sediment. FIB-SEM requires samples that are vacuum stable and a key challenge will be to capture fragile, hydrated sediment samples whilst preserving their structural integrity. The aims of this work are therefore: 1) to modify preparation techniques currently used in cell biology for the stabilization of sedimentary materials; 2) to acquire 3D datasets for both fragile suspended sediments (flocs) and consolidated bed sediments and 3) to interpret the 3D structure of these samples. In order to reduce alteration of the samples caused by dehydration, samples were first 'fixed' in 2.5% glutaraldehyde/2% formaldehyde before embedding in Durcupan, a hydrophobic epoxy resin. Pore water was then

  17. Multiresolution comparison of precipitation datasets for large-scale models

    Science.gov (United States)

    Chun, K. P.; Sapriza Azuri, G.; Davison, B.; DeBeer, C. M.; Wheater, H. S.

    2014-12-01

    Gridded precipitation datasets are crucial for driving large-scale models which are related to weather forecast and climate research. However, the quality of precipitation products is usually validated individually. Comparisons between gridded precipitation products along with ground observations provide another avenue for investigating how the precipitation uncertainty would affect the performance of large-scale models. In this study, using data from a set of precipitation gauges over British Columbia and Alberta, we evaluate several widely used North America gridded products including the Canadian Gridded Precipitation Anomalies (CANGRD), the National Center for Environmental Prediction (NCEP) reanalysis, the Water and Global Change (WATCH) project, the thin plate spline smoothing algorithms (ANUSPLIN) and Canadian Precipitation Analysis (CaPA). Based on verification criteria for various temporal and spatial scales, results provide an assessment of possible applications for various precipitation datasets. For long-term climate variation studies (~100 years), CANGRD, NCEP, WATCH and ANUSPLIN have different comparative advantages in terms of their resolution and accuracy. For synoptic and mesoscale precipitation patterns, CaPA provides appealing performance of spatial coherence. In addition to the products comparison, various downscaling methods are also surveyed to explore new verification and bias-reduction methods for improving gridded precipitation outputs for large-scale models.

  18. MODIS volcanic ash retrievals vs FALL3D transport model: a quantitative comparison

    Science.gov (United States)

    Corradini, S.; Merucci, L.; Folch, A.

    2010-12-01

    Satellite retrievals and transport models represents the key tools to monitor the volcanic clouds evolution. Because of the harming effects of fine ash particles on aircrafts, the real-time tracking and forecasting of volcanic clouds is key for aviation safety. Together with the security reasons also the economical consequences of a disruption of airports must be taken into account. The airport closures due to the recent Icelandic Eyjafjöll eruption caused millions of passengers to be stranded not only in Europe, but across the world. IATA (the International Air Transport Association) estimates that the worldwide airline industry has lost a total of about 2.5 billion of Euro during the disruption. Both security and economical issues require reliable and robust ash cloud retrievals and trajectory forecasting. The intercomparison between remote sensing and modeling is required to assure precise and reliable volcanic ash products. In this work we perform a quantitative comparison between Moderate Resolution Imaging Spectroradiometer (MODIS) retrievals of volcanic ash cloud mass and Aerosol Optical Depth (AOD) with the FALL3D ash dispersal model. MODIS, aboard the NASA-Terra and NASA-Aqua polar satellites, is a multispectral instrument with 36 spectral bands operating in the VIS-TIR spectral range and spatial resolution varying between 250 and 1000 m at nadir. The MODIS channels centered around 11 and 12 micron have been used for the ash retrievals through the Brightness Temperature Difference algorithm and MODTRAN simulations. FALL3D is a 3-D time-dependent Eulerian model for the transport and deposition of volcanic particles that outputs, among other variables, cloud column mass and AOD. Three MODIS images collected the October 28, 29 and 30 on Mt. Etna volcano during the 2002 eruption have been considered as test cases. The results show a general good agreement between the retrieved and the modeled volcanic clouds in the first 300 km from the vents. Even if the

  19. Mobile 3D rotational X-ray: comparison with CT in sinus surgery

    Energy Technology Data Exchange (ETDEWEB)

    Carelsen, B. [Dept. of Medical Physics, Academic Medical Center, Amsterdam (Netherlands); Bakker, N.H. [Dept. of Man-Machine Systems, Delft Univ. of Technology, Delft (Netherlands); Boon, S.N. [General X-ray Surgery, Philips Medical Systems, Best (Netherlands); Fokkens, W.J. [ENT Dept., Academic Medical Center, Amsterdam (Netherlands); Freling, N.J.M. [Radiology Dept., Academic Medical Center, Amsterdam (Netherlands); Noordhoek, N.J. [X-ray Pre-development, Philips Medical Systems, Best (Netherlands)

    2004-11-01

    Clinical evaluation of a 3D rotational X-ray (3D-RX) system, comprising a modified Philips BV Pulsera C-arm system and a Philips 3D-RA workstation, demonstrates good diagnostic accuracy in functional endoscopic sinus surgery.

  20. Comparison of a quasi-3D analysis and experimental performance for three compact radial turbines

    Science.gov (United States)

    Simonyi, P. S.; Boyle, R. J.

    1991-01-01

    An experimental aerodynamic evaluation of three compact radial turbine builds was performed. Two rotors which were 40-50 percent shorter in axial length than conventional state-of-the-art radial rotors were tested. A single nozzle design was used. One rotor was tested with the nozzle at two stagger angle settings. A second rotor was tested with the nozzle in only the closed down setting. Experimental results were compared to predicted results from a quasi-3D inviscid and boundary layer analysis, called MTSB (Meridl/Tsonic/Blayer). This analysis was used to predict turbine performance. It has previously been calibrated only for axial, not radial, turbomachinery. The predicted and measured efficiencies were compared at the design point for the three turbines. At the design points the analysis overpredicted the efficiency by less than 1.7 points. Comparisons were also made at off-design operating points. The results of these comparisons showed the importance of an accurate clearance model for efficiency predictions and also that there are deficiencies in the incidence loss model used.

  1. Comparison of 3D interest point detectors and descriptors for point cloud fusion

    OpenAIRE

    Hänsch, R.; T Weber; O. Hellwich

    2014-01-01

    The extraction and description of keypoints as salient image parts has a long tradition within processing and analysis of 2D images. Nowadays, 3D data gains more and more importance. This paper discusses the benefits and limitations of keypoints for the task of fusing multiple 3D point clouds. For this goal, several combinations of 3D keypoint detectors and descriptors are tested. The experiments are based on 3D scenes with varying properties, including 3D scanner data as well as Kin...

  2. Biological insights from topology independent comparison of protein 3D structures.

    Science.gov (United States)

    Nguyen, Minh N; Madhusudhan, M S

    2011-08-01

    Comparing and classifying the three-dimensional (3D) structures of proteins is of crucial importance to molecular biology, from helping to determine the function of a protein to determining its evolutionary relationships. Traditionally, 3D structures are classified into groups of families that closely resemble the grouping according to their primary sequence. However, significant structural similarities exist at multiple levels between proteins that belong to these different structural families. In this study, we propose a new algorithm, CLICK, to capture such similarities. The method optimally superimposes a pair of protein structures independent of topology. Amino acid residues are represented by the Cartesian coordinates of a representative point (usually the C(α) atom), side chain solvent accessibility, and secondary structure. Structural comparison is effected by matching cliques of points. CLICK was extensively benchmarked for alignment accuracy on four different sets: (i) 9537 pair-wise alignments between two structures with the same topology; (ii) 64 alignments from set (i) that were considered to constitute difficult alignment cases; (iii) 199 pair-wise alignments between proteins with similar structure but different topology; and (iv) 1275 pair-wise alignments of RNA structures. The accuracy of CLICK alignments was measured by the average structure overlap score and compared with other alignment methods, including HOMSTRAD, MUSTANG, Geometric Hashing, SALIGN, DALI, GANGSTA(+), FATCAT, ARTS and SARA. On average, CLICK produces pair-wise alignments that are either comparable or statistically significantly more accurate than all of these other methods. We have used CLICK to uncover relationships between (previously) unrelated proteins. These new biological insights include: (i) detecting hinge regions in proteins where domain or sub-domains show flexibility; (ii) discovering similar small molecule binding sites from proteins of different folds and (iii

  3. Evaluation of failing hemodialysis fistulas with multidetector CT angiography: Comparison of different 3D planes

    Energy Technology Data Exchange (ETDEWEB)

    Karadeli, E. [Department of Radiology, Baskent University, Faculty of Medicine, Ankara (Turkey); Tarhan, N.C. [Department of Radiology, Baskent University, Faculty of Medicine, Ankara (Turkey)], E-mail: caglat@baskent-ank.edu.tr; Ulu, E.M. Kayahan; Tutar, N.U. [Department of Radiology, Baskent University, Faculty of Medicine, Ankara (Turkey); Basaran, O. [Department of General Surgery, Baskent University, Faculty of Medicine, Ankara (Turkey); Coskun, M.; Niron, E.A. [Department of Radiology, Baskent University, Faculty of Medicine, Ankara (Turkey)

    2009-01-15

    Purpose: To evaluate failing hemodialysis fistula complications using 16-detector MDCTA, and to assess the accuracies of different 3D planes. Materials and methods: Thirty patients (16 men, 14 women, aged 27-79 years) were referred for hemodialysis access dysfunction. Thirty-one MDCTA exams were done prior to fistulography. For MDCTA, contrast was administered (2 mL/kg at 5 mL/s) via a peripheral vein in the contralateral arm. Axial MIP, coronal MIP, and VRT images were constructed. Venous complications were evaluated on axial source images, on each 3D plane, and on all-planes together. Results were analyzed using McNemar test. Results: Axial MIP, VRT and all-planes evaluations were most sensitive for fistula site detection (93%). Coronal MIP had the highest sensitivity, specificity and accuracy (35%, 96%, and 85%, respectively) for detecting venous stenosis. VRT and all-planes had the highest sensitivity and accuracy for detecting aneurysms (100%). All-planes and axial MIP were most sensitive for detecting venous occlusion (61% and 54%). Comparisons of detection frequencies for each venous pathology between the five categories of MDCTA revealed no significant differences (P > 0.05). MDCTA additionally showed 3 partially thrombosed aneurysms, 4 anastomosis site stenosis and 12 arterial complications. Conclusion: MDCTA overall gives low sensitivity for detection of central vein stenosis and moderate sensitivity for occlusion. For most pathology, all-planes evaluation of MDCTA gives highest sensitivity and accuracy rates when compared to other planes. For venous stenosis and occlusion, MDCTA should be considered when ultrasonography and fistulography are inconclusive. MDCTA is helpful in identifying aneurysms, collaterals, partial venous thromboses and additional arterial, anastomosis site pathologies.

  4. Comparison of 3D interest point detectors and descriptors for point cloud fusion

    Science.gov (United States)

    Hänsch, R.; Weber, T.; Hellwich, O.

    2014-08-01

    The extraction and description of keypoints as salient image parts has a long tradition within processing and analysis of 2D images. Nowadays, 3D data gains more and more importance. This paper discusses the benefits and limitations of keypoints for the task of fusing multiple 3D point clouds. For this goal, several combinations of 3D keypoint detectors and descriptors are tested. The experiments are based on 3D scenes with varying properties, including 3D scanner data as well as Kinect point clouds. The obtained results indicate that the specific method to extract and describe keypoints in 3D data has to be carefully chosen. In many cases the accuracy suffers from a too strong reduction of the available points to keypoints.

  5. Comparison of 2D and 3D GUI Widgets for Stereoscopic Multitouch Setups

    OpenAIRE

    Zilch, David; Bruder, Gerd; Steinicke, Frank

    2014-01-01

    Recent developments in the area of interactive entertainment have suggested to combine stereoscopic visualization with multi-touch displays, which has the potential to open up new vistas for natural interaction with interactive three-dimensional (3D) applications. However, the question arises how the user interfaces for system control in such 3D setups should be designed in order to provide an effective user experience. In this article we introduce 3D GUI widgets for interaction with stereosc...

  6. Comparison between 3D Supersonic Shear Wave Elastography and Magnetic Resonance Elastography: a preliminary experimental study

    OpenAIRE

    Yue, Jinlong; Tardieu, Marion; Julea, Felicia; Chami, Linda; Lucidarme, Olivier; Maître, Xavier; Pellot-Barakat, Claire

    2015-01-01

    Ultrasound Supersonic Shear Wave Elastog-raphy (SSWE) as well as Magnetic Resonance Elastography (MRE) allow accessing the mechanical properties of human tissues. SSWE is usually performed using a 2D probe. 3D SSWE is now available but needs to be validated. We compared 3D SSWE with both 2D SSWE and MRE which is inherently 3D on a breast phantom. We found that 3D SSWE is reproducible and provides elasticity estimates comparable to those obtained with the validated 2D SSWE. We also showed that...

  7. 3D representations of amino acids—applications to protein sequence comparison and classification

    Directory of Open Access Journals (Sweden)

    Jie Li

    2014-08-01

    Full Text Available The amino acid sequence of a protein is the key to understanding its structure and ultimately its function in the cell. This paper addresses the fundamental issue of encoding amino acids in ways that the representation of such a protein sequence facilitates the decoding of its information content. We show that a feature-based representation in a three-dimensional (3D space derived from amino acid substitution matrices provides an adequate representation that can be used for direct comparison of protein sequences based on geometry. We measure the performance of such a representation in the context of the protein structural fold prediction problem. We compare the results of classifying different sets of proteins belonging to distinct structural folds against classifications of the same proteins obtained from sequence alone or directly from structural information. We find that sequence alone performs poorly as a structure classifier. We show in contrast that the use of the three dimensional representation of the sequences significantly improves the classification accuracy. We conclude with a discussion of the current limitations of such a representation and with a description of potential improvements.

  8. 3-D microphysical model studies of Arctic denitrification: comparison with observations

    Directory of Open Access Journals (Sweden)

    S. Davies

    2005-01-01

    Full Text Available Simulations of Arctic denitrification using a 3-D chemistry-microphysics transport model are compared with observations for the winters 1994/1995, 1996/1997 and 1999/2000. The model of Denitrification by Lagrangian Particle Sedimentation (DLAPSE couples the full chemical scheme of the 3-D chemical transport model, SLIMCAT, with a nitric acid trihydrate (NAT growth and sedimentation scheme. We use observations from the Microwave Limb Sounder (MLS and Improved Limb Atmospheric Sounder (ILAS satellite instruments, the balloon-borne Michelsen Interferometer for Passive Atmospheric Sounding (MIPAS-B, and the in situ NOy instrument on-board the ER-2. As well as directly comparing model results with observations, we also assess the extent to which these observations are able to validate the modelling approach taken. For instance, in 1999/2000 the model captures the temporal development of denitrification observed by the ER-2 from late January into March. However, in this winter the vortex was already highly denitrified by late January so the observations do not provide a strong constraint on the modelled rate of denitrification. The model also reproduces the MLS observations of denitrification in early February 2000. In 1996/1997 the model captures the timing and magnitude of denitrification as observed by ILAS, although the lack of observations north of ~67° N make it difficult to constrain the actual timing of onset. The comparison for this winter does not support previous conclusions that denitrification must be caused by an ice-mediated process. In 1994/1995 the model notably underestimates the magnitude of denitrification observed during a single balloon flight of the MIPAS-B instrument. Agreement between model and MLS HNO3 at 68 hPa in mid-February 1995 was significantly better. Sensitivity tests show that a 1.5 K overall decrease in vortex temperatures or a factor 4 increase in assumed NAT nucleation rates produce the best

  9. Comparison of 3D turbulence measurements using three staring wind lidars and a sonic anemometer

    DEFF Research Database (Denmark)

    Mann, Jakob; Cariou, J.-P.; Courtney, Michael;

    2008-01-01

    Three pulsed lidars were used in staring, non-scanning mode, placed so that their beams crossed close to a 3D sonic anemometer. The goal is to compare lidar volume averaged wind measurement with point measurement reference sensors and to demonstrate the feasibility of performing 3D turbulence...

  10. 3D reconstruction of carotid atherosclerotic plaque: comparison between spatial compound ultrasound models and anatomical models

    DEFF Research Database (Denmark)

    Lind, Bo L.; Fagertun, Jens; Wilhjelm, Jens E.;

    2007-01-01

    This study deals with the creation of 3D models that can work as a tool for discriminating between tissue and background in the development of tissue classification methods. Ten formalin-fixed atherosclerotic carotid plaques removed by endarterectomy were scanned with 3D multi-angle spatial...... compound ultrasound (US) and subsequently sliced and photographed to produce a 3D anatomical data set. Outlines in the ultrasound data were found by means of active contours and combined into 10 3D ultrasound models. The plaque regions of the anatomical photographs were outlined manually and then combined...... into 10 3D anatomical models. The volumes of the anatomical models correlated with the volume found by a water displacement method (r = 0.95), except for an offset. The models were compared in three ways. Visual inspection showed quite good agreement between the models. The volumes of the ultrasound...

  11. Active remote sensing of snow using NMM3D/DMRT and comparison with CLPX II airborne data

    Science.gov (United States)

    Xu, X.; Liang, D.; Tsang, L.; Andreadis, K.M.; Josberger, E.G.; Lettenmaier, D.P.; Cline, D.W.; Yueh, S.H.

    2010-01-01

    We applied the Numerical Maxwell Model of three-dimensional simulations (NMM3D) in the Dense Media Radiative Theory (DMRT) to calculate backscattering coefficients. The particles' positions are computer-generated and the subsequent Foldy-Lax equations solved numerically. The phase matrix in NMM3D has significant cross-polarization, particularly when the particles are densely packed. The NMM3D model is combined with DMRT in calculating the microwave scattering by dry snow. The NMM3D/DMRT equations are solved by an iterative solution up to the second order in the case of small to moderate optical thickness. The numerical results of NMM3D/DMRT are illustrated and compared with QCA/DMRT. The QCA/DMRT and NMM3D/DMRT results are also applied to compare with data from two specific datasets from the second Cold Land Processes Experiment (CLPX II) in Alaska and Colorado. The data are obtained at the Ku-band (13.95 GHz) observations using airborne imaging polarimetric scatterometer (POLSCAT). It is shown that the model predictions agree with the field measurements for both co-polarization and cross-polarization. For the Alaska region, the average snow depth and snow density are used as the inputs for DMRT. The grain size, selected from within the range of the ground measurements, is used as a best-fit parameter within the range. For the Colorado region, we use the Variable Infiltration Capacity Model (VIC) to obtain the input snow profiles for NMM3D/DMRT. ?? 2010 IEEE.

  12. Review and comparison of temporal- and spatial-phase shift speckle pattern interferometry for 3D deformation measurement

    Science.gov (United States)

    Xie, Xin; Yang, Lianxiang; Chen, Xu; Xu, Nan; Wang, Yonghong

    2013-10-01

    High accuracy full field three dimensional (3D) deformation measurements have always been an essential problem for the manufacturing, instrument, and aerospace industry. 3D deformations, which can be translated further into 3D strain and stress, are the key parameter for design, manufacturing and quality control. Due to the fast development of the manufacturing industry, especially in the automobile and airspace industry, rapid design and optimization concepts have already widely accepted. These concepts all require the support of rapid, high sensitive and accuracy 3D deformation measurement. Advanced optical methods are gaining widely acceptance for deformation and stain measurement by industry due to the advantages of non-contact, full-field and high measurement sensitivity. Of these methods, Electronic Speckle Pattern Interferometry (ESPI) is the most sensitive and accurate method for 3D deformation measurement in micro and sub micro-level. ESPI measures deformation by evaluating the phase difference of two recorded speckle interferograms under different loading conditions. Combined with a phase shift technique, ESPI systems can measure the 3D deformation with dozens of nanometer level sensitivity. Cataloged by phase calculation methods, ESPI systems can be divided into temporal phase shift ESPI systems and spatial phase shift ESPI system. This article provides a review and a comparison of temporal and spatial phase shift speckle pattern interferometry for 3D deformation measurement. After an overview of the fundamentals of ESPI theory, temporal phase-shift and spatial phase-shift techniques, 3D deformation measurements by the temporal phase-shift ESPI which is suited well for static measurement and by the spatial phase-shift ESPI which is particularly useful for dynamic measurement will be discussed in detail. Basic theory, brief derivation and different optical layouts for the two systems will be presented. The potentials and limitations of the both ESPI

  13. Sonographic measurement of thyroid gland volume: A comparison of 2D and 3D ultrasound

    Energy Technology Data Exchange (ETDEWEB)

    Ying, Michael [Department of Optometry and Radiography, Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong (China)]. E-mail: ormying@polyu.edu.hk; Sin Manhong [Department of Optometry and Radiography, Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong (China); Pang, Shuk-fan [Department of Optometry and Radiography, Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong (China)

    2005-11-01

    Aims: This study was undertaken to investigate the inter-observer reproducibility of 2D and 3D ultrasound in the measurement of thyroid gland volume. The symmetry of thyroid lobes in healthy subjects was also investigated. Materials and methods: The volume of the left and right lobes of the thyroid gland was measured in 20 healthy subjects (10 men and 10 women) using 2D and 3D ultrasound. On 2D ultrasound, the thyroid lobe volume was calculated by ellipsoid equation (volume = {pi}/6 x craniocaudal x mediolateral x anteroposterior dimensions), whereas 3D ultrasound volumetric measurements were performed with a 3D add-on system. In each subject, the thyroid gland was scanned by two operators to investigate inter-observer variability. Results: There was a moderate agreement between 2D and 3D ultrasound in the measurement of thyroid volume (r = 0.77). 3D ultrasound (90%) had a higher inter-observer reproducibility than 2D ultrasound (85%) in the measurements. About 74% of healthy subjects had the right thyroid lobe larger than the left lobe. Conclusion: 3D ultrasound is useful in the measurement of thyroid volume with a higher reproducibility than 2D ultrasound. Asymmetry of thyroid lobes was noted in healthy subjects.

  14. Comparison and functional implications of the 3D architectures of viral tRNA-like structures.

    Science.gov (United States)

    Hammond, John A; Rambo, Robert P; Filbin, Megan E; Kieft, Jeffrey S

    2009-02-01

    RNA viruses co-opt the host cell's biological machinery, and their infection strategies often depend on specific structures in the viral genomic RNA. Examples are tRNA-like structures (TLSs), found at the 3' end of certain plant viral RNAs, which can use the cell's aminoacyl tRNA-synthetases (AARSs) to drive addition of an amino acid to the 3' end of the viral RNA. TLSs are multifunctional RNAs involved in processes such as viral replication, translation, and viral RNA stability; these functions depend on their fold. Experimental result-based structural models of TLSs have been published. In this study, we further examine these structures using a combination of biophysical and biochemical approaches to explore the three-dimensional (3D) architectures of TLSs from the turnip yellow mosaic virus (TYMV), tobacco mosaic virus (TMV), and brome mosaic virus (BMV). We find that despite similar function, these RNAs are biophysically diverse: the TYMV TLS adopts a characteristic tRNA-like L shape, the BMV TLS has a large compact globular domain with several helical extensions, and the TMV TLS aggregates in solution. Both the TYMV and BMV TLS RNAs adopt structures with tight backbone packing and also with dynamic structural elements, suggesting complexities and subtleties that cannot be explained by simple tRNA mimicry. These results confirm some aspects of existing models and also indicate how these models can be improved. The biophysical characteristics of these TLSs show how these multifunctional RNAs might regulate various viral processes, including negative strand synthesis, and also allow comparison with other structured RNAs. PMID:19144910

  15. Visualization of cranial nerves by MR cisternography using 3D FASE. Comparison with 2D FSE

    Energy Technology Data Exchange (ETDEWEB)

    Asakura, Hirofumi; Nakano, Satoru; Togami, Taro [Kagawa Medical School, Miki (Japan)] (and others)

    2001-03-01

    MR cisternography using 3D FASE was compared with that of 2D FSE in regard to visualization of normal cranial nerves. In a phantom study, contrast-to-noise ratio (C/N) of fine structures was better in 3D FASE images than in 2D FSE. In clinical cases, visualization of trigeminal nerve, abducent nerve, and facial/vestibulo-cochlear nerve were evaluated. Each cranial nerve was visualized better in 3D FASE images than in 2D FSE, with a significant difference (p<0.05). (author)

  16. 3D digitization methods based on laser excitation and active triangulation: a comparison

    Science.gov (United States)

    Aubreton, Olivier; Mériaudeau, Fabrice; Truchetet, Frédéric

    2016-04-01

    3D reconstruction of surfaces is an important topic in computer vision and corresponds to a large field of applications: industrial inspection, reverse engineering, object recognition, biometry, archeology… Because of the large varieties of applications, one can find in the literature a lot of approaches which can be classified into two families: passive and active [1]. Certainly because of their reliability, active approaches, using imaging system with an additional controlled light source, seem to be the most commonly used in the industrial field. In this domain, the 3D digitization approach based on active 3D triangulation has had important developments during the last ten years [2] and seems to be mature today if considering the important number of systems proposed by manufacturers. Unfortunately, the performances of active 3D scanners depend on the optical properties of the surface to digitize. As an example, on Fig 1.a, a 3D shape with a diffuse surface has been digitized with Comet V scanner (Steinbichler). The 3D reconstruction is presented on Fig 1.b. The same experiment was carried out on a similar object (same shape) but presenting a specular surface (Fig 1.c and Fig 1.d) ; it can clearly be observed, that the specularity influences of the performance of the digitization.

  17. a Comparison Between Active and Passive Techniques for Underwater 3d Applications

    Science.gov (United States)

    Bianco, G.; Gallo, A.; Bruno, F.; Muzzupappa, M.

    2011-09-01

    In the field of 3D scanning, there is an increasing need for more accurate technologies to acquire 3D models of close range objects. Underwater exploration, for example, is very hard to perform due to the hostile conditions and the bad visibility of the environment. Some application fields, like underwater archaeology, require to recover tridimensional data of objects that cannot be moved from their site or touched in order to avoid possible damages. Photogrammetry is widely used for underwater 3D acquisition, because it requires just one or two digital still or video cameras to acquire a sequence of images taken from different viewpoints. Stereo systems composed by a pair of cameras are often employed on underwater robots (i.e. ROVs, Remotely Operated Vehicles) and used by scuba divers, in order to survey archaeological sites, reconstruct complex 3D structures in aquatic environment, estimate in situ the length of marine organisms, etc. The stereo 3D reconstruction is based on the triangulation of corresponding points on the two views. This requires to find in both images common points and to match them (correspondence problem), determining a plane that contains the 3D point on the object. Another 3D technique, frequently used in air acquisition, solves this point-matching problem by projecting structured lighting patterns to codify the acquired scene. The corresponding points are identified associating a binary code in both images. In this work we have tested and compared two whole-field 3D imaging techniques (active and passive) based on stereo vision, in underwater environment. A 3D system has been designed, composed by a digital projector and two still cameras mounted in waterproof housing, so that it can perform the various acquisitions without changing the configuration of optical devices. The tests were conducted in a water tank in different turbidity conditions, on objects with different surface properties. In order to simulate a typical seafloor, we used

  18. A COMPARISON BETWEEN ACTIVE AND PASSIVE TECHNIQUES FOR UNDERWATER 3D APPLICATIONS

    Directory of Open Access Journals (Sweden)

    G. Bianco

    2012-09-01

    Full Text Available In the field of 3D scanning, there is an increasing need for more accurate technologies to acquire 3D models of close range objects. Underwater exploration, for example, is very hard to perform due to the hostile conditions and the bad visibility of the environment. Some application fields, like underwater archaeology, require to recover tridimensional data of objects that cannot be moved from their site or touched in order to avoid possible damages. Photogrammetry is widely used for underwater 3D acquisition, because it requires just one or two digital still or video cameras to acquire a sequence of images taken from different viewpoints. Stereo systems composed by a pair of cameras are often employed on underwater robots (i.e. ROVs, Remotely Operated Vehicles and used by scuba divers, in order to survey archaeological sites, reconstruct complex 3D structures in aquatic environment, estimate in situ the length of marine organisms, etc. The stereo 3D reconstruction is based on the triangulation of corresponding points on the two views. This requires to find in both images common points and to match them (correspondence problem, determining a plane that contains the 3D point on the object. Another 3D technique, frequently used in air acquisition, solves this point-matching problem by projecting structured lighting patterns to codify the acquired scene. The corresponding points are identified associating a binary code in both images. In this work we have tested and compared two whole-field 3D imaging techniques (active and passive based on stereo vision, in underwater environment. A 3D system has been designed, composed by a digital projector and two still cameras mounted in waterproof housing, so that it can perform the various acquisitions without changing the configuration of optical devices. The tests were conducted in a water tank in different turbidity conditions, on objects with different surface properties. In order to simulate a typical

  19. Comparison of Eight Different Precipitation Datasets for South America

    Science.gov (United States)

    Pinto, L. C.; Costa, M. H.; Diniz, L. F.

    2007-05-01

    Long and continuous meteorological data series for large areas are hard to obtain, so several groups have developed climate datasets generated through the combination of models and observed and remote sensing data, including reanalysis products. This study compares eight different precipitation datasets for South America (NCEP/NCAR-2, ERA-40, CMAP, GPCP, CRU, CPTEC, TRMM, Legates and Willmott, Leemans and Cramer). For each dataset, we analyze the four moments of the data distribution (mean, variance, skewness, kurtosis), for latitudinal variation, for the major river basins and for the major vegetation types in the continent, allowing to identify the geographical variations in each dataset. We verified that significant differences exist among the precipitation products.

  20. Comparison of optimized 3D-SPACE and 3D-TSE sequences at 1.5T MRCP in the diagnosis of choledocholithiasis

    Energy Technology Data Exchange (ETDEWEB)

    Sudholt, P. [University Hospital Marburg (Germany). Dept. of Diagnostic and Interventional Radiology; Zaehringer, C.; Tyndall, A.; Bongartz, G.; Hohmann, J. [University Hospital Basel (Switzerland). Clinic for Radiology and Nuclear Medicine; Urigo, C. [Ars Medica Clinic, Gravesano-Lugano (Switzerland). Radiology

    2015-06-15

    The aim of the study was to evaluate whether or not MRCP using a 3D-SPACE sequence allows for better image quality and a higher level of diagnostic confidence than a conventional 3D-TSE sequence at 1.5T regarding the diagnosis of choledocholithiasis in a routine clinical setting. 3D-SPACE and 3D-TSE sequences were performed in 42 consecutive patients with suspected choledocholithiasis undergoing MRCP. Evaluation of image quality and diagnostic confidence was done on the pancreaticobiliary tree which was subdivided into 10 segments. They were scored and statistically evaluated separately for visibility and diagnostic certainty by three radiologists with differing levels of experience on a five-point scale of 1 to 5 and -2 to 2, respectively. Student t-test was performed, and the interobserver agreement was also calculated. Image quality for each segment was significantly better for the 3D-SPACE sequence compared to the 3D-TSE sequence (4.48±0.94 vs. 3.98±1.20; 5-point scale p<0.01). Diagnostic confidence for the reporting radiologist was also significantly better for 3D-SPACE than for 3D-TSE (1.68±0.56 vs. 1.46±0.70; 3-point scale; p<0.01). The interobserver agreement was high in both sequences, 0.62-0.83 and 0.64-0.82, respectively. The optimized 3D-SPACE sequence allows for better image quality in 1.5T MRCP examinations and leads to a higher diagnostic confidence for choledocholithiasis compared to the conventional 3D-TSE sequence.

  1. Validation of the BISON 3D Fuel Performance Code: Temperature Comparisons for Concentrically and Eccentrically Located Fuel Pellets

    Energy Technology Data Exchange (ETDEWEB)

    J. D. Hales; D. M. Perez; R. L. Williamson; S. R. Novascone; B. W. Spencer

    2013-03-01

    BISON is a modern finite-element based nuclear fuel performance code that has been under development at the Idaho National Laboratory (USA) since 2009. The code is applicable to both steady and transient fuel behaviour and is used to analyse either 2D axisymmetric or 3D geometries. BISON has been applied to a variety of fuel forms including LWR fuel rods, TRISO-coated fuel particles, and metallic fuel in both rod and plate geometries. Code validation is currently in progress, principally by comparison to instrumented LWR fuel rods. Halden IFA experiments constitute a large percentage of the current BISON validation base. The validation emphasis here is centreline temperatures at the beginning of fuel life, with comparisons made to seven rods from the IFA-431 and 432 assemblies. The principal focus is IFA-431 Rod 4, which included concentric and eccentrically located fuel pellets. This experiment provides an opportunity to explore 3D thermomechanical behaviour and assess the 3D simulation capabilities of BISON. Analysis results agree with experimental results showing lower fuel centreline temperatures for eccentric fuel with the peak temperature shifted from the centreline. The comparison confirms with modern 3D analysis tools that the measured temperature difference between concentric and eccentric pellets is not an artefact and provides a quantitative explanation for the difference.

  2. A Comparison of Radiation Dose Between Standard and 3D Angiography in Congenital Heart Disease

    Energy Technology Data Exchange (ETDEWEB)

    Manica, João Luiz Langer, E-mail: joca.pesquisa@gmail.com; Borges, Mônica Scott; Medeiros, Rogério Fachel de; Fischer, Leandro dos Santos; Broetto, Gabriel; Rossi, Raul Ivo Filho [Instituto de Cardiologia / Fundação Universitária de Cardiologia, Porto Alegre, RS (Brazil)

    2014-08-15

    The use of three-dimensional rotational angiography (3D-RA) to assess patients with congenital heart diseases appears to be a promising technique despite the scarce literature available. The objective of this study was to describe our initial experience with 3D-RA and to compare its radiation dose to that of standard two-dimensional angiography (2D-SA). Between September 2011 and April 2012, 18 patients underwent simultaneous 3D-RA and 2D-SA during diagnostic cardiac catheterization. Radiation dose was assessed using the dose-area-product (DAP). The median patient age and weight were 12.5 years and 47.5 Kg, respectively. The median DAP of each 3D-RA acquisition was 1093µGy.m{sup 2} and 190µGy.m{sup 2} for each 2D-SA acquisition (p<0.01). In patients weighing more than 45Kg (n=7), this difference was attenuated but still significant (1525 µGy.m{sup 2} vs.413µGy.m{sup 2}, p=0.01). No difference was found between one 3D-RA and three 2D-SA (1525µGy.m{sup 2} vs.1238 µGy.m{sup 2}, p = 0.575) in this population. This difference was significantly higher in patients weighing less than 45Kg (n=9) (713µGy.m{sup 2} vs.81µGy.m{sup 2}, P = 0.008), even when comparing one 3D-RA with three 2D-SA (242µGy.m{sup 2}, respectively, p<0.008). 3D-RA was extremely useful for the assessment of conduits of univentricular hearts, tortuous branches of the pulmonary artery, and aorta relative to 2D-SA acquisitions. The radiation dose of 3D-RA used in our institution was higher than those previously reported in the literature and this difference was more evident in children. This type of assessment is of paramount importance when starting to perform 3D-RA.

  3. 3D-Conformal Versus Intensity-Modulated Postoperative Radiotherapy of Vaginal Vault: A Dosimetric Comparison

    International Nuclear Information System (INIS)

    We evaluated a step-and-shoot IMRT plan in the postoperative irradiation of the vaginal vault compared with equispaced beam arrangements (3-5) 3D-radiotherapy (RT) optimized plans. Twelve patients were included in this analysis. Four plans for each patient were compared in terms of dose-volume histograms, homogeneity index (HI), and conformity index (CI): (1) 3 equispaced beam arrangement 3D-RT; (2) 4 equispaced beam arrangement 3D-RT; (3) 5 equispaced beam arrangement 3D-RT; (4) step-and-shoot IMRT technique. CI showed a good discrimination between the four plans. The mean scores of CI were 0.58 (range: 0.38-0.67) for the 3F-CRT plan, 0.58 (range: 0.41-0.66) for 4F-CRT, 0.62 (range: 0.43-0.68) for 5F-CRT and 0.69 (range: 0.58-0.78) for the IMRT plan. A significant improvement of the conformity was reached by the IMRT plan (p mean, V90%, V95%, V100% was recorded for rectal and bladder irradiation with the IMRT plan. Surprisingly, IMRT supplied a significant dose reduction also for rectum and bladder V30% and V50%. A significant dosimetric advantage of IMRT over 3D-RT in the adjuvant treatment of vaginal vault alone in terms of treatment conformity and rectum and bladder sparing is shown.

  4. Comparison of Tomo-PIV and 3D-PTV for microfluidic flows

    Science.gov (United States)

    Kim, Hyoungsoo; Westerweel, Jerry; Elsinga, Gerrit E.

    2013-02-01

    Two 3D-3C velocimetry techniques for micro-scale measurements are compared: tomographic particle image velocimetry (Tomo-PIV) and 3D particle-tracking velocimetry (3D-PTV). Both methods are applied to experimental data from a confined shear-driven liquid droplet over a moving surface. The droplet has 200 μm height and 2 mm diameter. Micro 3D-PTV and Tomo-PIV are used to obtain the tracer particle distribution and the flow velocity field for the same set of images. It is shown that the reconstructed particle distributions are distinctly different, where Tomo-PIV returns a nearly uniform distribution over the height of the volume, as expected, and PTV reveals a clear peak in the particle distribution near the plane of focus. In Tomo-PIV, however, the reconstructed particle peak intensity decreases in proportion to the distance from the plane of focus. Due to the differences in particle distributions, the measured flow velocities are also different. In particular, we observe Tomo-PIV to be in closer agreement with mass conservation. Furthermore, the random noise level is found to increase with distance to the plane of focus at a higher rate for 3D-PTV as compared to Tomo-PIV. Thus, for a given noise threshold value, the latter method can measure reliably over a thicker volume.

  5. Late gadolinium enhancement cardiac imaging on a 3T scanner with parallel RF transmission technique: prospective comparison of 3D-PSIR and 3D-IR

    Energy Technology Data Exchange (ETDEWEB)

    Schultz, Anthony [Nouvel Hopital Civil, Strasbourg University Hospital, Radiology Department, Strasbourg Cedex (France); Nouvel Hopital Civil, Service de Radiologie, Strasbourg Cedex (France); Caspar, Thibault [Nouvel Hopital Civil, Strasbourg University Hospital, Cardiology Department, Strasbourg Cedex (France); Schaeffer, Mickael [Nouvel Hopital Civil, Strasbourg University Hospital, Public Health and Biostatistics Department, Strasbourg Cedex (France); Labani, Aissam; Jeung, Mi-Young; El Ghannudi, Soraya; Roy, Catherine [Nouvel Hopital Civil, Strasbourg University Hospital, Radiology Department, Strasbourg Cedex (France); Ohana, Mickael [Nouvel Hopital Civil, Strasbourg University Hospital, Radiology Department, Strasbourg Cedex (France); Universite de Strasbourg / CNRS, UMR 7357, iCube Laboratory, Illkirch (France)

    2016-06-15

    To qualitatively and quantitatively compare different late gadolinium enhancement (LGE) sequences acquired at 3T with a parallel RF transmission technique. One hundred and sixty participants prospectively enrolled underwent a 3T cardiac MRI with 3 different LGE sequences: 3D Phase-Sensitive Inversion-Recovery (3D-PSIR) acquired 5 minutes after injection, 3D Inversion-Recovery (3D-IR) at 9 minutes and 3D-PSIR at 13 minutes. All LGE-positive patients were qualitatively evaluated both independently and blindly by two radiologists using a 4-level scale, and quantitatively assessed with measurement of contrast-to-noise ratio and LGE maximal surface. Statistical analyses were calculated under a Bayesian paradigm using MCMC methods. Fifty patients (70 % men, 56yo ± 19) exhibited LGE (62 % were post-ischemic, 30 % related to cardiomyopathy and 8 % post-myocarditis). Early and late 3D-PSIR were superior to 3D-IR sequences (global quality, estimated coefficient IR > early-PSIR: -2.37 CI = [-3.46; -1.38], prob(coef > 0) = 0 % and late-PSIR > IR: 3.12 CI = [0.62; 4.41], prob(coef > 0) = 100 %), LGE surface estimated coefficient IR > early-PSIR: -0.09 CI = [-1.11; -0.74], prob(coef > 0) = 0 % and late-PSIR > IR: 0.96 CI = [0.77; 1.15], prob(coef > 0) = 100 %. Probabilities for late PSIR being superior to early PSIR concerning global quality and CNR were over 90 %, regardless of the aetiological subgroup. In 3T cardiac MRI acquired with parallel RF transmission technique, 3D-PSIR is qualitatively and quantitatively superior to 3D-IR. (orig.)

  6. Comparison of a unidirectional panoramic 3D endoluminal interpretation technique to traditional 2D and bidirectional 3D interpretation techniques at CT colonography: preliminary observations

    Energy Technology Data Exchange (ETDEWEB)

    Lenhart, D.K.; Babb, J.; Bonavita, J.; Kim, D. [Department of Radiology, NYU Medical Center, 560 First Avenue, Suite HW-202, New York, NY 10016 (United States); Bini, E.J. [Department of Medicine, NYU School of Medicine, NYU Medical Center, 560 First Avenue, Suite HW-202, New York, NY 10016 (United States); Megibow, A.J. [Department of Radiology, NYU Medical Center, 560 First Avenue, Suite HW-202, New York, NY 10016 (United States); Macari, M., E-mail: michael.macari@med.nyu.ed [Department of Radiology, NYU Medical Center, 560 First Avenue, Suite HW-202, New York, NY 10016 (United States)

    2010-02-15

    Aim: To compare the evaluation times and accuracy of unidirectional panoramic three-dimensional (3D) endoluminal interpretation to traditional two-dimensional (2D) and bidirectional 3D endoluminal techniques. materials and methods: Sixty-nine patients underwent computed tomography colonography (CTC) after bowel cleansing. Forty-five had no polyps and 24 had at least one polyp >=6 mm. Patients underwent same-day colonoscopy with segmental unblinding. Three experienced abdominal radiologists evaluated the data using one of three primary interpretation techniques: (1) 2D; (2) bidirectional 3D; (3) panoramic 3D. Mixed model analysis of variance and logistic regression for correlated data were used to compare techniques with respect to time and sensitivity and specificity. Results: Mean evaluation times were 8.6, 14.6, and 12.1 min, for 2D, 3D, and panoramic, respectively. 2D was faster than either 3D technique (p < 0.0001), and the panoramic technique was faster than bidirectional 3D (p = 0.0139). The overall sensitivity of each technique per polyp and per patient was 68.4 and 76.7% for 2D, 78.9 and 93.3% for 3D; and 78.9 and 86.7% for panoramic 3D. Conclusion: 2D interpretation was the fastest overall, the panoramic technique was significantly faster than the bidirectional with similar sensitivity and specificity. The sensitivity for a single reader was significantly lower using the 2D technique. Each reader should select the technique with which they are most successful.

  7. A comparison calculation of FLUENT and MARS 3-D for the velocity field in the downcomer annulus

    International Nuclear Information System (INIS)

    A comparison calculation of velocity fields for the downcomer annulus of APR1400 has been performed for a conformation of the velocity similarity between MARS 3-D and FLUENT 3-D code results. The air discharge condition is considered to simulate a steam discharge condition during the late reflood phase of the APR1400 LBLOCA for the FLUENT simulation, while the steam discharge condition is considered for the MARS 3-D calculation. The downcomer model is a 1/4.93 length scaled model by the modified linear scaling law. To study the scale effects on the flow distribution, the velocity was varied from 1/1 to 1/4.29 for the model that is scaled down by the modified linear scaling law. It is found that the MARS and FLUENT results have the similar flow fields

  8. Online 3D terrain visualisation using Unity 3D game engine: A comparison of different contour intervals terrain data draped with UAV images

    Science.gov (United States)

    Hafiz Mahayudin, Mohd; Che Mat, Ruzinoor

    2016-06-01

    The main objective of this paper is to discuss on the effectiveness of visualising terrain draped with Unmanned Aerial Vehicle (UAV) images generated from different contour intervals using Unity 3D game engine in online environment. The study area that was tested in this project was oil palm plantation at Sintok, Kedah. The contour data used for this study are divided into three different intervals which are 1m, 3m and 5m. ArcGIS software were used to clip the contour data and also UAV images data to be similar size for the overlaying process. The Unity 3D game engine was used as the main platform for developing the system due to its capabilities which can be launch in different platform. The clipped contour data and UAV images data were process and exported into the web format using Unity 3D. Then process continue by publishing it into the web server for comparing the effectiveness of different 3D terrain data (contour data) draped with UAV images. The effectiveness is compared based on the data size, loading time (office and out-of-office hours), response time, visualisation quality, and frame per second (fps). The results were suggest which contour interval is better for developing an effective online 3D terrain visualisation draped with UAV images using Unity 3D game engine. It therefore benefits decision maker and planner related to this field decide on which contour is applicable for their task.

  9. 3D imaging with an isocentric mobile C-arm. Comparison of image quality with spiral CT

    Energy Technology Data Exchange (ETDEWEB)

    Kotsianos, Dorothea; Wirth, Stefan; Fischer, Tanja; Euler, Ekkehard; Rock, Clemens; Linsenmaier, Ulrich; Pfeifer, Klaus Juergen; Reiser, Maximilian [Departments of Radiology and Surgery, Klinikum der Universitaet Muenchen, Innenstadt, Nussbaumstrasse 20, 80336, Munchen (Germany)

    2004-09-01

    The purpose of this study was to evaluate the image quality of the new 3D imaging system (ISO-C-3D) for osteosyntheses of tibial condylar fractures in comparison with spiral CT (CT). Sixteen human cadaveric knees were examined with a C-arm 3D imaging system and spiral computed tomography. Various screws and plates of steel and titanium were used for osteosynthesis in these specimens. Image quality and clinical value of multiplanar (MP) reformatting of both methods were analyzed. In addition, five patients with tibial condylar fractures were examined for diagnosis and intra-operative control. The image quality of the C-arm 3D imaging system in the cadaveric study was rated as significantly worse than that of spiral CT with and without prostheses. After implantation of prostheses an increased incidence of artifacts was observed, but the diagnostic accuracy was not affected. Titanium implants caused the smallest number of artifacts. The image quality of ISO-C is inferior to CT, and metal artifacts were more prominent, but the clinical value was equal. ISO-C-3D can be useful in planning operative reconstructions and can verify the reconstruction of articular surfaces and the position of implants with diagnostic image quality. (orig.)

  10. A Comparison of Iterative 2D-3D Pose Estimation Methods for Real-Time Applications

    DEFF Research Database (Denmark)

    Grest, Daniel; Krüger, Volker; Petersen, Thomas

    2009-01-01

    This work compares iterative 2D-3D Pose Estimation methods for use in real-time applications. The compared methods are available for public as C++ code. One method is part of the openCV library, namely POSIT. Because POSIT is not applicable for planar 3Dpoint congurations, we include the planar...

  11. Evaluation of Gastric Volumes: Comparison of 3-D Ultrasound and Magnetic Resonance Imaging.

    Science.gov (United States)

    Buisman, Wijnand J; Mauritz, Femke A; Westerhuis, Wouter E; Gilja, Odd Helge; van der Zee, David C; van Herwaarden-Lindeboom, Maud Y A

    2016-07-01

    To investigate gastric accommodation, accurate measurements of gastric volumes are necessary. An excellent technique to measure gastric volumes is dynamic magnetic resonance imaging (MRI). Unfortunately, dynamic MRI is expensive and not always available. A new 3-D ultrasound (US) method using a matrix transducer was developed to measure gastric volumes. In this prospective study, 14 healthy volunteers underwent a dynamic MRI and a 3-D US. Gastric volumes were calculated with intra-gastric liquid content and total gastric volume. Mean postprandial liquid gastric content was 397 ± 96.5 mL. Mean volume difference was 1.0 mL with limits of agreement of -8.9 to 10.9 mL. When gastric air was taken into account, mean total gastric volume was 540 ± 115.4 mL SD. Mean volume difference was 2.3 mL with limits of agreement of -21.1 to 26.4 mL. The matrix 3-D US showed excellent agreement with dynamic MRI. Therefore matrix 3-D US is a reliable alternative to measure gastric volumes. PMID:27067418

  12. Comparison: RELAP5-3D systems analysis code and fluent CFD code momentum equation formulations

    International Nuclear Information System (INIS)

    Recently the Idaho National Engineering and Environmental Laboratory (INEEL), in conjunction with Fluent Corporation, have developed a new analysis tool by coupling the Fluent computational fluid dynamics (CFD) code to the RELAP5-3D advanced thermal-hydraulic analysis code. This tool enables researchers to perform detailed, two- or three-dimensional analyses using Fluent's CFD capability while the boundary conditions required by the Fluent calculation are provided by the balance-of-system model created using RELAP5-3D. Fluent and RELAP5-3D have strengths that complement one another. CFD codes, such as Fluent, are commonly used to analyze the flow behavior in regions of a system where complex flow patterns are expected or present. On the other hand, RELAP5-3D was developed to analyze the behavior of two-phase systems that could be modeled in one-dimension. Empirical relationships were used where first-principle physics were not well developed. Both Fluent and RELAP5-3D are exemplary in their areas of specialization. The differences between Fluent and RELAP5 fundamentally stem from their field equations. This study focuses on the differences between the momentum equation representations in the two codes (the continuity equation formulations are equivalent for single phase flow). First the differences between the momentum equations are summarized. Next the effect of the differences in the momentum equations are examined by comparing the results obtained using both codes to study the same problem, i.e., fully-developed turbulent pipe flow. Finally, conclusions regarding the significance of the differences are given. (author)

  13. Domestic comparison of radiation treatment techniques for breast cancer: 3D-CRT, IMRT and VMAT

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Bo Ram; Yoon, Myong Geun [Dept. of Bio-convergence Engineering, College of Health Science, Korea University, Seoul (Korea, Republic of); Lee, Sun Young [Dept. of Radiation Oncology, Yusung Sun Medical Center, Daejeon (Korea, Republic of)

    2013-09-15

    The purpose of this study is to compare method in the treatment of breast cancer using dose index. And, it is to find the optimized treatment technique to the patient. The phantom filled with tissue-equivalent material were used simulation and treatment as techniques of 3D-CRT, IMRT, VMAT was planned using Eclipse v10. By using HI(homogeneity index), CI(Conformity index), OE (Organ equivalent dose), EAR(Excess Absolute Risk), were assessed for each treatment plans. HI and CI of 3D-CRT, IMRT, VMAT were calculated 16.89, 11.21, 9.55 and 0.59, 0.61, 0.83. The organ average doses of Lt lung, Rt lung, liver, heart, esophagus, cord, Lt breast, trachea and stomach were 0.01 ∼ 2.02 Gy, 0.36 ∼ 5.01 Gy, 0.25 ∼ 2.49 Gy, 0.14 ∼ 6.92 Gy, 0.03 ∼ 2.02 Gy, 0.01 ∼ 1.06 Gy, 0.25 ∼ 6.08 Gy, 0.08 ∼ 0.59 Gy, 0.01 ∼ 1.34 Gy, respectively. The OED, EAR of the IMRT and VMAT show higher than 3D-CRT. As the result of this study, we could confirm being higher dose index(HI, CI) in IMRT and VMAT than 3D-CRT, but doses of around normal organs was higher IMRT, VMAT than 3D-CRT.

  14. Detection of tibial condylar fractures using 3D imaging with a mobile image amplifier (Siemens ISO-C-3D): Comparison with plain films and spiral CT

    International Nuclear Information System (INIS)

    Purpose: To analyze a prototype mobile C-arm 3D image amplifier in the detection and classification of experimental tibial condylar fractures with multiplanar reconstructions (MPR). Method: Human knee specimens (n=22) with tibial condylar fractures were examined with a prototype C-arm (ISO-C-3D, Siemens AG), plain films (CR) and spiral CT (CT). The motorized C-arm provides fluoroscopic images during a 190 orbital rotation computing a 119 mm data cube. From these 3D data sets MP reconstructions were obtained. All images were evaluated by four independent readers for the detection and assessment of fracture lines. All fractures were classified according to the Mueller AO classification. To confirm the results, the specimens were finally surgically dissected. Results: 97% of the tibial condylar fractures were easily seen and correctly classified according to the Mueller AO classification on MP reconstruction of the ISO-C-3D. There is no significant difference between ISO-C and CT in detection and correct classification of fractures, but ISO-CD-3D is significant by better than CR. (orig.)

  15. SU-E-T-472: A Multi-Dimensional Measurements Comparison to Analyze a 3D Patient Specific QA Tool

    International Nuclear Information System (INIS)

    Purpose: To quantitatively evaluate a 3D patient specific QA tool using 2D film and 3D Presage dosimetry. Methods: A brain IMRT case was delivered to Delta4, EBT2 film and Presage plastic dosimeter. The film was inserted in the solid water slabs at 7.5cm depth for measurement. The Presage dosimeter was inserted into a head phantom for 3D dose measurement. Delta4's Anatomy software was used to calculate the corresponding dose to the film in solid water slabs and to Presage in the head phantom. The results from Anatomy were compared to both calculated results from Eclipse and measured dose from film and Presage to evaluate its accuracy. Using RIT software, we compared the “Anatomy” dose to the EBT2 film measurement and the film measurement to ECLIPSE calculation. For 3D analysis, DICOM file of “Anatomy” was extracted and imported to CERR software, which was used to compare the Presage dose to both “Anatomy” calculation and ECLIPSE calculation. Gamma criteria of 3% - 3mm and 5% - 5mm was used for comparison. Results: Gamma passing rates of film vs “Anatomy”, “Anatomy” vs ECLIPSE and film vs ECLIPSE were 82.8%, 70.9% and 87.6% respectively when 3% - 3mm criteria is used. When the criteria is changed to 5% - 5mm, the passing rates became 87.8%, 76.3% and 90.8% respectively. For 3D analysis, Anatomy vs ECLIPSE showed gamma passing rate of 86.4% and 93.3% for 3% - 3mm and 5% - 5mm respectively. The rate is 77.0% for Presage vs ECLIPSE analysis. The Anatomy vs ECLIPSE were absolute dose comparison. However, film and Presage analysis were relative comparison Conclusion: The results show higher passing rate in 3D than 2D in “Anatomy” software. This could be due to the higher degrees of freedom in 3D than in 2D for gamma analysis

  16. Frontonasal dysmorphology in bipolar disorder by 3D laser surface imaging and geometric morphometrics: Comparisons with schizophrenia

    OpenAIRE

    Hennessy, Robin J.; Baldwin, Patrizia A; Browne, David J.; Kinsella, Anthony; Waddington, John L.

    2010-01-01

    Any developmental relationship between bipolar disorder and schizophrenia engenders continuing debate. As the brain and face emerge in embryological intimacy, brain dysmorphogenesis is accompanied by facial dysmorphogenesis. 3D laser surface imaging was used to capture the facial surface of 13 male and 14 female patients with bipolar disorder in comparison with 61 male and 75 female control subjects and with 37 male and 32 female patients with schizophrenia. Surface images were analysed using...

  17. Epileptogenic lesion quantification in MRI using contralateral 3D texture comparisons

    OpenAIRE

    Jiménez del Toro, Oscar Alfonso; Foncubierta-Rodríguez, Antonio; Vargas Gomez, Maria-Isabel; Müller, Henning; Depeursinge, Adrien

    2014-01-01

    Epilepsy is a disorder of the brain that can lead to acute crisis and if possible an intervention can help patients. The exact localization of epileptogenic lesions influences the outcome of epilepsy surgery. Magnetic resonance (MR) imaging is clinically used for lesion detection and treatment planning, mainly through simple visual analysis. However, visual inspection in MR imaging can be highly subjective and subtle 3D structural abnormalities can be missclassified or not resected completely...

  18. 3-D NUMERICAL STUDY AND COMPARISON OF ECCENTRIC AND CONCENTRIC ANNULAR-FINNED TUBE HEAT EXCHANGERS

    OpenAIRE

    FAROUK TAHROUR; ABDELMOUMENE HAKIM BENMACHICHE; MOUNIR AKSAS; CHERIF BOUGRIOU

    2015-01-01

    The use of 3-D computational fluid dynamics (CFD) is proposed to simulate the conjugate conduction-convection of heat transfer problems in eccentric annularfinned tube heat exchangers. The numerical simulation results allow us to evaluate the heat transfer coefficient over fin surfaces, the fin efficiency and the pressure drop. The aim of the present paper is to determine the optimum tube position in the circular fin that maximizes heat dissipation and minimizes pressure drop. In addition, th...

  19. A highly heterogeneous 3D PWR core benchmark: deterministic and Monte Carlo method comparison

    Science.gov (United States)

    Jaboulay, J.-C.; Damian, F.; Douce, S.; Lopez, F.; Guenaut, C.; Aggery, A.; Poinot-Salanon, C.

    2014-06-01

    Physical analyses of the LWR potential performances with regards to the fuel utilization require an important part of the work dedicated to the validation of the deterministic models used for theses analyses. Advances in both codes and computer technology give the opportunity to perform the validation of these models on complex 3D core configurations closed to the physical situations encountered (both steady-state and transient configurations). In this paper, we used the Monte Carlo Transport code TRIPOLI-4®; to describe a whole 3D large-scale and highly-heterogeneous LWR core. The aim of this study is to validate the deterministic CRONOS2 code to Monte Carlo code TRIPOLI-4®; in a relevant PWR core configuration. As a consequence, a 3D pin by pin model with a consistent number of volumes (4.3 millions) and media (around 23,000) is established to precisely characterize the core at equilibrium cycle, namely using a refined burn-up and moderator density maps. The configuration selected for this analysis is a very heterogeneous PWR high conversion core with fissile (MOX fuel) and fertile zones (depleted uranium). Furthermore, a tight pitch lattice is selcted (to increase conversion of 238U in 239Pu) that leads to harder neutron spectrum compared to standard PWR assembly. In these conditions two main subjects will be discussed: the Monte Carlo variance calculation and the assessment of the diffusion operator with two energy groups for the core calculation.

  20. Dosimetric and radiobiologic comparison of 3D conformal versus intensity modulated planning techniques for prostate bed radiotherapy.

    Science.gov (United States)

    Koontz, Bridget F; Das, Shiva; Temple, Kathy; Bynum, Sigrun; Catalano, Suzanne; Koontz, Jason I; Montana, Gustavo S; Oleson, James R

    2009-01-01

    Adjuvant radiotherapy for locally advanced prostate cancer improves biochemical and clinical disease-free survival. While comparisons in intact prostate cancer show a benefit for intensity modulated radiation therapy (IMRT) over 3D conformal planning, this has not been studied for post-prostatectomy radiotherapy (RT). This study compares normal tissue and target dosimetry and radiobiological modeling of IMRT vs. 3D conformal planning in the postoperative setting. 3D conformal plans were designed for 15 patients who had been treated with IMRT planning for salvage post-prostatectomy RT. The same computed tomography (CT) and target/normal structure contours, as well as prescription dose, was used for both IMRT and 3D plans. Normal tissue complication probabilities (NTCPs) were calculated based on the dose given to the bladder and rectum by both plans. Dose-volume histogram and NTCP data were compared by paired t-test. Bladder and rectal sparing were improved with IMRT planning compared to 3D conformal planning. The volume of the bladder receiving at least 75% (V75) and 50% (V50) of the dose was significantly reduced by 28% and 17%, respectively (p = 0.002 and 0.037). Rectal dose was similarly reduced, V75 by 33% and V50 by 17% (p = 0.001 and 0.004). While there was no difference in the volume of rectum receiving at least 65 Gy (V65), IMRT planning significant reduced the volume receiving 40 Gy or more (V40, p = 0.009). Bladder V40 and V65 were not significantly different between planning modalities. Despite these dosimetric differences, there was no significant difference in the NTCP for either bladder or rectal injury. IMRT planning reduces the volume of bladder and rectum receiving high doses during post-prostatectomy RT. Because of relatively low doses given to the bladder and rectum, there was no statistically significant improvement in NTCP between the 3D conformal and IMRT plans.

  1. Generation and Comparison of Tls and SFM Based 3d Models of Solid Shapes in Hydromechanic Research

    Science.gov (United States)

    Zhang, R.; Schneider, D.; Strauß, B.

    2016-06-01

    The aim of a current study at the Institute of Hydraulic Engineering and Technical Hydromechanics at TU Dresden is to develop a new injection method for quick and economic sealing of dikes or dike bodies, based on a new synthetic material. To validate the technique, an artificial part of a sand dike was built in an experimental hall. The synthetic material was injected, which afterwards spreads in the inside of the dike. After the material was fully solidified, the surrounding sand was removed with an excavator. In this paper, two methods, which applied terrestrial laser scanning (TLS) and structure from motion (SfM) respectively, for the acquisition of a 3D point cloud of the remaining shapes are described and compared. Combining with advanced software packages, a triangulated 3D model was generated and subsequently the volume of vertical sections of the shape were calculated. As the calculation of the volume revealed differences between the TLS and the SfM 3D model, a thorough qualitative comparison of the two models will be presented as well as a detailed accuracy assessment. The main influence of the accuracy is caused by generalisation in case of gaps due to occlusions in the 3D point cloud. Therefore, improvements for the data acquisition with TLS and SfM for such kind of objects are suggested in the paper.

  2. GENERATION AND COMPARISON OF TLS AND SFM BASED 3D MODELS OF SOLID SHAPES IN HYDROMECHANIC RESEARCH

    Directory of Open Access Journals (Sweden)

    R. Zhang

    2016-06-01

    Full Text Available The aim of a current study at the Institute of Hydraulic Engineering and Technical Hydromechanics at TU Dresden is to develop a new injection method for quick and economic sealing of dikes or dike bodies, based on a new synthetic material. To validate the technique, an artificial part of a sand dike was built in an experimental hall. The synthetic material was injected, which afterwards spreads in the inside of the dike. After the material was fully solidified, the surrounding sand was removed with an excavator. In this paper, two methods, which applied terrestrial laser scanning (TLS and structure from motion (SfM respectively, for the acquisition of a 3D point cloud of the remaining shapes are described and compared. Combining with advanced software packages, a triangulated 3D model was generated and subsequently the volume of vertical sections of the shape were calculated. As the calculation of the volume revealed differences between the TLS and the SfM 3D model, a thorough qualitative comparison of the two models will be presented as well as a detailed accuracy assessment. The main influence of the accuracy is caused by generalisation in case of gaps due to occlusions in the 3D point cloud. Therefore, improvements for the data acquisition with TLS and SfM for such kind of objects are suggested in the paper.

  3. 3D Mandibular Superimposition: Comparison of Regions of Reference for Voxel-Based Registration

    Science.gov (United States)

    Ruellas, Antonio Carlos de Oliveira; Yatabe, Marilia Sayako; Souki, Bernardo Quiroga; Benavides, Erika; Nguyen, Tung; Luiz, Ronir Raggio; Franchi, Lorenzo; Cevidanes, Lucia Helena Soares

    2016-01-01

    Introduction The aim was to evaluate three regions of reference (Björk, Modified Björk and mandibular Body) for mandibular registration testing them in a patients’ CBCT sample. Methods Mandibular 3D volumetric label maps were built from CBCTs taken before (T1) and after treatment (T2) in a sample of 16 growing subjects and labeled with eight landmarks. Registrations of T1 and T2 images relative to the different regions of reference were performed, and 3D surface models were generated. Seven mandibular dimensions were measured separately for each time-point (T1 and T2) in relation to a stable reference structure (lingual cortical of symphysis), and the T2-T1 differences were calculated. These differences were compared to differences measured between the superimposed T2 (generated from different regions of reference: Björk, Modified Björk and Mandibular Body) over T1 surface models. ICC and the Bland-Altman method tested the agreement of the changes obtained by nonsuperimposition measurements from the patients’ sample, and changes between the overlapped surfaces after registration using the different regions of reference. Results The Björk region of reference (or mask) did work properly only in 2 of 16 patients. Evaluating the two other masks (Modified Björk and Mandibular body) on patients’ scans registration, the concordance and agreement of the changes obtained from superimpositions (registered T2 over T1) compared to results obtained from non superimposed T1 and T2 separately, indicated that Mandibular Body mask displayed more consistent results. Conclusions The mandibular body mask (mandible without teeth, alveolar bone, rami and condyles) is a reliable reference for 3D regional registration. PMID:27336366

  4. Comparison of User Performance with Interactive and Static 3d Visualization - Pilot Study

    Science.gov (United States)

    Herman, L.; Stachoň, Z.

    2016-06-01

    Interactive 3D visualizations of spatial data are currently available and popular through various applications such as Google Earth, ArcScene, etc. Several scientific studies have focused on user performance with 3D visualization, but static perspective views are used as stimuli in most of the studies. The main objective of this paper is to try to identify potential differences in user performance with static perspective views and interactive visualizations. This research is an exploratory study. An experiment was designed as a between-subject study and a customized testing tool based on open web technologies was used for the experiment. The testing set consists of an initial questionnaire, a training task and four experimental tasks. Selection of the highest point and determination of visibility from the top of a mountain were used as the experimental tasks. Speed and accuracy of each task performance of participants were recorded. The movement and actions in the virtual environment were also recorded within the interactive variant. The results show that participants deal with the tasks faster when using static visualization. The average error rate was also higher in the static variant. The findings from this pilot study will be used for further testing, especially for formulating of hypotheses and designing of subsequent experiments.

  5. A Comparison of Splitting Techniques for 3D Complex Padé Fourier Finite Difference Migration

    Directory of Open Access Journals (Sweden)

    Jessé C. Costa

    2011-01-01

    Full Text Available Three-dimensional wave-equation migration techniques are still quite expensive because of the huge matrices that need to be inverted. Several techniques have been proposed to reduce this cost by splitting the full 3D problem into a sequence of 2D problems. We compare the performance of splitting techniques for stable 3D Fourier finite-difference (FFD migration techniques in terms of image quality and computational cost. The FFD methods are complex Padé FFD and FFD plus interpolation, and the compared splitting techniques are two- and four-way splitting as well as alternating four-way splitting, that is, splitting into the coordinate directions at one depth and the diagonal directions at the next depth level. From numerical examples in homogeneous and inhomogeneous media, we conclude that, though theoretically less accurate, alternate four-way splitting yields results of comparable quality as full four-way splitting at the cost of two-way splitting.

  6. Bronchial morphometry in smokers: comparison with healthy subjects by using 3D CT

    Energy Technology Data Exchange (ETDEWEB)

    Montaudon, Michel [Unite d' Imagerie Thoracique, CHU de Bordeaux, Pessac (France); Universite Bordeaux 2, Laboratoire de Physiologie Cellulaire Respiratoire, Bordeaux (France); INSERM, Bordeaux (France); Hopital Cardiologique, Unite d' Imagerie Thoracique, Pessac (France); Berger, Patrick; Marthan, Roger [Universite Bordeaux 2, Laboratoire de Physiologie Cellulaire Respiratoire, Bordeaux (France); INSERM, Bordeaux (France); Service d' Exploration Fonctionnelle Respiratoire, CHU de Bordeaux, Pessac (France); Lederlin, Mathieu [Unite d' Imagerie Thoracique, CHU de Bordeaux, Pessac (France); Tunon-de-Lara, Jose Manuel [Universite Bordeaux 2, Laboratoire de Physiologie Cellulaire Respiratoire, Bordeaux (France); INSERM, Bordeaux (France); Service des Maladies Respiratoires, CHU de Bordeaux, Pessac (France); Laurent, Francois [Unite d' Imagerie Thoracique, CHU de Bordeaux, Pessac (France); Universite Bordeaux 2, Laboratoire de Physiologie Cellulaire Respiratoire, Bordeaux (France); INSERM, Bordeaux (France)

    2009-06-15

    The assessment of airway dimensions in patients with airway disease by using computed tomography (CT) has been limited by the obliquity of bronchi, the ability to identify the bronchial generation, and the limited number of bronchial measurements. The aims of the present study were (i) to analyze cross-sectional bronchial dimensions after automatic orthogonal reconstruction of all visible bronchi on CT images, and (ii) to compare bronchial morphometry between smokers and nonsmokers. CT and pulmonary function tests were performed in 18 males separated into two groups: 9 nonsmokers and 9 smokers. Bronchial wall area (WA) and lumen area (LA) were assessed using dedicated 3D software able to provide accurate cross-sectional measurements of all visible bronchi on CT. WA/LA and WA/(WA+LA) ratios were computed and all parameters were compared between both groups. Smokers demonstrated greater WA, smaller LA, and consequently greater LA/WA and LA/(WA+LA) ratios than nonsmokers. These differences occurred downward starting at the fourth bronchial generation. 3D quantitative CT method is able to demonstrate significant changes in bronchial morphometry related to tobacco consumption. (orig.)

  7. Comparison of parabolic filtration methods for 3D filtered back projection in pulsed EPR imaging.

    Science.gov (United States)

    Qiao, Zhiwei; Redler, Gage; Epel, Boris; Halpern, Howard J

    2014-11-01

    Pulse electron paramagnetic resonance imaging (Pulse EPRI) is a robust method for noninvasively measuring local oxygen concentrations in vivo. For 3D tomographic EPRI, the most commonly used reconstruction algorithm is filtered back projection (FBP), in which the parabolic filtration process strongly influences image quality. In this work, we designed and compared 7 parabolic filtration methods to reconstruct both simulated and real phantoms. To evaluate these methods, we designed 3 error criteria and 1 spatial resolution criterion. It was determined that the 2 point derivative filtration method and the two-ramp-filter method have unavoidable negative effects resulting in diminished spatial resolution and increased artifacts respectively. For the noiseless phantom the rectangular-window parabolic filtration method and sinc-window parabolic filtration method were found to be optimal, providing high spatial resolution and small errors. In the presence of noise, the 3 point derivative method and Hamming-window parabolic filtration method resulted in the best compromise between low image noise and high spatial resolution. The 3 point derivative method is faster than Hamming-window parabolic filtration method, so we conclude that the 3 point derivative method is optimal for 3D FBP.

  8. Comprehensive comparison of large-scale tissue expression datasets

    Directory of Open Access Journals (Sweden)

    Alberto Santos

    2015-06-01

    Full Text Available For tissues to carry out their functions, they rely on the right proteins to be present. Several high-throughput technologies have been used to map out which proteins are expressed in which tissues; however, the data have not previously been systematically compared and integrated. We present a comprehensive evaluation of tissue expression data from a variety of experimental techniques and show that these agree surprisingly well with each other and with results from literature curation and text mining. We further found that most datasets support the assumed but not demonstrated distinction between tissue-specific and ubiquitous expression. By developing comparable confidence scores for all types of evidence, we show that it is possible to improve both quality and coverage by combining the datasets. To facilitate use and visualization of our work, we have developed the TISSUES resource (http://tissues.jensenlab.org, which makes all the scored and integrated data available through a single user-friendly web interface.

  9. Comparison of LDA and SPRT on Clinical Dataset Classifications.

    Science.gov (United States)

    Lee, Chih; Nkounkou, Brittany; Huang, Chun-Hsi

    2011-04-19

    In this work, we investigate the well-known classification algorithm LDA as well as its close relative SPRT. SPRT affords many theoretical advantages over LDA. It allows specification of desired classification error rates α and β and is expected to be faster in predicting the class label of a new instance. However, SPRT is not as widely used as LDA in the pattern recognition and machine learning community. For this reason, we investigate LDA, SPRT and a modified SPRT (MSPRT) empirically using clinical datasets from Parkinson's disease, colon cancer, and breast cancer. We assume the same normality assumption as LDA and propose variants of the two SPRT algorithms based on the order in which the components of an instance are sampled. Leave-one-out cross-validation is used to assess and compare the performance of the methods. The results indicate that two variants, SPRT-ordered and MSPRT-ordered, are superior to LDA in terms of prediction accuracy. Moreover, on average SPRT-ordered and MSPRT-ordered examine less components than LDA before arriving at a decision. These advantages imply that SPRT-ordered and MSPRT-ordered are the preferred algorithms over LDA when the normality assumption can be justified for a dataset.

  10. Comparison of Supernovae Datasets Constraints on Dark Energy

    Institute of Scientific and Technical Information of China (English)

    ZHANG Cheng-Wu; XU Li-Xin; CHANG Bao-Rong; LIU Hong-Ya

    2007-01-01

    Cosmological measurements suggest that our universe contains a dark energy component. In order to study the dark energy evolution, we constrain a parameterized dark energy equation of state ω(z) = ω0+ω1(z/1+z) using the recent observational datasets: 157 Gold type la supernovae and the newly released 182 Gold type la supernovae by the maximum likelihood method. It is found that the best fit ω(z) crosses -1 in the past and the present best fit value of ω(0)<-1 obtained from 157 Gold-type la supernovae. The crossing of -1 is not realized and ω0=-1 is not ruled out in 1σ confidence level for the 182 Gold-type la supernovae. It is also found that the range of parameter ω0 is wide even in 1σ confidence level and the best fit ω(z) is sensitive to the prior of Ωm.

  11. Comparison between the 3D numerical simulation and experiment of the bubble near different boundaries

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Based on the potential flow theory, the vortex ring is introduced to simulate the toroidal bubble, and the boundary element method is applied to simulate the evo- lution of the bubble. Elastic-plasticity of structure being taken into account, the interaction between the bubble and the elastic-plastic structure is computed by combining the boundary element method (BEM) and the finite element method (FEM), and a corresponding 3D computing program is developed. This program is used to simulate the three-dimensional bubble dynamics in free field, near wall and near the elastic-plastic structure, and the numerical results are compared with the existing experimental results. The error is within 10%. The effects of different boundaries upon the bubble dynamics are presented by studying the bubble dy- namics near different boundaries.

  12. Comparison between the 3D numerical simulation and experiment of the bubble near different boundaries

    Institute of Scientific and Technical Information of China (English)

    ZHANG AMan; YAO XiongLiang; LI Jia; GUO Jun

    2008-01-01

    Based on the potential flow theory,the vortex ring is introduced to simulate the toroidal bubble,and the boundary element method is applied to simulate the evo-lution of the bubble.Elastic-plasticity of structure being taken into account,the interaction between the bubble and the elastic-plastic structure is computed by combining the boundary element method (BEM) and the finite element method (FEM),and a corresponding 3D computing program is developed.This program is used to simulate the three-dimensional bubble dynamics in free field,near wall and near the elastic-plastic structure,and the numerical results are compared with the existing experimental results.The error is within 10%.The effects of different boundaries upon the bubble dynamics are presented by studying the bubble dy-namics near different boundaries.

  13. Comparison of 2D and 3D wavelet features for TLE lateralization

    Science.gov (United States)

    Jafari-Khouzani, Kourosh; Soltanian-Zadeh, Hamid; Elisevich, Kost; Patel, Suresh

    2004-04-01

    Intensity and volume features of the hippocampus from MR images of the brain are known to be useful in detecting the abnormality and consequently candidacy of the hippocampus for temporal lobe epilepsy surgery. However, currently, intracranial EEG exams are required to determine the abnormal hippocampus. These exams are lengthy, painful and costly. The aim of this study is to evaluate texture characteristics of the hippocampi from MR images to help physicians determine the candidate hippocampus for surgery. We studied the MR images of 20 epileptic patients. Intracranial EEG results as well as surgery outcome were used as gold standard. The hippocampi were manually segmented by an expert from T1-weighted MR images. Then the segmented regions were mapped on the corresponding FLAIR images for texture analysis. We calculate the average energy features from 2D wavelet transform of each slice of hippocampus as well as the energy features produced by 3D wavelet transform of the whole hippocampus volume. The 2D wavelet transform is calculated both from the original slices as well as from the slices perpendicular to the principal axis of the hippocampus. In order to calculate the 3D wavelet transform we first rotate each hippocampus to fit it in a rectangular prism and then fill the empty area by extrapolating the intensity values. We combine the resulting features with volume feature and compare their ability to distinguish between normal and abnormal hippocampi using linear classifier and fuzzy c-means clustering algorithm. Experimental results show that the texture features can correctly classify the hippocampi.

  14. Deriving 3d Point Clouds from Terrestrial Photographs - Comparison of Different Sensors and Software

    Science.gov (United States)

    Niederheiser, Robert; Mokroš, Martin; Lange, Julia; Petschko, Helene; Prasicek, Günther; Oude Elberink, Sander

    2016-06-01

    Terrestrial photogrammetry nowadays offers a reasonably cheap, intuitive and effective approach to 3D-modelling. However, the important choice, which sensor and which software to use is not straight forward and needs consideration as the choice will have effects on the resulting 3D point cloud and its derivatives. We compare five different sensors as well as four different state-of-the-art software packages for a single application, the modelling of a vegetated rock face. The five sensors represent different resolutions, sensor sizes and price segments of the cameras. The software packages used are: (1) Agisoft PhotoScan Pro (1.16), (2) Pix4D (2.0.89), (3) a combination of Visual SFM (V0.5.22) and SURE (1.2.0.286), and (4) MicMac (1.0). We took photos of a vegetated rock face from identical positions with all sensors. Then we compared the results of the different software packages regarding the ease of the workflow, visual appeal, similarity and quality of the point cloud. While PhotoScan and Pix4D offer the user-friendliest workflows, they are also "black-box" programmes giving only little insight into their processing. Unsatisfying results may only be changed by modifying settings within a module. The combined workflow of Visual SFM, SURE and CloudCompare is just as simple but requires more user interaction. MicMac turned out to be the most challenging software as it is less user-friendly. However, MicMac offers the most possibilities to influence the processing workflow. The resulting point-clouds of PhotoScan and MicMac are the most appealing.

  15. RAG-3D: a search tool for RNA 3D substructures.

    Science.gov (United States)

    Zahran, Mai; Sevim Bayrak, Cigdem; Elmetwaly, Shereef; Schlick, Tamar

    2015-10-30

    To address many challenges in RNA structure/function prediction, the characterization of RNA's modular architectural units is required. Using the RNA-As-Graphs (RAG) database, we have previously explored the existence of secondary structure (2D) submotifs within larger RNA structures. Here we present RAG-3D-a dataset of RNA tertiary (3D) structures and substructures plus a web-based search tool-designed to exploit graph representations of RNAs for the goal of searching for similar 3D structural fragments. The objects in RAG-3D consist of 3D structures translated into 3D graphs, cataloged based on the connectivity between their secondary structure elements. Each graph is additionally described in terms of its subgraph building blocks. The RAG-3D search tool then compares a query RNA 3D structure to those in the database to obtain structurally similar structures and substructures. This comparison reveals conserved 3D RNA features and thus may suggest functional connections. Though RNA search programs based on similarity in sequence, 2D, and/or 3D structural elements are available, our graph-based search tool may be advantageous for illuminating similarities that are not obvious; using motifs rather than sequence space also reduces search times considerably. Ultimately, such substructuring could be useful for RNA 3D structure prediction, structure/function inference and inverse folding. PMID:26304547

  16. 3D-Gd-DTPA MR angiography of cerebral blood vessels: A comparison with conventional 3D-MR subtraction angiography

    International Nuclear Information System (INIS)

    Subtraction angiography based on 3D fast imaging techniques using rephasing and dephasing gradient pulses is widely used, resulting in angiograms which closely correlate with DSA. Similar angiograms can be obtained with 3D-gradient echo techniques before and after the administration of Gadolinium (Gd)-DTPA (0.1-0.2 mmol/kg) followed by image subtraction. As Gd-DTPA does not penetrate the blood-brain barrier, brain imaging is not altering by the contrast agent. Both techniques were compared in patients wihout vascular disease, venous sinus thrombosis, AV malformation and aneurysm. With both techniques the cerebro-vascular system was imaged favoring the venous system because of the more constant flow velocity and the lack of ECG synchronization. Gd-DTPA offers the advantage of the higher signal-to-noise ratio and is hampered by background superposition due to Gd-DTPA enhancement in non brain tissue. With both techniques vessels down to 1 mm can be imaged. (orig.)

  17. Numerical Calculations of 3-D High-Lift Flows and Comparison with Experiment

    Science.gov (United States)

    Compton, William B, III

    2015-01-01

    Solutions were obtained with the Navier-Stokes CFD code TLNS3D to predict the flow about the NASA Trapezoidal Wing, a high-lift wing composed of three elements: the main-wing element, a deployed leading-edge slat, and a deployed trailing-edge flap. Turbulence was modeled by the Spalart-Allmaras one-equation turbulence model. One case with massive separation was repeated using Menter's two-equation SST (Menter's Shear Stress Transport) k-omega turbulence model in an attempt to improve the agreement with experiment. The investigation was conducted at a free stream Mach number of 0.2, and at angles of attack ranging from 10.004 degrees to 34.858 degrees. The Reynolds number based on the mean aerodynamic chord of the wing was 4.3 x 10 (sup 6). Compared to experiment, the numerical procedure predicted the surface pressures very well at angles of attack in the linear range of the lift. However, computed maximum lift was 5% low. Drag was mainly under predicted. The procedure correctly predicted several well-known trends and features of high-lift flows, such as off-body separation. The two turbulence models yielded significantly different solutions for the repeated case.

  18. Reliability of 3D laser-based anthropometry and comparison with classical anthropometry.

    Science.gov (United States)

    Kuehnapfel, Andreas; Ahnert, Peter; Loeffler, Markus; Broda, Anja; Scholz, Markus

    2016-01-01

    Anthropometric quantities are widely used in epidemiologic research as possible confounders, risk factors, or outcomes. 3D laser-based body scans (BS) allow evaluation of dozens of quantities in short time with minimal physical contact between observers and probands. The aim of this study was to compare BS with classical manual anthropometric (CA) assessments with respect to feasibility, reliability, and validity. We performed a study on 108 individuals with multiple measurements of BS and CA to estimate intra- and inter-rater reliabilities for both. We suggested BS equivalents of CA measurements and determined validity of BS considering CA the gold standard. Throughout the study, the overall concordance correlation coefficient (OCCC) was chosen as indicator of agreement. BS was slightly more time consuming but better accepted than CA. For CA, OCCCs for intra- and inter-rater reliability were greater than 0.8 for all nine quantities studied. For BS, 9 of 154 quantities showed reliabilities below 0.7. BS proxies for CA measurements showed good agreement (minimum OCCC > 0.77) after offset correction. Thigh length showed higher reliability in BS while upper arm length showed higher reliability in CA. Except for these issues, reliabilities of CA measurements and their BS equivalents were comparable. PMID:27225483

  19. Comparison of steroid substrates and inhibitors of P-glycoprotein by 3D-QSAR analysis

    Science.gov (United States)

    Li, Yan; Wang, Yong-Hua; Yang, Ling; Zhang, Shu-Wei; Liu, Chang-Hou; Yang, Sheng-Li

    2005-01-01

    Steroid derivatives show a complex interaction with P-glycoprotein (Pgp). To determine the essential structural requirements of a series of structurally related and functionally diverse steroids for Pgp-mediated transport or inhibition, a three-dimensional quantitative structure activity relationship study was performed by comparative similarity index analysis modeling. Twelve models have been explored to well correlate the physiochemical features with their biological functions with Pgp on basis of substrate and inhibitor datasets, in which the best predictive model for substrate gave cross-validated q2=0.720, non-cross-validated r2=0.998, standard error of estimate SEE=0.012, F=257.955, and the best predictive model for inhibitor gave q2=0.536, r2=0.950, SEE=1.761 and F=45.800. The predictive ability of all models was validated by a set of compounds that were not included in the training set. The physiochemical similarities and differences of steroids as Pgp substrate and inhibitor, respectively, were analyzed to be helpful in developing new steroid-like compounds.

  20. Comparison of Phase-Based 3D Near-Field Source Localization Techniques for UHF RFID

    Directory of Open Access Journals (Sweden)

    Andreas Parr

    2016-06-01

    Full Text Available In this paper, we present multiple techniques for phase-based narrowband backscatter tag localization in three-dimensional space with planar antenna arrays or synthetic apertures. Beamformer and MUSIC localization algorithms, known from near-field source localization and direction-of-arrival estimation, are applied to the 3D backscatter scenario and their performance in terms of localization accuracy is evaluated. We discuss the impact of different transceiver modes known from the literature, which evaluate different send and receive antenna path combinations for a single localization, as in multiple input multiple output (MIMO systems. Furthermore, we propose a new Singledimensional-MIMO (S-MIMO transceiver mode, which is especially suited for use with mobile robot systems. Monte-Carlo simulations based on a realistic multipath error model ensure spatial correlation of the simulated signals, and serve to critically appraise the accuracies of the different localization approaches. A synthetic uniform rectangular array created by a robotic arm is used to evaluate selected localization techniques. We use an Ultra High Frequency (UHF Radiofrequency Identification (RFID setup to compare measurements with the theory and simulation. The results show how a mean localization accuracy of less than 30 cm can be reached in an indoor environment. Further simulations demonstrate how the distance between aperture and tag affects the localization accuracy and how the size and grid spacing of the rectangular array need to be adapted to improve the localization accuracy down to orders of magnitude in the centimeter range, and to maximize array efficiency in terms of localization accuracy per number of elements.

  1. Origin of extracted negative ions by 3D PIC-MCC modeling. Surface vs Volume comparison

    International Nuclear Information System (INIS)

    The development of a high performance negative ion (NI) source constitutes a crucial step in the construction of Neutral Beam Injector (NBI) of the future fusion reactor ITER. NI source should deliver 40 A of H-(or D-), which is a technical and scientific challenge, and requires a deeper understanding of the underlying physics of the source and its magnetic filter. The present knowledge of the ion extraction mechanism from the negative ion source is limited and concerns magnetized plasma sheaths used to avoid electrons being co-extracted from the plasma together with the NI. Moreover, due to the asymmetry induced by the ITER crossed magnetic configuration used to filter the electrons, any realistic study of this problem must consider the three spatial dimensions. To address this problem, a 3D Particles-in-Cell electrostatic collisional code was developed, specifically designed for this system. Binary collisions between the particles are introduced using Monte Carlo Collision scheme. The complex orthogonal magnetic field that is applied to deflect electrons is also taken into account. This code, called ONIX (Orsay Negative Ion eXtraction), was used to investigate the plasma properties and the transport of the charged particles close to a typical extraction aperture [1]. This contribution focuses on the limits for the extracted NI current from both, plasma volume and aperture wall. Results of production, destruction, and transport of H- in the extraction region are presented. The extraction efficiency of H- from the volume is compared to the one of H- coming from the wall.

  2. Comparison of Phase-Based 3D Near-Field Source Localization Techniques for UHF RFID

    Science.gov (United States)

    Parr, Andreas; Miesen, Robert; Vossiek, Martin

    2016-01-01

    In this paper, we present multiple techniques for phase-based narrowband backscatter tag localization in three-dimensional space with planar antenna arrays or synthetic apertures. Beamformer and MUSIC localization algorithms, known from near-field source localization and direction-of-arrival estimation, are applied to the 3D backscatter scenario and their performance in terms of localization accuracy is evaluated. We discuss the impact of different transceiver modes known from the literature, which evaluate different send and receive antenna path combinations for a single localization, as in multiple input multiple output (MIMO) systems. Furthermore, we propose a new Singledimensional-MIMO (S-MIMO) transceiver mode, which is especially suited for use with mobile robot systems. Monte-Carlo simulations based on a realistic multipath error model ensure spatial correlation of the simulated signals, and serve to critically appraise the accuracies of the different localization approaches. A synthetic uniform rectangular array created by a robotic arm is used to evaluate selected localization techniques. We use an Ultra High Frequency (UHF) Radiofrequency Identification (RFID) setup to compare measurements with the theory and simulation. The results show how a mean localization accuracy of less than 30 cm can be reached in an indoor environment. Further simulations demonstrate how the distance between aperture and tag affects the localization accuracy and how the size and grid spacing of the rectangular array need to be adapted to improve the localization accuracy down to orders of magnitude in the centimeter range, and to maximize array efficiency in terms of localization accuracy per number of elements. PMID:27347976

  3. Comparison of Phase-Based 3D Near-Field Source Localization Techniques for UHF RFID.

    Science.gov (United States)

    Parr, Andreas; Miesen, Robert; Vossiek, Martin

    2016-01-01

    In this paper, we present multiple techniques for phase-based narrowband backscatter tag localization in three-dimensional space with planar antenna arrays or synthetic apertures. Beamformer and MUSIC localization algorithms, known from near-field source localization and direction-of-arrival estimation, are applied to the 3D backscatter scenario and their performance in terms of localization accuracy is evaluated. We discuss the impact of different transceiver modes known from the literature, which evaluate different send and receive antenna path combinations for a single localization, as in multiple input multiple output (MIMO) systems. Furthermore, we propose a new Singledimensional-MIMO (S-MIMO) transceiver mode, which is especially suited for use with mobile robot systems. Monte-Carlo simulations based on a realistic multipath error model ensure spatial correlation of the simulated signals, and serve to critically appraise the accuracies of the different localization approaches. A synthetic uniform rectangular array created by a robotic arm is used to evaluate selected localization techniques. We use an Ultra High Frequency (UHF) Radiofrequency Identification (RFID) setup to compare measurements with the theory and simulation. The results show how a mean localization accuracy of less than 30 cm can be reached in an indoor environment. Further simulations demonstrate how the distance between aperture and tag affects the localization accuracy and how the size and grid spacing of the rectangular array need to be adapted to improve the localization accuracy down to orders of magnitude in the centimeter range, and to maximize array efficiency in terms of localization accuracy per number of elements. PMID:27347976

  4. Depth-kymography of vocal fold vibrations: part II. Simulations and direct comparisons with 3D profile measurements

    Energy Technology Data Exchange (ETDEWEB)

    Mul, Frits F M de; George, Nibu A; Qiu Qingjun; Rakhorst, Gerhard; Schutte, Harm K [Department of Biomedical Engineering BMSA, Faculty of Medicine, University Medical Center Groningen UMCG, University of Groningen, PO Box 196, 9700 AD Groningen (Netherlands)], E-mail: ffm@demul.net

    2009-07-07

    We report novel direct quantitative comparisons between 3D profiling measurements and simulations of human vocal fold vibrations. Until now, in human vocal folds research, only imaging in a horizontal plane was possible. However, for the investigation of several diseases, depth information is needed, especially when the two folds act differently, e.g. in the case of tumour growth. Recently, with our novel depth-kymographic laryngoscope, we obtained calibrated data about the horizontal and vertical positions of the visible surface of the vibrating vocal folds. In order to find relations with physical parameters such as elasticity and damping constants, we numerically simulated the horizontal and vertical positions and movements of the human vocal folds while vibrating and investigated the effect of varying several parameters on the characteristics of the phonation: the masses and their dimensions, the respective forces and pressures, and the details of the vocal tract compartments. Direct one-to-one comparison with measured 3D positions presents-for the first time-a direct means of validation of these calculations. This may start a new field in vocal folds research.

  5. Comparison of a 3-D GPU-Assisted Maxwell Code and Ray Tracing for Reflectometry on ITER

    Science.gov (United States)

    Gady, Sarah; Kubota, Shigeyuki; Johnson, Irena

    2015-11-01

    Electromagnetic wave propagation and scattering in magnetized plasmas are important diagnostics for high temperature plasmas. 1-D and 2-D full-wave codes are standard tools for measurements of the electron density profile and fluctuations; however, ray tracing results have shown that beam propagation in tokamak plasmas is inherently a 3-D problem. The GPU-Assisted Maxwell Code utilizes the FDTD (Finite-Difference Time-Domain) method for solving the Maxwell equations with the cold plasma approximation in a 3-D geometry. Parallel processing with GPGPU (General-Purpose computing on Graphics Processing Units) is used to accelerate the computation. Previously, we reported on initial comparisons of the code results to 1-D numerical and analytical solutions, where the size of the computational grid was limited by the on-board memory of the GPU. In the current study, this limitation is overcome by using domain decomposition and an additional GPU. As a practical application, this code is used to study the current design of the ITER Low Field Side Reflectometer (LSFR) for the Equatorial Port Plug 11 (EPP11). A detailed examination of Gaussian beam propagation in the ITER edge plasma will be presented, as well as comparisons with ray tracing. This work was made possible by funding from the Department of Energy for the Summer Undergraduate Laboratory Internship (SULI) program. This work is supported by the US DOE Contract No.DE-AC02-09CH11466 and DE-FG02-99-ER54527.

  6. Frontonasal dysmorphology in bipolar disorder by 3D laser surface imaging and geometric morphometrics: comparisons with schizophrenia.

    LENUS (Irish Health Repository)

    Hennessy, Robin J

    2010-09-01

    Any developmental relationship between bipolar disorder and schizophrenia engenders continuing debate. As the brain and face emerge in embryological intimacy, brain dysmorphogenesis is accompanied by facial dysmorphogenesis. 3D laser surface imaging was used to capture the facial surface of 13 male and 14 female patients with bipolar disorder in comparison with 61 male and 75 female control subjects and with 37 male and 32 female patients with schizophrenia. Surface images were analysed using geometric morphometrics and 3D visualisations to identify domains of facial shape that distinguish bipolar patients from controls and bipolar patients from those with schizophrenia. Both male and female bipolar patients evidenced significant facial dysmorphology: common to male and female patients was overall facial widening, increased width of nose, narrowing of mouth and upward displacement of the chin; dysmorphology differed between male and female patients for nose length, lip thickness and tragion height. There were few morphological differences in comparison with schizophrenia patients. That dysmorphology of the frontonasal prominences and related facial regions in bipolar disorder is more similar to than different from that found in schizophrenia indicates some common dysmorphogenesis. Bipolar disorder and schizophrenia might reflect similar insult(s) acting over slightly differing time-frames or slightly differing insult(s) acting over a similar time-frame.

  7. Qualitative and quantitative assessment of wrist MRI at 3.0T - Comparison between isotropic 3D turbo spin echo and isotropic 3D fast field echo and 2D turbo spin echo

    Energy Technology Data Exchange (ETDEWEB)

    Jung, Jee Young [Dept. of Radiology, Chungang Univ. Hospital, School of Medicine, Chungang Univ. (Korea, Republic of); Yoon, Young Cheol [Dept. of Radiology, Samsung Medical Center, School of Medicine, Sungkyunkwan Univ. (Korea, Republic of)], e-mail: ycyoon@skku.edu; Jung, Jin Young [Dept. of Radiology, Saint Paul' s Hospital, The Catholic Univ. (Korea, Republic of); Choe, Bong-Keun [Dept. of Preventive Medicine, School of Medicine, Kyung Hee Univ., Seoul (Korea, Republic of)

    2013-04-15

    Background: Isotropic three-dimensional (3D) magnetic resonance imaging (MRI) has been applied to various joints. However, comparison for image quality between isotropic 3D MRI and two-dimensional (2D) turbo spin echo (TSE) sequence of the wrist at a 3T MR system has not been investigated. Purpose: To compare the image quality of isotropic 3D MRI including TSE intermediate-weighted (VISTA) sequence and fast field echo (FFE) sequence with 2D TSE intermediate-weighted sequence of the wrist joint at 3.0 T. Material and Methods: MRI was performed in 10 wrists of 10 healthy volunteers with isotropic 3D sequences (VISTA and FFE) and 2D TSE intermediate-weighted sequences at 3.0 T. The signal-to-noise ratio (SNR) was obtained by imaging phantom and noise-only image. Contrast ratios (CRs) were calculated between fluid and cartilage, triangular fibrocartilage complex (TFCC), and the scapholunate ligament. Two radiologists independently assessed the visibility of TFCC, carpal ligaments, cartilage, tendons and nerves with a four-point grading scale. Statistical analysis to compare CRs (one way ANOVA with a Tukey test) and grades of visibility (Kruskal-Wallis test) between three sequences and those for inter-observer agreement (kappa analysis) were performed. Results: The SNR of 2D TSE (46.26) was higher than those of VISTA (23.34) and 3D FFE (19.41). CRs were superior in 2D TSE than VISTA (P = 0.02) for fluid-cartilage and in 2D TSE than 3D FFE (P < 0.01) for fluid-TFCC. The visibility was best in 2D TSE (P < 0.01) for TFCC and in VISTA (P = 0.01) for scapholunate ligament. The visibility was better in 2D TSE and 3D FFE (P 0.04) for cartilage and in VISTA than 3D FFE (P < 0.01) for TFCC. The inter-observer agreement for the visibility of anatomic structures was moderate or substantial. Conclusion: Image quality of 2D TSE was superior to isotropic 3D MR imaging for cartilage, and TFCC. 3D FFE has better visibility for cartilage than VISTA and VISTA has superior visibility for

  8. Comparison of parallel and spiral tagged MRI geometries in estimation of 3-D myocardial strains

    Science.gov (United States)

    Tustison, Nicholas J.; Amini, Amir A.

    2005-04-01

    Research involving the quantification of left ventricular myocardial strain from cardiac tagged magnetic resonance imaging (MRI) is extensive. Two different imaging geometries are commonly employed by these methodologies to extract longitudinal deformation. We refer to these imaging geometries as either parallel or spiral. In the spiral configuration, four long-axis tagged image slices which intersect along the long-axis of the left ventricle are collected and in the parallel configuration, contiguous tagged long-axis images spanning the width of the left ventricle between the lateral wall and the septum are collected. Despite the number of methodologies using either or both imaging configurations, to date, no comparison has been made to determine which geometry results in more accurate estimation of strains. Using previously published work in which left ventricular myocardial strain is calculated from 4-D anatomical NURBS models, we compare the strain calculated from these two imaging geometries in both simulated tagged MR images for which ground truth strain is available as well as in in vivo data. It is shown that strains calculated using the parallel imaging protocol are more accurate than that calculated using spiral protocol.

  9. Improvement of space-time kinetics capability in the SNATCH solver and comparison to KIN3D/PARTISN results

    International Nuclear Information System (INIS)

    Efforts are going on both at the CEA Cadarache and at the Karlsruhe Institute of Technology (KIT) to develop an efficient and robust three-dimensional neutron kinetics solver to be employed as a new neutronic tool for simulating severe accident transients with the SIMMER code. To this aim, the SNATCH space-time kinetics has been recently extended and coupled with the SIMMER code in a multiple-channel approach. On the other hand, the PARTISN code was coupled to KIN3D, a time-dependent model for neutron kinetics of the ERANOS code system and applied to transient analyses. In this paper, the recent SNATCH extensions are introduced and a comparison to the KIN3D/PARTISN code is provided. SNATCH implementation of the Improved Quasi-Static Method (IQM) relies on a special treatment in which Point Kinetics (PK) parameters are computed for each micro time step by assuming a linear variation of the flux shape over a shape time step. This procedure provides a better coupling between the PK parameters and material perturbations. A new formulation for the reactivity computation is implemented in SNATCH, as the original formulation does not account for reactivity variation for source-induced transients. Comparative results show that, overall, SNATCH neutron kinetics results are coherent with KIN3D/PARTISN for a fast transient induced by a source-jerk in a three-dimensional subcritical system driven by an external source. It is also found that reactivity variations are more correctly assessed by the new formulation on reactivity. (author)

  10. Comparison of Three-Dimensional (3D) Conformal Proton Radiotherapy (RT), 3D Conformal Photon RT, and Intensity-Modulated RT for Retroperitoneal and Intra-Abdominal Sarcomas

    Energy Technology Data Exchange (ETDEWEB)

    Swanson, Erika L. [Department of Radiation Oncology, University of Florida, Gainesville, Florida (United States); Indelicato, Daniel J., E-mail: dindelicato@floridaproton.org [Department of Radiation Oncology, University of Florida, Gainesville, Florida (United States); University of Florida Proton Therapy Institute, Jacksonville, Florida (United States); Louis, Debbie; Flampouri, Stella; Li, Zuofeng [University of Florida Proton Therapy Institute, Jacksonville, Florida (United States); Morris, Christopher G.; Paryani, Nitesh [Department of Radiation Oncology, University of Florida, Gainesville, Florida (United States); Slopsema, Roelf [University of Florida Proton Therapy Institute, Jacksonville, Florida (United States)

    2012-08-01

    Purpose: To compare three-dimensional conformal proton radiotherapy (3DCPT), intensity-modulated photon radiotherapy (IMRT), and 3D conformal photon radiotherapy (3DCRT) to predict the optimal RT technique for retroperitoneal sarcomas. Methods and Materials: 3DCRT, IMRT, and 3DCPT plans were created for treating eight patients with retroperitoneal or intra-abdominal sarcomas. The clinical target volume (CTV) included the gross tumor plus a 2-cm margin, limited by bone and intact fascial planes. For photon plans, the planning target volume (PTV) included a uniform expansion of 5 mm. For the proton plans, the PTV was nonuniform and beam-specific. The prescription dose was 50.4 Gy/Cobalt gray equivalent CGE. Plans were normalized so that >95% of the CTV received 100% of the dose. Results: The CTV was covered adequately by all techniques. The median conformity index was 0.69 for 3DCPT, 0.75 for IMRT, and 0.51 for 3DCRT. The median inhomogeneity coefficient was 0.062 for 3DCPT, 0.066 for IMRT, and 0.073 for 3DCRT. The bowel median volume receiving 15 Gy (V15) was 16.4% for 3DCPT, 52.2% for IMRT, and 66.1% for 3DCRT. The bowel median V45 was 6.3% for 3DCPT, 4.7% for IMRT, and 15.6% for 3DCRT. The median ipsilateral mean kidney dose was 22.5 CGE for 3DCPT, 34.1 Gy for IMRT, and 37.8 Gy for 3DCRT. The median contralateral mean kidney dose was 0 CGE for 3DCPT, 6.4 Gy for IMRT, and 11 Gy for 3DCRT. The median contralateral kidney V5 was 0% for 3DCPT, 49.9% for IMRT, and 99.7% for 3DCRT. Regardless of technique, the median mean liver dose was <30 Gy, and the median cord V50 was 0%. The median integral dose was 126 J for 3DCPT, 400 J for IMRT, and 432 J for 3DCRT. Conclusions: IMRT and 3DCPT result in plans that are more conformal and homogenous than 3DCRT. Based on Quantitative Analysis of Normal Tissue Effects in Clinic benchmarks, the dosimetric advantage of proton therapy may be less gastrointestinal and genitourinary toxicity.

  11. Monoligated monovalent Ni: the 3d(Ni)9 manifold of states of NiCu and comparison to the 3d9 States of AlNi, NiH, NiCl, and NiF.

    Science.gov (United States)

    Rothschopf, Gretchen K; Morse, Michael D

    2005-12-22

    A dispersed fluorescence investigation of the low-lying electronic states of NiCu has allowed the observation of four out of the five states that derive from the 3d(Ni)9 3d(Cu)10 sigma2 manifold. Vibrational levels of the ground X2delta(5/2) state corresponding to v = 0-11 are observed and are fit to provide omega(e) = 275.93 +/- 1.06 cm(-1) and omega(e)x(e) = 1.44 +/- 0.11 cm(-1). The v = 0 levels of the higher lying states deriving from the 3d(Ni)9 3d(Cu)10 sigma2 manifold are located at 912, 1466, and 1734 cm(-1), and these states are assigned to omega values of 3/2, 1/2, and 3/2, respectively. The last of these assignments is based on selection rules and is unequivocal; the first two are based on a comparison to ab initio and ligand field calculations and could conceivably be in error. It is also possible that the v = 0 level of the state found at 912 cm(-1) is not observed, so that T0 for the lowest excited state actually lies near 658 cm(-1). These results are modeled using a matrix Hamiltonian based on the existence of a ground manifold of states deriving from the 3d9 configuration on nickel. This matrix Hamiltonian is also applied to the spectroscopically well-known molecules AlNi, NiH, NiCl, and NiF. The term energies of the 2sigma+, 2pi, and 2delta states of these molecules, which all derive from a 3d9 configuration on the nickel atom, display a clear and understandable trend as a function of the electronegativity of the ligands.

  12. Comparison of the Application of Web 3D Technology%Web 3D技术的应用比较

    Institute of Scientific and Technical Information of China (English)

    黄伟峰

    2014-01-01

    Web 3D技术有多种,都有适用的场合,介绍了有代表性的几种Web 3D技术;Vrml、Cortona、WireFusion、EON、Virtools、Quest3D、Flash 3D和Unity 3D,比较了它们各自的特点和应用。%There are variety technology of Web 3D, and everyone has applicable occasion. Introduces several representative Web 3D technology;Such as Vrml, Cortona, WireFusion, EON, Virtools, Quest3D, Flash 3D and Unity 3D. It Compared their char⁃acteristic and application.

  13. NSF Research Experience for Undergraduates: 3-D Characterization and Comparison of Vegetation Structure in a Tropical Premontane Wet Forest

    Science.gov (United States)

    Washington-Allen, R. A.; Davis, K.; Falkowski, T.; Tarbox, B.; Delgado, A.; March, R.; Moore, G. W.; Tjoelker, M.; Gonzalez, E.; Houser, C.

    2011-12-01

    30-m diameter plots at 4-cm spacing, 270° vertical, and 360° horizontal, generating a >100 million point cloud per site at ±2-mm range accuracy. Registration within 2-mm RMSE yielded a 3-D virtual environment per site where tree measurements were made manually. Comparisons showed that GPR may be masked by high soil moisture. DBH error measures ranged from ± 0.6 to 5.18 % and height was 0.26 to 20.19 % for carbon farm to primary forest. The height comparison indicated that the laser clinometer consistently underestimated tree heights, particularly on the primary forest site where trees were over 35-m.

  14. SU-E-T-538: Lung SBRT Dosimetric Comparison of 3D Conformal and RapidArc Planning

    Energy Technology Data Exchange (ETDEWEB)

    Jiang, R; Zhan, L; Osei, E [Grand River Hospital, Kitchener, ON (Canada)

    2015-06-15

    Purpose: Dose distributions of RapidArc Plan can be quite different from standard 3D conformal radiation therapy. SBRT plans can be optimized with high conformity or mimic the 3D conformal treatment planning with very high dose in the center of the tumor. This study quantifies the dosimetric differences among 3D conformal plan; flattened beam and FFF beam RapidArc Plans for lung SBRT. Methods: Five lung cancer patients treated with 3D non-coplanar SBRT were randomly selected. All the patients were CT scanned with 4DCT to determine the internal target volume. Abdominal compression was applied to minimize respiratory motion for SBRT patients. The prescription dose was 48 Gy in 4 fractions. The PTV coverage was optimized by two groups of objective function: one with high conformity, another mimicking 3D conformal dose distribution with high dose in the center of PTV. Optimization constraints were set to meet the criteria of the RTOG-0915 protocol. All VMAT plans were optimized with the RapidArc technique using four full arcs in Eclipse treatment planning system. The RapidArc SBRT plans with flattened 6MV beam and 6MV FFF beam were generated and dosimetric results were compared with the previous treated 3D non-coplanar plans. Results: All the RapidArc plans with flattened beam and FFF beam had similar results for the PTV and OARs. For the high conformity optimization group, The DVH of PTV exhibited a steep dose fall-off outside the PTV compared to the 3D non-coplanar plan. However, for the group mimicking the 3D conformal target dose distribution, although the PTV is very similar to the 3D conformal plan, the ITV coverage is better than 3D conformal plan. Conclusion: Due to excellent clinical experiences of 3D conformal SBRT treatment, the Rapid Arc optimization mimicking 3D conformal planning may be suggested for clinical use.

  15. In-house quality check of external beam plans using 3D treatment planning systems - a DVH comparison.

    Science.gov (United States)

    Kumar, Ayyalasomayajula Anil; Akula, Roopa Rani; Ayyangar, Komanduri; P, Krishna Reddy; Vuppu, Srinivas; Narayana, P V Lakshmi; Rao, A Durga Prasada

    2016-01-01

    This paper presents a new approach towards the quality assurance of external beam plans using in-house-developed DICOM import and export software in a clinical setup. The new approach is different from what is currently used in most clinics, viz., only MU and point dose are verified. The DICOM-RT software generates ASCII files to import/export structure sets, treatment beam data, and dose-volume histo-grams (DVH) from one treatment planning system (TPS) to the other. An efficient and reliable 3D planning system, ROPS, was used for verifying the accuracy of treatment plans and treatment plan parameters. With the use of this new approach, treatment plans planned using Varian Eclipse planning system were exported to ROPS planning system. Important treatment and dosimetrical data, such as the beam setup accuracy, target dose coverage, and dose to critical structures, were also quantitatively verified using DVH comparisons. Two external beam plans with diverse photon energies were selected to test the new approach. The satisfactory results show that the new approach is feasible, easy to use, and can be used as an adjunct test for patient treatment quality check. PMID:27167271

  16. Comparison of 3D conformal radiotherapy vs. intensity modulated radiation therapy (IMRT) of a stomach cancer treatment;Comparacion dosimetrica de radioterapia conformal 3D versus radioterapia de intensidad modulada (IMRT) de un tratamiento de cancer de estomago

    Energy Technology Data Exchange (ETDEWEB)

    Bernui de V, Maria Giselle; Cardenas, Augusto; Vargas, Carlos [Hospital Nacional Carlos Alberto Seguin Escobedo (ESSALUD), Arequipa (Peru). Servicio de Radioterapia

    2009-07-01

    The purpose of this work was to compare the dosimetry in 3D Conformal Radiotherapy with Intensity Modulated Radiation Therapy (IMRT) in a treatment of stomach cancer. For this comparison we selected a patient who underwent subtotal gastrectomy and D2 dissection for a T3N3 adenocarcinoma Mx ECIIIB receiving treatment under the scheme Quimio INT 0116 - in adjuvant radiotherapy. In the treatment plan was contouring the Clinical Target Volume (CTV) and the Planning Target Volume (PTV) was generated from the expansion of 1cm of the CTV, the risky organs contouring were: the liver, kidneys and spinal cord, according to the consensus definition of volumes in gastric cancer. The 3D Conformal Radiotherapy planning is carried out using 6 half beams following the Leong Trevol technique; for the IMRT plan was used 8 fields, the delivery technique is step-and-shoot. In both cases the fields were coplanar, isocentric and the energy used was 18 MV. Intensity Modulated Radiation Therapy (IMRT), in this case has proved to be a good treatment alternative to the technique of 3D Conformal Radiotherapy; the dose distributions with IMRT have better coverage of PTV and positions of the hot spots, as well as the kidneys volume that received higher doses to 2000 cGy is lower, but the decrease in dose to the kidneys is at the expense of increased dose in other organs like the liver. (author)

  17. Inter-comparison of drought indicators derived from multiple precipitation datasets in Africa

    Science.gov (United States)

    Naumann, Gustavo; Dutra, Emanuel; Barbosa, Paulo; Pappenberger, Florian; Wetterhall, Fredrik

    2013-04-01

    This study investigates the potential of implementing different drought indicators to improve drought monitoring capabilities at continental scale. Several global and continental datasets based on re-analysis, gridded observation, and remote sensing data were tested. At regional level the capabilities of each indicator and dataset on five regions on the African continent (Oum er-rbia, Blue Nile, Upper Niger, Limpopo and the Great Horn of Africa) were compared. The five precipitation datasets used were the ERA - Interim reanalysis (0.5°x0.5° resolution from 1979 to 2010), Tropical Rainfall Measuring Mission (TRMM) satellite monthly rainfall product 3B43 (0.25°x0.25° resolution from 1998 to 2010), the Global Precipitation Climatology Centre (GPCC) gridded precipitation dataset V.5 (1°x1° resolution from 1901 to 2010), the Global Precipitation Climatology Project (GPCP) Global Monthly Merged Precipitation Analyses (2.5°x2.5° resolution from 1979 to 2010), and the Climate Prediction Center Merged Analysis of Precipitation (CMAP, 2.5°x2.5° resolution from 1979 to 2010). The set of indicators proposed included Standardized Precipitation index (SPI), Standardized Precipitation-Evaporation Index (SPEI), Standardized Run-off index (SRI), Soil Moisture Anomalies (SMA). A comparison of the annual cycle and monthly precipitation time series shows a general agreement in the timing of the peaks including the Great Horn of Africa where there are two rainy seasons. The main differences are observed thus in the ability to represent the magnitude of the wet seasons and extremes. Moreover, for the areas that are under drought, all the datasets agree with the certain time of onset and recovery but there are sometimes disagreements on the area affected. The agreement between datasets depends on the threshold selected to define the drought conditions. The comparison between SPI estimations suggest that the main sources of uncertainties (due by lack of ground information

  18. Experimental comparison of 2D and 3D technology mediated paramedic-physician collaboration in remote emergency medical situations

    DEFF Research Database (Denmark)

    Sonnenwald, Diane H.; Maurin, Hanna; Cairns, Bruce;

    2006-01-01

    We are investigating the potential of 3D telepresence technology to support collaboration among geographically separated medical personnel in trauma emergency care situations. 3D telepresence technology has the potential to provide richer visual information than current 2D video conferencing tech...

  19. Comparison of different coupling CFD–STH approaches for pre-test analysis of a TALL-3D experiment

    Energy Technology Data Exchange (ETDEWEB)

    Papukchiev, Angel, E-mail: angel.papukchiev@grs.de [Gesellschaft fuer Anlagen- und Reaktorsicherheit (GRS) mbH, Garching n. Munich (Germany); Jeltsov, Marti; Kööp, Kaspar; Kudinov, Pavel [KTH Royal Institute of Technology, Stockholm (Sweden); Lerchl, Georg [Gesellschaft fuer Anlagen- und Reaktorsicherheit (GRS) mbH, Garching n. Munich (Germany)

    2015-08-15

    Highlights: • Thermal-hydraulic system codes and CFD tools are coupled. • Pre-test calculations for the TALL-3D facility are performed. • Complex flow and heat transfer phenomena are modeled. • Comparative analyses have been performed. - Abstract: The system thermal-hydraulic (STH) code ATHLET was coupled with the commercial 3D computational fluid dynamics (CFD) software package ANSYS CFX to improve ATHLET simulation capabilities for flows with pronounced 3D phenomena such as flow mixing and thermal stratification. Within the FP7 European project THINS (Thermal Hydraulics of Innovative Nuclear Systems), validation activities for coupled thermal-hydraulic codes are being carried out. The TALL-3D experimental facility, operated by KTH Royal Institute of Technology in Stockholm, is designed for thermal-hydraulic experiments with lead-bismuth eutectic (LBE) coolant at natural and forced circulation conditions. GRS carried out pre-test simulations with ATHLET–ANSYS CFX for the TALL-3D experiment T01, while KTH scientists perform these analyses with the coupled code RELAP5/STAR CCM+. In the experiment T01 the main circulation pump is stopped, which leads to interesting thermal-hydraulic transient with local 3D phenomena. In this paper, the TALL-3D behavior during T01 is analyzed and the results of the coupled pre-test calculations, performed by GRS (ATHLET–ANSYS CFX) and KTH (RELAP5/STAR CCM+) are directly compared.

  20. 3D Simulations of Plasma Filaments in the Scrape Off Layer: A Comparison with Models of Reduced Dimensionality

    CERN Document Server

    Easy, Luke; Omotani, John; Dudson, Benjamin; Havlíčková, Eva; Tamain, Patrick; Naulin, Volker; Nielsen, Anders H

    2014-01-01

    This paper presents simulations of isolated 3D filaments in a slab geometry obtained using a 3D reduced fluid code. First, systematic scans were performed to investigate how the dynamics of a filament are affected by its amplitude, perpendicular size and parallel extent. The perpendicular size of the filament was found to have a strong influence on its motions, as it determined the relative importance of parallel currents to polarisation and viscous currents, whilst drift-wave instabilities were observed if the initial amplitude of the blob was increased sufficiently. Next, the 3D simulations were compared to 2D simulations using different parallel closures; namely, the sheath dissipation closure, which neglects parallel gradients, and the vorticity advection closure, which neglects the influence of parallel currents. The vorticity advection closure was found to not replicate the 3D perpendicular dynamics and overestimated the initial radial acceleration of all the filaments studied. In contrast, a more satis...

  1. Comparison between 3D-CTA with volume reconstruction and 3D-DSA in diagnosis of acute rupture of minute cerebral aneurysms%容积重建成像3D-CTA与3D-DSA在诊断急性破裂性颅内微小动脉瘤的研究

    Institute of Scientific and Technical Information of China (English)

    曾少建; 舒航; 陈光忠; 李昭杰; 詹升全; 林晓风; 周东

    2010-01-01

    Objective To evaluate the diagnostic value of three dimensional computed tomographic angiog-raphy (3D-CTA) with volume reconstruction (VR) and 3D digital subtraction angiography (3D-DSA) in diagnosis of minimal cerebral aneurysms. Method A total of 174 patients in Guangdong General Hospital, May 2007 to November 2008, of subarachnoid hemorrhage were checked upon the original imaging obtained by GE' s Light Speed Plus 64 volume spiral CT scanner at first, and then by the means of using Volume rendering (VR) three dimen-sional reconstruction and assisting the use of multiple planar reconstruction (MPR) to complete the 3D-DSA imag-ing at last. The volume rendering (VR) was assessed. Results Eleven very small cerebral aneurysms in 174 pa-tients with subarachnoid hemorrhage were diagnosed by CTA and 10 of them by 3D-DSA. Finally, all of 11 patients were confirmed by intracranial operations. The 3D-CTA (VR) clearly showed the shape and size of the intracranial aneurysms and their relationship to adjacent structures as well. There was no significant difference in the diagnosis of very small cerebral aneurysms between 3D-DSA and 3D-CTA(VR). Conclusions The 3D-CTA (VR) is a re-liable and rapid non-invasive diagnostic device for very small intracranial aneurysms. For the emergency operation,3D-CTA (VR) can provide more detailed imaging information to help the development of treatment strategy.%目的 对比研究容积重建成像三维CT血管造影与三维DSA(3D-DSA)在颅内微小动脉瘤诊疗中的临床应用价值.方法 对广东省人民医院2007年5月至2008年11月收治的174例蛛网膜下腔出血患者首先采用采用GE公司的Light Speed Plus 64排容积螺旋CT机获得原始图像,采用容积重建成像技术(VR)进行三维重建.并辅助运用多轴面重建(MPR),然后再行全脑血管造影术,并行3D-DSA成像.结果 本组174例蛛网膜下腔出血患者诊断为颅内微小动脉瘤11例,均经开颅手术证实;其中CTA诊断11例,3D

  2. Comparison between 3D dynamics filter technique, field-in-field, electronic compensator in breast cancer; Comparacao entre tecnica 3D com filtro dinamico, field-in-field e compensacao eletronica para cancer de mama

    Energy Technology Data Exchange (ETDEWEB)

    Trindade, Cassia; Silva, Leonardo P.; Martins, Lais P.; Garcia, Paulo L.; Santos, Maira R.; Bastista, Delano V.S.; Vieira, Anna Myrian M.T.L.; Rocha, Igor M., E-mail: cassiatr@gmail.com [Instituto Nacional de Cancer (INCA), Rio de Janeiro, RJ (Brazil)

    2012-12-15

    The radiotherapy has been used in a wild scale in breast cancer treatment. With this high demand, new technologies have been developed to improve the dose distribution in the target while reducing the dose delivered in critical organs. In this study, performed with one clinical case, three planning were done for comparison: 3D technique with dynamic filter, 3D with field-in-field technique (forward-planned IMRT) and 3D technique using electronic compensator (ECOMP). The planning were done with a 6MV photon beam using the Eclipse software, version 8.6 (Varian Medical Systems). The PTV was drawn covering the whole breast and the critical organs were: the lung on the irradiated side, the heart, the contralateral breast and the anterior descending coronary artery (LAD). The planning using the compensator technique permitted more homogeneous dose distribution in the target volume. The V20 value of the lung on the irradiated side was 8,3% for the electronic compensator technique, 8,9% for the field-in-field technique and 8,2% for the dynamic filter technique. For the heart the dose range was 15.7 - 139.9 cGy, 16.3 - 148.4 cGy for the dynamic filter technique and 19.6 - 157.0 cGy for the field-in-field technique. The dose gradient was 11% with compensator electronic, 15% dynamic filter technique and 13% with field-in-field. The application of electronic technique in breast cancer treatment allows better dose distribution while reduces dose in critical organs, but in the same time requires a quality assurance. (author)

  3. Comparison of Radiative Energy Flows in Observational Datasets and Climate Modeling

    Science.gov (United States)

    Raschke, Ehrhard; Kinne, Stefan; Rossow, William B.; Stackhouse, Paul W. Jr.; Wild, Martin

    2016-01-01

    This study examines radiative flux distributions and local spread of values from three major observational datasets (CERES, ISCCP, and SRB) and compares them with results from climate modeling (CMIP3). Examinations of the spread and differences also differentiate among contributions from cloudy and clear-sky conditions. The spread among observational datasets is in large part caused by noncloud ancillary data. Average differences of at least 10Wm(exp -2) each for clear-sky downward solar, upward solar, and upward infrared fluxes at the surface demonstrate via spatial difference patterns major differences in assumptions for atmospheric aerosol, solar surface albedo and surface temperature, and/or emittance in observational datasets. At the top of the atmosphere (TOA), observational datasets are less influenced by the ancillary data errors than at the surface. Comparisons of spatial radiative flux distributions at the TOA between observations and climate modeling indicate large deficiencies in the strength and distribution of model-simulated cloud radiative effects. Differences are largest for lower-altitude clouds over low-latitude oceans. Global modeling simulates stronger cloud radiative effects (CRE) by +30Wmexp -2) over trade wind cumulus regions, yet smaller CRE by about -30Wm(exp -2) over (smaller in area) stratocumulus regions. At the surface, climate modeling simulates on average about 15Wm(exp -2) smaller radiative net flux imbalances, as if climate modeling underestimates latent heat release (and precipitation). Relative to observational datasets, simulated surface net fluxes are particularly lower over oceanic trade wind regions (where global modeling tends to overestimate the radiative impact of clouds). Still, with the uncertainty in noncloud ancillary data, observational data do not establish a reliable reference.

  4. Comparison of accuracy and time-efficiency of CT colonography between conventional and panoramic 3D interpretation methods: An anthropomorphic phantom study

    International Nuclear Information System (INIS)

    Purpose: To retrospectively compare the conventional three-dimensional (3D) interpretation method with the panoramic 3D method with regard to accuracy and time-efficiency in the detection of colonic polyps, using pig colonic phantoms as the standard of reference. Materials and methods: One-hundred and sixty-two polyps were created in 18 pig colonic phantoms. CT colonography was performed with a 64-row detector CT scanner. Two-week interval reviews for the CTC image dataset with both the conventional and the panoramic 3D interpretation method were independently performed by three radiologists. The sensitivities of both methods were compared with the McNemar test. The mean interpretation time for each interpretation method was also assessed and compared with the Wilcoxon signed-rank test. Results: Compared with the conventional 3D method (0.96 for reader 1, 0.89 for reader 2, and 0.97 for reader 3), the panoramic method revealed comparable sensitivities (0.91 for reader 1, 0.86 for reader 2, and 0.93 for reader 3) (p > 0.05). Interpretation time was significantly shorter with the panoramic method (115.1 ± 32.7 s for reader 1, 229.7 ± 72.2 s for reader 2, and 282.6 ± 113.7 s for reader 3) than with the conventional method (218.9 ± 59.9 s for reader 1, 379.4 ± 117.0 s for reader 2, and 458.7 ± 149.4 s for reader 3) for all readers (p < 0.05). Conclusion: Compared with the conventional 3D interpretation method, the panoramic 3D interpretation method shows improved time-efficiency and comparable sensitivity in the detection of colonic polyps.

  5. 三种人体数据集的腓骨瓣三维可视化应用研究%Application of 3D visnalization models of fibular flap developed by three human digital datasets

    Institute of Scientific and Technical Information of China (English)

    豆勇刚; 余斌; 钟梅; 金丹; 黎健伟; 张元智; 裴国献

    2008-01-01

    目的 研究三种人体数据集的腓骨瓣三维可视化应用. 方法 ①健康自愿者2人,经肘静脉注射造影剂,使用64排多层螺旋CT进行双下肢扫描,观察腓动脉及其分支分布及彼此间的吻合情况,将下肢二维灰度.DICOM格式图像以三维体数据的形式输入计算机,应用Amira4.1软件对腓动脉及腓骨的结构进行三维重建并立体显示.②取新鲜捐献尸体1具,采用改良的明胶-氧化铅灌注术经腹主动脉灌注,灌注后对双下肢行连续螺旋CT扫描,观察腓动脉及其分支的分布情况.利用Amira4.1软件对腓动脉及其分支结构进行三维重建并立体显示.③应用"虚拟中国人"(VCH)男性3号数据集,在薄层断面图像上观察小腿主要解剖结构,应用Amira4.1软件对小腿主要结构进行计算机三维重建并立体显示. 结果 运用Amira4.1图像处理软件,在三维表面重建的图像中可清晰地观察到外科腓骨瓣各解剖结构的形态,特别是腓动脉的分支情况和体表的投影得到很好的显示.利用软件的Movie Maker模板创建电影文件,将其制作为电影,画面清晰流畅,可直观、立体地显示形态特征. 结论 三种数据集重建的图像可以提供正常腓骨瓣三维动态解剖,对腓骨瓣的临床试验、基础研究、临床训练和手术规划具有重要应用价值.%Objective To explore application of the 3D visualization models of fibular flap developed by 3 human digital datasets. Methods First, 2 adult volunteers underwent contrast-enhance CT angiography of lower limbs using a 64-row multi-slice spiral CT after injection of Ultravist (3.5ml/s) through the median cubital vein. The 2D images from the scanning in DICOM format were transformed into three-dimensional data by computer. The structures of fibular flap were observed and digital visualization models of fibular flap were established by three-dimensional computerixed reconstruction out of these data using Amira 4. 1

  6. A dosimetric comparison of 3D conformal vs intensity modulated vs volumetric arc radiation therapy for muscle invasive bladder cancer

    Directory of Open Access Journals (Sweden)

    Foroudi Farshad

    2012-07-01

    Full Text Available Abstract Background To compare 3 Dimensional Conformal radiotherapy (3D-CRT with Intensity Modulated Radiotherapy (IMRT with Volumetric-Modulated Arc Therapy (VMAT for bladder cancer. Methods Radiotherapy plans for 15 patients with T2-T4N0M0 bladder cancer were prospectively developed for 3-DCRT, IMRT and VMAT using Varian Eclipse planning system. The same radiation therapist carried out all planning and the same clinical dosimetric constraints were used. 10 of the patients with well localised tumours had a simultaneous infield boost (SIB of the primary tumour planned for both IMRT and VMAT. Tumour control probabilities and normal tissue complication probabilities were calculated. Results Mean planning time for 3D-CRT, IMRT and VMAT was 30.0, 49.3, and 141.0 minutes respectively. The mean PTV conformity (CI index for 3D-CRT was 1.32, for IMRT 1.05, and for VMAT 1.05. The PTV Homogeneity (HI index was 0.080 for 3D-CRT, 0.073 for IMRT and 0.086 for VMAT. Tumour control and normal tissue complication probabilities were similar for 3D-CRT, IMRT and VMAT. The mean monitor units were 267 (range 250–293 for 3D-CRT; 824 (range 641–1083 for IMRT; and 403 (range 333–489 for VMAT (P  Conclusions VMAT is associated with similar dosimetric advantages as IMRT over 3D-CRT for muscle invasive bladder cancer. VMAT is associated with faster delivery times and less number of mean monitor units than IMRT. SIB is feasible in selected patients with localized tumours.

  7. Comparison of 3D point clouds produced by LIDAR and UAV photoscan in the Rochefort cave (Belgium)

    Science.gov (United States)

    Watlet, Arnaud; Triantafyllou, Antoine; Kaufmann, Olivier; Le Mouelic, Stéphane

    2016-04-01

    Amongst today's techniques that are able to produce 3D point clouds, LIDAR and UAV (Unmanned Aerial Vehicle) photogrammetry are probably the most commonly used. Both methods have their own advantages and limitations. LIDAR scans create high resolution and high precision 3D point clouds, but such methods are generally costly, especially for sporadic surveys. Compared to LIDAR, UAV (e.g. drones) are cheap and flexible to use in different kind of environments. Moreover, the photogrammetric processing workflow of digital images taken with UAV becomes easier with the rise of many affordable software packages (e.g. Agisoft, PhotoModeler3D, VisualSFM). We present here a challenging study made at the Rochefort Cave Laboratory (South Belgium) comprising surface and underground surveys. The site is located in the Belgian Variscan fold-and-thrust belt, a region that shows many karstic networks within Devonian limestone units. A LIDAR scan has been acquired in the main chamber of the cave (~ 15000 m³) to spatialize 3D point cloud of its inner walls and infer geological beds and structures. Even if the use of LIDAR instrument was not really comfortable in such caving environment, the collected data showed a remarkable precision according to few control points geometry. We also decided to perform another challenging survey of the same cave chamber by modelling a 3D point cloud using photogrammetry of a set of DSLR camera pictures taken from the ground and UAV pictures. The aim was to compare both techniques in terms of (i) implementation of data acquisition and processing, (ii) quality of resulting 3D points clouds (points density, field vs cloud recovery and points precision), (iii) their application for geological purposes. Through Rochefort case study, main conclusions are that LIDAR technique provides higher density point clouds with slightly higher precision than photogrammetry method. However, 3D data modeled by photogrammetry provide visible light spectral information

  8. Dosimetric comparison of 3D conformal, IMRT, and V-MAT techniques for accelerated partial-breast irradiation (APBI)

    Energy Technology Data Exchange (ETDEWEB)

    Qiu, Jian-Jian [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States); Department of Radiation Oncology, Fudan University Shanghai Cancer Center, Shanghai (China); Department of Oncology, Shanghai Medical College, Fudan University, Shanghai (China); Chang, Zheng; Horton, Janet K.; Wu, Qing-Rong Jackie; Yoo, Sua [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States); Yin, Fang-Fang, E-mail: fangfang.yin@duke.edu [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States)

    2014-07-01

    The purpose is to dosimetrically compare the following 3 delivery techniques: 3-dimensional conformal radiation therapy (3D-CRT), intensity-modulated arc therapy (IMRT), and volumetric-modulated arc therapy (V-MAT) in the treatment of accelerated partial-breast irradiation (APBI). Overall, 16 patients with T1/2N0 breast cancer were treated with 3D-CRT (multiple, noncoplanar photon fields) on the RTOG 0413 partial-breast trial. These cases were subsequently replanned using static gantry IMRT and V-MAT technology to understand dosimetric differences among these 3 techniques. Several dosimetric parameters were used in plan quality evaluation, including dose conformity index (CI) and dose-volume histogram analysis of normal tissue coverage. Quality assurance studies including gamma analysis were performed to compare the measured and calculated dose distributions. The IMRT and V-MAT plans gave more conformal target dose distributions than the 3D-CRT plans (p < 0.05 in CI). The volume of ipsilateral breast receiving 5 and 10 Gy was significantly less using the V-MAT technique than with either 3D-CRT or IMRT (p < 0.05). The maximum lung dose and the ipsilateral lung volume receiving 10 (V{sub 10}) or 20 Gy (V{sub 20}) were significantly less with both V-MAT and IMRT (p < 0.05). The IMRT technique was superior to 3D-CRT and V-MAT of low dose distributions in ipsilateral lung (p < 0.05 in V{sub 5} and D{sub 5}). The total mean monitor units (MUs) for V-MAT (621.0 ± 111.9) were 12.2% less than those for 3D-CRT (707.3 ± 130.9) and 46.5% less than those for IMRT (1161.4 ± 315.6) (p < 0.05). The average machine delivery time was 1.5 ± 0.2 minutes for the V-MAT plans, 7.0 ± 1.6 minutes for the 3D-CRT plans, and 11.5 ± 1.9 minutes for the IMRT plans, demonstrating much less delivery time for V-MAT. Based on this preliminary study, V-MAT and IMRT techniques offer improved dose conformity as compared with 3D-CRT techniques without increasing dose to the ipsilateral lung. In

  9. COMPARISON OF FATIGUE AND CREEP BEHAVIOR BETWEEN 2D AND 3D-C/SiC COMPOSITES

    Institute of Scientific and Technical Information of China (English)

    D. Han; S.R. Qiao; M. Li; J.T. Hou; X.J. Wu

    2004-01-01

    The differences of tension-tension fatigue and tensile creep characters of 2D-C/SiCand 3D-C/SiC composites have been scrutinized to meet the engineering needs. Experiments of tension-tension fatigue and tensile creep are carried out under vacuum high temperature condition. All of the high temperature fatigue curves are flat; the fatigue curves of the 2D-C/SiC are flatter and even parallel to the horizontal axis. While the tension-tension fatigue limit of the 3D-C/SiC is higher than that of the 2D-C/SiC, the fiber pullout length of the fatigue fracture surface of the 3D-C/SiC is longer than that of the 2D-C/SiC, and fracture morphology of the 3D-C/SiC is rougher, and pullout length of the fiber tows is longer. At the same time the 3D-C/SiC has higher tensile creep resistance. The tensile curve and the tensile creep curve of both materials consist of a series of flat step. These phenomena can be explained by the non-continuity of the damage.

  10. Comparison of radiotherapy dosimetry for 3D-CRT, IMRT, and SBRT based on electron density calibration

    Science.gov (United States)

    Kartutik, K.; Wibowo, W. E.; Pawiro, S. A.

    2016-03-01

    Accurate calculation of dose distribution affected by inhomogeneity tissue is required in radiotherapy planning. This study was performed to determine the ratio between radiotherapy planning using 3D-CRT, IMRT, and SBRT based on a calibrated curve of CT-number in the lung for different target's shape in 3D-CRT, IMRT, and spinal cord for SBRT. Calibration curves of CT-number were generated under measurement basis and introduced into TPS, then planning was performed for 3D-CRT, IMRT, and SBRT with 7, and 15 radiation fields. Afterwards, planning evaluation was performed by comparing the DVH curve, HI, and CI. 3D-CRT and IMRT produced the lowest HI at calibration curve of CIRS 002LFC with the value 0.24 and 10. Whereas SBRT produced the lowest HI on a linear calibration curve with a value of 0.361. The highest CI in IMRT and SBRT technique achieved using a linear calibration curve was 0.97 and 1.77 respectively. For 3D-CRT, the highest CI was obtained by using calibration curve of CIRS 062M with the value of 0.45. From the results of CI and HI, it is concluded that the calibration curve of CT-number does not significantly differ with Schneider's calibrated curve, and inverse planning gives a better result than forward planning.

  11. Comparison of OpenFOAM and EllipSys3D for neutral atmospheric flow over complex terrain

    OpenAIRE

    Cavar, Dalibor; Réthoré, Pierre-Elouan; Bechmann, Andreas; Sørensen, Niels N.; Martinez, Benjamin, Jr; Zahle, Frederik; Berg, Jacob; Kelly, Mark C.

    2016-01-01

    The flow solvers OpenFOAM and EllipSys3D are compared in the case of neutral atmospheric flow over terrain using the test cases of Askervein and Bolund hills. Both solvers are run using the steady-state Reynolds-averaged Navier–Stokes k– turbulence model. One of the main modeling differences between the two solvers is the wall-function approach. The Open-FOAM v.1.7.1 uses a Nikuradse’s sand roughness model, while EllipSys3D uses a model based on the atmosphericroughness length. It is found th...

  12. RELAP5-3D Developmental Assessment: Comparison of Version 4.2.1i on Linux and Windows

    Energy Technology Data Exchange (ETDEWEB)

    Paul D. Bayless

    2014-06-01

    Figures have been generated comparing the parameters used in the developmental assessment of the RELAP5-3D code, version 4.2i, compiled on Linux and Windows platforms. The figures, which are the same as those used in Volume III of the RELAP5-3D code manual, compare calculations using the semi-implicit solution scheme with available experiment data. These figures provide a quick, visual indication of how the code predictions differ between the Linux and Windows versions.

  13. Description of premixing with the MC3D code including molten jet behavior modeling. Comparison with FARO experimental results

    Energy Technology Data Exchange (ETDEWEB)

    Berthoud, G.; Crecy, F. de; Meignen, R.; Valette, M. [CEA-G, DRN/DTP/SMTH, 17 rue des Martyrs, 38054 Grenoble Cedex 9 (France)

    1998-01-01

    The premixing phase of a molten fuel-coolant interaction is studied by the way of mechanistic multidimensional calculation. Beside water and steam, corium droplet flow and continuous corium jet flow are calculated independent. The 4-field MC3D code and a detailed hot jet fragmentation model are presented. MC3D calculations are compared to the FARO L14 experiment results and are found to give satisfactory results; heat transfer and jet fragmentation models are still to be improved to predict better final debris size values. (author)

  14. A dosimetric comparison of 3D conformal vs intensity modulated vs volumetric arc radiation therapy for muscle invasive bladder cancer

    International Nuclear Information System (INIS)

    To compare 3 Dimensional Conformal radiotherapy (3D-CRT) with Intensity Modulated Radiotherapy (IMRT) with Volumetric-Modulated Arc Therapy (VMAT) for bladder cancer. Radiotherapy plans for 15 patients with T2-T4N0M0 bladder cancer were prospectively developed for 3-DCRT, IMRT and VMAT using Varian Eclipse planning system. The same radiation therapist carried out all planning and the same clinical dosimetric constraints were used. 10 of the patients with well localised tumours had a simultaneous infield boost (SIB) of the primary tumour planned for both IMRT and VMAT. Tumour control probabilities and normal tissue complication probabilities were calculated. Mean planning time for 3D-CRT, IMRT and VMAT was 30.0, 49.3, and 141.0 minutes respectively. The mean PTV conformity (CI) index for 3D-CRT was 1.32, for IMRT 1.05, and for VMAT 1.05. The PTV Homogeneity (HI) index was 0.080 for 3D-CRT, 0.073 for IMRT and 0.086 for VMAT. Tumour control and normal tissue complication probabilities were similar for 3D-CRT, IMRT and VMAT. The mean monitor units were 267 (range 250–293) for 3D-CRT; 824 (range 641–1083) for IMRT; and 403 (range 333–489) for VMAT (P < 0.05). Average treatment delivery time were 2:25min (range 2:01–3:09) for 3D-CRT; 4:39 (range 3:41–6:40) for IMRT; and 1:14 (range 1:13–1:14) for VMAT. In selected patients, the SIB did not result in a higher dose to small bowel or rectum. VMAT is associated with similar dosimetric advantages as IMRT over 3D-CRT for muscle invasive bladder cancer. VMAT is associated with faster delivery times and less number of mean monitor units than IMRT. SIB is feasible in selected patients with localized tumours

  15. RELAP5-3D Developmental Assessment. Comparison of Version 4.3.4i on Linux and Windows

    Energy Technology Data Exchange (ETDEWEB)

    Bayless, Paul David [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-10-01

    Figures have been generated comparing the parameters used in the developmental assessment of the RELAP5-3D code, version 4.3i, compiled on Linux and Windows platforms. The figures, which are the same as those used in Volume III of the RELAP5-3D code manual, compare calculations using the semi-implicit solution scheme with available experiment data. These figures provide a quick, visual indication of how the code predictions differ between the Linux and Windows versions.

  16. Comparison of 3D and 4D Monte Carlo optimization in robotic tracking stereotactic body radiotherapy of lung cancer

    Energy Technology Data Exchange (ETDEWEB)

    Chan, Mark K.H. [Tuen Mun Hospital, Department of Clinical Oncology, Hong Kong (S.A.R) (China); Werner, Rene [The University Medical Center Hamburg-Eppendorf, Department of Computational Neuroscience, Hamburg (Germany); Ayadi, Miriam [Leon Berard Cancer Center, Department of Radiation Oncology, Lyon (France); Blanck, Oliver [University Clinic of Schleswig-Holstein, Department of Radiation Oncology, Luebeck (Germany); CyberKnife Center Northern Germany, Guestrow (Germany)

    2014-09-20

    To investigate the adequacy of three-dimensional (3D) Monte Carlo (MC) optimization (3DMCO) and the potential of four-dimensional (4D) dose renormalization (4DMC{sub renorm}) and optimization (4DMCO) for CyberKnife (Accuray Inc., Sunnyvale, CA) radiotherapy planning in lung cancer. For 20 lung tumors, 3DMCO and 4DMCO plans were generated with planning target volume (PTV{sub 5} {sub mm}) = gross tumor volume (GTV) plus 5 mm, assuming 3 mm for tracking errors (PTV{sub 3} {sub mm}) and 2 mm for residual organ deformations. Three fractions of 60 Gy were prescribed to ≥ 95 % of the PTV{sub 5} {sub mm}. Each 3DMCO plan was recalculated by 4D MC dose calculation (4DMC{sub recal}) to assess the dosimetric impact of organ deformations. The 4DMC{sub recal} plans were renormalized (4DMC{sub renorm}) to 95 % dose coverage of the PTV{sub 5} {sub mm} for comparisons with the 4DMCO plans. A 3DMCO plan was considered adequate if the 4DMC{sub recal} plan showed ≥ 95 % of the PTV{sub 3} {sub mm} receiving 60 Gy and doses to other organs at risk (OARs) were below the limits. In seven lesions, 3DMCO was inadequate, providing < 95 % dose coverage to the PTV{sub 3} {sub mm}. Comparison of 4DMC{sub recal} and 3DMCO plans showed that organ deformations resulted in lower OAR doses. Renormalizing the 4DMC{sub recal} plans could produce OAR doses higher than the tolerances in some 4DMC{sub renorm} plans. Dose conformity of the 4DMC{sub renorm} plans was inferior to that of the 3DMCO and 4DMCO plans. The 4DMCO plans did not always achieve OAR dose reductions compared to 3DMCO and 4DMC{sub renorm} plans. This study indicates that 3DMCO with 2 mm margins for organ deformations may be inadequate for Cyberknife-based lung stereotactic body radiotherapy (SBRT). Renormalizing the 4DMC{sub recal} plans could produce degraded dose conformity and increased OAR doses; 4DMCO can resolve this problem. (orig.) [German] Untersucht wurde die Angemessenheit einer dreidimensionalen (3-D) Monte

  17. On the comparison of visual discomfort generated by S3D and 2D content based on eye-tracking features

    Science.gov (United States)

    Iatsun, Iana; Larabi, Mohamed-Chaker; Fernandez-Maloigne, Christine

    2014-03-01

    The changing of TV systems from 2D to 3D mode is the next expected step in the telecommunication world. Some works have already been done to perform this progress technically, but interaction of the third dimension with humans is not yet clear. Previously, it was found that any increased load of visual system can create visual fatigue, like prolonged TV watching, computer work or video gaming. But watching S3D can cause another nature of visual fatigue, since all S3D technologies creates illusion of the third dimension based on characteristics of binocular vision. In this work we propose to evaluate and compare the visual fatigue from watching 2D and S3D content. This work shows the difference in accumulation of visual fatigue and its assessment for two types of content. In order to perform this comparison eye-tracking experiments using six commercially available movies were conducted. Healthy naive participants took part into the test and gave their answers feeling the subjective evaluation. It was found that watching stereo 3D content induce stronger feeling of visual fatigue than conventional 2D, and the nature of video has an important effect on its increase. Visual characteristics obtained by using eye-tracking were investigated regarding their relation with visual fatigue.

  18. Comparison Between 2-D and 3-D Stiffness Matrix Model Simulation of Sasw Inversion for Pavement Structure

    Directory of Open Access Journals (Sweden)

    Sri Atmaja P. Rosidi

    2007-01-01

    Full Text Available The Spectral Analysis of Surface Wave (SASW method is a non-destructive in situ seismic technique used to assess and evaluate the material stiffness (dynamic elastic modulus and thickness of pavement layers at low strains. These values can be used analytically to calculate load capacities in order to predict the performance of pavement system. The SASW method is based on the dispersion phenomena of Rayleigh waves in layered media. In order to get the actual shear wave velocities, 2-D and 3-D models are used in the simulation of the inversion process for best fitting between theoretical and empirical dispersion curves. The objective of this study is to simulate and compare the 2-D and 3-D model of SASW analysis in the construction of the theoretical dispersion curve for pavement structure evaluation. The result showed that the dispersion curve from the 3-D model was similar with the dispersion curve of the actual pavement profile compared to the 2-D model. The wave velocity profiles also showed that the 3-D model used in the SASW analysis is able to detect all the distinct layers of flexible pavement units.

  19. Comparison and Extension of Existing 3D Propagation Models with Real-World Effects Based on Ray-tracing

    DEFF Research Database (Denmark)

    Kifle, Dereje W.; Gimenez, Lucas Chavarria; Wegmann, Bernhard;

    2014-01-01

    far, by changing antenna beam orientation like antenna tilting or when users are distributed in the third dimension (height) in multi-floor scenarios. Ray tracing based generated propagation maps that show the realistic propagation effect are used as 3D real world reference for investigation and model...

  20. Comparison and evaluation of datasets for off-angle iris recognition

    Science.gov (United States)

    Kurtuncu, Osman M.; Cerme, Gamze N.; Karakaya, Mahmut

    2016-05-01

    In this paper, we investigated the publicly available iris recognition datasets and their data capture procedures in order to determine if they are suitable for the stand-off iris recognition research. Majority of the iris recognition datasets include only frontal iris images. Even if a few datasets include off-angle iris images, the frontal and off-angle iris images are not captured at the same time. The comparison of the frontal and off-angle iris images shows not only differences in the gaze angle but also change in pupil dilation and accommodation as well. In order to isolate the effect of the gaze angle from other challenging issues including dilation and accommodation, the frontal and off-angle iris images are supposed to be captured at the same time by using two different cameras. Therefore, we developed an iris image acquisition platform by using two cameras in this work where one camera captures frontal iris image and the other one captures iris images from off-angle. Based on the comparison of Hamming distance between frontal and off-angle iris images captured with the two-camera- setup and one-camera-setup, we observed that Hamming distance in two-camera-setup is less than one-camera-setup ranging from 0.05 to 0.001. These results show that in order to have accurate results in the off-angle iris recognition research, two-camera-setup is necessary in order to distinguish the challenging issues from each other.

  1. Analysis of acetabular version in the native hip: comparison between 2D axial CT and 3D CT measurements

    Energy Technology Data Exchange (ETDEWEB)

    Dandachli, Wael [Department of Orthopaedic Surgery, Imperial College London Hospitals, London (United Kingdom); Ul Islam, Saif; Tippett, Richard; Hall-Craggs, Margaret A.; Witt, Johan D. [University College London Hospitals, London (United Kingdom)

    2011-07-15

    To compare two-dimensional (2D) axial with three-dimensional (3D) computerized tomography (CT) measurements of acetabular version in native hips. CT scans of 34 hips in 17 consecutive patients being investigated for femoroacetabular impingement were analyzed. Acetabular version was measured using 2D CT at two different axial levels, one cranial (slice 2) and the other at the equator (slice 3). The measurements were repeated after correction for pelvic tilt. The results were compared to the measurements of anatomical version obtained using a 3D CT method that automatically corrects for pelvic tilt. The mean acetabular version using the 3D CT method was 15.7 (SD 6.9 ). The mean version using slice 2 was 9.3 (SD 6.5 ) before correction for pelvic tilt and 15.7 (SD 8.0 ) after the correction. The mean version using slice 3 was 16.4 (SD 4.2 ) before tilt correction and 19.0 (SD 5.0 ) after the correction. In relation to the 3D method, the intraclass correlation coefficient (ICC) was 0.58 for the uncorrected and 0.93 for the corrected slice 2 method. For the uncorrected and corrected slice 3 methods, the ICC was 0.64 and 0.89, respectively. The 2D axial methods produced variable results. The results that correlated best with the 3D method were those of the cranial slice (slice 2) after correction for pelvic tilt. Interpretation of 2D axial CT measurements of acetabular version should be done with caution. The level at which the measurement is done and the presence of pelvic tilt appear to be significant factors. (orig.)

  2. Investigation of the quantitative accuracy of 3D iterative reconstruction algorithms in comparison to filtered back projection method: a phantom study

    Science.gov (United States)

    Abuhadi, Nouf; Bradley, David; Katarey, Dev; Podolyak, Zsolt; Sassi, Salem

    2014-03-01

    Introduction: Single-Photon Emission Computed Tomography (SPECT) is used to measure and quantify radiopharmaceutical distribution within the body. The accuracy of quantification depends on acquisition parameters and reconstruction algorithms. Until recently, most SPECT images were constructed using Filtered Back Projection techniques with no attenuation or scatter corrections. The introduction of 3-D Iterative Reconstruction algorithms with the availability of both computed tomography (CT)-based attenuation correction and scatter correction may provide for more accurate measurement of radiotracer bio-distribution. The effect of attenuation and scatter corrections on accuracy of SPECT measurements is well researched. It has been suggested that the combination of CT-based attenuation correction and scatter correction can allow for more accurate quantification of radiopharmaceutical distribution in SPECT studies (Bushberg et al., 2012). However, The effect of respiratory induced cardiac motion on SPECT images acquired using higher resolution algorithms such 3-D iterative reconstruction with attenuation and scatter corrections has not been investigated. Aims: To investigate the quantitative accuracy of 3D iterative reconstruction algorithms in comparison to filtered back projection (FBP) methods implemented on cardiac SPECT/CT imaging with and without CT-attenuation and scatter corrections. Also to investigate the effects of respiratory induced cardiac motion on myocardium perfusion quantification. Lastly, to present a comparison of spatial resolution for FBP and ordered subset expectation maximization (OSEM) Flash 3D together with and without respiratory induced motion, and with and without attenuation and scatter correction. Methods: This study was performed on a Siemens Symbia T16 SPECT/CT system using clinical acquisition protocols. Respiratory induced cardiac motion was simulated by imaging a cardiac phantom insert whilst moving it using a respiratory motion motor

  3. Comparison of OpenFOAM and EllipSys3D for neutral atmospheric flow over complex terrain

    DEFF Research Database (Denmark)

    Cavar, Dalibor; Réthoré, Pierre-Elouan; Bechmann, Andreas;

    2016-01-01

    been tested and compared to the results of OpenFOAM v.1.7.1 and EllipSys3D. The numerical results obtained using the same wall-modeling approach in both EllipSys3D and Open-FOAM v.2.1.1 proved to be almost identical. Two meshing strategies are investigated using HypGrid and SnappyHexMesh. The...... performance of Open-FOAM on SnappyHexMesh-based low-aspect-ratio unstructured meshes is found to be almost an order of magnitude faster than on HypGrid-based structured and high-aspect-ratio meshes. However, proper control of boundary layer resolution is found to be very difficult when the SnappyHexMesh tool...

  4. Comparison of toxicity after IMRT and 3D-conformal radiotherapy for patients with pancreatic cancer – A systematic review

    International Nuclear Information System (INIS)

    Summary: IMRT has been suggested to reduce treatment-related toxicity in pancreatic cancer. We attempted to identify all IMRT-studies indexed in PubMed/Medline, comparing them with recent 3D-CRT trials. The predominant treatment-related toxicities, namely nausea/vomiting, diarrhoea and late GI toxicity, are significantly reduced with IMRT while there was no apparent difference for outcome measures

  5. Analysis of slicing-tools for fused deposition modeling 3D-printers and comparison of different printers

    OpenAIRE

    Bugdayci, Halil; Grunert, Jonas; Keller, Fabian

    2014-01-01

    The term 3D printer refers to machines capable of additive manufacturing, which means creating objects by sequential layering. Additive manufactured objects can be used in the whole product life cycle, from rapid prototyping through small series production up to full production. In addition to the hardware itself it is necessary to use tools and applications like "slicing tools", post-production adjustments, process models and testing and verifying scenarios. With slicing tools it is poss...

  6. Comparison of 3D cube FLAIR with 2D FLAIR for multiple sclerosis imaging at 3 tesla

    Energy Technology Data Exchange (ETDEWEB)

    Patzig, M.; Brueckmann, H.; Fesl, G. [Muenchen Univ. (Germany). Dept. of Neuroradiology; Burke, M. [GE Healthcare, Solingen (Germany)

    2014-05-15

    Purpose: Three-dimensional (3 D) MRI sequences allow improved spatial resolution with good signal and contrast properties as well as multiplanar reconstruction. We sought to compare Cube, a 3 D FLAIR sequence, to a standard 2 D FLAIR sequence in multiple sclerosis (MS) imaging. Materials and Methods: Examinations were performed in the clinical routine on a 3.0 Tesla scanner. 12 patients with definite MS were included. Lesions with MS-typical properties on the images of Cube FLAIR and 2 D FLAIR sequences were counted and allocated to different brain regions. Signal-to-noise ratios (SNR) and contrast-to-noise ratios (CNR) were calculated. Results: With 384 the overall number of lesions found with Cube FLAIR was significantly higher than with 2 D FLAIR (N = 221). The difference was mostly accounted for by supratentorial lesions (N = 372 vs. N = 216) while the infratentorial lesion counts were low in both sequences. SNRs and CNRs were significantly higher in CUBE FLAIR with the exception of the CNR of lesion to gray matter, which was not significantly different. Conclusion: Cube FLAIR showed a higher sensitivity for MS lesions compared to a 2 D FLAIR sequence. 3 D FLAIR might replace 2 D FLAIR sequences in MS imaging in the future. (orig.)

  7. Comparison of 3D cube FLAIR with 2D FLAIR for multiple sclerosis imaging at 3 tesla

    International Nuclear Information System (INIS)

    Purpose: Three-dimensional (3 D) MRI sequences allow improved spatial resolution with good signal and contrast properties as well as multiplanar reconstruction. We sought to compare Cube, a 3 D FLAIR sequence, to a standard 2 D FLAIR sequence in multiple sclerosis (MS) imaging. Materials and Methods: Examinations were performed in the clinical routine on a 3.0 Tesla scanner. 12 patients with definite MS were included. Lesions with MS-typical properties on the images of Cube FLAIR and 2 D FLAIR sequences were counted and allocated to different brain regions. Signal-to-noise ratios (SNR) and contrast-to-noise ratios (CNR) were calculated. Results: With 384 the overall number of lesions found with Cube FLAIR was significantly higher than with 2 D FLAIR (N = 221). The difference was mostly accounted for by supratentorial lesions (N = 372 vs. N = 216) while the infratentorial lesion counts were low in both sequences. SNRs and CNRs were significantly higher in CUBE FLAIR with the exception of the CNR of lesion to gray matter, which was not significantly different. Conclusion: Cube FLAIR showed a higher sensitivity for MS lesions compared to a 2 D FLAIR sequence. 3 D FLAIR might replace 2 D FLAIR sequences in MS imaging in the future. (orig.)

  8. Evaluation of the User Strategy on 2d and 3d City Maps Based on Novel Scanpath Comparison Method and Graph Visualization

    Science.gov (United States)

    Dolezalova, J.; Popelka, S.

    2016-06-01

    The paper is dealing with scanpath comparison of eye-tracking data recorded during case study focused on the evaluation of 2D and 3D city maps. The experiment contained screenshots from three map portals. Two types of maps were used - standard map and 3D visualization. Respondents' task was to find particular point symbol on the map as fast as possible. Scanpath comparison is one group of the eye-tracking data analyses methods used for revealing the strategy of the respondents. In cartographic studies, the most commonly used application for scanpath comparison is eyePatterns that output is hierarchical clustering and a tree graph representing the relationships between analysed sequences. During an analysis of the algorithm generating a tree graph, it was found that the outputs do not correspond to the reality. We proceeded to the creation of a new tool called ScanGraph. This tool uses visualization of cliques in simple graphs and is freely available at www.eyetracking.upol.cz/scangraph. Results of the study proved the functionality of the tool and its suitability for analyses of different strategies of map readers. Based on the results of the tool, similar scanpaths were selected, and groups of respondents with similar strategies were identified. With this knowledge, it is possible to analyse the relationship between belonging to the group with similar strategy and data gathered from the questionnaire (age, sex, cartographic knowledge, etc.) or type of stimuli (2D, 3D map).

  9. Evaluation of the User Strategy on 2d and 3d City Maps Based on Novel Scanpath Comparison Method and Graph Visualization

    Science.gov (United States)

    Dolezalova, J.; Popelka, S.

    2016-06-01

    The paper is dealing with scanpath comparison of eye-tracking data recorded during case study focused on the evaluation of 2D and 3D city maps. The experiment contained screenshots from three map portals. Two types of maps were used - standard map and 3D visualization. Respondents' task was to find particular point symbol on the map as fast as possible. Scanpath comparison is one group of the eye-tracking data analyses methods used for revealing the strategy of the respondents. In cartographic studies, the most commonly used application for scanpath comparison is eyePatterns that output is hierarchical clustering and a tree graph representing the relationships between analysed sequences. During an analysis of the algorithm generating a tree graph, it was found that the outputs do not correspond to the reality. We proceeded to the creation of a new tool called ScanGraph. This tool uses visualization of cliques in simple graphs and is freely available at www.eyetracking.upol.cz/scangraph"target="_blank">www.eyetracking.upol.cz/scangraph. Results of the study proved the functionality of the tool and its suitability for analyses of different strategies of map readers. Based on the results of the tool, similar scanpaths were selected, and groups of respondents with similar strategies were identified. With this knowledge, it is possible to analyse the relationship between belonging to the group with similar strategy and data gathered from the questionnaire (age, sex, cartographic knowledge, etc.) or type of stimuli (2D, 3D map).

  10. Comparison of Shade Match Compatibility between Vitapan Classical and 3D Master Shade Guide Systems by Dental Students in Tabriz Faculty of Dentistry

    Directory of Open Access Journals (Sweden)

    Ramin Negahdari

    2016-01-01

    Full Text Available Background and Aims: Dentists perform color-match process during indirect and direct restorations. Color research has shown that shade guides do not always match the color of natural teeth. Moreover, visual evaluation of dental colors has been found to be inconsistent and unreliable. In fact, it has always been important when using different shade guides. Our purpose in this study was to compare shade selection using two shade guide systems of Vitapan Classical and 3D Master by dental students of Tabriz University of Medical Sciences. Materials and methods: In this analytical, cross-sectional descriptive study, 20 male and 20 female senior dental students with a little clinical experience in working with shade guides were selected. Each student used two shade guides (Vitapan Classical and 3D Master separately for shade matching. Shade selection was randomly repeated one week later by the same protocol. T-test was used to compare repeatability of color matching (α=0.05. Comparison of the repeatability percentage was done with t-test. Results: Comparison of repeatability percentages of shade matching irrespective of gender showed that percentage of repeatability of shade match in 3D Master system was significantly high (P=0.00. In addition comparison of repeatability means of shade match with different shade guide systems on the basis of gender showed no significant differences (P=0.68. Conclusion: In general, the repeatability percentages of shade matching in 3D Master system was high and shade matching in females with this system was not different than males. Key words: Color vision; indirect restorations; dental students

  11. High-dose radiotherapy in inoperable nonsmall cell lung cancer: comparison of volumetric modulated arc therapy, dynamic IMRT and 3D conformal radiotherapy.

    Science.gov (United States)

    Bree, Ingrid de; van Hinsberg, Mariëlle G E; van Veelen, Lieneke R

    2012-01-01

    Conformal 3D radiotherapy (3D-CRT) combined with chemotherapy for inoperable non-small cell lung cancer (NSCLC) to the preferable high dose is often not achievable because of dose-limiting organs. This reduces the probability of regional tumor control. Therefore, the surplus value of using intensity-modulated radiation therapy (IMRT) techniques, specifically volumetric modulated arc therapy (RapidArc [RA]) and dynamic IMRT (d-IMRT) has been investigated. RA and d-IMRT plans were compared with 3D-CRT treatment plans for 20 patients eligible for concurrent high-dose chemoradiotherapy, in whom a dose of 60 Gy was not achievable. Comparison of dose delivery in the target volume and organs at risk was carried out by evaluating 3D dose distributions and dose-volume histograms. Quality of the dose distribution was assessed using the inhomogeneity and conformity index. For most patients, a higher dose to the target volume can be delivered using RA or d-IMRT; in 15% of the patients a dose ≥60 Gy was possible. Both IMRT techniques result in a better conformity of the dose (p < 0.001). There are no significant differences in homogeneity of dose in the target volume. IMRT techniques for NSCLC patients allow higher dose to the target volume, thus improving regional tumor control. PMID:22459649

  12. High-dose radiotherapy in inoperable nonsmall cell lung cancer: Comparison of volumetric modulated arc therapy, dynamic IMRT and 3D conformal radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Bree, Ingrid de, E-mail: i.de.bree@zrti.nl [Zeeuws Radiotherapeutisch Instituut, Vlissingen (Netherlands); Hinsberg, Marieelle G.E. van; Veelen, Lieneke R. van [Zeeuws Radiotherapeutisch Instituut, Vlissingen (Netherlands)

    2012-01-01

    Conformal 3D radiotherapy (3D-CRT) combined with chemotherapy for inoperable non-small cell lung cancer (NSCLC) to the preferable high dose is often not achievable because of dose-limiting organs. This reduces the probability of regional tumor control. Therefore, the surplus value of using intensity-modulated radiation therapy (IMRT) techniques, specifically volumetric modulated arc therapy (RapidArc [RA]) and dynamic IMRT (d-IMRT) has been investigated. RA and d-IMRT plans were compared with 3D-CRT treatment plans for 20 patients eligible for concurrent high-dose chemoradiotherapy, in whom a dose of 60 Gy was not achievable. Comparison of dose delivery in the target volume and organs at risk was carried out by evaluating 3D dose distributions and dose-volume histograms. Quality of the dose distribution was assessed using the inhomogeneity and conformity index. For most patients, a higher dose to the target volume can be delivered using RA or d-IMRT; in 15% of the patients a dose {>=}60 Gy was possible. Both IMRT techniques result in a better conformity of the dose (p < 0.001). There are no significant differences in homogeneity of dose in the target volume. IMRT techniques for NSCLC patients allow higher dose to the target volume, thus improving regional tumor control.

  13. High-dose radiotherapy in inoperable nonsmall cell lung cancer: Comparison of volumetric modulated arc therapy, dynamic IMRT and 3D conformal radiotherapy

    International Nuclear Information System (INIS)

    Conformal 3D radiotherapy (3D-CRT) combined with chemotherapy for inoperable non–small cell lung cancer (NSCLC) to the preferable high dose is often not achievable because of dose-limiting organs. This reduces the probability of regional tumor control. Therefore, the surplus value of using intensity-modulated radiation therapy (IMRT) techniques, specifically volumetric modulated arc therapy (RapidArc [RA]) and dynamic IMRT (d-IMRT) has been investigated. RA and d-IMRT plans were compared with 3D-CRT treatment plans for 20 patients eligible for concurrent high-dose chemoradiotherapy, in whom a dose of 60 Gy was not achievable. Comparison of dose delivery in the target volume and organs at risk was carried out by evaluating 3D dose distributions and dose-volume histograms. Quality of the dose distribution was assessed using the inhomogeneity and conformity index. For most patients, a higher dose to the target volume can be delivered using RA or d-IMRT; in 15% of the patients a dose ≥60 Gy was possible. Both IMRT techniques result in a better conformity of the dose (p < 0.001). There are no significant differences in homogeneity of dose in the target volume. IMRT techniques for NSCLC patients allow higher dose to the target volume, thus improving regional tumor control.

  14. The Correlation Between the GFR and the Renal Dimensions in Glomerulopathy Patients: Comparison of 2D and 3D Ultrasound

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Gyoung Min [Seoul National University Hospital, Seoul (Korea, Republic of); Lee, Hak Jong; Hwang, Sung Il; Chin, Ho Jun [Seoul National University Bundang Hospital, Seongnam (Korea, Republic of)

    2011-03-15

    We wanted to determine the correlation between the renal length as measured on two dimensional (2D) ultrasonography (US) and the renal parenchymal volume as measured with a new three-dimensional (3D) volume probe ultrasound system. We also wanted to determine the correlation between the renal length or renal parenchymal volume and the glomerular filtration rate (GFR) in patients with glomerulopathy. From July 2007 to December 2007, 26 patients who were pathologically confirmed to have glomerulopathy by biopsy were enrolled. Renal length was measured with 2D US and the renal parenchymal volume was measured with 3D US just prior to biopsy. The GFR was obtained from the electronic medical records. Pearson's correlation coefficients were used to analyze the correlation between the renal length and the renal parenchymal volume, the correlation between the renal length and the GFR and the correlation between the renal parenchymal volume and the GFR. The renal length and the renal parenchymal volume showed strong positive correlation (r = 0.850, p = 0.0001). The correlation coefficient between the renal length and the GFR was 0.623 (p = 0.0007) and the correlation coefficient between the renal volume and the GFR was 0.590 (p = 0.0015). Both the renal length and renal parenchymal volume showed apparently positive correlations with the GFR in glomerulopathy patients. The renal length showed strong positive correlations with the renal parenchymal volume. Both the renal length and the renal parenchymal volume showed apparently positive correlations with the GFR in glomerulopathy patients. In glomerulopathy patients, the renal dimensions measured by ultrasound can reflect the status of the GFR, and the measurement of the 2D renal length could be sufficient for follow up. Further studies are needed to evaluate the role of 3D US for assessing patients with renal disease

  15. SMEI direct, 3-D-reconstruction sky maps, and volumetric analyses, and their comparison with SOHO and STEREO observations

    Directory of Open Access Journals (Sweden)

    B. V. Jackson

    2009-11-01

    Full Text Available In this paper we present the results of the analysis of the late January 2007 Coronal Mass Ejection (CME events recorded by the Solar Mass Ejection Imager (SMEI, the Solar TErrestrial RElations Observatory (STEREO, and the SOlar and Heliospheric Observatory (SOHO spacecraft. This period occurs when the two STEREO spacecraft views are from close to Earth, and thus the views from both SMEI and the STEREO outer Heliospheric Imagers (HI-2s coincide. Three-dimensional (3-D analyses derived from SMEI data show many CMEs that have also been studied by others using short-term image subtractions (image-differencing techniques. During this interval we map several CME structures that are observed in both SMEI and the STEREO-A HI instruments. SMEI brightness analyses provided by short-term image subtractions ("difference images" and, alternatively, subtractions of a mean-brightness fit over a long-time duration, both show the extents of the CMEs travelling outward above the East limb that erupted from the Sun on 24 and 25 January 2007. The SMEI 3-D-reconstructions not only enhance distinct features within the CME events, but also reconcile difference-imaging results with those where a long-term base has been removed. In the January 2007 example the structure as mapped by CME difference images traces the sharp intensity gradients at the front of the CMEs; generally brighter ejected material follows behind the location of the CME front, but shows poorly in these because of its larger angular extent. Using the long-duration background removal enables SMEI's 3-D analysis to determine a mass for this CME sequence North of the ecliptic.

  16. A dosimetric comparison of 3D-CRT, IMRT, and static tomotherapy with an SIB for large and small breast volumes

    Energy Technology Data Exchange (ETDEWEB)

    Michalski, Andrea [Department of Health Science (MRS), The University of Sydney, Lidcombe, New South Wales (Australia); Central Coast Cancer Centre, Gosford Hospital, Gosford, New South Wales (Australia); Atyeo, John, E-mail: john.atyeo@sydney.edu.au [Department of Health Science (MRS), The University of Sydney, Lidcombe, New South Wales (Australia); Cox, Jennifer [Department of Health Science (MRS), The University of Sydney, Lidcombe, New South Wales (Australia); Department of Radiation Oncology, Royal North Shore Hospital, St Leonards, New South Wales (Australia); Rinks, Marianne [Department of Health Science (MRS), The University of Sydney, Lidcombe, New South Wales (Australia); Radiation Oncology, Cancer Services, Illawarra Shoalhaven Local Health District, Wollongong, New South Wales (Australia); Morgia, Marita; Lamoury, Gillian [Department of Radiation Oncology, Royal North Shore Hospital, St Leonards, New South Wales (Australia)

    2014-07-01

    Radiation therapy to the breast is a complex task, with many different techniques that can be employed to ensure adequate dose target coverage while minimizing doses to the organs at risk. This study compares the dose planning outcomes of 3 radiation treatment modalities, 3 dimensional conformal radiation therapy (3D-CRT), intensity-modulated radiation therapy (IMRT), and static tomotherapy, for left-sided whole-breast radiation treatment with a simultaneous integrated boost (SIB). Overall, 20 patients with left-sided breast cancer were separated into 2 cohorts, small and large, based on breast volume. Dose plans were produced for each patient using 3D-CRT, IMRT, and static tomotherapy. All patients were prescribed a dose of 45 Gy in 20 fractions to the breast with an SIB of 56 Gy in 20 fractions to the tumor bed and normalized so that D{sub 98%} > 95% of the prescription dose. Dosimetric comparisons were made between the 3 modalities and the interaction of patient size. All 3 modalities offered adequate planning target volume (PTV) coverage with D{sub 98%} > 95% and D{sub 2%} < 107%. Static tomotherapy offered significantly improved (p = 0.006) dose homogeneity to the PTV{sub boost} {sub eval} (0.079 ± 0.011) and breast minus the SIB volume (Breast{sub SIB}) (p < 0.001, 0.15 ± 0.03) compared with the PTV{sub boost} {sub eval} (0.085 ± 0.008, 0.088 ± 0.12) and Breast{sub SIB} (0.22 ± 0.05, 0.23 ± 0.03) for IMRT and 3D-CRT, respectively. Static tomotherapy also offered statistically significant reductions (p < 0.001) in doses to the ipsilateral lung mean dose of 6.79 ± 2.11 Gy compared with 7.75 ± 2.54 Gy and 8.29 ± 2.76 Gy for IMRT and 3D-CRT, respectively, and significantly (p < 0.001) reduced heart doses (mean = 2.83 ± 1.26 Gy) compared to both IMRT and 3D-CRT (mean = 3.70 ± 1.44 Gy and 3.91 ± 1.58 Gy). Static tomotherapy is the dosimetrically superior modality for the whole breast with an SIB compared with IMRT and 3D-CRT. IMRT is superior to 3D

  17. A comparison study of atlas-based 3D cardiac MRI segmentation: global versus global and local transformations

    Science.gov (United States)

    Daryanani, Aditya; Dangi, Shusil; Ben-Zikri, Yehuda Kfir; Linte, Cristian A.

    2016-03-01

    Magnetic Resonance Imaging (MRI) is a standard-of-care imaging modality for cardiac function assessment and guidance of cardiac interventions thanks to its high image quality and lack of exposure to ionizing radiation. Cardiac health parameters such as left ventricular volume, ejection fraction, myocardial mass, thickness, and strain can be assessed by segmenting the heart from cardiac MRI images. Furthermore, the segmented pre-operative anatomical heart models can be used to precisely identify regions of interest to be treated during minimally invasive therapy. Hence, the use of accurate and computationally efficient segmentation techniques is critical, especially for intra-procedural guidance applications that rely on the peri-operative segmentation of subject-specific datasets without delaying the procedure workflow. Atlas-based segmentation incorporates prior knowledge of the anatomy of interest from expertly annotated image datasets. Typically, the ground truth atlas label is propagated to a test image using a combination of global and local registration. The high computational cost of non-rigid registration motivated us to obtain an initial segmentation using global transformations based on an atlas of the left ventricle from a population of patient MRI images and refine it using well developed technique based on graph cuts. Here we quantitatively compare the segmentations obtained from the global and global plus local atlases and refined using graph cut-based techniques with the expert segmentations according to several similarity metrics, including Dice correlation coefficient, Jaccard coefficient, Hausdorff distance, and Mean absolute distance error.

  18. Comparison of "warm and wet" and "cold and icy" scenarios for early Mars in a 3D climate model

    CERN Document Server

    Wordsworth, Robin D; Pierrehumbert, Raymond T; Forget, Francois; Head, James W

    2015-01-01

    We use a 3D general circulation model to compare the primitive Martian hydrological cycle in "warm and wet" and "cold and icy" scenarios. In the warm and wet scenario, an anomalously high solar flux or intense greenhouse warming artificially added to the climate model are required to maintain warm conditions and an ice-free northern ocean. Precipitation shows strong surface variations, with high rates around Hellas basin and west of Tharsis but low rates around Margaritifer Sinus (where the observed valley network drainage density is nonetheless high). In the cold and icy scenario, snow migration is a function of both obliquity and surface pressure, and limited episodic melting is possible through combinations of seasonal, volcanic and impact forcing. At surface pressures above those required to avoid atmospheric collapse (~0.5 bar) and moderate to high obliquity, snow is transported to the equatorial highland regions where the concentration of valley networks is highest. Snow accumulation in the Aeolis quadr...

  19. Plasma response measurements of external magnetic perturbations using electron cyclotron emission and comparisons to 3D ideal MHD equilibrium

    CERN Document Server

    Willensdorfer, M; Strumberger, E; Suttrop, W; Vanovac, B; Brida, D; Cavedon, M; Classen, I; Dunne, M; Fietz, S; Fischer, R; Kirk, A; Laggner, F M; Liu, Y Q; Odstrcil, T; Ryan, D A; Viezzer, E; Zohm, H; Luhmann, I C

    2016-01-01

    The plasma response from an external n = 2 magnetic perturbation field in ASDEX Upgrade has been measured using mainly electron cyclotron emission (ECE) diagnostics and a rigid rotating field. To interpret ECE and ECE-imaging (ECE-I) measurements accurately, forward modeling of the radiation transport has been combined with ray tracing. The measured data is compared to synthetic ECE data generated from a 3D ideal magnetohydrodynamics (MHD) equilibrium calculated by VMEC. The measured amplitudes of the helical displacement in the midplane are in reasonable agreement with the one from the synthetic VMEC diagnostics. Both exceed the vacuum field calculations and indicate the presence of an amplified kink response at the edge. Although the calculated magnetic structure of this edge kink peaks at poloidal mode numbers larger than the resonant components |m| > |nq|, the displacement measured by ECE-I is almost resonant |m| ~ |nq|. This is expected from ideal MHD in the proximity of rational surfaces. VMEC and MARS-...

  20. Relativistic radiation belt electron responses to GEM magnetic storms: Comparison of CRRES observations with 3-D VERB simulations

    Science.gov (United States)

    Kim, Kyung-Chan; Shprits, Yuri; Subbotin, Dmitriy; Ni, Binbin

    2012-08-01

    Understanding the dynamics of relativistic electron acceleration, loss, and transport in the Earth's radiation belt during magnetic storms is a challenging task. The U.S. National Science Foundation's Geospace Environment Modeling (GEM) has identified five magnetic storms for in-depth study that occurred during the second half of the Combined Release and Radiation Effects Satellite (CRRES) mission in the year 1991. In this study, we show the responses of relativistic radiation belt electrons to the magnetic storms by comparing the time-dependent 3-D Versatile Electron Radiation Belt (VERB) simulations with the CRRES MEA 1 MeV electron observations in order to investigate the relative roles of the competing effects of previously proposed scattering mechanisms at different storm phases, as well as to examine the extent to which the simulations can reproduce observations. The major scattering processes in our model are radial transport due to Ultra Low Frequency (ULF) electromagnetic fluctuations, pitch angle and energy diffusion including mixed diffusion by whistler mode chorus waves outside the plasmasphere, and pitch angle scattering by plasmaspheric hiss inside the plasmasphere. The 3-D VERB simulations show that during the storm main phase and early recovery phase the estimated plasmapause is located deep in the inner region, indicating that pitch angle scattering by chorus waves can be a dominant loss process in the outer belt. We have also confirmed the important role played by mixed energy-pitch angle diffusion by chorus waves, which tends to reduce the fluxes enhanced by local acceleration, resulting in comparable levels of computed and measured fluxes. However, we cannot reproduce the more pronounced flux dropout near the boundary of our simulations during the main phase, which indicates that non-adiabatic losses may extend toL-shells lower than our simulation boundary. We also provide a detailed description of simulations for each of the GEM storm events.

  1. Comparison of 3D point clouds obtained by photogrammetric UAVs and TLS to determine the attitude of dolerite outcrops discontinuities.

    Science.gov (United States)

    Duarte, João; Gonçalves, Gil; Duarte, Diogo; Figueiredo, Fernando; Mira, Maria

    2015-04-01

    Photogrammetric Unmanned Aerial Vehicles (UAVs) and Terrestrial Laser Scanners (TLS) are two emerging technologies that allows the production of dense 3D point clouds of the sensed topographic surfaces. Although image-based stereo-photogrammetric point clouds could not, in general, compete on geometric quality over TLS point clouds, fully automated mapping solutions based on ultra-light UAVs (or drones) have recently become commercially available at very reasonable accuracy and cost for engineering and geological applications. The purpose of this paper is to compare the two point clouds generated by these two technologies, in order to automatize the manual process tasks commonly used to detect and represent the attitude of discontinuities (Stereographic projection: Schmidt net - Equal area). To avoid the difficulties of access and guarantee the data survey security conditions, this fundamental step in all geological/geotechnical studies, applied to the extractive industry and engineering works, has to be replaced by a more expeditious and reliable methodology. This methodology will allow, in a more actuated clear way, give answers to the needs of evaluation of rock masses, by mapping the structures present, which will reduce considerably the associated risks (investment, structures dimensioning, security, etc.). A case study of a dolerite outcrop locate in the center of Portugal (the dolerite outcrop is situated in the volcanic complex of Serra de Todo-o-Mundo, Casais Gaiola, intruded in Jurassic sandstones) will be used to assess this methodology. The results obtained show that the 3D point cloud produced by the Photogrammetric UAV platform has the appropriate geometric quality for extracting the parameters that define the discontinuities of the dolerite outcrops. Although, they are comparable to the manual extracted parameters, their quality is inferior to parameters extracted from the TLS point cloud.

  2. Volumetric LiDAR scanning of a wind turbine wake and comparison with a 3D analytical wake model

    Science.gov (United States)

    Carbajo Fuertes, Fernando; Porté-Agel, Fernando

    2016-04-01

    A correct estimation of the future power production is of capital importance whenever the feasibility of a future wind farm is being studied. This power estimation relies mostly on three aspects: (1) a reliable measurement of the wind resource in the area, (2) a well-established power curve of the future wind turbines and, (3) an accurate characterization of the wake effects; the latter being arguably the most challenging one due to the complexity of the phenomenon and the lack of extensive full-scale data sets that could be used to validate analytical or numerical models. The current project addresses the problem of obtaining a volumetric description of a full-scale wake of a 2MW wind turbine in terms of velocity deficit and turbulence intensity using three scanning wind LiDARs and two sonic anemometers. The characterization of the upstream flow conditions is done by one scanning LiDAR and two sonic anemometers, which have been used to calculate incoming vertical profiles of horizontal wind speed, wind direction and an approximation to turbulence intensity, as well as the thermal stability of the atmospheric boundary layer. The characterization of the wake is done by two scanning LiDARs working simultaneously and pointing downstream from the base of the wind turbine. The direct LiDAR measurements in terms of radial wind speed can be corrected using the upstream conditions in order to provide good estimations of the horizontal wind speed at any point downstream of the wind turbine. All this data combined allow for the volumetric reconstruction of the wake in terms of velocity deficit as well as turbulence intensity. Finally, the predictions of a 3D analytical model [1] are compared to the 3D LiDAR measurements of the wind turbine. The model is derived by applying the laws of conservation of mass and momentum and assuming a Gaussian distribution for the velocity deficit in the wake. This model has already been validated using high resolution wind-tunnel measurements

  3. Comparison of circumferential pulmonary vein anatomy mapping guided by 3D mapping versus a mesh mapping catheter

    Institute of Scientific and Technical Information of China (English)

    Yi-Wen Yan a; Gang Chen a; Feng Zhang; Song-Wen Chen; Wei-Dong Meng; Shao-Wen Liu

    2015-01-01

    Objective: Catheter-based pulmonary vein isolation (PVI) is an established therapy for paroxysmal atrial fibrillation. The high-density mesh mapper (HDMM) guides circumferential PV-atrium isolation without the 3D electroanatomic mapping. This study aims to compare circumferential pulmonary vein (CPV) anatomy mapping between guiding by a 3D mapping system and the HDMM. Methods: Forty-four consecutive patients with paroxysmal atrial fibrillation were scheduled for a first procedure for PVI. A CPV ostial anatomy map guided by HDMM was set up in the CARTO system while the operator was blinded to the CARTO screen. Then CARTO-guided ipsilateral PV maps were obtained and PVI was performed. This established another set of CPV ostial anatomy maps. The differences between the two mapping images were compared and analyzed. Results: All 176 PVs in 44 patients could be mapped by both HDMM and CARTO. About 44.9%of the PV ostial anatomies were generally similar between the two different map images. The average point-to-point straight distance between the HDMM-guided map and the CARTO-guided map was 6.2 ± 1.4 mm. The area of the circumferential right PV (CRPV) in the HDMM map was larger than that in the CARTO map (P ¼ 0.013). After a mean follow-up of 18.3 ± 4.3 months (6e24 months), 72.7%of patients (32/44) were free of atrial arrhythmia without anti-arrhythmic drugs (AADs). Conclusion: Compared to the CARTO-guided CPV anatomy image, a highly similar figure could be achieved by mapping guided by the HDMM. (Clinical trial.gov number, ChiCTR-TNRC-11001390.) Copyright © 2015, Chinese Medical Association Production. Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

  4. 3D filling simulation of micro- and nanostructures in comparison to iso- and variothermal injection moulding trials

    Science.gov (United States)

    Rytka, C.; Lungershausen, J.; Kristiansen, P. M.; Neyer, A.

    2016-06-01

    Flow simulations can cut down both costs and time for the development of injection moulded polymer parts with functional surfaces used in life science and optical applications. We simulated the polymer melt flow into 3D micro- and nanostructures with Moldflow and Comsol and compared the results to real iso- and variothermal injection moulding trials below, at and above the transition temperature of the polymer. By adjusting the heat transfer coefficient and the transition temperature in the simulation it was possible to achieve good correlation with experimental findings at different processing conditions (mould temperature, injection velocity) for two polymers, namely polymethylmethacrylate and amorphous polyamide. The macroscopic model can be scaled down in volume and number of elements to save computational time for microstructure simulation and to enable first and foremost the nanostructure simulation, as long as local boundary conditions such as flow front speed are transferred correctly. The heat transfer boundary condition used in Moldflow was further evaluated in Comsol. Results showed that the heat transfer coefficient needs to be increased compared to macroscopic moulding in order to represent interfacial polymer/mould effects correctly. The transition temperature is most important in the packing phase for variothermal injection moulding.

  5. Comparison of the accuracy and precision of prostate localization with 2D-2D and 3D images

    DEFF Research Database (Denmark)

    Logadottir, Ashildur; Korreman, Stine; Munck af Rosenschöld, Per

    2011-01-01

    with prostate cancer were enrolled in the study. After each daily session, a set of 2D–2D and 3D images were acquired. The images isocenter was compared to reference images isocenter. For the set-up error analysis the systematic error, μ, and the set-up uncertainties, Σ and σ, were determined...... for the translational shift in the three directions, lat, lng and vrt. The set-up errors and uncertainties were calculated in the same way for rotations around the three axes, lat, lng and vrt. Results Set-up uncertainties were evaluated for four different set-up methods. The systematic error uncertainties were found...... to be in the range 0.38–1.14mm and for the random error 0.79–1.48mm. For rotations the uncertainties ranges were 0.38–1.59° and 0.91–2.18° for systematic and random uncertainties, respectively. Set-up uncertainties, using internal markers or prostate itself to position the target in the isocenter, were comparable...

  6. Radionuclide Transport and Uptake in Coastal Aquatic Ecosystems: A Comparison of a 3D Dynamic Model and a Compartment Model

    Energy Technology Data Exchange (ETDEWEB)

    Erichsen, Anders Christian; Moehlenberg, Flemming; Closter, Rikke Margrethe [Ecological and Environmental Dept., DHI, Hoersholm (Denmark)], E-mail: aer@dhigroup.com; Konovalenko, Lena; Bradshaw, Clare [The Dept. of Ecology, Environment and Plant Sciences, Stockholm Univ., Stockholm (Sweden); Kautsky, Ulrik [Swedish Nuclear Fuel and Waste Management Co. (SKB), Stockholm (Sweden); Aquilonius, Karin [Studsvik Nuclear AB, Nykoeping (Sweden)

    2013-05-15

    In safety assessments of underground radioactive waste repositories, understanding radionuclide fate in ecosystems is necessary to determine the impacts of potential releases. Here, the reliability of two mechanistic models (the compartmental K-model and the 3D dynamic D-model) in describing the fate of radionuclides released into a Baltic Sea bay is tested. Both are based on ecosystem models that simulate the cycling of organic matter (carbon). Radionuclide transfer is linked to adsorption and flows of carbon in food chains. Accumulation of Th-230, Cs-135, and Ni-59 in biological compartments was comparable between the models and site measurements despite differences in temporal resolution, biological state variables, and partition coefficients. Both models provided confidence limits for their modeled concentration ratios, an improvement over models that only estimate means. The D-model enables estimates at high spatio-temporal resolution. The K-model, being coarser but faster, allows estimates centuries ahead. Future developments could integrate the two models to take advantage of their respective strengths.

  7. Comparison of 3D Adaptive Remeshing Strategies for Finite Element Simulations of Electromagnetic Heating of Gold Nanoparticles

    Directory of Open Access Journals (Sweden)

    Fadhil Mezghani

    2015-01-01

    Full Text Available The optical properties of metallic nanoparticles are well known, but the study of their thermal behavior is in its infancy. However the local heating of surrounding medium, induced by illuminated nanostructures, opens the way to new sensors and devices. Consequently the accurate calculation of the electromagnetically induced heating of nanostructures is of interest. The proposed multiphysics problem cannot be directly solved with the classical refinement method of Comsol Multiphysics and a 3D adaptive remeshing process based on an a posteriori error estimator is used. In this paper the efficiency of three remeshing strategies for solving the multiphysics problem is compared. The first strategy uses independent remeshing for each physical quantity to reach a given accuracy. The second strategy only controls the accuracy on temperature. The third strategy uses a linear combination of the two normalized targets (the electric field intensity and the temperature. The analysis of the performance of each strategy is based on the convergence of the remeshing process in terms of number of elements. The efficiency of each strategy is also characterized by the number of computation iterations, the number of elements, the CPU time, and the RAM required to achieve a given target accuracy.

  8. ASTRID: A 3D Eulerian software for subcooled boiling modelling - comparison with experimental results in tubes and annuli

    Energy Technology Data Exchange (ETDEWEB)

    Briere, E.; Larrauri, D.; Olive, J. [Electricite de France, Chatou (France)

    1995-09-01

    For about four years, Electricite de France has been developing a 3-D computer code for the Eulerian simulation of two-phase flows. This code, named ASTRID, is based on the six-equation two-fluid model. Boiling water flows, such as those encountered in nuclear reactors, are among the main applications of ASTRID. In order to provide ASTRID with closure laws and boundary conditions suitable for boiling flows, a boiling model has been developed by EDF and the Institut de Mecanique des Fluides de Toulouse. In the fluid, the heat and mass transfer between a bubble and the liquid is being modelled. At the heating wall, the incipient boiling point is determined according to Hsu`s criterion and the boiling heat flux is split into three additive terms: a convective term, a quenching term and a vaporisation term. This model uses several correlations. EDF`s program in boiling two-phase flows also includes experimental studies, some of which are performed in collaboration with other laboratories. Refrigerant subcooled boiling both in tubular (DEBORA experiment, CEN Grenoble) and in annular geometry (Arizona State University Experiment) have been computed with ASTRID. The simulations show the satisfactory results already obtained on void fraction and liquid temperature. Ways of improvement of the model are drawn especially on the dynamical part.

  9. A Sensory 3D Map of the Odor Description Space Derived from a Comparison of Numeric Odor Profile Databases.

    Science.gov (United States)

    Zarzo, Manuel

    2015-06-01

    Many authors have proposed different schemes of odor classification, which are useful to aid the complex task of describing smells. However, reaching a consensus on a particular classification seems difficult because our psychophysical space of odor description is a continuum and is not clustered into well-defined categories. An alternative approach is to describe the perceptual space of odors as a low-dimensional coordinate system. This idea was first proposed by Crocker and Henderson in 1927, who suggested using numeric profiles based on 4 dimensions: "fragrant," "acid," "burnt," and "caprylic." In the present work, the odor profiles of 144 aroma chemicals were compared by means of statistical regression with comparable numeric odor profiles obtained from 2 databases, enabling a plausible interpretation of the 4 dimensions. Based on the results and taking into account comparable 2D sensory maps of odor descriptors from the literature, a 3D sensory map (odor cube) has been drawn up to improve understanding of the similarities and dissimilarities of the odor descriptors most frequently used in fragrance chemistry.

  10. Uav-Based Acquisition of 3d Point Cloud - a Comparison of a Low-Cost Laser Scanner and Sfm-Tools

    Science.gov (United States)

    Mader, D.; Blaskow, R.; Westfeld, P.; Maas, H.-G.

    2015-08-01

    The Project ADFEX (Adaptive Federative 3D Exploration of Multi Robot System) pursues the goal to develop a time- and cost-efficient system for exploration and monitoring task of unknown areas or buildings. A fleet of unmanned aerial vehicles equipped with appropriate sensors (laser scanner, RGB camera, near infrared camera, thermal camera) were designed and built. A typical operational scenario may include the exploration of the object or area of investigation by an UAV equipped with a laser scanning range finder to generate a rough point cloud in real time to provide an overview of the object on a ground station as well as an obstacle map. The data about the object enables the path planning for the robot fleet. Subsequently, the object will be captured by a RGB camera mounted on the second flying robot for the generation of a dense and accurate 3D point cloud by using of structure from motion techniques. In addition, the detailed image data serves as basis for a visual damage detection on the investigated building. This paper focuses on our experience with use of a low-cost light-weight Hokuyo laser scanner onboard an UAV. The hardware components for laser scanner based 3D point cloud acquisition are discussed, problems are demonstrated and analyzed, and a quantitative analysis of the accuracy potential is shown as well as in comparison with structure from motion-tools presented.

  11. 3D Animation Essentials

    CERN Document Server

    Beane, Andy

    2012-01-01

    The essential fundamentals of 3D animation for aspiring 3D artists 3D is everywhere--video games, movie and television special effects, mobile devices, etc. Many aspiring artists and animators have grown up with 3D and computers, and naturally gravitate to this field as their area of interest. Bringing a blend of studio and classroom experience to offer you thorough coverage of the 3D animation industry, this must-have book shows you what it takes to create compelling and realistic 3D imagery. Serves as the first step to understanding the language of 3D and computer graphics (CG)Covers 3D anim

  12. 3D video

    CERN Document Server

    Lucas, Laurent; Loscos, Céline

    2013-01-01

    While 3D vision has existed for many years, the use of 3D cameras and video-based modeling by the film industry has induced an explosion of interest for 3D acquisition technology, 3D content and 3D displays. As such, 3D video has become one of the new technology trends of this century.The chapters in this book cover a large spectrum of areas connected to 3D video, which are presented both theoretically and technologically, while taking into account both physiological and perceptual aspects. Stepping away from traditional 3D vision, the authors, all currently involved in these areas, provide th

  13. Optimized Volumetric Modulated Arc Therapy Versus 3D-CRT for Early Stage Mediastinal Hodgkin Lymphoma Without Axillary Involvement: A Comparison of Second Cancers and Heart Disease Risk

    Energy Technology Data Exchange (ETDEWEB)

    Filippi, Andrea Riccardo, E-mail: andreariccardo.filippi@unito.it [Department of Oncology, Radiation Oncology, University of Torino, Torino (Italy); Ragona, Riccardo; Piva, Cristina; Scafa, Davide; Fiandra, Christian [Department of Oncology, Radiation Oncology, University of Torino, Torino (Italy); Fusella, Marco; Giglioli, Francesca Romana [Medical Physics, AOU Città della Salute e della Scienza Hospital, Torino (Italy); Lohr, Frank [Department of Radiation Oncology, University Medical Center Mannheim, University of Heidelberg, Mannheim (Germany); Ricardi, Umberto [Department of Oncology, Radiation Oncology, University of Torino, Torino (Italy)

    2015-05-01

    Purpose: The purpose of this study was to evaluate the risks of second cancers and cardiovascular diseases associated with an optimized volumetric modulated arc therapy (VMAT) planning solution in a selected cohort of stage I/II Hodgkin lymphoma (HL) patients treated with either involved-node or involved-site radiation therapy in comparison with 3-dimensional conformal radiation therapy (3D-CRT). Methods and Materials: Thirty-eight patients (13 males and 25 females) were included. Disease extent was mediastinum alone (n=8, 21.1%); mediastinum plus unilateral neck (n=19, 50%); mediastinum plus bilateral neck (n=11, 29.9%). Prescription dose was 30 Gy in 2-Gy fractions. Only 5 patients had mediastinal bulky disease at diagnosis (13.1%). Anteroposterior 3D-CRT was compared with a multiarc optimized VMAT solution. Lung, breast, and thyroid cancer risks were estimated by calculating a lifetime attributable risk (LAR), with a LAR ratio (LAR{sub VMAT}-to-LAR{sub 3D-CRT}) as a comparative measure. Cardiac toxicity risks were estimated by calculating absolute excess risk (AER). Results: The LAR ratio favored 3D-CRT for lung cancer induction risk in mediastinal alone (P=.004) and mediastinal plus unilateral neck (P=.02) presentations. LAR ratio for breast cancer was lower for VMAT in mediastinal plus bilateral neck presentations (P=.02), without differences for other sites. For thyroid cancer, no significant differences were observed, regardless of anatomical presentation. A significantly lower AER of cardiac (P=.038) and valvular diseases (P<.0001) was observed for VMAT regardless of disease extent. Conclusions: In a cohort of patients with favorable characteristics in terms of disease extent at diagnosis (large prevalence of nonbulky presentations without axillary involvement), optimized VMAT reduced heart disease risk with comparable risks of thyroid and breast cancer, with an increase in lung cancer induction probability. The results are however strongly influenced by

  14. 3D finite element analysis of a metallic sphere scatterer comparison of first and second order vector absorbing boundary conditions

    Science.gov (United States)

    Kanellopoulos, V. N.; Webb, J. P.

    1993-03-01

    A 3D vector analysis of plane wave scattering by a metallic sphere using finite elements and Absorbing Boundary Conditions (ABCs) is presented. The ABCs are applied on the outer surface that truncates the infinitely extending domain. Mixed order curvilinear covariantprojection elements are used to avoid spurious corruptions. The second order ABC is superior to the first at no extra computational cost. The errors due to incomplete absorption decrease as the outer surface is moved further away from the scatterer. An error of about 1% in near-field values was obtained with the second order ABC, when the outer surface was less than half a wavelength from the scatterer. Une analyse tridimensionnelle vectorielle de la diffusion d'onde plane sur une sphère métallique utilisant des éléments finis et des Conditions aux Limites Absorbantes (CLA) est présentée. Les CLA sont appliquées sur la surface exteme tronquant le domaine s'étendant à l'infini. Des éléments curvilignes mixtes utilisant des projections covariantes sont utilisés pour éviter des solutions parasites. La CLA de second ordre est supérieure à celle de premier ordre sans effort de calcul additionnel. Les erreurs dues à l'absorption incomplète décroissent à mesure que l'on déplace la surface externe à une distance croissante du diffuseur. Un taux d'erreur d'environ 1 % dans les valeurs du champ proche a été obtenu avec les CLA de second ordre lorsque la surface externe était placée à une distance inférieure à une demi-longueur de la source de diffusion.

  15. Direct comparisons of 2D and 3D dental microwear proxies in extant herbivorous and carnivorous mammals.

    Science.gov (United States)

    DeSantis, Larisa R G; Scott, Jessica R; Schubert, Blaine W; Donohue, Shelly L; McCray, Brian M; Van Stolk, Courtney A; Winburn, Amanda A; Greshko, Michael A; O'Hara, Mackie C

    2013-01-01

    The analysis of dental microwear is commonly used by paleontologists and anthropologists to clarify the diets of extinct species, including herbivorous and carnivorous mammals. Currently, there are numerous methods employed to quantify dental microwear, varying in the types of microscopes used, magnifications, and the characterization of wear in both two dimensions and three dimensions. Results from dental microwear studies utilizing different methods are not directly comparable and human quantification of wear features (e.g., pits and scratches) introduces interobserver error, with higher error being produced by less experienced individuals. Dental microwear texture analysis (DMTA), which analyzes microwear features in three dimensions, alleviates some of the problems surrounding two-dimensional microwear methods by reducing observer bias. Here, we assess the accuracy and comparability within and between 2D and 3D dental microwear analyses in herbivorous and carnivorous mammals at the same magnification. Specifically, we compare observer-generated 2D microwear data from photosimulations of the identical scanned areas of DMTA in extant African bovids and carnivorans using a scanning white light confocal microscope at 100x magnification. Using this magnification, dental microwear features quantified in 2D were able to separate grazing and frugivorous bovids using scratch frequency; however, DMTA variables were better able to discriminate between disparate dietary niches in both carnivorous and herbivorous mammals. Further, results demonstrate significant interobserver differences in 2D microwear data, with the microwear index remaining the least variable between experienced observers, consistent with prior research. Overall, our results highlight the importance of reducing observer error and analyzing dental microwear in three dimensions in order to consistently interpret diets accurately. PMID:23936506

  16. Direct comparisons of 2D and 3D dental microwear proxies in extant herbivorous and carnivorous mammals.

    Directory of Open Access Journals (Sweden)

    Larisa R G DeSantis

    Full Text Available The analysis of dental microwear is commonly used by paleontologists and anthropologists to clarify the diets of extinct species, including herbivorous and carnivorous mammals. Currently, there are numerous methods employed to quantify dental microwear, varying in the types of microscopes used, magnifications, and the characterization of wear in both two dimensions and three dimensions. Results from dental microwear studies utilizing different methods are not directly comparable and human quantification of wear features (e.g., pits and scratches introduces interobserver error, with higher error being produced by less experienced individuals. Dental microwear texture analysis (DMTA, which analyzes microwear features in three dimensions, alleviates some of the problems surrounding two-dimensional microwear methods by reducing observer bias. Here, we assess the accuracy and comparability within and between 2D and 3D dental microwear analyses in herbivorous and carnivorous mammals at the same magnification. Specifically, we compare observer-generated 2D microwear data from photosimulations of the identical scanned areas of DMTA in extant African bovids and carnivorans using a scanning white light confocal microscope at 100x magnification. Using this magnification, dental microwear features quantified in 2D were able to separate grazing and frugivorous bovids using scratch frequency; however, DMTA variables were better able to discriminate between disparate dietary niches in both carnivorous and herbivorous mammals. Further, results demonstrate significant interobserver differences in 2D microwear data, with the microwear index remaining the least variable between experienced observers, consistent with prior research. Overall, our results highlight the importance of reducing observer error and analyzing dental microwear in three dimensions in order to consistently interpret diets accurately.

  17. Size-based emphysema cluster analysis on low attenuation area in 3D volumetric CT: comparison with pulmonary functional test

    Science.gov (United States)

    Lee, Minho; Kim, Namkug; Lee, Sang Min; Seo, Joon Beom; Oh, Sang Young

    2015-03-01

    To quantify low attenuation area (LAA) of emphysematous regions according to cluster size in 3D volumetric CT data of chronic obstructive pulmonary disease (COPD) patients and to compare these indices with their pulmonary functional test (PFT). Sixty patients with COPD were scanned by a more than 16-multi detector row CT scanner (Siemens Sensation 16 and 64) within 0.75mm collimation. Based on these LAA masks, a length scale analysis to estimate each emphysema LAA's size was performed as follows. At first, Gaussian low pass filter from 30mm to 1mm kernel size with 1mm interval on the mask was performed from large to small size, iteratively. Centroid voxels resistant to the each filter were selected and dilated by the size of the kernel, which was regarded as the specific size emphysema mask. The slopes of area and number of size based LAA (slope of semi-log plot) were analyzed and compared with PFT. PFT parameters including DLco, FEV1, and FEV1/FVC were significantly (all p-value< 0.002) correlated with the slopes (r-values; -0.73, 0.54, 0.69, respectively) and EI (r-values; -0.84, -0.60, -0.68, respectively). In addition, the D independently contributed regression for FEV1 and FEV1/FVC (adjust R sq. of regression study: EI only, 0.70, 0.45; EI and D, 0.71, 0.51, respectively). By the size based LAA segmentation and analysis, we evaluated the Ds of area, number, and distribution of size based LAA, which would be independent factors for predictor of PFT parameters.

  18. Comparison of climate datasets for lumped hydrological modeling over the continental United States

    Science.gov (United States)

    Essou, Gilles R. C.; Arsenault, Richard; Brissette, François P.

    2016-06-01

    Climate data measured by weather stations are crucially important and regularly used in hydrologic modeling. However, they are not always available due to the low spatial density and short record history of many station networks. To overcome these limitations, gridded datasets have become increasingly available. They have excellent continuous spatial coverage and no missing data. However, these datasets are usually interpolated using station data, with little new information besides elevation. Furthermore, minimal validation has been done on most of these datasets. This study compares three such datasets covering the continental United States to evaluate their differences and their impact on lumped hydrological modeling. Three daily time step gridded datasets with resolutions varying between 0.25° and 1 km were used in this study - Santa-Clara, Daymet and CPC. The hydrological modeling evaluation of these datasets was performed over 424 basins from the MOPEX database. Results show that there are significant differences between the datasets, even though they were essentially all interpolated from almost the same climate databases. Despite those differences, the hydrological model used in this study was able to perform equally well after a specific calibration to each dataset. While there were a few exceptions, by and large, Nash-Sutcliffe efficiency metrics obtained in validation were not statistically different from one database to the other for most basins. It appears that there are no reasons to favor one dataset versus another for lumped hydrological modeling, and that these datasets perform just as well as using the original station data.

  19. 3D simulation of near-fault strong ground motion:comparison between surface rupture fault and buried fault

    Institute of Scientific and Technical Information of China (English)

    Liu Qifang; Yuan Yifan; Jin Xing

    2007-01-01

    In this paper,near-fault strong ground motions caused by a surface rupture fault(SRF)and a buried fault(BF) are numerically simulated and compared by using a time-space-decoupled,explicit finite element method combined with a multi-transmitting formula(MTF) of an artificial boundary.Prior to the comparison,verification of the explicit element method and the MTF is conducted.The comparison results show that the final dislocation of the SRF is larger than the BF for the same stress drop on the fault plane.The maximum final dislocation occurs on the fault upper line for the SRF;however,for the BF,the maximum final dislocation is located on the fault central part.Meanwhile,the PGA,PGV and PGD of long period ground motions(≤1 Hz)generated by the SRF are much higher than those of the BF in the near-fault region.The peak value of the velocity pulse generated by the SRF is also higher than the BF.Furthermore,it is found that in a very narrow region along the fault trace,ground motions caused by the SRF are much higher than by the BF.These results may explain why SRFs almost always cause heavy damage in near-fault regions compared to buried faults.

  20. 食管癌不同部位病灶的3D-CRT及IMRT治疗计划比较%Comparison of 3D-CRT and IMRT on different locations of esophageal carcinoma

    Institute of Scientific and Technical Information of China (English)

    王锋; 蔡晶; 谢国栋; 何晓军; 吴建亭; 赵永亮

    2012-01-01

    Objective To compare the differences between IMRT and 32>CRT on radiation dosimetry of esophageal carcinoma. Methods Patients with cervical oesophagus, upper, middle and lower thoracic portion (10 cases each) received 3D-CRT and IMRT. The various parameters of PTV target area, normal tissue irradiated volume, dose, MLD and NTCP of the two methods were compared. Results There was statistical significance of target area CI and PTV dose in cervical oesophagus group. There was statistical significance of CI, PTV dose, HI and lung tissue protection in middle thoracic group. There was statistical significance of CI, PTV dose, HI in lower thoracic group. Conclusion In the different locations of esophageal carcinoma, the target area CI of IMRT is obviously superior to that of 3D-CRT. The HI of IMRT in middle-lower thoracic carcinoma is obviously superior to that of 3D-CRT. There is no obvious advantage in lung and spinal cord protection of cervical, upper and lower thoracic with IMRT than that with 3D-CRT. In middle thoracic esophageal carcinoma, the lung tissue protection with IMRT is superior to that with 3D-CRT, but there is no obvious advantage in spinal cord and heart protection.%目的 比较调强放疗(IMRT)与三维适形放疗(3D-CRT)在食管癌放疗剂量学的差异.方法 应用IMRT治疗计划系统治疗食管颈段与胸上、胸中段及胸下段癌患者各10例,分别采用3D-CRT及IMRT,比较2种计划PTV靶区各项参数及各项正常组织受照射体积、剂量、平均肺受量(MLD)及正常组织并发症概率(NTCP).结果 颈段及胸上段组,靶区适形度指数(CI)及靶区计划体积(PTV)剂量学比较,差异有统计学意义.胸中段组,IMRT较3D-CRT在CI、靶区剂量不均匀指数(HI)、肺组织保护方面的优势明显,差异有统计学意义.胸下段组,靶区CI、PTV剂量学及H1的比较,差异有统计学意义.结论 3种不同部位的食管癌中,IMRT的靶区CI明显优于3D-CRT;胸中

  1. Comparison of 3D Maximum A Posteriori and Filtered Backprojection algorithms for high resolution animal imaging in microPET

    Energy Technology Data Exchange (ETDEWEB)

    Chatziioannou, A.; Qi, J.; Moore, A.; Annala, A.; Nguyen, K.; Leahy, R.M.; Cherry, S.R.

    2000-01-01

    We have evaluated the performance of two three dimensional reconstruction algorithms with data acquired from microPET, a high resolution tomograph dedicated to small animal imaging. The first was a linear filtered-backprojection algorithm (FBP) with reprojection of the missing data and the second was a statistical maximum-aposteriori probability algorithm (MAP). The two algorithms were evaluated in terms of their resolution performance, both in phantoms and in vivo. Sixty independent realizations of a phantom simulating the brain of a baby monkey were acquired, each containing 3 million counts. Each of these realizations was reconstructed independently with both algorithms. The ensemble of the sixty reconstructed realizations was used to estimate the standard deviation as a measure of the noise for each reconstruction algorithm. More detail was recovered in the MAP reconstruction without an increase in noise relative to FBP. Studies in a simple cylindrical compartment phantom demonstrated improved recovery of known activity ratios with MAP. Finally in vivo studies also demonstrated a clear improvement in spatial resolution using the MAP algorithm. The quantitative accuracy of the MAP reconstruction was also evaluated by comparison with autoradiography and direct well counting of tissue samples and was shown to be superior.

  2. Simulation of platelet, thrombus and erythrocyte hydrodynamic interactions in a 3D arteriole with in vivo comparison.

    Directory of Open Access Journals (Sweden)

    Weiwei Wang

    Full Text Available Cylindrical blood vessels, ellipsoid platelets and biconcave-shaped deformable erythrocytes (RBCs are important participants in hemostasis and thrombosis. However, due to the challenge of combining these components in simulation tools, few simulation studies have included all of them in realistic three-dimensional models. In the present study, we apply a recently developed simulation model to incorporate these components and analyze the flow in a thrombotic tubular arteriole, particularly the detailed hydrodynamic interactions between the thrombus shape, RBCs and platelets. It was found that at certain azimuth positions, the velocity drops in the proximity of both the upstream and downstream edge of the thrombus, which is accompanied by a rapid velocity increase in the narrowed region. The RBCs alter the flow profiles significantly from the typical low Reynolds (Re number flow, and also enhance the deposition of free flowing platelets onto the thrombus. By evaluating the platelet-thrombus interaction and platelet-RBC interaction together, several mechanisms of platelet deposition augmentation are identified. With in vivo data comparison, our model illustrates the potential of future thrombosis studies that incorporate detailed receptor-ligand adhesion modules.

  3. Comparison of 3D Maximum A Posteriori and Filtered Backprojection algorithms for high resolution animal imaging in microPET

    International Nuclear Information System (INIS)

    We have evaluated the performance of two three dimensional reconstruction algorithms with data acquired from microPET, a high resolution tomograph dedicated to small animal imaging. The first was a linear filtered-backprojection algorithm (FBP) with reprojection of the missing data and the second was a statistical maximum-aposteriori probability algorithm (MAP). The two algorithms were evaluated in terms of their resolution performance, both in phantoms and in vivo. Sixty independent realizations of a phantom simulating the brain of a baby monkey were acquired, each containing 3 million counts. Each of these realizations was reconstructed independently with both algorithms. The ensemble of the sixty reconstructed realizations was used to estimate the standard deviation as a measure of the noise for each reconstruction algorithm. More detail was recovered in the MAP reconstruction without an increase in noise relative to FBP. Studies in a simple cylindrical compartment phantom demonstrated improved recovery of known activity ratios with MAP. Finally in vivo studies also demonstrated a clear improvement in spatial resolution using the MAP algorithm. The quantitative accuracy of the MAP reconstruction was also evaluated by comparison with autoradiography and direct well counting of tissue samples and was shown to be superior

  4. EUROPEANA AND 3D

    Directory of Open Access Journals (Sweden)

    D. Pletinckx

    2012-09-01

    Full Text Available The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  5. In vitro comparison of Doppler and catheter-measured pressure gradients in 3D models of mitral valve calcification.

    Science.gov (United States)

    Herrmann, Tarrah A; Siefert, Andrew W; Pressman, Gregg S; Gollin, Hannah R; Touchton, Steven A; Saikrishnan, Neelakantan; Yoganathan, Ajit P

    2013-09-01

    Mitral annular calcification (MAC) involves calcium deposition in the fibrous annulus supporting the mitral valve (MV). When calcification extends onto the leaflets, valve opening can be restricted. The influence of MAC MV geometry on Doppler gradients is unknown. This study describes a novel methodology to rapid-prototype subject-specific MAC MVs. Replicated valves were used to assess the effects of distorted annular-leaflet geometry on Doppler-derived, transmitral gradients in comparison to direct pressure measurements and to determine if transmitral gradients vary according to measurement location. Three-dimensional echocardiography data sets were selected for two MAC MVs and one healthy MV. These MVs were segmented and rapid prototyped in their middiastolic configuration for in vitro testing. The effects of MV geometry, measurement modality, and measurement location on transmitral pressure gradient were assessed by Doppler and catheter at three locations along the MV's intercommissural axis. When comparing dimensions of the rapid-prototyped valves to the subject echocardiography data sets, mean relative errors ranged from 6.2% to 35%. For the evaluated MVs, Doppler pressure gradients exhibited good agreement with catheter-measured gradients at a variety of flow rates, though with slight systematic overestimation in the recreated MAC valves. For all of the tested MVs, measuring the transmitral pressure gradient at differing valve orifice positions had minimal impact on observed gradients. Upon the testing of additional normal and calcific MVs, these data may contribute to an improved clinical understanding of MAC-related mitral stenosis. Moreover, they provide the ability to statistically evaluate between measurement locations, flow rates, and valve geometries for Doppler-derived pressure gradients. Determining these end points will contribute to greater clinical understanding for the diagnosis MAC patients and understanding the use and application of Doppler

  6. Solid works 3D

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Cheol Yeong

    2004-02-15

    This book explains modeling of solid works 3D and application of 3D CAD/CAM. The contents of this book are outline of modeling such as CAD and 2D and 3D, solid works composition, method of sketch, writing measurement fixing, selecting projection, choosing condition of restriction, practice of sketch, making parts, reforming parts, modeling 3D, revising 3D modeling, using pattern function, modeling necessaries, assembling, floor plan, 3D modeling method, practice floor plans for industrial engineer data aided manufacturing, processing of CAD/CAM interface.

  7. Solid works 3D

    International Nuclear Information System (INIS)

    This book explains modeling of solid works 3D and application of 3D CAD/CAM. The contents of this book are outline of modeling such as CAD and 2D and 3D, solid works composition, method of sketch, writing measurement fixing, selecting projection, choosing condition of restriction, practice of sketch, making parts, reforming parts, modeling 3D, revising 3D modeling, using pattern function, modeling necessaries, assembling, floor plan, 3D modeling method, practice floor plans for industrial engineer data aided manufacturing, processing of CAD/CAM interface.

  8. Simulations of a rotor with active deformable trailing edge flaps in half-wake inflow: Comparison of EllipSys 3D with HAWC2

    DEFF Research Database (Denmark)

    Barlas, Thanasis K.; Zahle, Frederik; Sørensen, Niels N.;

    2012-01-01

    . In this study, a comparison between aerodynamic predictions of the aeroelastic code HAWC2 and the Navier-Stokes code EllipSys3D for the NREL 5MW reference wind turbine rotor in a stiff configuration equipped with a deformable trailing edge flap is performed. A case where the half rotor plane experiences......Various research projects have focused on active aerodynamic load control of wind turbines using control devices on the blades, for example flaps. The aerodynamic load predictions of utilized aeroelastic codes have not yet been fully validated with full rotor CFD or experimental results...... an inflow resembling the wake from an upstream wind turbine is investigated, which is appropriate for comparing the predictions of the two codes related to the abrupt aerodynamic response and the influence of the controllable flap. The trailing edge flap is actuated to alleviate the added loads from a non...

  9. Exact monitoring of aortic diameters in Marfan patients without gadolinium contrast: intraindividual comparison of 2D SSFP imaging with 3D CE-MRA and echocardiography

    Energy Technology Data Exchange (ETDEWEB)

    Veldhoen, Simon [University Medical Center Wuerzburg, Department of Diagnostic and Interventional Radiology, Bavaria (Germany); University Medical Center Hamburg-Eppendorf, Department of Diagnostic and Interventional Radiology, Hamburg (Germany); Behzadi, Cyrus; Derlin, Thorsten; Henes, Frank Oliver; Adam, Gerhard; Bannas, Peter [University Medical Center Hamburg-Eppendorf, Department of Diagnostic and Interventional Radiology, Hamburg (Germany); Rybczinsky, Meike; Kodolitsch, Yskert von; Sheikhzadeh, Sara [University Medical Center Hamburg-Eppendorf, Department of General and Interventional Cardiology, Hamburg (Germany); Bley, Thorsten Alexander [University Medical Center Wuerzburg, Department of Diagnostic and Interventional Radiology, Bavaria (Germany)

    2014-10-15

    To assess whether ECG-gated non-contrast 2D steady-state free precession (SSFP) imaging allows for exact monitoring of aortic diameters in Marfan syndrome (MFS) patients using non-ECG-gated contrast-enhanced 3D magnetic resonance angiography (CE-MRA) and echocardiography for intraindividual comparison. Non-ECG-gated CE-MRA and ECG-gated non-contrast SSFP at 1.5 T were prospectively performed in 50 patients. Two readers measured aortic diameters on para-sagittal images identically aligned with the aortic arch at the sinuses of Valsalva, sinotubular junction, ascending/descending aorta and aortic arch. Image quality was assessed on a three-point scale. Aortic root diameters acquired by echocardiography were used as reference. Intra- and interobserver variances were smaller for SSFP at the sinuses of Valsalva (p = 0.002; p = 0.002) and sinotubular junction (p = 0.014; p = 0.043). Image quality was better in SSFP than in CE-MRA at the sinuses of Valsalva (p < 0.0001), sinotubular junction (p < 0.0001) and ascending aorta (p = 0.02). CE-MRA yielded higher diameters than SSFP at the sinuses of Valsalva (mean bias, 2.5 mm; p < 0.0001), and comparison with echocardiography confirmed a higher bias for CE-MRA (7.2 ± 3.4 mm vs. SSFP, 4.7 ± 2.6 mm). ECG-gated non-contrast 2D SSFP imaging provides superior image quality with higher validity compared to non-ECG-gated contrast-enhanced 3D imaging. Since CE-MRA requires contrast agents with potential adverse effects, non-contrast SSFP imaging is an appropriate alternative for exact and riskless aortic monitoring of MFS patients. (orig.)

  10. Exact monitoring of aortic diameters in Marfan patients without gadolinium contrast: intraindividual comparison of 2D SSFP imaging with 3D CE-MRA and echocardiography

    International Nuclear Information System (INIS)

    To assess whether ECG-gated non-contrast 2D steady-state free precession (SSFP) imaging allows for exact monitoring of aortic diameters in Marfan syndrome (MFS) patients using non-ECG-gated contrast-enhanced 3D magnetic resonance angiography (CE-MRA) and echocardiography for intraindividual comparison. Non-ECG-gated CE-MRA and ECG-gated non-contrast SSFP at 1.5 T were prospectively performed in 50 patients. Two readers measured aortic diameters on para-sagittal images identically aligned with the aortic arch at the sinuses of Valsalva, sinotubular junction, ascending/descending aorta and aortic arch. Image quality was assessed on a three-point scale. Aortic root diameters acquired by echocardiography were used as reference. Intra- and interobserver variances were smaller for SSFP at the sinuses of Valsalva (p = 0.002; p = 0.002) and sinotubular junction (p = 0.014; p = 0.043). Image quality was better in SSFP than in CE-MRA at the sinuses of Valsalva (p < 0.0001), sinotubular junction (p < 0.0001) and ascending aorta (p = 0.02). CE-MRA yielded higher diameters than SSFP at the sinuses of Valsalva (mean bias, 2.5 mm; p < 0.0001), and comparison with echocardiography confirmed a higher bias for CE-MRA (7.2 ± 3.4 mm vs. SSFP, 4.7 ± 2.6 mm). ECG-gated non-contrast 2D SSFP imaging provides superior image quality with higher validity compared to non-ECG-gated contrast-enhanced 3D imaging. Since CE-MRA requires contrast agents with potential adverse effects, non-contrast SSFP imaging is an appropriate alternative for exact and riskless aortic monitoring of MFS patients. (orig.)

  11. Comparison of precipitation datasets over the tropical South American and African Continents.

    Science.gov (United States)

    Negron-Juarez, R. I.; Li, W.; Fu, R.; Fernandes, K.; Cardoso, A.

    2007-12-01

    Six rainfall datasets are compared over the Amazon basin, the Northeast Brazil and the Congo basin. These datasets include three gauge-only precipitation products from the Climatic Prediction Center (CPC), Global Precipitation Climatology Center (GPCC) and Brazilian Weather Forecast and Climate Studies Center (CLMNLS), and three combined gauge and satellite precipitation datasets from the CPC Merged Analysis of Precipitation (CMAP), Global Precipitation Climatology Project (GPCP) precipitation, and Tropical Rainfall Measuring Mission (TRMM) product. The spatial pattern of the annual precipitation is consistently represented by these data, despite of the differences in methods and periods of averaging. Quantitatively, the differences in annual precipitation among these datasets are 3% over our Amazon domain (0-15S, 50-70W), 17% over the Northeast Brazil (5-10S, 35-45W) and 12% the Congo domain (5N-10S, 15-30E). However the seasonal differences were. Over the Amazon domain, the rainfall variations are well correlated between CPC, GPCC, TRMM, GPCP and GPCC (>0.9) except for the northwestern Amazon. Over the Congo basin, the correlation between these rainfall datasets is generally below 0.7. The Empirical Orthogonal Functions analysis suggests large discrepancies in interannual and decadal variations of rainfall among these datasets, especially for the Congo basin and for the South American region after 1998.

  12. 3d-3d correspondence revisited

    Science.gov (United States)

    Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-01

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  13. IZDELAVA TISKALNIKA 3D

    OpenAIRE

    Brdnik, Lovro

    2015-01-01

    Diplomsko delo analizira trenutno stanje 3D tiskalnikov na trgu. Prikazan je razvoj in principi delovanja 3D tiskalnikov. Predstavljeni so tipi 3D tiskalnikov, njihove prednosti in slabosti. Podrobneje je predstavljena zgradba in delovanje koračnih motorjev. Opravljene so meritve koračnih motorjev. Opisana je programska oprema za rokovanje s 3D tiskalniki in komponente, ki jih potrebujemo za izdelavo. Diploma se oklepa vprašanja, ali je izdelava 3D tiskalnika bolj ekonomična kot pa naložba v ...

  14. A statistical comparison of four precipitation climate datasets in the Ganges-Brahmaputra-Meghna River basin

    Science.gov (United States)

    Brenton, James

    There are 630 million people that live within the Ganges-Brahmaputra-Meghna River basin (GBM) who depend on these rivers for their livelihood (Frenken, 2011). These rivers greatly depend upon the precipitation and rain fall to contribute to their flows. Researchers and end-users in the GBM basin depend on climate precipitation datasets to help them study the impact precipitation has the hydrology and agricultural. To properly utilize a dataset, the source input data, the algorithms used to merge the data, and the final temporal and spatial resolution of the dataset all need to be properly understood. The goal for this study is to statistically compare four climate precipitation datasets, GPCP, CMAP, CHIRPS and APHRODITE, in the GBM basin to identify significant differences among them. Their respective data will be compared and, the evaluations will be shared with the SERVIR science team and the hydrologists at ICIMOD. Then, SERVIR and ICIMOD can better aid decision makers in the GBM Basin by improving their knowledge and interpretation of precipitation datasets and how it will affect the people of the GBM Basin.

  15. 双手和双腕关节3D LAVA和FAME MR动态增强扫描对比%Study of bilateral hands and wrists with MR dynamic contrast-enhanced imaging with comparison of 3D LAVA sequence and 3D FAME sequence

    Institute of Scientific and Technical Information of China (English)

    张森; 刘霞; 李绪斌; 杜湘珂

    2011-01-01

    目的:通过对比分析双手、双腕关节3D LAVA和FAME MR动态增强扫描图像质量差异,探讨双手、双腕关节理想的MR动态增强成像序列.方法:对34例以双手、双腕多关节肿痛初诊患者行MR动态增强扫描,其中9例行3D FAME动态增强扫描,25例行3D AVA动态增强扫描.采用3分法对比评估两种成像方法图像质量.结果:25例3D LAVA动态增强扫描患者中图像质量3分22例,2分3例;9例3D FAME动态增强扫患者中2分6例,1分3例.3DLAVA动态增强扫描获得优良图像(2分及以上)明显多于3D FAME动态增强扫描(P= 0.014).结论:双手、双腕关节3D LAVA动态增强扫描图像质量优于3D FAME动态增强扫描,是一种理想的双手、双腕关节MR动态增强成像序列.%Objective:To investigate an ideal MR dynamic contrast-enhanced imaging sequence for bilateral hands and wrists by comparing liver acquisition with 3D volume acceleration (LAVA) sequence with 3D fast acquisition with multiphase enhanced fast GRE (FAME) sequence. Methods: Thirty-four patients with polyarthralgia including involvement of hands and wrists during their first visit had MR dynamic contrast-enhanced imaging performed. 3D FAME sequence was used in 9 cases and 3D LAVA sequence in 25 cases. Image quality was evaluated with a 3-point system. Results: Of the 25 cases with 3D LAVA sequence,3 points were scored in 22 cases and 2 points were scored in 3 cases. Of the 9 cases with 3D FAME sequence,2 points were scored in 6 cases and 1 point was scored in 3 cases. 3D LAVA sequence was superior to 3D FAME sequence in image quality by achieving more good images (P = 0. 014). Conclusion: The image quality of images achieved with 3D LAVA sequence was better than that of 3D FAME sequence. 3D LAVA sequence might be an ideal MR dynamic contrast-enhanced imaging sequence for bilateral hands and wrists.

  16. Evaluation of Methods for Comparison of Spatiotemporal and Time Series Datasets

    Energy Technology Data Exchange (ETDEWEB)

    Getman, Dan [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Bush, Brian [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Inman, Danny [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Elmore, Ryan [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2015-04-07

    Data used by the National Renewable Energy Laboratory (NREL) in energy analysis are often produced by industry and licensed or purchased for analysis. While this practice provides needed flexibility in selecting data for analysis it presents challenges in understanding the differences among multiple, ostensibly similar, datasets. As options for source data become more varied, it is important to be able to articulate why certain datasets were chosen and to ensure those include the data that best meet the boundaries and/or limitations of a particular analysis. This report represents the first of three phases of research intended to develop methods to quantitatively assess and compare both input datasets and the results of analyses performed at NREL. This capability is critical to identifying tipping points in the costs or benefits of achieving high spatial and temporal resolution of input data.

  17. A comparison of the performance of the 3-D super-ensemble and an ensemble Kalman filter for short-range regional ocean prediction

    Directory of Open Access Journals (Sweden)

    Baptiste Mourre

    2014-01-01

    Full Text Available This study compares the ability of two approaches integrating models and data to forecast the Ligurian Sea regional oceanographic conditions in the short-term range (0–72 hours when constrained by a common observation dataset. The post-processing 3-D super-ensemble (3DSE algorithm, which uses observations to optimally combine multi-model forecasts into a single prediction of the oceanic variable, is first considered. The 3DSE predictive skills are compared to those of the Regional Ocean Modeling System model in which observations are assimilated through a more conventional ensemble Kalman filter (EnKF approach. Assimilated measurements include sea surface temperature maps, and temperature and salinity subsurface observations from a fleet of five underwater gliders. Retrospective analyses are carried out to produce daily predictions during the 11-d period of the REP10 sea trial experiment. The forecast skill evaluation based on a distributed multi-sensor validation dataset indicates an overall superior performance of the EnKF, both at the surface and at depth. While the 3DSE and EnKF perform comparably well in the area spanned by the incorporated measurements, the 3DSE accuracy is found to rapidly decrease outside this area. In particular, the univariate formulation of the method combined with the absence of regular surface salinity measurements produces large errors in the 3DSE salinity forecast. On the contrary, the EnKF leads to more homogeneous forecast errors over the modelling domain for both temperature and salinity. The EnKF is found to consistently improve the predictions with respect to the control solution without assimilation and to be positively skilled when compared to the climatological estimate. For typical regional oceanographic applications with scarce subsurface observations, the lack of physical spatial and multivariate error covariances applicable to the individual model weights in the 3DSE formulation constitutes a major

  18. 3D and Education

    Science.gov (United States)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  19. The Use of Airborne and Mobile Laser Scanning for Modeling Railway Environments in 3D

    Directory of Open Access Journals (Sweden)

    Lingli Zhu

    2014-04-01

    Full Text Available This paper presents methods for 3D modeling of railway environments from airborne laser scanning (ALS and mobile laser scanning (MLS. Conventionally, aerial data such as ALS and aerial images were utilized for 3D model reconstruction. However, 3D model reconstruction only from aerial-view datasets can not meet the requirement of advanced visualization (e.g., walk-through visualization. In this paper, objects in a railway environment such as the ground, railroads, buildings, high voltage powerlines, pylons and so on were reconstructed and visualized in real-life experiments in Kokemaki, Finland. Because of the complex terrain and scenes in railway environments, 3D modeling is challenging, especially for high resolution walk-through visualizations. However, MLS has flexible platforms and provides the possibility of acquiring data in a complex environment in high detail by combining with ALS data to produce complete 3D scene modeling. A procedure from point cloud classification to 3D reconstruction and 3D visualization is introduced, and new solutions are proposed for object extraction, 3D reconstruction, model simplification and final model 3D visualization. Image processing technology is used for the classification, 3D randomized Hough transformations (RHT are used for the planar detection, and a quadtree approach is used for the ground model simplification. The results are visually analyzed by a comparison with an orthophoto at a 20 cm ground resolution.

  20. 3D Hilbert Space Filling Curves in 3D City Modeling for Faster Spatial Queries

    DEFF Research Database (Denmark)

    Ujang, Uznir; Antón Castro, Francesc/François; Azri, Suhaibah;

    2014-01-01

    objects. In this research, the authors propose an opponent data constellation technique of space-filling curves (3D Hilbert curves) for 3D city model data representation. Unlike previous methods, that try to project 3D or n-dimensional data down to 2D or 3D using Principal Component Analysis (PCA......) or Hilbert mappings, in this research, they extend the Hilbert space-filling curve to one higher dimension for 3D city model data implementations. The query performance was tested for single object, nearest neighbor and range search queries using a CityGML dataset of 1,000 building blocks and the results...... are presented in this paper. The advantages of implementing space-filling curves in 3D city modeling will improve data retrieval time by means of optimized 3D adjacency, nearest neighbor information and 3D indexing. The Hilbert mapping, which maps a sub-interval of the ([0,1]) interval to the corresponding...

  1. Precipitation comparison for the CFSR, MERRA, TRMM3B42 and Combined Scheme datasets in Bolivia

    Science.gov (United States)

    Blacutt, Luis A.; Herdies, Dirceu L.; de Gonçalves, Luis Gustavo G.; Vila, Daniel A.; Andrade, Marcos

    2015-09-01

    An overwhelming number of applications depend on reliable precipitation estimations. However, over complex terrain in regions such as the Andes or the southwestern Amazon, the spatial coverage of rain gauges is scarce. Two reanalysis datasets, a satellite algorithm and a scheme that combines surface observations with satellite estimations were selected for studying rainfall in the following areas of Bolivia: the central Andes, Altiplano, southwestern Amazonia, and Chaco. These Bolivian regions can be divided into three main basins: the Altiplano, La Plata, and Amazon. The selected reanalyses were the Modern-Era Retrospective Analysis for Research and Applications, which has a horizontal resolution (~ 50 km) conducive for studying rainfall in relatively small precipitation systems, and the Climate Forecast System Reanalysis and Reforecast, which features an improved horizontal resolution (~ 38 km). The third dataset was the seventh version of the Tropical Rainfall Measurement Mission 3B42 algorithm, which is conducive for studying rainfall at an ~ 25 km horizontal resolution. The fourth dataset utilizes a new technique known as the Combined Scheme, which successfully removes satellite bias. All four of these datasets were aggregated to a coarser resolution. Additionally, the daily totals were calculated to match the cumulative daily values of the ground observations. This research aimed to describe and compare precipitations in the two reanalysis datasets, the satellite-algorithm dataset, and the Combined Scheme with ground observations. Two seasons were selected for studying the precipitation estimates: the rainy season (December-February) and the dry season (June-August). The average, bias, standard deviation, correlation coefficient, and root mean square error were calculated. Moreover, a contingency table was generated to calculate the accuracy, bias frequency, probability of detection, false alarm ratio, and equitable threat score. All four datasets correctly

  2. Inter-comparison of stratospheric mean-meridional circulation and eddy mixing among six reanalysis datasets

    Directory of Open Access Journals (Sweden)

    K. Miyazaki

    2015-10-01

    Full Text Available The stratospheric mean-meridional circulation (MMC and eddy mixing are compared among six meteorological reanalysis datasets: NCEP-NCAR, NCEP-CFSR, ERA-40, ERA-Interim, JRA-25, and JRA-55 for the period 1979–2012. The reanalysis datasets produced using advanced systems (i.e., NCEP-CFSR, ERA-Interim, and JRA-55 generally reveal a weaker MMC and stronger eddy mixing in the Northern Hemisphere (NH compared with those produced using older systems (i.e., NCEP/NCAR, ERA-40, and JRA-25. In the NH lower stratosphere, the stronger eddy mixing is attributed to stronger planetary-scale mixing in the new datasets, whereas small-scale mixing is weaker in the new datasets. Conventional data assimilation techniques introduce analysis increments without maintaining physical balance, which may have caused an overly strong MMC and spurious small-scale eddies in the old datasets. At the NH mid-latitudes, only ERA-Interim reveals a weakening MMC trend in the deep branch of the Brewer–Dobson Circulation (BDC. The relative importance of the eddy mixing compared with the mean transport in the subtropical lower stratosphere is considered to be important in controlling mean Age-of-Air (AoA variations above, which showed increasing trends in ERA-Interim and JRA-55; this together with the weakened MMC in the deep branch may imply an increasing AoA trend in the NH middle stratosphere in ERA-Interim. Overall, discrepancies between the different variables and trends therein as derived from the different reanalyses are still relatively large, suggesting that more investments into these products are needed in order to obtain a consolidated picture of observed changes in the BDC and the mechanisms that drive them.

  3. A dosimetric comparison between 3D-Conformal radiation therapy and intensity modulated radiation therapy plans in the treatment of posterior fossa boost in children with high risk medulloblastom

    Institute of Scientific and Technical Information of China (English)

    Saad El Din I; Abd El AAl H; Makaar W; Mashhour K; El Beih D; Hashem W

    2013-01-01

    Objective:The work is a comparative study between two modalities of radiation therapy, the aim of which is to compare 3D conformal radiation therapy (3D-CRT) and intensity modulated radiation therapy (IMRT) in treating posterior fossa boost in children with high risk medul oblastoma;dosimetrical y evaluating and comparing both techniques as regard target coverage and doses to organs at risk (OAR). Methods:Twenty patients with high risk medul oblastoma were treated by 3D-CRT technique. A dosimetric comparison was done by performing two plans for the posterior fossa boost, 3D-CRT and IMRT plans, for the same patient using Eclipse planning system (version 8.6). Results:IMRT had a better conformity index compared to 3D-CRT plans (P value of 0.000). As for the dose homogeneity it was also better in the IMRT plans, yet it hasn’t reached the statistical significant value. Also, doses received by the cochleae, brainstem and spinal cord were significantly less in the IMRT plans than those of 3D-CRT (P value<0.05). Conclusion:IMRT technique was clearly able to improve conformity and homogeneity index, spare the cochleae, reduce dose to the brainstem and spinal cord in comparison to 3D-CRT technique.

  4. User-Appropriate Viewer for High Resolution Interactive Engagement with 3d Digital Cultural Artefacts

    Science.gov (United States)

    Gillespie, D.; La Pensée, A.; Cooper, M.

    2013-07-01

    Three dimensional (3D) laser scanning is an important documentation technique for cultural heritage. This technology has been adopted from the engineering and aeronautical industry and is an invaluable tool for the documentation of objects within museum collections (La Pensée, 2008). The datasets created via close range laser scanning are extremely accurate and the created 3D dataset allows for a more detailed analysis in comparison to other documentation technologies such as photography. The dataset can be used for a range of different applications including: documentation; archiving; surface monitoring; replication; gallery interactives; educational sessions; conservation and visualization. However, the novel nature of a 3D dataset is presenting a rather unique challenge with respect to its sharing and dissemination. This is in part due to the need for specialised 3D software and a supported graphics card to display high resolution 3D models. This can be detrimental to one of the main goals of cultural institutions, which is to share knowledge and enable activities such as research, education and entertainment. This has limited the presentation of 3D models of cultural heritage objects to mainly either images or videos. Yet with recent developments in computer graphics, increased internet speed and emerging technologies such as Adobe's Stage 3D (Adobe, 2013) and WebGL (Khronos, 2013), it is now possible to share a dataset directly within a webpage. This allows website visitors to interact with the 3D dataset allowing them to explore every angle of the object, gaining an insight into its shape and nature. This can be very important considering that it is difficult to offer the same level of understanding of the object through the use of traditional mediums such as photographs and videos. Yet this presents a range of problems: this is a very novel experience and very few people have engaged with 3D objects outside of 3D software packages or games. This paper

  5. Validation of Erosion 3D in Lower Saxony - Comparison between modelled soil erosion events and results of a long term monitoring project

    Science.gov (United States)

    Bug, Jan; Mosimann, Thomas

    2013-04-01

    Since 2000 water erosion has been surveyed on 400 ha arable land in three different regions of Lower Saxony (Mosimann et al. 2009). The results of this long-term survey are used for the validation of the soil erosion models such as USLE and Erosion 3D. The validation of the physically-based model Erosion 3D (Schmidt & Werner 2000) is possible because the survey analyses the effects (soil loss, sediment yield, deposition on site) of single thunder storm events and also maps major factors of soil erosion (soil, crop, tillage). A 12.5 m Raster DEM was used to model the soil erosion events.Rainfalldata was acquired from climate stations. Soil and landuse parameters were derived from the "Parameterkatalog Sachsen"(Michael et al. 1996). During thirteen years of monitoring, high intensity storms fell less frequently than expected. High intensity rainfalls with a return period of five or ten years usually occurred during periods of maximum plant cover.Winter events were ruled out because dataon snow melt and rainfallwere not measured. The validation is therefore restricted to 80 events. The validation consists of three parts. The first part compares the spatial distribution of the mapped soil erosion with the model results. The second part calculates the difference in the amount of redistributed soil. The third part analyses off-site effects such as sediment yield and pollution of water bodies. The validation shows that the overall result of erosion 3D is quite good. Spatial hotspots of soil erosion and of off-site effects are predicted correctly in most cases. However, quantitative comparison is more problematic, because the mapping allows only the quantification of rillerosion and not of sheet erosion. So as a rule,the predicted soil loss is higher than the mapped. The prediction of rill development is also problematic. While the model is capable of predicting rills in thalwegs, the modelling of erosion in tractor tracks and headlands is more complicated. In order to

  6. Comparison of 4-kilometer and 800-meter transient PRISM climate datasets and their influence on hydrologic modeling

    Science.gov (United States)

    Stern, M. A.; Flint, A. L.; Curtis, J. A.; Flint, L. E.

    2011-12-01

    Historical climate maps in the form of gridded monthly precipitation and maximum and minimum air temperature are available at a 4-kilometer (km) and 800-meter (m) resolution from the Parameter-elevation Regressions on Independent Slopes Model (PRISM) Climate Group at Oregon State University. The PRISM climate maps include weighting functions for distance, elevation, topographic facet, atmospheric layer, orographic effectiveness, and coastal proximity. Many researchers rely on these datasets as inputs to computer models and statistical analyses that are used for making land and resource management decisions. We compared the 1970-2000 precipitation, maximum air temperature (Tmax), and minimum air temperature (Tmin) from the two datasets nationally and for California. At the national scale we averaged climate parameters by state and found variable results indicating differences between the two data sets. When comparing average precipitation data by state, the 4-km and 800-m data are strikingly similar with a mean difference of less than 0.1%. Comparisons of Tmax showed a mean difference of less than 1% except for two states, Wyoming and Idaho. Comparison of Tmin indicates greater than 1% difference with the greatest differences in California and Arkansas. For California we used the 35 Jepson Eco-region districts to provide a more detailed analysis of within-state variation. We found that the most significant differences between the datasets are in the Warner Mountains, Channel Islands, and southern Sierra Nevada Foothills. To assess accuracy differences between the two datasets, we compared the 4-km and the 800-m datasets to weather station data from the U.S. Historical Climatology Network (HCN). The 4-km and 800-m datasets were used as the climate input for a monthly water-balance model (Basin Characterization Model; BCM) of California to evaluate differences in simulated hydrologic output (recharge, runoff, and snowmelt). The 4-km BCM simulated recharge and runoff

  7. A comparison of HYSPLIT backward trajectories generated from two GDAS datasets.

    Science.gov (United States)

    Su, Lin; Yuan, Zibing; Fung, Jimmy C H; Lau, Alexis K H

    2015-02-15

    The Hybrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model is widely used to generate backward trajectories in given starting locations. However, differences exist between trajectories generated from the model with different input datasets. In this study, backward trajectories in Hong Kong in the entire year of 2011 are derived by HYSPLIT model. Two sets of Global Data Assimilation System (GDAS) output data associated with different horizontal and vertical resolutions (GDAS1 and GDAS0P5) are used as drivers in an attempt to quantify the differences between the results and discover the underlying reasons responsible for discrepancy. The results reveal that the significant differences between back trajectories generated from the two GDAS datasets can be mainly attributed to different vertical velocity calculation methods due to the absence of vertical velocity in GDAS0P5 dataset. The HYSPLIT trajectories are also sensitive to the horizontal and vertical resolutions of the input meteorological data, but to lesser extents. Results of cluster analysis indicate that when the air mass is from the north, northeast, or west with a long-to-medium range, the HYSPLIT backward trajectories are sensitive to the vertical advection calculation method and data resolution, whereas when the air mass is from the south or southwest with a long range, the trajectories are more likely to remain unchanged with the shifting of vertical velocity or data resolution. By comparing the vertical velocities with the observations and the performance in retrieving PM contributions from different directions, we conclude that GDAS1 dataset is more plausible in backward trajectory analysis in the Pearl River Delta.

  8. 3D virtuel udstilling

    DEFF Research Database (Denmark)

    Tournay, Bruno; Rüdiger, Bjarne

    2006-01-01

    3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s.......3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s....

  9. 3D Cameras: 3D Computer Vision of Wide Scope

    OpenAIRE

    May, Stefan; Pervoelz, Kai; Surmann, Hartmut

    2007-01-01

    First of all, a short comparison of range sensors and their underlying principles was given. The chapter further focused on 3D cameras. The latest innovations have given a significant improvement for the measurement accuracy, wherefore this technology has attracted attention in the robotics community. This was also the motivation for the examination in this chapter. On this account, several applications were presented, which represents common problems in the domain of autonomous robotics. For...

  10. Polar Stratospheric Clouds and heterogeneous chemistry: Comparison between a 3D-CTM with detailed online PSC microphysics and CALIPSO observations

    Science.gov (United States)

    Viscardy, Sébastien; Errera, Quentin; Pitts, Michael C.; Poole, Lamont R.; Chabrillat, Simon; Daerden, Frank

    2013-04-01

    A 3-D Chemical Transport Model (CTM), with full stratospheric chemistry and driven by the ECMWF temperature and wind fields, has been coupled to a detailed PSC microphysical model to simulate polar winters. The formation and evolution of four types of PSC particles (STS, SAT, NAT, and ice) are described through relevant microphysical processes which alter interactively the nitric acid and water vapor concentrations of the atmosphere. Each particle type is described by a binned size distribution for the number density and chemical composition. This set-up allows for detailed calculation of optical properties and surface area densities used to compute the heterogeneous reaction rates. After comparing the evolution of the stratospheric chemical structure to satellite observations, we will investigate how the model reproduces the PSC coverage detected by CALIPSO. A comparison between the model and CALIPSO optical properties will be used to discuss the PSC composition. Finally, we aim at estimating the contribution of each PSC particle type to the chlorine activation.

  11. A 3D-CTM with detailed online PSC-microphysics: analysis of the Antarctic winter 2003 by comparison with satellite observations

    Directory of Open Access Journals (Sweden)

    F. Daerden

    2007-01-01

    Full Text Available We present the first detailed microphysical simulations which are performed online within the framework of a global 3-D chemical transport model (CTM with full chemistry. The model describes the formation and evolution of four types of polar stratospheric cloud (PSC particles. Aerosol freezing and other relevant microphysical processes are treated in a full explicit way. Each particle type is described by a binned size distribution for the number density and chemical composition. This set-up allows for an accurate treatment of sedimentation and for detailed calculation of surface area densities and optical properties. Simulations are presented for the Antarctic winter of 2003 and comparisons are made to a diverse set of satellite observations (optical and chemical measurements of POAM III and MIPAS to illustrate the capabilities of the model. This study shows that a combined resolution approach where microphysical processes are simulated in coarse-grained conditions gives good results for PSC formation and its large-scale effect on the chemical environment through processes such as denitrification, dehydration and ozone loss.

  12. Commissioning and Implementation of an EPID Based IMRT QA System "Dosimetry Check" for 3D Absolute Dose Measurements and Quantitative Comparisons to MapCheck

    Science.gov (United States)

    Patel, Jalpa A.

    The software package "Dosimetry Check" by MathResolutions, LLC, provides an absolute 3D volumetric dose measurement for IMRT QA using the existing Electronic Portal Imaging Device (EPID) mounted on most linear accelerators. This package provides a feedback loop using the patient's treatment planning CT data as the phantom for dose reconstruction. The aim of this work is to study the difference between point, planar and volumetric doses with MapCheck and Dosimetry Check via the use of the EPID and the diode array respectively. Evaluating tools such as point doses at isocenter, 1-D profiles, gamma volume histograms, and dose volume histograms are used for IMRT dose comparison in three types of cases: head and neck, prostate, and lung. Dosimetry Check can be a valuable tool for IMRT QA as it uses patient specific attenuation corrections and the superiority of the EPID as compared to the MapCheck diode array. This helps reduce the uncertainty in dose for less variability in delivery and a more realistic measured vs computed dose verification system as compared to MapCheck.

  13. Post-trial anatomical frame alignment procedure for comparison of 3D joint angle measurement from magnetic/inertial measurement units and camera-based systems.

    Science.gov (United States)

    Li, Qingguo; Zhang, Jun-Tian

    2014-11-01

    Magnetic and inertial measurement units (MIMUs) have been widely used as an alternative to traditional camera-based motion capture systems for 3D joint kinematics measurement. Since these sensors do not directly measure position, a pre-trial anatomical calibration, either with the assistance of a special protocol/apparatus or with another motion capture system is required to establish the transformation matrices between the local sensor frame and the anatomical frame (AF) of each body segment on which the sensors are attached. Because the axes of AFs are often used as the rotational axes in the joint angle calculation, any difference in the AF determination will cause discrepancies in the calculated joint angles. Therefore, a direct comparison of joint angles between MIMU systems and camera-based systems is less meaningful because the calculated joint angles contain a systemic error due to the differences in the AF determination. To solve this problem a new post-trial AF alignment procedure is proposed. By correcting the AF misalignments, the joint angle differences caused by the difference in AF determination are eliminated and the remaining discrepancies are mainly from the measurement accuracy of the systems themselves. Lower limb joint angles from 30 walking trials were used to validate the effectiveness of the proposed AF alignment procedure. This technique could serve as a new means for calibrating magnetic/inertial sensor-based motion capture systems and correcting for AF misalignment in scenarios where joint angles are compared directly.

  14. Comparison between hemisphere comparison method and dipole-fitting method in tracing the anisotropic expansion of the Universe use the Union2 dataset

    CERN Document Server

    Chang, Zhe

    2014-01-01

    Type-Ia supernovae (SNe Ia) are often used as the standard candles to probe the anisotropic expansion of the Universe. In this paper, we make a comprehensive comparison between the hemisphere comparison (HC) method and dipole-fitting (DF) method in searching for the cosmological preferred direction using the Union2 dataset, a compilation of 557 well-calibrated SNe Ia. We find that the directions of the faintest SNe Ia derived from these two methods are approximately opposite. Monte Carlo simulations show that the results of the HC method strongly depend on the distribution of the data points in the sky. The coincidence that the HC method and DF method give two completely opposite directions may be due to the extremely nonuniform distribution of the Union2 dataset.

  15. A new global fAPAR and LAI dataset derived from optimal Albedo estimates: Comparison with MODIS products

    OpenAIRE

    Mathias Disney; Jan-Peter Muller; Said Kharbouche; Thomas Kaminski; Michael Voßbeck; Philip Lewis; Bernard Pinty

    2016-01-01

    We present the first comparison between new fAPAR and LAI products derived from the GlobAlbedo dataset and the widely-used MODIS fAPAR and LAI and products. The GlobAlbedo derived products are produced using a 1D two-stream radiative transfer (RT) scheme designed explicitly for global parameter retrieval from albedo, with consistency between RT model assumptions and observations, as well as with typical large-scale land surface model RT schemes. The approach does not require biome-specifi...

  16. Comparison of contrast-enhanced modified T1-weighted 3D TSE black-blood and 3D MP-RAGE sequences for the detection of cerebral metastases and brain tumours

    Energy Technology Data Exchange (ETDEWEB)

    Kammer, N.N.; Coppenrath, E.; Treitl, K.M.; Saam, T. [Ludwig-Maximilians-University Hospital Munich, Institute for Clinical Radiology, Munich (Germany); Kooijman, H. [Philips Healthcare, Hamburg (Germany); Dietrich, O. [Ludwig-Maximilians-University Hospital Munich, Josef Lissner Laboratory for Biomedical Imaging, Institute for Clinical Radiology, Munich (Germany)

    2016-06-15

    To compare a modified T1-weighted 3D TSE black-blood sequence with sub-millimetre resolution (T1-mVISTA) with a magnetization-prepared rapid gradient echo (MP-RAGE) sequence for the diagnosis of cerebral malignomas. Forty-six patients with known or suspected intracranial tumours and 15 control patients were included in this retrospective study. All patients underwent T1-mVISTA (0.75-mm isotropic resolution, 4:43 min) and MP-RAGE (0.8-mm isotropic resolution, 4:46 minutes) at 3-Tesla in random order after application of contrast agent. Two experienced radiologists determined the number of lesions. Maximum diameter, diagnostic confidence (DC), visual assessment of contrast enhancement (VCE) and CNR{sub lesion/parenchyma} were assessed for each lesion. Significantly more lesions were detected with T1-mVISTA compared to the MP-RAGE (61 vs. 36; p < 0.05). Further, DC and VCE was rated significantly higher in the T1-mVISTA (p < 0.05 and p < 0.001). Mean CNR{sub lesion/parenchyma} was twofold higher for T1-mVISTA (24.2 ± 17.5 vs. 12.7 ± 11.5, p < 0.001). The 25 lesions detected only in T1-mVISTA were significantly smaller than those detected in both sequences (4.3 ± 3.7 mm vs. 11.3 ± 10.7 mm; p < 0.01). T1-mVISTA increases the contrast of lesions significantly compared to MP-RAGE and might therefore improve detection rates of small lesions in early stages of disease. (orig.)

  17. Comparison of contrast-enhanced modified T1-weighted 3D TSE black-blood and 3D MP-RAGE sequences for the detection of cerebral metastases and brain tumours

    International Nuclear Information System (INIS)

    To compare a modified T1-weighted 3D TSE black-blood sequence with sub-millimetre resolution (T1-mVISTA) with a magnetization-prepared rapid gradient echo (MP-RAGE) sequence for the diagnosis of cerebral malignomas. Forty-six patients with known or suspected intracranial tumours and 15 control patients were included in this retrospective study. All patients underwent T1-mVISTA (0.75-mm isotropic resolution, 4:43 min) and MP-RAGE (0.8-mm isotropic resolution, 4:46 minutes) at 3-Tesla in random order after application of contrast agent. Two experienced radiologists determined the number of lesions. Maximum diameter, diagnostic confidence (DC), visual assessment of contrast enhancement (VCE) and CNRlesion/parenchyma were assessed for each lesion. Significantly more lesions were detected with T1-mVISTA compared to the MP-RAGE (61 vs. 36; p < 0.05). Further, DC and VCE was rated significantly higher in the T1-mVISTA (p < 0.05 and p < 0.001). Mean CNRlesion/parenchyma was twofold higher for T1-mVISTA (24.2 ± 17.5 vs. 12.7 ± 11.5, p < 0.001). The 25 lesions detected only in T1-mVISTA were significantly smaller than those detected in both sequences (4.3 ± 3.7 mm vs. 11.3 ± 10.7 mm; p < 0.01). T1-mVISTA increases the contrast of lesions significantly compared to MP-RAGE and might therefore improve detection rates of small lesions in early stages of disease. (orig.)

  18. FIT3D: Fitting optical spectra

    Science.gov (United States)

    Sánchez, S. F.; Pérez, E.; Sánchez-Blázquez, P.; González, J. J.; Rosales-Ortega, F. F.; Cano-Díaz, M.; López-Cobá, C.; Marino, R. A.; Gil de Paz, A.; Mollá, M.; López-Sánchez, A. R.; Ascasibar, Y.; Barrera-Ballesteros, J.

    2016-09-01

    FIT3D fits optical spectra to deblend the underlying stellar population and the ionized gas, and extract physical information from each component. FIT3D is focused on the analysis of Integral Field Spectroscopy data, but is not restricted to it, and is the basis of Pipe3D, a pipeline used in the analysis of datasets like CALIFA, MaNGA, and SAMI. It can run iteratively or in an automatic way to derive the parameters of a large set of spectra.

  19. Blender 3D cookbook

    CERN Document Server

    Valenza, Enrico

    2015-01-01

    This book is aimed at the professionals that already have good 3D CGI experience with commercial packages and have now decided to try the open source Blender and want to experiment with something more complex than the average tutorials on the web. However, it's also aimed at the intermediate Blender users who simply want to go some steps further.It's taken for granted that you already know how to move inside the Blender interface, that you already have 3D modeling knowledge, and also that of basic 3D modeling and rendering concepts, for example, edge-loops, n-gons, or samples. In any case, it'

  20. Embryonic staging using a 3D virtual reality system

    NARCIS (Netherlands)

    C.M. Verwoerd-Dikkeboom (Christine); A.H.J. Koning (Anton); P.J. van der Spek (Peter); N. Exalto (Niek); R.P.M. Steegers-Theunissen (Régine)

    2008-01-01

    textabstractBACKGROUND: The aim of this study was to demonstrate that Carnegie Stages could be assigned to embryos visualized with a 3D virtual reality system. METHODS: We analysed 48 3D ultrasound scans of 19 IVF/ICSI pregnancies at 7-10 weeks' gestation. These datasets were visualized as 3D 'holog

  1. A semi-simulated EEG/EOG dataset for the comparison of EOG artifact rejection techniques.

    Science.gov (United States)

    Klados, Manousos A; Bamidis, Panagiotis D

    2016-09-01

    Artifact rejection techniques are used to recover the brain signals underlying artifactual electroencephalographic (EEG) segments. Although over the last few years many different artifact rejection techniques have been proposed (http://dx.doi.org/10.1109/JSEN.2011.2115236[1], http://dx.doi.org/10.1016/j.clinph.2006.09.003[2], http://dx.doi.org/10.3390/e16126553[3]), none has been established as a gold standard so far, because assessing their performance is difficult and subjective (http://dx.doi.org/10.1109/ITAB.2009.5394295[4], http://dx.doi.org/10.1016/j.bspc.2011.02.001[5], http://dx.doi.org/10.1007/978-3-540-89208-3_300. [6]). This limitation is mainly based on the fact that the underlying artifact-free brain signal is unknown, so there is no objective way to measure how close the retrieved signal is to the real one. This article solves the aforementioned problem by presenting a semi-simulated EEG dataset, where artifact-free EEG signals are manually contaminated with ocular artifacts, using a realistic head model. The significant part of this dataset is that it contains the pre-contamination EEG signals, so the brain signals underlying the EOG artifacts are known and thus the performance of every artifact rejection technique can be objectively assessed. PMID:27508255

  2. Role of combined DWIBS/3D-CE-T1w whole-body MRI in tumor staging: Comparison with PET-CT

    International Nuclear Information System (INIS)

    Objectives: To assess the diagnostic performance of whole-body magnetic resonance imaging (WB-MRI) by diffusion-weighted whole-body imaging with background body signal suppression (DWIBS) in malignant tumor detection and the potential diagnostic advantages in generating fused DWIBS/3D-contrast enhanced T1w (3D-CE-T1w) images. Methods: 45 cancer patients underwent 18F-FDG PET-CT and WB-MRI for staging purpose. Fused DWIBS/3D-CE T1w images were generated off-line. 3D-CE-T1w, DWIBS images alone and fused with 3D-CE T1w were compared by two readers groups for detection of primary diseases and local/distant metastases. Diagnostic performance between the three WB-MRI data sets was assessed using receiver operating characteristic (ROC) curve analysis. Imaging exams and histopathological results were used as standard of references. Results: Areas under the ROC curves of DWIBS vs. 3D-CE-T1w vs. both sequences in fused fashion were 0.97, 0.978, and 1.00, respectively. The diagnostic performance in tumor detection of fused DWIBS/3D-CE-T1w images were statistically superior to DWIBS (p < 0.001) and 3D-CE-T1w (p ≤ 0.002); while the difference between DWIBS and 3D-CE-T1w did not show statistical significance difference. Detection rates of malignancy did not differ between WB-MRI with DWIBS and 18F-FDG PET-CT. Conclusion: WB-MRI with DWIBS is to be considered as alternative tool to conventional whole-body methods for tumor staging and during follow-up in cancer patients.

  3. Role of combined DWIBS/3D-CE-T1w whole-body MRI in tumor staging: Comparison with PET-CT

    Energy Technology Data Exchange (ETDEWEB)

    Manenti, Guglielmo, E-mail: guggi@tiscali.it [Department of Diagnostic and Molecular Imaging, Interventional Radiology and Radiotherapy, University ' Tor Vergata' , PTV Foundation - Policlinic ' Tor Vergata' , Viale Oxford 81, 00133 Rome (Italy); Ciccio, Carmelo, E-mail: carmeciccio@libero.it [Department of Diagnostic and Molecular Imaging, Interventional Radiology and Radiotherapy, University ' Tor Vergata' , PTV Foundation - Policlinic ' Tor Vergata' , Viale Oxford 81, 00133 Rome (Italy); Squillaci, Ettore, E-mail: ettoresquillaci@tiscali.it [Department of Diagnostic and Molecular Imaging, Interventional Radiology and Radiotherapy, University ' Tor Vergata' , PTV Foundation - Policlinic ' Tor Vergata' , Viale Oxford 81, 00133 Rome (Italy); Strigari, Lidia, E-mail: strigari@ifo.it [Laboratory of Medical Physics and Expert Systems, Regina Elena National Cancer Institute, Via Elio Chianesi 53, 00144 Rome (Italy); Calabria, Ferdinando, E-mail: ferdinandocalabria@hotmail.it [Department of Diagnostic and Molecular Imaging, Interventional Radiology and Radiotherapy, University ' Tor Vergata' , PTV Foundation - Policlinic ' Tor Vergata' , Viale Oxford 81, 00133 Rome (Italy); Danieli, Roberta, E-mail: roberta.danieli@ptvonline.it [Department of Diagnostic and Molecular Imaging, Interventional Radiology and Radiotherapy, University ' Tor Vergata' , PTV Foundation - Policlinic ' Tor Vergata' , Viale Oxford 81, 00133 Rome (Italy); and others

    2012-08-15

    Objectives: To assess the diagnostic performance of whole-body magnetic resonance imaging (WB-MRI) by diffusion-weighted whole-body imaging with background body signal suppression (DWIBS) in malignant tumor detection and the potential diagnostic advantages in generating fused DWIBS/3D-contrast enhanced T1w (3D-CE-T1w) images. Methods: 45 cancer patients underwent 18F-FDG PET-CT and WB-MRI for staging purpose. Fused DWIBS/3D-CE T1w images were generated off-line. 3D-CE-T1w, DWIBS images alone and fused with 3D-CE T1w were compared by two readers groups for detection of primary diseases and local/distant metastases. Diagnostic performance between the three WB-MRI data sets was assessed using receiver operating characteristic (ROC) curve analysis. Imaging exams and histopathological results were used as standard of references. Results: Areas under the ROC curves of DWIBS vs. 3D-CE-T1w vs. both sequences in fused fashion were 0.97, 0.978, and 1.00, respectively. The diagnostic performance in tumor detection of fused DWIBS/3D-CE-T1w images were statistically superior to DWIBS (p < 0.001) and 3D-CE-T1w (p {<=} 0.002); while the difference between DWIBS and 3D-CE-T1w did not show statistical significance difference. Detection rates of malignancy did not differ between WB-MRI with DWIBS and 18F-FDG PET-CT. Conclusion: WB-MRI with DWIBS is to be considered as alternative tool to conventional whole-body methods for tumor staging and during follow-up in cancer patients.

  4. The End of the Cold Loneliness: 3D Comparison between Doto antarctica and a New Sympatric Species of Doto (Heterobranchia: Nudibranchia).

    Science.gov (United States)

    Moles, Juan; Wägele, Heike; Ballesteros, Manuel; Pujals, Álvaro; Uhl, Gabriele; Avila, Conxita

    2016-01-01

    Although several studies are devoted to determining the diversity of Antarctic heterobranch sea slugs, new species are still being discovered. Among nudibranchs, Doto antarctica Eliot, 1907 is the single species of this genus described from Antarctica hitherto, the type locality being the Ross Sea. Doto antarctica was described mainly using external features. During our Antarctic research on marine benthic invertebrates, we found D. antarctica in the Weddell Sea and Bouvet Island, suggesting a circumpolar distribution. Species affiliation is herein supported by molecular analyses using cytochrome c oxidase subunit I, 16S rRNA, and histone H3 markers. We redescribe D. antarctica using histology, micro-computed tomography (micro-CT), and 3D-reconstruction of the internal organs. Moreover, we describe a new, sympatric species, namely D. carinova Moles, Avila & Wägele n. sp., and provide an anatomical comparison between the two Antarctic Doto species. Egg masses in both species are also described here for the first time. We demonstrate that micro-CT is a useful tool for non-destructive anatomical description of valuable specimens. Furthermore, our high resolution micro-CT data reveal that the central nervous system of both Doto species possesses numerous accessory giant cells, suggested to be neurons herein. In addition, the phylogenetic tree of all Doto species sequenced to date suggests a scenario for the evolution of the reproductive system in this genus: bursa copulatrix seems to have been reduced and the acquisition of a distal connection of the oviduct to the nidamental glands is a synapomorphy of the Antarctic Doto species. Overall, the combination of thorough morphological and anatomical description and molecular analyses provides a comprehensive means to characterize and delineate species, thus suggesting evolutionary scenarios. PMID:27411060

  5. The End of the Cold Loneliness: 3D Comparison between Doto antarctica and a New Sympatric Species of Doto (Heterobranchia: Nudibranchia.

    Directory of Open Access Journals (Sweden)

    Juan Moles

    Full Text Available Although several studies are devoted to determining the diversity of Antarctic heterobranch sea slugs, new species are still being discovered. Among nudibranchs, Doto antarctica Eliot, 1907 is the single species of this genus described from Antarctica hitherto, the type locality being the Ross Sea. Doto antarctica was described mainly using external features. During our Antarctic research on marine benthic invertebrates, we found D. antarctica in the Weddell Sea and Bouvet Island, suggesting a circumpolar distribution. Species affiliation is herein supported by molecular analyses using cytochrome c oxidase subunit I, 16S rRNA, and histone H3 markers. We redescribe D. antarctica using histology, micro-computed tomography (micro-CT, and 3D-reconstruction of the internal organs. Moreover, we describe a new, sympatric species, namely D. carinova Moles, Avila & Wägele n. sp., and provide an anatomical comparison between the two Antarctic Doto species. Egg masses in both species are also described here for the first time. We demonstrate that micro-CT is a useful tool for non-destructive anatomical description of valuable specimens. Furthermore, our high resolution micro-CT data reveal that the central nervous system of both Doto species possesses numerous accessory giant cells, suggested to be neurons herein. In addition, the phylogenetic tree of all Doto species sequenced to date suggests a scenario for the evolution of the reproductive system in this genus: bursa copulatrix seems to have been reduced and the acquisition of a distal connection of the oviduct to the nidamental glands is a synapomorphy of the Antarctic Doto species. Overall, the combination of thorough morphological and anatomical description and molecular analyses provides a comprehensive means to characterize and delineate species, thus suggesting evolutionary scenarios.

  6. A comparison of atmospheric temperature over China between radiosonde observations and multiple reanalysis datasets

    Science.gov (United States)

    Guo, Yanjun; Zhang, Siqi; Yan, Jinghui; Chen, Zhe; Ruan, Xin

    2016-04-01

    The quality controlled (RAW) and homogenized (ADJ) radiosonde temperatures within 850-30 hPa collected at 118 stations in China are compared, on a monthly mean basis, with the temperatures extracted from 8 reanalysis datasets (REA) including NCEP-1, NCEP-2, ERA-40 (ECMWF 45-yr Reanalysis), ERA-Interim, JRA-55 (Japanese 55-yr Reanalysis), 20CR (20th Century Reanalysis), MERRA (Modern Era Retrospective-Analysis), and CFSR (Climate Forecast System Reanalysis). Average differences, correlations, standard deviations, and linear trends among RAW, ADJ, and REA for the period 1981-2010 are analyzed. The results reveal significant inhomogeneity in the time series of RAW radiosonde temperature in China; an overall negative adjustment was thus employed to obtain the ADJ temperatures, and the effect of the negative adjustment is the most significant within 200-100 hPa. Such a homogenization process has removed the system errors in RAW, possibly caused by radiosonde instrument changes and observation system upgrades. Hence, the correlation is higher between ADJ and REA than that between RAW and REA. The mean difference between ADJ and REA is about 1℃ during 1981-2010, while REA are mostly cooler in the troposphere and warmer in the stratosphere than ADJ; nonetheless, they have a significant high and positive correlation and their annual variability is notably consistent. Furthermore, the linear trends in REA and ADJ both demonstrate warming in the lower-mid troposphere and cooling in the mid stratosphere, with large uncertainties found in the upper troposphere and lower stratosphere. In general, ERA-Interim, JRA-55, and MERRA are more consistent with ADJ than other reanalysis datasets.

  7. Impact of automatization in temperature series in Spain and comparison with the POST-AWS dataset

    Science.gov (United States)

    Aguilar, Enric; López-Díaz, José Antonio; Prohom Duran, Marc; Gilabert, Alba; Luna Rico, Yolanda; Venema, Victor; Auchmann, Renate; Stepanek, Petr; Brandsma, Theo

    2016-04-01

    Climate data records are most of the times affected by inhomogeneities. Especially inhomogeneities introducing network-wide biases are sometimes related to changes happening almost simultaneously in an entire network. Relative homogenization is difficult in these cases, especially at the daily scale. A good example of this is the substitution of manual observations (MAN) by automatic weather stations (AWS). Parallel measurements (i.e. records taken at the same time with the old (MAN) and new (AWS) sensors can provide an idea of the bias introduced and help to evaluate the suitability of different correction approaches. We present here a quality controlled dataset compiled under the DAAMEC Project, comprising 46 stations across Spain and over 85,000 parallel measurements (AWS-MAN) of daily maximum and minimum temperature. We study the differences between both sensors and compare it with the available metadata to account for internal inhomogeneities. The differences between both systems vary much across stations, with patterns more related to their particular settings than to climatic/geographical reasons. The typical median biases (AWS-MAN) by station (comprised between the interquartile range) oscillate between -0.2°C and 0.4 in daily maximum temperature and between -0.4°C and 0.2°C in daily minimum temperature. These and other results are compared with a larger network, the Parallel Observations Scientific Team, a working group of the International Surface Temperatures Initiative (ISTI-POST) dataset, which comprises our stations, as well as others from different countries in America, Asia and Europe.

  8. Comparison of dynamic 2D and 3D brain PET for kinetic analysis of C-11 win 35,428 binding to dopamine transporters

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Sang Eun; Choi, Joon Young; Choi, Yong; Kim, Joon Young; Choe, Yearn Seong; Oh, Seung Jun; Kim, Byung Tae [College of Medicine, Sungkyunkwan Univ., Seoul (Korea, Republic of)

    1998-07-01

    3D PET data acquisition is now being used for clinical FDG-PET brain studies. However, its validity for studying kinetics of receptor-ligand interaction has not been fully evaluated. To examine the feasibility and quantitative accuracy of dynamic 3D brain PET for kinetic analysis of radioligand binding, 4 healthy volunteers and 1 Parkinson's disease patient were studied. Each subject received two 555 MBq C-11 WIN 35,428 injections and a dynamic sequence of 31 scans were acquired until 90 min p.i. in 2D and 3D mode using a GE Advance PET scanner. Both 2D and 3D image sets were reconstructed employing a Hanning filter 4.5 mm and resulting axial resolution was about 7 mm for both 2D and 3D images. The 3D data were corrected for scatter employing a method using 2D fitted Gaussian functions. Attenuation correction was performed using a 20 min transmission scan. Tissue time-activity curves were generated in the striatum and cerebellum. The forward (k3) and dissociation (k4) rate constants were calculated in the striatum using a two-compartment model, which consists of free plus nonspecifically bound (cerebellar) and specifically bound (striatal-cerebellar) compartments. The 3D kinetic results were comparable to the 2D results and within the expected range. The 3D %SE was less than 2D %SE. Striatal-to-cerebellar ratios from 2D and 3D images showed excellent correlation and agreement (r=0.994, p<0.0001, slope=0.952). The plot of striatal-to-cerebellar ratios versus time showed a linearly increasing pattern, with significantly lower RMSE in 3D than in 2D studies in linear regression analysis (0.119{+-}0.025 vs. 0.276{+-}0.087, p=0.028). These preliminary data suggest that 3D PET provides more reliable tissue kinetic data for the analysis of C-11 WIN 35,428 kinetics. Improved sensitivity in 3D may allow more accurate receptor characterization, especially in small brain structures or in low specific binding areas.

  9. Techniques and architectures for 3D interaction

    NARCIS (Netherlands)

    De Haan, G.

    2009-01-01

    Spatial scientific datasets are all around us, and 3D visualization is a powerful tool to explore details and structures within them. When dealing with complex spatial structures, interactive Virtual Reality (VR) systems can potentially improve exploration over desktop-based systems. However, from p

  10. Tangential beam IMRT versus tangential beam 3D-CRT of the chest wall in postmastectomy breast cancer patients: A dosimetric comparison

    OpenAIRE

    AI-Yahya Khaled; Mohamed Adel; Aziz Alaradi Abdul; Rudat Volker; Altuwaijri Saleh

    2011-01-01

    Abstract Background This study evaluates the dose distribution of reversed planned tangential beam intensity modulated radiotherapy (IMRT) compared to standard wedged tangential beam three-dimensionally planned conformal radiotherapy (3D-CRT) of the chest wall in unselected postmastectomy breast cancer patients Methods For 20 unselected subsequent postmastectomy breast cancer patients tangential beam IMRT and tangential beam 3D-CRT plans were generated for the radiotherapy of the chest wall. ...

  11. The advantage of 3D conformal treatment of lumbar spine metastases in comparison to traditional PA or AP-PA techniques: restoring an intermediate niche of therapeutic sophistication

    International Nuclear Information System (INIS)

    To evaluate the effect of the 3D radiation field design on normal tissues compared with commonly used appositional fields in patients with lumbar spine metastases. Ten comparative treatment plans for radiation of lumbar spine metastases were compared for posterior and anterior- posterior fields with 3D plans. The PTV coverage in all comparative plans was similar. V 15 of the bowel in 3D, AP-PA and PA plans was 6.7 Gy (SD 6.47), 39.8 Gy (SD 11.4) and 37.3 Gy (SD15.7), respectively (p < 0.0001). The mean dose to both kidneys was 9.6 Gy (SD 4.8), 4.1 Gy (SD 3.9) and 4.6 Gy (SD 4.4) for appropriate plans (p = 0.002). Maximal dose to the spinal cord was 30.6 Gy (SD 2.1), 33.1 Gy (SD 9.8) and 37.7 Gy (SD 2) for 3D, AP-PA and PA plans. 3D conformal treatment planning of lumbar vertebral metastases was significantly better in term of bowel and spinal cord exposure compared to AP-PA and PA techniques. The exposure of the kidneys in 3D plans, while greater than in the comparative plans, did not violate accepted dose-volume thresholds

  12. IMRT and 3D conformal radiotherapy with or without elective nodal irradiation in locally advanced NSCLC. A direct comparison of PET-based treatment planning

    Energy Technology Data Exchange (ETDEWEB)

    Fleckenstein, Jochen; Kremp, Katharina; Kremp, Stephanie; Palm, Jan; Ruebe, Christian [Saarland University Medical School, Department of Radiotherapy and Radiation Oncology, Homburg/Saar (Germany)

    2016-02-15

    The potential of intensity-modulated radiation therapy (IMRT) as opposed to three-dimensional conformal radiotherapy (3D-CRT) is analyzed for two different concepts of fluorodeoxyglucose positron emission tomography (FDG PET)-based target volume delineation in locally advanced non-small cell lung cancer (LA-NSCLC): involved-field radiotherapy (IF-RT) vs. elective nodal irradiation (ENI). Treatment planning was performed for 41 patients with LA-NSCLC, using four different planning approaches (3D-CRT-IF, 3D-CRT-ENI, IMRT-IF, IMRT-ENI). ENI included a boost irradiation after 50 Gy. For each plan, maximum dose escalation was calculated based on prespecified normal tissue constraints. The maximum prescription dose (PD), tumor control probability (TCP), conformal indices (CI), and normal tissue complication probabilities (NTCP) were analyzed. IMRT resulted in statistically significant higher prescription doses for both target volume concepts as compared with 3D-CRT (ENI: 68.4 vs. 60.9 Gy, p < 0.001; IF: 74.3 vs. 70.1 Gy, p < 0.03). With IMRT-IF, a PD of at least 66 Gy was achieved for 95 % of all plans. For IF as compared with ENI, there was a considerable theoretical increase in TCP (IMRT: 27.3 vs. 17.7 %, p < 0.00001; 3D-CRT: 20.2 vs. 9.9 %, p < 0.00001). The esophageal NTCP showed a particularly good sparing with IMRT vs. 3D-CRT (ENI: 12.3 vs. 30.9 % p < 0.0001; IF: 15.9 vs. 24.1 %; p < 0.001). The IMRT technique and IF target volume delineation allow a significant dose escalation and an increase in TCP. IMRT results in an improved sparing of OARs as compared with 3D-CRT at equivalent dose levels. (orig.) [German] Das Potenzial der intensitaetsmodulierten Strahlentherapie (IMRT) soll im Rahmen der FDG-PET basierten Bestrahlungsplanung des lokal fortgeschrittenen nichtkleinzelligen Bronchialkarzinoms (LA-NSCLC) fuer 2 Zielvolumenansaetze (Involved-Field-Bestrahlung, IF) sowie elektive Nodalbestrahlung (ENI) geprueft und mit der 3-D-konformalen Strahlentherapie (3-D

  13. Radiochromic 3D Detectors

    Science.gov (United States)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  14. 3D Projection Installations

    DEFF Research Database (Denmark)

    Halskov, Kim; Johansen, Stine Liv; Bach Mikkelsen, Michelle

    2014-01-01

    Three-dimensional projection installations are particular kinds of augmented spaces in which a digital 3-D model is projected onto a physical three-dimensional object, thereby fusing the digital content and the physical object. Based on interaction design research and media studies, this article...... contributes to the understanding of the distinctive characteristics of such a new medium, and identifies three strategies for designing 3-D projection installations: establishing space; interplay between the digital and the physical; and transformation of materiality. The principal empirical case, From...... Fingerplan to Loop City, is a 3-D projection installation presenting the history and future of city planning for the Copenhagen area in Denmark. The installation was presented as part of the 12th Architecture Biennale in Venice in 2010....

  15. Midsagittal plane extraction from brain images based on 3D SIFT

    International Nuclear Information System (INIS)

    Midsagittal plane (MSP) extraction from 3D brain images is considered as a promising technique for human brain symmetry analysis. In this paper, we present a fast and robust MSP extraction method based on 3D scale-invariant feature transform (SIFT). Unlike the existing brain MSP extraction methods, which mainly rely on the gray similarity, 3D edge registration or parameterized surface matching to determine the fissure plane, our proposed method is based on distinctive 3D SIFT features, in which the fissure plane is determined by parallel 3D SIFT matching and iterative least-median of squares plane regression. By considering the relative scales, orientations and flipped descriptors between two 3D SIFT features, we propose a novel metric to measure the symmetry magnitude for 3D SIFT features. By clustering and indexing the extracted SIFT features using a k-dimensional tree (KD-tree) implemented on graphics processing units, we can match multiple pairs of 3D SIFT features in parallel and solve the optimal MSP on-the-fly. The proposed method is evaluated by synthetic and in vivo datasets, of normal and pathological cases, and validated by comparisons with the state-of-the-art methods. Experimental results demonstrated that our method has achieved a real-time performance with better accuracy yielding an average yaw angle error below 0.91° and an average roll angle error no more than 0.89°. (paper)

  16. Herramientas SIG 3D

    Directory of Open Access Journals (Sweden)

    Francisco R. Feito Higueruela

    2010-04-01

    Full Text Available Applications of Geographical Information Systems on several Archeology fields have been increasing during the last years. Recent avances in these technologies make possible to work with more realistic 3D models. In this paper we introduce a new paradigm for this system, the GIS Thetrahedron, in which we define the fundamental elements of GIS, in order to provide a better understanding of their capabilities. At the same time the basic 3D characteristics of some comercial and open source software are described, as well as the application to some samples on archeological researchs

  17. TOWARDS: 3D INTERNET

    OpenAIRE

    Ms. Swapnali R. Ghadge

    2013-01-01

    In today’s ever-shifting media landscape, it can be a complex task to find effective ways to reach your desired audience. As traditional media such as television continue to lose audience share, one venue in particular stands out for its ability to attract highly motivated audiences and for its tremendous growth potential the 3D Internet. The concept of '3D Internet' has recently come into the spotlight in the R&D arena, catching the attention of many people, and leading to a lot o...

  18. Bootstrapping 3D fermions

    Science.gov (United States)

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-01

    We study the conformal bootstrap for a 4-point function of fermions in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  19. Interaktiv 3D design

    DEFF Research Database (Denmark)

    Villaume, René Domine; Ørstrup, Finn Rude

    2002-01-01

    Projektet undersøger potentialet for interaktiv 3D design via Internettet. Arkitekt Jørn Utzons projekt til Espansiva blev udviklet som et byggesystem med det mål, at kunne skabe mangfoldige planmuligheder og mangfoldige facade- og rumudformninger. Systemets bygningskomponenter er digitaliseret som...... 3D elementer og gjort tilgængelige. Via Internettet er det nu muligt at sammenstille og afprøve en uendelig  række bygningstyper som  systemet blev tænkt og udviklet til....

  20. Comparison of 3D turbo spin-echo SPACE sequences with conventional 2D MRI sequences to assess the shoulder joint

    International Nuclear Information System (INIS)

    Highlights: • 3D SPACE and conventional 2D TSE MRI for assessment of the shoulder joint were compared. • Concordance for most pathologys was substantial to almost perfect. • Examination time could be reduced up to 8 min (27%). • Regarding rotator cuff injuries an additional sagittal T2w TSE sequence in 3D protocol is recommended. - Abstract: Purpose: To determine the accuracy and reliability of three-dimensional (3D) T1- and proton density (PD)-weighted turbo spin-echo (TSE) sampling perfection with application-optimized contrasts using different flip-angle evolution (SPACE) compared with conventional 2D sequences in assessment of the shoulder-joint. Materials and methods: Ninety-three subjects were examined on a 3-T MRI system with both conventional 2D-TSE sequences in T1-, T2- and PD-weighting and 3D SPACE sequences in T1- and PD-weighting. All examinations were assessed independently by two reviewers for common pathologies of the shoulder-joint. Agreement between 2D- and 3D-sequences and inter-observer-agreement was evaluated using kappa-statistics. Results: Using conventional 2D TSE sequences as standard of reference, sensitivity, specificity, and accuracy values of 3D SPACE were 81.8%, 95.1%, and 93.5% for injuries of the supraspinatus-tendon (SSP), 81.3%, 93.5%, and 91.4% for the cartilage layer and 82.4%, 98.5%, and 97.5% for the long biceps tendon. Concordance between 2D and 3D was almost perfect for tendinopathies of the SSP (κ = 0.85), osteoarthritis (κ = 1), luxation of the biceps tendon (κ = 1) and adjacent bone marrow (κ = 0.92). Inter-observer-agreement was generally higher for conventional 2D TSE sequences (κ, 0.23–1.0), when compared to 3D SPACE sequences (κ, −0.33 to 1.0) except for disorders of the long biceps tendon and supraspinatus tendon rupture. Conclusion: Because of substantial and almost perfect concordance with conventional 2D TSE sequences for common shoulder pathologies, MRI examination-time can be reduced by nearly 40

  1. Comparison of 3D turbo spin-echo SPACE sequences with conventional 2D MRI sequences to assess the shoulder joint

    Energy Technology Data Exchange (ETDEWEB)

    Kloth, Jost Karsten, E-mail: jost.kloth@med.uni-heidelberg.de [Diagnostic and Interventional Radiology, University Hospital Heidelberg, Im Neuenheimer Feld 110, D-69120 Heidelberg (Germany); Winterstein, Marianne, E-mail: marianne.winterstein@med.uni-heidelberg.de [Diagnostic and Interventional Radiology, University Hospital Heidelberg, Im Neuenheimer Feld 110, D-69120 Heidelberg (Germany); Akbar, Michael, E-mail: michael.akbar@med.uni-heidelberg.de [Orthopedic and Trauma Surgery, University Hospital Heidelberg, Schlierbacher Landstraße 200a, D-69118 Heidelberg (Germany); Meyer, Esther, E-mail: esther.meyer@siemens.com [Siemens Healthcare, Erlangen (Germany); Paul, Dominik, E-mail: dominik.paul@siemens.com [Siemens Healthcare, Erlangen (Germany); Kauczor, Haus-Ulrich, E-mail: hans-ulrich.kauczor@med.uni-heidelberg.de [Diagnostic and Interventional Radiology, University Hospital Heidelberg, Im Neuenheimer Feld 110, D-69120 Heidelberg (Germany); Weber, Marc-André, E-mail: marcandre.weber@med.uni-heidelberg.de [Diagnostic and Interventional Radiology, University Hospital Heidelberg, Im Neuenheimer Feld 110, D-69120 Heidelberg (Germany)

    2014-10-15

    Highlights: • 3D SPACE and conventional 2D TSE MRI for assessment of the shoulder joint were compared. • Concordance for most pathologys was substantial to almost perfect. • Examination time could be reduced up to 8 min (27%). • Regarding rotator cuff injuries an additional sagittal T2w TSE sequence in 3D protocol is recommended. - Abstract: Purpose: To determine the accuracy and reliability of three-dimensional (3D) T1- and proton density (PD)-weighted turbo spin-echo (TSE) sampling perfection with application-optimized contrasts using different flip-angle evolution (SPACE) compared with conventional 2D sequences in assessment of the shoulder-joint. Materials and methods: Ninety-three subjects were examined on a 3-T MRI system with both conventional 2D-TSE sequences in T1-, T2- and PD-weighting and 3D SPACE sequences in T1- and PD-weighting. All examinations were assessed independently by two reviewers for common pathologies of the shoulder-joint. Agreement between 2D- and 3D-sequences and inter-observer-agreement was evaluated using kappa-statistics. Results: Using conventional 2D TSE sequences as standard of reference, sensitivity, specificity, and accuracy values of 3D SPACE were 81.8%, 95.1%, and 93.5% for injuries of the supraspinatus-tendon (SSP), 81.3%, 93.5%, and 91.4% for the cartilage layer and 82.4%, 98.5%, and 97.5% for the long biceps tendon. Concordance between 2D and 3D was almost perfect for tendinopathies of the SSP (κ = 0.85), osteoarthritis (κ = 1), luxation of the biceps tendon (κ = 1) and adjacent bone marrow (κ = 0.92). Inter-observer-agreement was generally higher for conventional 2D TSE sequences (κ, 0.23–1.0), when compared to 3D SPACE sequences (κ, −0.33 to 1.0) except for disorders of the long biceps tendon and supraspinatus tendon rupture. Conclusion: Because of substantial and almost perfect concordance with conventional 2D TSE sequences for common shoulder pathologies, MRI examination-time can be reduced by nearly 40

  2. Volumetric modulated arc planning for lung stereotactic body radiotherapy using conventional and unflattened photon beams: a dosimetric comparison with 3D technique

    International Nuclear Information System (INIS)

    Frequently, three-dimensional (3D) conformal beams are used in lung cancer stereotactic body radiotherapy (SBRT). Recently, volumetric modulated arc therapy (VMAT) was introduced as a new treatment modality. VMAT techniques shorten delivery time, reducing the possibility of intrafraction target motion. However dose distributions can be quite different from standard 3D therapy. This study quantifies those differences, with focus on VMAT plans using unflattened photon beams. A total of 15 lung cancer patients previously treated with 3D or VMAT SBRT were randomly selected. For each patient, non-coplanar 3D, coplanar and non-coplanar VMAT and flattening filter free VMAT (FFF-VMAT) plans were generated to meet the same objectives with 50 Gy covering 95% of the PTV. Two dynamic arcs were used in each VMAT plan. The couch was set at ± 5° to the 0° straight position for the two non-coplanar arcs. Pinnacle version 9.0 (Philips Radiation Oncology, Fitchburg WI) treatment planning system with VMAT capabilities was used. We analyzed the conformity index (CI), which is the ratio of the total volume receiving at least the prescription dose to the target volume receiving at least the prescription dose; the conformity number (CN) which is the ratio of the target coverage to CI; and the gradient index (GI) which is the ratio of the volume of 50% of the prescription isodose to the volume of the prescription isodose; as well as the V20, V5, and mean lung dose (MLD). Paired non-parametric analysis of variance tests with post-tests were performed to examine the statistical significance of the differences of the dosimetric indices. Dosimetric indices CI, CN and MLD all show statistically significant improvement for all studied VMAT techniques compared with 3D plans (p < 0.05). V5 and V20 show statistically significant improvement for the FFF-VMAT plans compared with 3D (p < 0.001). GI is improved for the FFF-VMAT and the non-coplanar VMAT plans (p < 0.01 and p < 0.05 respectively

  3. MR Imaging of Prostate Cancer: Diffusion Weighted Imaging and (3D Hydrogen 1 (1H MR Spectroscopy in Comparison with Histology

    Directory of Open Access Journals (Sweden)

    J. Yamamura

    2011-01-01

    Full Text Available Purpose. To evaluate retrospectively the impact of diffusion weighted imaging (DWI and (3D hydrogen 1 (1H MR-spectroscopy (MRS on the detection of prostatic cancer in comparison to histological examinations. Materials and Methods: 50 patients with suspicion of prostate cancer underwent a MRI examination at a 1.5T scanner. The prostate was divided into sextants. Regions of interest were placed in each sextant to evaluate the apparent diffusion coefficient (ADC-values. The results of the DWI as well as MRS were compared retrospectively with the findings of the histological examination. Sensitivity and specificity of ADC and metabolic ratio (MET—both separately and in combination—for identification of tumor tissue was computed for variable discrimination thresholds to evaluate its receiver operator characteristic (ROC. An association between ADC, MET and Gleason score was tested by the non-parametric Spearman -test. Results. The average ADC-value was 1.65±0.32mm2/s × 10-3 in normal tissue and 0.96±0.24 mm2/s × 10-3 in tumor tissue (mean ± 1 SD. MET was 0.418±0.431 in normal tissue and 2.010±1.649 in tumor tissue. The area under the ROC curve was 0.966 (95%-confidence interval 0.941–0.991 and 0.943 (0.918–0.968 for DWI and MRS, respectively. There was a highly significant negative correlation between ADC-value and the Gleason score in the tumor-positive tissue probes (=62, =−0.405, =.001. MRS did not show a significant correlation with the Gleason score (=0.117, =.366. By using both the DWI and MRS, the regression model provided sensitivity and specificity for detection of tumor of 91.9% and 98.3%, respectively. Conclusion. The results of our study showed that both DWI and MRS should be considered as an additional and complementary tool to the T2-weighted MRI for detecting prostate cancer.

  4. MR Imaging of Prostate Cancer: Diffusion Weighted Imaging and (3D) Hydrogen 1 (1H) MR Spectroscopy in Comparison with Histology

    International Nuclear Information System (INIS)

    Purpose. To evaluate retrospectively the impact of diffusion weighted imaging (DWI) and (3D) hydrogen 1 (1H) MR-spectroscopy (MRS) on the detection of prostatic cancer in comparison to histological examinations. Materials and Methods: 50 patients with suspicion of prostate cancer underwent a MRI examination at a 1.5T scanner. The prostate was divided into sextants. Regions of interest were placed in each sextant to evaluate the apparent diffusion coefficient (ADC)-values. The results of the DWI as well as MRS were compared retrospectively with the findings of the histological examination. Sensitivity and specificity of ADC and metabolic ratio (MET)—both separately and in combination—for identification of tumor tissue was computed for variable discrimination thresholds to evaluate its receiver operator characteristic (ROC). An association between ADC, MET and Gleason score was tested by the non-parametric Spearman ρ-test. Results. The average ADC-value was 1.65 ± 0.32mm2/s × 10−3 in normal tissue and 0.96±0.24 mm2/s × 10−3 in tumor tissue (mean ± 1 SD). MET was 0.418 ± 0.431 in normal tissue and 2.010 ± 1.649 in tumor tissue. The area under the ROC curve was 0.966 (95%-confidence interval 0.941–0.991) and 0.943 (0.918–0.968) for DWI and MRS, respectively. There was a highly significant negative correlation between ADC-value and the Gleason score in the tumor-positive tissue probes (n = 62, ρ = −0.405, P = .001). MRS did not show a significant correlation with the Gleason score (ρ = 0.117, P = .366). By using both the DWI and MRS, the regression model provided sensitivity and specificity for detection of tumor of 91.9% and 98.3%, respectively. Conclusion. The results of our study showed that both DWI and MRS should be considered as an additional and complementary tool to the T2-weighted MRI for detecting prostate cancer

  5. A New Promising Technique of 3D Isovoxel Imaging Using 3T MRI in the Wrist: Comparison with 3T MR Arthrography

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Guen Young; Kim, Baek Hyun; Park, Jong Woong [Korea University Ansan Hospital, Korea University College of Medicine, Ansan (Korea, Republic of)

    2011-02-15

    We wanted to evaluate the usefulness of 3D isovoxel MR imaging using 3T MRI in the wrist joint, as compared with 3T MR arthrography. A total of 33 patients underwent both MR arthrography and 3D isovoxel imaging of the wrist joints using 3T MR, including 11 patients with arthroscopic confirmation. 3D isovoxel MR imaging was performed using an intermediateweighted fast spin echo coronal scan with a 0.4-mm slice thickness and the axial images were reconstructed with a 1-mm slice thickness. One radiologist evaluated for the presence of scapholunate or lunotriquetral ligament tear and she determined the grade of the triangular fibrocartilage complex tear and chondromalacia with its location. We compared the two examinations using kappa values. The rates of detecting wrist injury were similar for both exams with substantial to almost perfect inter-examination agreement (kappa value = 0.864 for scapholunate ligament tear, 0.835 for lunotriquetral ligament tear, 0.799 for TFCC tear and 0.940 for chondromalacia). For the eleven cases that underwent arthroscopy, their results of 3D isovoxel MRI were also similar to that of MR arthrography. 3D isovoxel MR imaging is useful for the evaluation of the wrist joint

  6. Comparison of 2-D turbo spin echo and 3-D gradient echo sequences for the detection of the trigeminal nerve and branches anatomy

    International Nuclear Information System (INIS)

    The aim of this study was to assess the detectability of the trigeminal nerve and its branches using T1 weighted (w.) 3-D magnetization prepared rapid gradient echo (MP-RAGE), T2* w. 3D CISS and T2 w. 2-D turbo spin echo MR sequences. Thirty healthy volunteers were examined for this purpose using a 1.5 Tesla MR unit. The detectability of the trigeminal nerve and Gasser's Ganglion, i.e. structures that are surrounded by liquor was best using 3-D CISS. In the case of the ophthalmic, maxillary and mandibular nerves, the T1 w. 3-D MPRAGE was significantly better than T2* w. CISS and T2 w. 2-D turbo spin echo. The latter yielded the poorest results. We conclude that both high resolution T2* w. and T1 w. 3-D sequences are necessary in order to detect the liquor-surrounded trigeminal nerve and its soft tissue-surrounded branches. We would therefore recommend the inclusion of constructive interference in steady state (CISS) and MP-RAGE in a MR imaging protocol of the trigeminal nerve and its branches

  7. Tangible 3D Modelling

    DEFF Research Database (Denmark)

    Hejlesen, Aske K.; Ovesen, Nis

    2012-01-01

    This paper presents an experimental approach to teaching 3D modelling techniques in an Industrial Design programme. The approach includes the use of tangible free form models as tools for improving the overall learning. The paper is based on lecturer and student experiences obtained through facil...

  8. 3D Harmonic Echocardiography:

    NARCIS (Netherlands)

    M.M. Voormolen

    2007-01-01

    textabstractThree dimensional (3D) echocardiography has recently developed from an experimental technique in the ’90 towards an imaging modality for the daily clinical practice. This dissertation describes the considerations, implementation, validation and clinical application of a unique

  9. PubChem3D: Biologically relevant 3-D similarity

    Directory of Open Access Journals (Sweden)

    Kim Sunghwan

    2011-07-01

    Full Text Available Abstract Background The use of 3-D similarity techniques in the analysis of biological data and virtual screening is pervasive, but what is a biologically meaningful 3-D similarity value? Can one find statistically significant separation between "active/active" and "active/inactive" spaces? These questions are explored using 734,486 biologically tested chemical structures, 1,389 biological assay data sets, and six different 3-D similarity types utilized by PubChem analysis tools. Results The similarity value distributions of 269.7 billion unique conformer pairs from 734,486 biologically tested compounds (all-against-all from PubChem were utilized to help work towards an answer to the question: what is a biologically meaningful 3-D similarity score? The average and standard deviation for the six similarity measures STST-opt, CTST-opt, ComboTST-opt, STCT-opt, CTCT-opt, and ComboTCT-opt were 0.54 ± 0.10, 0.07 ± 0.05, 0.62 ± 0.13, 0.41 ± 0.11, 0.18 ± 0.06, and 0.59 ± 0.14, respectively. Considering that this random distribution of biologically tested compounds was constructed using a single theoretical conformer per compound (the "default" conformer provided by PubChem, further study may be necessary using multiple diverse conformers per compound; however, given the breadth of the compound set, the single conformer per compound results may still apply to the case of multi-conformer per compound 3-D similarity value distributions. As such, this work is a critical step, covering a very wide corpus of chemical structures and biological assays, creating a statistical framework to build upon. The second part of this study explored the question of whether it was possible to realize a statistically meaningful 3-D similarity value separation between reputed biological assay "inactives" and "actives". Using the terminology of noninactive-noninactive (NN pairs and the noninactive-inactive (NI pairs to represent comparison of the "active/active" and

  10. Feasibility and evaluation of dual-source transmit 3D imaging of the orbits: Comparison to high-resolution conventional MRI at 3T

    Energy Technology Data Exchange (ETDEWEB)

    Seeger, Achim, E-mail: achim.seeger@gmx.de [Department of Diagnostic and Interventional Neuroradiology, Eberhard-Karls-University, Hoppe-Seyler-Str. 3, Tübingen 72076 (Germany); Schulze, Maximilian, E-mail: maximilian.schulze@med.uni-tuebingen.de [Department of Diagnostic and Interventional Neuroradiology, Eberhard-Karls-University, Hoppe-Seyler-Str. 3, Tübingen 72076 (Germany); Schuettauf, Frank, E-mail: fschuettauf@uni-tuebingen.de [University Eye Hospital, Department of Ophthalmology, Eberhard-Karls-University, Schleichstrasse 12, Tübingen 72076 (Germany); Klose, Uwe, E-mail: uwe.klose@med.uni-tuebingen.de [Department of Diagnostic and Interventional Neuroradiology, Eberhard-Karls-University, Hoppe-Seyler-Str. 3, Tübingen 72076 (Germany); Ernemann, Ulrike, E-mail: ulrike.ernemann@med.uni-tuebingen.de [Department of Diagnostic and Interventional Neuroradiology, Eberhard-Karls-University, Hoppe-Seyler-Str. 3, Tübingen 72076 (Germany); Hauser, Till-Karsten, E-mail: till-karsten.hauser@med.uni-tuebingen.de [Department of Diagnostic and Interventional Neuroradiology, Eberhard-Karls-University, Hoppe-Seyler-Str. 3, Tübingen 72076 (Germany)

    2015-06-15

    Highlights: • Reduced FOV imaging enables a 3D approach for a very fast assessment of the orbits. • Conventional MRI exhibited higher eSNR values and consecutively higher scores for overall image quality in the subjective readers’ analysis. • All pathologies could be detected compared to high-resolution conventional MRI making 3D pTX SPACE to a potential alternative and fast imaging technique. - Abstract: Purpose: To prospectively compare the image quality and diagnostic performance of orbital MR images obtained by using a dual-source parallel transmission (pTX) 3D sequence (Sampling Perfection with Application optimized Contrasts using different flip angle Evolution, SPACE) with the image quality of conventional high-resolution standard protocol for clinical use in patients at 3T. Materials and methods: After obtaining institutional review board approval and patient consent, 32 patients with clinical indication for orbital MRI were examined using a high-resolution conventional sequences and 3D pTX SPACE sequences. Quantitative measurements, image quality of the healthy orbit, incidence of artifacts, and the subjective diagnostic performance to establish diagnosis was rated. Statistical significance was calculated by using a Student's t-test and nonparametric Wilcoxon signed rank test. Results: Length measurements were comparable in the two techniques, 3D pTX SPACE resulted in significant faster image acquisition with higher spatial resolution and less motion artifacts as well as better delineation of the optic nerve sheath. However, estimated contrast-to-noise and signal-to-noise and overall image quality as well as subjective scores of the conventional TSE imaging were rated significantly higher. The conventional MR sequences were the preferred techniques by the readers. Conclusion: This study demonstrates the feasibility of 3D pTX SPACE of the orbit resulting in a rapid acquisition of isotropic high-resolution images. Although no pathology was

  11. Comparison of the Aerospace Systems Test Reactor loss-of-coolant test data with predictions of the 3D-AIRLOCA code

    International Nuclear Information System (INIS)

    This paper compares the predictions of the revised 3D-AIRLOCA computer code to those data available from the Aerospace Systems Test Reactor's (ASTR's) loss-of-coolant-accident (LOCA) tests run in 1964. The theoretical and experimental hot-spot temperature responses compare remarkably well. In the thirteen cases studied, the irradiation powers varied from 0.4 to 8.87 MW; the irradiation times were 300, 1540, 1800, and 104 s. The degrees of agreement between the data and predictions provide an experimental validation of the 3D-AIRLOCA code

  12. Irradiation of head-and-neck tumors with intensity modulated radiotherapy (IMRT). Comparison between two IMRT techniques with 3D conformal irradiation

    International Nuclear Information System (INIS)

    For 12 patients with inoperable head-neck carcinoma that were treated with 3D conformal irradiation techniques additional irradiation plans using IMRT were developed. It was shown that the IMRT techniques are superior to the 3D conformal technique. The new rapid arc technique is unclear with respect to the critical organs (parotid glands, spinal canal and mandibles) but is significantly advantageous for the other normal tissue with respect to conformity (steeper dose gradients) and thus radiation dose reduction. The resulting lower irradiation time and the reduced radiation exposure being important for the treatment economy and patients' comfort should favor the more planning intensive rapid arc technique.

  13. Dose escalation in prostate radiotherapy up to 82 Gy using simultaneous integrated boost. Direct comparison of acute and late toxicity with 3D-CRT 74 Gy and IMRT 78 Gy

    Energy Technology Data Exchange (ETDEWEB)

    Dolezel, Martin; Odrazka, Karel; Vanasek, Jaroslav [Oncology Center, Multiscan and Pardubice Regional Hospital, Pardubice (Czech Republic); Vaculikova, Miloslava [Dept. of Oncology, Hospital Nachod (Czech Republic); Sefrova, Jana; Paluska, Petr; Zouhar, Milan; Jansa, Jan; Macingova, Zuzana; Jarosova, Lida [Dept. of Oncology and Radiotherapy, Univ. Hospital Hradec Kralove (Czech Republic); Brodak, Milos; Moravek, Petr [Dept. of Urology, Univ. Hospital Hradec Kralove (Czech Republic); Hartmann, Igor [Dept. of Urology, Univ. Hospital Olomouc (Czech Republic)

    2010-04-15

    Purpose: To compare acute and late toxicity after three-dimensional conformal radiotherapy to the prostate to 74 Gy (3D-CRT) with intensity-modulated radiotherapy to 78 Gy (IMRT 78) and IMRT using simultaneous integrated boost to 82 Gy (IMRT/SIB 82). Patients and methods: 94 patients treated with 3D-CRT to the prostate and base of seminal vesicles to 74 Gy represented the first group. The second group consisted of 138 patients subjected to IMRT covering the prostate and base of seminal vesicles to 78 Gy. The last group was treated with IMRT using SIB. The prescribed doses were 82 Gy and 73.8 Gy in 42 fractions to the prostate and seminal vesicles. Late toxicity was prospectively scored according to the RTOG/FC-LENT scale. Results: Acute gastrointestinal toxicity {>=} grade 2 occurred in 35.1% of patients treated with 3D-CRT, in 16% subjected to IMRT 78, and in 7.7% receiving IMRT/SIB 82. Acute genitourinary toxicity {>=} grade 2 was observed in 26.6% (3D-CRT), 33% (IMRT 78), and 30.7% (IMRT/SIB 82). At 3 years, the estimated cumulative incidence of grade 3 late gastrointestinal toxicity was 14% for 3D-CRT, 5% for IMRT 78, and 2% for IMRT/SIB 82. The difference became significant (log rank p = 0.02). The estimated cumulative incidence of grade 3 late genitourinary toxicity was 9% (3D-CRT), 7% (IMRT 78), and 6% (IMRT/SIB 82) without statistical differences (log rank p = 0.32). Conclusion: SIB enables dose escalation up to 82 Gy with a lower rate of gastrointestinal toxicity grade 3 in comparison with 3D-CRT up to 74 Gy. (orig.)

  14. Evaluation and comparison of 3D-QSAR CoMSIA models for CDK1, CDK5, and GSK-3 inhibition by paullones

    DEFF Research Database (Denmark)

    Kunick, Conrad; Lauenroth, Kathrin; Wieking, Karen;

    2004-01-01

    With a view to the rational design of selective GSK-3beta inhibitors, 3D-QSAR CoMSIA models were developed for the inhibition of the three serine/threonine kinases CDK1/cyclin B, CDK5/p25, and GSK-3beta by compounds from the paullone inhibitor family. The models are based on the kinase inhibition...

  15. Stereological measures of trabecular bone structure: comparison of 3D micro computed tomography with 2D histological sections in human proximal tibial bone biopsies

    DEFF Research Database (Denmark)

    Thomsen, Jesper Skovhus; Laib, A.; Koller, B.;

    2005-01-01

    tibial metaphysis. The biopsies were embedded in methylmetacrylate before microCT scanning in a Scanco microCT 40 scanner at a resolution of 20 x 20 x 20 microm3, and the 3D data sets were analysed with a computer program. After microCT scanning, 16 sections were cut from the central 2 mm of each biopsy...

  16. Heart dose reduction in breast cancer treatment with simultaneous integrated boost. Comparison of treatment planning and dosimetry for a novel hybrid technique and 3D-CRT

    International Nuclear Information System (INIS)

    The present study compares in silico treatment plans of clinically established three-dimensional conformal radiotherapy (3D-CRT) with a hybrid technique consisting of intensity-modulated radiotherapy (IMRT) and volumetric modulated arc radiotherapy (VMAT) during normally fractionated radiation of mammary carcinomas with simultaneous integrated boost on the basis of dose-volume histogram (DVH) parameters. Radiation treatment planning was performed with a hybrid and a 3D-CRT treatment plan for 20 patients. Hybrid plans were implemented with two tangential IMRT fields and a VMAT field in the angular range of the tangents. Verification of the plan was performed with a manufacturer-independent measurement system consisting of a detector array and rotation unit. The mean values of the heart dose for the entire patient collective were 3.6 ± 2.5 Gy for 3D-CRT and 2.9 ± 2.1 Gy for the hybrid technique (p < 0.01). For the left side (n = 10), the mean values for the left anterior descending artery were 21.8 ± 7.4 Gy for 3D-CRT and 17.6 ± 7.4 Gy for the hybrid technique (p < 0.01). The mean values of the ipsilateral lung were 11.9 ± 1.6 Gy for 3D-CRT and 10.5 ± 1.3 Gy for the hybrid technique (p < 0.01). Calculated dose distributions in the hybrid arm were in good accordance with measured dose (on average 95.6 ± 0.5 % for γ < 1 and 3 %/3 mm). The difference of the mean treatment time per fraction was 7 s in favor of 3D-CRT. Compared with the established 3D-CRT technique, the hybrid technique allows for a decrease in dose, particularly of the mean heart and lung dose with comparable target volume acquisition and without disadvantageous low-dose load of contralateral structures. Uncomplicated implementation of the hybrid technique was demonstrated in this context. The hybrid technique combines the advantages of tangential IMRT with the superior sparing of organs at risk by VMAT. (orig.)

  17. Accuracy of x-ray image-based 3D localization from two C-arm views: a comparison between an ideal system and a real device

    Science.gov (United States)

    Brost, Alexander; Strobel, Norbert; Yatziv, Liron; Gilson, Wesley; Meyer, Bernhard; Hornegger, Joachim; Lewin, Jonathan; Wacker, Frank

    2009-02-01

    arm X-ray imaging devices are commonly used for minimally invasive cardiovascular or other interventional procedures. Calibrated state-of-the-art systems can, however, not only be used for 2D imaging but also for three-dimensional reconstruction either using tomographic techniques or even stereotactic approaches. To evaluate the accuracy of X-ray object localization from two views, a simulation study assuming an ideal imaging geometry was carried out first. This was backed up with a phantom experiment involving a real C-arm angiography system. Both studies were based on a phantom comprising five point objects. These point objects were projected onto a flat-panel detector under different C-arm view positions. The resulting 2D positions were perturbed by adding Gaussian noise to simulate 2D point localization errors. In the next step, 3D point positions were triangulated from two views. A 3D error was computed by taking differences between the reconstructed 3D positions using the perturbed 2D positions and the initial 3D positions of the five points. This experiment was repeated for various C-arm angulations involving angular differences ranging from 15° to 165°. The smallest 3D reconstruction error was achieved, as expected, by views that were 90° degrees apart. In this case, the simulation study yielded a 3D error of 0.82 mm +/- 0.24 mm (mean +/- standard deviation) for 2D noise with a standard deviation of 1.232 mm (4 detector pixels). The experimental result for this view configuration obtained on an AXIOM Artis C-arm (Siemens AG, Healthcare Sector, Forchheim, Germany) system was 0.98 mm +/- 0.29 mm, respectively. These results show that state-of-the-art C-arm systems can localize instruments with millimeter accuracy, and that they can accomplish this almost as well as an idealized theoretical counterpart. High stereotactic localization accuracy, good patient access, and CT-like 3D imaging capabilities render state-of-the-art C-arm systems ideal devices for X

  18. Intensity modulated radiotherapy as neoadjuvant chemoradiation for the treatment of patients with locally advanced pancreatic cancer. Outcome analysis and comparison with a 3D-treated patient cohort

    Energy Technology Data Exchange (ETDEWEB)

    Combs, S.E.; Habermehl, D.; Kessel, K.; Brecht, I. [Univ. Hospital of Heidelberg (Germany). Dept. of Radiation Oncology; Bergmann, F.; Schirmacher, P. [Univ. Hospital of Heidelberg (Germany). Dept. of Pathology; Werner, J.; Buechler, M.W. [Univ. Hospital of Heidelberg (Germany). Dept. of Surgery; Jaeger, D. [National Center for Tumor Diseases (NCT), Heidelberg (Germany); Debus, J. [Univ. Hospital of Heidelberg (Germany). Dept. of Radiation Oncology; Deutsches Krebsforschungszentrum (DKFZ), Heidelberg (Germany). Clinical Cooperation Unit Radiation Oncology

    2013-09-15

    Background: To evaluate outcome after intensity modulated radiotherapy (IMRT) compared to 3D conformal radiotherapy (3D-RT) as neoadjuvant treatment in patients with locally advanced pancreatic cancer (LAPC). Materials and methods: In total, 57 patients with LAPC were treated with IMRT and chemotherapy. A median total dose of 45 Gy to the PTV {sub baseplan} and 54 Gy to the PTV {sub boost} in single doses of 1.8 Gy for the PTV {sub baseplan} and median single doses of 2.2 Gy in the PTV {sub boost} were applied. Outcomes were evaluated and compared to a large cohort of patients treated with 3D-RT. Results: Overall treatment was well tolerated in all patients and IMRT could be completed without interruptions. Median overall survival was 11 months (range 5-37.5 months). Actuarial overall survival at 12 and 24 months was 36 % and 8 %, respectively. A significant impact on overall survival could only be observed for a decrease in CA 19-9 during treatment, patients with less pre-treatment CA 19-9 than the median, as well as weight loss during treatment. Local progression-free survival was 79 % after 6 months, 39 % after 12 months, and 13 % after 24 months. No factors significantly influencing local progression-free survival could be identified. There was no difference in overall and progression-free survival between 3D-RT and IMRT. Secondary resectability was similar in both groups (26 % vs. 28 %). Toxicity was comparable and consisted mainly of hematological toxicity due to chemotherapy. Conclusion: IMRT leads to a comparable outcome compared to 3D-RT in patients with LAPC. In the future, the improved dose distribution, as well as advances in image-guided radiotherapy (IGRT) techniques, may improve the use of IMRT in local dose escalation strategies to potentially improve outcome. (orig.)

  19. In vivo surface dose measurement using GafChromic film dosimetry in breast cancer radiotherapy: comparison of 7-field IMRT, tangential IMRT and tangential 3D-CRT

    International Nuclear Information System (INIS)

    The purpose of this study was to compare the surface dose of 7-field IMRT (7 F-IMRT), tangential beam IMRT (TB-IMRT), and tangential beam 3D-CRT (3D-CRT) of breast cancer patients receiving adjuvant radiotherapy by means of in vivo GafChromic film dosimetry. Breast cancer patients receiving adjuvant radiotherapy of the whole breast or the chest wall were eligible for the study. Study patients were treated with a treatment plan using two different radiotherapy techniques (first patient series, 3D-CRT followed by TB-IMRT; second patient series, TB-IMRT followed by 7 F-IMRT). The surface dose was evaluated on three consecutive treatment fractions per radiotherapy technique using in vivo GafChromic film dosimetry. The paired t-test was used to assess the difference of in vivo GafChromic film readings or calculated plan parameters of the compared pairs of radiation techniques for statistical significance. Forty-five unselected breast cancer patients were analysed in this study. 7 F-IMRT significantly reduced the surface dose compared to TB-IMRT. Differences were greatest in the central and lateral breast or chest wall region and amounted to a dose reduction of -11.8% to -18.8%. No significant difference of the surface dose was observed between TB-IMRT and 3D-CRT. A corresponding observation was obtained for the calculated skin dose derived from dose-volume histograms. In adjuvant breast cancer radiotherapy, 7 F-IMRT offers a significantly reduced surface dose compared to TB-IMRT or 3D-CRT

  20. Heart dose reduction in breast cancer treatment with simultaneous integrated boost. Comparison of treatment planning and dosimetry for a novel hybrid technique and 3D-CRT

    Energy Technology Data Exchange (ETDEWEB)

    Joest, Vincent; Kretschmer, Matthias; Sabatino, Marcello; Wuerschmidt, Florian; Dahle, Joerg; Lorenzen, Joern [Radiological Alliance, Hamburg (Germany); Ueberle, Friedrich [University of Applied Sciences, Faculty Life Sciences, Hamburg (Germany)

    2015-09-15

    The present study compares in silico treatment plans of clinically established three-dimensional conformal radiotherapy (3D-CRT) with a hybrid technique consisting of intensity-modulated radiotherapy (IMRT) and volumetric modulated arc radiotherapy (VMAT) during normally fractionated radiation of mammary carcinomas with simultaneous integrated boost on the basis of dose-volume histogram (DVH) parameters. Radiation treatment planning was performed with a hybrid and a 3D-CRT treatment plan for 20 patients. Hybrid plans were implemented with two tangential IMRT fields and a VMAT field in the angular range of the tangents. Verification of the plan was performed with a manufacturer-independent measurement system consisting of a detector array and rotation unit. The mean values of the heart dose for the entire patient collective were 3.6 ± 2.5 Gy for 3D-CRT and 2.9 ± 2.1 Gy for the hybrid technique (p < 0.01). For the left side (n = 10), the mean values for the left anterior descending artery were 21.8 ± 7.4 Gy for 3D-CRT and 17.6 ± 7.4 Gy for the hybrid technique (p < 0.01). The mean values of the ipsilateral lung were 11.9 ± 1.6 Gy for 3D-CRT and 10.5 ± 1.3 Gy for the hybrid technique (p < 0.01). Calculated dose distributions in the hybrid arm were in good accordance with measured dose (on average 95.6 ± 0.5 % for γ < 1 and 3 %/3 mm). The difference of the mean treatment time per fraction was 7 s in favor of 3D-CRT. Compared with the established 3D-CRT technique, the hybrid technique allows for a decrease in dose, particularly of the mean heart and lung dose with comparable target volume acquisition and without disadvantageous low-dose load of contralateral structures. Uncomplicated implementation of the hybrid technique was demonstrated in this context. The hybrid technique combines the advantages of tangential IMRT with the superior sparing of organs at risk by VMAT. (orig.) [German] Die vorliegende Studie vergleicht ''in silico

  1. LOTT RANCH 3D PROJECT

    International Nuclear Information System (INIS)

    The Lott Ranch 3D seismic prospect located in Garza County, Texas is a project initiated in September of 1991 by the J.M. Huber Corp., a petroleum exploration and production company. By today's standards the 126 square mile project does not seem monumental, however at the time it was conceived it was the most intensive land 3D project ever attempted. Acquisition began in September of 1991 utilizing GEO-SEISMIC, INC., a seismic data contractor. The field parameters were selected by J.M. Huber, and were of a radical design. The recording instruments used were GeoCor IV amplifiers designed by Geosystems Inc., which record the data in signed bit format. It would not have been practical, if not impossible, to have processed the entire raw volume with the tools available at that time. The end result was a dataset that was thought to have little utility due to difficulties in processing the field data. In 1997, Yates Energy Corp. located in Roswell, New Mexico, formed a partnership to further develop the project. Through discussions and meetings with Pinnacle Seismic, it was determined that the original Lott Ranch 3D volume could be vastly improved upon reprocessing. Pinnacle Seismic had shown the viability of improving field-summed signed bit data on smaller 2D and 3D projects. Yates contracted Pinnacle Seismic Ltd. to perform the reprocessing. This project was initiated with high resolution being a priority. Much of the potential resolution was lost through the initial summing of the field data. Modern computers that are now being utilized have tremendous speed and storage capacities that were cost prohibitive when this data was initially processed. Software updates and capabilities offer a variety of quality control and statics resolution, which are pertinent to the Lott Ranch project. The reprocessing effort was very successful. The resulting processed data-set was then interpreted using modern PC-based interpretation and mapping software. Production data, log data

  2. Single breath-hold assessment of cardiac function using an accelerated 3D single breath-hold acquisition technique - comparison of an intravascular and extravascular contrast agent

    Directory of Open Access Journals (Sweden)

    Makowski Marcus R

    2012-07-01

    Full Text Available Abstract Background Cardiovascular magnetic resonance (CMR is the current gold standard for the assessment of left ventricular (LV function. Repeated breath-holds are needed for standard multi-slice 2D cine steady-state free precession sequences (M2D-SSFP. Accelerated single breath-hold techniques suffer from low contrast between blood pool and myocardium. In this study an intravascular contrast agent was prospectively compared to an extravascular contrast agent for the assessment of LV function using a single-breath-hold 3D-whole-heart cine SSFP sequence (3D-SSFP. Methods LV function was assessed in fourteen patients on a 1.5 T MR-scanner (Philips Healthcare using 32-channel coil technology. Patients were investigated twice using a 3D-SSFP sequence (acquisition time 18–25 s after Gadopentetate dimeglumine (GdD, day 1 and Gadofosveset trisodium (GdT, day 2 administration. Image acquisition was accelerated using sensitivity encoding in both phase encoding directions (4xSENSE. CNR and BMC were both measured between blood and myocardium. The CNR incorporated noise measurements, while the BMC represented the coeffiancy between the signal from blood and myocardium [1]. Contrast to noise ratio (CNR, blood to myocardium contrast (BMC, image quality, LV functional parameters and intra-/interobserver variability were compared. A M2D-SSFP sequence was used as a reference standard on both days. Results All 3D-SSFP sequences were successfully acquired within one breath-hold after GdD and GdT administration. CNR and BMC were significantly (p vs. 23.7 and regression analysis showed a stronger correlation to the reference standard (R2 = 0.92 vs. R2 = 0.71, compared to 3D-SSFP with GdD. Conclusions A single-breath-hold 3D-whole-heart cine SSFP sequence in combination with 32-channel technology and an intravascular contrast agent allows for the accurate and fast assessment of LV function. Trial registration The study was approved by the local

  3. Non-local gravity and comparison with observational datasets. II. Updated results and Bayesian model comparison with ΛCDM

    Science.gov (United States)

    Dirian, Yves; Foffa, Stefano; Kunz, Martin; Maggiore, Michele; Pettorino, Valeria

    2016-05-01

    We present a comprehensive and updated comparison with cosmological observations of two non-local modifications of gravity previously introduced by our group, the so called RR and RT models. We implement the background evolution and the cosmological perturbations of the models in a modified Boltzmann code, using CLASS. We then test the non-local models against the Planck 2015 TT, TE, EE and Cosmic Microwave Background (CMB) lensing data, isotropic and anisotropic Baryonic Acoustic Oscillations (BAO) data, JLA supernovae, H0 measurements and growth rate data, and we perform Bayesian parameter estimation. We then compare the RR, RT and ΛCDM models, using the Savage-Dickey method. We find that the RT model and ΛCDM perform equally well, while the performance of the RR model with respect to ΛCDM depends on whether or not we include a prior on H0 based on local measurements.

  4. Non-local gravity and comparison with observational datasets. II. Updated results and Bayesian model comparison with $\\Lambda$CDM

    CERN Document Server

    Dirian, Yves; Kunz, Martin; Maggiore, Michele; Pettorino, Valeria

    2016-01-01

    We present a comprehensive and updated comparison with cosmological observations of two non-local modifications of gravity previously introduced by our group, the so called RR and RT models. We implement the background evolution and the cosmological perturbations of the models in a modified Boltzmann code, using CLASS. We then test the non-local models against the Planck 2015 TT, TE, EE and Cosmic Microwave Background (CMB) lensing data, isotropic and anisotropic Baryonic Acoustic Oscillations (BAO) data, JLA supernovae, $H_0$ measurements and growth rate data, and we perform Bayesian parameter estimation. We then compare the RR, RT and $\\Lambda$CDM models, using the Savage-Dickey method. We find that the RT model and $\\Lambda$CDM perform equally well, while the RR model is disfavored.

  5. Comparison of TTP and Tmax estimation techniques in perfusion-weighted MR datasets for tissue-at-risk definition

    Science.gov (United States)

    Forkert, Nils Daniel; Kaesemann, Philipp; Fiehler, Jens; Thomalla, Götz

    2012-03-01

    Acute stroke is a major cause for death and disability among adults in the western hemisphere. Time-resolved perfusion-weighted (PWI) and diffusion-weighted (DWI) MR datasets are typically used for the estimation of tissue-at-risk, which is an important variable for acute stroke therapy decision-making. Although several parameters, which can be estimated based on PWI concentration curves, have been proposed for tissue-at-risk definition in the past, the time-to-peak (TTP) or time-to-max (Tmax) parameter is used most frequently in recent trials. Unfortunately, there is no clear consensus which method should be used for estimation of Tmax or TTP maps. Consequently, tissue-at-risk estimations and following treatment decision might vary considerably with the method used. In this work, 5 PWI datasets of acute stroke patients were used to calculate TTP or Tmax maps using 10 different estimation techniques. The resulting maps were segmented using a typical threshold of +4s and the corresponding PWI-lesions were calculated. The first results suggest that the TTP or Tmax method used has a major impact on the resulting tissue-at-risk volume. Numerically, the calculated volumes differed up to a factor of 3. In general, the deconvolution-based Tmax techniques estimate the ischemic penumbra rather smaller compared to direct TTP based techniques. In conclusion, the comparison of different methods for TTP or Tmax estimation revealed high variations regarding the resulting tissue-at-risk volume, which might lead to different therapy decisions. Therefore, a consensus how TTP or Tmax maps should be calculated seems necessary.

  6. Classification of forest development stages from national low-density lidar datasets: a comparison of machine learning methods

    Directory of Open Access Journals (Sweden)

    R. Valbuena

    2016-02-01

    Full Text Available The area-based method has become a widespread approach in airborne laser scanning (ALS, being mainly employed for the estimation of continuous variables describing forest attributes: biomass, volume, density, etc. However, to date, classification methods based on machine learning, which are fairly common in other remote sensing fields, such as land use / land cover classification using multispectral sensors, have been largely overseen in forestry applications of ALS. In this article, we wish to draw the attention on statistical methods predicting discrete responses, for supervised classification of ALS datasets. A wide spectrum of approaches are reviewed: discriminant analysis (DA using various classifiers –maximum likelihood, minimum volume ellipsoid, naïve Bayes–, support vector machine (SVM, artificial neural networks (ANN, random forest (RF and nearest neighbour (NN methods. They are compared in the context of a classification of forest areas into development classes (DC used in practical silvicultural management in Finland, using their low-density national ALS dataset. We observed that RF and NN had the most balanced error matrices, with cross-validated predictions which were mainly unbiased for all DCs. Although overall accuracies were higher for SVM and ANN, their results were very dissimilar across DCs, and they can therefore be only advantageous if certain DCs are targeted. DA methods underperformed in comparison to other alternatives, and were only advantageous for the detection of seedling stands. These results show that, besides the well demonstrated capacity of ALS for quantifying forest stocks, there is a great deal of potential for predicting categorical variables in general, and forest types in particular. In conclusion, we consider that the presented methodology shall also be adapted to the type of forest classes that can be relevant to Mediterranean ecosystems, opening a range of possibilities for future research, in which

  7. RELAP5-3D Developmental Assessment: Comparison of Versions 4.2.1i and 4.1.3i

    Energy Technology Data Exchange (ETDEWEB)

    Paul D. Bayless

    2014-06-01

    Figures have been generated comparing the parameters used in the developmental assessment of the RELAP5-3D code using versions 4.2.1i and 4.1.3i. The figures, which are the same as those used in Volume III of the RELAP5-3D code manual, compare calculations using the semi-implicit solution scheme with available experiment data. These figures provide a quick, visual indication of how the code predictions changed between these two code versions and can be used to identify cases in which the assessment judgment may need to be changed in Volume III of the code manual. Changes to the assessment judgments made after reviewing all of the assessment cases are also provided.

  8. RELAP5-3D Developmental Assessment: Comparison of Versions 4.3.4i and 4.2.1i

    Energy Technology Data Exchange (ETDEWEB)

    Bayless, Paul David [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-10-01

    Figures have been generated comparing the parameters used in the developmental assessment of the RELAP5-3D code using versions 4.3.4i and 4.2.1i. The figures, which are the same as those used in Volume III of the RELAP5-3D code manual, compare calculations using the semi-implicit solution scheme with available experiment data. These figures provide a quick, visual indication of how the code predictions changed between these two code versions and can be used to identify cases in which the assessment judgment may need to be changed in Volume III of the code manual. Changes to the assessment judgments made after reviewing all of the assessment cases are also provided.

  9. AP-PA field orientation followed by IMRT reduces lung exposure in comparison to conventional 3D conformal and sole IMRT in centrally located lung tumors

    OpenAIRE

    Soyfer Viacheslav; Meir Yaron; Corn Benjamin W; Schifter Dan; Gez Eliahu; Tempelhoff Haim; Shtraus Natan

    2012-01-01

    Abstract Little attention has been paid to the fact that intensity modulated radiation therapy (IMRT) techniques do not easily enable treatment with opposed beams. Three treatment plans (3 D conformal, IMRT, and combined (anterior-posterior-posterio-anterior (AP-PA) + IMRT) of 7 patients with centrally-located lung cancer were compared for exposure of lung, spinal cord and esophagus. Combined IMRT and AP-PA techniques offer better lung tissue sparing compared to plans predicated solely on IMR...

  10. Chest wall desmoid tumours treated with definitive radiotherapy: a plan comparison of 3D conformal radiotherapy, intensity-modulated radiotherapy and volumetric-modulated arc radiotherapy

    OpenAIRE

    Liu, Jia; Ng, Diana; Lee, James; Stalley, Paul; Hong, Angela

    2016-01-01

    Purpose Definitive radiotherapy is often used for chest wall desmoid tumours due to size or anatomical location. The delivery of radiotherapy is challenging due to the large size and constraints of normal surrounding structures. We compared the dosimetry of 3D conformal radiotherapy (3DCRT), intensity-modulated radiotherapy (IMRT) and volumetric-modulated arc radiotherapy (VMAT) to evaluate the best treatment option. Methods and materials Ten consecutive patients with inoperable chest wall de...

  11. UAV-BASED ACQUISITION OF 3D POINT CLOUD – A COMPARISON OF A LOW-COST LASER SCANNER AND SFM-TOOLS

    OpenAIRE

    Mader, D.; R. Blaskow; Westfeld, P.; Maas, H.-G.

    2015-01-01

    The Project ADFEX (Adaptive Federative 3D Exploration of Multi Robot System) pursues the goal to develop a time- and cost-efficient system for exploration and monitoring task of unknown areas or buildings. A fleet of unmanned aerial vehicles equipped with appropriate sensors (laser scanner, RGB camera, near infrared camera, thermal camera) were designed and built. A typical operational scenario may include the exploration of the object or area of investigation by an UAV equipped with...

  12. Numerical Simulation of 3D Solid-Liquid Turbulent Flow in a Low Specific Speed Centrifugal Pump: Performance Comparison of Four Geometric Models

    OpenAIRE

    Baocheng Shi; Jinjia Wei

    2014-01-01

    For numerically simulating 3D solid-liquid turbulent flow in low specific speed centrifugal pumps, there exist several problems including how to design geometrical shape of the calculation model to represent the real pump and how to predict pump performance accurately to guide the design of pump. To solve these problems, four kinds of geometric models were designed. The performance of a low specific speed solid-liquid centrifugal pump was predicted, and the results showed that the improved pr...

  13. Comparison of contrast-enhanced T1-weighted and 3D constructive interference in steady state images for predicting outcome after hearing-preservation surgery for vestibular schwannoma

    Energy Technology Data Exchange (ETDEWEB)

    Kocaoglu, M.; Bulakbasi, N.; Ucoz, T.; Ustunsoz, B.; Tayfun, C.; Somuncu, I. [GATA Department of Radiology, 06018, Etlik, Ankara (Turkey); Pabuscu, Y. [Department of Radiology, Celal Bayar University, Manisa (Turkey)

    2003-07-01

    We compared contrast-enhanced T1-weighted and 3D constructive interference in steady state (CISS) sequences for demonstrating possible prognostic factors in hearing-preservation surgery for vestibular schwannoma. We studied 22 patients with vestibular schwannomas having hearing-preservation surgery. Postoperatively six (27%) had a facial palsy and eight (36%) had hearing loss. There was a significant correlation between the size of the tumour and facial palsy (r=-0.72). Both techniques adequately demonstrated all tumours. Involvement of the fundus of the internal auditory canal (IAC) and a small distance between the lateral border of the tumour and the fundus were correlated significantly with hearing loss (r=-0.81 and -0.75, respectively). The 3D-CISS sequence, by virtue of its high contrast resolution was superior to T1-weighted images (P<0.05) for detection of the fundal involvement. The direction of displacement of the facial nerve did not correlate with facial palsy or hearing loss. We think that 3D-CISS images better show the features influencing surgical outcome, but that contrast-enhanced T1-weighted images are required for diagnosis. (orig.)

  14. Massive 3D Supergravity

    CERN Document Server

    Andringa, Roel; de Roo, Mees; Hohm, Olaf; Sezgin, Ergin; Townsend, Paul K

    2009-01-01

    We construct the N=1 three-dimensional supergravity theory with cosmological, Einstein-Hilbert, Lorentz Chern-Simons, and general curvature squared terms. We determine the general supersymmetric configuration, and find a family of supersymmetric adS vacua with the supersymmetric Minkowski vacuum as a limiting case. Linearizing about the Minkowski vacuum, we find three classes of unitary theories; one is the supersymmetric extension of the recently discovered `massive 3D gravity'. Another is a `new topologically massive supergravity' (with no Einstein-Hilbert term) that propagates a single (2,3/2) helicity supermultiplet.

  15. Massive 3D supergravity

    Energy Technology Data Exchange (ETDEWEB)

    Andringa, Roel; Bergshoeff, Eric A; De Roo, Mees; Hohm, Olaf [Centre for Theoretical Physics, University of Groningen, Nijenborgh 4, 9747 AG Groningen (Netherlands); Sezgin, Ergin [George and Cynthia Woods Mitchell Institute for Fundamental Physics and Astronomy, Texas A and M University, College Station, TX 77843 (United States); Townsend, Paul K, E-mail: E.A.Bergshoeff@rug.n, E-mail: O.Hohm@rug.n, E-mail: sezgin@tamu.ed, E-mail: P.K.Townsend@damtp.cam.ac.u [Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA (United Kingdom)

    2010-01-21

    We construct the N=1 three-dimensional supergravity theory with cosmological, Einstein-Hilbert, Lorentz Chern-Simons, and general curvature squared terms. We determine the general supersymmetric configuration, and find a family of supersymmetric adS vacua with the supersymmetric Minkowski vacuum as a limiting case. Linearizing about the Minkowski vacuum, we find three classes of unitary theories; one is the supersymmetric extension of the recently discovered 'massive 3D gravity'. Another is a 'new topologically massive supergravity' (with no Einstein-Hilbert term) that propagates a single (2,3/2) helicity supermultiplet.

  16. 3D Digital Modelling

    DEFF Research Database (Denmark)

    Hundebøl, Jesper

    ABSTRACT: Lack of productivity in construction is a well known issue. Despite the fact that causes hereof are multiple, the introduction of information technology is a frequently observed response to almost any challenge. ICT in construction is a thoroughly researched matter, however, the current...... important to appreciate the analysis. Before turning to the presentation of preliminary findings and a discussion of 3D digital modelling, it begins, however, with an outline of industry specific ICT strategic issues. Paper type. Multi-site field study...

  17. 3D face modeling, analysis and recognition

    CERN Document Server

    Daoudi, Mohamed; Veltkamp, Remco

    2013-01-01

    3D Face Modeling, Analysis and Recognition presents methodologies for analyzing shapes of facial surfaces, develops computational tools for analyzing 3D face data, and illustrates them using state-of-the-art applications. The methodologies chosen are based on efficient representations, metrics, comparisons, and classifications of features that are especially relevant in the context of 3D measurements of human faces. These frameworks have a long-term utility in face analysis, taking into account the anticipated improvements in data collection, data storage, processing speeds, and application s

  18. TOWARDS: 3D INTERNET

    Directory of Open Access Journals (Sweden)

    Ms. Swapnali R. Ghadge

    2013-08-01

    Full Text Available In today’s ever-shifting media landscape, it can be a complex task to find effective ways to reach your desired audience. As traditional media such as television continue to lose audience share, one venue in particular stands out for its ability to attract highly motivated audiences and for its tremendous growth potential the 3D Internet. The concept of '3D Internet' has recently come into the spotlight in the R&D arena, catching the attention of many people, and leading to a lot of discussions. Basically, one can look into this matter from a few different perspectives: visualization and representation of information, and creation and transportation of information, among others. All of them still constitute research challenges, as no products or services are yet available or foreseen for the near future. Nevertheless, one can try to envisage the directions that can be taken towards achieving this goal. People who take part in virtual worlds stay online longer with a heightened level of interest. To take advantage of that interest, diverse businesses and organizations have claimed an early stake in this fast-growing market. They include technology leaders such as IBM, Microsoft, and Cisco, companies such as BMW, Toyota, Circuit City, Coca Cola, and Calvin Klein, and scores of universities, including Harvard, Stanford and Penn State.

  19. Towards Precise Metadata-set for Discovering 3D Geospatial Models in Geo-portals

    Science.gov (United States)

    Zamyadi, A.; Pouliot, J.; Bédard, Y.

    2013-09-01

    Data Infrastructure (CGDI) metadata which is an implementation of North American Profile of ISO-19115. The comparison analyzes the two metadata against three simulated scenarios about discovering needed 3D geo-spatial datasets. Considering specific metadata about 3D geospatial models, the proposed metadata-set has six additional classes on geometric dimension, level of detail, geometric modeling, topology, and appearance information. In addition classes on data acquisition, preparation, and modeling, and physical availability have been specialized for 3D geospatial models.

  20. A quantitative comparison of human HT-1080 fibrosarcoma cells and primary human dermal fibroblasts identifies a 3D migration mechanism with properties unique to the transformed phenotype.

    Directory of Open Access Journals (Sweden)

    Michael P Schwartz

    Full Text Available Here, we describe an engineering approach to quantitatively compare migration, morphologies, and adhesion for tumorigenic human fibrosarcoma cells (HT-1080s and primary human dermal fibroblasts (hDFs with the aim of identifying distinguishing properties of the transformed phenotype. Relative adhesiveness was quantified using self-assembled monolayer (SAM arrays and proteolytic 3-dimensional (3D migration was investigated using matrix metalloproteinase (MMP-degradable poly(ethylene glycol (PEG hydrogels ("synthetic extracellular matrix" or "synthetic ECM". In synthetic ECM, hDFs were characterized by vinculin-containing features on the tips of protrusions, multipolar morphologies, and organized actomyosin filaments. In contrast, HT-1080s were characterized by diffuse vinculin expression, pronounced β1-integrin on the tips of protrusions, a cortically-organized F-actin cytoskeleton, and quantitatively more rounded morphologies, decreased adhesiveness, and increased directional motility compared to hDFs. Further, HT-1080s were characterized by contractility-dependent motility, pronounced blebbing, and cortical contraction waves or constriction rings, while quantified 3D motility was similar in matrices with a wide range of biochemical and biophysical properties (including collagen despite substantial morphological changes. While HT-1080s were distinct from hDFs for each of the 2D and 3D properties investigated, several features were similar to WM239a melanoma cells, including rounded, proteolytic migration modes, cortical F-actin organization, and prominent uropod-like structures enriched with β1-integrin, F-actin, and melanoma cell adhesion molecule (MCAM/CD146/MUC18. Importantly, many of the features observed for HT-1080s were analogous to cellular changes induced by transformation, including cell rounding, a disorganized F-actin cytoskeleton, altered organization of focal adhesion proteins, and a weakly adherent phenotype. Based on our results

  1. Analysis of the behavior and 2D modeling of ferrite inductors with E geometry: comparison with 3D model and real measurements

    Directory of Open Access Journals (Sweden)

    Pleite J.

    2013-01-01

    Full Text Available In this paper we propose and validate by experiment a practical method to compute by simulations the inductance of a ferrite inductor as a function of the current intensity level from the linear to the saturation regions. Our method combines the use of 2D Finite Element Analysis with experimental measurements taken in a laboratory environment. We also present and analyze results of the convergence and computational cost of the 2D and 3D simulations showing the reduction of computational cost when we chose the 2D simulation.

  2. Comparison of Changes in Immunological Parameters in Human Lymphocytes in 2D Versus 3D Clinostats-Goal Towards Microgravity Analog Calibration for Future Space Experiments

    Science.gov (United States)

    Sundaresan, Alamelu; Russomano, Thais; Pellis, Neal R.

    2008-06-01

    Exposure to microgravity may produce changes in the performance of the immunological system at the cellular level as well as in the major physiological systems of the body. Studies in true spaceflight and similar studies in 2D clinostats (Rotating wall vessels) related to decreased immune function in astronaut blood and normal human lymphocytes indicate a decrease in cell proliferation, T cell activation, locomotion and altered lymphocyte signal transduction (Sundaresan and Pellis, 2008, Sundaresan et al., 2004). The present study was designed to investigate whether the proliferation and viability of lymphocytes are reduced by exposure to rotation in a 3D-Clinostat, which is used to simulate microgravity for cells.

  3. AP-PA field orientation followed by IMRT reduces lung exposure in comparison to conventional 3D conformal and sole IMRT in centrally located lung tumors.

    Science.gov (United States)

    Soyfer, Viacheslav; Meir, Yaron; Corn, Benjamin W; Schifter, Dan; Gez, Eliahu; Tempelhoff, Haim; Shtraus, Natan

    2012-01-01

    Little attention has been paid to the fact that intensity modulated radiation therapy (IMRT) techniques do not easily enable treatment with opposed beams. Three treatment plans (3 D conformal, IMRT, and combined (anterior-posterior-posterio-anterior (AP-PA) + IMRT) of 7 patients with centrally-located lung cancer were compared for exposure of lung, spinal cord and esophagus. Combined IMRT and AP-PA techniques offer better lung tissue sparing compared to plans predicated solely on IMRT for centrally-located lung tumors. PMID:22340727

  4. AP-PA field orientation followed by IMRT reduces lung exposure in comparison to conventional 3D conformal and sole IMRT in centrally located lung tumors

    Directory of Open Access Journals (Sweden)

    Soyfer Viacheslav

    2012-02-01

    Full Text Available Abstract Little attention has been paid to the fact that intensity modulated radiation therapy (IMRT techniques do not easily enable treatment with opposed beams. Three treatment plans (3 D conformal, IMRT, and combined (anterior-posterior-posterio-anterior (AP-PA + IMRT of 7 patients with centrally-located lung cancer were compared for exposure of lung, spinal cord and esophagus. Combined IMRT and AP-PA techniques offer better lung tissue sparing compared to plans predicated solely on IMRT for centrally-located lung tumors.

  5. AP-PA field orientation followed by IMRT reduces lung exposure in comparison to conventional 3D conformal and sole IMRT in centrally located lung tumors

    International Nuclear Information System (INIS)

    Little attention has been paid to the fact that intensity modulated radiation therapy (IMRT) techniques do not easily enable treatment with opposed beams. Three treatment plans (3 D conformal, IMRT, and combined (anterior-posterior-posterio-anterior (AP-PA) + IMRT) of 7 patients with centrally-located lung cancer were compared for exposure of lung, spinal cord and esophagus. Combined IMRT and AP-PA techniques offer better lung tissue sparing compared to plans predicated solely on IMRT for centrally-located lung tumors

  6. A Comparison of a Multi-body Model and 3D Kinematics and EMG ofDouble-leg Circle on Pommel Horse

    OpenAIRE

    Qian, Jing-guang; Su, Yang; Song, Ya-wei; Qiang, Ye; Zhang, Songning

    2012-01-01

    The purpose of this study was to establish a multi-segment dynamic model in the LifeMOD to examine kinematics of the center of mass and foot, and muscle forces of selected upper extremity muslces during a double-leg circle (DLC) movement on pommel horse in gymnastics and compared with three-dimensional kinematics of the movement and surface electromyographic (sEMG) activity of the muscles. The DLC movement of one elite male gymnast was collected. The three-dimensional (3D) data was imported i...

  7. Tablet-Based Interaction for Immersive 3D Data Exploration

    OpenAIRE

    Lopez, David; Oehlberg, Lora; Doger, Candemir; Isenberg, Tobias

    2014-01-01

    Our overall vision is to enable researchers to explore 3D datasets with as much immersion as possible, arising both from visuals as well as from interaction . We therefore explore ways to combine an immersive large view of the 3D data with means to intuitively control this view with touch input on a separate mobile monoscopic tablet. This combination has the potential to increase people's acceptance of stereoscopic environments for 3D data visualization since--through touch-based interaction-...

  8. Shaping 3-D boxes

    DEFF Research Database (Denmark)

    Stenholt, Rasmus; Madsen, Claus B.

    2011-01-01

    Enabling users to shape 3-D boxes in immersive virtual environments is a non-trivial problem. In this paper, a new family of techniques for creating rectangular boxes of arbitrary position, orientation, and size is presented and evaluated. These new techniques are based solely on position data......, making them different from typical, existing box shaping techniques. The basis of the proposed techniques is a new algorithm for constructing a full box from just three of its corners. The evaluation of the new techniques compares their precision and completion times in a 9 degree-of-freedom (Do......F) docking experiment against an existing technique, which requires the user to perform the rotation and scaling of the box explicitly. The precision of the users' box construction is evaluated by a novel error metric measuring the difference between two boxes. The results of the experiment strongly indicate...

  9. Tangential beam IMRT versus tangential beam 3D-CRT of the chest wall in postmastectomy breast cancer patients: A dosimetric comparison

    Directory of Open Access Journals (Sweden)

    AI-Yahya Khaled

    2011-03-01

    Full Text Available Abstract Background This study evaluates the dose distribution of reversed planned tangential beam intensity modulated radiotherapy (IMRT compared to standard wedged tangential beam three-dimensionally planned conformal radiotherapy (3D-CRT of the chest wall in unselected postmastectomy breast cancer patients Methods For 20 unselected subsequent postmastectomy breast cancer patients tangential beam IMRT and tangential beam 3D-CRT plans were generated for the radiotherapy of the chest wall. The prescribed dose was 50 Gy in 25 fractions. Dose-volume histograms were evaluated for the PTV and organs at risk. Parameters of the dose distribution were compared using the Wilcoxon matched pairs test. Results Tangential beam IMRT statistically significantly reduced the ipsilateral mean lung dose by an average of 21% (1129 cGy versus 1437 cGy. In all patients treated on the left side, the heart volume encompassed by the 70% isodose line (V70%; 35 Gy was reduced by an average of 43% (5.7% versus 10.6%, and the mean heart dose by an average of 20% (704 cGy versus 877 cGy. The PTV showed a significantly better conformity index with IMRT; the homogeneity index was not significantly different. Conclusions Tangential beam IMRT significantly reduced the dose-volume of the ipsilateral lung and heart in unselected postmastectomy breast cancer patients.

  10. Comparison of UAV-Enabled Photogrammetry-Based 3D Point Clouds and Interpolated DSMs of Sloping Terrain for Rockfall Hazard Analysis

    Science.gov (United States)

    Manousakis, J.; Zekkos, D.; Saroglou, F.; Clark, M.

    2016-10-01

    UAVs are expected to be particularly valuable to define topography for natural slopes that may be prone to geological hazards, such as landslides or rockfalls. UAV-enabled imagery and aerial mapping can lead to fast and accurate qualitative and quantitative results for photo documentation as well as basemap 3D analysis that can be used for geotechnical stability analyses. In this contribution, the case study of a rockfall near Ponti village that was triggered during the November 17th 2015 Mw 6.5 earthquake in Lefkada, Greece is presented with a focus on feature recognition and 3D terrain model development for use in rockfall hazard analysis. A significant advantage of the UAV was the ability to identify from aerial views the rockfall trajectory along the terrain, the accuracy of which is crucial to subsequent geotechnical back-analysis. Fast static GPS control points were measured for optimizing internal and external camera parameters and model georeferencing. Emphasis is given on an assessment of the error associated with the basemap when fewer and poorly distributed ground control points are available. Results indicate that spatial distribution and image occurrences of control points throughout the mapped area and image block is essential in order to produce accurate geospatial data with minimum distortions.

  11. A Comparison of a Multi-body Model and 3D Kinematics and EMG ofDouble-leg Circle on Pommel Horse.

    Science.gov (United States)

    Qian, Jing-Guang; Su, Yang; Song, Ya-Wei; Qiang, Ye; Zhang, Songning

    2012-03-01

    The purpose of this study was to establish a multi-segment dynamic model in the LifeMOD to examine kinematics of the center of mass and foot, and muscle forces of selected upper extremity muslces during a double-leg circle (DLC) movement on pommel horse in gymnastics and compared with three-dimensional kinematics of the movement and surface electromyographic (sEMG) activity of the muscles. The DLC movement of one elite male gymnast was collected. The three-dimensional (3D) data was imported in the Lifemod to create a full-body human model. A 16-Channel surface electromyography system was used to collect sEMG signals of middle deltoid, biceps brachii, triceps brachii, latissimusdorsi, and pectoralis major. The 3D center of mass and foot displacement showed a good match with the computer simulated results. The muscle force estimations from the model during the four DLC phases were also generally supported by the integrated sEMG results, suggesting that the model was valid. A potential application of this model is to help identify shortcomings of athletes and help establish appropriate training plans errors in the DLC technique during training. PMID:23487347

  12. KPG Index versus OPG Measurements: A Comparison between 3D and 2D Methods in Predicting Treatment Duration and Difficulty Level for Patients with Impacted Maxillary Canines

    Directory of Open Access Journals (Sweden)

    Domenico Dalessandri

    2014-01-01

    Full Text Available Aim. The aim of this study was to test the agreement between orthopantomography (OPG based 2D measurements and the KPG index, a new index based on 3D Cone Beam Computed Tomography (CBCT images, in predicting orthodontic treatment duration and difficulty level of impacted maxillary canines. Materials and Methods. OPG and CBCT images of 105 impacted canines were independently scored by three orthodontists at t0 and after 1 month (t1, using the KPG index and the following 2D methods: distance from cusp tip and occlusal plane, cusp tip position in relation to the lateral incisor, and canine inclination. Pearson’s coefficients were used to evaluate the degree of agreement and the χ2 with Yates correction test was used to assess the independence between them. Results. Inter- and intrarater reliability were higher with KPG compared to 2D methods. Pearson’s coefficients showed a statistically significant association between all the indexes, while the χ2 with Yates correction test resulted in a statistically significant rejection of independency only for one 2D index. Conclusions. 2D indexes for predicting impacted maxillary canines treatment duration and difficulty sometimes are discordant; a 3D index like the KPG index could be useful in solving these conflicts.

  13. Comparison between 3D volumetric rendering and multiplanar slices on the reliability of linear measurements on CBCT images: an in vitro study

    Directory of Open Access Journals (Sweden)

    Thais Maria Freire FERNANDES

    2015-02-01

    Full Text Available OBJECTIVE: The purpose of this study was to determine the accuracy and reliability of two methods of measurements of linear distances (multiplanar 2D and tridimensional reconstruction 3D obtained from cone-beam computed tomography (CBCT with different voxel sizes. MATERIAL AND METHODS: Ten dry human mandibles were scanned at voxel sizes of 0.2 and 0.4 mm. Craniometric anatomical landmarks were identified twice by two independent operators on the multiplanar reconstructed and on volume rendering images that were generated by the software Dolphin®. Subsequently, physical measurements were performed using a digital caliper. Analysis of variance (ANOVA, intraclass correlation coefficient (ICC and Bland-Altman were used for evaluating accuracy and reliability (p<0.05. RESULTS: Excellent intraobserver reliability and good to high precision interobserver reliability values were found for linear measurements from CBCT 3D and multiplanar images. Measurements performed on multiplanar reconstructed images were more accurate than measurements in volume rendering compared with the gold standard. No statistically significant difference was found between voxel protocols, independently of the measurement method. CONCLUSIONS: Linear measurements on multiplanar images of 0.2 and 0.4 voxel are reliable and accurate when compared with direct caliper measurements. Caution should be taken in the volume rendering measurements, because the measurements were reliable, but not accurate for all variables. An increased voxel resolution did not result in greater accuracy of mandible measurements and would potentially provide increased patient radiation exposure.

  14. Initiation and propagation of complex 3D networks of cracks in heterogeneous quasi-brittle materials: Direct comparison between in situ testing-microCT experiments and phase field simulations

    Science.gov (United States)

    Nguyen, T. T.; Yvonnet, J.; Bornert, M.; Chateau, C.

    2016-10-01

    We provide the first direct comparisons, to our knowledge, of complex 3D micro cracking initiation and propagation in heterogeneous quasi-brittle materials modelled by the phase field numerical method and observed in X-ray microtomography images recorded during in situ mechanical testing. Some material parameters of the damage model, including the process zone (internal) length, are identified by an inverse approach combining experimental data and 3D simulations. A new technique is developed to study the micro cracking at a finer scale by prescribing the local displacements measured by digital volume correlation over the boundary of a small sub-volume inside the sample during the numerical simulations. The comparisons, performed on several samples of lightweight plaster and concrete, show a remarkable quantitative agreement between the 3D crack morphology obtained by the model and by the experiments, without any a priori knowledge about the location of the initiation of the cracks in the numerical model. The results indicate that the crack paths can be predicted in a fully deterministic way in spite of the highly random geometry of the microstructure and the brittle nature of its constituents.

  15. Comparison of 2D and 3D Imaging and Treatment Planning for Postoperative Vaginal Apex High-Dose Rate Brachytherapy for Endometrial Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Russo, James K. [Department of Radiation Oncology, Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina (United States); Armeson, Kent E. [Division of Biostatistics and Epidemiology, Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina (United States); Richardson, Susan, E-mail: srichardson@radonc.wustl.edu [Department of Radiation Oncology, Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri (United States)

    2012-05-01

    Purpose: To evaluate bladder and rectal doses using two-dimensional (2D) and 3D treatment planning for vaginal cuff high-dose rate (HDR) in endometrial cancer. Methods and Materials: Ninety-one consecutive patients treated between 2000 and 2007 were evaluated. Seventy-one and 20 patients underwent 2D and 3D planning, respectively. Each patient received six fractions prescribed at 0.5 cm to the superior 3 cm of the vagina. International Commission on Radiation Units and Measurements (ICRU) doses were calculated for 2D patients. Maximum and 2-cc doses were calculated for 3D patients. Organ doses were normalized to prescription dose. Results: Bladder maximum doses were 178% of ICRU doses (p < 0.0001). Two-cubic centimeter doses were no different than ICRU doses (p = 0.22). Two-cubic centimeter doses were 59% of maximum doses (p < 0.0001). Rectal maximum doses were 137% of ICRU doses (p < 0.0001). Two-cubic centimeter doses were 87% of ICRU doses (p < 0.0001). Two-cubic centimeter doses were 64% of maximum doses (p < 0.0001). Using the first 1, 2, 3, 4 or 5 fractions, we predicted the final bladder dose to within 10% for 44%, 59%, 83%, 82%, and 89% of patients by using the ICRU dose, and for 45%, 55%, 80%, 85%, and 85% of patients by using the maximum dose, and for 37%, 68%, 79%, 79%, and 84% of patients by using the 2-cc dose. Using the first 1, 2, 3, 4 or 5 fractions, we predicted the final rectal dose to within 10% for 100%, 100%, 100%, 100%, and 100% of patients by using the ICRU dose, and for 60%, 65%, 70%, 75%, and 75% of patients by using the maximum dose, and for 68%, 95%, 84%, 84%, and 84% of patients by using the 2-cc dose. Conclusions: Doses to organs at risk vary depending on the calculation method. In some cases, final dose accuracy appears to plateau after the third fraction, indicating that simulation and planning may not be necessary in all fractions. A clinically relevant level of accuracy should be determined and further research conducted to address

  16. 3D printing for dummies

    CERN Document Server

    Hausman, Kalani Kirk

    2014-01-01

    Get started printing out 3D objects quickly and inexpensively! 3D printing is no longer just a figment of your imagination. This remarkable technology is coming to the masses with the growing availability of 3D printers. 3D printers create 3-dimensional layered models and they allow users to create prototypes that use multiple materials and colors.  This friendly-but-straightforward guide examines each type of 3D printing technology available today and gives artists, entrepreneurs, engineers, and hobbyists insight into the amazing things 3D printing has to offer. You'll discover methods for

  17. Comparison of open and closed U-Pu equilibrium fuel cycles for Generation-IV fast reactors with the EQL3D procedure

    Energy Technology Data Exchange (ETDEWEB)

    Krepel, Jiri, E-mail: Jiri.Krepel@psi.ch [Laboratory for Reactor Physics and Systems Behaviour, Paul Scherrer Institut, 5232 Villigen PSI (Switzerland); Pelloni, Sandro; Mikityuk, Konstantin [Laboratory for Reactor Physics and Systems Behaviour, Paul Scherrer Institut, 5232 Villigen PSI (Switzerland)

    2012-09-15

    Highlights: Black-Right-Pointing-Pointer We analyze open and closed fuel cycle of GFR, SFR, and LFR cores by means of ERANOS based EQL3D procedure. Black-Right-Pointing-Pointer Equilibrium of open and closed fuel cycles were compared in terms of their performance and safety parameters. Black-Right-Pointing-Pointer All three cores act in equilibrium closed cycle as iso-breeder and have similar fuel composition. Black-Right-Pointing-Pointer In spite of the same fuel composition the Dopper constants and void reactivities strongly differ between the cores. Black-Right-Pointing-Pointer All three systems seem capable, from neutronics point of view, for the fuel cycle closure. - Abstract: The advanced fast reactors of the fourth generation should enable an indirect burning of poorly fissile {sup 238}U through {sup 239}Pu breeding and recycling of the actinides from their own spent fuel. The recycling or actually the fuel cycle closure can significantly reduce the amount of long-lived radioactive waste and the {sup 238}U burning can multiply the sustainability of the uranium fueled reactors. Regular periodic operation with the fuel recycling converges to an equilibrium cycle. To enable its simulation a numerical tool named equilibrium fuel cycle procedure for fast reactors (EQL3D) was developed in the FAST group of LRS at Paul Scherrer Institut. The procedure is based on the ERANOS code and can be used to yield the description of two basic situations: the equilibrium of an open fuel cycle and the equilibrium of a closed fuel cycle. The goals of the present study are (i) to apply EQL3D to the Gas-cooled Fast Reactor (GFR), Sodium-cooled Fast Reactor (SFR), and Lead-cooled Fast Reactor (LFR), (ii) to simulate and confirm the GFR, SFR, and LFR neutronics capability for closed fuel cycle, and (iii) to evaluate and compare the equilibrium cycle safety and performance parameters. The EQL3D capability enables to characterize the equilibrium cycle for complex reloading patterns

  18. Comparison of dosimeter response: ionization chamber, TLD, and Gafchromic EBT2 film in 3D-CRT, IMRT, and SBRT techniques for lung cancer

    Science.gov (United States)

    Fitriandini, A.; Wibowo, W. E.; Pawiro, S. A.

    2016-03-01

    This research was conducted by measuring point dose in the target area (lungs), heart, and spine using four dosimeters (PTW N30013, Exradin A16, TLD, and the Gafchromic EBT2 film). The measurement was performed in CIRS 002LFC thorax phantom. The main objective of this study was to compare the dosimetry of those different systems. Dose measurements performed only in a single fraction of irradiation. The measurements result shown that TLD has the least accuracy and precision. As the effect of volume averaging, ionization chamber reaches the discrepancy value up to -13.30% in the target area. EBT2 film has discrepancy value of <1% in the 3D-CRT and IMRT techniques. This dosimeter is proposed to be an appropriate alternative dosimeter to be used at point dose verification.

  19. Comparison of 3D kinetic and hydrodynamic models to ROSINA-COPS measurements of the neutral coma of 67P/Churyumov-Gerasimenko

    Science.gov (United States)

    Bieler, Andre; Altwegg, Kathrin; Balsiger, Hans; Berthelier, Jean-Jacques; Calmonte, Ursina; Combi, Michael; De Keyser, Johan; Fiethe, Björn; Fougere, Nicolas; Fuselier, Stephen; Gasc, Sébastien; Gombosi, Tamas; Hansen, Kenneth; Hässig, Myrtha; Huang, Zhenguang; Jäckel, Annette; Jia, Xianzhe; Le Roy, Lena; Mall, Urs A.; Rème, Henri; Rubin, Martin; Tenishev, Valeriy; Tóth, Gábor; Tzou, Chia-Yu; Wurz, Peter

    2015-11-01

    67P/Churyumov-Gerasimenko (67P) is a Jupiter-family comet and the object of investigation of the European Space Agency mission Rosetta. This report presents the first full 3D simulation results of 67P's neutral gas coma. In this study we include results from a direct simulation Monte Carlo method, a hydrodynamic code, and a purely geometric calculation which computes the total illuminated surface area on the nucleus. All models include the triangulated 3D shape model of 67P as well as realistic illumination and shadowing conditions. The basic concept is the assumption that these illumination conditions on the nucleus are the main driver for the gas activity of the comet. As a consequence, the total production rate of 67P varies as a function of solar insolation. The best agreement between the model and the data is achieved when gas fluxes on the night side are in the range of 7% to 10% of the maximum flux, accounting for contributions from the most volatile components. To validate the output of our numerical simulations we compare the results of all three models to in situ gas number density measurements from the ROSINA COPS instrument. We are able to reproduce the overall features of these local neutral number density measurements of ROSINA COPS for the time period between early August 2014 and January 1 2015 with all three models. Some details in the measurements are not reproduced and warrant further investigation and refinement of the models. However, the overall assumption that illumination conditions on the nucleus are at least an important driver of the gas activity is validated by the models. According to our simulation results we find the total production rate of 67P to be constant between August and November 2014 with a value of about 1 × 1026 molecules s-1.

  20. Comparison of stereotactic radiosurgery and fractionated stereotactic radiotherapy of acoustic neurinomas according to 3-D tumor volume shrinkage and quality of life

    Energy Technology Data Exchange (ETDEWEB)

    Henzel, Martin; Engenhart-Cabillic, Rita [Dept. of Radiation Oncology, Philipps Univ. Marburg (Germany); Hamm, Klaus; Surber, Gunnar; Kleinert, Gabriele [Dept. of Stereotactic Neurosurgery and Radiosurgery, HELIOS Klinikum, Erfurt (Germany); Sitter, Helmut [Dept. of Theoretical Surgery, Philipps Univ. Marburg (Germany); Gross, Markus W. [Dept. of Radiation Oncology, Philipps Univ. Marburg (Germany); Dept. of Radio-Oncology, Univ. Hospital of Basel (Switzerland)

    2009-09-15

    Background and purpose: stereotactic radiosurgery (SRS) and also fractionated stereotactic radiotherapy (SRT) offer high local control (LC) rates (> 90%). This study aimed to evaluate three-dimensional (3-D) tumor volume (TV) shrinkage and to assess quality of life (QoL) after SRS/SRT. Patients and methods: from 1999 to 2005, 35/74 patients were treated with SRS, and 39/74 with SRT. Median age was 60 years. Treatment was delivered by a linear accelerator. Median single dose was 13 Gy (SRS) or 54 Gy (SRT). Patients were followed up {>=} 12 months after SRS/SRT. LC and toxicity were evaluated by clinical examinations and magnetic resonance imaging. 3-D TV shrinkage was evaluated with the planning system. QoL was assessed using the questionnaire Short Form-36. Results: Median follow-up was 50/36 months (SRS/SRT). Actuarial 5-year freedom from progression/overall survival was 88.1%/100% (SRS), and 87.5%/87.2% (SRT). TV shrinkage was 15.1%/40.7% (SRS/SRT; p = 0.01). Single dose (< 13 Gy) was the only determinant factor for TV shrinkage after SRS (p = 0.001). Age, gender, initial TV, and previous operations did not affect TV shrinkage. Acute or late toxicity ({>=} grade 3) was never seen. Concerning QoL, no significant differences were observed after SRS/SRT. Previous operations and gender did not affect QoL (p > 0.05). Compared with the German normal population, patients had worse values for all domains except for mental health. Conclusion: TV shrinkage was significantly higher after SRT than after SRS. Main symptoms were not affected by SRS/SRT. Retrospectively, QoL was neither affected by SRS nor by SRT. (orig.)

  1. Validity of Intraoral Scans Compared with Plaster Models: An In-Vivo Comparison of Dental Measurements and 3D Surface Analysis

    Science.gov (United States)

    2016-01-01

    Purpose Dental measurements have been commonly taken from plaster dental models obtained from alginate impressions can. Through the use of an intraoral scanner, digital impressions now acquire the information directly from the mouth. The purpose of this study was to determine the validity of the intraoral scans compared to plaster models. Materials and Methods Two types of dental models (intraoral scan and plaster model) of 20 subjects were included in this study. The subjects had impressions taken of their teeth and made as plaster model. In addition, their mouths were scanned with the intraoral scanner and the scans were converted into digital models. Eight transverse and 16 anteroposterior measurements, 24 tooth heights and widths were recorded on the plaster models with a digital caliper and on the intraoral scan with 3D reverse engineering software. For 3D surface analysis, the two models were superimposed by using best-fit algorithm. The average differences between the two models at all points on the surfaces were computed. Paired t-test and Bland-Altman plot were used to determine the validity of measurements from the intraoral scan compared to those from the plaster model. Results There were no significant differences between the plaster models and intraoral scans, except for one measurement of lower intermolar width. The Bland-Altman plots of all measurements showed that differences between the two models were within the limits of agreement. The average surface difference between the two models was within 0.10 mm. Conclusions The results of the present study indicate that the intraoral scans are clinically acceptable for diagnosis and treatment planning in dentistry and can be used in place of plaster models. PMID:27304976

  2. Martian terrain - 3D

    Science.gov (United States)

    1997-01-01

    This area of terrain near the Sagan Memorial Station was taken on Sol 3 by the Imager for Mars Pathfinder (IMP). 3D glasses are necessary to identify surface detail.The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.' It stands 1.8 meters above the Martian surface, and has a resolution of two millimeters at a range of two meters.Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  3. 3D monitor

    OpenAIRE

    Szkandera, Jan

    2009-01-01

    Tato bakalářská práce se zabývá návrhem a realizací systému, který umožní obraz scény zobrazovaný na ploše vnímat prostorově. Prostorové vnímání 2D obrazové informace je umožněno jednak stereopromítáním a jednak tím, že se obraz mění v závislosti na poloze pozorovatele. Tato práce se zabývá hlavně druhým z těchto problémů. This Bachelor's thesis goal is to design and realize system, which allows user to perceive 2D visual information as three-dimensional. 3D visual preception of 2D image i...

  4. 3D game environments create professional 3D game worlds

    CERN Document Server

    Ahearn, Luke

    2008-01-01

    The ultimate resource to help you create triple-A quality art for a variety of game worlds; 3D Game Environments offers detailed tutorials on creating 3D models, applying 2D art to 3D models, and clear concise advice on issues of efficiency and optimization for a 3D game engine. Using Photoshop and 3ds Max as his primary tools, Luke Ahearn explains how to create realistic textures from photo source and uses a variety of techniques to portray dynamic and believable game worlds.From a modern city to a steamy jungle, learn about the planning and technological considerations for 3D modelin

  5. X3D: Extensible 3D Graphics Standard

    OpenAIRE

    Daly, Leonard; Brutzman, Don

    2007-01-01

    The article of record as published may be located at http://dx.doi.org/10.1109/MSP.2007.905889 Extensible 3D (X3D) is the open standard for Web-delivered three-dimensional (3D) graphics. It specifies a declarative geometry definition language, a run-time engine, and an application program interface (API) that provide an interactive, animated, real-time environment for 3D graphics. The X3D specification documents are freely available, the standard can be used without paying any royalties,...

  6. Comparison of publically available Moho depth and crustal thickness grids with newly derived grids by 3D gravity inversion for the High Arctic region.

    Science.gov (United States)

    Lebedeva-Ivanova, Nina; Gaina, Carmen; Minakov, Alexander; Kashubin, Sergey

    2016-04-01

    We derived Moho depth and crustal thickness for the High Arctic region by 3D forward and inverse gravity modelling method in the spectral domain (Minakov et al. 2012) using lithosphere thermal gravity anomaly correction (Alvey et al., 2008); a vertical density variation for the sedimentary layer and lateral crustal variation density. Recently updated grids of bathymetry (Jakobsson et al., 2012), gravity anomaly (Gaina et al, 2011) and dynamic topography (Spasojevic & Gurnis, 2012) were used as input data for the algorithm. TeMAr sedimentary thickness grid (Petrov et al., 2013) was modified according to the most recently published seismic data, and was re-gridded and utilized as input data. Other input parameters for the algorithm were calibrated using seismic crustal scale profiles. The results are numerically compared with publically available grids of the Moho depth and crustal thickness for the High Arctic region (CRUST 1 and GEMMA global grids; the deep Arctic Ocean grids by Glebovsky et al., 2013) and seismic crustal scale profiles. The global grids provide coarser resolution of 0.5-1.0 geographic degrees and not focused on the High Arctic region. Our grids better capture all main features of the region and show smaller error in relation to the seismic crustal profiles compare to CRUST 1 and GEMMA grids. Results of 3D gravity modelling by Glebovsky et al. (2013) with separated geostructures approach show also good fit with seismic profiles; however these grids cover the deep part of the Arctic Ocean only. Alvey A, Gaina C, Kusznir NJ, Torsvik TH (2008). Integrated crustal thickness mapping and plate recon-structions for the high Arctic. Earth Planet Sci Lett 274:310-321. Gaina C, Werner SC, Saltus R, Maus S (2011). Circum-Arctic mapping project: new magnetic and gravity anomaly maps of the Arctic. Geol Soc Lond Mem 35, 39-48. Glebovsky V.Yu., Astafurova E.G., Chernykh A.A., Korneva M.A., Kaminsky V.D., Poselov V.A. (2013). Thickness of the Earth's crust in the

  7. 扰相梯度双回波序列与3D-TOF-MRA及SWI在显示正常颅内主要动、静脉的比较%Comparison of FLASH T2 dual-echo MRI sequence with 3D TOF MRA and SWI for evaluation of the cerebral circulation

    Institute of Scientific and Technical Information of China (English)

    蒋伟; 张泳欣; 黄穗乔; 钟镜联; 叶瑞心

    2013-01-01

    目的:探讨磁共振扰相梯度双回波序列(dual-echo sequence)同时获得动脉成像及静脉成像的能力。方法选取11例健康志愿者行双回波序列、3D-TOF-MRA及SWI序列检查。将双回波序列所获得的动脉成像对大脑前、中、后动脉各段显示效果与3D-TOF-MRA成像效果比较;同时所获得的静脉成像对脑深部静脉的显示效果与SWI成像效果比较。结果双回波与3D-TOF MRA序列对双侧大脑前动脉A1~A4段、大脑中动脉M1~M2段、大脑后动脉P1~P3段显示效果无明显差异(P>0.05)。两成像方法对双侧大脑前动脉A5段、大脑中动脉M3段、M4段、M5段及大脑后动脉P4段显示效果具有明显统计学差异(P<0.05),3D-TOF MRA序列对以上动脉段的显示效果优于双回波序列。双回波序列与SWI序列对大脑大静脉、双侧大脑内静脉、双侧透明隔静脉、双侧丘纹上静脉的显示效果无明显差异(P>0.05)。而两成像序列对双侧脉络膜静脉的显示效果具有明显统计学差异(P<0.01),SWI序列对其显示效果优于双回波序列。结论双回波序列适合于检出多数大脑内动、静脉,但对小的动脉远端检查以常规3D-TOF-MRA为好;双回波序列亦适合检出多数脑深部静脉,但对于微小静脉的检出以常规SWI更好。%Objective To compare the FLASH T2 dual-echo MRI sequence with 3D TOF MRA and susceptibility-weighted imaging(SWI)for evaluation of the cerebral circulation.Methods Eleven healthy volunteers underwent FLASH T2 dual-echo sequence,3D-TOF-MRA and SWI.The visibility of the cerebral arteries and deep cerebral veins was compared.Results Most of the cerebral arteries and deep cerebral veins were equally well seen on the dual-echo sequence in comparison with the 3D TOF MRA and SWI,respectively (P>0.05).The 3D-TOF-MRA was significantly better than the dual-echo sequence for demonstrating the A5 segment of the anterior cerebral

  8. 3D Printing an Octohedron

    OpenAIRE

    Aboufadel, Edward F.

    2014-01-01

    The purpose of this short paper is to describe a project to manufacture a regular octohedron on a 3D printer. We assume that the reader is familiar with the basics of 3D printing. In the project, we use fundamental ideas to calculate the vertices and faces of an octohedron. Then, we utilize the OPENSCAD program to create a virtual 3D model and an STereoLithography (.stl) file that can be used by a 3D printer.

  9. The Galicia 3D experiment: an Introduction.

    Science.gov (United States)

    Reston, Timothy; Martinez Loriente, Sara; Holroyd, Luke; Merry, Tobias; Sawyer, Dale; Morgan, Julia; Jordan, Brian; Tesi Sanjurjo, Mari; Alexanian, Ara; Shillington, Donna; Gibson, James; Minshull, Tim; Karplus, Marianne; Bayracki, Gaye; Davy, Richard; Klaeschen, Dirk; Papenberg, Cord; Ranero, Cesar; Perez-Gussinye, Marta; Martinez, Miguel

    2014-05-01

    In June and July 2013, scientists from 8 institutions took part in the Galicia 3D seismic experiment, the first ever crustal -scale academic 3D MCS survey over a rifted margin. The aim was to determine the 3D structure of a critical portion of the west Galicia rifted margin. At this margin, well-defined tilted fault blocks, bound by west-dipping faults and capped by synrift sediments are underlain by a bright reflection, undulating on time sections, termed the S reflector and thought to represent a major detachment fault of some kind. Moving west, the crust thins to zero thickness and mantle is unroofed, as evidence by the "Peridotite Ridge" first reported at this margin, but since observed at many other magma-poor margins. By imaging such a margin in detail, the experiment aimed to resolve the processes controlling crustal thinning and mantle unroofing at a type example magma poor margin. The experiment set out to collect several key datasets: a 3D seismic reflection volume measuring ~20x64km and extending down to ~14s TWT, a 3D ocean bottom seismometer dataset suitable for full wavefield inversion (the recording of the complete 3D seismic shots by 70 ocean bottom instruments), the "mirror imaging" of the crust using the same grid of OBS, a single 2D combined reflection/refraction profile extending to the west to determine the transition from unroofed mantle to true oceanic crust, and the seismic imaging of the water column, calibrated by regular deployment of XBTs to measure the temperature structure of the water column. We collected 1280 km2 of seismic reflection data, consisting of 136533 shots recorded on 1920 channels, producing 260 million seismic traces, each ~ 14s long. This adds up to ~ 8 terabytes of data, representing, we believe, the largest ever academic 3D MCS survey in terms of both the area covered and the volume of data. The OBS deployment was the largest ever within an academic 3D survey.

  10. Salient Local 3D Features for 3D Shape Retrieval

    CERN Document Server

    Godil, Afzal

    2011-01-01

    In this paper we describe a new formulation for the 3D salient local features based on the voxel grid inspired by the Scale Invariant Feature Transform (SIFT). We use it to identify the salient keypoints (invariant points) on a 3D voxelized model and calculate invariant 3D local feature descriptors at these keypoints. We then use the bag of words approach on the 3D local features to represent the 3D models for shape retrieval. The advantages of the method are that it can be applied to rigid as well as to articulated and deformable 3D models. Finally, this approach is applied for 3D Shape Retrieval on the McGill articulated shape benchmark and then the retrieval results are presented and compared to other methods.

  11. Comparison of 16 slice multi-detector computed tomography and breath hold 3D magnetic resonance angiography in the detection of coronary stenosis

    Institute of Scientific and Technical Information of China (English)

    Xin LIU; Zulong CAI; Youquan CAI; Shaohong ZHAO; Ningyu AN; Yuangui GAO

    2006-01-01

    Objective To compare 16-slice multi-detector spiral computed tomography (MDCT) and breathhold 3D magnetic resonance (MR) coronary angiography in the visualization of coronary arteries and the accuracy of detecting significant (> 50%) coronary stenoses in patients with suspected coronary artery disease. Methods Forty patients were examined by 16-slice CT (GE, Lightspeedl6)and MR (GE,Twinspeed) within 3 days; 31 of them underwent conventional coronary angiography (CAG) within 2 weeks after CT and MR scan. CT was performed with 16× 1.25 mm detector collimation, 0.5 s rotation time and images were reconstructed at 60%-75% of the cardiac cycle. MR was performed with breath hold 3D FIESTA (TR4.0 ms, TE1.7 ms, flip angle 65, slice thickness 3 mm, FOV 280 mm, matrix 256× 192). Mean heart rate was 63 ± 5.8 bpm and β-blocker was used in 24 patients. MR and CT image quality was evaluated in 9 coronary segments (RCA1, RCA2, RCA3, LM, LAD1, LAD2, LAD3, LCX1, LCX2) using a four-point grading scale.Sensitivity, specificity, positive predictive value, negative predictive value and accuracy were calculated for detection of significant stenosis using CAG as the gold standard. Results 16-slice CT showed higher image quality in most coronary segments except RCA2.Forty-three segments were diagnosed as significant stenosis by CAG, 36 and 27 of these were correctly detected by CT and MR respectively. Sensitivity, specificity, positive predictive value, and negative predictive value of 16-slice CT and MR for detecting significant stenosis were 83 %, 84 %, 49 %, 97 % and 63 %, 90 %, 55 %, 93 %, respectively. Conclusion Sixteen-slice CT showed higher image quality in most coronary segments excepted for middle RCA. 16-slice CT had higher sensitivity than MR for detection of coronary significant stenosis, whereas MR had higher specificity than CT. Both CT and MR showed high negative predictive value,which is useful for excluding coronary stenosis in symptomatic patients.

  12. Comparison of standard 4-row versus 6-row 3-D linear cutter stapler in creation of gastrointestinal system anastomoses: a prospective randomized trial

    Science.gov (United States)

    Sozutek, Alper; Colak, Tahsin; Dag, Ahmet; Olmez, Tolga

    2012-01-01

    OBJECTIVE: This prospective study was conducted to compare the clinical outcomes of a 6-row 3-D linear cutter with the standard 4-row linear cutter in patients who underwent elective gastrointestinal surgery anastomosis. METHOD: Patients who underwent elective open gastrointestinal surgery that included stapled anastomosis using a linear cutter (Proximate®, Ethicon Endo-Surgery, Cincinnati, OH) between January 2011 and May 2011 were included in the study. The patients were randomly assigned to two groups according to the linear cutter that was used in the surgery: the standard 4-row cutter (the S group) or the new 6-row cutter (the N group). The groups were compared based on the patient demographic data, the laboratory parameters, the preoperative diagnosis, the surgery performed, the operation time, intra- or postoperative complications, the time to oral tolerance and the length of the hospital stay. RESULTS: The S group included 11 male and nine female patients with a mean age of 65±12 (35-84) years, while the N group included 13 male and eight female patients with a mean age of 62±11 (46-79) years (p = 0.448, p = 0.443, respectively). Anastomotic line bleeding was observed in eight (40%) patients in the S group and in one (4.7%) patient in the N group (p = 0.006). Dehiscence of the anastomosis line was observed in two (10%) patients in the S group and none in the N group (p = 0.131). Anastomotic leakage developed in three (15%) patients in the S group and in one (4.7%) patient in the N group (p = 0.269). The mean hospital stay was 12.65±6.1 days in the S group and 9.52±2.9 days in the N group (p = 0.043). CONCLUSION: The 6-row 3-D linear cutter is a safe and easily applied instrument that can be used to create anastomoses in gastrointestinal surgery. The new stapler provides some usage benefits and is also superior to the standard linear cutter with regard to anastomotic line bleeding. PMID:23018300

  13. 3D modelling and recognition

    OpenAIRE

    Rodrigues, Marcos; Robinson, Alan; Alboul, Lyuba; Brink, Willie

    2006-01-01

    3D face recognition is an open field. In this paper we present a method for 3D facial recognition based on Principal Components Analysis. The method uses a relatively large number of facial measurements and ratios and yields reliable recognition. We also highlight our approach to sensor development for fast 3D model acquisition and automatic facial feature extraction.

  14. What causes the large extensions of red-supergiant atmospheres? Comparisons of interferometric observations with 1-D hydrostatic, 3-D convection, and 1-D pulsating model atmospheres

    CERN Document Server

    Arroyo-Torres, B; Chiavassa, A; Scholz, M; Freytag, B; Marcaide, J M; Hauschildt, P H; Wood, P R; Abellan, F J

    2015-01-01

    We present the atmospheric structure and the fundamental parameters of three red supergiants, increasing the sample of RSGs observed by near-infrared spectro-interferometry. Additionally, we test possible mechanisms that may explain the large observed atmospheric extensions of RSGs. We carried out spectro-interferometric observations of 3 RSGs in the near-infrared K-band with the VLTI/AMBER instrument at medium spectral resolution. To comprehend the extended atmospheres, we compared our observational results to predictions by available hydrostatic PHOENIX, available 3-D convection, and new 1-D self-excited pulsation models of RSGs. Our near-infrared flux spectra are well reproduced by the PHOENIX model atmospheres. The continuum visibility values are consistent with a limb-darkened disk as predicted by the PHOENIX models, allowing us to determine the angular diameter and the fundamental parameters of our sources. Nonetheless, in the case of V602 Car and HD 95686, the PHOENIX model visibilities do not predict ...

  15. A 3D-CTM with detailed online PSC microphysics: Heterogeneous chemistry and comparison with CALIPSO satellite observations during Antarctic winters

    Science.gov (United States)

    Viscardy, S.; Errera, Q.; Pitts, M. C.; Daerden, F.

    2012-04-01

    A 3-D Chemical Transport Model (CTM), with full stratospheric chemistry and driven by the ECMWF temperature and wind fields, is coupled to the PSC microphysical model PSCBox. This interactively describes the formation and evolution of four types of PSC particles (STS, SAT, NAT, and ice) through relevant microphysical processes. The number density and composition of each type of particles are computed for a binned size distribution. As a result, the calculation of surface area densities is accurately performed, of which the computation of the heterogeneous reaction constants takes advantage. The explicit computation of the particle size distributions allows obtaining the same optical properties as those measured by CALIPSO. Hence, the evolution of PSC coverage and composition will be studied and compared to the CALIPSO observations during Antarctic winters. The relationship between the presence of PSCs and the heterogeneous chemistry will also be investigated. In particular, two issues will be considered: (i) how the ozone depletion is related to the PSC coverage, and (ii) how each PSC particle type contributes to the chlorine activation.

  16. Near-infrared spectro-interferometry of Mira variables and comparisons to 1D dynamic model atmospheres and 3D convection simulations

    CERN Document Server

    Wittkowski, M; Freytag, B; Scholz, M; Hoefner, S; Karovicova, I; Whitelock, P A

    2016-01-01

    We obtained a total of 20 near-infrared K-band spectro-interferometric snapshot observations of the Mira variables o Cet, R Leo, R Aqr, X Hya, W Vel, and R Cnc with a spectral resolution of about 1500. We compared observed flux and visibility spectra with predictions by CODEX 1D dynamic model atmospheres and with azimuthally averaged intensities based on CO5BOLD 3D dynamic model atmospheres including convection. Our visibility data confirm the presence of spatially extended molecular atmospheres located above the continuum radii with large-scale inhomogeneities or clumps that contribute a few percent of the total flux. The detailed structure of the inhomogeneities or clumps show a variability on time scales of 3 months and above. Both modeling attempts provided satisfactory fits to our data. In particular, they are both consistent with the observed decrease in the visibility function at molecular bands of water vapor and CO, indicating a spatially extended molecular atmosphere. Observational variability phase...

  17. Magnetic resonance imaging of the knee at 3 and 7 Tesla: a comparison using dedicated multi-channel coils and optimised 2D and 3D protocols

    International Nuclear Information System (INIS)

    To show the feasibility and possible superiority of two 7 Tesla knee protocols (''7 T high resolution'' and ''7 T quick'') using a new 28-channel knee coil compared to an optimised 3 T knee protocol using an 8-channel knee coil. The study was approved by the ethics committee. Both 3 T and 7 T MRI of the knee were performed in 10 healthy volunteers (29.6 ± 7.9 years), with two 2D sequences (PD-TSE and T1-SE) and three isotropic 3D sequences (TRUFI, FLASH and PD-TSE SPACE). Quantitative contrast-to-noise ratio (CNR) and qualitative evaluations were performed by different readers, and intra- and inter-rater agreement was assessed. The signal-to-noise ratio (SNR) as well as the CNR values for cartilage-bone, cartilage-fluid, cartilage-menisci and menisci-fluid were, in most cases, higher at 7 T compared to 3 T, and the 7 T quick measurement was slightly superior compared to the 7 T high-resolution measurement. The results of the subjective qualitative analysis were higher for the 7 T measurements compared to the 3 T measurements. Inter- and intra-observer reliability was high (0.884-0.999). Through higher field strength and an optimal coil, resolution at 7 T can be increased and acquisition time can be reduced, with superior quantitative and comparable qualitative results compared to 3 T. (orig.)

  18. Semi-quantitative assessment of right ventricular function in comparison to a 3D volumetric approach: A cardiovascular magnetic resonance study

    Energy Technology Data Exchange (ETDEWEB)

    Nijveldt, Robin; Germans, Tjeerd; Rossum, Albert C. van [VU University Medical Center, Department of Cardiology, Amsterdam (Netherlands); Interuniversity Cardiology Institute of the Netherlands, Utrecht (Netherlands); McCann, Gerald P. [University Hospitals Leicester, Department of Cardiology, Leicester (United Kingdom); Beek, Aernout M. [VU University Medical Center, Department of Cardiology, Amsterdam (Netherlands)

    2008-11-15

    Right ventricular (RV) volume measurements with cardiovascular magnetic resonance (CMR) is considered the gold standard, but acquisition and analysis remain time-consuming. The aim of our study was therefore to investigate the accuracy and performance of a semi-quantitative assessment of RV function in CMR, compared to the standard quantitative approach. Seventy-five subjects with pulmonary hypertension (15), anterior myocardial infarction (15), inferior myocardial infarction (15), Brugada syndrome (15) and normal subjects (15) underwent cine CMR. RV end-systolic and end-diastolic volumes were determined to calculate RV ejection fraction (EF). Four-chamber cine images were used to measure tricuspid annular plane systolic excursion (TAPSE). RV fractional shortening (RVFS) was calculated by dividing TAPSE by the RV end-diastolic length. RV EF correlated significantly with TAPSE (r = 0.62, p < 0.01) and RVFS (r = 0.67, p < 0.01). Sensitivity to predict RV dysfunction was comparable between TAPSE and RVFS, with higher specificity for RVFS, but comparable areas under the ROC curve. Intra- and inter-observer variability of RV EF was better than TAPSE (3%/4% versus 7%/15%, respectively). For routine screening in clinical practice, TAPSE and RVFS seem reliable and easy methods to identify patients with RV dysfunction. The 3D volumetric approach is preferred to assess RV function for research purposes or to evaluate treatment response. (orig.)

  19. Comparison of 32 x 128 and 32 x 32 Geiger-mode APD FPAs for single photon 3D LADAR imaging

    Science.gov (United States)

    Itzler, Mark A.; Entwistle, Mark; Owens, Mark; Patel, Ketan; Jiang, Xudong; Slomkowski, Krystyna; Rangwala, Sabbir; Zalud, Peter F.; Senko, Tom; Tower, John; Ferraro, Joseph

    2011-05-01

    We present results obtained from 3D imaging focal plane arrays (FPAs) employing planar-geometry InGaAsP/InP Geiger-mode avalanche photodiodes (GmAPDs) with high-efficiency single photon sensitivity at 1.06 μm. We report results obtained for new 32 x 128 format FPAs with 50 μm pitch and compare these results to those obtained for 32 x 32 format FPAs with 100 μm pitch. We show excellent pixel-level yield-including 100% pixel operability-for both formats. The dark count rate (DCR) and photon detection efficiency (PDE) performance is found to be similar for both types of arrays, including the fundamental DCR vs. PDE tradeoff. The optical crosstalk due to photon emission induced by pixel-level avalanche detection events is found to be qualitatively similar for both formats, with some crosstalk metrics for the 32 x 128 format found to be moderately elevated relative to the 32 x 32 FPA results. Timing jitter measurements are also reported for the 32 x 128 FPAs.

  20. 3D movement correction of CT brain perfusion image data of patients with acute ischemic stroke

    Energy Technology Data Exchange (ETDEWEB)

    Fahmi, Fahmi [Academic Medical Center, Department of Biomedical Engineering and Physics, Amsterdam (Netherlands); University of Sumatera Utara, Department of Electrical Engineering, Medan (Indonesia); Marquering, Henk A.; Streekstra, Geert J. [Academic Medical Center, Department of Biomedical Engineering and Physics, Amsterdam (Netherlands); Academic Medical Center, Department of Radiology, Amsterdam (Netherlands); Borst, Jordi; Beenen, Ludo F.M.; Majoie, Charles B.L. [Academic Medical Center, Department of Radiology, Amsterdam (Netherlands); Niesten, Joris M.; Velthuis, Birgitta K. [University Medical Center Utrecht, Department of Radiology, Utrecht (Netherlands); VanBavel, Ed [Academic Medical Center, Department of Biomedical Engineering and Physics, Amsterdam (Netherlands); Collaboration: on behalf of the DUST study

    2014-06-15

    Head movement during CT brain perfusion (CTP) acquisition can deteriorate the accuracy of CTP analysis. Most CTP software packages can only correct in-plane movement and are limited to small ranges. The purpose of this study is to validate a novel 3D correction method for head movement during CTP acquisition. Thirty-five CTP datasets that were classified as defective due to head movement were included in this study. All CTP time frames were registered with non-contrast CT data using a 3D rigid registration method. Location and appearance of ischemic area in summary maps derived from original and registered CTP datasets were qualitative compared with follow-up non-contrast CT. A quality score (QS) of 0 to 3 was used to express the degree of agreement. Furthermore, experts compared the quality of both summary maps and assigned the improvement score (IS) of the CTP analysis, ranging from -2 (much worse) to 2 (much better). Summary maps generated from corrected CTP significantly agreed better with appearance of infarct on follow-up CT with mean QS 2.3 versus mean QS 1.8 for summary maps from original CTP (P = 0.024). In comparison to original CTP data, correction resulted in a quality improvement with average IS 0.8: 17 % worsened (IS = -2, -1), 20 % remained unchanged (IS = 0), and 63 % improved (IS = +1, +2). The proposed 3D movement correction improves the summary map quality for CTP datasets with severe head movement. (orig.)

  1. Evaluation of left atrial function by multidetector computed tomography before left atrial radiofrequency-catheter ablation: Comparison of a manual and automated 3D volume segmentation method

    Energy Technology Data Exchange (ETDEWEB)

    Wolf, Florian, E-mail: florian.wolf@meduniwien.ac.a [Department of Radiology, Medical University of Vienna, Vienna (Austria); Ourednicek, Petr [Philips Medical Systems, Prague (Czech Republic); Loewe, Christian [Department of Radiology, Medical University of Vienna, Vienna (Austria); Richter, Bernhard; Goessinger, Heinz David; Gwechenberger, Marianne [Department of Cardiology, Medical University of Vienna, Vienna (Austria); Plank, Christina; Schernthaner, Ruediger Egbert; Toepker, Michael; Lammer, Johannes [Department of Radiology, Medical University of Vienna, Vienna (Austria); Feuchtner, Gudrun M. [Department of Radiology, Innsbruck Medical University, Innsbruck (Austria); Institute of Diagnostic Radiology, University Hospital Zurich (Switzerland)

    2010-08-15

    Introduction: The purpose of this study was to compare a manual and automated 3D volume segmentation tool for evaluation of left atrial (LA) function by 64-slice multidetector-CT (MDCT). Methods and materials: In 33 patients with paroxysmal atrial fibrillation a MDCT scan was performed before radiofrequency-catheter ablation. Atrial function (minimal volume (LAmin), maximal volume (LAmax), stroke volume (SV), ejection fraction (EF)) was evaluated by two readers using a manual and an automatic tool and measurement time was evaluated. Results: Automated LA volume segmentation failed in one patient due to low LA enhancement (103HU). Mean LAmax, LAmin, SV and EF were 127.7 ml, 93 ml, 34.7 ml, 27.1% by the automated, and 122.7 ml, 89.9 ml, 32.8 ml, 26.3% by the manual method with no significant difference (p > 0.05) and high Pearsons correlation coefficients (r = 0.94, r = 0.94, r = 0.82 and r = 0.85, p < 0.0001), respectively. The automated method was significantly faster (p < 0.001). Interobserver variability was low for both methods with Pearson's correlation coefficients between 0.98 and 0.99 (p < 0.0001). Conclusions: Evaluation of LA volume and function with 64-slice MDCT is feasible with a very low interobserver variability. The automatic method is as accurate as the manual method but significantly less time consuming permitting a routine use in clinical practice before RF-catheter ablation.

  2. Comparison of measurements from digital cephalometric radiographs and 3D MDCT-synthetized cephalometric radiographs and the effect of head position

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Mi Ja; Choi, Bo Ram; Huh, Kyung Hoe; Yi, Won Jin; Heo, Min Suk; Lee, Sam Sun; Choi, Soon Chul [School of Dentistry, Seoul National University, Seoul (Korea, Republic of)

    2009-09-15

    To investigate the reproducibilities and compare the measurements in digital and MDCT-synthesized cephalometric radiograph, and to investigate the effect of head position on the measurement during imaging with MDCT. Twenty-two dry skulls (combined with mandible) were used in this study. Conventional digital cephalometric radiograph was taken in standard position, and MDCT was taken in standard position and two rotated position (10 .deg. C left rotation and 10 .deg. C right tilting). MDCT data were imported in OnDemand and lateral cephalometric radiograph were synthesized from 3D virtual models. Two types of rotated MDCT data were synthesized with default mode and with corrected mode using both ear rods. For all six images, sixteen angular and eleven linear measurements were made in V-Ceph three times. Reproducibility of measurements was assessed using repeated measures ANOVA and ICC. Linear and angular measurements were compared between digital and five MDCTsynthesized images by Student t-test. All measurements in six types of cephalometric radiograph were not statistically different under ICC examination. Measurements were not different between digital and MDCT-synthesized images (P> .05). Measurements in MDCT-synthesized image in 10 .deg. C left rotation or 10 .deg. C right tilting position showed possibility of difference from digital image in some measurements, and possibility of improvement via realignment of head position using both ear rods. MDCT-synthesized cephalometric radiograph can substitute conventional cephalometric radiograph. The error on head position during imaging with MDCT have possibility that can produce measurement errors with MDCT-synthesized image, and these position error can be corrected by realignment of the head position using both ear rods.

  3. A comparison of 1D analytical model and 3D finite element analysis with experiments for a rosen-type piezoelectric transformer.

    Science.gov (United States)

    Boukazouha, F; Poulin-Vittrant, G; Tran-Huu-Hue, L P; Bavencoffe, M; Boubenider, F; Rguiti, M; Lethiecq, M

    2015-07-01

    This article is dedicated to the study of Piezoelectric Transformers (PTs), which offer promising solutions to the increasing need for integrated power electronics modules within autonomous systems. The advantages offered by such transformers include: immunity to electromagnetic disturbances; ease of miniaturisation for example, using conventional micro fabrication processes; and enhanced performance in terms of voltage gain and power efficiency. Central to the adequate description of such transformers is the need for complex analytical modeling tools, especially if one is attempting to include combined contributions due to (i) mechanical phenomena owing to the different propagation modes which differ at the primary and secondary sides of the PT; and (ii) electrical phenomena such as the voltage gain and power efficiency, which depend on the electrical load. The present work demonstrates an original one-dimensional (1D) analytical model, dedicated to a Rosen-type PT and simulation results are successively compared against that of a three-dimensional (3D) Finite Element Analysis (COMSOL Multiphysics software) and experimental results. The Rosen-type PT studied here is based on a single layer soft PZT (P191) with corresponding dimensions 18 mm × 3 mm × 1.5 mm, which operated at the second harmonic of 176 kHz. Detailed simulational and experimental results show that the presented 1D model predicts experimental measurements to within less than 10% error of the voltage gain at the second and third resonance frequency modes. Adjustment of the analytical model parameters is found to decrease errors relative to experimental voltage gain to within 1%, whilst a 2.5% error on the output admittance magnitude at the second resonance mode were obtained. Relying on the unique assumption of one-dimensionality, the present analytical model appears as a useful tool for Rosen-type PT design and behavior understanding. PMID:25753623

  4. Comparison of rectal volume definition techniques and their influence on rectal toxicity in patients with prostate cancer treated with 3D conformal radiotherapy: a dose-volume analysis

    International Nuclear Information System (INIS)

    To evaluate the impact of four different rectum contouring techniques and rectal toxicities in patients with treated with 3D conformal radiotherapy (3DCRT). Clinical and dosimetric data were evaluated for 94 patients who received a total dose 3DCRT of 70 Gy, and rectal doses were compared in four different rectal contouring techniques: the prostate-containing CT sections (method 1); 1 cm above and below the planning target volume (PTV) (method 2); 110 mm starting from the anal verge (method 3); and from the anal verge to the sigmoid flexure (method 4). The percentage of rectal volume receiving RT doses (30–70 Gy) and minimum, mean rectal doses were assessed. Median age was 69 years. Percentage of rectal volume receiving high doses (≥ 70 Gy) were higher with the techniques that contoured smaller rectal volumes. In methods 2 and 3, the percentage of rectal volume receiving ≥ 70 Gy was significantly higher in patients with than without rectal bleeding (method 2: 30.8% vs. 22.5%, respectively (p = 0.03); method 3: 26.9% vs. 18.1%, respectively (p = 0.006)). Mean rectal dose was significant predictor of rectal bleeding only in method 3 (48.8 Gy in patients with bleeding vs. 44.4 Gy in patients without bleeding; p = 0.02). Different techniques of rectal contouring significantly influence the calculation of radiation doses to the rectum and the prediction of rectal toxicity. Rectal volume receiving higher doses (≥ 70 Gy) and mean rectal doses may significantly predict rectal bleeding for techniques contouring larger rectal volumes, as was in method 3

  5. A comparison of liver protection among 3-D conformal radiotherapy, intensity-modulated radiotherapy and RapidArc for hepatocellular carcinoma

    International Nuclear Information System (INIS)

    The analysis was designed to compare dosimetric parameters among 3-D conformal radiotherapy (3DCRT), intensity-modulated radiotherapy (IMRT) and RapidArc (RA) to identify which can achieve the lowest risk of radiation-induced liver disease (RILD) for hepatocellular carcinoma (HCC). Twenty patients with HCC were enrolled in this study. Dosimetric values for 3DCRT, IMRT, and RA were calculated for total dose of 50 Gy/25f. The percentage of the normal liver volume receiving >40, >30, >20, >10, and >5 Gy (V40, V30, V20, V10 and V5) were evaluated to determine liver toxicity. V5, V10, V20, V30 and Dmean of liver were compared as predicting parameters for RILD. Other parameters included the conformal index (CI), homogeneity index (HI), and hot spot (V110%) for the planned target volume (PTV) as well as the monitor units (MUs) for plan efficiency, the mean dose (Dmean) for the organs at risk (OARs) and the maximal dose at 1% volume (D1%) for the spinal cord. The Dmean of IMRT was higher than 3DCRT (p = 0.045). For V5, there was a significant difference: RA > IMRT >3DCRT (p <0.05). 3DCRT had a lower V10 and higher V20, V30 values for liver than RA (p <0.05). RA and IMRT achieved significantly better CI and lower V110% values than 3DCRT (p <0.05). RA had better HI, lower MUs and shorter delivery time than 3DCRT or IMRT (p <0.05). For right lobe tumors, RapidArc may have the lowest risk of RILD with the lowest V20 and V30 compared with 3DCRT or IMRT. For diameters of tumors >8 cm in our study, the value of Dmean for 3DCRT was lower than IMRT or RapidArc. This may indicate that 3DCRT is more suitable for larger tumors

  6. The impact of pore structure and surface roughness on capillary trapping for 2-D and 3-D porous media: Comparison with percolation theory

    Science.gov (United States)

    Geistlinger, Helmut; Ataei-Dadavi, Iman; Mohammadian, Sadjad; Vogel, Hans-Jörg

    2015-11-01

    We study the impact of pore structure and surface roughness on capillary trapping of nonwetting gas phase during imbibition with water for capillary numbers between 10-7 and 5 × 10-5, within glass beads, natural sands, glass beads monolayers, and 2-D micromodels. The materials exhibit different roughness of the pore-solid interface. We found that glass beads and natural sands, which exhibit nearly the same grain size distribution, pore size distribution, and connectivity, showed a significant difference of the trapped gas phase of about 15%. This difference can be explained by the microstructure of the pore-solid interface. Based on the visualization of the trapping dynamics within glass beads monolayers and 2-D micromodels, we could show that bypass trapping controls the trapping process in glass beads monolayers, while snap-off trapping controls the trapping process in 2-D micromodels. We conclude that these different trapping processes are the reason for the different trapping efficiency, when comparing glass beads packs with natural sand packs. Moreover, for small capillary numbers of 10-6, we found that the cluster size distribution of trapped gas clusters of all 2-D and 3-D porous media can be described by a universal power law behavior predicted from percolation theory. This cannot be expected a priori for 2-D porous media, because bicontinuity of the two bulk phases is violated. Obviously, bicontinuity holds for the thin-film water phase and the bulk gas phase. The snap-off trapping process leads to ordinary bond percolation in front of the advancing bulk water phase and is the reason for the observed universal power law behavior in 2-D micromodels with rough surfaces.

  7. Volumetric intensity-modulated Arc (RapidArc therapy for primary hepatocellular carcinoma: comparison with intensity-modulated radiotherapy and 3-D conformal radiotherapy

    Directory of Open Access Journals (Sweden)

    Chen Chia-Wen

    2011-06-01

    Full Text Available Abstract Background To compare the RapidArc plan for primary hepatocellular carcinoma (HCC with 3-D conformal radiotherapy (3DCRT and intensity-modulated radiotherapy (IMRT plans using dosimetric analysis. Methods Nine patients with unresectable HCC were enrolled in this study. Dosimetric values for RapidArc, IMRT, and 3DCRT were calculated for total doses of 45~50.4 Gy using 1.8 Gy/day. The parameters included the conformal index (CI, homogeneity index (HI, and hot spot (V107% for the planned target volume (PTV as well as the monitor units (MUs for plan efficiency, the mean dose (Dmean for the organs at risk (OAR and the maximal dose at 1% volume (D1% for the spinal cord. The percentage of the normal liver volume receiving ≥ 40, > 30, > 20, and > 10 Gy (V40 Gy, V30 Gy, V20 Gy, and V10 Gy and the normal tissue complication probability (NTCP were also evaluated to determine liver toxicity. Results All three methods achieved comparable homogeneity for the PTV. RapidArc achieved significantly better CI and V107% values than IMRT or 3DCRT (p p mean of the normal liver than did 3DCRT or RapidArc (p = 0.001. 3DCRT had higher V40 Gy and V30 Gy values for the normal liver than did RapidArc or IMRT. Although the V10 Gy to the normal liver was higher with RapidArc (75.8 ± 13.1% than with 3DCRT or IMRT (60.5 ± 10.2% and 57.2 ± 10.0%, respectively; p p = 0.02. Conclusions RapidArc provided favorable tumor coverage compared with IMRT or 3DCRT, but RapidArc is not superior to IMRT in terms of liver protection. Further studies are needed to establish treatment outcome differences between the three approaches.

  8. A comparison of 1D analytical model and 3D finite element analysis with experiments for a rosen-type piezoelectric transformer.

    Science.gov (United States)

    Boukazouha, F; Poulin-Vittrant, G; Tran-Huu-Hue, L P; Bavencoffe, M; Boubenider, F; Rguiti, M; Lethiecq, M

    2015-07-01

    This article is dedicated to the study of Piezoelectric Transformers (PTs), which offer promising solutions to the increasing need for integrated power electronics modules within autonomous systems. The advantages offered by such transformers include: immunity to electromagnetic disturbances; ease of miniaturisation for example, using conventional micro fabrication processes; and enhanced performance in terms of voltage gain and power efficiency. Central to the adequate description of such transformers is the need for complex analytical modeling tools, especially if one is attempting to include combined contributions due to (i) mechanical phenomena owing to the different propagation modes which differ at the primary and secondary sides of the PT; and (ii) electrical phenomena such as the voltage gain and power efficiency, which depend on the electrical load. The present work demonstrates an original one-dimensional (1D) analytical model, dedicated to a Rosen-type PT and simulation results are successively compared against that of a three-dimensional (3D) Finite Element Analysis (COMSOL Multiphysics software) and experimental results. The Rosen-type PT studied here is based on a single layer soft PZT (P191) with corresponding dimensions 18 mm × 3 mm × 1.5 mm, which operated at the second harmonic of 176 kHz. Detailed simulational and experimental results show that the presented 1D model predicts experimental measurements to within less than 10% error of the voltage gain at the second and third resonance frequency modes. Adjustment of the analytical model parameters is found to decrease errors relative to experimental voltage gain to within 1%, whilst a 2.5% error on the output admittance magnitude at the second resonance mode were obtained. Relying on the unique assumption of one-dimensionality, the present analytical model appears as a useful tool for Rosen-type PT design and behavior understanding.

  9. ASSESSING 3D PHOTOGRAMMETRY TECHNIQUES IN CRANIOMETRICS

    Directory of Open Access Journals (Sweden)

    M. C. Moshobane

    2016-06-01

    Full Text Available Morphometrics (the measurement of morphological features has been revolutionized by the creation of new techniques to study how organismal shape co-varies with several factors such as ecophenotypy. Ecophenotypy refers to the divergence of phenotypes due to developmental changes induced by local environmental conditions, producing distinct ecophenotypes. None of the techniques hitherto utilized could explicitly address organismal shape in a complete biological form, i.e. three-dimensionally. This study investigates the use of the commercial software, Photomodeler Scanner® (PMSc® three-dimensional (3D modelling software to produce accurate and high-resolution 3D models. Henceforth, the modelling of Subantarctic fur seal (Arctocephalus tropicalis and Antarctic fur seal (Arctocephalus gazella skulls which could allow for 3D measurements. Using this method, sixteen accurate 3D skull models were produced and five metrics were determined. The 3D linear measurements were compared to measurements taken manually with a digital caliper. In addition, repetitive measurements were recorded by varying researchers to determine repeatability. To allow for comparison straight line measurements were taken with the software, assuming that close accord with all manually measured features would illustrate the model’s accurate replication of reality. Measurements were not significantly different demonstrating that realistic 3D skull models can be successfully produced to provide a consistent basis for craniometrics, with the additional benefit of allowing non-linear measurements if required.

  10. Assessing 3d Photogrammetry Techniques in Craniometrics

    Science.gov (United States)

    Moshobane, M. C.; de Bruyn, P. J. N.; Bester, M. N.

    2016-06-01

    Morphometrics (the measurement of morphological features) has been revolutionized by the creation of new techniques to study how organismal shape co-varies with several factors such as ecophenotypy. Ecophenotypy refers to the divergence of phenotypes due to developmental changes induced by local environmental conditions, producing distinct ecophenotypes. None of the techniques hitherto utilized could explicitly address organismal shape in a complete biological form, i.e. three-dimensionally. This study investigates the use of the commercial software, Photomodeler Scanner® (PMSc®) three-dimensional (3D) modelling software to produce accurate and high-resolution 3D models. Henceforth, the modelling of Subantarctic fur seal (Arctocephalus tropicalis) and Antarctic fur seal (Arctocephalus gazella) skulls which could allow for 3D measurements. Using this method, sixteen accurate 3D skull models were produced and five metrics were determined. The 3D linear measurements were compared to measurements taken manually with a digital caliper. In addition, repetitive measurements were recorded by varying researchers to determine repeatability. To allow for comparison straight line measurements were taken with the software, assuming that close accord with all manually measured features would illustrate the model's accurate replication of reality. Measurements were not significantly different demonstrating that realistic 3D skull models can be successfully produced to provide a consistent basis for craniometrics, with the additional benefit of allowing non-linear measurements if required.

  11. GPR17: Molecular modeling and dynamics studies of the 3-D structure and purinergic ligand binding features in comparison with P2Y receptors

    Directory of Open Access Journals (Sweden)

    Ranghino Graziella

    2008-06-01

    Full Text Available Abstract Background GPR17 is a G-protein-coupled receptor located at intermediate phylogenetic position between two distinct receptor families: the P2Y and CysLT receptors for extracellular nucleotides and cysteinyl-LTs, respectively. We previously showed that GPR17 can indeed respond to both classes of endogenous ligands and to synthetic compounds active at the above receptor families, thus representing the first fully characterized non-peptide "hybrid" GPCR. In a rat brain focal ischemia model, the selective in vivo knock down of GPR17 by anti-sense technology or P2Y/CysLT antagonists reduced progression of ischemic damage, thus highlighting GPR17 as a novel therapeutic target for stroke. Elucidation of the structure of GPR17 and of ligand binding mechanisms are the necessary steps to obtain selective and potent drugs for this new potential target. On this basis, a 3-D molecular model of GPR17 embedded in a solvated phospholipid bilayer and refined by molecular dynamics simulations has been the first aim of this study. To explore the binding mode of the "purinergic" component of the receptor, the endogenous agonist UDP and two P2Y receptor antagonists demonstrated to be active on GPR17 (MRS2179 and cangrelor were then modeled on the receptor. Results Molecular dynamics simulations suggest that GPR17 nucleotide binding pocket is similar to that described for the other P2Y receptors, although only one of the three basic residues that have been typically involved in ligand recognition is conserved (Arg255. The binding pocket is enclosed between the helical bundle and covered at the top by EL2. Driving interactions are H-bonds and salt bridges between the 6.55 and 6.52 residues and the phosphate moieties of the ligands. An "accessory" binding site in a region formed by the EL2, EL3 and the Nt was also found. Conclusion Nucleotide binding to GPR17 occurs on the same receptor regions identified for already known P2Y receptors. Agonist

  12. Anatomical references for tibial sagittal alignment in total knee arthroplasty: A comparison of three anatomical axes based on 3D reconstructed CT images

    Institute of Scientific and Technical Information of China (English)

    SHAO Jun-jie; Thomas Parker Vail; WANG Qiao-jie; SHEN Hao; CHEN Yun-su; WANG Qi; JIANG Yao

    2013-01-01

    Background This study was designed to analyze three tibial axis reference lines including the anterior tibial cortex (ATC) line,the fibular line (FL),and the anatomical axis of tibia (AAT) line,to determine which line most closely parallels the mechanical axis (MA) of the tibia in the sagittal plane.The clinical relevance of the study is that through finding a reliable landmark on the leg,a surgeon may minimize posterior tibial slope measurement errors thereby and improving the technique for assuring proper alignment of total knee arthroplasty.Methods The material for this study included CT scans of the tibia from 85 consecutive patients and 168 knees (78 without osteoarthritis (OA) and 90 knees with OA).Measurements of the angles between the tibial mechanical axis and each of three reference lines in the sagittal plane were carried out using 3D imaging software.Results Mean angles of 168 knees were as follows:aMT (3.96±0.85)°,aMF (0.70±0.58)°,and aMA (1.40±0.66)°,(aMT:an angle between MA and ATC,aMF:an angle between MA and FL,aMA:an angle between MA and AAT.All abovementioned angles were measured in the sagittal plane of tibia) and the aMF was significantly smaller than the others (P <0.0001).The mean value of the medial tibial slope angle vs.the MA was (9.19±3.97)°,and this was significantly larger than the mean lateral slope angle of (6.62±4.23)° (P <0.0001).The difference between aMF without OA and with OA was not statistically significant (P=0.5015) and the association between the aMT and aMA was strong (r=0.82,P <0.01).Conclusions FL was more closely parallel to the MA of tibia,and more showed less variation between OA and nonOA controls than ATC and AAT lines.Furthermore,the amount of posterior slope in medial plateau was greater than that in lateral plateau.The findings of this analysis suggest that when using the anterior tibial cortex line as is commonly done with extramedullary tibial resection guides,the tibial resection should be sloped

  13. Comparison of two kinds of 3D-printed osteotomy guide plate in 3D model test-operation for total knee arthroplasty%两种3D打印截骨导板在全膝关节置换模型预手术的应用探讨

    Institute of Scientific and Technical Information of China (English)

    张进; 田晓滨; 王少白; 孙立; 杨先腾; 胡如印; 田家亮; 韩伟; 刘腾

    2016-01-01

    Objective To compare 2 kinds of 3D-printed osteotomy guide plate in the 3D model test-operation for the total knee arthropiasty (TKA).Methods Enrolled in this study were 15 patients who underwent TKA from 1st to 30th in June 2015.They were 6 males and 9 females,aged from 53 to 86 years (average,67.8 years).Seven left knees and 8 right ones were involved.They took calibrated weight-beating full-length lower-limb X-ray films and thin-slice CT scans of the knee.The lower limb models were constructed using the statistical shape model (SSM) and 2D/3D registration technology.In the simulated digital operation,the angle and position of osteotomy were determined.According to the osteotomy plan,2 kinds of guide plate were designed,groove guide plate (GG group) and screw positioning guide plate (SPG group).The 2 kinds of guide plate and the 3D knee models were 3D-printed using polylactie acid.Then the groove guide plate and the screw positioning guide plate were used and compared in the model test-operations.Results The osteotomy time was 36.5 ± 6.2 minutes in GG group and 27.8± 4,3 minutes in SPG group;the rate of breakage was 26.7% (8/30) in GG group and 0 in SPG group;the thickness deviation of the bone cut was 3.4 ± 2.5 mm in GG group and 1.6 ± 1.7 mm in SPG group.All the comparisons above showed significant between-group differences (P < 0.05).There was no significant difference in the 3D-printing time between the 2 groups (307 ± 28 minutes versus 302 ± 25 minutes) (P > 0.05).Conclusions In the 3D model test-operation for TKA,compared with groove guide plate,application of screw positioning guide plate may lead to less osteotomy time,less thickness deviation of the bone cut from the plan,smoother osteotomy surface and lower breakage rate,but similar 3D-printing time.%目的 比较两种3D打印截骨导板在全膝关节置换(TKA)模型预手术中的应用效果.方法 选取2015年6月行TKA的15例患者行带标定器的下肢全长负重X线正、侧

  14. 3D Participatory Sensing with Low-Cost Mobile Devices for Crop Height Assessment--A Comparison with Terrestrial Laser Scanning Data.

    Science.gov (United States)

    Marx, Sabrina; Hämmerle, Martin; Klonner, Carolin; Höfle, Bernhard

    2016-01-01

    The integration of local agricultural knowledge deepens the understanding of complex phenomena such as the association between climate variability, crop yields and undernutrition. Participatory Sensing (PS) is a concept which enables laymen to easily gather geodata with standard low-cost mobile devices, offering new and efficient opportunities for agricultural monitoring. This study presents a methodological approach for crop height assessment based on PS. In-field crop height variations of a maize field in Heidelberg, Germany, are gathered with smartphones and handheld GPS devices by 19 participants. The comparison of crop height values measured by the participants to reference data based on terrestrial laser scanning (TLS) results in R2 = 0.63 for the handheld GPS devices and R2 = 0.24 for the smartphone-based approach. RMSE for the comparison between crop height models (CHM) derived from PS and TLS data is 10.45 cm (GPS devices) and 14.69 cm (smartphones). Furthermore, the results indicate that incorporating participants' cognitive abilities in the data collection process potentially improves the quality data captured with the PS approach. The proposed PS methods serve as a fundament to collect agricultural parameters on field-level by incorporating local people. Combined with other methods such as remote sensing, PS opens new perspectives to support agricultural development. PMID:27073917

  15. Advanced Data Visualization in Astrophysics: the X3D Pathway

    CERN Document Server

    Vogt, F P A; Verdes-Montenegro, L; Borthakur, S

    2015-01-01

    Most modern astrophysical datasets are multi-dimensional; a characteristic that can nowadays generally be conserved and exploited scientifically during the data reduction/simulation and analysis cascades. Yet, the same multi-dimensional datasets are systematically cropped, sliced and/or projected to printable two-dimensional (2-D) diagrams at the publication stage. In this article, we introduce the concept of the "X3D pathway" as a mean of simplifying and easing the access to data visualization and publication via three-dimensional (3-D) diagrams. The X3D pathway exploits the facts that 1) the X3D 3-D file format lies at the center of a product tree that includes interactive HTML documents, 3-D printing, and high-end animations, and 2) all high-impact-factor & peer-reviewed journals in Astrophysics are now published (some exclusively) online. We argue that the X3D standard is an ideal vector for sharing multi-dimensional datasets, as it provides direct access to a range of different data visualization tec...

  16. A New Global 0.5° Gridded Dataset (1901–2006) of a Multiscalar Drought Index: Comparison with Current Drought Index Datasets Based on the Palmer Drought Severity Index

    OpenAIRE

    S.M. Vicente-Serrano; S. Beguería; J. I. López-Moreno; Angulo, M.; El Kenawy, A

    2010-01-01

    A monthly global dataset of a multiscalar drought index is presented and compared in terms of spatial and temporal variability with the existing continental and global drought datasets based on the Palmer drought severity index (PDSI). The presented dataset is based on the standardized precipitation evapotranspiration index (SPEI). The index was obtained using the CRU TS3.0 dataset at a spatial resolution of 0.5°. The advantages of the new dataset are that; i) it improves the spatia...

  17. 3D-skannaukseen perehtyminen

    OpenAIRE

    Santaluoto, Olli

    2012-01-01

    Tässä insinöörityössä tarkastellaan erilaisia 3D-skannaustekniikoita ja menetelmiä. Työssä myös kerrotaan esimerkkien avulla eri 3D-skannaustekniikoiden käyttökohteista. 3D-skannaus on Suomessa vielä melko harvinaista, siksi eri tekniikat ja käyttömahdollisuudet ovat monille tuntemattomia. 3D-skanneri on laite, jolla tutkitaan reaalimaailman esineitä tai ympäristöä keräämällä dataa kohteen muodoista. 3D-skannerit ovat hyvin paljon vastaavia tavallisen kameran kanssa. Kuten kameroilla, 3D...

  18. The X'tal cube PET detector with a monolithic crystal processed by the 3D sub-surface laser engraving technique: Performance comparison with glued crystal elements

    Energy Technology Data Exchange (ETDEWEB)

    Yoshida, Eiji, E-mail: rush@nirs.go.jp [Molecular Imaging Center, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Hirano, Yoshiyuki; Tashima, Hideaki; Inadama, Naoko; Nishikido, Fumihiko [Molecular Imaging Center, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Moriya, Takahiro; Omura, Tomohide; Watanabe, Mitsuo [Hamamatsu Photonics K.K., 5000 Hirakuchi, Hamakita-ku, Hamamatsu, Shizuoka 434-8601 (Japan); Murayama, Hideo; Yamaya, Taiga [Molecular Imaging Center, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan)

    2013-09-21

    The X'tal cube is a depth-of-interaction (DOI)-PET detector which is aimed at obtaining isotropic resolution by effective readout of scintillation photons from six sides of the crystal block. The X'tal cube is composed of a 3D crystal block with isotropic segments. Each face of the 3D crystal block is covered with a 4×4 array of multi-pixel photon counters (MPPCs). Previously, in order to fabricate the 3D crystal block efficiently and precisely, we applied a sub-surface laser engraving technique to a monolithic crystal block instead of gluing segmented small crystals. A dense arrangement of multiple micro-cracks carved by the laser beam works efficiently as a scattering wall for the scintillation photons. The X'tal cube with the laser-processed block showed excellent performance with respect to crystal identification and energy resolution. In this work, for characteristics comparison between the laser-processed block and the conventional segmented array block, we made the laser-processed block and two types of segmented array blocks, one with air gaps and the other with glued segmented small crystals. All crystal blocks had 3D grids of 2 mm pitch. The 4×4 MPPC arrays were optically coupled to each surface of the crystal block. When performance was evaluated using a uniform irradiation of 511 keV, we found that the X'tal cubes with the laser-processed block could easily achieve 2 mm{sup 3} uniform crystal identification. Also, the average energy resolution of each 3D grid was 11.1±0.7%. On the other hand, the glued segmented array block had a pinched distribution and crystals could not be separated clearly. The segmented array block with air gaps had satisfactory crystal identification performance; however, the laser-processed block had higher crystal identification performance. Also, the energy resolution of the laser-processed block was better than for the segmented array blocks. In summary, we found the laser-processed X'tal cube had

  19. 3D Printing Functional Nanocomposites

    OpenAIRE

    Leong, Yew Juan

    2016-01-01

    3D printing presents the ability of rapid prototyping and rapid manufacturing. Techniques such as stereolithography (SLA) and fused deposition molding (FDM) have been developed and utilized since the inception of 3D printing. In such techniques, polymers represent the most commonly used material for 3D printing due to material properties such as thermo plasticity as well as its ability to be polymerized from monomers. Polymer nanocomposites are polymers with nanomaterials composited into the ...

  20. 3D Elevation Program—Virtual USA in 3D

    Science.gov (United States)

    Lukas, Vicki; Stoker, J.M.

    2016-01-01

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  1. 3D IBFV : Hardware-Accelerated 3D Flow Visualization

    NARCIS (Netherlands)

    Telea, Alexandru; Wijk, Jarke J. van

    2003-01-01

    We present a hardware-accelerated method for visualizing 3D flow fields. The method is based on insertion, advection, and decay of dye. To this aim, we extend the texture-based IBFV technique for 2D flow visualization in two main directions. First, we decompose the 3D flow visualization problem in a

  2. Interactive 3D multimedia content

    CERN Document Server

    Cellary, Wojciech

    2012-01-01

    The book describes recent research results in the areas of modelling, creation, management and presentation of interactive 3D multimedia content. The book describes the current state of the art in the field and identifies the most important research and design issues. Consecutive chapters address these issues. These are: database modelling of 3D content, security in 3D environments, describing interactivity of content, searching content, visualization of search results, modelling mixed reality content, and efficient creation of interactive 3D content. Each chapter is illustrated with example a

  3. 3D Bayesian contextual classifiers

    DEFF Research Database (Denmark)

    Larsen, Rasmus

    2000-01-01

    We extend a series of multivariate Bayesian 2-D contextual classifiers to 3-D by specifying a simultaneous Gaussian distribution for the feature vectors as well as a prior distribution of the class variables of a pixel and its 6 nearest 3-D neighbours.......We extend a series of multivariate Bayesian 2-D contextual classifiers to 3-D by specifying a simultaneous Gaussian distribution for the feature vectors as well as a prior distribution of the class variables of a pixel and its 6 nearest 3-D neighbours....

  4. 3-D printers for libraries

    CERN Document Server

    Griffey, Jason

    2014-01-01

    As the maker movement continues to grow and 3-D printers become more affordable, an expanding group of hobbyists is keen to explore this new technology. In the time-honored tradition of introducing new technologies, many libraries are considering purchasing a 3-D printer. Jason Griffey, an early enthusiast of 3-D printing, has researched the marketplace and seen several systems first hand at the Consumer Electronics Show. In this report he introduces readers to the 3-D printing marketplace, covering such topics asHow fused deposition modeling (FDM) printing workBasic terminology such as build

  5. 3D for Graphic Designers

    CERN Document Server

    Connell, Ellery

    2011-01-01

    Helping graphic designers expand their 2D skills into the 3D space The trend in graphic design is towards 3D, with the demand for motion graphics, animation, photorealism, and interactivity rapidly increasing. And with the meteoric rise of iPads, smartphones, and other interactive devices, the design landscape is changing faster than ever.2D digital artists who need a quick and efficient way to join this brave new world will want 3D for Graphic Designers. Readers get hands-on basic training in working in the 3D space, including product design, industrial design and visualization, modeling, ani

  6. Using 3D in Visualization

    DEFF Research Database (Denmark)

    Wood, Jo; Kirschenbauer, Sabine; Döllner, Jürgen;

    2005-01-01

    to display 3D imagery. The extra cartographic degree of freedom offered by using 3D is explored and offered as a motivation for employing 3D in visualization. The use of VR and the construction of virtual environments exploit navigational and behavioral realism, but become most usefil when combined...... with abstracted representations embedded in a 3D space. The interactions between development of geovisualization, the technology used to implement it and the theory surrounding cartographic representation are explored. The dominance of computing technologies, driven particularly by the gaming industry...

  7. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions

    Science.gov (United States)

    Rahrig, Ryan R.; Leontis, Neocles B.; Zirbel, Craig L.

    2010-01-01

    Motivation: Comparing 3D structures of homologous RNA molecules yields information about sequence and structural variability. To compare large RNA 3D structures, accurate automatic comparison tools are needed. In this article, we introduce a new algorithm and web server to align large homologous RNA structures nucleotide by nucleotide using local superpositions that accommodate the flexibility of RNA molecules. Local alignments are merged to form a global alignment by employing a maximum clique algorithm on a specially defined graph that we call the ‘local alignment’ graph. Results: The algorithm is implemented in a program suite and web server called ‘R3D Align’. The R3D Align alignment of homologous 3D structures of 5S, 16S and 23S rRNA was compared to a high-quality hand alignment. A full comparison of the 16S alignment with the other state-of-the-art methods is also provided. The R3D Align program suite includes new diagnostic tools for the structural evaluation of RNA alignments. The R3D Align alignments were compared to those produced by other programs and were found to be the most accurate, in comparison with a high quality hand-crafted alignment and in conjunction with a series of other diagnostics presented. The number of aligned base pairs as well as measures of geometric similarity are used to evaluate the accuracy of the alignments. Availability: R3D Align is freely available through a web server http://rna.bgsu.edu/R3DAlign. The MATLAB source code of the program suite is also freely available for download at that location. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: r-rahrig@onu.edu PMID:20929913

  8. Comparison of Four Precipitation Forcing Datasets in Land Information System Simulations over the Continental U.S.

    Science.gov (United States)

    Case, Jonathan L.; Kumar, Sujay V.; Kuliogwski, Robert J.; Langston, Carrie

    2013-01-01

    This paper and poster presented a description of the current real-time SPoRT-LIS run over the southeastern CONUS to provide high-resolution, land surface initialization grids for local numerical model forecasts at NWS forecast offices. The LIS hourly output also offers a supplemental dataset to aid in situational awareness for convective initiation forecasts, assessing flood potential, and monitoring drought at fine scales. It is a goal of SPoRT and several NWS forecast offices to expand the LIS to an entire CONUS domain, so that LIS output can be utilized by NWS Western Region offices, among others. To make this expansion cleanly so as to provide high-quality land surface output, SPoRT tested new precipitation datasets in LIS as an alternative forcing dataset to the current radar+gauge Stage IV product. Similar to the Stage IV product, the NMQ product showed comparable patterns of precipitation and soil moisture distribution, but suffered from radar gaps in the intermountain West, and incorrectly set values to zero instead of missing in the data-void regions of Mexico and Canada. The other dataset tested was the next-generation GOES-R QPE algorithm, which experienced a high bias in both coverage and intensity of accumulated precipitation relative to the control (NLDAS2), Stage IV, and NMQ simulations. The resulting root zone soil moisture was substantially higher in most areas.

  9. Multi-view 3D scene reconstruction using ant colony optimization techniques

    International Nuclear Information System (INIS)

    This paper presents a new method performing high-quality 3D object reconstruction of complex shapes derived from multiple, calibrated photographs of the same scene. The novelty of this research is found in two basic elements, namely: (i) a novel voxel dissimilarity measure, which accommodates the elimination of the lighting variations of the models and (ii) the use of an ant colony approach for further refinement of the final 3D models. The proposed reconstruction procedure employs a volumetric method based on a novel projection test for the production of a visual hull. While the presented algorithm shares certain aspects with the space carving algorithm, it is, nevertheless, first enhanced with the lightness compensating image comparison method, and then refined using ant colony optimization. The algorithm is fast, computationally simple and results in accurate representations of the input scenes. In addition, compared to previous publications, the particular nature of the proposed algorithm allows accurate 3D volumetric measurements under demanding lighting environmental conditions, due to the fact that it can cope with uneven light scenes, resulting from the characteristics of the voxel dissimilarity measure applied. Besides, the intelligent behavior of the ant colony framework provides the opportunity to formulate the process as a combinatorial optimization problem, which can then be solved by means of a colony of cooperating artificial ants, resulting in very promising results. The method is validated with several real datasets, along with qualitative comparisons with other state-of-the-art 3D reconstruction techniques, following the Middlebury benchmark. (paper)

  10. Hydroxypropyl-β-CD vs. its α-homologue for a 3D modified polyrotaxane network formation and properties: the relationship between modified CD and polymer revealed through comparison.

    Science.gov (United States)

    Li, Zhao; Zheng, Zhen; Su, Shan; Yu, Lin; Wang, Xinling

    2016-09-14

    The threading mechanism of the hydroxypropyl-cyclodextrin (Hy-CD)/tetrahedron-like poly(ethylene glycol) (tetra-PEG) based host-guest complex and the relationship between Hy-CD and poly(ethylene oxide) (PEO) in the three-dimensional modified polyrotaxane (PR) formed by the complex were revealed through the comparison between Hy-β-CD/tetra-PEG and Hy-α-CD/tetra-PEG based systems from the macroscopic material view to the microscopic molecular view. The complexation between Hy-CD and tetra-PEG in water experiences a threading-dethreading-rethreading process which is controlled by the intermolecular interaction intensity or molecular hindrance depending on the feed ratio of Hy-CD to tetra-PEG. In the 3D modified PR, the methyl group of the Hy part on one Hy-CD can insert into the cavity of the adjacent Hy-CD and interacts with both the interior surface of the cavity and the PEO segment within the cavity if the cavity of Hy-CD is large enough. The threaded Hy-CD in the PR straightens the chain of PEO and suppresses the segment motion of the PEO. With the decrease of the cavity size of Hy-CD, the degree of suppression on the segment motion of PEO increases. Hy-CD threaded on the PEO chain can also deform when the 3D modified PR is compressed, and the degree of deformation increases with the increase of the cavity size of Hy-CD. These results of the modified CD/PEG based complex system set it apart from the unmodified CD/PEG based one, and reveal the structure-property relationship of this new type of Hy-CD/tetra-PEG based 3D modified PR material.

  11. 3D quantification of dynamic fluid-fluid interfaces in porous media with fast x-ray microtomography: A comparison with quasi-equilibrium methods

    Science.gov (United States)

    Meisenheimer, D.; Brueck, C. L.; Wildenschild, D.

    2015-12-01

    X-ray microtomography imaging of fluid-fluid interfaces in three-dimensional porous media allows for the testing of thermodynamically derived predictions that seek a unique relationship between capillary pressure, fluid saturation, and specific interfacial area (Pc-Sw-Anw). Previous experimental studies sought to test this functional dependence under quasi-equilibrium conditions (assumed static on the imaging time-scale); however, applying predictive models developed under static conditions for dynamic scenarios can lead to substantial flaws in predicted outcomes. Theory and models developed using dynamic data can be verified using fast x-ray microtomography which allows for the unprecedented measurement of developing interfacial areas, curvatures, and trapping behaviors of fluid phases in three-dimensional systems. We will present results of drainage and imbibition experiments of air and water within a mixture of glass beads. The experiments were performed under both quasi-equilibrium and dynamic conditions at the Advanced Photon Source (APS) at Argonne National Laboratory. Fast x-ray microtomography was achieved by utilizing the high brilliance of the x-ray beam at the APS under pink-beam conditions where the white beam is modified with a 4 mm Al absorber and a 0.8 mrad Pt-coated mirror to eliminate low and high-energy photons, respectively. We present a comparison of the results from the quasi-equilibrium and dynamic experiments in an effort to determine if the Pc-Sw-Anw relationship is comparable under either experimental condition and to add to the discussion on whether the Pc-Sw-Anw relationship is unique as hypothesized by existing theory.

  12. Comparison of quality on digital X-ray devices with 3D-capability for ENT-clinical objectives in imaging of temporal bone and paranasal sinuses; Qualitaetsvergleich digitaler 3D-faehiger Roentgenanlagen bei HNO-Fragestellungen am Schlaefenbein und den Nasennebenhoehlen

    Energy Technology Data Exchange (ETDEWEB)

    Knoergen, M.; Brandt, S.; Koesling, S. [Halle-Wittenberg Univ., Halle (Germany). Universitaetsklinik und Poliklinik fuer Diagnostische Radiologie

    2012-12-15

    Purpose: Comparison of dosage and spatial resolution of digital X-Ray devices with 3D-capability in head and neck imaging. Materials and Methods: Three on-site X-Ray devices, a general purpose multi-slice CT (CT), a dedicated cone-beam CT (CBCT) and the CT-mode of a device for digital angiography (DSA) of the same generation were compared using paranasal sinus (PNS) and temporal bone imaging protocols. The radiation exposure was measured with a puncture measuring chamber on a CTDI head phantom as well as with chip-strate-dosimeters on an Alderson head phantom in the regions of the eyes and thyroid gland. By using the Alderson head phantom, the specific dosage of the X-Ray device with regard to different protocols was read out. For the assessment of the high-contrast resolution of the devices, images of a self-made phantom were qualitatively analysed by six observers. Results: The three devices showed marked variations in the dosage and spatial resolution depending on the protocol and/or modus. In both parameters, CBCT was superior to CT and DSA using standard protocols, with the difference being less obvious for the investigation with PNS. Conclusion: For high-contrast investigations CBCT CT is a remarkable option in head and neck radiology. (orig.)

  13. Design and implementation of a rotational radiotherapy technique for breast cancer treatment and their comparison with 3-D-Crt irradiation technique; Diseno e implementacion de una tecnica de radioterapia rotacional para tratamiento de cancer de mama y su comparacion contra la tecnica 3D-CRT de irradiacion

    Energy Technology Data Exchange (ETDEWEB)

    Gutierrez M, J. G.; Lopez V, A.; Rivera M, T. [IPN, Centro de Investigacion en Ciencia Aplicada y Tecnologia Avanzada, Av. Legaria 694, Col. Irrigacion, 11500 Mexico D. F. (Mexico); Velazquez T, J. J.; Adame G, C. S. [Centro Medico Nacional Siglo XXI, Hospital de Oncologia, Departamento de Fisica Medica, Av. Cuauhtemoc No. 330, Col. Doctores, 06720 Mexico D. F. (Mexico); Rubio N, O.; Chagoya G, A.; Hernandez G, J. C., E-mail: jggm25@yahoo.com.mx [Centro Medico Nacional Siglo XXI, Hospital de Oncologia, Departamento de Radioterapia, Av. Cuauhtemoc No. 330, Col. Doctores, 06720 Mexico D. F. (Mexico)

    2015-10-15

    Breast cancer is one of oncological diseases worldwide, as well in Mexico, which causes even more deaths than cervical cancer; this condition is the second death cause in women aged 30-54 years and threatens all socio-economic groups. The treatment is highly dependent on the stage which is detected and based on protocols that include a combination of surgery, chemotherapy and radiotherapy. This paper studies the main irradiation technique for patients with mastectomy, breast full cycle (irradiation of the chest well and supraclavicular nodes) in their mode Three Dimensional - Conformal Radiation Therapy (3-D-Crt), and compared with the Volumetric Modulated Arc Therapy (VMAT) technique proposed in this paper. In both techniques the prescription was 50 Gy divided into 25 fractions. The techniques were applied in three female patients (being an initial study) with disease of the left side, the target volume and organs at risk were delineated by the medical treating radiation oncologist, the planning system used was Eclipse version 10; for quantitative comparison of both plans indexes of homogeneity were used, con formality, the target volume coverage and normal tissue, sub factors and overdosing, the conformation number and coverage quality. They were evaluated and compared the media, maximum and minimum dose of the organs at risk, based on the fact that the coverage of the target volume, dose gradient and dose at risk organs are acceptable (prescription dose greater that 90% coverage, gradient less that 20% and organs at risk in accordance with the Quantec limitations for both versions). (Author)

  14. 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context

    Institute of Scientific and Technical Information of China (English)

    Qi Wang; Qun Liang; Xiuqing Zhang

    2009-01-01

    Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner, a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The program is freely available(under an LGPL licence)at http://sourceforge.net/projects/dgenometuner.

  15. Improvement of 3D Scanner

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The disadvantage remaining in 3D scanning system and its reasons are discussed. A new host-and-slave structure with high speed image acquisition and processing system is proposed to quicken the image processing and improve the performance of 3D scanning system.

  16. 3D Printing for Bricks

    OpenAIRE

    ECT Team, Purdue

    2015-01-01

    Building Bytes, by Brian Peters, is a project that uses desktop 3D printers to print bricks for architecture. Instead of using an expensive custom-made printer, it uses a normal standard 3D printer which is available for everyone and makes it more accessible and also easier for fabrication.

  17. 3D printing in dentistry.

    Science.gov (United States)

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery. PMID:26657435

  18. 3D printing in dentistry.

    Science.gov (United States)

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.

  19. PLOT3D user's manual

    Science.gov (United States)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  20. Accurate 3D point cloud comparison and volumetric change analysis of Terrestrial Laser Scan data in a hard rock coastal cliff environment

    Science.gov (United States)

    Earlie, C. S.; Masselink, G.; Russell, P.; Shail, R.; Kingston, K.

    2013-12-01

    Our understanding of the evolution of hard rock coastlines is limited due to the episodic nature and ';slow' rate at which changes occur. High-resolution surveying techniques, such as Terrestrial Laser Scanning (TLS), have just begun to be adopted as a method of obtaining detailed point cloud data to monitor topographical changes over short periods of time (weeks to months). However, the difficulties involved in comparing consecutive point cloud data sets in a complex three-dimensional plane, such as occlusion due to surface roughness and positioning of data capture point as a result of a consistently changing environment (a beach profile), mean that comparing data sets can lead to errors in the region of 10 - 20 cm. Meshing techniques are often used for point cloud data analysis for simple surfaces, but in surfaces such as rocky cliff faces, this technique has been found to be ineffective. Recession rates of hard rock coastlines in the UK are typically determined using aerial photography or airborne LiDAR data, yet the detail of the important changes occurring to the cliff face and toe are missed using such techniques. In this study we apply an algorithm (M3C2 - Multiscale Model to Model Cloud Comparison), initially developed for analysing fluvial morphological change, that directly compares point to point cloud data using surface normals that are consistent with surface roughness and measure the change that occurs along the normal direction (Lague et al., 2013). The surfaces changes are analysed using a set of user defined scales based on surface roughness and registration error. Once the correct parameters are defined, the volumetric cliff face changes are calculated by integrating the mean distance between the point clouds. The analysis has been undertaken at two hard rock sites identified for their active erosion located on the UK's south west peninsular at Porthleven in south west Cornwall and Godrevy in north Cornwall. Alongside TLS point cloud data, in

  1. Probabilistic sparse matching for robust 3D/3D fusion in minimally invasive surgery.

    Science.gov (United States)

    Neumann, Dominik; Grbic, Sasa; John, Matthias; Navab, Nassir; Hornegger, Joachim; Ionasec, Razvan

    2015-01-01

    Classical surgery is being overtaken by minimally invasive and transcatheter procedures. As there is no direct view or access to the affected anatomy, advanced imaging techniques such as 3D C-arm computed tomography (CT) and C-arm fluoroscopy are routinely used in clinical practice for intraoperative guidance. However, due to constraints regarding acquisition time and device configuration, intraoperative modalities have limited soft tissue image quality and reliable assessment of the cardiac anatomy typically requires contrast agent, which is harmful to the patient and requires complex acquisition protocols. We propose a probabilistic sparse matching approach to fuse high-quality preoperative CT images and nongated, noncontrast intraoperative C-arm CT images by utilizing robust machine learning and numerical optimization techniques. Thus, high-quality patient-specific models can be extracted from the preoperative CT and mapped to the intraoperative imaging environment to guide minimally invasive procedures. Extensive quantitative experiments on 95 clinical datasets demonstrate that our model-based fusion approach has an average execution time of 1.56 s, while the accuracy of 5.48 mm between the anchor anatomy in both images lies within expert user confidence intervals. In direct comparison with image-to-image registration based on an open-source state-of-the-art medical imaging library and a recently proposed quasi-global, knowledge-driven multi-modal fusion approach for thoracic-abdominal images, our model-based method exhibits superior performance in terms of registration accuracy and robustness with respect to both target anatomy and anchor anatomy alignment errors. PMID:25095250

  2. Nanomaterial datasets to advance tomography in scanning transmission electron microscopy

    CERN Document Server

    Levin, Barnaby D A; Chen, Chien-Chun; Scott, M C; Xu, Rui; Theis, Wolfgang; Jiang, Yi; Yang, Yongsoo; Ophus, Colin; Zhang, Haitao; Ha, Don-Hyung; Wang, Deli; Yu, Yingchao; Abruna, Hector D; Robinson, Richard D; Ercius, Peter; Kourkoutis, Lena F; Miao, Jianwei; Muller, David A; Hovden, Robert

    2016-01-01

    Electron tomography in materials science has flourished with the demand to characterize nanoscale materials in three dimensions (3D). Access to experimental data is vital for developing and validating reconstruction methods that improve resolution and reduce radiation dose requirements. This work presents five high-quality scanning transmission electron microscope (STEM) tomography datasets in order to address the critical need for open access data in this field. The datasets represent the current limits of experimental technique, are of high quality, and contain materials with structural complexity. Included are tomographic series of a hyperbranched Co2P nanocrystal, platinum nanoparticles on a carbon nanofibre imaged over the complete 180{\\deg} tilt range, a platinum nanoparticle and a tungsten needle both imaged at atomic resolution by equal slope tomography, and a through-focal tilt series of PtCu nanoparticles. A volumetric reconstruction from every dataset is provided for comparison and development of p...

  3. Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain.

    Science.gov (United States)

    Enlow, Matthew A; Ju, Tao; Kakadiaris, Ioannis A; Carson, James P

    2011-01-01

    As imaging, computing, and data storage technologies improve, there is an increasing opportunity for multiscale analysis of three-dimensional datasets (3-D). Such analysis enables, for example, microscale elements of multiple macroscale specimens to be compared throughout the entire macroscale specimen. Spatial comparisons require bringing datasets into co-alignment. One approach for co-alignment involves elastic deformations of data in addition to rigid alignments. The elastic deformations distort space, and if not accounted for, can distort the information at the microscale. The algorithms developed in this work address this issue by allowing multiple data points to be encoded into a single image pixel, appropriately tracking each data point to ensure lossless data mapping during elastic spatial deformation. This approach was developed and implemented for both 2-D and 3D registration of images. Lossless reconstruction and registration was applied to semi-quantitative cellular gene expression data in the mouse brain, enabling comparison of multiple spatially registered 3-D datasets without any augmentation of the cellular data. Standard reconstruction and registration without the lossless approach resulted in errors in cellular quantities of ∼ 8%.

  4. 3D-Barolo: a new 3D algorithm to derive rotation curves of galaxies

    CERN Document Server

    Di Teodoro, Enrico

    2015-01-01

    We present 3D-Barolo, a new code that derives rotation curves of galaxies from emission-line observations. This software fits 3D tilted-ring models to spectroscopic data-cubes and can be used with a variety of observations: from HI and molecular lines to optical/IR recombination lines. We describe the structure of the main algorithm and show that it performs much better than the standard 2D approach on velocity fields. A number of successful applications, from high to very low spatial resolution data are presented and discussed. 3D-Barolo can recover the true rotation curve and estimate the intrinsic velocity dispersion even in barely resolved galaxies (about 2 resolution elements) provided that the signal to noise of the data is larger that 2-3. It can also be run automatically thanks to its source-detection and first-estimate modules, which make it suitable for the analysis of large 3D datasets. These features make 3D-Barolo a uniquely useful tool to derive reliable kinematics for both local and high-redshi...

  5. Toward Improved Solar Irradiance Forecasts: Comparison of Downwelling Surface Shortwave Radiation in Arizona Derived from Satellite with the Gridded Datasets

    Science.gov (United States)

    Kim, Chang Ki; Holmgren, William F.; Stovern, Michael; Betterton, Eric A.

    2016-08-01

    The downwelling surface shortwave radiation derived from geostationary satellite imagery was compared with the available datasets for the Southwestern United States. The averaged root mean square errors for our instantaneous estimates ranged from 95.0 to 122.7 W m-2, which is lower than those derived from the MODerate resolution Imaging Spectroradiometer (MODIS). The Modern Era Retrospective-analysis for Research and Applications (MERRA) products were used to compare the hourly mean solar insolation. The three hourly mean downwelling surface shortwave radiation was evaluated by comparing the North American Regional Reanalysis (NARR) and the Clouds and the Earth's Radiant Energy System (CERES) products. Our estimates show the better performance than MERRA, NARR and CERES datasets because of coarse resolution that limits determining the solar dimming due to small clouds.

  6. Toward Improved Solar Irradiance Forecasts: Comparison of Downwelling Surface Shortwave Radiation in Arizona Derived from Satellite with the Gridded Datasets

    Science.gov (United States)

    Kim, Chang Ki; Holmgren, William F.; Stovern, Michael; Betterton, Eric A.

    2016-05-01

    The downwelling surface shortwave radiation derived from geostationary satellite imagery was compared with the available datasets for the Southwestern United States. The averaged root mean square errors for our instantaneous estimates ranged from 95.0 to 122.7 W m-2, which is lower than those derived from the MODerate resolution Imaging Spectroradiometer (MODIS). The Modern Era Retrospective-analysis for Research and Applications (MERRA) products were used to compare the hourly mean solar insolation. The three hourly mean downwelling surface shortwave radiation was evaluated by comparing the North American Regional Reanalysis (NARR) and the Clouds and the Earth's Radiant Energy System (CERES) products. Our estimates show the better performance than MERRA, NARR and CERES datasets because of coarse resolution that limits determining the solar dimming due to small clouds.

  7. 3-D Video Processing for 3-D TV

    Science.gov (United States)

    Sohn, Kwanghoon; Kim, Hansung; Kim, Yongtae

    One of the most desirable ways of realizing high quality information and telecommunication services has been called "The Sensation of Reality," which can be achieved by visual communication based on 3-D (Three-dimensional) images. These kinds of 3-D imaging systems have revealed potential applications in the fields of education, entertainment, medical surgery, video conferencing, etc. Especially, three-dimensional television (3-D TV) is believed to be the next generation of TV technology. Figure 13.1 shows how TV's display technologies have evolved , and Fig. 13.2 details the evolution of TV broadcasting as forecasted by the ETRI (Electronics and Telecommunications Research Institute). It is clear that 3-D TV broadcasting will be the next development in this field, and realistic broadcasting will soon follow.

  8. ADT-3D Tumor Detection Assistant in 3D

    Directory of Open Access Journals (Sweden)

    Jaime Lazcano Bello

    2008-12-01

    Full Text Available The present document describes ADT-3D (Three-Dimensional Tumor Detector Assistant, a prototype application developed to assist doctors diagnose, detect and locate tumors in the brain by using CT scan. The reader may find on this document an introduction to tumor detection; ADT-3D main goals; development details; description of the product; motivation for its development; result’s study; and areas of applicability.

  9. Unassisted 3D camera calibration

    Science.gov (United States)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  10. Automatic comparison of bullet marks by matching 3-D topography of different bullets%采用三维形貌特征匹配的弹痕自动比对

    Institute of Scientific and Technical Information of China (English)

    李一芒; 何昕; 魏仲慧

    2013-01-01

    In order to achieve automatic comparison of bullet marks through computer technology, a method to match 3-D topography of different bullets was proposed. First, a proven threshold function of wavelet was used to de-noise the database of the collected 3-D bullet mark information. Second, as in accordance with the vertical direction of the bullet procedure, after de-noising the designed one-dimensional Gaussian filter was used to extract useful information to replace the classical two-dimensional Gaussian filter, and to reduce the loss of information. Finally , after the rotation and translation, we were able to retrieve useful bullet marks near the edge of each bullet, and calculate the cross-correlation measure between two different bullets to identify whether they were fired by the same type of firearm. Experiments show that the proposed method was capable of extracting 3D topography of bullets and realize the automatic comparison of bullet marks through programming. The accuracy rate of the identification was no less than 98% based on the current database.%为了实现计算机对枪弹痕的自动比对,提出了一种采用三维形貌特征匹配的弹痕比对方法.首先通过改进的小波阈值函数对采集到的三维弹痕数据进行滤波以去除噪声干扰;去噪后,设计一维高斯滤波器按照弹痕的垂直方向提取有效信息取代采用经典二维高斯滤波器提取信息,能够减少弹痕信息的损失;最后经旋转、平移截取子弹次棱附近的有效弹痕信息,并计算不同子弹间对应次棱附近的弹痕纹理互相关测度,以判断痕迹所属弹头是否为同一型号枪支所发射.实验表明,所提方法能够提取弹痕的三维形貌特征,并能通过软件编程实现计算机对弹痕的自动比对,在现有数据范围内,其比对正确率不低于98%.

  11. Handbook of 3D integration

    CERN Document Server

    Garrou , Philip; Ramm , Peter

    2014-01-01

    Edited by key figures in 3D integration and written by top authors from high-tech companies and renowned research institutions, this book covers the intricate details of 3D process technology.As such, the main focus is on silicon via formation, bonding and debonding, thinning, via reveal and backside processing, both from a technological and a materials science perspective. The last part of the book is concerned with assessing and enhancing the reliability of the 3D integrated devices, which is a prerequisite for the large-scale implementation of this emerging technology. Invaluable reading fo

  12. Tuotekehitysprojekti: 3D-tulostin

    OpenAIRE

    Pihlajamäki, Janne

    2011-01-01

    Opinnäytetyössä tutustuttiin 3D-tulostamisen teknologiaan. Työssä käytiin läpi 3D-tulostimesta tehty tuotekehitysprojekti. Sen lisäksi esiteltiin yleisellä tasolla tuotekehitysprosessi ja syntyneiden tulosten mahdollisia suojausmenetelmiä. Tavoitteena tässä työssä oli kehittää markkinoilta jo löytyvää kotitulostin-tasoista 3D-laiteteknologiaa lähemmäksi ammattilaistason ratkaisua. Tavoitteeseen pyrittiin keskittymällä parantamaan laitteella saavutettavaa tulostustarkkuutta ja -nopeutt...

  13. 3D on the internet

    OpenAIRE

    Puntar, Matej

    2012-01-01

    The purpose of this thesis is the presentation of already established and new technologies of displaying 3D content in a web browser. The thesis begins with a short presentation of the history of 3D content available on the internet and its development together with advantages and disadvantages of individual technologies. The latter two are described in detail as well is their use and the differences among them. Special emphasis has been given to WebGL, the newest technology of 3D conte...

  14. Color 3D Reverse Engineering

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    This paper presents a principle and a method of col or 3D laser scanning measurement. Based on the fundamental monochrome 3D measureme nt study, color information capture, color texture mapping, coordinate computati on and other techniques are performed to achieve color 3D measurement. The syste m is designed and composed of a line laser light emitter, one color CCD camera, a motor-driven rotary filter, a circuit card and a computer. Two steps in captu ring object's images in the measurement process: Firs...

  15. Exploration of 3D Printing

    OpenAIRE

    Lin, Zeyu

    2014-01-01

    3D printing technology is introduced and defined in this Thesis. Some methods of 3D printing are illustrated and their principles are explained with pictures. Most of the essential parts are presented with pictures and their effects are explained within the whole system. Problems on Up! Plus 3D printer are solved and a DIY product is made with this machine. The processes of making product are recorded and the items which need to be noticed during the process are the highlight in this th...

  16. Materialedreven 3d digital formgivning

    DEFF Research Database (Denmark)

    Hansen, Flemming Tvede

    2010-01-01

    traditionel keramisk produktionssammenhæng. Problemstillingen opmuntrede endvidere til i et samarbejde med en programmør at udvikle et 3d digitalt redskab, der er blevet kaldt et digitalt interaktivt formgivningsredskab (DIF). Eksperimentet undersøger interaktive 3d digitale dynamiske systemer, der...... samarbejder med designere fra fagområder som interaktionsdesign og programmering. Afhandlingen peger på et fremtidigt forskningsfelt indenfor generative og responderende digitale systemer til 3d formgivning, der ligeledes inkluderer følesansen. Endvidere er det relevant at forske i, hvordan de RP teknikker...... formgivning og Rapid Prototyping (RP). RP er en fællesbetegnelse for en række af de teknikker, der muliggør at overføre den digitale form til 3d fysisk form. Forskningsprojektet koncentrerer sig om to overordnede forskningsspørgsmål. Det første handler om, hvordan viden og erfaring indenfor det keramiske...

  17. Porting a 3d-modeler plugin

    OpenAIRE

    Alfredsson, Jonas

    2008-01-01

    This report describes the work and the results found when comparing three different 3d modeler applications. The programs are 3ds Max, Maya and Cinema 4D. The comparisons focus on the possibilities/the amount of freedom these programs interface offer to its plugins. The comparisons are made from the point of view of a tool for creating animations developed as a plugin for these modelers. This plugins demands on the system it is loaded into have been analyzed and from the results of this analy...

  18. A Comparison of Multiple Datasets for Monitoring Thermal Time in Urban Areas over the U.S. Upper Midwest

    Directory of Open Access Journals (Sweden)

    Cole Krehbiel

    2016-03-01

    Full Text Available Traditional studies of urban climate used air temperature observations from local urban/rural weather stations in order to analyze the general pattern of higher temperatures in urban areas compared with corresponding rural regions, also known as the Urban Heat Island (UHI effect. More recently, satellite remote sensing datasets of land surface temperature have been exploited to monitor UHIs. While closely linked, air temperature and land surface temperature (LST observations do not measure the same variables. Here we analyze land surface temperature vs. air temperature-based characterization and seasonality of the UHI and the surface UHI (SUHI from 2003 to 2012 over the Upper Midwest region of the United States using LST from MODIS, and air temperature from the Daymet modeled gridded daily air temperature dataset, and compare both datasets to ground station data from first-order weather stations of the Global Historical Climatology Network (GHCN located in eleven urban areas spanning our study region. We first convert the temperature data to metrics of nocturnal, diurnal, and daily thermal time and their annual accumulations to draw conclusions on nighttime vs. daytime and seasonal dynamics of the UHI. In general, the MODIS LST-derived results are able to capture urban–rural differences in daytime, nighttime, and daily thermal time while the Daymet air temperature-derived results show very little urban–rural differences in thermal time. Compared to the GHCN ground station air temperature-derived observations, MODIS LST-derived results are closer in terms of urban–rural differences in nighttime thermal time, while the results from Daymet are closer to the observations from GHCN during the daytime. We also found differences in the seasonal dynamics of UHIs measured by air temperature observations and SUHIs measured by LST observations.

  19. 3D Face Apperance Model

    DEFF Research Database (Denmark)

    Lading, Brian; Larsen, Rasmus; Astrom, K

    2006-01-01

    We build a 3D face shape model, including inter- and intra-shape variations, derive the analytical Jacobian of its resulting 2D rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations......We build a 3D face shape model, including inter- and intra-shape variations, derive the analytical Jacobian of its resulting 2D rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations...

  20. Main: TATCCAYMOTIFOSRAMY3D [PLACE

    Lifescience Database Archive (English)

    Full Text Available TATCCAYMOTIFOSRAMY3D S000256 01-August-2006 (last modified) kehi TATCCAY motif foun...d in rice (O.s.) RAmy3D alpha-amylase gene promoter; Y=T/C; a GATA motif as its antisense sequence; TATCCAY ...motif and G motif (see S000130) are responsible for sugar repression (Toyofuku et al. 1998); GATA; amylase; sugar; repression; rice (Oryza sativa) TATCCAY ...

  1. Combinatorial 3D Mechanical Metamaterials

    Science.gov (United States)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.

  2. AI 3D Cybug Gaming

    CERN Document Server

    Ahmed, Zeeshan

    2010-01-01

    In this short paper I briefly discuss 3D war Game based on artificial intelligence concepts called AI WAR. Going in to the details, I present the importance of CAICL language and how this language is used in AI WAR. Moreover I also present a designed and implemented 3D War Cybug for AI WAR using CAICL and discus the implemented strategy to defeat its enemies during the game life.

  3. 3D Face Appearance Model

    DEFF Research Database (Denmark)

    Lading, Brian; Larsen, Rasmus; Åström, Kalle

    2006-01-01

    We build a 3d face shape model, including inter- and intra-shape variations, derive the analytical jacobian of its resulting 2d rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations.}......We build a 3d face shape model, including inter- and intra-shape variations, derive the analytical jacobian of its resulting 2d rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations.}...

  4. Validation of 3D multimodality roadmapping in interventional neuroradiology

    Science.gov (United States)

    Ruijters, Daniel; Homan, Robert; Mielekamp, Peter; van de Haar, Peter; Babic, Drazenko

    2011-08-01

    Three-dimensional multimodality roadmapping is entering clinical routine utilization for neuro-vascular treatment. Its purpose is to navigate intra-arterial and intra-venous endovascular devices through complex vascular anatomy by fusing pre-operative computed tomography (CT) or magnetic resonance (MR) with the live fluoroscopy image. The fused image presents the real-time position of the intra-vascular devices together with the patient's 3D vascular morphology and its soft-tissue context. This paper investigates the effectiveness, accuracy, robustness and computation times of the described methods in order to assess their suitability for the intended clinical purpose: accurate interventional navigation. The mutual information-based 3D-3D registration proved to be of sub-voxel accuracy and yielded an average registration error of 0.515 mm and the live machine-based 2D-3D registration delivered an average error of less than 0.2 mm. The capture range of the image-based 3D-3D registration was investigated to characterize its robustness, and yielded an extent of 35 mm and 25° for >80% of the datasets for registration of 3D rotational angiography (3DRA) with CT, and 15 mm and 20° for >80% of the datasets for registration of 3DRA with MR data. The image-based 3D-3D registration could be computed within 8 s, while applying the machine-based 2D-3D registration only took 1.5 µs, which makes them very suitable for interventional use.

  5. 中上段食管癌3D-CRT与IMRT肺损伤剂量学的对比研究%Dosimetric Comparison of Intensity-modulated Radiotherapy Versus 3D Conformal Radiotherapy in Treatment of Cancer of Upper/Mid Esophagus

    Institute of Scientific and Technical Information of China (English)

    张莉; 罗辉

    2011-01-01

    Objective To compared 3D-conformal radiotherapy (3D-CRT)-induced and intensity-modulated radiotherapy (IMRT)-induced pulmonary injury by using 3D treatment planning system,and to explore the optimum treatment strategy for upper/mid esophageal carcinoma.Methods Eight patients with upper/mid esophageal carcinoma were selected in this study. Four different radiotherapy plans were developed for each patient,including 5-field 3D-CRT(CRT5),7-field 3D-CRT(CRT7), 5-field IMRT (IMRT5) and 7-field IMRT (IMRT7). The planning target volume (PTV) received at least 95% of the prescription dose. The mean lung dose (MLD),V5,V10,V20 and V30 were evaluated using dose volume histogram(DVH). All statistics were analyzed using the SPSS version 11.5 software. Results CRT5 plan reduced lung V10 compared with CRT7 (P=0. 006), but V5, V20, V30 and MLD were not different between the two plans(P>0. 008 3). There were no significant differences in lung parameters between IMRT5 and IMRT7.Compared with IMRT plans, V20, V30 and MLD were increased by 3D-CRT, while V5 was decreased by 3D-CRT(P<0. 0083). Conclusion Compared with 3D-CRT, IMRT can reduce the MLD,V20 and V30 to achieve lung sparing in treatment of upper/mid esophageal carcinoma.There were no significant differences in the protection of lung tissues between 5-field and 7-field techniques for both 3D-CRT and IMRT plans.%目的 应用三维适形放疗(3D-CRT)计划比较中上段食管鳞癌3D-CRT和调强放疗(IMRT)的放射性肺损伤情况从而探讨理想的治疗计划模式.方法 8例患者每例分别设计4个放疗计划(CRT-5 、CRT-7、IMRT-5及 IMRT-7),规定PTV至少达到95%处方剂量前提下用DVH评价每个计划的V5 、V10 、V20 、V30及肺 MLD.采用SPSS 11.5软件包进行数据统计与分析.结果 采用3D-CRT技术时,5野的V10优于7野(P=0.006);5野与7野的肺Mean、肺V5、V20、V30(P>0.0083)之间无统计学意义;采用IMRT技术时,5野与7野之间各参数的对

  6. Data Assimilation and Model Evaluation Experiment Datasets.

    Science.gov (United States)

    Lai, Chung-Chieng A.; Qian, Wen; Glenn, Scott M.

    1994-05-01

    The Institute for Naval Oceanography, in cooperation with Naval Research Laboratories and universities, executed the Data Assimilation and Model Evaluation Experiment (DAMÉE) for the Gulf Stream region during fiscal years 1991-1993. Enormous effort has gone into the preparation of several high-quality and consistent datasets for model initialization and verification. This paper describes the preparation process, the temporal and spatial scopes, the contents, the structure, etc., of these datasets.The goal of DAMEE and the need of data for the four phases of experiment are briefly stated. The preparation of DAMEE datasets consisted of a series of processes: 1)collection of observational data; 2) analysis and interpretation; 3) interpolation using the Optimum Thermal Interpolation System package; 4) quality control and re-analysis; and 5) data archiving and software documentation.The data products from these processes included a time series of 3D fields of temperature and salinity, 2D fields of surface dynamic height and mixed-layer depth, analysis of the Gulf Stream and rings system, and bathythermograph profiles. To date, these are the most detailed and high-quality data for mesoscale ocean modeling, data assimilation, and forecasting research. Feedback from ocean modeling groups who tested this data was incorporated into its refinement.Suggestions for DAMEE data usages include 1) ocean modeling and data assimilation studies, 2) diagnosis and theorectical studies, and 3) comparisons with locally detailed observations.

  7. MPML3D: Scripting Agents for the 3D Internet.

    Science.gov (United States)

    Prendinger, Helmut; Ullrich, Sebastian; Nakasone, Arturo; Ishizuka, Mitsuru

    2011-05-01

    The aim of this paper is two-fold. First, it describes a scripting language for specifying communicative behavior and interaction of computer-controlled agents ("bots") in the popular three-dimensional (3D) multiuser online world of "Second Life" and the emerging "OpenSimulator" project. While tools for designing avatars and in-world objects in Second Life exist, technology for nonprogrammer content creators of scenarios involving scripted agents is currently missing. Therefore, we have implemented new client software that controls bots based on the Multimodal Presentation Markup Language 3D (MPML3D), a highly expressive XML-based scripting language for controlling the verbal and nonverbal behavior of interacting animated agents. Second, the paper compares Second Life and OpenSimulator platforms and discusses the merits and limitations of each from the perspective of agent control. Here, we also conducted a small study that compares the network performance of both platforms.

  8. From 3D view to 3D print

    Science.gov (United States)

    Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.

    2014-08-01

    In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers

  9. Contribution of regional 3D meniscus and cartilage morphometry by MRI to joint space width in fixed flexion knee radiography—A between-knee comparison in subjects with unilateral joint space narrowing

    International Nuclear Information System (INIS)

    Background: Radiographic joint space width (JSW) is considered the reference standard for demonstrating structural therapeutic benefits in knee osteoarthritis. Our objective was to determine the proportion by which 3D (regional) meniscus and cartilage measures explain between-knee differences of JSW in the fixed flexion radiographs. Methods: Segmentation of the medial meniscus and tibial and femoral cartilage was performed in double echo steady state (DESS) images. Quantitative measures of meniscus size and position, femorotibial cartilage thickness, and radiographic JSW (minimum, and fixed locations) were compared between both knees of 60 participants of the Osteoarthritis Initiative, with strictly unilateral medial joint space narrowing (JSN). Statistical analyses (between-knee, within-person comparison) were performed using regression analysis. Results: A strong relationship with side-differences in minimum and a central fixed location JSW was observed for percent tibial plateau coverage by the meniscus (r = .59 and .47; p < .01) and central femoral cartilage thickness (r = .69 and .75; p < .01); other meniscus and cartilage measures displayed lower coefficients. The correlation of central femoral cartilage thickness with JSW (but not that of meniscus measures) was greater (r = .78 and .85; p < .01) when excluding knees with non-optimal alignment between the tibia and X-ray beam. Conclusion: 3D measures of meniscus and cartilage provide significant, independent information in explaining side-differences in radiographic JSW in fixed flexion radiographs. Tibial coverage by the meniscus and central femoral cartilage explained two thirds of the variability in minimum and fixed location JSW. JSW provides a better representation of (central) femorotibial cartilage thickness, when optimal positioning of the fixed flexion radiographs is achieved

  10. Comparison of the impact of fire, floods, and large herbivore grazing on the 3-D structure and biomass of Mopane Woodland in Kruger National Park using Terrestrial Laser Scanning

    Science.gov (United States)

    Delgado, A.; Washington-Allen, R. A.; Bruton, R.; Swemmer, A.

    2012-12-01

    We conducted a study to look at the impact of large herbivore grazing exclusion, fire, and flooding on the three dimensional (3-D) structure and biomass of Mopane woodlands using Terrestrial Laser Scanning (TLS). The study was conducted at the 42-ha Letaba exclosure that is located on the northern shore of the Letaba River in the northern part of Kruger National Park (KNP), South Africa. The study entailed comparison of 4 X 30-m diameter paired plots, with 4 treatment (no grazing) plots within the exclosure and 4 control plots outside. Additionally, the northern 4 plots are in upland savanna vegetation on a gravelly loam stream terrace that had been burned in 2010. The southern 4 plots are in riparian woodlands on sandy loam soils that had been flooded in 2007. TLS data was collected at 4-cm spacing with 30-m range at 4 scans per plot. Scans were registered and a 3-D virtual environment was created for each plot from which canopy cover, plant density, and vegetation height were manually measured and biomass was derived. We used discriminant analysis to test the hypothesis that 4 structurally distinct groups would be detected, i.e., burned ungrazed savanna, burned grazed savanna, flooded ungrazed riparian, and a flooded grazed riparian group. We found that point density of grass and trees across plots correlated significantly with plot biomass. We predicted that exclosure biomass would be greater than biomass outside the exclosure and that upland biomass height and density in the canopy, shrub, and herbaceous layers within the exclosure compared to outside. However, though biomass was distinct, structural features were not in the upland pairs.

  11. Contribution of regional 3D meniscus and cartilage morphometry by MRI to joint space width in fixed flexion knee radiography—A between-knee comparison in subjects with unilateral joint space narrowing

    Energy Technology Data Exchange (ETDEWEB)

    Bloecker, K., E-mail: katja.bloecker@pmu.ac.at [Institute of Anatomy and Musculoskeletal Research, Paracelsus Medical University, Strubergasse 21, 5020 Salzburg (Austria); Department of Traumatology and Sports Medicine, Paracelsus Medical University, Müllner Hauptstrasse 48, 5020 Salzburg (Austria); Wirth, W., E-mail: wolfgang.wirth@pmu.ac.at [Institute of Anatomy and Musculoskeletal Research, Paracelsus Medical University, Strubergasse 21, 5020 Salzburg (Austria); Chondrometrics GmbH, Ulrichshöglerstrasse 23, 83404 Ainring (Germany); Hunter, D.J., E-mail: david.hunter@sydney.edu.au [Royal North Shore Hospital and Kolling Institute, University of Sydney, Pacific Highway, St Leonards, Sydney, NSW 2065 (Australia); Duryea, J., E-mail: jduryea@bwh.harvard.edu [Brigham and Women' s Hospital, Harvard Medical School, 75 Francis Street, Boston, MA (United States); Guermazi, A., E-mail: Ali.Guermazi@bmc.org [Boston University School of Medicine, Department of Radiology, 820 Harrison Avenue, FGH Building 3rd Floor, Boston, MA (United States); Boston Imaging Core Lab (BICL), 601 Albany Street, Boston, MA (United States); Kwoh, C.K., E-mail: kwoh@pitt.edu [Division of Rheumatology and Clinical Immunology, University of Arizona, Tucson, AZ (United States); Division of Rheumatology and Clinical Immunology, University of Pittsburgh and VA, Pittsburgh Healthcare System, 3500 Terrace Street, Biomedical Science Tower South 702, Pittsburgh, PA 15261 (United States); Resch, H., E-mail: Herbert.resch@salk.at [Department of Traumatology and Sports Medicine, Paracelsus Medical University, Müllner Hauptstrasse 48, 5020 Salzburg (Austria); Eckstein, F. [Institute of Anatomy and Musculoskeletal Research, Paracelsus Medical University, Strubergasse 21, 5020 Salzburg (Austria); Chondrometrics GmbH, Ulrichshöglerstrasse 23, 83404 Ainring (Germany)

    2013-12-01

    Background: Radiographic joint space width (JSW) is considered the reference standard for demonstrating structural therapeutic benefits in knee osteoarthritis. Our objective was to determine the proportion by which 3D (regional) meniscus and cartilage measures explain between-knee differences of JSW in the fixed flexion radiographs. Methods: Segmentation of the medial meniscus and tibial and femoral cartilage was performed in double echo steady state (DESS) images. Quantitative measures of meniscus size and position, femorotibial cartilage thickness, and radiographic JSW (minimum, and fixed locations) were compared between both knees of 60 participants of the Osteoarthritis Initiative, with strictly unilateral medial joint space narrowing (JSN). Statistical analyses (between-knee, within-person comparison) were performed using regression analysis. Results: A strong relationship with side-differences in minimum and a central fixed location JSW was observed for percent tibial plateau coverage by the meniscus (r = .59 and .47; p < .01) and central femoral cartilage thickness (r = .69 and .75; p < .01); other meniscus and cartilage measures displayed lower coefficients. The correlation of central femoral cartilage thickness with JSW (but not that of meniscus measures) was greater (r = .78 and .85; p < .01) when excluding knees with non-optimal alignment between the tibia and X-ray beam. Conclusion: 3D measures of meniscus and cartilage provide significant, independent information in explaining side-differences in radiographic JSW in fixed flexion radiographs. Tibial coverage by the meniscus and central femoral cartilage explained two thirds of the variability in minimum and fixed location JSW. JSW provides a better representation of (central) femorotibial cartilage thickness, when optimal positioning of the fixed flexion radiographs is achieved.

  12. Needle segmentation using 3D Hough transform in 3D TRUS guided prostate transperineal therapy

    International Nuclear Information System (INIS)

    Purpose: Prostate adenocarcinoma is the most common noncutaneous malignancy in American men with over 200 000 new cases diagnosed each year. Prostate interventional therapy, such as cryotherapy and brachytherapy, is an effective treatment for prostate cancer. Its success relies on the correct needle implant position. This paper proposes a robust and efficient needle segmentation method, which acts as an aid to localize the needle in three-dimensional (3D) transrectal ultrasound (TRUS) guided prostate therapy. Methods: The procedure of locating the needle in a 3D TRUS image is a three-step process. First, the original 3D ultrasound image containing a needle is cropped; the cropped image is then converted to a binary format based on its histogram. Second, a 3D Hough transform based needle segmentation method is applied to the 3D binary image in order to locate the needle axis. The position of the needle endpoint is finally determined by an optimal threshold based analysis of the intensity probability distribution. The overall efficiency is improved through implementing a coarse-fine searching strategy. The proposed method was validated in tissue-mimicking agar phantoms, chicken breast phantoms, and 3D TRUS patient images from prostate brachytherapy and cryotherapy procedures by comparison to the manual segmentation. The robustness of the proposed approach was tested by means of varying parameters such as needle insertion angle, needle insertion length, binarization threshold level, and cropping size. Results: The validation results indicate that the proposed Hough transform based method is accurate and robust, with an achieved endpoint localization accuracy of 0.5 mm for agar phantom images, 0.7 mm for chicken breast phantom images, and 1 mm for in vivo patient cryotherapy and brachytherapy images. The mean execution time of needle segmentation algorithm was 2 s for a 3D TRUS image with size of 264 × 376 × 630 voxels. Conclusions: The proposed needle segmentation

  13. YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters

    Science.gov (United States)

    Schild, Jonas; Seele, Sven; Masuch, Maic

    2012-03-01

    Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.

  14. Comparison of numerical predictions with CO2 pipeline release datasets of relevance to carbon capture and storage applications

    International Nuclear Information System (INIS)

    Predicting the correct multi-phase fluid flow behaviour during the discharge process in the near-field of sonic CO2 jets is of particular importance in assessing the risks associated with transport aspects of carbon capture and storage schemes, given the very different hazard profiles of CO2 in the gaseous and solid states. In this paper, we apply our state-of-the-art mathematical model implemented in an efficient computational method to available data. Compared to previous applications, an improved equation of state is used. We also compare to all the available data, rather than just subsets as previously, and demonstrate both the improved performance of the fluid flow model and the variation between the available datasets. The condensed phase fraction at the vent, puncture or rupture release point is revealed to be of key importance in understanding the near-field dispersion of sonic CO2

  15. Comparison of numerical predictions with CO{sub 2} pipeline release datasets of relevance to carbon capture and storage applications

    Energy Technology Data Exchange (ETDEWEB)

    Wareing, Christopher J. [School of Chemical and Process Engineering, University of Leeds, Leeds, LS2 9JT (United Kingdom); School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT (United Kingdom); Fairweather, Michael; Woolley, Robert M. [School of Chemical and Process Engineering, University of Leeds, Leeds, LS2 9JT (United Kingdom); Falle, S. A. E. G. [School of Mathematics, University of Leeds, Leeds, LS2 9JT (United Kingdom)

    2015-12-31

    Predicting the correct multi-phase fluid flow behaviour during the discharge process in the near-field of sonic CO{sub 2} jets is of particular importance in assessing the risks associated with transport aspects of carbon capture and storage schemes, given the very different hazard profiles of CO{sub 2} in the gaseous and solid states. In this paper, we apply our state-of-the-art mathematical model implemented in an efficient computational method to available data. Compared to previous applications, an improved equation of state is used. We also compare to all the available data, rather than just subsets as previously, and demonstrate both the improved performance of the fluid flow model and the variation between the available datasets. The condensed phase fraction at the vent, puncture or rupture release point is revealed to be of key importance in understanding the near-field dispersion of sonic CO{sub 2}.

  16. Remote 3D Medical Consultation

    Science.gov (United States)

    Welch, Greg; Sonnenwald, Diane H.; Fuchs, Henry; Cairns, Bruce; Mayer-Patel, Ketan; Yang, Ruigang; State, Andrei; Towles, Herman; Ilie, Adrian; Krishnan, Srinivas; Söderholm, Hanna M.

    Two-dimensional (2D) video-based telemedical consultation has been explored widely in the past 15-20 years. Two issues that seem to arise in most relevant case studies are the difficulty associated with obtaining the desired 2D camera views, and poor depth perception. To address these problems we are exploring the use of a small array of cameras to synthesize a spatially continuous range of dynamic three-dimensional (3D) views of a remote environment and events. The 3D views can be sent across wired or wireless networks to remote viewers with fixed displays or mobile devices such as a personal digital assistant (PDA). The viewpoints could be specified manually or automatically via user head or PDA tracking, giving the remote viewer virtual head- or hand-slaved (PDA-based) remote cameras for mono or stereo viewing. We call this idea remote 3D medical consultation (3DMC). In this article we motivate and explain the vision for 3D medical consultation; we describe the relevant computer vision/graphics, display, and networking research; we present a proof-of-concept prototype system; and we present some early experimental results supporting the general hypothesis that 3D remote medical consultation could offer benefits over conventional 2D televideo.

  17. Novel 3D media technologies

    CERN Document Server

    Dagiuklas, Tasos

    2015-01-01

    This book describes recent innovations in 3D media and technologies, with coverage of 3D media capturing, processing, encoding, and adaptation, networking aspects for 3D Media, and quality of user experience (QoE). The contributions are based on the results of the FP7 European Project ROMEO, which focuses on new methods for the compression and delivery of 3D multi-view video and spatial audio, as well as the optimization of networking and compression jointly across the future Internet. The delivery of 3D media to individual users remains a highly challenging problem due to the large amount of data involved, diverse network characteristics and user terminal requirements, as well as the user’s context such as their preferences and location. As the number of visual views increases, current systems will struggle to meet the demanding requirements in terms of delivery of consistent video quality to fixed and mobile users. ROMEO will present hybrid networking solutions that combine the DVB-T2 and DVB-NGH broadcas...

  18. 3D future internet media

    CERN Document Server

    Dagiuklas, Tasos

    2014-01-01

    This book describes recent innovations in 3D media and technologies, with coverage of 3D media capturing, processing, encoding, and adaptation, networking aspects for 3D Media, and quality of user experience (QoE). The main contributions are based on the results of the FP7 European Projects ROMEO, which focus on new methods for the compression and delivery of 3D multi-view video and spatial audio, as well as the optimization of networking and compression jointly across the Future Internet (www.ict-romeo.eu). The delivery of 3D media to individual users remains a highly challenging problem due to the large amount of data involved, diverse network characteristics and user terminal requirements, as well as the user’s context such as their preferences and location. As the number of visual views increases, current systems will struggle to meet the demanding requirements in terms of delivery of constant video quality to both fixed and mobile users. ROMEO will design and develop hybrid-networking solutions that co...

  19. 3D Imager and Method for 3D imaging

    NARCIS (Netherlands)

    Kumar, P.; Staszewski, R.; Charbon, E.

    2013-01-01

    3D imager comprising at least one pixel, each pixel comprising a photodetectorfor detecting photon incidence and a time-to-digital converter system configured for referencing said photon incidence to a reference clock, and further comprising a reference clock generator provided for generating the re

  20. Modification of 3D milling machine to 3D printer

    OpenAIRE

    Halamíček, Lukáš

    2015-01-01

    Tato práce se zabývá přestavbou gravírovací frézky na 3D tiskárnu. V první části se práce zabývá možnými technologiemi 3D tisku a možností jejich využití u přestavby. Dále jsou popsány a vybrány vhodné součásti pro přestavbu. V další části je realizováno řízení ohřevu podložky, trysky a řízení posuvu drátu pomocí softwaru TwinCat od společnosti Beckhoff na průmyslovém počítači. Výsledkem práce by měla být oživená 3D tiskárna. This thesis deals with rebuilding of engraving machine to 3D pri...

  1. Bringing 3D Printing to Geophysical Science Education

    Science.gov (United States)

    Boghosian, A.; Turrin, M.; Porter, D. F.

    2014-12-01

    3D printing technology has been embraced by many technical fields, and is rapidly making its way into peoples' homes and schools. While there is a growing educational and hobbyist community engaged in the STEM focused technical and intellectual challenges associated with 3D printing, there is unrealized potential for the earth science community to use 3D printing to communicate scientific research to the public. Moreover, 3D printing offers scientists the opportunity to connect students and the public with novel visualizations of real data. As opposed to introducing terrestrial measurements through the use of colormaps and gradients, scientists can represent 3D concepts with 3D models, offering a more intuitive education tool. Furthermore, the tactile aspect of models make geophysical concepts accessible to a wide range of learning styles like kinesthetic or tactile, and learners including both visually impaired and color-blind students.We present a workflow whereby scientists, students, and the general public will be able to 3D print their own versions of geophysical datasets, even adding time through layering to include a 4th dimension, for a "4D" print. This will enable scientists with unique and expert insights into the data to easily create the tools they need to communicate their research. It will allow educators to quickly produce teaching aids for their students. Most importantly, it will enable the students themselves to translate the 2D representation of geophysical data into a 3D representation of that same data, reinforcing spatial reasoning.

  2. Markerless 3D Face Tracking

    DEFF Research Database (Denmark)

    Walder, Christian; Breidt, Martin; Bulthoff, Heinrich;

    2009-01-01

    We present a novel algorithm for the markerless tracking of deforming surfaces such as faces. We acquire a sequence of 3D scans along with color images at 40Hz. The data is then represented by implicit surface and color functions, using a novel partition-of-unity type method of efficiently...... combining local regressors using nearest neighbor searches. Both these functions act on the 4D space of 3D plus time, and use temporal information to handle the noise in individual scans. After interactive registration of a template mesh to the first frame, it is then automatically deformed to track...... the scanned surface, using the variation of both shape and color as features in a dynamic energy minimization problem. Our prototype system yields high-quality animated 3D models in correspondence, at a rate of approximately twenty seconds per timestep. Tracking results for faces and other objects...

  3. Crowded Field 3D Spectroscopy

    CERN Document Server

    Becker, T; Roth, M M; Becker, Thomas; Fabrika, Sergei; Roth, Martin M.

    2003-01-01

    The quantitative spectroscopy of stellar objects in complex environments is mainly limited by the ability of separating the object from the background. Standard slit spectroscopy, restricting the field of view to one dimension, is obviously not the proper technique in general. The emerging Integral Field (3D) technique with spatially resolved spectra of a two-dimensional field of view provides a great potential for applying advanced subtraction methods. In this paper an image reconstruction algorithm to separate point sources and a smooth background is applied to 3D data. Several performance tests demonstrate the photometric quality of the method. The algorithm is applied to real 3D observations of a sample Planetary Nebula in M31, whose spectrum is contaminated by the bright and complex galaxy background. The ability of separating sources is also studied in a crowded stellar field in M33.

  4. 3D-grafiikkamoottori mobiililaitteille

    OpenAIRE

    Vahlman, Lauri

    2014-01-01

    Tässä insinöörityössä käydään läpi mobiililaitteille suunnatun yksinkertaisen 3D-grafiikkamoottorin suunnittelu ja toteutus käyttäen OpenGL ES -rajapintaa. Työssä esitellään grafiikkamoottorin toteutuksessa käytettyjä tekniikoita sekä tutustutaan moottorin rakenteeseen ja toteutuksellisiin yksityiskohtiin. Työn alkupuolella tutustutaan myös modernin 3D-grafiikan yleisiin periaatteisiin ja toimintaan sekä käydään läpi 3D-grafiikkaan liittyviä suorituskykyongelmia. Työn loppupuolella esitel...

  5. 3D vector flow imaging

    DEFF Research Database (Denmark)

    Pihl, Michael Johannes

    The main purpose of this PhD project is to develop an ultrasonic method for 3D vector flow imaging. The motivation is to advance the field of velocity estimation in ultrasound, which plays an important role in the clinic. The velocity of blood has components in all three spatial dimensions, yet...... conventional methods can estimate only the axial component. Several approaches for 3D vector velocity estimation have been suggested, but none of these methods have so far produced convincing in vivo results nor have they been adopted by commercial manufacturers. The basis for this project is the Transverse...... on the TO fields are suggested. They can be used to optimize the TO method. In the third part, a TO method for 3D vector velocity estimation is proposed. It employs a 2D phased array transducer and decouples the velocity estimation into three velocity components, which are estimated simultaneously based on 5...

  6. Optical characterization and measurements of autostereoscopic 3D displays

    Science.gov (United States)

    Salmimaa, Marja; Järvenpää, Toni

    2008-04-01

    3D or autostereoscopic display technologies offer attractive solutions for enriching the multimedia experience. However, both characterization and comparison of 3D displays have been challenging when the definitions for the consistent measurement methods have been lacking and displays with similar specifications may appear quite different. Earlier we have investigated how the optical properties of autostereoscopic (3D) displays can be objectively measured and what are the main characteristics defining the perceived image quality. In this paper the discussion is extended to cover the viewing freedom (VF) and the definition for the optimum viewing distance (OVD) is elaborated. VF is the volume inside which the eyes have to be to see an acceptable 3D image. Characteristics limiting the VF space are proposed to be 3D crosstalk, luminance difference and color difference. Since the 3D crosstalk can be presumed to be dominating the quality of the end user experience and in our approach is forming the basis for the calculations of the other optical parameters, the reliability of the 3D crosstalk measurements is investigated. Furthermore the effect on the derived VF definition is evaluated. We have performed comparison 3D crosstalk measurements with different measurement device apertures and the effect of different measurement geometry on the results on actual 3D displays is reported.

  7. Analysis and dynamic 3D visualization of cerebral blood flow combining 3D and 4D MR image sequences

    Science.gov (United States)

    Forkert, Nils Daniel; Säring, Dennis; Fiehler, Jens; Illies, Till; Möller, Dietmar; Handels, Heinz

    2009-02-01

    In this paper we present a method for the dynamic visualization of cerebral blood flow. Spatio-temporal 4D magnetic resonance angiography (MRA) image datasets and 3D MRA datasets with high spatial resolution were acquired for the analysis of arteriovenous malformations (AVMs). One of the main tasks is the combination of the information of the 3D and 4D MRA image sequences. Initially, in the 3D MRA dataset the vessel system is segmented and a 3D surface model is generated. Then, temporal intensity curves are analyzed voxelwise in the 4D MRA image sequences. A curve fitting of the temporal intensity curves to a patient individual reference curve is used to extract the bolus arrival times in the 4D MRA sequences. After non-linear registration of both MRA datasets the extracted hemodynamic information is transferred to the surface model where the time points of inflow can be visualized color coded dynamically over time. The dynamic visualizations computed using the curve fitting method for the estimation of the bolus arrival times were rated superior compared to those computed using conventional approaches for bolus arrival time estimation. In summary the procedure suggested allows a dynamic visualization of the individual hemodynamic situation and better understanding during the visual evaluation of cerebral vascular diseases.

  8. 3D roadmap in neuroangiography: technique and clinical interest

    Energy Technology Data Exchange (ETDEWEB)

    Soederman, Michael; Andersson, T. [Karolinska Hospital, Department of Neuroradiology, Stockholm (Sweden); Babic, D.; Homan, R. [Philips Medical Systems, Best (Netherlands)

    2005-10-01

    We present the first clinical results obtained with a novel technique: the three-dimensional [3D] roadmap. The major difference from the standard 2D digital roadmap technique is that the newly developed 3D roadmap is based on a rotational angiography acquisition technique with the two-dimensional [2D] fluoroscopic image as an overlay. Data required for an accurate superimposition of the previously acquired 3D reconstructed image on the interactively made 2D fluoroscopy image, in real time, are stored in the 3D workstation and constitute the calibration dataset. Both datasets are spatially aligned in real time; thus, the 3D image is accurately superimposed on the 2D fluoroscopic image regardless of any change in C-arm position or magnification. The principal advantage of the described roadmap method is that one contrast injection allows the C-arm to be positioned anywhere in the space and allows alterations in the distance between the x-ray tube and the image intensifier as well as changes in image magnification. In the clinical setting, the 3D roadmap facilitated intravascular neuronavigation with concurrent reduction of procedure time and use of contrast medium. (orig.)

  9. Microfluidic 3D Helix Mixers

    Directory of Open Access Journals (Sweden)

    Georgette B. Salieb-Beugelaar

    2016-10-01

    Full Text Available Polymeric microfluidic systems are well suited for miniaturized devices with complex functionality, and rapid prototyping methods for 3D microfluidic structures are increasingly used. Mixing at the microscale and performing chemical reactions at the microscale are important applications of such systems and we therefore explored feasibility, mixing characteristics and the ability to control a chemical reaction in helical 3D channels produced by the emerging thread template method. Mixing at the microscale is challenging because channel size reduction for improving solute diffusion comes at the price of a reduced Reynolds number that induces a strictly laminar flow regime and abolishes turbulence that would be desired for improved mixing. Microfluidic 3D helix mixers were rapidly prototyped in polydimethylsiloxane (PDMS using low-surface energy polymeric threads, twisted to form 2-channel and 3-channel helices. Structure and flow characteristics were assessed experimentally by microscopy, hydraulic measurements and chromogenic reaction, and were modeled by computational fluid dynamics. We found that helical 3D microfluidic systems produced by thread templating allow rapid prototyping, can be used for mixing and for controlled chemical reaction with two or three reaction partners at the microscale. Compared to the conventional T-shaped microfluidic system used as a control device, enhanced mixing and faster chemical reaction was found to occur due to the combination of diffusive mixing in small channels and flow folding due to the 3D helix shape. Thus, microfluidic 3D helix mixers can be rapidly prototyped using the thread template method and are an attractive and competitive method for fluid mixing and chemical reactions at the microscale.

  10. Ideal 3D asymmetric concentrator

    Energy Technology Data Exchange (ETDEWEB)

    Garcia-Botella, Angel [Departamento Fisica Aplicada a los Recursos Naturales, Universidad Politecnica de Madrid, E.T.S.I. de Montes, Ciudad Universitaria s/n, 28040 Madrid (Spain); Fernandez-Balbuena, Antonio Alvarez; Vazquez, Daniel; Bernabeu, Eusebio [Departamento de Optica, Universidad Complutense de Madrid, Fac. CC. Fisicas, Ciudad Universitaria s/n, 28040 Madrid (Spain)

    2009-01-15

    Nonimaging optics is a field devoted to the design of optical components for applications such as solar concentration or illumination. In this field, many different techniques have been used for producing reflective and refractive optical devices, including reverse engineering techniques. In this paper we apply photometric field theory and elliptic ray bundles method to study 3D asymmetric - without rotational or translational symmetry - concentrators, which can be useful components for nontracking solar applications. We study the one-sheet hyperbolic concentrator and we demonstrate its behaviour as ideal 3D asymmetric concentrator. (author)

  11. Advanced 3-D Ultrasound Imaging

    DEFF Research Database (Denmark)

    Rasmussen, Morten Fischer

    The main purpose of the PhD project was to develop methods that increase the 3-D ultrasound imaging quality available for the medical personnel in the clinic. Acquiring a 3-D volume gives the medical doctor the freedom to investigate the measured anatomy in any slice desirable after the scan has...... beamforming. This is achieved partly because synthetic aperture imaging removes the limitation of a fixed transmit focal depth and instead enables dynamic transmit focusing. Lately, the major ultrasound companies have produced ultrasound scanners using 2-D transducer arrays with enough transducer elements...

  12. 3D PERSPECTIVE OF MAXILLOFACIAL TRAUMA

    Directory of Open Access Journals (Sweden)

    Surekha

    2016-03-01

    Full Text Available AIM Role of 3 Dimensional Computed Tomography in facial fractures. METHODS AND MATERIALS 133 patients with history of head trauma were scanned using multi slice CT for a period of 2 yrs. Data acquisition was performed using - 16 Slice GE Bright Speed Elite CT Scanner. The datasets were transferred to workstation and VR post-processing protocols were applied. RESULTS 122 patients were male and 11 were female. The mean age of patients with fractures was 32.3 years old. Fractures included the mandible, the maxilla, the frontal bone, the zygomatic arch and the nasal bone. CONCLUSION Continuing advances in computer software algorithms and improved precision in the acquisition of radiographic data makes 3D reformatted CT imaging a necessary complement to traditional 2D CT imaging in the management of complex facial trauma. CT is the investigation of choice in the evaluation of patients with maxillofacial trauma.

  13. Comparing historical and modern methods of Sea Surface Temperature measurement - Part 1: Review of methods, field comparisons and dataset adjustments

    Science.gov (United States)

    Matthews, J. B. R.

    2012-09-01

    Sea Surface Temperature (SST) measurements have been obtained from a variety of different platforms, instruments and depths over the post-industrial period. Today most measurements come from ships, moored and drifting buoys and satellites. Shipboard methods include temperature measurement of seawater sampled by bucket and in engine cooling water intakes. Engine intake temperatures are generally thought to average a few tenths of a °C warmer than simultaneous bucket temperatures. Here I review SST measurement methods, studies comparing shipboard methods by field experiment and adjustments applied to SST datasets to account for variable methods. In opposition to contemporary thinking, I find average bucket-intake temperature differences reported from field studies inconclusive. Non-zero average differences often have associated standard deviations that are several times larger than the averages themselves. Further, average differences have been found to vary widely between ships and between cruises on the same ship. The cause of non-zero average differences is typically unclear given the general absence of additional temperature observations to those from buckets and engine intakes. Shipboard measurements appear of variable quality, highly dependent upon the accuracy and precision of the thermometer used and the care of the observer where manually read. Methods are generally poorly documented, with written instructions not necessarily reflecting actual practices of merchant mariners. Measurements cannot be expected to be of high quality where obtained by untrained sailors using thermometers of low accuracy and precision.

  14. Characteristics of Atmospheric Heat Sources over Asia in Summer:Comparison of Results Calculated Using Multiple Reanalysis Datasets

    Institute of Scientific and Technical Information of China (English)

    ZHANG Bo; CHEN Longxun; HE Jinhai; ZHU Congwen; LI Wei

    2009-01-01

    Using 1979-2000 daily NCEP/NCAR (National Centers for Environmental Prediction/National Center for Atmospheric Research) reanalysis data (version 1, hereafter referred to as NCEP1; version 2, hereafter referred to as NCEP2), ECMWF (European Center for Medium-range Weather Forecasts) reanalysis data (ERA), and the Global Asian Monsoon Experiment (GAME) reanalysis data in summer 1998, the vertically integrated heat source (Q1) in summer is calculated, and results obtained using different datasets are com-pared. The distributions of (Q1) calculated by using NCEP1 are in good agreement with rainfall observations over the Arabian Sea/Indian Peninsula, the Bay of Bengal (BOB), and East China. The distributions of (Q1)revealed by using NCEP2 are unrealistic in the southern Indian Peninsula, the BOB, and the South China Sea. Using ERA, the heat sources over the tropical Asia are in accordance with the summer precipitation,however, the distributions of (Q1) in East China are unreasonable. In the tropical region, the distributions of the summer heat source given by NCEP1 and ERA seem to be more accurate than those revealed by NCEP2. The NCEP1 and NCEP2 data are better for calculating heat sources over the subtropical and eastern regions of mainland China.

  15. Is agritourism eco-friendly? A comparison between agritourisms and other farms in Italy using farm accountancy data network dataset.

    Science.gov (United States)

    Mastronardi, Luigi; Giaccio, Vincenzo; Giannelli, Agostino; Scardera, Alfonso

    2015-01-01

    This paper presents the results of research regarding the environmental performances of Italian farms with agritourism compared with farms without agritourism. In Italy, agritourism is considered an agricultural activity and can only be performed by a farmer. Moreover, Italian national legislation forces the farmer to dedicate himself mainly to traditional farming, rather than to tourism activities. For this reason, environmental performances have been highlighted by analyzing only features and production systems of the farms. By utilizing the most frequent indicators used in studies regarding sustainability, the authors show how Italian agritourisms tend to develop more environmentally friendly agricultural methods, which have a positive impact on biodiversity, landscape and natural resources. The empirical analysis is based on the Italian FADN (Farm Accountancy Data Network) dataset. The European FADN was created to represent farms' technical and economic operation in the European Union and on which it drafts the agricultural and rural policies. The dichotomous structure of the dependent variable (presence or absence of agritourism at the farm) has a propensity for an assessment method based on Binary Response Model Regression. PMID:26543725

  16. Is agritourism eco-friendly? A comparison between agritourisms and other farms in Italy using farm accountancy data network dataset.

    Science.gov (United States)

    Mastronardi, Luigi; Giaccio, Vincenzo; Giannelli, Agostino; Scardera, Alfonso

    2015-01-01

    This paper presents the results of research regarding the environmental performances of Italian farms with agritourism compared with farms without agritourism. In Italy, agritourism is considered an agricultural activity and can only be performed by a farmer. Moreover, Italian national legislation forces the farmer to dedicate himself mainly to traditional farming, rather than to tourism activities. For this reason, environmental performances have been highlighted by analyzing only features and production systems of the farms. By utilizing the most frequent indicators used in studies regarding sustainability, the authors show how Italian agritourisms tend to develop more environmentally friendly agricultural methods, which have a positive impact on biodiversity, landscape and natural resources. The empirical analysis is based on the Italian FADN (Farm Accountancy Data Network) dataset. The European FADN was created to represent farms' technical and economic operation in the European Union and on which it drafts the agricultural and rural policies. The dichotomous structure of the dependent variable (presence or absence of agritourism at the farm) has a propensity for an assessment method based on Binary Response Model Regression.

  17. 3D Face Apperance Model

    OpenAIRE

    Lading, Brian; Larsen, Rasmus; Astrom, K

    2006-01-01

    We build a 3D face shape model, including inter- and intra-shape variations, derive the analytical Jacobian of its resulting 2D rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations

  18. 3D Face Appearance Model

    OpenAIRE

    Lading, Brian; Larsen, Rasmus; Åström, Kalle

    2006-01-01

    We build a 3d face shape model, including inter- and intra-shape variations, derive the analytical jacobian of its resulting 2d rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations.}

  19. Making Inexpensive 3-D Models

    Science.gov (United States)

    Manos, Harry

    2016-01-01

    Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…

  20. When Art Meets 3D

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The presentation of the vanguard work,My Dream3D,the innovative production by the China Disabled People’s Performing Art Troupe(CDPPAT),directed by Joy Joosang Park,provided the film’s domestic premiere at Beijing’s Olympic Park onApril7.The show provided an intriguing insight not

  1. 3D terahertz beam profiling

    DEFF Research Database (Denmark)

    Pedersen, Pernille Klarskov; Strikwerda, Andrew; Wang, Tianwu;

    2013-01-01

    We present a characterization of THz beams generated in both a two-color air plasma and in a LiNbO3 crystal. Using a commercial THz camera, we record intensity images as a function of distance through the beam waist, from which we extract 2D beam profiles and visualize our measurements into 3D beam...

  2. 3D Printing: Exploring Capabilities

    Science.gov (United States)

    Samuels, Kyle; Flowers, Jim

    2015-01-01

    As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

  3. Viewing galaxies in 3D

    CERN Document Server

    Krajnović, Davor

    2016-01-01

    Thanks to a technique that reveals galaxies in 3D, astronomers can now show that many galaxies have been wrongly classified. Davor Krajnovi\\'c argues that the classification scheme proposed 85 years ago by Edwin Hubble now needs to be revised.

  4. Face recognition using SIFT features under 3D meshes

    Institute of Scientific and Technical Information of China (English)

    ZHANG Cheng; GU Yu-zhang; HU Ke-li; WANG Ying-guan

    2015-01-01

    Expression, occlusion, and pose variations are three main challenges for 3D face recognition. A novel method is presented to address 3D face recognition using scale-invariant feature transform (SIFT) features on 3D meshes. After preprocessing, shape index extrema on the 3D facial surface are selected as keypoints in the difference scale space and the unstable keypoints are removed after two screening steps. Then, a local coordinate system for each keypoint is established by principal component analysis (PCA). Next, two local geometric features are extracted around each keypoint through the local coordinate system. Additionally, the features are augmented by the symmetrization according to the approximate left-right symmetry in human face. The proposed method is evaluated on the Bosphorus, BU-3DFE, and Gavab databases, respectively. Good results are achieved on these three datasets. As a result, the proposed method proves robust to facial expression variations, partial external occlusions and large pose changes.

  5. Dose comparison between three planing prostate: 3-D conformational radiotherapy, coplanar arc therapy and non-coplanar arc therapy; Comparaison dosimetrique de trois balistiques prostatiques: radiotherapie conformationnelle tridimensionnelle, arctherapie coplanaire et arctherapie non-coplanaire

    Energy Technology Data Exchange (ETDEWEB)

    Voyant, C.; Baadj, A.; Biffi, K.; Leschi, D.; Lantieri, C. [Centre Hospitalier Dept. Castelluccio, Service de Radiotherapie, Ajaccio (France); Voyant, C. [Universite de Corse, Lab. SPE, CNRS-UMR 6134, Corte (France)

    2008-09-15

    Purpose: Comparative study between a classical conformational prostate radiotherapy (3 D.R.T.C.) and two arc therapy techniques, a coplanar (A.T.-C) and the other non-coplanar (A.T.-N.C.). Patients and Methods:The comparison has been made retrospectively on 30 patients with localized prostate cancer (T.2-T.3a, P.S.A. < 20 ng/ml, Gleason < 7). The objective criteria for comparison were the N.T.C.P., E.U.D., and dose volume (on D.V.H.), for the volumes of bladder wall, rectal wall, femoral heads, small bowel, prostate (P) and seminal vesicles (V.S.). The treatment was 46 Gy on P.T.V.1 (V.S. + P + margins), and then an overdose of 30 Gy on P.T.V.1 (P + margins). Results: For prostate volumes exceeding 75 cm{sup 3}, arc therapy leads to a decrease in uniformity in the target volume and an increase in the dose received by the femoral heads, this method does not seem appropriate. For prostate volumes less than 75 cm{sup 3}, in addition to the coverage almost tumor, and radiation toxicity equivalent to the bladder and the small intestine, there is a significant increase in the dose to the femoral heads, while the remaining is still within limits, such as clinically tolerable. The contribution of arc therapy is mainly observed at the level of rectal doses. The dose received by 30% of the rectum is reduced by - 12% for A.T.-C and - 11.7% for A.T-N.C., and E.U.D. rectum - 5.2% and - 4.8%. Conclusion: In this virtual study, the arc therapy seems to generate a true dose reduction in the rectum wall. These results encourage us to continue the investigation for a possible integration in a dynamic clinical routine. (authors)

  6. Priprava 3D modelov za 3D tisk

    OpenAIRE

    Pikovnik, Tomaž

    2015-01-01

    Po mnenju nekaterih strokovnjakov bo aditivna proizvodnja (ali 3D tiskanje) spremenila proizvodnjo industrijo, saj si bo vsak posameznik lahko natisnil svoj objekt po želji. V diplomski nalogi so predstavljene nekatere tehnologije aditivne proizvodnje. V nadaljevanju diplomske naloge je predstavljena izdelava makete hiše v merilu 1:100, vse od modeliranja do tiskanja. Poseben poudarek je posvečen predelavi modela, da je primeren za tiskanje, kjer je razvit pristop za hitrejše i...

  7. Post processing of 3D models for 3D printing

    OpenAIRE

    Pikovnik, Tomaž

    2015-01-01

    According to the opinion of some experts the additive manufacturing or 3D printing will change manufacturing industry, because any individual could print their own model according to his or her wishes. In this graduation thesis some of the additive manufacturing technologies are presented. Furthermore in the production of house scale model in 1:100 is presented, starting from modeling to printing. Special attention is given to postprocessing of the building model elements us...

  8. DYNA3D2000*, Explicit 3-D Hydrodynamic FEM Program

    International Nuclear Information System (INIS)

    1 - Description of program or function: DYNA3D2000 is a nonlinear explicit finite element code for analyzing 3-D structures and solid continuum. The code is vectorized and available on several computer platforms. The element library includes continuum, shell, beam, truss and spring/damper elements to allow maximum flexibility in modeling physical problems. Many materials are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding, single surface contact and automatic contact generation. 2 - Method of solution: Discretization of a continuous model transforms partial differential equations into algebraic equations. A numerical solution is then obtained by solving these algebraic equations through a direct time marching scheme. 3 - Restrictions on the complexity of the problem: Recent software improvements have eliminated most of the user identified limitations with dynamic memory allocation and a very large format description that has pushed potential problem sizes beyond the reach of most users. The dominant restrictions remain in code execution speed and robustness, which the developers constantly strive to improve

  9. Indoor objects and outdoor urban scenes recognition by 3D visual primitives

    DEFF Research Database (Denmark)

    Fu, Junsheng; Kämäräinen, Joni-Kristian; Buch, Anders Glent;

    2014-01-01

    Object detection, recognition and pose estimation in 3D images have gained momentum due to availability of 3D sensors (RGB-D) and increase of large scale 3D data, such as city maps. The most popular approach is to extract and match 3D shape descriptors that encode local scene structure, but omits......, we propose an alternative appearance-driven approach which rst extracts 2D primitives justi ed by Marr's primal sketch, which are \\accumulated" over multiple views and the most stable ones are \\promoted" to 3D visual primitives. The 3D promoted primitives represent both structure and appearance....... For recognition, we propose a fast and eective correspondence matching using random sampling. For quantitative evaluation we construct a semi-synthetic benchmark dataset using a public 3D model dataset of 119 kitchen objects and another benchmark of challenging street-view images from 4 dierent cities...

  10. Navigation in Orthognathic Surgery: 3D Accuracy.

    Science.gov (United States)

    Badiali, Giovanni; Roncari, Andrea; Bianchi, Alberto; Taddei, Fulvia; Marchetti, Claudio; Schileo, Enrico

    2015-10-01

    This article aims to determine the absolute accuracy of maxillary repositioning during orthognathic surgery according to simulation-guided navigation, that is, the combination of navigation and three-dimensional (3D) virtual surgery. We retrospectively studied 15 patients treated for asymmetric dentofacial deformities at the Oral and Maxillofacial Surgery Unit of the S.Orsola-Malpighi University Hospital in Bologna, Italy, from January 2010 to January 2012. Patients were scanned with a cone-beam computed tomography before and after surgery. The virtual surgical simulation was realized with a dedicated software and loaded on a navigation system to improve intraoperative reproducibility of the preoperative planning. We analyzed the outcome following two protocols: (1) planning versus postoperative 3D surface analysis; (2) planning versus postoperative point-based analysis. For 3D surface comparison, the mean Hausdorff distance was measured, and median among cases was 0.99 mm. Median reproducibility orthognathic surgery, if compared with the surgical computer-designed project realized with a dedicated software, particularly for the vertical dimension, which is the most challenging to manage.

  11. Dynamic contrast-enhanced 3D photoacoustic imaging

    Science.gov (United States)

    Wong, Philip; Kosik, Ivan; Carson, Jeffrey J. L.

    2013-03-01

    Photoacoustic imaging (PAI) is a hybrid imaging modality that integrates the strengths from both optical imaging and acoustic imaging while simultaneously overcoming many of their respective weaknesses. In previous work, we reported on a real-time 3D PAI system comprised of a 32-element hemispherical array of transducers. Using the system, we demonstrated the ability to capture photoacoustic data, reconstruct a 3D photoacoustic image, and display select slices of the 3D image every 1.4 s, where each 3D image resulted from a single laser pulse. The present study aimed to exploit the rapid imaging speed of an upgraded 3D PAI system by evaluating its ability to perform dynamic contrast-enhanced imaging. The contrast dynamics can provide rich datasets that contain insight into perfusion, pharmacokinetics and physiology. We captured a series of 3D PA images of a flow phantom before and during injection of piglet and rabbit blood. Principal component analysis was utilized to classify the data according to its spatiotemporal information. The results suggested that this technique can be used to separate a sequence of 3D PA images into a series of images representative of main features according to spatiotemporal flow dynamics.

  12. Converting Static Image Datasets to Spiking Neuromorphic Datasets Using Saccades

    Directory of Open Access Journals (Sweden)

    Garrick eOrchard

    2015-11-01

    Full Text Available Creating datasets for Neuromorphic Vision is a challenging task. A lack of available recordings from Neuromorphic Vision sensors means that data must typically be recorded specifically for dataset creation rather than collecting and labelling existing data. The task is further complicated by a desire to simultaneously provide traditional frame-based recordings to allow for direct comparison with traditional Computer Vision algorithms. Here we propose a method for converting existing Computer Vision static image datasets into Neuromorphic Vision datasets using an actuated pan-tilt camera platform. Moving the sensor rather than the scene or image is a more biologically realistic approach to sensing and eliminates timing artifacts introduced by monitor updates when simulating motion on a computer monitor. We present conversion of two popular image datasets (MNIST and Caltech101 which have played important roles in the development of Computer Vision, and we provide performance metrics on these datasets using spike-based recognition algorithms. This work contributes datasets for future use in the field, as well as results from spike-based algorithms against which future works can compare. Furthermore, by converting datasets already popular in Computer Vision, we enable more direct comparison with frame-based approaches.

  13. Scale Effects of Geographical Soil Datasets on Soil Carbon Estimation in Louisiana, USA: A Comparison of STATSGO and SSURGO

    Institute of Scientific and Technical Information of China (English)

    B. ZHONG; Y. J. XU

    2011-01-01

    Estimation of soil organic carbon (SOC) pools and fluxes bears large uncertainties because SOC stocks vary greatly over geographical space and through time.Although development of the U.S.Soil Survey Geographic Database (SSURGO),currently the most detailed level with a map scale ranging from 1:12 000 to 1:63 360,has involved substantial government funds and coordinated network efforts,very few studies have utilized it for soil carbon assessment at the large landscape scale.The objectives of this study were to 1) compare estimates in soil organic matter among SSURGO,the State Soil Geographic Database (STATSGO),and referenced field measurements at the soil map unit; 2) examine the influence of missing data on SOC estimation by SSURGO and STATSGO; 3) quantify spatial differences in SOC estimation between SSURGO and STATSGO,specifically for the state of Louisiana; and 4) assess scale effects on soil organic carbon density (SOCD) estimates from a soil map unit to a watershed and a river basin scale.SOC was estimated using soil attributes of SSURGO and STATSGO including soil organic matter (SOM) content,soil layer depth,and bulk density.Paired t-test,correlation,and regression analyses were performed to investigate various relations of SOC and SOM among the datasets.There were positive relations of SOC estimates between SSURGO and STATSGO at the soil map unit (R2 = 0.56,n = 86,t = 1.65,P = 0.102; depth:30 cm).However,the SOC estimated by STATSGO were 9%,33% and 36% lower for the upper 30-cm,the upper l-m,and the maximal depth (up to 2.75 m) soils,respectively,than those from SSURGO.The difference tended to increase as the spatial scale changes from the soil map unit to the watershed and river basin scales.Compared with the referenced field measurements,the estimates in SOM by SSURGO showed a closer match than those of STATSGO,indicating that the former was more accurate than the latter in SOC estimation,both in spatial and temporal resolutions.Further applications

  14. New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome

    Directory of Open Access Journals (Sweden)

    Deng Yangyang

    2010-01-01

    Full Text Available Abstract Background Recently, a number of high-resolution genome-wide maps of nucleosome locations in S. cerevisiae have been derived experimentally. However, nucleosome positions are determined in vivo by the combined effects of numerous factors. Consequently, nucleosomes are not simple static units, which may explain the discrepancies in reported nucleosome positions as measured by different experiments. In order to more accurately depict the genome-wide nucleosome distribution, we integrated multiple nucleosomal positioning datasets using a multi-angle analysis strategy. Results To evaluate the contribution of chromatin structure to transcription, we used the vast amount of available nucleosome analyzed data. Analysis of this data allowed for the comprehensive identification of the connections between promoter nucleosome positioning patterns and various transcription-dependent properties. Further, we characterised the function of nucleosome destabilisation in the context of transcription regulation. Our results indicate that genes with similar nucleosome occupancy patterns share general transcription attributes. We identified the local regulatory correlation (LRC regions for two distinct types of nucleosomes and we assessed their regulatory properties. We also estimated the nucleosome reproducibility and measurement accuracy for high-confidence transcripts. We found that by maintaining a distance of ~13 bp between the upstream border of the +1 nucleosome and the transcription start sites (TSSs, the stable +1 nucleosome may form a barrier against the accessibility of the TSS and shape an optimum chromatin conformation for gene regulation. An in-depth analysis of nucleosome positioning in normally growing and heat shock cells suggested that the extent and patterns of nucleosome sliding are associated with gene activation. Conclusions Our results, which combine different types of data, suggest that cross-platform information, including

  15. A Dataset for Visual Navigation with Neuromorphic Methods.

    Science.gov (United States)

    Barranco, Francisco; Fermuller, Cornelia; Aloimonos, Yiannis; Delbruck, Tobi

    2016-01-01

    Standardized benchmarks in Computer Vision have greatly contributed to the advance of approaches to many problems in the field. If we want to enhance the visibility of event-driven vision and increase its impact, we will need benchmarks that allow comparison among different neuromorphic methods as well as comparison to Computer Vision conventional approaches. We present datasets to evaluate the accuracy of frame-free and frame-based approaches for tasks of visual navigation. Similar to conventional Computer Vision datasets, we provide synthetic and real scenes, with the synthetic data created with graphics packages, and the real data recorded using a mobile robotic platform carrying a dynamic and active pixel vision sensor (DAVIS) and an RGB+Depth sensor. For both datasets the cameras move with a rigid motion in a static scene, and the data includes the images, events, optic flow, 3D camera motion, and the depth of the scene, along with calibration procedures. Finally, we also provide simulated event data generated synthetically from well-known frame-based optical flow datasets. PMID:26941595

  16. 3D Printable Graphene Composite.

    Science.gov (United States)

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-07-08

    In human being's history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today's personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite's linear thermal coefficient is below 75 ppm·°C(-1) from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process.

  17. 3-D Relativistic MHD Simulations

    Science.gov (United States)

    Nishikawa, K.-I.; Frank, J.; Koide, S.; Sakai, J.-I.; Christodoulou, D. M.; Sol, H.; Mutel, R. L.

    1998-12-01

    We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W = 4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure.

  18. 3D Printed Robotic Hand

    Science.gov (United States)

    Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.

    2013-01-01

    Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.

  19. Forensic 3D Scene Reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  20. SU-E-J-13: Six Degree of Freedom Image Fusion Accuracy for Cranial Target Localization On the Varian Edge Stereotactic Radiosurgery System: Comparison Between 2D/3D and KV CBCT Image Registration

    Energy Technology Data Exchange (ETDEWEB)

    Xu, H [Wayne State University, Detroit, MI (United States); Song, K; Chetty, I; Kim, J [Henry Ford Health System, Detroit, MI (United States); Wen, N [Henry Ford Health System, West Bloomfield, MI (United States)

    2015-06-15

    Purpose: To determine the 6 degree of freedom systematic deviations between 2D/3D and CBCT image registration with various imaging setups and fusion algorithms on the Varian Edge Linac. Methods: An anthropomorphic head phantom with radio opaque targets embedded was scanned with CT slice thicknesses of 0.8, 1, 2, and 3mm. The 6 DOF systematic errors were assessed by comparing 2D/3D (kV/MV with CT) with 3D/3D (CBCT with CT) image registrations with different offset positions, similarity measures, image filters, and CBCT slice thicknesses (1 and 2 mm). The 2D/3D registration accuracy of 51 fractions for 26 cranial SRS patients was also evaluated by analyzing 2D/3D pre-treatment verification taken after 3D/3D image registrations. Results: The systematic deviations of 2D/3D image registration using kV- kV, MV-kV and MV-MV image pairs were within ±0.3mm and ±0.3° for translations and rotations with 95% confidence interval (CI) for a reference CT with 0.8 mm slice thickness. No significant difference (P>0.05) on target localization was observed between 0.8mm, 1mm, and 2mm CT slice thicknesses with CBCT slice thicknesses of 1mm and 2mm. With 3mm CT slice thickness, both 2D/3D and 3D/3D registrations performed less accurately in longitudinal direction than thinner CT slice thickness (0.60±0.12mm and 0.63±0.07mm off, respectively). Using content filter and using similarity measure of pattern intensity instead of mutual information, improved the 2D/3D registration accuracy significantly (P=0.02 and P=0.01, respectively). For the patient study, means and standard deviations of residual errors were 0.09±0.32mm, −0.22±0.51mm and −0.07±0.32mm in VRT, LNG and LAT directions, respectively, and 0.12°±0.46°, −0.12°±0.39° and 0.06°±0.28° in RTN, PITCH, and ROLL directions, respectively. 95% CI of translational and rotational deviations were comparable to those in phantom study. Conclusion: 2D/3D image registration provided on the Varian Edge radiosurgery, 6 DOF

  1. SU-E-J-13: Six Degree of Freedom Image Fusion Accuracy for Cranial Target Localization On the Varian Edge Stereotactic Radiosurgery System: Comparison Between 2D/3D and KV CBCT Image Registration

    International Nuclear Information System (INIS)

    Purpose: To determine the 6 degree of freedom systematic deviations between 2D/3D and CBCT image registration with various imaging setups and fusion algorithms on the Varian Edge Linac. Methods: An anthropomorphic head phantom with radio opaque targets embedded was scanned with CT slice thicknesses of 0.8, 1, 2, and 3mm. The 6 DOF systematic errors were assessed by comparing 2D/3D (kV/MV with CT) with 3D/3D (CBCT with CT) image registrations with different offset positions, similarity measures, image filters, and CBCT slice thicknesses (1 and 2 mm). The 2D/3D registration accuracy of 51 fractions for 26 cranial SRS patients was also evaluated by analyzing 2D/3D pre-treatment verification taken after 3D/3D image registrations. Results: The systematic deviations of 2D/3D image registration using kV- kV, MV-kV and MV-MV image pairs were within ±0.3mm and ±0.3° for translations and rotations with 95% confidence interval (CI) for a reference CT with 0.8 mm slice thickness. No significant difference (P>0.05) on target localization was observed between 0.8mm, 1mm, and 2mm CT slice thicknesses with CBCT slice thicknesses of 1mm and 2mm. With 3mm CT slice thickness, both 2D/3D and 3D/3D registrations performed less accurately in longitudinal direction than thinner CT slice thickness (0.60±0.12mm and 0.63±0.07mm off, respectively). Using content filter and using similarity measure of pattern intensity instead of mutual information, improved the 2D/3D registration accuracy significantly (P=0.02 and P=0.01, respectively). For the patient study, means and standard deviations of residual errors were 0.09±0.32mm, −0.22±0.51mm and −0.07±0.32mm in VRT, LNG and LAT directions, respectively, and 0.12°±0.46°, −0.12°±0.39° and 0.06°±0.28° in RTN, PITCH, and ROLL directions, respectively. 95% CI of translational and rotational deviations were comparable to those in phantom study. Conclusion: 2D/3D image registration provided on the Varian Edge radiosurgery, 6 DOF

  2. GOTHIC CHURCHES IN PARIS ST GERVAIS ET ST PROTAIS IMAGE MATCHING 3D RECONSTRUCTION TO UNDERSTAND THE VAULTS SYSTEM GEOMETRY

    Directory of Open Access Journals (Sweden)

    M. Capone

    2015-02-01

    benefits and the troubles. From a methodological point of view this is our workflow: - theoretical study about geometrical configuration of rib vault systems; - 3D model based on theoretical hypothesis about geometric definition of the vaults' form; - 3D model based on image matching 3D reconstruction methods; - comparison between 3D theoretical model and 3D model based on image matching;

  3. Comparison of two single-breath-held 3-D acquisitions with multi-breath-held 2-D cine steady-state free precession MRI acquisition in children with single ventricles

    Energy Technology Data Exchange (ETDEWEB)

    Atweh, Lamya A.; Dodd, Nicholas A.; Krishnamurthy, Ramkumar; Chu, Zili D. [Texas Children' s Hospital, EB Singleton Department of Pediatric Radiology, Cardiovascular Imaging, Houston, TX (United States); Pednekar, Amol [Philips Healthcare, Houston, TX (United States); Krishnamurthy, Rajesh [Texas Children' s Hospital, EB Singleton Department of Pediatric Radiology, Cardiovascular Imaging, Houston, TX (United States); Baylor College of Medicine, Department of Radiology, Houston, TX (United States); Baylor College of Medicine, Department of Pediatrics, Houston, TX (United States)

    2016-05-15

    Breath-held two-dimensional balanced steady-state free precession cine acquisition (2-D breath-held SSFP), accelerated with parallel imaging, is the method of choice for evaluating ventricular function due to its superior blood-to-myocardial contrast, edge definition and high intrinsic signal-to-noise ratio throughout the cardiac cycle. The purpose of this study is to qualitatively and quantitatively compare the two different single-breath-hold 3-D cine SSFP acquisitions using 1) multidirectional sensitivity encoding (SENSE) acceleration factors (3-D multiple SENSE SSFP), and 2) k-t broad-use linear acceleration speed-up technique (3-D k-t SSFP) with the conventional 2-D breath-held SSFP in non-sedated asymptomatic volunteers and children with single ventricle congenital heart disease. Our prospective study was performed on 30 non-sedated subjects (9 healthy volunteers and 21 functional single ventricle patients), ages 12.5 +/- 2.8 years. Two-dimensional breath-held SSFP with SENSE acceleration factor of 2, eight-fold accelerated 3-D k-t SSFP, and 3-D multiple SENSE SSFP with total parallel imaging factor of 4 were performed to evaluate ventricular volumes and mass in the short-axis orientation. Image quality scores (blood myocardial contrast, edge definition and interslice alignment) and volumetric analysis (end systolic volume, end diastolic volume and ejection fraction) were performed on the data sets by experienced users. Paired t-test was performed to compare each of the 3-D k-t SSFP and 3-D multiple SENSE SSFP clinical scores against 2-D breath-held SSFP. Bland-Altman analysis was performed on left ventricle (LV) and single ventricle volumetry. Interobserver and intraobserver variability in volumetric measurements were determined using intraclass coefficients. The clinical scores were highest for the 2-D breath-held SSFP images. Between the two 3-D sequences, 3-D multiple SENSE SSFP performed better than 3-D k-t SSFP. Bland-Altman analysis for volumes

  4. Reconstruction of 3-D digital cores using a hybrid method

    Institute of Scientific and Technical Information of China (English)

    Liu Xuefeng; Sun Jianmeng; Wang Haitao

    2009-01-01

    A 3-D digital core describes the pore space microstructure of rocks. An X-ray micro CT scan is the most accurate and direct but costly method to obtain a 3-D digital core. In this study, we propose a hybrid method which combines sedimentation simulation and simulated annealing (SA) method to generate 3-D digital cores based on 2-D images of rocks. The method starts with the sedimentation simulation to build a 3-D digital core, which is the initial configuration for the SA method. We update the initial digital core using the SA method to match the auto-correlation function of the 2-D rock image and eventually build the final 3-D digital core. Compared with the typical SA method, the hybrid method has significantly reduced the computation time. Local porosity theory is applied to quantitatively compare the reconstructed 3-D digital cores with the X-ray micro CT 3-D images. The results indicate that the 3-D digital cores reconstructed by the hybrid method have homogeneity and geometric connectivity similar to those of the X-ray micro CT image. The formation factors and permeabilities of the reconstructed 3-D digital cores are estimated using the finite element method (FEM) and lattice Boltzmann method (LBM), respectively. The simulated results are in good agreement with the experimental measurements. Comparison of the simulation results suggests that the digital cores reconstructed by the hybrid method more closely reflect the true transport properties than the typical SA method alone.

  5. [Real time 3D echocardiography

    Science.gov (United States)

    Bauer, F.; Shiota, T.; Thomas, J. D.

    2001-01-01

    Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.

  6. 3D/3D registration of coronary CTA and biplane XA reconstructions for improved image guidance

    Energy Technology Data Exchange (ETDEWEB)

    Dibildox, Gerardo, E-mail: g.dibildox@erasmusmc.nl; Baka, Nora; Walsum, Theo van [Biomedical Imaging Group Rotterdam, Departments of Radiology and Medical Informatics, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands); Punt, Mark; Aben, Jean-Paul [Pie Medical Imaging, 6227 AJ Maastricht (Netherlands); Schultz, Carl [Department of Cardiology, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands); Niessen, Wiro [Quantitative Imaging Group, Faculty of Applied Sciences, Delft University of Technology, 2628 CJ Delft, The Netherlands and Biomedical Imaging Group Rotterdam, Departments of Radiology and Medical Informatics, Erasmus Medical Center, 3015 GE Rotterdam (Netherlands)

    2014-09-15

    Purpose: The authors aim to improve image guidance during percutaneous coronary interventions of chronic total occlusions (CTO) by providing information obtained from computed tomography angiography (CTA) to the cardiac interventionist. To this end, the authors investigate a method to register a 3D CTA model to biplane reconstructions. Methods: The authors developed a method for registering preoperative coronary CTA with intraoperative biplane x-ray angiography (XA) images via 3D models of the coronary arteries. The models are extracted from the CTA and biplane XA images, and are temporally aligned based on CTA reconstruction phase and XA ECG signals. Rigid spatial alignment is achieved with a robust probabilistic point set registration approach using Gaussian mixture models (GMMs). This approach is extended by including orientation in the Gaussian mixtures and by weighting bifurcation points. The method is evaluated on retrospectively acquired coronary CTA datasets of 23 CTO patients for which biplane XA images are available. Results: The Gaussian mixture model approach achieved a median registration accuracy of 1.7 mm. The extended GMM approach including orientation was not significantly different (P > 0.1) but did improve robustness with regards to the initialization of the 3D models. Conclusions: The authors demonstrated that the GMM approach can effectively be applied to register CTA to biplane XA images for the purpose of improving image guidance in percutaneous coronary interventions.

  7. A 3D similarity method for scaffold hopping from known drugs or natural ligands to new chemotypes.

    Science.gov (United States)

    Jenkins, Jeremy L; Glick, Meir; Davies, John W

    2004-12-01

    A primary goal of 3D similarity searching is to find compounds with similar bioactivity to a reference ligand but with different chemotypes, i.e., "scaffold hopping". However, an adequate description of chemical structures in 3D conformational space is difficult due to the high-dimensionality of the problem. We present an automated method that simplifies flexible 3D chemical descriptions in which clustering techniques traditionally used in data mining are exploited to create "fuzzy" molecular representations called FEPOPS (feature point pharmacophores). The representations can be used for flexible 3D similarity searching given one or more active compounds without a priori knowledge of bioactive conformations or pharmacophores. We demonstrate that similarity searching with FEPOPS significantly enriches for actives taken from in-house high-throughput screening datasets and from MDDR activity classes COX-2, 5-HT3A, and HIV-RT, while also scaffold or ring-system hopping to new chemical frameworks. Further, inhibitors of target proteins (dopamine 2 and retinoic acid receptor) are recalled by FEPOPS by scaffold hopping from their associated endogenous ligands (dopamine and retinoic acid). Importantly, the method excels in comparison to commonly used 2D similarity methods (DAYLIGHT, MACCS, Pipeline Pilot fingerprints) and a commercial 3D method (Pharmacophore Distance Triplets) at finding novel scaffold classes given a single query molecule.