WorldWideScience

Sample records for 3-d fourier domain

  1. 3D homogeneity study in PMMA layers using a Fourier domain OCT system

    Science.gov (United States)

    Briones-R., Manuel de J.; Torre-Ibarra, Manuel H. De La; Tavera, Cesar G.; Luna H., Juan M.; Mendoza-Santoyo, Fernando

    2016-11-01

    Micro-metallic particles embedded in polymers are now widely used in several industrial applications in order to modify the mechanical properties of the bulk. A uniform distribution of these particles inside the polymers is highly desired for instance, when a biological backscattering is simulated or a bio-framework is designed. A 3D Fourier domain optical coherence tomography system to detect the polymer's internal homogeneity is proposed. This optical system has a 2D camera sensor array that records a fringe pattern used to reconstruct with a single shot the tomographic image of the sample. The system gathers the full 3D tomographic and optical phase information during a controlled deformation by means of a motion linear stage. This stage avoids the use of expensive tilting stages, which in addition are commonly controlled by piezo drivers. As proof of principle, a series of different deformations were proposed to detect the uniform or non-uniform internal deposition of copper micro particles. The results are presented as images coming from the 3D tomographic micro reconstruction of the samples, and the 3D optical phase information that identifies the in-homogeneity regions within the Poly methyl methacrylate (PMMA) volume.

  2. Real-time 3D Fourier-domain optical coherence tomography guided microvascular anastomosis

    Science.gov (United States)

    Huang, Yong; Ibrahim, Zuhaib; Lee, W. P. A.; Brandacher, Gerald; Kang, Jin U.

    2013-03-01

    Vascular and microvascular anastomosis is considered to be the foundation of plastic and reconstructive surgery, hand surgery, transplant surgery, vascular surgery and cardiac surgery. In the last two decades innovative techniques, such as vascular coupling devices, thermo-reversible poloxamers and suture-less cuff have been introduced. Intra-operative surgical guidance using a surgical imaging modality that provides in-depth view and 3D imaging can improve outcome following both conventional and innovative anastomosis techniques. Optical coherence tomography (OCT) is a noninvasive high-resolution (micron level), high-speed, 3D imaging modality that has been adopted widely in biomedical and clinical applications. In this work we performed a proof-of-concept evaluation study of OCT as an assisted intraoperative and post-operative imaging modality for microvascular anastomosis of rodent femoral vessels. The OCT imaging modality provided lateral resolution of 12 μm and 3.0 μm axial resolution in air and 0.27 volume/s imaging speed, which could provide the surgeon with clearly visualized vessel lumen wall and suture needle position relative to the vessel during intraoperative imaging. Graphics processing unit (GPU) accelerated phase-resolved Doppler OCT (PRDOCT) imaging of the surgical site was performed as a post-operative evaluation of the anastomosed vessels and to visualize the blood flow and thrombus formation. This information could help surgeons improve surgical precision in this highly challenging anastomosis of rodent vessels with diameter less than 0.5 mm. Our imaging modality could not only detect accidental suture through the back wall of lumen but also promptly diagnose and predict thrombosis immediately after reperfusion. Hence, real-time OCT can assist in decision-making process intra-operatively and avoid post-operative complications.

  3. Fourier Domain Sensing

    Science.gov (United States)

    Feldkhun, Daniel (Inventor); Wagner, Kelvin H. (Inventor)

    2013-01-01

    Methods and systems are disclosed of sensing an object. A first radiation is spatially modulated to generate a structured second radiation. The object is illuminated with the structured second radiation such that the object produces a third radiation in response. Apart from any spatially dependent delay, a time variation of the third radiation is spatially independent. With a single-element detector, a portion of the third radiation is detected from locations on the object simultaneously. At least one characteristic of a sinusoidal spatial Fourier-transform component of the object is estimated from a time-varying signal from the detected portion of the third radiation.

  4. Subharmonic Fourier domain mode locking.

    Science.gov (United States)

    Eigenwillig, Christoph M; Wieser, Wolfgang; Biedermann, Benjamin R; Huber, Robert

    2009-03-15

    We demonstrate a subharmonically Fourier domain mode-locked wavelength-swept laser source with a substantially reduced cavity fiber length. In contrast to a standard Fourier domain mode-locked configuration, light is recirculated repetitively in the delay line with the optical bandpass filter used as switch. The laser has a fundamental optical round trip frequency of 285 kHz and can be operated at integer fractions thereof (subharmonics). Sweep ranges up to 95 nm full width centred at 1317 nm are achieved at the 1/5th subharmonic. A maximum sensitivity of 116 dB and an axial resolution of 12 microm in air are measured at an average sweep power of 12 mW. A sensitivity roll-off of 11 dB over 4 mm and 25 dB over 10 mm is observed and optical coherence tomography imaging is demonstrated. Besides the advantage of a reduced fiber length, subharmonic Fourier domain mode locking (shFDML) enables simple scaling of the sweep speed by extracting light from the delay part of the resonator. A sweep rate of 570 kHz is achieved. Characteristic features of shFDML operation, such as power leakage during fly-back and cw breakthrough, are investigated.

  5. Potential-Field Forward Modeling and Inversion Using 3D Fast Fourier Transforms

    Science.gov (United States)

    Phillips, J. D.; Caratori Tontini, F.; Cocchi, L.

    2008-12-01

    Although 1D and 2D fast Fourier transforms (FFTs) have long been used for the filtering, interpretation, and modeling of potential-field data, 3D FFTs have not enjoyed similar popularity. This may change with the recent discovery (Caratori Tontini et al., in press, JGR) that simple 3D FFT filters can be used to transform distributions of density (or magnetization) within a box-shaped 3D volume into gravity (or magnetic) fields within the same volume. For example, the continuous 3D Fourier transform of the vertical gravity anomaly Δgz(x,y,z) in a volume is related to the 3D Fourier transform of the density ρ(x,y,z) in the volume by ℑ[Δgz] = i4πG(kz/ | k | 2)ℑ[ρ]; | k | ≠0, (1) where G is the gravitational constant, kx, ky, kz are wavenumbers, and | k | 2 = kx2+ ky2+ kz2. (2) Translating (1) into a digital FFT filtering operation requires careful consideration of the periodicity of the density distribution and the gravity field. Nevertheless, (1) provides a highly efficient way to calculate the vertical gravity anomaly of a 3D density distribution within a few minutes. The calculated gravity anomaly can be sampled at random points or on an arbitrary surface using tri-linear interpolation. An equivalent space- domain calculation of the gravity field on an arbitrary surface can take many hours. The inverse relation to (1) does not appear to offer a practical approach for calculating a reliable density distribution from observed gravity data. This is because the data would have to cover a substantial portion of the model volume, and because the transformation is undefined on the plane kz = 0, where both the denominator of the filter kernel and the Fourier transform of the gravity field are identically zero. Numerical experiments show that the density distribution resulting from the power on the plane kz = 0 represents a classic Parker annihilator. This annihilator can be calculated from the density distribution but not from the gravity field, as would be

  6. Mechanism of 3D domain swapping in bovine seminal ribonuclease

    NARCIS (Netherlands)

    Spadaccini, Roberta; Ercole, Carmine; Graziano, Giuseppe; Wechselberger, Rainer; Boelens, Rolf; Picone, Delia

    2014-01-01

    3D domain swapping (3D-DS) is a complex protein aggregation process for which no unique mechanism exists. We report an analysis of 3D-DS in bovine seminal ribonuclease, a homodimeric protein whose subunits are linked by two disulfide bridges, based on NMR and biochemical studies. The presence of the

  7. Oversampling analysis in fractional Fourier domain

    Institute of Scientific and Technical Information of China (English)

    ZHANG Feng; TAO Ran; WANG Yue

    2009-01-01

    Oversampling is widely used in practical applications of digital signal processing. As the fractional Fourier transform has been developed and applied in signal processing fields, it is necessary to consider the oversampling theorem in the fractional Fourier domain. In this paper, the oversampling theorem in the fractional Fourier domain is analyzed. The fractional Fourier spectral relation between the original oversampled sequence and its subsequences is derived first, and then the expression for exact reconstruction of the missing samples in terms of the subsequences is obtained. Moreover, by taking a chirp signal as an example, it is shown that, reconstruction of the missing samples in the oversampled signal Is suitable in the fractional Fourier domain for the signal whose time-frequency distribution has the minimum support in the fractional Fourier domain.

  8. Fourier Transform Moire Deflectometry for Measuring the 3-D Temperature Field

    Institute of Scientific and Technical Information of China (English)

    MA Li; WANG Ming; LIU Song; QI Xiaopin

    2000-01-01

    Fourier transform evaluation of fringe phase is applied to Moire deflectometry. 3-D gas temperature distribution for a given layer is reconstructed by optical tomography. The results show that the high-precise and automatic measurement for the 3-D gas temperature field can be realized by this technique.

  9. Fourier phase in Fourier-domain optical coherence tomography.

    Science.gov (United States)

    Uttam, Shikhar; Liu, Yang

    2015-12-01

    Phase of an electromagnetic wave propagating through a sample-of-interest is well understood in the context of quantitative phase imaging in transmission-mode microscopy. In the past decade, Fourier-domain optical coherence tomography has been used to extend quantitative phase imaging to the reflection-mode. Unlike transmission-mode electromagnetic phase, however, the origin and characteristics of reflection-mode Fourier phase are poorly understood, especially in samples with a slowly varying refractive index. In this paper, the general theory of Fourier phase from first principles is presented, and it is shown that Fourier phase is a joint estimate of subresolution offset and mean spatial frequency of the coherence-gated sample refractive index. It is also shown that both spectral-domain phase microscopy and depth-resolved spatial-domain low-coherence quantitative phase microscopy are special cases of this general theory. Analytical expressions are provided for both, and simulations are presented to explain and support the theoretical results. These results are further used to show how Fourier phase allows the estimation of an axial mean spatial frequency profile of the sample, along with depth-resolved characterization of localized optical density change and sample heterogeneity. Finally, a Fourier phase-based explanation of Doppler optical coherence tomography is also provided.

  10. 3D viscous-spring artificial boundary in time domain

    Institute of Scientific and Technical Information of China (English)

    Liu Jingbo; Du Yixin; Du Xiuli; Wang Zhenyu; Wu Jun

    2006-01-01

    After a brief review of studies on artificial boundaries in dynamic soil-structure interaction, a three-dimensional viscous-spring artificial boundary (VSAB) in the time domain is developed in this paper. First, the 3D VSAB equations in the normal and tangential directions are derived based on the elastic wave motion theory. Secondly, a numerical simulation technique of wave motion equations along with the VSAB condition in the time domain is studied. Finally, numerical examples of some classical elastic wave motion problems are presented and the results are compared with the associated theoretical solutions, demonstrating that high precision and adequate stability can be achieved by using the proposed 3D VSAB. The proposed 3D VSAB can be conveniently incorporated in the general finite element program, which is commonly used to study dynamic soil-structure interaction problems.

  11. Modeling open nanophotonic systems using the Fourier modal method: Generalization to 3D Cartesian coordinates

    DEFF Research Database (Denmark)

    Häyrynen, Teppo; Østerkryger, Andreas Dyhl; de Lasson, Jakob Rosenkrantz

    2017-01-01

    . Am. A 33, 1298 (2016)]. Here, we generalize the approach to three-dimensional (3D) Cartesian coordinates allowing for the modeling of rectangular geometries in open space. The open boundary condition is a consequence of having an infinite computational domain described using basis functions...... convergence enabling more accurate and efficient modeling of open 3D nanophotonic structures....

  12. Structure in the 3D Galaxy Distribution. III. Fourier Transforming the Universe: Phase and Power Spectra

    Science.gov (United States)

    Scargle, Jeffrey D.; Way, M. J.; Gazis, P. G.

    2017-01-01

    We demonstrate the effectiveness of a relatively straightforward analysis of the complex 3D Fourier transform of galaxy coordinates derived from redshift surveys. Numerical demonstrations of this approach are carried out on a volume-limited sample of the Sloan Digital Sky Survey redshift survey. The direct unbinned transform yields a complex 3D data cube quite similar to that from the Fast Fourier Transform of finely binned galaxy positions. In both cases, deconvolution of the sampling window function yields estimates of the true transform. Simple power spectrum estimates from these transforms are roughly consistent with those using more elaborate methods. The complex Fourier transform characterizes spatial distributional properties beyond the power spectrum in a manner different from (and we argue is more easily interpreted than) the conventional multipoint hierarchy. We identify some threads of modern large-scale inference methodology that will presumably yield detections in new wider and deeper surveys.

  13. Mechanism of 3D domain swapping in bovine seminal ribonuclease.

    Science.gov (United States)

    Spadaccini, Roberta; Ercole, Carmine; Graziano, Giuseppe; Wechselberger, Rainer; Boelens, Rolf; Picone, Delia

    2014-02-01

    3D domain swapping (3D-DS) is a complex protein aggregation process for which no unique mechanism exists. We report an analysis of 3D-DS in bovine seminal ribonuclease, a homodimeric protein whose subunits are linked by two disulfide bridges, based on NMR and biochemical studies. The presence of the covalent bonds between the subunits stabilizes the unswapped dimer, and allows distinct evaluation of the structural and dynamic effects of the swapping with respect to the dimerization process. In comparison with the monomeric subunit, which, in solution has a compact structure without any propensity for local unfolding, both swapped and unswapped dimers show increased flexibility. NMR analysis, together with urea denaturation and hydrogen–deuterium exchange data, indicates that the two dimers have increased conformational fluctuations. Furthermore, we found that the rate-limiting step of both the swapping and unswapping pathways is the detachment of the N-terminal helices from the monomers. These results suggest a new general mechanism in which a dimeric intermediate could facilitate 3D-DS in globular proteins.

  14. Masked object registration in the Fourier domain.

    Science.gov (United States)

    Padfield, Dirk

    2012-05-01

    Registration is one of the most common tasks of image analysis and computer vision applications. The requirements of most registration algorithms include large capture range and fast computation so that the algorithms are robust to different scenarios and can be computed in a reasonable amount of time. For these purposes, registration in the Fourier domain using normalized cross-correlation is well suited and has been extensively studied in the literature. Another common requirement is masking, which is necessary for applications where certain regions of the image that would adversely affect the registration result should be ignored. To address these requirements, we have derived a mathematical model that describes an exact form for embedding the masking step fully into the Fourier domain so that all steps of translation registration can be computed efficiently using Fast Fourier Transforms. We provide algorithms and implementation details that demonstrate the correctness of our derivations. We also demonstrate how this masked FFT registration approach can be applied to improve the Fourier-Mellin algorithm that calculates translation, rotation, and scale in the Fourier domain. We demonstrate the computational efficiency, advantages, and correctness of our algorithm on a number of images from real-world applications. Our framework enables fast, global, parameter-free registration of images with masked regions.

  15. FMRI 3D registration based on Fourier space subsets using neural networks.

    Science.gov (United States)

    Freire, Luis C; Gouveia, Ana R; Godinho, Fernando M

    2010-01-01

    In this work, we present a neural network (NN) based method designed for 3D rigid-body registration of FMRI time series, which relies on a limited number of Fourier coefficients of the images to be aligned. These coefficients, which are comprised in a small cubic neighborhood located at the first octant of a 3D Fourier space (including the DC component), are then fed into six NN during the learning stage. Each NN yields the estimates of a registration parameter. The proposed method was assessed for 3D rigid-body transformations, using DC neighborhoods of different sizes. The mean absolute registration errors are of approximately 0.030 mm in translations and 0.030 deg in rotations, for the typical motion amplitudes encountered in FMRI studies. The construction of the training set and the learning stage are fast requiring, respectively, 90 s and 1 to 12 s, depending on the number of input and hidden units of the NN. We believe that NN-based approaches to the problem of FMRI registration can be of great interest in the future. For instance, NN relying on limited K-space data (possibly in navigation echoes) can be a valid solution to the problem of prospective (in frame) FMRI registration.

  16. Volumetric (3D) compressive sensing spectral domain optical coherence tomography.

    Science.gov (United States)

    Xu, Daguang; Huang, Yong; Kang, Jin U

    2014-11-01

    In this work, we proposed a novel three-dimensional compressive sensing (CS) approach for spectral domain optical coherence tomography (SD OCT) volumetric image acquisition and reconstruction. Instead of taking a spectral volume whose size is the same as that of the volumetric image, our method uses a sub set of the original spectral volume that is under-sampled in all three dimensions, which reduces the amount of spectral measurements to less than 20% of that required by the Shan-non/Nyquist theory. The 3D image is recovered from the under-sampled spectral data dimension-by-dimension using the proposed three-step CS reconstruction strategy. Experimental results show that our method can significantly reduce the sampling rate required for a volumetric SD OCT image while preserving the image quality.

  17. MULTIVARIATE FOURIER SERIES OVER A CLASS OF NON TENSOR-PRODUCT PARTITION DOMAINS

    Institute of Scientific and Technical Information of China (English)

    Jiachang Sun

    2003-01-01

    This paper finds a way to extend the well-known Fourier methods, to so-called n+1directions partition domains in n-dimension. In particular, in 2-D and 3-D cases, westudy Fourier methods over 3-direction parallel hexagon partitions and 4-direction parallelparallelogram dodecahedron partitions, respectively. It has pointed that, the most conceptsand results of Fourier methods on tensor-product case, such as periodicity, orthogonality ofFourier basis system, partial sum of Fourier series and its approximation behavior, can bemoved on the new non tensor-product partition case.

  18. Deep subwavelength nanometric image reconstruction using Fourier domain optical normalization

    Institute of Scientific and Technical Information of China (English)

    Jing Qin; Richard M Silver; Bryan M Barnes; Hui Zhou; Ronald G Dixson; Mark-Alexander Henn

    2016-01-01

    Quantitative optical measurements of deep subwavelength,three-dimensional (3D),nanometric structures with sensitivity to sub-nanometer details address a ubiquitous measurement challenge.A Fourier domain normalization approach is used in the Fourier optical imaging code to simulate the full 3D scattered light field of nominally 15 nm-sized structures,accurately replicating the light field as a function of the focus position.Using the full 3D light field,nanometer scale details such as a 2 nm thin conformal oxide and nanometer topography are rigorously fitted for features less than one-thirtiethof the wavelength in size.The densely packed structures are positioned nearly an order of magnitude closer than the conventional Rayleigh resolution limit and can be measured with sub-nanometer parametric uncertainties.This approach enables a practical measurement sensitivity to size variations of only a few atoms in size using a high-throughput optical configuration with broad application in measuring nanometric structures and nanoelectronic devices.

  19. Fourier transforms in the complex domain

    CERN Document Server

    Wiener, N

    1934-01-01

    With the aid of Fourier-Mellin transforms as a tool in analysis, the authors were able to attack such diverse analytic questions as those of quasi-analytic functions, Mercer's theorem on summability, Milne's integral equation of radiative equilibrium, the theorems of Münz and Szász concerning the closure of sets of powers of an argument, Titchmarsh's theory of entire functions of semi-exponential type with real negative zeros, trigonometric interpolation and developments in polynomials of the form \\sum^N_1A_ne^{i\\lambda_nx}, lacunary series, generalized harmonic analysis in the complex domain,

  20. A new way to characterize autostereoscopic 3D displays using Fourier optics instrument

    Science.gov (United States)

    Boher, P.; Leroux, T.; Bignon, T.; Collomb-Patton, V.

    2009-02-01

    Auto-stereoscopic 3D displays offer presently the most attractive solution for entertainment and media consumption. Despite many studies devoted to this type of technology, efficient characterization methods are still missing. We present here an innovative optical method based on high angular resolution viewing angle measurements with Fourier optics instrument. This type of instrument allows measuring the full viewing angle aperture of the display very rapidly and accurately. The system used in the study presents a very high angular resolution below 0.04 degree which is mandatory for this type of characterization. We can predict from the luminance or color viewing angle measurements of the different views of the 3D display what will be seen by an observer at any position in front of the display. Quality criteria are derived both for 3D and standard properties at any observer position and Qualified Stereo Viewing Space (QSVS) is determined. The use of viewing angle measurements at different locations on the display surface during the observer computation gives more realistic estimation of QSVS and ensures its validity for the entire display surface. Optimum viewing position, viewing freedom, color shifts and standard parameters are also quantified. Simulation of the moire issues can be made leading to a better understanding of their origin.

  1. Spatial correlation in 3D MIMO channels using fourier coefficients of power spectrums

    KAUST Repository

    Nadeem, Qurrat-Ul-Ain

    2015-03-01

    In this paper, an exact closed-form expression for the Spatial Correlation Function (SCF) is derived for the standardized three-dimensional (3D) multiple-input multiple-output (MIMO) channel. This novel SCF is developed for a uniform linear array of antennas with non-isotropic antenna patterns. The proposed method resorts to the spherical harmonic expansion (SHE) of plane waves and the trigonometric expansion of Legendre and associated Legendre polynomials to obtain a closed-form expression for the SCF for arbitrary angular distributions and antenna patterns. The resulting expression depends on the underlying angular distributions and antenna patterns through the Fourier Series (FS) coefficients of power azimuth and elevation spectrums. The novelty of the proposed method lies in the SCF being valid for any 3D propagation environment. Numerical results validate the proposed analytical expression and study the impact of angular spreads on the correlation. The derived SCF will help evaluate the performance of correlated 3D MIMO channels in the future. © 2015 IEEE.

  2. 3D Vectorial Time Domain Computational Integrated Photonics

    Energy Technology Data Exchange (ETDEWEB)

    Kallman, J S; Bond, T C; Koning, J M; Stowell, M L

    2007-02-16

    The design of integrated photonic structures poses considerable challenges. 3D-Time-Domain design tools are fundamental in enabling technologies such as all-optical logic, photonic bandgap sensors, THz imaging, and fast radiation diagnostics. Such technologies are essential to LLNL and WFO sponsors for a broad range of applications: encryption for communications and surveillance sensors (NSA, NAI and IDIV/PAT); high density optical interconnects for high-performance computing (ASCI); high-bandwidth instrumentation for NIF diagnostics; micro-sensor development for weapon miniaturization within the Stockpile Stewardship and DNT programs; and applications within HSO for CBNP detection devices. While there exist a number of photonics simulation tools on the market, they primarily model devices of interest to the communications industry. We saw the need to extend our previous software to match the Laboratory's unique emerging needs. These include modeling novel material effects (such as those of radiation induced carrier concentrations on refractive index) and device configurations (RadTracker bulk optics with radiation induced details, Optical Logic edge emitting lasers with lateral optical inputs). In addition we foresaw significant advantages to expanding our own internal simulation codes: parallel supercomputing could be incorporated from the start, and the simulation source code would be accessible for modification and extension. This work addressed Engineering's Simulation Technology Focus Area, specifically photonics. Problems addressed from the Engineering roadmap of the time included modeling the Auston switch (an important THz source/receiver), modeling Vertical Cavity Surface Emitting Lasers (VCSELs, which had been envisioned as part of fast radiation sensors), and multi-scale modeling of optical systems (for a variety of applications). We proposed to develop novel techniques to numerically solve the 3D multi-scale propagation problem for both the

  3. Accurate 2D/3D electromagnetic modeling for time-domain airborne EM systems

    Science.gov (United States)

    Yin, C.; Hodges, G.

    2012-12-01

    The existing industry software cannot deliver correct results for 3D time-domain airborne EM responses. In this paper, starting from the Fourier transform and convolution, we compare the stability of different modeling techniques and analyze the reason for instable calculations of the time-domain airborne EM responses. We find that the singularity of the impulse responses of EM systems at very early time that are used in the convolution is responsible for the instability of the modeling (Fig.1). Based on this finding, we put forward an algorithm that uses step response rather than impulse response of the airborne EM system for the convolution and create a stable algorithm that delivers precise results and maintains well the integral/derivative relationship between the magnetic field B and the magnetic induction dB/dt. A three-step transformation procedure for the modeling is proposed: 1) output the frequency-domain EM response data from the existing software; 2) transform into step-response by digital Fourier/Hankel transform; 3) convolve the step response with the transmitting current or its derivatives. The method has proved to be working very well (Fig. 2). The algorithm can be extended to the modeling of other time-domain ground and airborne EM system responses.Fig. 1: Comparison of impulse and step responses for an airborne EM system Fig. 2: Bz and dBz/dt calculated from step (middle panel) and impulse responses (lower panel) for the same 3D model as in Fig.1.

  4. Integrated phase unwrapping algorithm for the measurement of 3D shapes by Fourier transform profilometry

    Institute of Scientific and Technical Information of China (English)

    Shuang-qing WU; Yin ZHANG; San-yuan ZHANG; Xiu-zi YE

    2009-01-01

    An integrated and reliable phase unwrapping algorithm is proposed based on residues and blocking-lines detection,closed contour extraction and quality map ordering for the measurement of 3D shapes by Fourier-transform profilometry (FTP).The proposed algorithm first detects the residues on the wrapped phase image, applies wavelet analysis to generate the blockinglines that can just connect the residues of opposite polarity, then carries out the morphology operation to extract the closed contour of the shape, and finally uses the modulation intensity information and the Laplacian of Gaussian operation of the wrapped phase image as the quality map. The unwrapping process is completed from a region of high reliability to that of low reliability and the blocking-lines can prevent the phase error propagation effectively. Furthermore, by using the extracted closed contour to exclude the invalid areas from the phase unwrapping process, the algorithm becomes more efficient. The experiment shows the effectiveness of the new algorithm.

  5. 3D Image Modelling and Specific Treatments in Orthodontics Domain

    Directory of Open Access Journals (Sweden)

    Dionysis Goularas

    2007-01-01

    Full Text Available In this article, we present a 3D specific dental plaster treatment system for orthodontics. From computer tomography scanner images, we propose first a 3D image modelling and reconstruction method of the Mandible and Maxillary based on an adaptive triangulation allowing management of contours meant for the complex topologies. Secondly, we present two specific treatment methods directly achieved on obtained 3D model allowing the automatic correction for the setting in occlusion of the Mandible and the Maxillary, and the teeth segmentation allowing more specific dental examinations. Finally, these specific treatments are presented via a client/server application with the aim of allowing a telediagnosis and treatment.

  6. A Comparison of Splitting Techniques for 3D Complex Padé Fourier Finite Difference Migration

    Directory of Open Access Journals (Sweden)

    Jessé C. Costa

    2011-01-01

    Full Text Available Three-dimensional wave-equation migration techniques are still quite expensive because of the huge matrices that need to be inverted. Several techniques have been proposed to reduce this cost by splitting the full 3D problem into a sequence of 2D problems. We compare the performance of splitting techniques for stable 3D Fourier finite-difference (FFD migration techniques in terms of image quality and computational cost. The FFD methods are complex Padé FFD and FFD plus interpolation, and the compared splitting techniques are two- and four-way splitting as well as alternating four-way splitting, that is, splitting into the coordinate directions at one depth and the diagonal directions at the next depth level. From numerical examples in homogeneous and inhomogeneous media, we conclude that, though theoretically less accurate, alternate four-way splitting yields results of comparable quality as full four-way splitting at the cost of two-way splitting.

  7. Time domain topology optimization of 3D nanophotonic devices

    DEFF Research Database (Denmark)

    Elesin, Yuriy; Lazarov, Boyan Stefanov; Jensen, Jakob Søndergaard;

    2014-01-01

    We present an efficient parallel topology optimization framework for design of large scale 3D nanophotonic devices. The code shows excellent scalability and is demonstrated for optimization of broadband frequency splitter, waveguide intersection, photonic crystal-based waveguide and nanowire...

  8. A NONOVERLAPPING DOMAIN DECOMPOSITION METHOD FOR EXTERIOR 3-D PROBLEM

    Institute of Scientific and Technical Information of China (English)

    De-hao Yu; Ji-ming Wu; Ji-ming Wu

    2001-01-01

    In this paper, a nonoverlapping domain decomposition method, which is based on the natural boundary reduction(cf. [4, 13, 15]), is developed to solve the boundary value problem in exterior three-dimensional domain of general shape. Convergence analyses both for the exterior spherical domain and the general exterior domain are made. Some numerical examples are also provided to illustrate the method.

  9. Time-Domain Analysis for 3-D Moored Systems

    Institute of Scientific and Technical Information of China (English)

    肖越; 王言英

    2004-01-01

    In the paper, a comprehensive numerical study on the moored system is performed in time domain. The moored system, which is composed of the floating body sub-system and the mooring line sub-system, is calculated as a whole system by coupling. A time-domain method is applied to the analysis of the mooring line sub-system, and at the same time, an indirect time-domain method translated from frequency-domain to time-domain is developed to calculate the floating body sub-system. In the end, an FPSO vessel is calculated as a numerical example by the present method. A comparison of the result of the model test and that of the numerical method indicates that the present method is exact and effective.

  10. MULTIVARIATE FOURIER TRANSFORM METHODS OVER SIMPLEX AND SUPER-SIMPLEX DOMAINS

    Institute of Scientific and Technical Information of China (English)

    Jiachang Sun

    2006-01-01

    In this paper we propose the well-known Fourier method on some non-tensor product domains in Rd, including simplex and so-called super-simplex which consists of (d + 1)! simplices. As two examples, in 2-D and 3-D case a super-simplex is shown as a paralle lhexagon and a parallel quadrilateral dodecahedron, respectively. We have extended most of concepts and results of the traditional Fourier methods on multivariate cases, such as Fourier basis system, Fourier series, discrete Fourier transform (DFT) and its fast algorithm(FFT) on the super-simplex, as well as generalized sine and cosine transforms (DST, DCT) and related fast algorithms over a simplex. The relationship between the basic orthogonal system and eigen-functions of a Laplacian-like operator over these domains is explored.

  11. Segmented Domain Decomposition Multigrid For 3-D Turbomachinery Flows

    Science.gov (United States)

    Celestina, M. L.; Adamczyk, J. J.; Rubin, S. G.

    2001-01-01

    A Segmented Domain Decomposition Multigrid (SDDMG) procedure was developed for three-dimensional viscous flow problems as they apply to turbomachinery flows. The procedure divides the computational domain into a coarse mesh comprised of uniformly spaced cells. To resolve smaller length scales such as the viscous layer near a surface, segments of the coarse mesh are subdivided into a finer mesh. This is repeated until adequate resolution of the smallest relevant length scale is obtained. Multigrid is used to communicate information between the different grid levels. To test the procedure, simulation results will be presented for a compressor and turbine cascade. These simulations are intended to show the ability of the present method to generate grid independent solutions. Comparisons with data will also be presented. These comparisons will further demonstrate the usefulness of the present work for they allow an estimate of the accuracy of the flow modeling equations independent of error attributed to numerical discretization.

  12. Smart 3D Building Infrastructures: Linking GIs with Other Domains

    Science.gov (United States)

    Knoth, L.; Mittlböck, M.; Vockner, B.

    2016-10-01

    While digitization as well as new technologies and paradigms such as the Internet of Things (IoT) help solving issues within smart factories, they simultaneously trigger new challenges. The creation of smart factories, whose components communicate in an intelligent manner, is located at the frontier of the virtual and the real world. To connect both worlds, spatio-temporal information can be used to structure and integrate data streams, models and other content such as documents in Enterprise Spatial Data Infrastructures (SDIs). One part of Enterprise SDIs is building information, to support and enhance contextualization of indoor environments and its corresponding information in form of sensor measurements and other digital resources. We identified five major requirements: (1) Three-dimensionality, (2) (Re-)use of available data, (3) Use of GIS-principles and standards, (4) Adaptivity, and (5) Completeness. Our novel approach "OLS3D" addresses these requirements through the use of SDI-principles and linked-data strategies. A prototypical implementation was developed in order to show the potential of our approach.

  13. Exact and approximate Fourier rebinning algorithms for the solution of the data truncation problem in 3-D PET.

    Science.gov (United States)

    Bouallègue, Fayçal Ben; Crouzet, Jean-François; Comtat, Claude; Fourcade, Marjolaine; Mohammadi, Bijan; Mariano-Goulart, Denis

    2007-07-01

    This paper presents an extended 3-D exact rebinning formula in the Fourier space that leads to an iterative reprojection algorithm (iterative FOREPROJ), which enables the estimation of unmeasured oblique projection data on the basis of the whole set of measured data. In first approximation, this analytical formula also leads to an extended Fourier rebinning equation that is the basis for an approximate reprojection algorithm (extended FORE). These algorithms were evaluated on numerically simulated 3-D positron emission tomography (PET) data for the solution of the truncation problem, i.e., the estimation of the missing portions in the oblique projection data, before the application of algorithms that require complete projection data such as some rebinning methods (FOREX) or 3-D reconstruction algorithms (3DRP or direct Fourier methods). By taking advantage of all the 3-D data statistics, the iterative FOREPROJ reprojection provides a reliable alternative to the classical FOREPROJ method, which only exploits the low-statistics nonoblique data. It significantly improves the quality of the external reconstructed slices without loss of spatial resolution. As for the approximate extended FORE algorithm, it clearly exhibits limitations due to axial interpolations, but will require clinical studies with more realistic measured data in order to decide on its pertinence.

  14. Fourier and granulometry methods on 3D images of soil surfaces for evaluating soil aggregate size distribution

    DEFF Research Database (Denmark)

    Jensen, T.; Green, O.; Munkholm, Lars Juhl;

    2016-01-01

    The goal of this research is to present and compare two methods for evaluating soil aggregate size distribution based on high resolution 3D images of the soil surface. The methods for analyzing the images are discrete Fourier transform and granulometry. The results of these methods correlate...... with a measured weight distribution of the soil aggregates. The results have shown that it is possible to distinguish between the cultivated and the uncultivated soil surface. A sensor system suitable for capturing in-situ high resolution 3D images of the soil surface is also described. This sensor system...... is based on a SICK LMS111 laser range scanner....

  15. Structure of Pseudoknot PK26 Shows 3D Domain Swapping in an RNA

    Science.gov (United States)

    Lietzke, Susan E; Barnes, Cindy L.

    1998-01-01

    3D domain swapping provides a facile pathway for the evolution of oligomeric proteins and allosteric mechanisms and a means for using monomer-oligomer equilibria to regulate biological activity. The term "3D domain swapping" describes the exchange of identical domains between two protein monomers to create an oligomer. 3D domain swapping has, so far, only been recognized in proteins. In this study, the structure of the pseudoknot PK26 is reported and it is a clear example of 3D domain swapping in RNA. PK26 was chosen for study because RNA pseudoknots are required structures in several biological processes and they arise frequently in in vitro selection experiments directed against protein targets. PK26 specifically inhibits HIV-1 reverse transcriptase with nanomolar affinity. We have now determined the 3.1 A resolution crystal structure of PK26 and find that it forms a 3D domain swapped dimer. PK26 shows extensive base pairing between and within strands. Formation of the dimer requires the linker region between the pseudoknot folds to adopt a unique conformation that allows a base within a helical stem to skip one base in the stacking register. Rearrangement of the linker would permit a monomeric pseudoknot to form. This structure shows how RNA can use 3D domain swapping to build large scale oligomers like the putative hexamer in the packaging RNA of bacteriophage Phi29.

  16. Validity of Mixed 2D and 3D Cadastral Parcels in the Land Administration Domain Model

    NARCIS (Netherlands)

    Thompson, R.J.; Van Oosterom, P.J.M.

    2012-01-01

    In the move towards a 3D Cadastre, many jurisdictions are considering a hybrid 2D/3D database as either a stage of development or as a target in itself (van Oosterom, Stoter, Ploeger, Thompson and Karki 2011). The Land Administration Domain Model (LADM), which is the underlying model for the ISO 191

  17. 3D seismic modeling and reverse‐time migration with the parallel Fourier method using non‐blocking collective communications

    KAUST Repository

    Chu, Chunlei

    2009-01-01

    The major performance bottleneck of the parallel Fourier method on distributed memory systems is the network communication cost. In this study, we investigate the potential of using non‐blocking all‐to‐all communications to solve this problem by overlapping computation and communication. We present the runtime comparison of a 3D seismic modeling problem with the Fourier method using non‐blocking and blocking calls, respectively, on a Linux cluster. The data demonstrate that a performance improvement of up to 40% can be achieved by simply changing blocking all‐to‐all communication calls to non‐blocking ones to introduce the overlapping capability. A 3D reverse‐time migration result is also presented as an extension to the modeling work based on non‐blocking collective communications.

  18. Digital Backpropagation in the Nonlinear Fourier Domain

    CERN Document Server

    Wahls, Sander; Prilepsky, Jaroslaw E; Poor, H Vincent; Turitsyn, Sergei K

    2015-01-01

    Nonlinear and dispersive transmission impairments in coherent fiber-optic communication systems are often compensated by reverting the nonlinear Schr\\"odinger equation, which describes the evolution of the signal in the link, numerically. This technique is known as digital backpropagation. Typical digital backpropagation algorithms are based on split-step Fourier methods in which the signal has to be discretized in time and space. The need to discretize in both time and space however makes the real-time implementation of digital backpropagation a challenging problem. In this paper, a new fast algorithm for digital backpropagation based on nonlinear Fourier transforms is presented. Aiming at a proof of concept, the main emphasis will be put on fibers with normal dispersion in order to avoid the issue of solitonic components in the signal. However, it is demonstrated that the algorithm also works for anomalous dispersion if the signal power is low enough. Since the spatial evolution of a signal governed by the ...

  19. Double random fractional Fourier domain encoding for optical security

    Science.gov (United States)

    Unnikrishnan, G.; Singh, Kehar

    2000-11-01

    We propose a new optical encryption technique using the fractional Fourier transform. In this method, the data are encrypted to a stationary white noise by two statistically independent random phase masks in fractional Fourier domains. To decrypt the data correctly, one needs to specify the fractional domains in which the input plane, encryption plane, and output planes exist, in addition to the key used for encryption. The use of an anamorphic fractional Fourier transform for the encryption of 2D data is also discussed. We suggest an optical implementation of the proposed idea. Results of a numerical simulation to analyze the performance of the proposed method are presented.

  20. A fast approach to 3D HSQC-based spectroscopy based on a Fourier phase encoding of pre-targeted resonances

    Science.gov (United States)

    Lin, Yulan; Smith, Pieter E. S.; Zhang, Zhiyong; Frydman, Lucio

    2017-01-01

    Multidimensional Nuclear Magnetic Resonance (NMR) provides a unique window into structure and dynamics at an atomic level. Traditionally, given the scan-by-scan time modulation involved in these experiments, the duration of nD NMR increases exponentially with spectral dimensionality. In addition, acquisition times increase as the number of spectral elements being sought in each indirect domain - given by the ratio between the spectral bandwidth being targeted and the resolution desired. These long sampling times can be substantially reduced by exploiting information that is often available from lower-dimensionality acquisitions. This work presents a novel approach that exploits previous 2D information to speed up the acquisition of 3D spectra, based on what we denote as a Time-Optimized FouriEr Encoding (TOFEE) of pre-targeted peaks. Such 3D TOFEE experiments, which present points in common with Hadamard-encoded 3D acquisitions, do not necessarily require more scans than their 2D counterparts. This is here demonstrated based on extensions of 2D Heteronuclear Single-quantum Coherence (HSQC) experiments, to 3D HSQC-TOCSY or 3D HSQC-NOESY acquisitions. The theoretical basis of this new approach is given, and experimental demonstrations are presented on small molecule and protein-based model systems.

  1. PF2fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps.

    Directory of Open Access Journals (Sweden)

    Radhakrishna Bettadapura

    2015-10-01

    Full Text Available There continue to be increasing occurrences of both atomistic structure models in the PDB (possibly reconstructed from X-ray diffraction or NMR data, and 3D reconstructed cryo-electron microscopy (3D EM maps (albeit at coarser resolution of the same or homologous molecule or molecular assembly, deposited in the EMDB. To obtain the best possible structural model of the molecule at the best achievable resolution, and without any missing gaps, one typically aligns (match and fits the atomistic structure model with the 3D EM map. We discuss a new algorithm and generalized framework, named PF(2 fit (Polar Fast Fourier Fitting for the best possible structural alignment of atomistic structures with 3D EM. While PF(2 fit enables only a rigid, six dimensional (6D alignment method, it augments prior work on 6D X-ray structure and 3D EM alignment in multiple ways: Scoring. PF(2 fit includes a new scoring scheme that, in addition to rewarding overlaps between the volumes occupied by the atomistic structure and 3D EM map, rewards overlaps between the volumes complementary to them. We quantitatively demonstrate how this new complementary scoring scheme improves upon existing approaches. PF(2 fit also includes two scoring functions, the non-uniform exterior penalty and the skeleton-secondary structure score, and implements the scattering potential score as an alternative to traditional Gaussian blurring. Search. PF(2 fit utilizes a fast polar Fourier search scheme, whose main advantage is the ability to search over uniformly and adaptively sampled subsets of the space of rigid-body motions. PF(2 fit also implements a new reranking search and scoring methodology that considerably improves alignment metrics in results obtained from the initial search.

  2. Screening retinal transplants with Fourier-domain OCT

    Science.gov (United States)

    Rao, Bin

    2009-02-01

    Transplant technologies have been studied for the recovery of vision loss from retinitis pigmentosa (RP) and age-related macular degeneration (AMD). In several rodent retinal degeneration models and in patients, retinal progenitor cells transplanted as layers to the subretinal space have been shown to restore or preserve vision. The methods for evaluation of transplants are expensive considering the large amount of animals. Alternatively, time-domain Stratus OCT was previously shown to be able to image the morphological structure of transplants to some extent, but could not clearly identify laminated transplants. The efficacy of screening retinal transplants with Fourier-domain OCT was studied on 37 S334ter line 3 rats with retinal degeneration 6-67 days after transplant surgery. The transplants were morphologically categorized as no transplant, detachment, rosettes, small laminated area and larger laminated area with both Fourier-domain OCT and histology. The efficacy of Fourier-domain OCT in screening retinal transplants was evaluated by comparing the categorization results with OCT and histology. Additionally, 4 rats were randomly selected for multiple OCT examinations (1, 5, 9, 14 and 21days post surgery) in order to determine the earliest image time of OCT examination since the transplanted tissue may need some time to show its tendency of growing. Finally, we demonstrated the efficacy of Fourier-domain OCT in screening retinal transplants in early stages and determined the earliest imaging time for OCT. Fourier-domain OCT makes itself valuable in saving resource spent on animals with unsuccessful transplants.

  3. 3D linear inversion of magnetic susceptibility data acquired by frequency domain EMI

    Science.gov (United States)

    Thiesson, J.; Tabbagh, A.; Simon, F.-X.; Dabas, M.

    2017-01-01

    Low induction number EMI instruments are able to simultaneously measure a soil's apparent magnetic susceptibility and electrical conductivity. This family of dual measurement instruments is highly useful for the analysis of soils and archeological sites. However, the electromagnetic properties of soils are found to vary over considerably different ranges: whereas their electrical conductivity varies from ≤ 0.1 to ≥ 100 mS/m, their relative magnetic permeability remains within a very small range, between 1.0001 and 1.01 SI. Consequently, although apparent conductivity measurements need to be inverted using non-linear processes, the variations of the apparent magnetic susceptibility can be approximated through the use of linear processes, as in the case of the magnetic prospection technique. Our proposed 3D inversion algorithm starts from apparent susceptibility data sets, acquired using different instruments over a given area. A reference vertical profile is defined by considering the mode of the vertical distributions of both the electrical resistivity and of the magnetic susceptibility. At each point of the mapped area, the reference vertical profile response is subtracted to obtain the apparent susceptibility variation dataset. A 2D horizontal Fourier transform is applied to these variation datasets and to the dipole (impulse) response of each instrument, a (vertical) 1D inversion is performed at each point in the spectral domain, and finally the resulting dataset is inverse transformed to restore the apparent 3D susceptibility variations. It has been shown that when applied to synthetic results, this method is able to correct the apparent deformations of a buried object resulting from the geometry of the instrument, and to restore reliable quantitative susceptibility contrasts. It also allows the thin layer solution, similar to that used in magnetic prospection, to be implemented. When applied to field data it initially delivers a level of contrast

  4. A dual Fourier-wavelet domain authentication-identification watermark.

    Science.gov (United States)

    Ahmed, Farid

    2007-04-16

    A dual Fourier-Wavelet domain watermarking technique for authentication and identity verification is proposed. Discrete wavelet transform (DWT) domain spread spectrum is used for embedding identity (such as registration number, transaction ID etc.) information. While a blind detector detects an ID, it is important to validate with other ancillary data. To satisfy that requirement, we embed a robust signature and hide it in a mid-band wavelet subband using Fourier domain bit-embedding algorithm. Results are furnished to show the compression tolerance of the method.

  5. Suppression law of quantum states in a 3D photonic fast Fourier transform chip

    Science.gov (United States)

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-01-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong–Ou–Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms. PMID:26843135

  6. Fourier phase-demodulation applied to strip-light 360-degrees profilometry of 3D solids; theoretical principles

    CERN Document Server

    Servin, Manuel; Garnica, Guillermo

    2015-01-01

    360-degrees digitalization of three-dimensional (3D) solids using a projected light-strip is a well established technique. These profilometers project a light-strip over the solid under analysis while the solid is rotated a full revolution. Then a computer program typically extracts the centroid of this light-strip, and by triangulation one obtains the shape of the solid. Here instead of using intensity-based strip centroid estimation, we propose to use Fourier phase-demodulation. This 360-degrees profilometer first constructs a carrier-frequency fringe-pattern by closely adding individual light-strip images. Secondly this high-density fringe-pattern is phase-demodulated using the standard Fourier technique.

  7. Fourier domain OCT imaging of American cockroach nervous system

    Science.gov (United States)

    Wyszkowska, Joanna; Gorczynska, Iwona; Ruminski, Daniel; Karnowski, Karol; Kowalczyk, Andrzej; Stankiewicz, Maria; Wojtkowski, Maciej

    2012-01-01

    In this pilot study we demonstrate results of structural Fourier domain OCT imaging of the nervous system of Periplaneta americana L. (American cockroach). The purpose of this research is to develop an OCT apparatus enabling structural imaging of insect neural system. Secondary purpose of the presented research is to develop methods of the sample preparation and handling during the OCT imaging experiments. We have performed imaging in the abdominal nerve cord excised from the American cockroach. For this purpose we have developed a Fourier domain / spectral OCT system operating at 820 nm wavelength range.

  8. 3DSwap: Curated knowledgebase of proteins involved in 3D domain swapping

    KAUST Repository

    Shameer, Khader

    2011-09-29

    Three-dimensional domain swapping is a unique protein structural phenomenon where two or more protein chains in a protein oligomer share a common structural segment between individual chains. This phenomenon is observed in an array of protein structures in oligomeric conformation. Protein structures in swapped conformations perform diverse functional roles and are also associated with deposition diseases in humans. We have performed in-depth literature curation and structural bioinformatics analyses to develop an integrated knowledgebase of proteins involved in 3D domain swapping. The hallmark of 3D domain swapping is the presence of distinct structural segments such as the hinge and swapped regions. We have curated the literature to delineate the boundaries of these regions. In addition, we have defined several new concepts like \\'secondary major interface\\' to represent the interface properties arising as a result of 3D domain swapping, and a new quantitative measure for the \\'extent of swapping\\' in structures. The catalog of proteins reported in 3DSwap knowledgebase has been generated using an integrated structural bioinformatics workflow of database searches, literature curation, by structure visualization and sequence-structure-function analyses. The current version of the 3DSwap knowledgebase reports 293 protein structures, the analysis of such a compendium of protein structures will further the understanding molecular factors driving 3D domain swapping. The Author(s) 2011.

  9. 3-D superposition for radiotherapy treatment planning using fast Fourier transforms.

    Science.gov (United States)

    Murray, D C; Hoban, P W; Metcalfe, P E; Round, W H

    1989-09-01

    Currently used radiotherapy treatment planning algorithms based on effective path length or scatter function methods do not model electron ranging from photon interaction sites. The superposition (or convolution) technique does model this effect, which is especially important at higher (linear accelerator) energies since the electron range is significant. Another advantage of this method is that it is conceptually simple and models the physical processes directly, rather than using empirically derived methods. A major disadvantage of superposition lies in the large amount of computer time required to generate a plan, especially in three dimensions. To help solve this problem, superposition using an invariant dose spread array (kernel) can be achieved by performing a convolution in Fourier space using fast Fourier transforms (FFTs). A method for 3 dimensional calculation of dose using FFTs is presented. Dose spread arrays are calculated using the EGS Monte Carlo code, and convolved with the TERMA (total energy released per unit mass). In both cases a 10 MV nominal beam energy is modelled by a 10 component spectrum, which is compared to the result obtained using monochromatic energy only (3.0 MeV at the surface). The FFT technique is shown to be significantly faster than standard convolution for medium to large TERMA and dose spread array sizes. The method is shown to be highly accurate for small fields in homogeneous media. For larger fields the central axis depth dose is accurate but the profile shape in the penumbral region becomes slightly distorted. This is because photons incident near the beam edges are not parallel to the cartesian coordinate system used as the convolution framework. However, this effect is sufficiently small to indicate that the convolution method is suitable for use in routine treatment planning.

  10. Discoidin domain receptor 2 regulates the adhesion of fibroblasts to 3D collagen matrices.

    Science.gov (United States)

    Kim, Daehwan; You, Eunae; Min, Na Young; Lee, Kwang-Ho; Kim, Hyoung Kyu; Rhee, Sangmyung

    2013-05-01

    The collagen matrix constitutes the primary extracellular matrix (ECM) portion of mammalian connective tissues in which the interaction of the cell and the surrounding collagen fibers has a significant impact on cell and tissue physiology, including morphogenesis, development and motility. Discoidin domain receptors (DDR1 and DDR2) have been identified as the receptor tyrosine kinases that are activated upon collagen binding. However, there is a lack of evidence regarding the effect of DDRs on the mechanical interaction between fibroblasts and ECM. In this study, we demonstrated that one of the major phosphotyrosine proteins in human fibroblasts during 3D collagen matrix polymerization is DDR2. Treatment of fibroblasts in 3D collagen matrices with platelet-derived growth factor (PDFG) has been shown to increase DDR2 phosphorylation. Silencing of DDR2 with siRNA in fibroblasts significantly reduced the number of dendritic extensions regardless of whether cells were cultured in the collagen or fibronectin 3D matrices. Decreasing dendritic extensions in DDR2-silenced cells has also been shown to decrease the ability of fibroblast entanglement to collagen fibrils in 3D collagen matrices. Finally, we also showed that the silencing of DDR2 decreased the cell migration in 3D nested collagen matrices but had no effect on 3D floating matrix contraction. Collectively, these results suggest that DDR2 functioning is required for the membrane dynamics to control the mechanical attachment of fibroblasts to the 3D collagen matrices in an integrin-independent manner.

  11. A 3D domain decomposition approach for the identification of spatially varying elastic material parameters

    KAUST Repository

    Moussawi, Ali

    2015-02-24

    Summary: The post-treatment of (3D) displacement fields for the identification of spatially varying elastic material parameters is a large inverse problem that remains out of reach for massive 3D structures. We explore here the potential of the constitutive compatibility method for tackling such an inverse problem, provided an appropriate domain decomposition technique is introduced. In the method described here, the statically admissible stress field that can be related through the known constitutive symmetry to the kinematic observations is sought through minimization of an objective function, which measures the violation of constitutive compatibility. After this stress reconstruction, the local material parameters are identified with the given kinematic observations using the constitutive equation. Here, we first adapt this method to solve 3D identification problems and then implement it within a domain decomposition framework which allows for reduced computational load when handling larger problems.

  12. Gravity data inversion to determine 3D topographycal density contrast of Banten area, Indonesia based on fast Fourier transform

    Science.gov (United States)

    Windhari, Ayuty; Handayani, Gunawan

    2015-04-01

    The 3D inversion gravity anomaly to estimate topographical density using a matlab source code from gridded data provided by Parker Oldenburg algorithm based on fast Fourier transform was computed. We extend and improved the source code of 3DINVERT.M invented by Gomez Ortiz and Agarwal (2005) using the relationship between Fourier transform of the gravity anomaly and the sum of the Fourier transform from the topography density. We gave density contrast between the two media to apply the inversion. FFT routine was implemented to construct amplitude spectrum to the given mean depth. The results were presented as new graphics of inverted topography density, the gravity anomaly due to the inverted topography and the difference between the input gravity data and the computed ones. It terminates when the RMS error is lower than pre-assigned value used as convergence criterion or until maximum of iterations is reached. As an example, we used the matlab program on gravity data of Banten region, Indonesia.

  13. A Generalized Spatial Correlation Model for 3D MIMO Channels based on the Fourier Coefficients of Power Spectrums

    KAUST Repository

    Nadeem, Qurrat-Ul-Ain

    2015-05-07

    Previous studies have confirmed the adverse impact of fading correlation on the mutual information (MI) of two-dimensional (2D) multiple-input multiple-output (MIMO) systems. More recently, the trend is to enhance the system performance by exploiting the channel’s degrees of freedom in the elevation, which necessitates the derivation and characterization of three-dimensional (3D) channels in the presence of spatial correlation. In this paper, an exact closed-form expression for the Spatial Correlation Function (SCF) is derived for 3D MIMO channels. This novel SCF is developed for a uniform linear array of antennas with nonisotropic antenna patterns. The proposed method resorts to the spherical harmonic expansion (SHE) of plane waves and the trigonometric expansion of Legendre and associated Legendre polynomials. The resulting expression depends on the underlying arbitrary angular distributions and antenna patterns through the Fourier Series (FS) coefficients of power azimuth and elevation spectrums. The novelty of the proposed method lies in the SCF being valid for any 3D propagation environment. The developed SCF determines the covariance matrices at the transmitter and the receiver that form the Kronecker channel model. In order to quantify the effects of correlation on the system performance, the information-theoretic deterministic equivalents of the MI for the Kronecker model are utilized in both mono-user and multi-user cases. Numerical results validate the proposed analytical expressions and elucidate the dependence of the system performance on azimuth and elevation angular spreads and antenna patterns. Some useful insights into the behaviour of MI as a function of downtilt angles are provided. The derived model will help evaluate the performance of correlated 3D MIMO channels in the future.

  14. Fourier domain asymmetric cryptosystem for privacy protected multimodal biometric security

    Science.gov (United States)

    Choudhury, Debesh

    2016-04-01

    We propose a Fourier domain asymmetric cryptosystem for multimodal biometric security. One modality of biometrics (such as face) is used as the plaintext, which is encrypted by another modality of biometrics (such as fingerprint). A private key is synthesized from the encrypted biometric signature by complex spatial Fourier processing. The encrypted biometric signature is further encrypted by other biometric modalities, and the corresponding private keys are synthesized. The resulting biometric signature is privacy protected since the encryption keys are provided by the human, and hence those are private keys. Moreover, the decryption keys are synthesized using those private encryption keys. The encrypted signatures are decrypted using the synthesized private keys and inverse complex spatial Fourier processing. Computer simulations demonstrate the feasibility of the technique proposed.

  15. Image recovery from double amplitudes in fractional Fourier domain

    Institute of Scientific and Technical Information of China (English)

    Liao Tian-He; Gao Qiong

    2006-01-01

    The classical Gerchberg-Saxton algorithm is introduced into the image recovery in fractional Fourier domain after adaptation. When this algorithm is applied directly, its performance is good for smoothed image, but bad for unsmoothed image. Based on the diversity of fractional Fourier transform on its orders, this paper suggests a novel iterative algorithm, which extracts the information of the original image from amplitudes of its fractional Fourier transform at two orders. This new algorithm consists of two independent Gerchberg-Saxton procedures and an averaging operation in each circle. Numerical simulations are carried out to show its validity for both smoothed and unsmoothed images with most pairs of orders in the interval [0,1] .

  16. Optical parametric oscillators in isotropic photonic crystals and cavities: 3D time domain analysis

    OpenAIRE

    Conti, Claudio; Di Falco, Andrea; Assanto, Gaetano

    2004-01-01

    We investigate optical parametric oscillations through four-wave mixing in resonant cavities and photonic crystals. The theoretical analysis underlines the relevant features of the phenomenon and the role of the density of states. Using fully vectorial 3D time-domain simulations, including both dispersion and nonlinear polarization, for the first time we address this process in a face centered cubic lattice and in a photonic crystal slab. The results lead the way to the development of novel p...

  17. 3D time-domain airborne EM modeling for an arbitrarily anisotropic earth

    Science.gov (United States)

    Yin, Changchun; Qi, Yanfu; Liu, Yunhe

    2016-08-01

    Time-domain airborne EM data is currently interpreted based on an isotropic model. Sometimes, it can be problematic when working in the region with distinct dipping stratifications. In this paper, we simulate the 3D time-domain airborne EM responses over an arbitrarily anisotropic earth with topography by edge-based finite-element method. Tetrahedral meshes are used to describe the abnormal bodies with complicated shapes. We further adopt the Backward Euler scheme to discretize the time-domain diffusion equation for electric field, obtaining an unconditionally stable linear equations system. We verify the accuracy of our 3D algorithm by comparing with 1D solutions for an anisotropic half-space. Then, we switch attentions to effects of anisotropic media on the strengths and the diffusion patterns of time-domain airborne EM responses. For numerical experiments, we adopt three typical anisotropic models: 1) an anisotropic anomalous body embedded in an isotropic half-space; 2) an isotropic anomalous body embedded in an anisotropic half-space; 3) an anisotropic half-space with topography. The modeling results show that the electric anisotropy of the subsurface media has big effects on both the strengths and the distribution patterns of time-domain airborne EM responses; this effect needs to be taken into account when interpreting ATEM data in areas with distinct anisotropy.

  18. NUMERICAL SOLUTIONS OF PARABOLIC PROBLEMS ON UNBOUNDED 3-D SPATIAL DOMAIN

    Institute of Scientific and Technical Information of China (English)

    Hou-de Han; Dong-sheng Yin

    2005-01-01

    In this paper, the numerical solutions of heat equation on 3-D unbounded spatial domain are considered. An artificial boundary Γ is introduced to finite the computational domain. On the artificial boundary Γ, the exact boundary condition and a series of approximating boundary conditions are derived, which are called artificial boundary conditions.By the exact or approximating boundary condition on the artificial boundary, the original problem is reduced to an initial-boundary value problem on the bounded computational domain, which is equivalent or approximating to the original problem. The finite difference method and finite element method are used to solve the reduced problems on the finite computational domain. The numerical results demonstrate that the method given in this paper is effective and feasible.

  19. Fractional Fourier domain analysis of decimation and interpolation

    Institute of Scientific and Technical Information of China (English)

    MENG XiangYi; TAO Ran; WANG Yue

    2007-01-01

    The sampling rate conversion is always used in order to decrease computational amount and storage load in a system. The fractional Fourier transform (FRFT) is a powerful tool for the analysis of nonstationary signals, especially, chirp-like signal.Thus, it has become an active area in the signal processing community, with many applications of radar, communication, electronic warfare, and information security.Therefore, it is necessary for us to generalize the theorem for Fourier domain analysis of decimation and interpolation. Firstly, this paper defines the digital frequency in the fractional Fourier domain (FRFD) through the sampling theorems with FRFT. Secondly, FRFD analysis of decimation and interpolation is proposed in this paper with digital frequency in FRFD followed by the studies of interpolation filter and decimation filter in FRFD. Using these results, FRFD analysis of the sampling rate conversion by a rational factor is illustrated. The noble identities of decimation and interpolation in FRFD are then deduced using previous results and the fractional convolution theorem. The proposed theorems in this study are the bases for the generalizations of the multirate signal processing in FRFD, which can advance the filter banks theorems in FRFD. Finally, the theorems introduced in this paper are validated by simulations.

  20. 3D time-domain regular grid infinite element in elastic foundation

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    The normal dynamic infinite element in elastic foundation cannot be used in time-domain due to it’s inclusive frequency term.A novel 3D regular grid infinite element is constructed to deal with the time-domain problem.This new infinite element method can easily transform the frequency terms of mass matrix and stiffness matrix to the terms in higher-order dynamic equation,thus a higher-order dynamic equilibrium equation is formed.Based on the second-order Wilson-θ dynamic equation,a new time-domain numeric formula of higher-order dynamic equation is deduced,and the time-domain calculation coupling with finite element and infinite element can be realized.The classic 3D fluctuation problem in elastic foundation is employed as an illustrative example to investigate the accuracy and validity of this new infinite element.The result indicates that the new dynamic infinite element has a high accuracy.

  1. Hydrodynamic interactions between two bodies in waves in 3D time domain

    Institute of Scientific and Technical Information of China (English)

    WANG Jian-fang; LI Ji-de; CAI Xin-gong; TIAN Ming-qi; Hao Jin-feng

    2005-01-01

    In this paper, a 3D time domain technique is adopted to calculate the coupled hydrodynamic interaction between two bodies without flare in waves. For verifying the code, two same cylinders are selected to calculate coupled hydrodynamic effects by comparison with the results obtained by 3D frequency method which has been proved to be efficient for solving such problems. In order to improve efficiency of calculation, the effect of history time has been discussed, and an improved method is presented. Moreover, the effect of lateral separation distance is also discussed in detail. The technique developed here may serve as a more rigorous tool to analyze the related transient problems of two ships doing underway replenishment in waves.

  2. Fourier domain multispectral multiple scattering low coherence interferometry.

    Science.gov (United States)

    Matthews, Thomas E; Giacomelli, Michael G; Brown, William J; Wax, Adam

    2013-12-01

    We have implemented multispectral multiple scattering low coherence interferometry (ms2/LCI) with Fourier domain data collection. The ms2/LCI system is designed to localize features with spectroscopic contrast with millimeter resolution up to 1 cm deep in scattering samples by using photons that have undergone multiple low-angle (forward) scattering events. Fourier domain detection both increases the data acquisition speed of the system and gives access to rich spectroscopic information, compared to the previous single channel, time-domain implementation. Separate delivery and detection angular apertures reduce collection of the diffuse background signal in order to isolate localized spectral features from deeper in scattering samples than would be possible with traditional spectroscopic optical coherence tomography. Light from a supercontinuum source is used to acquire absorption spectra of chromophores in the visible range within a tissue-like scattering phantom. An intensity modulation and digital lock-in detection scheme is implemented to mitigate relative intensity and spectral noise inherent in supercontinuum sources. The technical parameters of the system and comparative analysis are presented.

  3. Fourier-domain multichannel autofocus for synthetic aperture radar.

    Science.gov (United States)

    Liu, Kuang-Hung; Munson, David C

    2011-12-01

    Synthetic aperture radar (SAR) imaging suffers from image focus degradation in the presence of phase errors in the received signal due to unknown platform motion or signal propagation delays. We present a new autofocus algorithm, termed Fourier-domain multichannel autofocus (FMCA), that is derived under a linear algebraic framework, allowing the SAR image to be focused in a noniterative fashion. Motivated by the mutichannel autofocus (MCA) approach, the proposed autofocus algorithm invokes the assumption of a low-return region, which generally is provided within the antenna sidelobes. Unlike MCA, FMCA works with the collected polar Fourier data directly and is capable of accommodating wide-angle monostatic SAR and bistatic SAR scenarios. Most previous SAR autofocus algorithms rely on the prior assumption that radar's range of look angles is small so that the phase errors can be modeled as varying along only one dimension in the collected Fourier data. And, in some cases, implicit assumptions are made regarding the SAR scene. Performance of such autofocus algorithms degrades if the assumptions are not satisfied. The proposed algorithm has the advantage that it does not require prior assumptions about the range of look angles, nor characteristics of the scene.

  4. Resonant Doppler imaging with Fourier domain optical coherence tomography

    Science.gov (United States)

    Leitgeb, Rainer A.; Szklumowska, Anna; Pircher, Michael; Gotzinger, Erich; Fercher, Adolf F.

    2005-04-01

    Fourier Domain Optical Coherene Tomography (FD OCT) is a high speed imaging modality with increased sensitivity as compared to standard time domain (TD) OCT. The higher sensitivity is especially important, if strongly scattering tissue such as blood is investigated. Recently it could be shown that retinal blood flow can be assessed in-vivo by high speed FD OCT. However the detection bandwidth of color Doppler (CD) FDOCT is strongly limited due to blurring of the detected interference fringes during exposure. This leads to a loss of sensitivity for detection of fast changes in tissue. Using a moving mirror as a reference one can effectively increase the detection bandwidth for CD FDOCT and perform perfusion sectioning. The modality is called resonant CD FDOCT imaging. The principle of the method is presented and experimentally verified.

  5. Fourier Phase Domain Steganography: Phase Bin Encoding Via Interpolation

    Science.gov (United States)

    Rivas, Edward

    2007-04-01

    In recent years there has been an increased interest in audio steganography and watermarking. This is due primarily to two reasons. First, an acute need to improve our national security capabilities in light of terrorist and criminal activity has driven new ideas and experimentation. Secondly, the explosive proliferation of digital media has forced the music industry to rethink how they will protect their intellectual property. Various techniques have been implemented but the phase domain remains a fertile ground for improvement due to the relative robustness to many types of distortion and immunity to the Human Auditory System. A new method for embedding data in the phase domain of the Discrete Fourier Transform of an audio signal is proposed. Focus is given to robustness and low perceptibility, while maintaining a relatively high capacity rate of up to 172 bits/s.

  6. Second-Order Wave Diffraction Around 3-D Bodies by A Time-Domain Method

    Institute of Scientific and Technical Information of China (English)

    柏威; 滕斌

    2001-01-01

    A time-domain method is applied to simulate nonlinear wave diffraction around a surface piercing 3-D arbitrary body. The method involves the application of Taylor series expansions and the use of perturbation procedure to establish the corresponding boundary value problems with respect to a time-independent fluid domain. A boundary element method based on B-spline expansion is used to calculate the wave field at each time step, and the free surface boundary condition is satisfied to the second order of wave steepness by a numerical integration in time. An artificial damping layer is adopted on the free surface for the removal of wave reflection from the outer boundary. As an illustration, the method is used to compute the second-order wave forces and run-up on a surface-piercing circular cylinder. The present method is found to be accurate, computationally efficient, and numerically stable.

  7. Fractional Fourier domain analysis of cyclic multirate signal processing

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The cyclic filter banks, which are used widely in the image subband coding, refer to signal processing on the finite field. This study investigates the fractional Fourier domain (FRFD) analysis of cyclic multirate systems based on the fractional circular convolution and chirp period. The proposed theorems include the fractional Fourier domain analysis of cyclic decimation and cyclic interpolation, the noble identities of cyclic decimation and cyclic interpolation in the FRFD, the polyphase represen-tation of cyclic signal in the FRFD, and the perfect reconstruction condition for the cyclic filter banks in the FRFD. Furthermore, this paper proposes the design methods for perfect reconstruction cyclic filter bank and cyclic filter bank with chirp modulation in the FRFD. The proposed theorems extend the multirate signal processing in the FRFD, which also advance the applications of the theorems of filter bank in the FRFD on the finite signal field, such as digital image processing. At last, the proposed design methods for the cyclic filter banks in the FRFD are validated by simulations.

  8. 3D time-domain airborne EM forward modeling with topography

    Science.gov (United States)

    Yin, Changchun; Qi, Yanfu; Liu, Yunhe; Cai, Jing

    2016-11-01

    The time-domain finite-difference method has been widely used in simulation of the electromagnetic field diffusion. However, this method is severely restricted by the mesh size and time step. To overcome the defect, we adopted edge finite-element method for unstructured grid with Backward Euler method to conduct 3D airborne electromagnetic forward modeling directly in time-domain. The tetrahedral meshes provide the flexibility required for representing the rugged topography and complex-shape anomalous bodies. We simulated the practical shape, size and attitude of transmitting source by directly setting the loop into the well-generated grids. The characteristic properties of vector basic functions guarantee automatic satisfaction of divergence-free property of electric fields. The Galerkin's method is used to discretize the governing equations and a direct solver is adopted to solve the large sparse linear system. We adopted an algorithm with constant step in each time segment to speed up the forward modeling. Further we introduced the local mesh strategy to reduce the calculations, in which an optimized grid is designed for each sounding station. We check the accuracy of our 3D modeling results against the solution for a homogenous half-space and those for a buried vertical plate model using integral equation. The numerical experiments for a hill, a valley or undulating topography model with buried anomalous bodies were further studied that show that the topography has a serious effect on airborne EM data.

  9. Efficient 2D and 3D multiparameters frequency-domain full waveform inversion (Invited)

    Science.gov (United States)

    Virieux, J.; Operto, S.; Ribodetti, A.; Ben Hadj Ali, H.; Brossier, R.; Etienne, V.; Gholami, Y.; Hu, G.; Jia, Y.; Pageot, D.; Prieux, V.

    2010-12-01

    With the tremendous increase of the computational power provided by large-scale distributed-memory platforms and the development of dense 3D multi-component wide-aperture/wide-azimuth surveys, full waveform inversion (FWI) introduced in geophysics by Albert Tarantola has become a re-emerging technique to build high-resolution velocity models of the subsurface. Because of the cost of the forward modeling and the high dimensionality of the model space, full waveform inversion is actually a local optimization problem, the aim of which is the minimization of the misfit between the recorded and modeled seismic wavefields. Among all possible minimization criteria, the L1 norm provides the most robust and easy-to-tune criterion. With such criterion, white noise in all seismograms with outliers does not prevent the convergence to the nearly same minimum as for noise-free data. The frequency formulation of the FWI allows coarse sampling of the frequencies data over few frequencies for the reconstruction of the medium when wide-aperture geometries are considered. A preconditioned quasi-Newton L-BFGS modified algorithm provides scaled gradients of the misfit function for each class of parameters. The gradient is computed by the adjoint-state method where the forward field is stored in the core memory of the computer while computing the backpropagation of residuals for cross-correlation at each point of the medium, thanks to the frequency-domain approach. We are using a sequential multiscale hierarchical inversion algorithm with two nested levels of data preconditioning with respect to frequency and first-arrival time. We are able to reconstruct both Vp and Vs velocity structures in various offshore and onshore environments various configurations of crustal investigation where both body waves (and surface) waves are progressively included in the inversion scheme. Solving the forward problem for 2D geometry could be efficiently performed in frequency by using a direct solver

  10. Direct observation of current-induced motion of a 3D vortex domain wall in cylindrical nanowires

    KAUST Repository

    Ivanov, Yurii P.

    2017-05-08

    The current-induced dynamics of 3D magnetic vortex domain walls in cylindrical Co/Ni nanowires are revealed experimentally using Lorentz microscopy and theoretically using micromagnetic simulations. We demonstrate that a spin-polarized electric current can control the reversible motion of 3D vortex domain walls, which travel with a velocity of a few hundred meters per second. This finding is a key step in establishing fast, high-density memory devices based on vertical arrays of cylindrical magnetic nanowires.

  11. Determination and validation of mTOR kinase-domain 3D structure by homology modeling

    Directory of Open Access Journals (Sweden)

    Lakhlili W

    2015-07-01

    Full Text Available Wiame Lakhlili,1 Gwénaël Chevé,2 Abdelaziz Yasri,2 Azeddine Ibrahimi1 1Laboratoire de Biotechnologie (MedBiotech, Faculté de Médecine et de Pharmacie de Rabat, Université Mohammed V de Rabat, Rabat, Morroco; 2OriBase Pharma, Cap Gamma, Parc Euromédecine, Montpellier, France Abstract: The AKT/mammalian target of rapamycin (mTOR pathway is considered as one of the commonly activated and deregulated signaling pathways in human cancer. mTOR is associated with other proteins in two molecular complexes: mTOR complex 1/Raptor and the mTOR complex 2/Rictor. Using the crystal structure of the related lipid kinase PI3Kγ, we built a model of the catalytic region of mTOR. The modeling of the three-dimensional (3D structure of the mTOR was performed by homology modeling program SWISS-MODEL. The quality and validation of the obtained model were performed using PROCHECK and PROVE softwares. The overall stereochemical property of the protein was assessed by the Ramachandran plot. The model validation was also done by docking of known inhibitors. In this paper, we describe and validate a 3D model for the mTOR catalytic site.Keywords: mTOR, homology modeling, mTOR kinase-domain, docking

  12. Robust and Blind 3D Mesh Watermarking in Spatial Domain Based on Faces Categorization and Sorting

    Science.gov (United States)

    Molaei, Amir Masoud; Ebrahimnezhad, Hossein; Sedaaghi, Mohammad Hossein

    2016-06-01

    In this paper, a 3D watermarking algorithm in spatial domain is presented with blind detection. In the proposed method, a negligible visual distortion is observed in host model. Initially, a preprocessing is applied on the 3D model to make it robust against geometric transformation attacks. Then, a number of triangle faces are determined as mark triangles using a novel systematic approach in which faces are categorized and sorted robustly. In order to enhance the capability of information retrieval by attacks, block watermarks are encoded using Reed-Solomon block error-correcting code before embedding into the mark triangles. Next, the encoded watermarks are embedded in spherical coordinates. The proposed method is robust against additive noise, mesh smoothing and quantization attacks. Also, it is stout next to geometric transformation, vertices and faces reordering attacks. Moreover, the proposed algorithm is designed so that it is robust against the cropping attack. Simulation results confirm that the watermarked models confront very low distortion if the control parameters are selected properly. Comparison with other methods demonstrates that the proposed method has good performance against the mesh smoothing attacks.

  13. Radiative transfer with scattering for domain-decomposed 3D MHD simulations of cool stellar atmospheres

    CERN Document Server

    Hayek, W; Carlsson, M; Trampedach, R; Collet, R; Gudiksen, B V; Hansteen, V H; Leenaarts, J

    2010-01-01

    We present the implementation of a radiative transfer solver with coherent scattering in the new BIFROST code for radiative magneto-hydrodynamical (MHD) simulations of stellar surface convection. The code is fully parallelized using MPI domain decomposition, which allows for large grid sizes and improved resolution of hydrodynamical structures. We apply the code to simulate the surface granulation in a solar-type star, ignoring magnetic fields, and investigate the importance of coherent scattering for the atmospheric structure. A scattering term is added to the radiative transfer equation, requiring an iterative computation of the radiation field. We use a short-characteristics-based Gauss-Seidel acceleration scheme to compute radiative flux divergences for the energy equation. The effects of coherent scattering are tested by comparing the temperature stratification of three 3D time-dependent hydrodynamical atmosphere models of a solar-type star: without scattering, with continuum scattering only, and with bo...

  14. 3D Mapping of the SPRY2 domain of ryanodine receptor 1 by single-particle cryo-EM.

    Directory of Open Access Journals (Sweden)

    Alex Perálvarez-Marín

    Full Text Available The type 1 skeletal muscle ryanodine receptor (RyR1 is principally responsible for Ca(2+ release from the sarcoplasmic reticulum and for the subsequent muscle contraction. The RyR1 contains three SPRY domains. SPRY domains are generally known to mediate protein-protein interactions, however the location of the three SPRY domains in the 3D structure of the RyR1 is not known. Combining immunolabeling and single-particle cryo-electron microscopy we have mapped the SPRY2 domain (S1085-V1208 in the 3D structure of RyR1 using three different antibodies against the SPRY2 domain. Two obstacles for the image processing procedure; limited amount of data and signal dilution introduced by the multiple orientations of the antibody bound in the tetrameric RyR1, were overcome by modifying the 3D reconstruction scheme. This approach enabled us to ascertain that the three antibodies bind to the same region, to obtain a 3D reconstruction of RyR1 with the antibody bound, and to map SPRY2 to the periphery of the cytoplasmic domain of RyR1. We report here the first 3D localization of a SPRY2 domain in any known RyR isoform.

  15. Seamless Heterogeneous 3D Tessellation via DWT Domain Smoothing and Mosaicking

    Directory of Open Access Journals (Sweden)

    Puech William

    2010-01-01

    Full Text Available With todays geobrowsers, the tessellations are far from being smooth due to a variety of reasons: the principal being the light difference and resolution heterogeneity. Whilst the former has been extensively dealt with in the literature through classic mosaicking techniques, the latter has got little attention. We focus on this latter aspect and present two DWT domain methods to seamlessly stitch tiles of heterogeneous resolutions. The first method is local in that each of the tiles that constitute the view, is subjected to one of the three context-based smoothing functions proposed for horizontal, vertical, and radial smoothing, depending on its localization in the tessellation. These functions are applied at the DWT subband level and followed by an inverse DWT to give a smoothened tile. In the second method, though we assume the same tessellation scenario, the view field is thought to be of a sliding window which may contain parts of the tiles from the heterogeneous tessellation. The window is refined in the DWT domain through mosaicking and smoothing followed by a global inverse DWT. Rather than the traditional sense, the mosaicking employed over here targets the heterogeneous resolution. Perceptually, this second method has shown better results than the first one. The methods have been successfully applied to practical examples of both the texture and its corresponding DEM for seamless 3D terrain visualization.

  16. INFFTM: Fast evaluation of 3d Fourier series in MATLAB with an application to quantum vortex reconnections

    Science.gov (United States)

    Caliari, Marco; Zuccher, Simone

    2017-04-01

    Although Fourier series approximation is ubiquitous in computational physics owing to the Fast Fourier Transform (FFT) algorithm, efficient techniques for the fast evaluation of a three-dimensional truncated Fourier series at a set of arbitrary points are quite rare, especially in MATLAB language. Here we employ the Nonequispaced Fast Fourier Transform (NFFT, by J. Keiner, S. Kunis, and D. Potts), a C library designed for this purpose, and provide a Matlab® and GNU Octave interface that makes NFFT easily available to the Numerical Analysis community. We test the effectiveness of our package in the framework of quantum vortex reconnections, where pseudospectral Fourier methods are commonly used and local high resolution is required in the post-processing stage. We show that the efficient evaluation of a truncated Fourier series at arbitrary points provides excellent results at a computational cost much smaller than carrying out a numerical simulation of the problem on a sufficiently fine regular grid that can reproduce comparable details of the reconnecting vortices.

  17. Papoulis-like generalized sampling expansions in fractional Fourier domains and their application to superresolution

    Science.gov (United States)

    Sharma, Kamalesh Kumar; Joshi, Shiv Dutt

    2007-10-01

    We present a generalized convolution theorem in the fractional Fourier domains that preserves the convolution theorem of the conventional Fourier transform. The Papoulis-like generalized sampling expansions in the fractional Fourier domains using this generalized convolution theorem are also derived and it is shown that the classical generalized Papoulis sampling expansion is a special case of it. Its application in the context of the image superresolution is also discussed.

  18. Spatial Carrier Bi-frequency Fourier Transform Profilometry for the 3-D Shape Measurement of Object with Discontinuous Height Steps

    Institute of Scientific and Technical Information of China (English)

    ZHONG Jingang; DI Hongwei; ZHANG Yonglin

    2000-01-01

    The combination of shearing interferometer, Fourier-transform profilometry, phase unwrapping by lookup table method has resulted in a new and more powerful method of measuring surface profile. The technique permits the three-dimensional shape measurement of objects that have discontinuous height steps. Experimental results have demonstrated the validity of the principle.

  19. Limited cross-reactivity among domains of the Plasmodium falciparum clone 3D7 erythrocyte membrane protein 1 family

    DEFF Research Database (Denmark)

    Joergensen, Louise; Turner, Louise; Magistrado, Pamela

    2006-01-01

    The var gene-encoded Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) family is responsible for antigenic variation and sequestration of infected erythrocytes during malaria. We have previously grouped the 60 PfEMP1 variants of P. falciparum clone 3D7 into groups A and B/A (category A...... from clone 3D7 by using a competition enzyme-linked immunosorbent assay and a pool of plasma from 63 malaria-exposed Tanzanian individuals. We conclude that naturally acquired antibodies are largely directed toward epitopes varying between different domains with a few, mainly category A, domains...

  20. Microvascular anastomosis in rodent model evaluated by Fourier domain Doppler optical coherence tomography

    Science.gov (United States)

    Huang, Yong; Tong, Dedi; Zhu, Shan; Wu, Lehao; Ibrahim, Zuhaib; Lee, WP Andrew; Brandacher, Gerald; Kang, Jin U.

    2014-03-01

    Vascular and microvascular anastomosis are critical components of reconstructive microsurgery, vascular surgery and transplant surgery. Imaging modality that provides immediate, real-time in-depth view and 3D structure and flow information of the surgical site can be a great valuable tool for the surgeon to evaluate surgical outcome following both conventional and innovative anastomosis techniques, thus potentially increase the surgical success rate. Microvascular anastomosis for vessels with outer diameter smaller than 1.0 mm is extremely challenging and effective evaluation of the outcome is very difficult if not impossible using computed tomography (CT) angiograms, magnetic resonance (MR) angiograms and ultrasound Doppler. Optical coherence tomography (OCT) is a non-invasive high-resolution (micron level), high-speed, 3D imaging modality that has been adopted widely in biomedical and clinical applications. Phaseresolved Doppler OCT that explores the phase information of OCT signals has been shown to be capable of characterizing dynamic blood flow clinically. In this work, we explore the capability of Fourier domain Doppler OCT as an evaluation tool to detect commonly encountered post-operative complications that will cause surgical failure and to confirm positive result with surgeon's observation. Both suture and cuff based techniques were evaluated on the femoral artery and vein in the rodent model.

  1. Filterbank implementation for multi-channel sampling in fractional Fourier domain

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Reconstruction of a continuous time signal from its periodic nonuniform samples and multi-channel samples is fundamental for multi-channel parallel A/D and MIMO systems. In this paper,with a filterbank interpretation of sampling schemes,the efficient interpolation and reconstruction methods for periodic nonuniform sampling and multi-channel sampling in the fractional Fourier domain are presented. Firstly,the interpolation and sampling identities in the fractional Fourier domain are derived by the properties of the fractional Fourier transform. Then,the particularly efficient filterbank implementations for the periodic nonuniform sampling and the multi-channel sampling in the fractional Fourier domain are introduced. At last,the relationship between the multi-channel sampling and the filterbank in the fractional Fourier domain is investigated,which shows that any perfect reconstruction filterbank can lead to new sampling and reconstruction strategies.

  2. Filterbank implementation for multi-channel sampling in fractional Fourier domain

    Institute of Scientific and Technical Information of China (English)

    ZHANG Feng; TAO Ran; WANG Yue

    2009-01-01

    Reconstruction of a continuous time signal from its periodic nonuniform samples and multi-channel samples is fundamental for multi-channel parallel A/D and MIMO systems. In this paper, with a filter-bank interpretation of sampling schemes, the efficient interpolation and reconstruction methods for periodic nonuniform sampling and multi-channel sampling in the fractional Fourier domain are pre-sented. Firstly, the interpolation and sampling identities in the fractional Fourier domain are derived by the properties of the fractional Fourier transform. Then, the particularly efficient filterbank implementa-tions for the periodic nonuniform sampling and the multi-channel sampling in the fractional Fourier domain are introduced. At last, the relationship between the multi-channel sampling and the filterbank in the fractional Fourier domain is investigated, which shows that any perfect reconstruction filterbank can lead to new sampling and reconstruction strategies.

  3. 3-D segmentation of retinal blood vessels in spectral-domain OCT volumes of the optic nerve head

    Science.gov (United States)

    Lee, Kyungmoo; Abràmoff, Michael D.; Niemeijer, Meindert; Garvin, Mona K.; Sonka, Milan

    2010-03-01

    Segmentation of retinal blood vessels can provide important information for detecting and tracking retinal vascular diseases including diabetic retinopathy, arterial hypertension, arteriosclerosis and retinopathy of prematurity (ROP). Many studies on 2-D segmentation of retinal blood vessels from a variety of medical images have been performed. However, 3-D segmentation of retinal blood vessels from spectral-domain optical coherence tomography (OCT) volumes, which is capable of providing geometrically accurate vessel models, to the best of our knowledge, has not been previously studied. The purpose of this study is to develop and evaluate a method that can automatically detect 3-D retinal blood vessels from spectral-domain OCT scans centered on the optic nerve head (ONH). The proposed method utilized a fast multiscale 3-D graph search to segment retinal surfaces as well as a triangular mesh-based 3-D graph search to detect retinal blood vessels. An experiment on 30 ONH-centered OCT scans (15 right eye scans and 15 left eye scans) from 15 subjects was performed, and the mean unsigned error in 3-D of the computer segmentations compared with the independent standard obtained from a retinal specialist was 3.4 +/- 2.5 voxels (0.10 +/- 0.07 mm).

  4. Accurate characterization of 3D diffraction gratings using time domain discontinuous Galerkin method with exact absorbing boundary conditions

    KAUST Repository

    Sirenko, Kostyantyn

    2013-07-01

    Exact absorbing and periodic boundary conditions allow to truncate grating problems\\' infinite physical domains without introducing any errors. This work presents exact absorbing boundary conditions for 3D diffraction gratings and describes their discretization within a high-order time-domain discontinuous Galerkin finite element method (TD-DG-FEM). The error introduced by the boundary condition discretization matches that of the TD-DG-FEM; this results in an optimal solver in terms of accuracy and computation time. Numerical results demonstrate the superiority of this solver over TD-DG-FEM with perfectly matched layers (PML)-based domain truncation. © 2013 IEEE.

  5. Reconstruction for time-domain in vivo EPR 3D multigradient oximetric imaging--a parallel processing perspective.

    Science.gov (United States)

    Dharmaraj, Christopher D; Thadikonda, Kishan; Fletcher, Anthony R; Doan, Phuc N; Devasahayam, Nallathamby; Matsumoto, Shingo; Johnson, Calvin A; Cook, John A; Mitchell, James B; Subramanian, Sankaran; Krishna, Murali C

    2009-01-01

    Three-dimensional Oximetric Electron Paramagnetic Resonance Imaging using the Single Point Imaging modality generates unpaired spin density and oxygen images that can readily distinguish between normal and tumor tissues in small animals. It is also possible with fast imaging to track the changes in tissue oxygenation in response to the oxygen content in the breathing air. However, this involves dealing with gigabytes of data for each 3D oximetric imaging experiment involving digital band pass filtering and background noise subtraction, followed by 3D Fourier reconstruction. This process is rather slow in a conventional uniprocessor system. This paper presents a parallelization framework using OpenMP runtime support and parallel MATLAB to execute such computationally intensive programs. The Intel compiler is used to develop a parallel C++ code based on OpenMP. The code is executed on four Dual-Core AMD Opteron shared memory processors, to reduce the computational burden of the filtration task significantly. The results show that the parallel code for filtration has achieved a speed up factor of 46.66 as against the equivalent serial MATLAB code. In addition, a parallel MATLAB code has been developed to perform 3D Fourier reconstruction. Speedup factors of 4.57 and 4.25 have been achieved during the reconstruction process and oximetry computation, for a data set with 23 x 23 x 23 gradient steps. The execution time has been computed for both the serial and parallel implementations using different dimensions of the data and presented for comparison. The reported system has been designed to be easily accessible even from low-cost personal computers through local internet (NIHnet). The experimental results demonstrate that the parallel computing provides a source of high computational power to obtain biophysical parameters from 3D EPR oximetric imaging, almost in real-time.

  6. Reconstruction for Time-Domain In Vivo EPR 3D Multigradient Oximetric Imaging—A Parallel Processing Perspective

    Directory of Open Access Journals (Sweden)

    Christopher D. Dharmaraj

    2009-01-01

    Full Text Available Three-dimensional Oximetric Electron Paramagnetic Resonance Imaging using the Single Point Imaging modality generates unpaired spin density and oxygen images that can readily distinguish between normal and tumor tissues in small animals. It is also possible with fast imaging to track the changes in tissue oxygenation in response to the oxygen content in the breathing air. However, this involves dealing with gigabytes of data for each 3D oximetric imaging experiment involving digital band pass filtering and background noise subtraction, followed by 3D Fourier reconstruction. This process is rather slow in a conventional uniprocessor system. This paper presents a parallelization framework using OpenMP runtime support and parallel MATLAB to execute such computationally intensive programs. The Intel compiler is used to develop a parallel C++ code based on OpenMP. The code is executed on four Dual-Core AMD Opteron shared memory processors, to reduce the computational burden of the filtration task significantly. The results show that the parallel code for filtration has achieved a speed up factor of 46.66 as against the equivalent serial MATLAB code. In addition, a parallel MATLAB code has been developed to perform 3D Fourier reconstruction. Speedup factors of 4.57 and 4.25 have been achieved during the reconstruction process and oximetry computation, for a data set with 23×23×23 gradient steps. The execution time has been computed for both the serial and parallel implementations using different dimensions of the data and presented for comparison. The reported system has been designed to be easily accessible even from low-cost personal computers through local internet (NIHnet. The experimental results demonstrate that the parallel computing provides a source of high computational power to obtain biophysical parameters from 3D EPR oximetric imaging, almost in real-time.

  7. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors.

    Science.gov (United States)

    Li, Xueming; Grigorieff, Nikolaus; Cheng, Yifan

    2010-12-01

    Among all the factors that determine the resolution of a 3D reconstruction by single particle electron cryo-microscopy (cryoEM), the number of particle images used in the dataset plays a major role. More images generally yield better resolution, assuming the imaged protein complex is conformationally and compositionally homogeneous. To facilitate processing of very large datasets, we modified the computer program, FREALIGN, to execute the computationally most intensive procedures on Graphics Processing Units (GPUs). Using the modified program, the execution speed increased between 10 and 240-fold depending on the task performed by FREALIGN. Here we report the steps necessary to parallelize critical FREALIGN subroutines and evaluate its performance on computers with multiple GPUs.

  8. Regularized Laplace-Fourier-Domain Full Waveform Inversion Using a Weighted l 2 Objective Function

    Science.gov (United States)

    Jun, Hyunggu; Kwon, Jungmin; Shin, Changsoo; Zhou, Hongbo; Cogan, Mike

    2016-09-01

    Full waveform inversion (FWI) can be applied to obtain an accurate velocity model that contains important geophysical and geological information. FWI suffers from the local minimum problem when the starting model is not sufficiently close to the true model. Therefore, an accurate macroscale velocity model is essential for successful FWI, and Laplace-Fourier-domain FWI is appropriate for obtaining such a velocity model. However, conventional Laplace-Fourier-domain FWI remains an ill-posed and ill-conditioned problem, meaning that small errors in the data can result in large differences in the inverted model. This approach also suffers from certain limitations related to the logarithmic objective function. To overcome the limitations of conventional Laplace-Fourier-domain FWI, we introduce a weighted l 2 objective function, instead of the logarithmic objective function, as the data-domain objective function, and we also introduce two different model-domain regularizations: first-order Tikhonov regularization and prior model regularization. The weighting matrix for the data-domain objective function is constructed to suitably enhance the far-offset information. Tikhonov regularization smoothes the gradient, and prior model regularization allows reliable prior information to be taken into account. Two hyperparameters are obtained through trial and error and used to control the trade-off and achieve an appropriate balance between the data-domain and model-domain gradients. The application of the proposed regularizations facilitates finding a unique solution via FWI, and the weighted l 2 objective function ensures a more reasonable residual, thereby improving the stability of the gradient calculation. Numerical tests performed using the Marmousi synthetic dataset show that the use of the weighted l 2 objective function and the model-domain regularizations significantly improves the Laplace-Fourier-domain FWI. Because the Laplace-Fourier-domain FWI is improved, the

  9. Regularized Laplace-Fourier-Domain Full Waveform Inversion Using a Weighted l 2 Objective Function

    Science.gov (United States)

    Jun, Hyunggu; Kwon, Jungmin; Shin, Changsoo; Zhou, Hongbo; Cogan, Mike

    2017-03-01

    Full waveform inversion (FWI) can be applied to obtain an accurate velocity model that contains important geophysical and geological information. FWI suffers from the local minimum problem when the starting model is not sufficiently close to the true model. Therefore, an accurate macroscale velocity model is essential for successful FWI, and Laplace-Fourier-domain FWI is appropriate for obtaining such a velocity model. However, conventional Laplace-Fourier-domain FWI remains an ill-posed and ill-conditioned problem, meaning that small errors in the data can result in large differences in the inverted model. This approach also suffers from certain limitations related to the logarithmic objective function. To overcome the limitations of conventional Laplace-Fourier-domain FWI, we introduce a weighted l 2 objective function, instead of the logarithmic objective function, as the data-domain objective function, and we also introduce two different model-domain regularizations: first-order Tikhonov regularization and prior model regularization. The weighting matrix for the data-domain objective function is constructed to suitably enhance the far-offset information. Tikhonov regularization smoothes the gradient, and prior model regularization allows reliable prior information to be taken into account. Two hyperparameters are obtained through trial and error and used to control the trade-off and achieve an appropriate balance between the data-domain and model-domain gradients. The application of the proposed regularizations facilitates finding a unique solution via FWI, and the weighted l 2 objective function ensures a more reasonable residual, thereby improving the stability of the gradient calculation. Numerical tests performed using the Marmousi synthetic dataset show that the use of the weighted l 2 objective function and the model-domain regularizations significantly improves the Laplace-Fourier-domain FWI. Because the Laplace-Fourier-domain FWI is improved, the

  10. Numerical dispersion, stability, and phase-speed for 3D time-domain finite-difference seismic wave propagation algorithms

    Science.gov (United States)

    Haney, M. M.; Aldridge, D. F.; Symons, N. P.

    2005-12-01

    Numerical solution of partial differential equations by explicit, time-domain, finite-difference (FD) methods entails approximating temporal and spatial derivatives by discrete function differences. Thus, the solution of the difference equation will not be identical to the solution of the underlying differential equation. Solution accuracy degrades if temporal and spatial gridding intervals are too large. Overly coarse spatial gridding leads to spurious artifacts in the calculated results referred to as numerical dispersion, whereas coarse temporal sampling may produce numerical instability (manifest as unbounded growth in the calculations as FD timestepping proceeds). Quantitative conditions for minimizing dispersion and avoiding instability are developed by deriving the dispersion relation appropriate for the discrete difference equation (or coupled system of difference equations) under examination. A dispersion relation appropriate for FD solution of the 3D velocity-stress system of isotropic elastodynamics, on staggered temporal and spatial grids, is developed. The relation applies to either compressional or shear wave propagation, and reduces to the proper form for acoustic propagation in the limit of vanishing shear modulus. A stability condition and a plane-wave phase-speed formula follow as consequences of the dispersion relation. The mathematical procedure utilized for the derivation is a modern variant of classical von Neumann analysis, and involves a 4D discrete space/time Fourier transform of the nine, coupled, FD updating formulae for particle velocity vector and stress tensor components. The method is generalized to seismic wave propagation within anelastic and poroelastic media, as well as sound wave propagation within a uniformly-moving atmosphere. A significant extension of the approach yields a stability condition for wave propagation across an interface between dissimilar media with strong material contrast (e.g., the earth's surface, the seabed

  11. Time-Domain Optical Fourier Transformation for OTDM-DWDM and DWDM-OTDM Conversion

    DEFF Research Database (Denmark)

    Mulvad, Hans Christian Hansen; Palushani, Evarist; Galili, Michael

    2011-01-01

    Applications of time-domain optical Fourier transformation (OFT) in ultra-high-speed optical time-division multiplexed systems (OTDM) are reviewed, with emphasis on the recent demonstrations of OFT-based conversion between the OTDM and DWDM formats.......Applications of time-domain optical Fourier transformation (OFT) in ultra-high-speed optical time-division multiplexed systems (OTDM) are reviewed, with emphasis on the recent demonstrations of OFT-based conversion between the OTDM and DWDM formats....

  12. Broadband photonic microwave phase shifter based on controlling two RF modulation sidebands via a Fourier-domain optical processor.

    Science.gov (United States)

    Yang, J; Chan, E H W; Wang, X; Feng, X; Guan, B

    2015-05-04

    An all-optical photonic microwave phase shifter that can realize a continuous 360° phase shift over a wide frequency range is presented. It is based on the new concept of controlling the amplitude and phase of the two RF modulation sidebands via a Fourier-domain optical processor. The operating frequency range of the phase shifter is largely increased compared to the previously reported Fourier-domain optical processor based phase shifter that uses only one RF modulation sideband. This is due to the extension of the lower RF operating frequency by designing the amplitude and phase of one of the RF modulation sidebands while the other sideband is designed to realize the required RF signal phase shift. The two-sideband amplitude-and-phase-control based photonic microwave phase shifter has a simple structure as it only requires a single laser source, a phase modulator, a Fourier-domain optical processor and a single photodetector. Investigation on the bandwidth limitation problem in the conventional Fourier-domain optical processor based phase shifter is presented. Comparisons between the measured phase shifter output RF amplitude and phase responses with theory, which show excellent agreement, are also presented for the first time. Experimental results demonstrate the full -180° to + 180° phase shift with little RF signal amplitude variation of less than 3 dB and with a phase deviation of less than 4° over a 7.5 GHz to 26.5 GHz frequency range, and the phase shifter exhibits a long term stable performance.

  13. A joint estimation detection of Glaucoma progression in 3D spectral domain optical coherence tomography optic nerve head images.

    Science.gov (United States)

    Belghith, Akram; Bowd, Christopher; Weinreb, Robert N; Zangwill, Linda M

    2014-03-18

    Glaucoma is an ocular disease characterized by distinctive changes in the optic nerve head (ONH) and visual field. Glaucoma can strike without symptoms and causes blindness if it remains without treatment. Therefore, early disease detection is important so that treatment can be initiated and blindness prevented. In this context, important advances in technology for non-invasive imaging of the eye have been made providing quantitative tools to measure structural changes in ONH topography, an essential element for glaucoma detection and monitoring. 3D spectral domain optical coherence tomography (SD-OCT), an optical imaging technique, has been commonly used to discriminate glaucomatous from healthy subjects. In this paper, we present a new framework for detection of glaucoma progression using 3D SD-OCT images. In contrast to previous works that the retinal nerve fiber layer (RNFL) thickness measurement provided by commercially available spectral-domain optical coherence tomograph, we consider the whole 3D volume for change detection. To integrate a priori knowledge and in particular the spatial voxel dependency in the change detection map, we propose the use of the Markov Random Field to handle a such dependency. To accommodate the presence of false positive detection, the estimated change detection map is then used to classify a 3D SDOCT image into the "non-progressing" and "progressing" glaucoma classes, based on a fuzzy logic classifier. We compared the diagnostic performance of the proposed framework to existing methods of progression detection.

  14. A joint estimation detection of Glaucoma progression in 3D spectral domain optical coherence tomography optic nerve head images

    Science.gov (United States)

    Belghith, Akram; Bowd, Christopher; Weinreb, Robert N.; Zangwill, Linda M.

    2014-03-01

    Glaucoma is an ocular disease characterized by distinctive changes in the optic nerve head (ONH) and visual field. Glaucoma can strike without symptoms and causes blindness if it remains without treatment. Therefore, early disease detection is important so that treatment can be initiated and blindness prevented. In this context, important advances in technology for non-invasive imaging of the eye have been made providing quantitative tools to measure structural changes in ONH topography, an essential element for glaucoma detection and monitoring. 3D spectral domain optical coherence tomography (SD-OCT), an optical imaging technique, has been commonly used to discriminate glaucomatous from healthy subjects. In this paper, we present a new framework for detection of glaucoma progression using 3D SD-OCT images. In contrast to previous works that the retinal nerve fiber layer (RNFL) thickness measurement provided by commercially available spectral-domain optical coherence tomograph, we consider the whole 3D volume for change detection. To integrate a priori knowledge and in particular the spatial voxel dependency in the change detection map, we propose the use of the Markov Random Field to handle a such dependency. To accommodate the presence of false positive detection, the estimated change detection map is then used to classify a 3D SDOCT image into the "non-progressing" and "progressing" glaucoma classes, based on a fuzzy logic classifier. We compared the diagnostic performance of the proposed framework to existing methods of progression detection.

  15. Parametric spectral correlations of disordered systems in the Fourier domain

    CERN Document Server

    Guarneri, I; Zakrzewski, J A; Molinari, L; Casati, G; Guarneri, I; Zyczkowski, K; Zakrzewski, J; Molinari, L; Casati, G

    1995-01-01

    A Fourier analysis of parametric level dynamics for random matrices periodically depending on a phase is developed. We demonstrate both theoretically and numerically that under very general conditions the correlation C(\\varphi ) of level velocities is singular at \\varphi =0 for any symmetry class; the singularity is revealed by algebraic tails in Fourier transforms, and is milder, the stronger the level repulsion in the chosen ensemble. The singularity is strictly connected with the divergence of the 2nd moments of level derivatives of appropriate order, and its type is specified to leading terms for Gaussian, stationary ensembles of GOE, GUE, GSE types, and for the Gaussian ensemble of Periodic Banded Random Matrices, in which a breaking of symmetry occurs. In the latter case, we examine the behaviour of correlations in the diffusive regime and in the localized one as well, finding a singularity like that of pure GUE cases. In all the considered ensembles we study the statistics of the Fourier coefficients o...

  16. Modulated Magnetic Nanowires for Controlling Domain Wall Motion: Toward 3D Magnetic Memories

    KAUST Repository

    Ivanov, Yurii P.

    2016-05-03

    Cylindrical magnetic nanowires are attractive materials for next generation data storage devices owing to the theoretically achievable high domain wall velocity and their efficient fabrication in highly dense arrays. In order to obtain control over domain wall motion, reliable and well-defined pinning sites are required. Here, we show that modulated nanowires consisting of alternating nickel and cobalt sections facilitate efficient domain wall pinning at the interfaces of those sections. By combining electron holography with micromagnetic simulations, the pinning effect can be explained by the interaction of the stray fields generated at the interface and the domain wall. Utilizing a modified differential phase contrast imaging, we visualized the pinned domain wall with a high resolution, revealing its three-dimensional vortex structure with the previously predicted Bloch point at its center. These findings suggest the potential of modulated nanowires for the development of high-density, three-dimensional data storage devices. © 2016 American Chemical Society.

  17. Swept source/Fourier domain polarization sensitive optical coherence tomography with a passive polarization delay unit.

    Science.gov (United States)

    Baumann, Bernhard; Choi, WooJhon; Potsaid, Benjamin; Huang, David; Duker, Jay S; Fujimoto, James G

    2012-04-23

    Polarization sensitive optical coherence tomography (PS-OCT) is a functional imaging method that provides additional contrast using the light polarizing properties of a sample. This manuscript describes PS-OCT based on ultrahigh speed swept source / Fourier domain OCT operating at 1050 nm at 100 kHz axial scan rates using single mode fiber optics and a multiplexing approach. Unlike previously reported PS-OCT multiplexing schemes, the method uses a passive polarization delay unit and does not require active polarization modulating devices. This advance decreases system cost and avoids complex synchronization requirements. The polarization delay unit was implemented in the sample beam path in order to simultaneously illuminate the sample with two different polarization states. The orthogonal polarization components for the depth-multiplexed signals from the two input states were detected using dual balanced detection. PS-OCT images were computed using Jones calculus. 3D PS-OCT imaging was performed in the human and rat retina. In addition to standard OCT images, PS-OCT images were generated using contrast form birefringence and depolarization. Enhanced tissue discrimination as well as quantitative measurements of sample properties was demonstrated using the additional contrast and information contained in the PS-OCT images.

  18. Real-time Graphics Processing Unit Based Fourier Domain Optical Coherence Tomography and Surgical Applications

    Science.gov (United States)

    Zhang, Kang

    2011-12-01

    In this dissertation, real-time Fourier domain optical coherence tomography (FD-OCT) capable of multi-dimensional micrometer-resolution imaging targeted specifically for microsurgical intervention applications was developed and studied. As a part of this work several ultra-high speed real-time FD-OCT imaging and sensing systems were proposed and developed. A real-time 4D (3D+time) OCT system platform using the graphics processing unit (GPU) to accelerate OCT signal processing, the imaging reconstruction, visualization, and volume rendering was developed. Several GPU based algorithms such as non-uniform fast Fourier transform (NUFFT), numerical dispersion compensation, and multi-GPU implementation were developed to improve the impulse response, SNR roll-off and stability of the system. Full-range complex-conjugate-free FD-OCT was also implemented on the GPU architecture to achieve doubled image range and improved SNR. These technologies overcome the imaging reconstruction and visualization bottlenecks widely exist in current ultra-high speed FD-OCT systems and open the way to interventional OCT imaging for applications in guided microsurgery. A hand-held common-path optical coherence tomography (CP-OCT) distance-sensor based microsurgical tool was developed and validated. Through real-time signal processing, edge detection and feed-back control, the tool was shown to be capable of track target surface and compensate motion. The micro-incision test using a phantom was performed using a CP-OCT-sensor integrated hand-held tool, which showed an incision error less than +/-5 microns, comparing to >100 microns error by free-hand incision. The CP-OCT distance sensor has also been utilized to enhance the accuracy and safety of optical nerve stimulation. Finally, several experiments were conducted to validate the system for surgical applications. One of them involved 4D OCT guided micro-manipulation using a phantom. Multiple volume renderings of one 3D data set were

  19. Fingerprint Ridge Frequency Estimation in the Fourier Domain

    Directory of Open Access Journals (Sweden)

    PATRICIU, V.-V.

    2014-11-01

    Full Text Available Ridge frequency is an important parameter in fingerprint image processing and feature extraction. However, ridge frequency estimation is a difficult task in noisy fingerprint images. A simple and accurate method for the computation of fingerprint ridge frequency using the Fourier spectrum is proposed. The results of the experiments conducted on a collection of fingerprints as well as a quantitative method for performance evaluation based on a Gabor filter-bank are presented. The proposed method is robust with respect to noise and reliable frequency images are obtained.

  20. On domain decomposition preconditioner of BPS type for finite element discretizations of 3D elliptic equations

    Science.gov (United States)

    Korneev, V. G.

    2012-09-01

    BPS is a well known an efficient and rather general domain decomposition Dirichlet-Dirichlet type preconditioner, suggested in the famous series of papers Bramble, Pasciak and Schatz (1986-1989). Since then, it has been serving as the origin for the whole family of domain decomposition Dirichlet-Dirichlet type preconditioners-solvers as for h so hp discretizations of elliptic problems. For its original version, designed for h discretizations, the named authors proved the bound O(1 + log2 H/ h) for the relative condition number under some restricting conditions on the domain decomposition and finite element discretization. Here H/ h is the maximal relation of the characteristic size H of a decomposition subdomain to the mesh parameter h of its discretization. It was assumed that subdomains are images of the reference unite cube by trilinear mappings. Later similar bounds related to h discretizations were proved for more general domain decompositions, defined by means of coarse tetrahedral meshes. These results, accompanied by the development of some special tools of analysis aimed at such type of decompositions, were summarized in the book of Toselli and Widlund (2005). This paper is also confined to h discretizations. We further expand the range of admissible domain decompositions for constructing BPS preconditioners, in which decomposition subdomains can be convex polyhedrons, satisfying some conditions of shape regularity. We prove the bound for the relative condition number with the same dependence on H/ h as in the bound given above. Along the way to this result, we simplify the proof of the so called abstract bound for the relative condition number of the domain decomposition preconditioner. In the part, related to the analysis of the interface sub-problem preconditioning, our technical tools are generalization of those used by Bramble, Pasciak and Schatz.

  1. Methodology for time-domain estimation of storm time geoelectric fields using the 3-D magnetotelluric response tensors

    Science.gov (United States)

    Kelbert, Anna; Balch, Christopher C.; Pulkkinen, Antti; Egbert, Gary D.; Love, Jeffrey J.; Rigler, E. Joshua; Fujii, Ikuko

    2017-07-01

    Geoelectric fields at the Earth's surface caused by magnetic storms constitute a hazard to the operation of electric power grids and related infrastructure. The ability to estimate these geoelectric fields in close to real time and provide local predictions would better equip the industry to mitigate negative impacts on their operations. Here we report progress toward this goal: development of robust algorithms that convolve a magnetic storm time series with a frequency domain impedance for a realistic three-dimensional (3-D) Earth, to estimate the local, storm time geoelectric field. Both frequency domain and time domain approaches are presented and validated against storm time geoelectric field data measured in Japan. The methods are then compared in the context of a real-time application.

  2. Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization

    Directory of Open Access Journals (Sweden)

    Vuthy Ea

    2015-07-01

    Full Text Available Recent investigations on 3D chromatin folding revealed that the eukaryote genomes are both highly compartmentalized and extremely dynamic. This review presents the most recent advances in topological domains’ organization of the eukaryote genomes and discusses the relationship to chromatin loop formation. CTCF protein appears as a central factor of these two organization levels having either a strong insulating role at TAD borders, or a weaker architectural role in chromatin loop formation. TAD borders directly impact on chromatin dynamics by restricting contacts within specific genomic portions thus confining chromatin loop formation within TADs. We discuss how sub-TAD chromatin dynamics, constrained into a recently described statistical helix conformation, can produce functional interactions by contact stabilization.

  3. Combined impedance spectroscopy and Fourier domain optical coherence tomography to monitor cells in three-dimensional structures.

    Science.gov (United States)

    Bagnaninchi, Pierre O

    2010-04-01

    To assess non-invasively and in real time the three- dimensional organization of cells within porous matrices by combining Fourier Domain Optical Coherence Tomography (FDOCT) and Impedance Spectroscopy (IS). Broadband interferences resulting from the recombination of in-depth light scattering events within the sample and light from a reference arm are measured as a modulation of the spectrum generated by a superluminescent laser diode (lambdao = 930nm, FWHM 90nm). Fourier transform allows in-depth localization of the scatterers, and the 3D microstructure of the sample is reconstructed by raster scanning. Simultaneously impedance spectroscopy is performed with a dielectric probe connected to an impedance analyzer to gather additional cellular information, and synchronized with FDOCT measurements. A combined IS-FDOCT system allowing an axial resolution of 5 micrometer in tissues and impedance measurements over the range 20MHz-1GHz has been developed. Alginate matrices have been characterized in terms of microstructure and impedance. Matrices seeded with adipose-derived stem cells have been monitored without the use of labeling agent. We have developed a multimodality system that will be instrumental to non-invasively monitor changes in total cell volume fraction and infer cell-specific dielectric properties in 3D structure.

  4. 3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling.

    Science.gov (United States)

    Segura, Joan; Sanchez-Garcia, Ruben; Tabas-Madrid, Daniel; Cuenca-Alba, Jesus; Sorzano, Carlos Oscar S; Carazo, Jose Maria

    2016-02-23

    Electron microscopy (EM) is experiencing a revolution with the advent of a new generation of Direct Electron Detectors, enabling a broad range of large and flexible structures to be resolved well below 1 nm resolution. Although EM techniques are evolving to the point of directly obtaining structural data at near-atomic resolution, for many molecules the attainable resolution might not be enough to propose high-resolution structural models. However, accessing information on atomic coordinates is a necessary step toward a deeper understanding of the molecular mechanisms that allow proteins to perform specific tasks. For that reason, methods for the integration of EM three-dimensional maps with x-ray and NMR structural data are being developed, a modeling task that is normally referred to as fitting, resulting in the so called hybrid models. In this work, we present a novel application-3DIANA-specially targeted to those cases in which the EM map resolution is medium or low and additional experimental structural information is scarce or even lacking. In this way, 3DIANA statistically evaluates proposed/potential contacts between protein domains, presents a complete catalog of both structurally resolved and predicted interacting regions involving these domains and, finally, suggests structural templates to model the interaction between them. The evaluation of the proposed interactions is computed with DIMERO, a new method that scores physical binding sites based on the topology of protein interaction networks, which has recently shown the capability to increase by 200% the number of domain-domain interactions predicted in interactomes as compared to previous approaches. The new application displays the information at a sequence and structural level and is accessible through a web browser or as a Chimera plugin at http://3diana.cnb.csic.es.

  5. Global classical solutions to the 3D isentropic compressible Navier-Stokes equations in a bounded domain

    Science.gov (United States)

    Yu, Haibo; Zhao, Junning

    2017-01-01

    In this paper, we study the global existence for classical solutions to the 3D isentropic compressible Navier-Stokes equations in a cuboid domain. Compared to the Cauchy problem studied in Hoff (1995 J. Differ. Equ. 120 215-54), Hoff (2005 J. Math. Fluid Mech. 7 315-38), Huang et al (2012 Commun. Pure Appl. Math. 65 549-85), some new thoughts are applied to obtain upper bounds for density. Precisely, through piecewise estimation and some time-depending a priori estimates, we establish time-uniform upper bounds for density under the assumption that the initial energy is small. The initial vacuum is allowed.

  6. Massive parallelization of a 3D finite difference electromagnetic forward solution using domain decomposition methods on multiple CUDA enabled GPUs

    Science.gov (United States)

    Schultz, A.

    2010-12-01

    3D forward solvers lie at the core of inverse formulations used to image the variation of electrical conductivity within the Earth's interior. This property is associated with variations in temperature, composition, phase, presence of volatiles, and in specific settings, the presence of groundwater, geothermal resources, oil/gas or minerals. The high cost of 3D solutions has been a stumbling block to wider adoption of 3D methods. Parallel algorithms for modeling frequency domain 3D EM problems have not achieved wide scale adoption, with emphasis on fairly coarse grained parallelism using MPI and similar approaches. The communications bandwidth as well as the latency required to send and receive network communication packets is a limiting factor in implementing fine grained parallel strategies, inhibiting wide adoption of these algorithms. Leading Graphics Processor Unit (GPU) companies now produce GPUs with hundreds of GPU processor cores per die. The footprint, in silicon, of the GPU's restricted instruction set is much smaller than the general purpose instruction set required of a CPU. Consequently, the density of processor cores on a GPU can be much greater than on a CPU. GPUs also have local memory, registers and high speed communication with host CPUs, usually through PCIe type interconnects. The extremely low cost and high computational power of GPUs provides the EM geophysics community with an opportunity to achieve fine grained (i.e. massive) parallelization of codes on low cost hardware. The current generation of GPUs (e.g. NVidia Fermi) provides 3 billion transistors per chip die, with nearly 500 processor cores and up to 6 GB of fast (DDR5) GPU memory. This latest generation of GPU supports fast hardware double precision (64 bit) floating point operations of the type required for frequency domain EM forward solutions. Each Fermi GPU board can sustain nearly 1 TFLOP in double precision, and multiple boards can be installed in the host computer system. We

  7. Optical Coherence Tomography Noise Reduction Using Anisotropic Local Bivariate Gaussian Mixture Prior in 3D Complex Wavelet Domain

    Directory of Open Access Journals (Sweden)

    Hossein Rabbani

    2013-01-01

    Full Text Available In this paper, MMSE estimator is employed for noise-free 3D OCT data recovery in 3D complex wavelet domain. Since the proposed distribution for noise-free data plays a key role in the performance of MMSE estimator, a priori distribution for the pdf of noise-free 3D complex wavelet coefficients is proposed which is able to model the main statistical properties of wavelets. We model the coefficients with a mixture of two bivariate Gaussian pdfs with local parameters which are able to capture the heavy-tailed property and inter- and intrascale dependencies of coefficients. In addition, based on the special structure of OCT images, we use an anisotropic windowing procedure for local parameters estimation that results in visual quality improvement. On this base, several OCT despeckling algorithms are obtained based on using Gaussian/two-sided Rayleigh noise distribution and homomorphic/nonhomomorphic model. In order to evaluate the performance of the proposed algorithm, we use 156 selected ROIs from 650 × 512 × 128 OCT dataset in the presence of wet AMD pathology. Our simulations show that the best MMSE estimator using local bivariate mixture prior is for the nonhomomorphic model in the presence of Gaussian noise which results in an improvement of 7.8 ± 1.7 in CNR.

  8. First 3D radiative transfer with scattering for domain-decomposed MHD simulations

    Energy Technology Data Exchange (ETDEWEB)

    Hayek, W [Research School of Astronomy and Astrophysics, Australian National University, Cotter Road, Weston Creek ACT 2611 (Australia)], E-mail: hayek@mpa-garching.mpg.de

    2008-12-15

    This paper presents an implementation of the Gauss-Seidel solver for radiative transfer with scattering in the Oslo Stagger Code. It fully supports MPI parallelism through domain decomposition of the simulation box, enabling fast computation of radiative transfer at a high resolution. Continuum and line opacities are treated with either a multigroup method or opacity sampling. Line scattering probabilities are estimated using the van Regemorter approximation for de-excitation rates of electron collisions. A solar-type test simulation with continuum and line scattering exhibits a steeper temperature gradient due to decreased radiative heating above the optical surface when compared with the strict local thermodynamic equilibrium (LTE) case. The classical van Regemorter approximation may overestimate the importance of line scattering, implying that the true temperature structure will be in between the LTE case and the scattering case considered here. It is demonstrated that continuum scattering is unimportant in the case of the Sun.

  9. First 3D radiative transfer with scattering for domain-decomposed MHD simulations

    Science.gov (United States)

    Hayek, W.

    2008-12-01

    This paper presents an implementation of the Gauss Seidel solver for radiative transfer with scattering in the Oslo Stagger Code. It fully supports MPI parallelism through domain decomposition of the simulation box, enabling fast computation of radiative transfer at a high resolution. Continuum and line opacities are treated with either a multigroup method or opacity sampling. Line scattering probabilities are estimated using the van Regemorter approximation for de-excitation rates of electron collisions. A solar-type test simulation with continuum and line scattering exhibits a steeper temperature gradient due to decreased radiative heating above the optical surface when compared with the strict local thermodynamic equilibrium (LTE) case. The classical van Regemorter approximation may overestimate the importance of line scattering, implying that the true temperature structure will be in between the LTE case and the scattering case considered here. It is demonstrated that continuum scattering is unimportant in the case of the Sun.

  10. DWDM-TO-OTDM Conversion by Time-Domain Optical Fourier Transformation

    DEFF Research Database (Denmark)

    Mulvad, Hans Christian Hansen; Hu, Hao; Galili, Michael

    2011-01-01

    We propose DWDM-OTDM conversion by time-domain optical Fourier transformation. Error-free conversion of a 16×10 Gbit/s 50 GHz-spacing DWDM data signal to a 160 Gbit/s OTDM signal with a 2.1 dB average penalty is demonstrated.......We propose DWDM-OTDM conversion by time-domain optical Fourier transformation. Error-free conversion of a 16×10 Gbit/s 50 GHz-spacing DWDM data signal to a 160 Gbit/s OTDM signal with a 2.1 dB average penalty is demonstrated....

  11. 1.28 Tbaud Nyquist Signal Transmission using Time-Domain Optical Fourier Transformation based Receiver

    DEFF Research Database (Denmark)

    Hu, Hao; Kong, Deming; Palushani, Evarist

    2013-01-01

    We demonstrate transmission of a 1.28-Tbaud Nyquist-OTDM signal over a record distance of 100 km with detection by time-domain optical Fourier transformation followed by FEC decoding, resulting in error-free performance for all tributaries.......We demonstrate transmission of a 1.28-Tbaud Nyquist-OTDM signal over a record distance of 100 km with detection by time-domain optical Fourier transformation followed by FEC decoding, resulting in error-free performance for all tributaries....

  12. Dialog-Based 3D-Image Recognition Using a Domain Ontology

    Science.gov (United States)

    Hois, Joana; Wünstel, Michael; Bateman, John A.; Röfer, Thomas

    The combination of vision and speech, together with the resulting necessity for formal representations, builds a central component of an autonomous system. A robot that is supposed to navigate autonomously through space must be able to perceive its environment as automatically as possible. But each recognition system has its own inherent limits. Especially a robot whose task is to navigate through unknown terrain has to deal with unidentified or even unknown objects, thus compounding the recognition problem still further. The system described in this paper takes this into account by trying to identify objects based on their functionality where possible. To handle cases where recognition is insufficient, we examine here two further strategies: on the one hand, the linguistic reference and labeling of the unidentified objects and, on the other hand, ontological deduction. This approach then connects the probabilistic area of object recognition with the logical area of formal reasoning. In order to support formal reasoning, additional relational scene information has to be supplied by the recognition system. Moreover, for a sound ontological basis for these reasoning tasks, it is necessary to define a domain ontology that provides for the representation of real-world objects and their corresponding spatial relations in linguistic and physical respects. Physical spatial relations and objects are measured by the visual system, whereas linguistic spatial relations and objects are required for interactions with a user.

  13. Fractional Fourier transform for partially coherent beam in spatial-frequency domain

    Institute of Scientific and Technical Information of China (English)

    Cai Yang-Jian; Lin Qiang

    2004-01-01

    By using Fourier transform and the tensor analysis method, the fractional Fourier transform (FRT) in the spatialfrequency domain for partially coherent beams is derived. Based on the FRT in the spatial-frequency domain, an analytical transform formula is derived for a partially coherent twisted anisotropic Gaussian-Schell model (GSM) beam passing through the FRT system. The connections between the FRT formula and the generalized diffraction integral formulae for partially coherent beams through an aligned optical system and a misaligned optical system in the spatialfrequency domain are discussed, separately. By using the derived formula, the intensity distribution of partially coherent twisted anisotropic GSM beams in the FRT plane are studied in detail. The formula derived provide a convenient tool for analysing and calculating the FRTs of the partially coherent beams in spatial-frequency domain.

  14. Fourier Domain Decoding Algorithm of Non-Binary LDPC codes for Parallel Implementation

    CERN Document Server

    Kasai, Kenta

    2010-01-01

    For decoding non-binary low-density parity check (LDPC) codes, logarithm-domain sum-product (Log-SP) algorithms were proposed for reducing quantization effects of SP algorithm in conjunction with FFT. Since FFT is not applicable in the logarithm domain, the computations required at check nodes in the Log-SP algorithms are computationally intensive. What is worth, check nodes usually have higher degree than variable nodes. As a result, most of the time for decoding is used for check node computations, which leads to a bottleneck effect. In this paper, we propose a Log-SP algorithm in the Fourier domain. With this algorithm, the role of variable nodes and check nodes are switched. The intensive computations are spread over lower-degree variable nodes, which can be efficiently calculated in parallel. Furthermore, we develop a fast calculation method for the estimated bits and syndromes in the Fourier domain.

  15. Open-geometry Fourier modal method: modeling nanophotonic structures in infinite domains

    DEFF Research Database (Denmark)

    Häyrynen, Teppo; de Lasson, Jakob Rosenkrantz; Gregersen, Niels

    2016-01-01

    We present an open-geometry Fourier modal method based on a new combination of open boundary conditions and an efficient k-space discretization. The open boundary of the computational domain is obtained using basis functions that expand the whole space, and the integrals subsequently appearing due...

  16. Selection of convolution kernel in non-uniform fast Fourier transform for Fourier domain optical coherence tomography.

    Science.gov (United States)

    Chan, Kenny K H; Tang, Shuo

    2011-12-19

    Gridding based non-uniform fast Fourier transform (NUFFT) has recently been shown as an efficient method of processing non-linearly sampled data from Fourier-domain optical coherence tomography (FD-OCT). This method requires selecting design parameters, such as kernel function type, oversampling ratio and kernel width, to balance between computational complexity and accuracy. The Kaiser-Bessel (KB) and Gaussian kernels have been used independently on the NUFFT algorithm for FD-OCT. This paper compares the reconstruction error and speed for the optimization of these design parameters and justifies particular kernel choice for FD-OCT applications. It is found that for on-the-fly computation of the kernel function, the simpler Gaussian function offers a better accuracy-speed tradeoff. The KB kernel, however, is a better choice in the pre-computed kernel mode of NUFFT, in which the processing speed is no longer dependent on the kernel function type. Finally, the algorithm is used to reconstruct in-vivo images of a human finger at a camera limited 50k A-line/s.

  17. Measurement of Choroidal Thickness in Normal Eyes Using 3D OCT-1000 Spectral Domain Optical Coherence Tomography

    Science.gov (United States)

    Shin, Joong Won; Shin, Yong Un; Cho, Hee Yoon

    2012-01-01

    Purpose To study choroidal thickness and its topographic profile in normal eyes using 3D OCT-1000 spectral domain optical coherence tomography and the correlation with age and refractive error. Methods Fifty-seven eyes (45 individuals) with no visual complaints or ocular disease underwent horizontal and vertical line scanning using 3D OCT-1000. The definition of choroidal thickness was the vertical distance between the posterior edge of the hyper-reflective retinal pigment epithelium and the choroid/sclera junction. Choroidal thickness was measured in the subfoveal area at 500 µm intervals from the fovea to 2,500 µm in the nasal, temporal, superior, and inferior regions. The spherical equivalent refractive error was measured by autorefractometry. Statistical analysis was used to confirm the correlations of choroidal thickness with age and refraction error. Results The mean age of the 45 participants (57 eyes) was 45.28 years. Detailed visualization of the choroid for measuring its thickness was possible in 63.3% of eyes. The mean subfoveal choroidal thickness was found to be 270.8 µm (standard deviation [SD], ±51 µm), in horizontal scanning and 275.0 µm (SD, ±49 µm) in vertical scanning. The temporal choroidal thickness was greater than any 500 µm interval in corresponding locations, and there was no significant difference between the superior and inferior choroid as far as 2,000 µm from the fovea. Age and refractive error were associated with subfoveal choroidal thickness in terms of regression (p Choroidal thickness in normal Korean eyes can be measured using 3D OCT-1000 with high resolution line scanning. The topographical profile of choroidal thickness varies depending on its location. Age and refractive error are essential factors for interpretation of choroidal thickness. PMID:22870023

  18. Extracting and compensating dispersion mismatch in ultrahigh-resolution Fourier domain OCT imaging of the retina

    Science.gov (United States)

    Choi, WooJhon; Baumann, Bernhard; Swanson, Eric A.; Fujimoto, James G.

    2012-01-01

    We present a numerical approach to extract the dispersion mismatch in ultrahigh-resolution Fourier domain optical coherence tomography (OCT) imaging of the retina. The method draws upon an analogy with a Shack-Hartmann wavefront sensor. By exploiting mathematical similarities between the expressions for aberration in optical imaging and dispersion mismatch in spectral / Fourier domain OCT, Shack-Hartmann principles can be extended from the two-dimensional paraxial wavevector space (or the x-y plane in the spatial domain) to the one-dimensional wavenumber space (or the z-axis in the spatial domain). For OCT imaging of the retina, different retinal layers, such as the retinal nerve fiber layer (RNFL), the photoreceptor inner and outer segment junction (IS/OS), or all the retinal layers near the retinal pigment epithelium (RPE) can be used as point source beacons in the axial direction, analogous to point source beacons used in conventional two-dimensional Shack-Hartman wavefront sensors for aberration characterization. Subtleties regarding speckle phenomena in optical imaging, which affect the Shack-Hartmann wavefront sensor used in adaptive optics, also occur analogously in this application. Using this approach and carefully suppressing speckle, the dispersion mismatch in spectral / Fourier domain OCT retinal imaging can be successfully extracted numerically and used for numerical dispersion compensation to generate sharper, ultrahigh-resolution OCT images. PMID:23187353

  19. A Fourier penalty method for solving the time dependent Maxwell's equations in domains with curved boundaries

    CERN Document Server

    Galagusz, Ryan; Nave, Jean-Christophe

    2015-01-01

    We present a high order, Fourier penalty method for the Maxwell's equations in the vicinity of perfect electric conductor boundary conditions. The approach relies on extending the irregular non-periodic domain of the equations to a regular periodic domain by removing the exact boundary conditions and introducing an analytic forcing term in the extended domain. The forcing, or penalty term is chosen to systematically enforce the boundary conditions to high order in the penalty parameter, which then allows for higher order numerical methods. We present an efficient numerical method for constructing the penalty term, and discretize the resulting equations using a Fourier spectral method. We demonstrate convergence orders of up to 3.5 for the one dimensional Maxwell's equations, and show that the numerical method does not suffer from dispersion (or pollution) errors. We also illustrate the approach in two dimensions and demonstrate convergence orders of 2.5 for transverse magnetic modes and 1.5 for the transverse...

  20. All-optical signal processing of OTDM and OFDM signals based on time-domain Optical Fourier Transformation

    DEFF Research Database (Denmark)

    Clausen, Anders; Guan, Pengyu; Mulvad, Hans Christian Hansen

    2014-01-01

    All-optical time-domain Optical Fourier Transformation utilised for signal processing of ultra-high-speed OTDM signals and OFDM signals will be presented.......All-optical time-domain Optical Fourier Transformation utilised for signal processing of ultra-high-speed OTDM signals and OFDM signals will be presented....

  1. Optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling

    Science.gov (United States)

    Li, Y.; Han, B.; Métivier, L.; Brossier, R.

    2016-09-01

    We investigate an optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling. An anti-lumped mass strategy is incorporated to minimize the numerical dispersion. The optimal finite-difference coefficients and the mass weighting coefficients are obtained by minimizing the misfit between the normalized phase velocities and the unity. An iterative damped least-squares method, the Levenberg-Marquardt algorithm, is utilized for the optimization. Dispersion analysis shows that the optimal fourth-order scheme presents less grid dispersion and anisotropy than the conventional fourth-order scheme with respect to different Poisson's ratios. Moreover, only 3.7 grid-points per minimum shear wavelength are required to keep the error of the group velocities below 1%. The memory cost is then greatly reduced due to a coarser sampling. A parallel iterative method named CARP-CG is used to solve the large ill-conditioned linear system for the frequency-domain modeling. Validations are conducted with respect to both the analytic viscoacoustic and viscoelastic solutions. Compared with the conventional fourth-order scheme, the optimal scheme generates wavefields having smaller error under the same discretization setups. Profiles of the wavefields are presented to confirm better agreement between the optimal results and the analytic solutions.

  2. Fourier Self-deconvolution Using Approximation Obtained from Frequency Domain Wavelet Transform as a Linear Function

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A new method of resolving overlapped peak, Fourier self-deconvolution (FSD) using approximation CN obtained from frequency domain wavelet transform of F(ω) yielded by Fourier transform of overlapped peak signals f(t) as the linear function, was presented in this paper.Compared with classical FSD, the new method exhibits excellent resolution for different overlapped peak signals such as HPLC signals, and have some characteristics such as an extensive applicability for any overlapped peak shape signals and a simple operation because of no selection procedure of the linear function. Its excellent resolution for those different overlapped peak signals is mainly because F(ω) obtained from Fourier transform of f(t) and CN obtained from wavelet transform of F(ω) have the similar linearity and peak width. The effect of those fake peaks can be eliminated by the algorithm proposed by authors. This method has good potential in the process of different overlapped peak signals.

  3. Hinge-loop mutation can be used to control 3D domain swapping and amyloidogenesis of human cystatin C.

    Science.gov (United States)

    Orlikowska, Marta; Jankowska, Elżbieta; Kołodziejczyk, Robert; Jaskólski, Mariusz; Szymańska, Aneta

    2011-02-01

    Cystatins are natural inhibitors of cysteine proteases, enzymes that are widely distributed in animals, plants, and microorganisms. Human cystatin C (hCC) has been also recognized as an aggregating protein directly involved in the formation of pathological amyloid fibrils, and these amyloidogenic properties greatly increase in a naturally occurring L68Q hCC variant. For a long time only dimeric structure of wild-type hCC has been known. The dimer is created through 3D domain swapping process, in which two parts of the cystatin structure become separated from each other and next exchanged between two molecules. Important role in the domain swapping plays the L1 loop, which connects the exchanging segments and, upon dimerization, transforms from a β-turn into a part of a long β-strand. In the very recently published first monomeric structure of human cystatin C (hCC-stab1), dimerization was abrogated due to clasping of the β-strands from the swapping domains by an engineered disulfide bridge. We have designed and constructed another mutated cystatin C with the smallest possible structural intervention, that is a single-point mutation replacing hydrophobic V57 from the L1 loop by polar asparagine, known as a stabilizer of a β-turn motif. V57N hCC mutant occurred to be stable in its monomeric form and crystallized as a monomer, revealing typical cystatin fold with a five-stranded antiparallel β-sheet wrapped around an α-helix. Here we report a 2.04 Å resolution crystal structure of V57N hCC and discuss the architecture of the protein in comparison to chicken cystatin, hCC-stab1 and dimeric hCC.

  4. Optical image encryption based on compressive sensing and chaos in the fractional Fourier domain

    Science.gov (United States)

    Liu, Xingbin; Mei, Wenbo; Du, Huiqian

    2014-11-01

    We propose a novel image encryption algorithm based on compressive sensing (CS) and chaos in the fractional Fourier domain. The original image is dimensionality reduction measured using CS. The measured values are then encrypted using chaotic-based double-random-phase encoding technique in the fractional Fourier transform domain. The measurement matrix and the random-phase masks used in the encryption process are formed from pseudo-random sequences generated by the chaotic map. In this proposed algorithm, the final result is compressed and encrypted. The proposed cryptosystem decreases the volume of data to be transmitted and simplifies the keys for distribution simultaneously. Numerical experiments verify the validity and security of the proposed algorithm.

  5. A Novel Medical Image Watermarking in Three-dimensional Fourier Compressed Domain

    Directory of Open Access Journals (Sweden)

    Baoru Han

    2015-09-01

    Full Text Available Digital watermarking is a research hotspot in the field of image security, which is protected digital image copyright. In order to ensure medical image information security, a novel medical image digital watermarking algorithm in three-dimensional Fourier compressed domain is proposed. The novel medical image digital watermarking algorithm takes advantage of three-dimensional Fourier compressed domain characteristics, Legendre chaotic neural network encryption features and robust characteristics of differences hashing, which is a robust zero-watermarking algorithm. On one hand, the original watermarking image is encrypted in order to enhance security. It makes use of Legendre chaotic neural network implementation. On the other hand, the construction of zero-watermarking adopts differences hashing in three-dimensional Fourier compressed domain. The novel watermarking algorithm does not need to select a region of interest, can solve the problem of medical image content affected. The specific implementation of the algorithm and the experimental results are given in the paper. The simulation results testify that the novel algorithm possesses a desirable robustness to common attack and geometric attack.

  6. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 1: Theory and method

    Science.gov (United States)

    Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  7. Joint multi-mode dispersion extraction in Fourier and space time domains

    CERN Document Server

    Bose, Sandip; Valero, Henri-Pierre

    2013-01-01

    In this paper we present a novel broadband approach for the extraction of dispersion curves of multiple time frequency overlapped dispersive modes such as in borehole acoustic data. The new approach works jointly in the Fourier and space time domains and, in contrast to existing space time approaches that mainly work for time frequency separated signals, efficiently handles multiple signals with significant time frequency overlap. The proposed method begins by exploiting the slowness (phase and group) and time location estimates based on frequency-wavenumber (f-k) domain sparsity penalized broadband dispersion extraction method as presented in \\cite{AeronTSP2011}. In this context we first present a Cramer Rao Bound (CRB) analysis for slowness estimation in the (f-k) domain and show that for the f-k domain broadband processing, group slowness estimates have more variance than the phase slowness estimates and time location estimates. In order to improve the group slowness estimates we exploit the time compactne...

  8. A method for improving the computational efficiency of a Laplace-Fourier domain waveform inversion based on depth estimation

    Science.gov (United States)

    Zhang, Dong; Zhang, Xiaolei; Yuan, Jianzheng; Ke, Rui; Yang, Yan; Hu, Ying

    2016-01-01

    The Laplace-Fourier domain full waveform inversion can simultaneously restore both the long and intermediate short-wavelength information of velocity models because of its unique characteristics of complex frequencies. This approach solves the problem of conventional frequency-domain waveform inversion in which the inversion result is excessively dependent on the initial model due to the lack of low frequency information in seismic data. Nevertheless, the Laplace-Fourier domain waveform inversion requires substantial computational resources and long computation time because the inversion must be implemented on different combinations of multiple damping constants and multiple frequencies, namely, the complex frequencies, which are much more numerous than the Fourier frequencies. However, if the entire target model is computed on every complex frequency for the Laplace-Fourier domain inversion (as in the conventional frequency domain inversion), excessively redundant computation will occur. In the Laplace-Fourier domain waveform inversion, the maximum depth penetrated by the seismic wave decreases greatly due to the application of exponential damping to the seismic record, especially with use of a larger damping constant. Thus, the depth of the area effectively inverted on a complex frequency tends to be much less than the model depth. In this paper, we propose a method for quantitative estimation of the effective inversion depth in the Laplace-Fourier domain inversion based on the principle of seismic wave propagation and mathematical analysis. According to the estimated effective inversion depth, we can invert and update only the model area above the effective depth for every complex frequency without loss of accuracy in the final inversion result. Thus, redundant computation is eliminated, and the efficiency of the Laplace-Fourier domain waveform inversion can be improved. The proposed method was tested in numerical experiments. The experimental results show that

  9. Multiple-image encryption based on phase mask multiplexing in fractional Fourier transform domain.

    Science.gov (United States)

    Liansheng, Sui; Meiting, Xin; Ailing, Tian

    2013-06-01

    A multiple-image encryption scheme is proposed based on the phase retrieval process and phase mask multiplexing in the fractional Fourier transform domain. First, each original gray-scale image is encoded into a phase only function by using the proposed phase retrieval process. Second, all the obtained phase functions are modulated into an interim, which is encrypted into the final ciphertext by using the fractional Fourier transform. From a plaintext image, a group of phase masks is generated in the encryption process. The corresponding decrypted image can be recovered from the ciphertext only with the correct phase mask group in the decryption process. Simulation results show that the proposed phase retrieval process has high convergence speed, and the encryption algorithm can avoid cross-talk; in addition, its encrypted capacity is considerably enhanced.

  10. Silhouette-free image encryption using interference in the multiple-parameter fractional Fourier transform domain.

    Science.gov (United States)

    Zhong, Zhi; Qin, Haitao; Liu, Lei; Zhang, Yabin; Shan, Mingguang

    2017-03-20

    A novel approach for silhouette-free image encryption based on interference is proposed using discrete multiple-parameter fractional Fourier transform (DMPFrFT), which generalizes from fractional Fourier transform. An original image is firstly applied by chaotic pixel scrambling (CPS) and then encoded into the real part of a complex signal. Using interference principle, the complex signal generates three phase-only masks in DMPFrFT domain. The silhouette of the original image cannot be extracted using one or two of the three phase-only masks. The parameters of both CPS and DMPFrFT can also serve as encryption keys to extend the key space, which further enhance the level of cryptosystem security. Numerical simulations are demonstrated to show the feasibility and validity of this approach.

  11. Sub-Nyquist Sampling and Fourier Domain Beamforming in Volumetric Ultrasound Imaging.

    Science.gov (United States)

    Burshtein, Amir; Birk, Michael; Chernyakova, Tanya; Eilam, Alon; Kempinski, Arcady; Eldar, Yonina C

    2016-05-01

    A key step in ultrasound image formation is digital beamforming of signals sampled by several transducer elements placed upon an array. High-resolution digital beamforming introduces the demand for sampling rates significantly higher than the signals' Nyquist rate, which greatly increases the volume of data that must be transmitted from the system's front end. In 3-D ultrasound imaging, 2-D transducer arrays rather than 1-D arrays are used, and more scan lines are needed. This implies that the amount of sampled data is vastly increased with respect to 2-D imaging. In this work, we show that a considerable reduction in data rate can be achieved by applying the ideas of Xampling and frequency domain beamforming (FDBF), leading to a sub-Nyquist sampling rate, which uses only a portion of the bandwidth of the ultrasound signals to reconstruct the image. We extend previous work on FDBF for 2-D ultrasound imaging to accommodate the geometry imposed by volumetric scanning and a 2-D grid of transducer elements. High image quality from low-rate samples is demonstrated by simulation of a phantom image composed of several small reflectors. Our technique is then applied to raw data of a heart ventricle phantom obtained by a commercial 3-D ultrasound system. We show that by performing 3-D beamforming in the frequency domain, sub-Nyquist sampling and low processing rate are achievable, while maintaining adequate image quality.

  12. EUROPEANA AND 3D

    Directory of Open Access Journals (Sweden)

    D. Pletinckx

    2012-09-01

    Full Text Available The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  13. A numerical method for solving the 3D unsteady incompressible Navier Stokes equations in curvilinear domains with complex immersed boundaries

    Science.gov (United States)

    Ge, Liang; Sotiropoulos, Fotis

    2007-08-01

    A novel numerical method is developed that integrates boundary-conforming grids with a sharp interface, immersed boundary methodology. The method is intended for simulating internal flows containing complex, moving immersed boundaries such as those encountered in several cardiovascular applications. The background domain (e.g. the empty aorta) is discretized efficiently with a curvilinear boundary-fitted mesh while the complex moving immersed boundary (say a prosthetic heart valve) is treated with the sharp-interface, hybrid Cartesian/immersed-boundary approach of Gilmanov and Sotiropoulos [A. Gilmanov, F. Sotiropoulos, A hybrid cartesian/immersed boundary method for simulating flows with 3d, geometrically complex, moving bodies, Journal of Computational Physics 207 (2005) 457-492.]. To facilitate the implementation of this novel modeling paradigm in complex flow simulations, an accurate and efficient numerical method is developed for solving the unsteady, incompressible Navier-Stokes equations in generalized curvilinear coordinates. The method employs a novel, fully-curvilinear staggered grid discretization approach, which does not require either the explicit evaluation of the Christoffel symbols or the discretization of all three momentum equations at cell interfaces as done in previous formulations. The equations are integrated in time using an efficient, second-order accurate fractional step methodology coupled with a Jacobian-free, Newton-Krylov solver for the momentum equations and a GMRES solver enhanced with multigrid as preconditioner for the Poisson equation. Several numerical experiments are carried out on fine computational meshes to demonstrate the accuracy and efficiency of the proposed method for standard benchmark problems as well as for unsteady, pulsatile flow through a curved, pipe bend. To demonstrate the ability of the method to simulate flows with complex, moving immersed boundaries we apply it to calculate pulsatile, physiological flow

  14. Multifractal imaging filtering and decomposition methods in space, Fourier frequency, and eigen domains

    Directory of Open Access Journals (Sweden)

    Qiuming Cheng

    2007-06-01

    Full Text Available The patterns shown on two-dimensional images (fields used in geosciences reflect the end products of geo-processes that occurred on the surface and in the subsurface of the Earth. Anisotropy of these types of patterns can provide information useful for interpretation of geo-processes and identification of features in the mapped area. Quantification of the anisotropy property is therefore essential for image processing and interpretation. This paper introduces several techniques newly developed on the basis of multifractal modeling in space, Fourier frequency, and eigen domains, respectively. A singularity analysis method implemented in the space domain can be used to quantify the intensity and anisotropy of local singularities. The second method, called S-A, characterizes the generalized scale invariance property of a field in the Fourier frequency domain. The third method characterizes the field using a power-law model on the basis of eigenvalues and eigenvectors of the field. The applications of these methods are demonstrated with a case study of Environment Scan Electric Microscope (ESEM microimages for identification of sphalerite (ZnS ore minerals from the Jinding Pb/Zn/Ag mineral deposit in Shangjiang District, Yunnan Province, China.

  15. Convergence Properties of Generalized Fourier Series on a Parallel Hexagon Domain

    Institute of Scientific and Technical Information of China (English)

    WANG SHU-YUN; LIANG XUE-ZHANG; FU YAO; SUN XUE-NAN

    2009-01-01

    A new Rogosinski-type kernel function is constructed using kernel function of partial sums Sn(f; t) of generalized Fourier series on a parallel hexagon domain Ω associating with three-direction partition. We prove that an operator Wn(f; t) with the new kernel function converges uniformly to any continuous function f(t) ∈ C*(Ω) (the space of all continuous functions with period Ω) on Ω. Moreover, the convergence order of the operator is presented for the smooth approached function.

  16. Fourier domain mode-locked swept source at 1050 nm based on a tapered amplifier

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang;

    2010-01-01

    While swept source optical coherence tomography (OCT) in the 1050 nm range is promising for retinal imaging, there are certain challenges. Conventional semiconductor gain media have limited output power, and the performance of high-speed Fourier domain mode-locked (FDML) lasers suffers from...... achieved stable FDML operation, exploiting the full bandwidth of the tapered amplifier despite high dispersion. The light source operates at a repetition rate of 116 kHz with an effective average output power in excess of 30 mW. With a total sweep range of 70 nm, we achieved an axial resolution of 15 μm...

  17. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    Science.gov (United States)

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  18. Perfectly matched layer stability in 3-D finite-difference time-domain simulation of electroacoustic wave propagation in piezoelectric crystals with different symmetry class.

    Science.gov (United States)

    Nova, Omar; Peña, Néstor; Ney, Michel

    2015-03-01

    Perfectly matched layer stability in 3-D finite-difference time-domain simulations is demonstrated for two piezoelectric crystals: barium sodium niobate and bismuth germanate. Stability is achieved by adapting the discretization grid to meet a central-difference scheme. Stability is demonstrated by showing that the total energy of the piezoelectric system remains constant in the steady state.

  19. Ultrahigh-speed imaging of the rat retina using ultrahigh-resolution spectral/Fourier domain OCT

    Science.gov (United States)

    Liu, Jonathan J.; Potsaid, Benjamin; Chen, Yueli; Gorczynska, Iwona; Srinivasan, Vivek J.; Duker, Jay S.; Fujimoto, James G.

    2010-02-01

    We performed OCT imaging of the rat retina at 70,000 axial scans per second with ~3 μm axial resolution. Three-dimensional OCT (3D-OCT) data sets of the rat retina were acquired. The high speed and high density data sets enable improved en face visualization by reducing eye motion artifacts and improve Doppler OCT measurements. Minimal motion artifacts were visible and the OCT fundus images offer more precise registration of individual OCT images to retinal fundus features. Projection OCT fundus images show features such as the nerve fiber layer, retinal capillary networks and choroidal vasculature. Doppler OCT images and quantitative measurements show pulsatility in retinal blood vessels. Doppler OCT provides noninvasive in vivo quantitative measurements of retinal blood flow properties and may benefit studies of diseases such as glaucoma and diabetic retinopathy. Ultrahigh speed imaging using ultrahigh resolution spectral / Fourier domain OCT promises to enable novel protocols for measuring small animal retinal structure and retinal blood flow. This non-invasive imaging technology is a promising tool for monitoring disease progression in rat and mouse models to assess ocular disease pathogenesis and response to treatment.

  20. Real-time display on Fourier domain optical coherence tomography system using a graphics processing unit.

    Science.gov (United States)

    Watanabe, Yuuki; Itagaki, Toshiki

    2009-01-01

    Fourier domain optical coherence tomography (FD-OCT) requires resampling of spectrally resolved depth information from wavelength to wave number, and the subsequent application of the inverse Fourier transform. The display rates of OCT images are much slower than the image acquisition rates due to processing speed limitations on most computers. We demonstrate a real-time display of processed OCT images using a linear-in-wave-number (linear-k) spectrometer and a graphics processing unit (GPU). We use the linear-k spectrometer with the combination of a diffractive grating with 1200 lines/mm and a F2 equilateral prism in the 840-nm spectral region to avoid calculating the resampling process. The calculations of the fast Fourier transform (FFT) are accelerated by the GPU with many stream processors, which realizes highly parallel processing. A display rate of 27.9 frames/sec for processed images (2048 FFT size x 1000 lateral A-scans) is achieved in our OCT system using a line scan CCD camera operated at 27.9 kHz.

  1. Analysis of collagen fiber domain organization by Fourier second harmonic generation microscopy

    Science.gov (United States)

    Ghazaryan, Ara; Tsai, Halley F.; Hayrapetyan, Gor; Chen, Wei-Liang; Chen, Yang-Fang; Jeong, Myung Yung; Kim, Chang-Seok; Chen, Shean-Jen; Dong, Chen-Yuan

    2013-03-01

    We present an automated and systematic two-dimensional discrete Fourier transform (2D-FFT) approach to analyze collagen fiber organization through the use of second harmonic generation (SHG) microscopy. Average orientations of individual domains and Ising-like order parameters introduced to characterize the correlation between orientations of adjacent domains may be used to quantitatively characterize fibrous tissues. Our approach was applied to analyze tissues including rat tail tendon, mouse skin, bovine corneas, and human corneas. We also show that collagen fiber organization in normal and keratokonus human corneas may be distinguished. The current approach may be used for the quantitative differentiation of SHG collagen fiber morphology in different tissues and may be applied for diagnostic purposes.

  2. A method for estimating spatial resolution of real image in the Fourier domain

    CERN Document Server

    Mizutani, Ryuta; Takekoshi, Susumu; Inomoto, Chie; Nakamura, Naoya; Itokawa, Masanari; Arai, Makoto; Oshima, Kenichi; Takeuchi, Akihisa; Uesugi, Kentaro; Terada, Yasuko; Suzuki, Yoshio

    2016-01-01

    Spatial resolution is a fundamental parameter in structural sciences. In crystallography, the resolution is determined from the detection limit of high-angle diffraction in reciprocal space. In electron microscopy, correlation in the Fourier domain is used for estimating the resolution. In this paper, we report a method for estimating the spatial resolution of real images from a logarithmic intensity plot in the Fourier domain. The logarithmic intensity plots of test images indicated that the full width at half maximum of a Gaussian point-spread function can be estimated from the images. The spatial resolution of imaging X-ray microtomography using Fresnel zone-plate optics was also estimated with this method. A cross section of a test object visualized with the imaging microtomography indicated that square-wave patterns up to 120-nm pitch were resolved. The logarithmic intensity plot was calculated from a tomographic cross section of brain tissue. The full width at half maximum of the point spread function e...

  3. Study of Anterior Chamber Aqueous Tube Shunt by Fourier-Domain Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Chunhui Jiang

    2012-01-01

    Full Text Available Purpose. This cross-sectional, observational study used Fourier-domain optical coherence tomography (OCT to examine the position, patency, and the interior entrance site of anterior chamber (AC aqueous tube shunts. Methods. The OCT, slitlamp biomicroscopy, and gonioscopy findings of 23 eyes of 18 patients with AC shunts were collected and compared. Results. OCT images demonstrated the shunt position and patency in all 23 eyes, and the details of the AC entrance in 16 eyes. The position of the tube varied, with the majority (14/23 on the surface of the iris. The exact position of the AC entrance relative to Schwalbe’s line (SL could be determined in 9 eyes (posterior to SL in 7 eyes, anterior in 2 eyes. At the AC entrance, growth of fibrous scar tissue was present between the tube and the corneal endothelium in all 16 eyes in which the entrance could be clearly visualized. It’s a new finding that could not be visualized by slitlamp examination or lower resolution OCT. Conclusion. Compared to slitlamp examination, Fourier-domain OCT of AC tube shunts provided more detailed anatomic information regarding the insertion level relative to SL, scar tissue between the tube and the corneal endothelium, and patency of the tube opening.

  4. Subtle Solar Retinopathy Detected by Fourier-domain Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Ya-Hsin Kung

    2010-07-01

    Full Text Available Solar retinopathy is a retinal injury caused by direct or indirect sun-gazing and solar eclipse observation without protection. Subtle changes in the retinal damage might not be evident on fundus photography and fluorescein angiography. A 40-year-old veteran suffered from paracentral scotoma in his left eye shortly after unprotected solar eclipse observation about 1 month earlier. His visual acuity was 6/5 in the right eye and 6/6 in the left. Anterior segments were normal bilaterally. Dilated fundus examination, fluorescein angiography, and central visual field testing did not reveal any abnormal findings. Fourier-domain optical coherence tomography was used for evaluation, and a focal defect in the inner and outer segments of the photoreceptor layer band was noted in the paracentral region of the fovea in the left eye, with central foveal thickness of 198 μm. Solar retinopathy is preventable with adequate eye protection. Education should be reinforced to the public. In mildly affected individuals with subtle retinal damage, Fourier-domain optical coherence tomography could be a useful imaging tool to detect the disease.

  5. Homogenization of the evolution Stokes equation in a perforated domain with a stochastic Fourier boundary condition

    KAUST Repository

    Bessaih, Hakima

    2015-04-01

    The evolution Stokes equation in a domain containing periodically distributed obstacles subject to Fourier boundary condition on the boundaries is considered. We assume that the dynamic is driven by a stochastic perturbation on the interior of the domain and another stochastic perturbation on the boundaries of the obstacles. We represent the solid obstacles by holes in the fluid domain. The macroscopic (homogenized) equation is derived as another stochastic partial differential equation, defined in the whole non perforated domain. Here, the initial stochastic perturbation on the boundary becomes part of the homogenized equation as another stochastic force. We use the twoscale convergence method after extending the solution with 0 in the holes to pass to the limit. By Itô stochastic calculus, we get uniform estimates on the solution in appropriate spaces. In order to pass to the limit on the boundary integrals, we rewrite them in terms of integrals in the whole domain. In particular, for the stochastic integral on the boundary, we combine the previous idea of rewriting it on the whole domain with the assumption that the Brownian motion is of trace class. Due to the particular boundary condition dealt with, we get that the solution of the stochastic homogenized equation is not divergence free. However, it is coupled with the cell problem that has a divergence free solution. This paper represents an extension of the results of Duan and Wang (Comm. Math. Phys. 275:1508-1527, 2007), where a reaction diffusion equation with a dynamical boundary condition with a noise source term on both the interior of the domain and on the boundary was studied, and through a tightness argument and a pointwise two scale convergence method the homogenized equation was derived. © American Institute of Mathematical Sciences.

  6. 3D Marine CSEM Interferometry by Multidimensional Deconvolution in the Wavenumber Domain for a Sparse Receiver Grid

    NARCIS (Netherlands)

    Hunziker, J.W.; Slob, E.C.; Fan, Y.; Snieder, R.; Wapenaar, C.P.A.

    2013-01-01

    We use interferometry by multidimensional deconvolution in combination with synthetic aperture sources in 3D to suppress the airwave and the direct field, and to decrease source uncertainty in marine Controlled-Source electromagnetics. We show with this numerical study that the method works for very

  7. 3D打印技术在医疗领域的研究进展%Research Progress of 3D Printing Technology in Medical Domain

    Institute of Scientific and Technical Information of China (English)

    管吉; 杨树欣; 管叶; 高磊

    2014-01-01

    本文介绍了3D打印技术的概念、实现方式及其发展历程,并结合实例阐述了其在医疗领域的研究现状,指出3D打印技术将为器官移植带来新的发展方向。%This paper introduces the concept, implementation methods and development history of 3D printing technology, and enumerates various instances to illuminate the research status of 3D printing technology in medical domain. This paper also points out that 3D printing technology will bring about a new development direction for organ transplantation.

  8. UND: unite-and-divide method in Fourier and Radon domains for line segment detection.

    Science.gov (United States)

    Shi, Daming; Gao, Junbin; Rahmdel, Payam S; Antolovich, Michael; Clark, Tony

    2013-06-01

    In this paper, we extend our previously proposed line detection method to line segmentation using a so-called unite-and-divide (UND) approach. The methodology includes two phases, namely the union of spectra in the frequency domain, and the division of the sinogram in Radon space. In the union phase, given an image, its sinogram is obtained by parallel 2D multilayer Fourier transforms, Cartesian-to-polar mapping and 1D inverse Fourier transform. In the division phase, the edges of butterfly wings in the neighborhood of every sinogram peak are firstly specified, with each neighborhood area corresponding to a window in image space. By applying the separated sinogram of each such windowed image, we can extract the line segments. The division Phase identifies the edges of butterfly wings in the neighborhood of every sinogram peak such that each neighborhood area corresponds to a window in image space. Line segments are extracted by applying the separated sinogram of each windowed image. Our experiments are conducted on benchmark images and the results reveal that the UND method yields higher accuracy, has lower computational cost and is more robust to noise, compared to existing state-of-the-art methods.

  9. INTERFERENCE MITIGATING BASED ON FRACTIONAL FOURIER TRANSFORM IN TRANSFORM DOMAIN COMMUNICATION SYSTEM

    Institute of Scientific and Technical Information of China (English)

    Wang Chuandan; Zhang Zhongpei; Li Shaoqian

    2007-01-01

    The method of FRactional Fourier Transform (FRFT) is introduced to Transform Domain Communication System (TDCS) for signal transforming in the paper after theoretical analysis. The method yields optimal Basis Function (BF) by FRFT with optimal transform angle. The TDCS using the proposed method has wider usable spectrum, stronger robustness and better ability of anti non-stationary jamming than using usual methods, such as Fourier Transform (FT), Auto Regressive (AR), Wavelet Transform (WT), etc. The main simulation results are as follows. First, the Bit Error Rate (BER) Pb is close to theoretical bound of no jamming no matter in single tone or in linear chirp interference. Second, the interference-to-signal ratio J/E is at least 12dB more than that of Direct Spread Spectrum System (DSSS) under the same BER if the spectrum hopping-to-signal ratio is 1:20 in chirp plus hopping interfering. Third, the Eb/No (when estimation difference is 90% between transmitter and receiver) is about 3.5dB or about 0.5dB (when estimation difference is 10% between transmitter and receiver) more than that of theoretical result when no estimation difference under Pb = 10-2.

  10. Real-time resampling in Fourier domain optical coherence tomography using a graphics processing unit.

    Science.gov (United States)

    Van der Jeught, Sam; Bradu, Adrian; Podoleanu, Adrian Gh

    2010-01-01

    Fourier domain optical coherence tomography (FD-OCT) requires either a linear-in-wavenumber spectrometer or a computationally heavy software algorithm to recalibrate the acquired optical signal from wavelength to wavenumber. The first method is sensitive to the position of the prism in the spectrometer, while the second method drastically slows down the system speed when it is implemented on a serially oriented central processing unit. We implement the full resampling process on a commercial graphics processing unit (GPU), distributing the necessary calculations to many stream processors that operate in parallel. A comparison between several recalibration methods is made in terms of performance and image quality. The GPU is also used to accelerate the fast Fourier transform (FFT) and to remove the background noise, thereby achieving full GPU-based signal processing without the need for extra resampling hardware. A display rate of 25 framessec is achieved for processed images (1,024 x 1,024 pixels) using a line-scan charge-coupled device (CCD) camera operating at 25.6 kHz.

  11. A 3-D Time-Domain Coupled Model for Nonlinear Waves Acting on A Box-Shaped Ship Fixed in A Harbor

    Institute of Scientific and Technical Information of China (English)

    WANG Da-guo; ZOU Zhi-li; THAM Leslie George

    2011-01-01

    A 3-D time-domain numerical coupled model is developed to obtain an efficient method for nonlinear waves acting on a box-shaped ship fixed in a harbor.The domain is divided into the inner domain and the outer domain.The inner domain is the area beneath the ship and the flow is described by the simplified Euler equations.The remaining area is the outer domain and the flow is defined by the higher-order Boussinesq equations in order to consider the nonlinearity of the wave motions.Along the interface boundaries between the inner domain and the outer domain,the volume flux is assumed to be continuous and the wave pressures are equal.Relevant physical experiment is conducted to validate the present model and it is shown that the numerical results agree with the experimental data.Compared the coupled model with the flow in the inner domain governed by the Laplace equation,the present coupled model is more efficient and its solution procedure is simpler,which is particularly useful for the study on the effect of the nonlinear waves acting on a fixed box-shaped ship in a large harbor.

  12. Modeling and analysis of polarization effects in Fourier domain mode-locked lasers.

    Science.gov (United States)

    Jirauschek, Christian; Huber, Robert

    2015-05-15

    We develop a theoretical model for Fourier domain mode-locked (FDML) lasers in a non-polarization-maintaining configuration, which is the most widely used type of FDML source. This theoretical approach is applied to analyze a widely wavelength-swept FDML setup, as used for picosecond pulse generation by temporal compression of the sweeps. We demonstrate that good agreement between simulation and experiment can only be obtained by including polarization effects due to fiber bending birefringence, polarization mode dispersion, and cross-phase modulation into the theoretical model. Notably, the polarization dynamics are shown to have a beneficial effect on the instantaneous linewidth, resulting in improved coherence and thus compressibility of the wavelength-swept FDML output.

  13. Fourier domain image fusion for differential X-ray phase-contrast breast imaging.

    Science.gov (United States)

    Coello, Eduardo; Sperl, Jonathan I; Bequé, Dirk; Benz, Tobias; Scherer, Kai; Herzen, Julia; Sztrókay-Gaul, Anikó; Hellerhoff, Karin; Pfeiffer, Franz; Cozzini, Cristina; Grandl, Susanne

    2017-04-01

    X-Ray Phase-Contrast (XPC) imaging is a novel technology with a great potential for applications in clinical practice, with breast imaging being of special interest. This work introduces an intuitive methodology to combine and visualize relevant diagnostic features, present in the X-ray attenuation, phase shift and scattering information retrieved in XPC imaging, using a Fourier domain fusion algorithm. The method allows to present complementary information from the three acquired signals in one single image, minimizing the noise component and maintaining visual similarity to a conventional X-ray image, but with noticeable enhancement in diagnostic features, details and resolution. Radiologists experienced in mammography applied the image fusion method to XPC measurements of mastectomy samples and evaluated the feature content of each input and the fused image. This assessment validated that the combination of all the relevant diagnostic features, contained in the XPC images, was present in the fused image as well.

  14. Dispersion management for controlling image plane in Fourier-domain spectrally encoded endoscopy.

    Science.gov (United States)

    Merman, Michal; Yelin, Dvir

    2011-02-28

    Spectrally encoded endoscopy (SEE) uses single optical fiber and miniature diffractive optics to allow imaging through a miniature probe. Utilizing Fourier-domain interferometry, SEE was shown capable of video-rate three-dimensional imaging, albeit at limited depth of field due to the limited spectral resolution of the detection spectrometer. We show that by using dispersion management at the reference arm of the interferometer, the tilt and curvature of the field of view could be adjusted without modifying the endoscopic probe itself. By controlling the group velocity dispersion, this technique is demonstrated useful for imaging specimen regions which reside outside the system's depth of field. This approach could be used to improve usability, functionality and image quality of SEE without affecting probe size and flexibility.

  15. Two-dimensional phase unwrapping in Doppler Fourier domain optical coherence tomography.

    Science.gov (United States)

    Wang, Yimin; Huang, David; Su, Ya; Yao, X Steve

    2016-11-14

    For phase-related imaging modalities using interferometric techniques, it is important to develop effective method to recover phase information that is mathematically wrapped. In this paper, we propose and demonstrate a two-dimensional (2D) method to achieve effective phase unwrapping in Doppler Fourier-domain (FD) optical coherence tomography (OCT), and recover the discontinuous phase distribution in retinal blood flow successfully for the first time in Doppler OCT studies. The proposed method is based on phase gradient approach in the axial dimension, with phase denoising performed through 2D window moving average in the sampled phase image using complex Doppler OCT data. The 2D unwrapping is carried out to correct phase discontinuities in the wrapped Doppler phase map, and the abrupt phase changes can be identified and corrected accurately. The proposed algorithm is computationally efficient and easy to be implemented.

  16. Adaptive anisotropic diffusion for noise reduction of phase images in Fourier domain Doppler optical coherence tomography.

    Science.gov (United States)

    Xia, Shaoyan; Huang, Yong; Peng, Shizhao; Wu, Yanfeng; Tan, Xiaodi

    2016-08-01

    Phase image in Fourier domain Doppler optical coherence tomography offers additional flow information of investigated samples, which provides valuable evidence towards accurate medical diagnosis. High quality phase images are thus desirable. We propose a noise reduction method for phase images by combining a synthetic noise estimation criteria based on local noise estimator (LNE) and distance median value (DMV) with anisotropic diffusion model. By identifying noise and signal pixels accurately and diffusing them with different coefficients respectively and adaptive iteration steps, we demonstrated the effectiveness of our proposed method in both phantom and mouse artery images. Comparison with other methods such as filtering method (mean, median filtering), wavelet method, probabilistic method and partial differential equation based methods in terms of peak signal-to-noise ratio (PSNR), equivalent number of looks (ENL) and contrast-to-noise ratio (CNR) showed the advantages of our method in reserving image energy and removing noise.

  17. Optical double image security using random phase fractional Fourier domain encoding and phase-retrieval algorithm

    Science.gov (United States)

    Rajput, Sudheesh K.; Nishchal, Naveen K.

    2017-04-01

    We propose a novel security scheme based on the double random phase fractional domain encoding (DRPE) and modified Gerchberg-Saxton (G-S) phase retrieval algorithm for securing two images simultaneously. Any one of the images to be encrypted is converted into a phase-only image using modified G-S algorithm and this function is used as a key for encrypting another image. The original images are retrieved employing the concept of known-plaintext attack and following the DRPE decryption steps with all correct keys. The proposed scheme is also used for encryption of two color images with the help of convolution theorem and phase-truncated fractional Fourier transform. With some modification, the scheme is extended for simultaneous encryption of gray-scale and color images. As a proof-of-concept, simulation results have been presented for securing two gray-scale images, two color images, and simultaneous gray-scale and color images.

  18. Calibration of Fourier domain short coherence interferometer for absolute distance measurements.

    Science.gov (United States)

    Montonen, R; Kassamakov, I; Hæggström, E; Österberg, K

    2015-05-20

    We calibrated and determined the measurement uncertainty of a custom-made Fourier domain short coherence interferometer operated in laboratory conditions. We compared the optical thickness of two thickness standards and three coverslips determined with our interferometer to the geometric thickness determined by SEM. Using this calibration data, we derived a calibration function with a 95% confidence level system uncertainty of (5.9×10(-3)r+2.3)  μm, where r is the optical distance in μm, across the 240 μm optical measurement range. The confidence limit includes contributions from uncertainties in the optical thickness, geometric thickness, and refractive index measurements as well as uncertainties arising from cosine errors and thermal expansion. The results show feasibility for noncontacting absolute distance characterization with micrometer-level accuracy. This instrument is intended for verifying the alignment of the discs of an accelerating structure in the possible future compact linear collider.

  19. Broadband Fourier domain mode-locked laser for optical coherence tomography at 1060 nm

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang

    2012-01-01

    , enable acquisition of densely sampled three-dimensional datasets covering a wide field of view. However, semiconductor optical amplifiers (SOAs)-the typical laser gain media for swept sources-for the 1060nm band could until recently only provide relatively low output power and bandwidth. We have......Optical coherence tomography (OCT) in the 1060nm range is interesting for in vivo imaging of the human posterior eye segment (retina, choroid, sclera) due to low absorption in water and deep penetration into the tissue. Rapidly tunable light sources, such as Fourier domain mode-locked (FDML) lasers...... implemented an FDML laser using a new SOA featuring broad gain bandwidth and high output power. The output spectrum coincides with the wavelength range of minimal water absorption, making the light source ideal for OCT imaging of the posterior eye segment. With a moderate SOA current (270 mA) we achieve up...

  20. Between the Real and the Virtual: 3D visualization in the Cultural Heritage domain - expectations and prospects

    Directory of Open Access Journals (Sweden)

    Sorin Hermon

    2011-05-01

    Full Text Available The paper discusses two uses of 3D Visualization and Virtual Reality (hereafter VR of Cultural Heritage (CH assets: a less used one, in the archaeological / historical research and a more frequent one, as a communication medium in CH museums. While technological effort has been mainly invested in improving the “accuracy” of VR (determined as how truthfully it reproduces the “CH reality”, issues related to scientific requirements, (data transparency, separation between “real” and “virtual”, etc., are largely neglected, or at least not directly related to the 3D outcome, which may explain why, after more than twenty years of producing VR models, they are still rarely used in the archaeological research. The paper will present a proposal for developing VR tools as such as to be meaningful CH research tools as well as a methodology for designing VR outcomes to be used as a communication medium in CH museums.

  1. Combining Public Domain and Professional Panoramic Imagery for the Accurate and Dense 3d Reconstruction of the Destroyed Bel Temple in Palmyra

    Science.gov (United States)

    Wahbeh, W.; Nebiker, S.; Fangi, G.

    2016-06-01

    This paper exploits the potential of dense multi-image 3d reconstruction of destroyed cultural heritage monuments by either using public domain touristic imagery only or by combining the public domain imagery with professional panoramic imagery. The focus of our work is placed on the reconstruction of the temple of Bel, one of the Syrian heritage monuments, which was destroyed in September 2015 by the so called "Islamic State". The great temple of Bel is considered as one of the most important religious buildings of the 1st century AD in the East with a unique design. The investigations and the reconstruction were carried out using two types of imagery. The first are freely available generic touristic photos collected from the web. The second are panoramic images captured in 2010 for documenting those monuments. In the paper we present a 3d reconstruction workflow for both types of imagery using state-of-the art dense image matching software, addressing the non-trivial challenges of combining uncalibrated public domain imagery with panoramic images with very wide base-lines. We subsequently investigate the aspects of accuracy and completeness obtainable from the public domain touristic images alone and from the combination with spherical panoramas. We furthermore discuss the challenges of co-registering the weakly connected 3d point cloud fragments resulting from the limited coverage of the touristic photos. We then describe an approach using spherical photogrammetry as a virtual topographic survey allowing the co-registration of a detailed and accurate single 3d model of the temple interior and exterior.

  2. Global existence and asymptotic behavior for the 3D compressible Navier-Stokes equations without heat conductivity in a bounded domain

    Science.gov (United States)

    Wu, Guochun

    2017-01-01

    In this paper, we investigate the global existence and uniqueness of strong solutions to the initial boundary value problem for the 3D compressible Navier-Stokes equations without heat conductivity in a bounded domain with slip boundary. The global existence and uniqueness of strong solutions are obtained when the initial data is near its equilibrium in H2 (Ω). Furthermore, the exponential convergence rates of the pressure and velocity are also proved by delicate energy methods.

  3. Identification of iridocorneal angle structures assessed by Fourier domain optical coherence tomography.

    Science.gov (United States)

    Fernández-Vigo, J I; Fernández-Vigo, C; Martínez de la Casa, J M; Sáenz-Francés, F; Santos-Bueso, E; García Feijóo, J; Fernández-Vigo, J A

    2016-02-01

    To study the structures of the iridocorneal angle using anterior segment optical coherence tomography (OCT) defining their tomographic characteristics and quantifying their identification frequency. A cross-sectional study was performed on 267 right eyes of 267 consecutive healthy patients. Fourier domain OCT RTVue (Optovue Inc, CA, EE. UU.) was used to examine the iridocorneal angle in the nasal and temporal sectors. The structures evaluated were: Sclerocorneal limbus, sclerocorneal transition, Schwalbe's line, trabecular meshwork, Schlemm's canal, scleral spur, and angular recess. Within and between agreements to identify structures were calculated using Cohen's kappa coefficient. The mean age was 41.3 ± 14.3 years (range 20-80), with 57% being women. The sclerocorneal limbus, sclerocorneal transition, and Schwalbe's line were identified by 98.7, 97 and 93.4% of the images, respectively, with the trabecular meshwork and Schlemm's canal being identified in 91% of cases. The scleral spur could be identified in 85.4%, and the angular recess in 74.5%. There was no difference in the identification between the temporal and nasal sectors. Within and between agreement was k=0.92 and k=0.88, respectively, in the identification of the structures of the total images studied. Fourier domain OCT is a reliable technique for the identification of the structures of the iridocorneal angle, among which can be highlighted are, the trabecular meshwork, Schlemm's canal, scleral spur, and Schwalbe's line. Copyright © 2015 Sociedad Española de Oftalmología. Published by Elsevier España, S.L.U. All rights reserved.

  4. A WEIGHTED GENERAL DISCRETE FOURIER TRANSFORM FOR THE FREQUENCY-DOMAIN BLIND SOURCE SEPARATION OF CONVOLUTIVE MIXTURES

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    This letter deals with the frequency domain Blind Source Separation of Convolutive Mixtures(CMBSS).From the frequency representation of the"overlap and save",a Weighted General Discrete Fourier Transform (WGDFT) is derived to replace the traditional Discrete Fourier Transform (DFT).The mixing matrix on each frequency bin could be estimated more precisely from WGDFT coefficients than from DFT coefficients,which improves separation performance.Simulation results verify the validity of WGDFT for frequency domain blind source separation of convolutive mixtures.

  5. Image authentication based on double-image encryption and partial phase decryption in nonseparable fractional Fourier domain

    Science.gov (United States)

    Yuan, Lin; Ran, Qiwen; Zhao, Tieyu

    2017-02-01

    In this paper an image authentication scheme is proposed based on double-image encryption and partial phase decryption in nonseparable Fractional Fourier transform domain. Two original images are combined and transformed into the nonseparable fractional Fourier domain. Only part of the phase information of the encrypted result is kept for decryption while the rest part of phase and all the amplitude information are discarded. The two recovered images are hardly recognized by visual inspection but can be authenticated by the nonlinear correlation algorithm. The numerical simulations demonstrate the viability and validity of the proposed image authentication scheme.

  6. The Wavenumber Algorithm: Fast Fourier-Domain Imaging Using Full Matrix Capture

    Science.gov (United States)

    Hunter, A. J.; Drinkwater, B. W.; Wilcox, P. D.

    2009-03-01

    We develop a Fourier-domain approach to full matrix imaging based on the wavenumber algorithm used in synthetic aperture radar and sonar. The extension to the wavenumber algorithm for full matrix capture is described and the performance of the new algorithm is compared to the total focusing method (TFM), which we use as a representative benchmark for the time-domain algorithms. The wavenumber algorithm provides a mathematically rigorous solution to the inverse problem for the assumed forward wave propagation model, whereas the TFM employs heuristic delay-and-sum beamforming. Consequently, the wavenumber algorithm has an improved point-spread function and provides better imagery. However, the major advantage of the wavenumber algorithm is its superior computational performance. For large arrays and images, the wavenumber algorithm is several orders of magnitude faster than the TFM. On the other hand, the key advantage of the TFM is its flexibility. The wavenumber algorithm requires a regularly sampled linear array, while the TFM can handle arbitrary imaging geometries. The TFM and the wavenumber algorithm are compared using simulated and experimental data.

  7. Artifacts Induced by Selective Blanking of Time-Domain Data in Fourier Transform Mass Spectrometry

    Science.gov (United States)

    Xian, Feng; Valeja, Santosh G.; Beu, Steve C.; Hendrickson, Christopher L.; Marshall, Alan G.

    2013-11-01

    Fourier transform mass spectrometry (FTMS) of the isolated isotopic distribution for a highly charged biomolecule produces time-domain signal containing large amplitude signal "beats" separated by extended periods of much lower signal magnitude. Signal-to-noise ratio for data sampled between beats is low because of destructive interference of the signals induced by members of the isotopic distribution. Selective blanking of the data between beats has been used to increase spectral signal-to-noise ratio. However, blanking also eliminates signal components and, thus, can potentially distort the resulting FT spectrum. Here, we simulate the time-domain signal from a truncated isotopic distribution for a single charge state of an antibody. Comparison of the FT spectra produced with or without blanking and with or without added noise clearly show that blanking does not improve mass accuracy and introduces spurious peaks at both ends of the isotopic distribution (thereby making it more difficult to identify posttranslational modifications and/or adducts). Although the artifacts are reduced by use of multiple Gaussian (rather than square wave) windowing, blanking appears to offer no advantages for identifying true peaks or for mass measurement.

  8. Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units.

    Science.gov (United States)

    Li, Jian; Bloch, Pavel; Xu, Jing; Sarunic, Marinko V; Shannon, Lesley

    2011-05-01

    Fourier domain optical coherence tomography (FD-OCT) provides faster line rates, better resolution, and higher sensitivity for noninvasive, in vivo biomedical imaging compared to traditional time domain OCT (TD-OCT). However, because the signal processing for FD-OCT is computationally intensive, real-time FD-OCT applications demand powerful computing platforms to deliver acceptable performance. Graphics processing units (GPUs) have been used as coprocessors to accelerate FD-OCT by leveraging their relatively simple programming model to exploit thread-level parallelism. Unfortunately, GPUs do not "share" memory with their host processors, requiring additional data transfers between the GPU and CPU. In this paper, we implement a complete FD-OCT accelerator on a consumer grade GPU/CPU platform. Our data acquisition system uses spectrometer-based detection and a dual-arm interferometer topology with numerical dispersion compensation for retinal imaging. We demonstrate that the maximum line rate is dictated by the memory transfer time and not the processing time due to the GPU platform's memory model. Finally, we discuss how the performance trends of GPU-based accelerators compare to the expected future requirements of FD-OCT data rates.

  9. Comparison of 3D Maximum intensity projection (MIP reconstruction and 2D T2 Half-Fourier Acquisition Single-Shot Turbo Spin-Echo (HASTE sequence in magnetic resonance cholangiopancreatography

    Directory of Open Access Journals (Sweden)

    Fuad Julardžija

    2014-04-01

    Full Text Available Introduction: Magnetic resonance cholangiopancreatography (MRCP is a method that allows noninvasive visualization of pancreatobiliary tree and does not require contrast application. It is a modern method based on heavily T2-weighted imaging (hydrography, which uses bile and pancreatic secretions as a natural contrast medium. Certain weaknesses in quality of demonstration of pancreatobiliary tract can be observed in addition to its good characteristics. Our aim was to compare the 3D Maximum intensity projection (MIP reconstruction and 2D T2 Half-Fourier Acquisition Single-Shot Turbo Spin-Echo (HASTE sequence in magnetic resonance cholangiopancreatography.Methods: During the period of one year 51 patients underwent MRCP on 3T „Trio“ system. Patients of different sex and age structure were included, both outpatient and hospitalized. 3D MIP reconstruction and 2D T2 haste sequence were used according to standard scanning protocols.Results: There were 45.1% (n= 23 male and 54.9% (n=28 female patients, age range from 17 to 81 years. 2D T2 haste sequence was more susceptible to respiratory artifacts presence in 64% patients, compared to 3D MIP reconstruction with standard error (0.09, result significance indication (p=0.129 and confidence interval (0.46 to 0.81. 2D T2 haste sequences is more sensitive and superior for pancreatic duct demonstration compared to 3D MIP reconstruction with standard error (0.07, result significance indication (p=0.01 and confidence interval (0.59 to 0.87Conclusion: In order to make qualitative demonstration and analysis of hepatobiliary and pancreatic system on MR, both 2D T2 haste sequence in transversal plane and 3D MIP reconstruction are required.

  10. Limited Proteolysis Reveals That Amyloids from the 3D Domain-Swapping Cystatin B Have a Non-Native β-Sheet Topology.

    Science.gov (United States)

    Davis, Peter J; Holmes, David; Waltho, Jonathan P; Staniforth, Rosemary A

    2015-07-31

    3D domain-swapping proteins form multimers by unfolding and then sharing of secondary structure elements, often with native-like interactions. Runaway domain swapping is proposed as a mechanism for folded proteins to form amyloid fibres, with examples including serpins and cystatins. Cystatin C amyloids cause a hereditary form of cerebral amyloid angiopathy whilst cystatin B aggregates are found in cases of Unverricht-Lundborg Syndrome, a progressive form of myoclonic epilepsy. Under conditions that favour fibrillisation, cystatins populate stable 3D domain-swapped dimers both in vitro and in vivo that represent intermediates on route to the formation of fibrils. Previous work on cystatin B amyloid fibrils revealed that the α-helical region of the protein becomes disordered and identified the conservation of a continuous 20-residue elongated β-strand (residues 39-58), the latter being a salient feature of the dimeric 3D domain-swapped structure. Here we apply limited proteolysis to cystatin B amyloid fibrils and show that not only the α-helical N-terminal of the protein (residues 1-35) but also the C-terminal of the protein (residues 80-98) can be removed without disturbing the underlying fibril structure. This observation is incompatible with previous models of cystatin amyloid fibrils where the β-sheet is assumed to retain its native antiparallel arrangement. We conclude that our data favour a more generic, at least partially parallel, arrangement for cystatin β-sheet structure in mature amyloids and propose a model that remains consistent with available data for amyloids from either cystatin B or cystatin C.

  11. High-resolution 640 Gbit/s clock recovery using time-domain optical Fourier transformation and narrowband optical filter

    DEFF Research Database (Denmark)

    Mulvad, Hans Christian Hansen; Guan, P.; Kasai, K.

    2010-01-01

    We demonstrate pre-scaled 40 GHz clock recovery from 640 Gbit/s optical time-division-multiplexed data using LiNbO$_3$ modulators, based on time-domain optical Fourier transformation and optical filtering. The clock recovery is used in a 640 Gbit/s error-free transmission over 300 km....

  12. Detection of 320 Gb/s Nyquist OTDM by polarization-insensitive time-domain optical Fourier transformation

    DEFF Research Database (Denmark)

    Hu, Hao; Kong, Deming; Palushani, Evarist;

    2013-01-01

    320 Gb/s Nyquist-OTDM is generated by rectangular filtering with a bandwidth of 320 GHz and received by polarization-insensitive time-domain optical Fourier transformation (TD-OFT) followed by passive filtering. After the time-to-frequency mapping in the TD-OFT, the Nyquist-OTDM is converted...

  13. A 3D finite-difference BiCG iterative solver with the Fourier-Jacobi preconditioner for the anisotropic EIT/EEG forward problem.

    Science.gov (United States)

    Turovets, Sergei; Volkov, Vasily; Zherdetsky, Aleksej; Prakonina, Alena; Malony, Allen D

    2014-01-01

    The Electrical Impedance Tomography (EIT) and electroencephalography (EEG) forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with the finite-difference method and the optimally preconditioned Conjugate Gradient- (CG-) type iterative method for treatment of the discrete model. The numerical scheme includes the standard operations of summation and multiplication of sparse matrices and vector, as well as FFT, making it easy to implement and eligible for the effective parallel implementation. Some typical use cases for the EIT/EEG problems are considered demonstrating high efficiency of the proposed numerical technique.

  14. Application of Fourier Domain OCT Imaging Technology to the Anterior Segment of the Human Eye

    Science.gov (United States)

    Wojtkowski, Maciej; Marcos, Susana; Ortiz, Sergio; Grulkowski, Ireneusz

    The anterior segment is the front part of the human eye, which forms the optical system and hence directly impacts vision. Traumatic or pathological changes in the anterior segment may lead to vision loss and, in some cases, even blindness. Since the eighteenth century, optical instrumentation for measuring and imaging the anterior segment of the human eye has been developing along with modern ophthalmology. The application of OCT to the anterior segment imaging is particularly of interest, since this could potentially provide substantial complementary information regarding the large-scale architecture of the cornea and the crystalline lens, or on small portions of tissue imaged with high spatial resolutions comparable to regular microscopy. Especially an introduction of Fourier domain detection in OCT has opened new frontiers in OCT ophthalmic applications. The resultant substantial speed improvement enables rapid image acquisition, helping to reduce artifacts due to patient motion. Thus, it is currently possible to perform high-speed, in vivo, three-dimensional volumetric imaging over large scales within a reasonable time limit and without reducing system sensitivity. This chapter describes the state-of the art OCT technology dedicated to anterior segment imaging and indicates all important parameters which are required for optimization of the performance of OCT instrument.

  15. Reproducibility of Scleral Spur Identification and Angle Measurements Using Fourier Domain Anterior Segment Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Ricardo J. Cumba

    2012-01-01

    Full Text Available Purpose. To evaluate intraobserver and interobserver agreement in locating the scleral spur landmark (SSL and anterior chamber angle measurements obtained using Fourier Domain Anterior Segment Optical Coherence Tomography (ASOCT images. Methods. Two independent, masked observers (SR and AZC identified SSLs on ASOCT images from 31 eyes with open and nonopen angles. A third independent reader, NPB, adjudicated SSL placement if identifications differed by more than 80 μm. Nine months later, SR reidentified SSLs. Intraobserver and interobserver agreement in SSL placement, trabecular-iris space area (TISA750, and angle opening distance (AOD750 were calculated. Results. In 84% of quadrants, SR’s SSL placements during 2 sessions were within 80 μm in both the X- and Y-axes, and in 77% of quadrants, SR and AZC were within 80 μm in both axes. In adjudicated images, 90% of all quadrants were within 80 μm, 88% in nonopen-angle eyes, and 92% in open-angle eyes. The intraobserver and interobserver correlation coefficients (with and without adjudication were above 0.9 for TISA750 and AOD750 for all quadrants. Conclusions. Reproducible identification of the SSL from images obtained with FD-ASOCT is possible. The ability to identify the SSL allows reproducible measurement of the anterior chamber angle using TISA750 and AOD750.

  16. Agreement between Gonioscopic Examination and Swept Source Fourier Domain Anterior Segment Optical Coherence Tomography Imaging

    Directory of Open Access Journals (Sweden)

    Mohammed Rigi

    2016-01-01

    Full Text Available Purpose. To evaluate interobserver, intervisit, and interinstrument agreements for gonioscopy and Fourier domain anterior segment optical coherence tomography (FD ASOCT for classifying open and narrow angle eyes. Methods. Eighty-six eyes with open or narrow anterior chamber angles were included. The superior angle was classified open or narrow by 2 of 5 glaucoma specialists using gonioscopy and imaged by FD ASOCT in the dark. The superior angle of each FD ASOCT image was graded as open or narrow by 2 masked readers. The same procedures were repeated within 6 months. Kappas for interobserver and intervisit agreements for each instrument and interinstrument agreements were calculated. Results. The mean age was 50.9 (±18.4 years. Interobserver agreements were moderate to good for both gonioscopy (0.57 and 0.69 and FD ASOCT (0.58 and 0.75. Intervisit agreements were moderate to excellent for both gonioscopy (0.53 to 0.86 and FD ASOCT (0.57 and 0.85. Interinstrument agreements were fair to good (0.34 to 0.63, with FD ASOCT classifying more angles as narrow than gonioscopy. Conclusions. Both gonioscopy and FD ASOCT examiners were internally consistent with similar interobserver and intervisit agreements for angle classification. Agreement between instruments was fair to good, with FD ASOCT classifying more angles as narrow than gonioscopy.

  17. Picosecond pulses from wavelength-swept continuous-wave Fourier domain mode-locked lasers.

    Science.gov (United States)

    Eigenwillig, Christoph M; Wieser, Wolfgang; Todor, Sebastian; Biedermann, Benjamin R; Klein, Thomas; Jirauschek, Christian; Huber, Robert

    2013-01-01

    Ultrafast lasers have a crucial function in many fields of science; however, up to now, high-energy pulses directly from compact, efficient and low-power semiconductor lasers are not available. Therefore, we introduce a new approach based on temporal compression of the continuous-wave, wavelength-swept output of Fourier domain mode-locked lasers, where a narrowband optical filter is tuned synchronously to the round-trip time of light in a kilometre-long laser cavity. So far, these rapidly swept lasers enabled orders-of-magnitude speed increase in optical coherence tomography. Here we report on the generation of ~60-70 ps pulses at 390 kHz repetition rate. As energy is stored optically in the long-fibre delay line and not as population inversion in the laser-gain medium, high-energy pulses can now be generated directly from a low-power, compact semiconductor-based oscillator. Our theory predicts subpicosecond pulses with this new technique in the future.

  18. Fourier domain mode-locked swept source at 1050 nm based on a tapered amplifier.

    Science.gov (United States)

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang; Biedermann, Benjamin R; Hsu, Kevin; Hansen, Kim P; Sumpf, Bernd; Hasler, Karl-Heinz; Erbert, Götz; Jensen, Ole B; Pedersen, Christian; Huber, Robert; Andersen, Peter E

    2010-07-19

    While swept source optical coherence tomography (OCT) in the 1050 nm range is promising for retinal imaging, there are certain challenges. Conventional semiconductor gain media have limited output power, and the performance of high-speed Fourier domain mode-locked (FDML) lasers suffers from chromatic dispersion in standard optical fiber. We developed a novel light source with a tapered amplifier as gain medium, and investigated the FDML performance comparing two fiber delay lines with different dispersion properties. We introduced an additional gain element into the resonator, and thereby achieved stable FDML operation, exploiting the full bandwidth of the tapered amplifier despite high dispersion. The light source operates at a repetition rate of 116 kHz with an effective average output power in excess of 30 mW. With a total sweep range of 70 nm, we achieved an axial resolution of 15 microm in air (approximately 11 microm in tissue) in OCT measurements. As our work shows, tapered amplifiers are suitable gain media for swept sources at 1050 nm with increased output power, while high gain counteracts dispersion effects in an FDML laser.

  19. Least-squares fitting of time-domain signals for Fourier transform mass spectrometry.

    Science.gov (United States)

    Aushev, Tagir; Kozhinov, Anton N; Tsybin, Yury O

    2014-07-01

    To advance Fourier transform mass spectrometry (FTMS)-based molecular structure analysis, corresponding development of the FTMS signal processing methods and instrumentation is required. Here, we demonstrate utility of a least-squares fitting (LSF) method for analysis of FTMS time-domain (transient) signals. We evaluate the LSF method in the analysis of single- and multiple-component experimental and simulated ion cyclotron resonance (ICR) and Orbitrap FTMS transient signals. Overall, the LSF method allows one to estimate the analytical limits of the conventional instrumentation and signal processing methods in FTMS. Particularly, LSF provides accurate information on initial phases of sinusoidal components in a given transient. For instance, the phase distribution obtained for a statistical set of experimental transients reveals the effect of the first data-point problem in FT-ICR MS. Additionally, LSF might be useful to improve the implementation of the absorption-mode FT spectral representation for FTMS applications. Finally, LSF can find utility in characterization and development of filter-diagonalization method (FDM) MS.

  20. Quantization-Based Digital Audio Watermarking in Discrete Fourier Transform Domain

    Directory of Open Access Journals (Sweden)

    Senbin Yang

    2010-04-01

    Full Text Available To explore the principle and performances of Quantization Index Modulation (QIM watermarking algorithm, the realization schemes of this algorithm in Discrete Fourier Transform (DFT domain are classified into three types according to the differences of quantizer parameters, and then the illustrative diagrams of these schemes are given, so the properties of transparency, robustness and capacity of each scheme are concluded. The scheme with best distortion-robustness trade-off is found on that basis. The more efficient embedding and extracting formulas of this scheme are given, and the performances are researched by theoretical analysis rather than computer simulation. The conclusions show that the transparency is in proportion to the square of quantization step and small DFT coefficient leads to poor transparency. The robustness to Additive White Gaussian Noise (AWGN only relates to the quantization step and the algorithm is susceptible to amplitude scale and resampling attacks. The possible capacity is Fo/2 bits per second, which can satisfy various watermarking applications. To improve the robustness, an adaptive quantization algorithm based on masking properties of the Human Auditory System (HAS is proposed at the end of this paper, and the algorithm is evaluated in the analog channel environment and its robustness is proved by the results.

  1. Polymer model with Epigenetic Recoloring Reveals a Pathway for the de novo Establishment and 3D Organization of Chromatin Domains

    Science.gov (United States)

    Michieletto, D.; Orlandini, E.; Marenduzzo, D.

    2016-10-01

    One of the most important problems in development is how epigenetic domains can first be established, and then maintained, within cells. To address this question, we propose a framework that couples three-dimensional chromatin folding dynamics to a "recoloring" process modeling the writing of epigenetic marks. Because many intrachromatin interactions are mediated by bridging proteins, we consider a "two-state" model with self-attractive interactions between two epigenetic marks that are alike (either active or inactive). This model displays a first-order-like transition between a swollen, epigenetically disordered phase and a compact, epigenetically coherent chromatin globule. If the self-attraction strength exceeds a threshold, the chromatin dynamics becomes glassy, and the corresponding interaction network freezes. By modifying the epigenetic read-write process according to more biologically inspired assumptions, our polymer model with recoloring recapitulates the ultrasensitive response of epigenetic switches to perturbations and accounts for long-lived multidomain conformations, strikingly similar to the topologically associating domains observed in eukaryotic chromosomes.

  2. Switchable field-tuned control of magnetic domain wall pinning along Co microwires by 3D e-beam lithographed structures

    Energy Technology Data Exchange (ETDEWEB)

    Blanco-Roldán, C., E-mail: c.blanco@cinn.es [Departamento de Física, Universidad de Oviedo, Avenida Calvo Sotelo s/n, 33007 Oviedo (Spain); Centro de Investigación en Nanomateriales y Nanotecnología CINN (CSIC, Universidad de Oviedo), Avenida de la Vega 4-6, 33940 El Entrego (Spain); Quirós, C.; Rodriguez-Rodriguez, G.; Vélez, M.; Martín, J.I.; Alameda, J.M. [Departamento de Física, Universidad de Oviedo, Avenida Calvo Sotelo s/n, 33007 Oviedo (Spain); Centro de Investigación en Nanomateriales y Nanotecnología CINN (CSIC, Universidad de Oviedo), Avenida de la Vega 4-6, 33940 El Entrego (Spain)

    2016-02-15

    Three-dimensional magnetic circuits composed of Co microwires crossed by elevated Co bridges have been patterned on Si substrate by e-beam lithography and lift-off process. The lithographic procedure includes a double resist procedure that optimizes the shape of the bridge, so that 200 nm air gaps can be routinely achieved in between the wire and bridge elements. Microwire magnetization reversal processes have been analyzed by magneto-optical Kerr effect microscopy with different remanent bridge configurations. When the Co bridge is magnetized along the in-plane direction parallel to the wire axis, its stray field induces a marked pinning effect on domain wall propagation along the wire below it, even without being in contact. Changing the sign of the remanent state of the bridge, domain wall pinning can be selected to occur in either the ascending or descending branches of the wire hysteresis loop. Thus, these wire-bridge 3D circuits provide a simple system for tunable domain wall pinning controllable through the pre-recorded bridge remanent state. - Highlights: • Electron beam lithography is used to fabricate a tridimensional magnetic circuit. • Proposed circuit is made of a Co bridge overcrossing a non-contacted Co microwire. • Domain wall propagation can be controlled by previous magnetization of the system. • Domain wall pinning in the wire depends on the applied magnetic field sign.

  3. Light field display and 3D image reconstruction

    Science.gov (United States)

    Iwane, Toru

    2016-06-01

    Light field optics and its applications become rather popular in these days. With light field optics or light field thesis, real 3D space can be described in 2D plane as 4D data, which we call as light field data. This process can be divided in two procedures. First, real3D scene is optically reduced with imaging lens. Second, this optically reduced 3D image is encoded into light field data. In later procedure we can say that 3D information is encoded onto a plane as 2D data by lens array plate. This transformation is reversible and acquired light field data can be decoded again into 3D image with the arrayed lens plate. "Refocusing" (focusing image on your favorite point after taking a picture), light-field camera's most popular function, is some kind of sectioning process from encoded 3D data (light field data) to 2D image. In this paper at first I show our actual light field camera and our 3D display using acquired and computer-simulated light field data, on which real 3D image is reconstructed. In second I explain our data processing method whose arithmetic operation is performed not in Fourier domain but in real domain. Then our 3D display system is characterized by a few features; reconstructed image is of finer resolutions than density of arrayed lenses and it is not necessary to adjust lens array plate to flat display on which light field data is displayed.

  4. Application of multi-thread computing and domain decomposition to the 3-D neutronics Fem code Cronos

    Energy Technology Data Exchange (ETDEWEB)

    Ragusa, J.C. [CEA Saclay, Direction de l' Energie Nucleaire, Service d' Etudes des Reacteurs et de Modelisations Avancees (DEN/SERMA), 91 - Gif sur Yvette (France)

    2003-07-01

    The purpose of this paper is to present the parallelization of the flux solver and the isotopic depletion module of the code, either using Message Passing Interface (MPI) or OpenMP. Thread parallelism using OpenMP was used to parallelize the mixed dual FEM (finite element method) flux solver MINOS. Investigations regarding the opportunity of mixing parallelism paradigms will be discussed. The isotopic depletion module was parallelized using domain decomposition and MPI. An attempt at using OpenMP was unsuccessful and will be explained. This paper is organized as follows: the first section recalls the different types of parallelism. The mixed dual flux solver and its parallelization are then presented. In the third section, we describe the isotopic depletion solver and its parallelization; and finally conclude with some future perspectives. Parallel applications are mandatory for fine mesh 3-dimensional transport and simplified transport multigroup calculations. The MINOS solver of the FEM neutronics code CRONOS2 was parallelized using the directive based standard OpenMP. An efficiency of 80% (resp. 60%) was achieved with 2 (resp. 4) threads. Parallelization of the isotopic depletion solver was obtained using domain decomposition principles and MPI. Efficiencies greater than 90% were reached. These parallel implementations were tested on a shared memory symmetric multiprocessor (SMP) cluster machine. The OpenMP implementation in the solver MINOS is only the first step towards fully using the SMPs cluster potential with a mixed mode parallelism. Mixed mode parallelism can be achieved by combining message passing interface between clusters with OpenMP implicit parallelism within a cluster.

  5. Fourier domain closed-form formulas for estimation of kinetic parameters in reversible multi-compartment models

    Directory of Open Access Journals (Sweden)

    Zeng Gengsheng L

    2012-09-01

    Full Text Available Abstract Background Compared with static imaging, dynamic emission computed tomographic imaging with compartment modeling can quantify in vivo physiologic processes, providing useful information about molecular disease processes. Dynamic imaging involves estimation of kinetic rate parameters. For multi-compartment models, kinetic parameter estimation can be computationally demanding and problematic with local minima. Methods This paper offers a new perspective to the compartment model fitting problem where Fourier linear system theory is applied to derive closed-form formulas for estimating kinetic parameters for the two-compartment model. The proposed Fourier domain estimation method provides a unique solution, and offers very different noise response as compared to traditional non-linear chi-squared minimization techniques. Results The unique feature of the proposed Fourier domain method is that only low frequency components are used for kinetic parameter estimation, where the DC (i.e., the zero frequency component in the data is treated as the most important information, and high frequency components that tend to be corrupted by statistical noise are discarded. Computer simulations show that the proposed method is robust without having to specify the initial condition. The resultant solution can be fine tuned using the traditional iterative method. Conclusions The proposed Fourier-domain estimation method has closed-form formulas. The proposed Fourier-domain curve-fitting method does not require an initial condition, it minimizes a quadratic objective function and a closed-form solution can be obtained. The noise is easier to control, simply by discarding the high frequency components, and emphasizing the DC component.

  6. Spherical 3D Isotropic Wavelets

    CERN Document Server

    Lanusse, F; Starck, J -L

    2011-01-01

    Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D Spherical Fourier-Bessel (SFB) analysis in is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. The aim of this paper is to present a new formalism for a spherical 3D isotropic wavelet, i.e. one based on the Fourier-Bessel decomposition of a 3D field and accompany the formalism with a public code to perform wavelet transforms. We describe a new 3D isotropic spherical wavelet decomposition based on the undecimated wavelet transform (UWT) described in Starck et al. 2006. We also present a new fast Discrete Spherical Fourier-Bessel Transform (DSFBT) based on both a discrete Bessel Transform and the HEALPIX angular pixelisation scheme. We test the 3D wavelet transform and as a toy-application, apply a denoising algorithm in wavelet space to the Virgo large...

  7. Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach

    Directory of Open Access Journals (Sweden)

    Khader Shameer

    2010-06-01

    Full Text Available 3-dimensional domain swapping is a mechanism where two or more protein molecules form higher order oligomers by exchanging identical or similar subunits. Recently, this phenomenon has received much attention in the context of prions and neuro-degenerative diseases, due to its role in the functional regulation, formation of higher oligomers, protein misfolding, aggregation etc. While 3-dimensional domain swap mechanism can be detected from three-dimensional structures, it remains a formidable challenge to derive common sequence or structural patterns from proteins involved in swapping. We have developed a SVM-based classifier to predict domain swapping events using a set of features derived from sequence and structural data. The SVM classifier was trained on features derived from 150 proteins reported to be involved in 3D domain swapping and 150 proteins not known to be involved in swapped conformation or related to proteins involved in swapping phenomenon. The testing was performed using 63 proteins from the positive dataset and 63 proteins from the negative dataset. We obtained 76.33% accuracy from training and 73.81% accuracy from testing. Due to high diversity in the sequence, structure and functions of proteins involved in domain swapping, availability of such an algorithm to predict swapping events from sequence and structure-derived features will be an initial step towards identification of more putative proteins that may be involved in swapping or proteins involved in deposition disease. Further, the top features emerging in our feature selection method may be analysed further to understand their roles in the mechanism of domain swapping.

  8. Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

    Directory of Open Access Journals (Sweden)

    Chia-Han Chu

    Full Text Available This work presents a novel detection method for three-dimensional domain swapping (DS, a mechanism for forming protein quaternary structures that can be visualized as if monomers had "opened" their "closed" structures and exchanged the opened portion to form intertwined oligomers. Since the first report of DS in the mid 1990s, an increasing number of identified cases has led to the postulation that DS might occur in a protein with an unconstrained terminus under appropriate conditions. DS may play important roles in the molecular evolution and functional regulation of proteins and the formation of depositions in Alzheimer's and prion diseases. Moreover, it is promising for designing auto-assembling biomaterials. Despite the increasing interest in DS, related bioinformatics methods are rarely available. Owing to a dramatic conformational difference between the monomeric/closed and oligomeric/open forms, conventional structural comparison methods are inadequate for detecting DS. Hence, there is also a lack of comprehensive datasets for studying DS. Based on angle-distance (A-D image transformations of secondary structural elements (SSEs, specific patterns within A-D images can be recognized and classified for structural similarities. In this work, a matching algorithm to extract corresponding SSE pairs from A-D images and a novel DS score have been designed and demonstrated to be applicable to the detection of DS relationships. The Matthews correlation coefficient (MCC and sensitivity of the proposed DS-detecting method were higher than 0.81 even when the sequence identities of the proteins examined were lower than 10%. On average, the alignment percentage and root-mean-square distance (RMSD computed by the proposed method were 90% and 1.8Å for a set of 1,211 DS-related pairs of proteins. The performances of structural alignments remain high and stable for DS-related homologs with less than 10% sequence identities. In addition, the quality of its

  9. Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

    Science.gov (United States)

    Chu, Chia-Han; Lo, Wei-Cheng; Wang, Hsin-Wei; Hsu, Yen-Chu; Hwang, Jenn-Kang; Lyu, Ping-Chiang; Pai, Tun-Wen; Tang, Chuan Yi

    2010-10-14

    This work presents a novel detection method for three-dimensional domain swapping (DS), a mechanism for forming protein quaternary structures that can be visualized as if monomers had "opened" their "closed" structures and exchanged the opened portion to form intertwined oligomers. Since the first report of DS in the mid 1990s, an increasing number of identified cases has led to the postulation that DS might occur in a protein with an unconstrained terminus under appropriate conditions. DS may play important roles in the molecular evolution and functional regulation of proteins and the formation of depositions in Alzheimer's and prion diseases. Moreover, it is promising for designing auto-assembling biomaterials. Despite the increasing interest in DS, related bioinformatics methods are rarely available. Owing to a dramatic conformational difference between the monomeric/closed and oligomeric/open forms, conventional structural comparison methods are inadequate for detecting DS. Hence, there is also a lack of comprehensive datasets for studying DS. Based on angle-distance (A-D) image transformations of secondary structural elements (SSEs), specific patterns within A-D images can be recognized and classified for structural similarities. In this work, a matching algorithm to extract corresponding SSE pairs from A-D images and a novel DS score have been designed and demonstrated to be applicable to the detection of DS relationships. The Matthews correlation coefficient (MCC) and sensitivity of the proposed DS-detecting method were higher than 0.81 even when the sequence identities of the proteins examined were lower than 10%. On average, the alignment percentage and root-mean-square distance (RMSD) computed by the proposed method were 90% and 1.8Å for a set of 1,211 DS-related pairs of proteins. The performances of structural alignments remain high and stable for DS-related homologs with less than 10% sequence identities. In addition, the quality of its hinge loop

  10. OTDM-to-WDM Conversion of Complex Modulation Formats by Time-Domain Optical Fourier Transformation

    DEFF Research Database (Denmark)

    Palushani, Evarist; Richter, T.; Ludwig, R.

    2012-01-01

    We demonstrate the utilization of the optical Fourier transform technique for serial-to-parallel conversion of 64×10-GBd OTDM data tributaries with complex modulation formats into 50-GHz DWDM grid without loss of phase and amplitude information.......We demonstrate the utilization of the optical Fourier transform technique for serial-to-parallel conversion of 64×10-GBd OTDM data tributaries with complex modulation formats into 50-GHz DWDM grid without loss of phase and amplitude information....

  11. Extending a serial 3D two-phase CFD code to parallel execution over MPI by using the PETSc library for domain decomposition

    CERN Document Server

    Ervik, Åsmund; Müller, Bernhard

    2014-01-01

    To leverage the last two decades' transition in High-Performance Computing (HPC) towards clusters of compute nodes bound together with fast interconnects, a modern scalable CFD code must be able to efficiently distribute work amongst several nodes using the Message Passing Interface (MPI). MPI can enable very large simulations running on very large clusters, but it is necessary that the bulk of the CFD code be written with MPI in mind, an obstacle to parallelizing an existing serial code. In this work we present the results of extending an existing two-phase 3D Navier-Stokes solver, which was completely serial, to a parallel execution model using MPI. The 3D Navier-Stokes equations for two immiscible incompressible fluids are solved by the continuum surface force method, while the location of the interface is determined by the level-set method. We employ the Portable Extensible Toolkit for Scientific Computing (PETSc) for domain decomposition (DD) in a framework where only a fraction of the code needs to be a...

  12. A Polymer Model with Epigenetic Recolouring Reveals a Pathway for the de novo Establishment and 3D Organisation of Chromatin Domains

    CERN Document Server

    Michieletto, Davide; Marenduzzo, Davide

    2016-01-01

    One of the most important problems in development is how epigenetic domains can be first established, and then maintained, within cells. To address this question, we propose a framework which couples 3D chromatin folding dynamics, to a "recolouring" process modelling the writing of epigenetic marks. Because many intra-chromatin interactions are mediated by bridging proteins, we consider a "two-state" model with self-attractive interactions between two epigenetic marks which are alike (either active or inactive). This model displays a first-order-like transition between a swollen, epigenetically disordered, phase, and a compact, epigenetically coherent, chromatin globule. If the self-attraction strength exceeds a threshold, the chromatin dynamics becomes glassy, and the corresponding interaction network freezes. By modifying the epigenetic read-write process according to more biologically-inspired assumptions, our polymer model with recolouring recapitulates the ultrasensitive response of epigenetic switches t...

  13. MEMS-based handheld fourier domain Doppler optical coherence tomography for intraoperative microvascular anastomosis imaging.

    Directory of Open Access Journals (Sweden)

    Yong Huang

    Full Text Available To demonstrate the feasibility of a miniature handheld optical coherence tomography (OCT imager for real time intraoperative vascular patency evaluation in the setting of super-microsurgical vessel anastomosis.A novel handheld imager Fourier domain Doppler optical coherence tomography based on a 1.3-µm central wavelength swept source for extravascular imaging was developed. The imager was minimized through the adoption of a 2.4-mm diameter microelectromechanical systems (MEMS scanning mirror, additionally a 12.7-mm diameter lens system was designed and combined with the MEMS mirror to achieve a small form factor that optimize functionality as a handheld extravascular OCT imager. To evaluate in-vivo applicability, super-microsurgical vessel anastomosis was performed in a mouse femoral vessel cut and repair model employing conventional interrupted suture technique as well as a novel non-suture cuff technique. Vascular anastomosis patency after clinically successful repair was evaluated using the novel handheld OCT imager.With an adjustable lateral image field of view up to 1.5 mm by 1.5 mm, high-resolution simultaneous structural and flow imaging of the blood vessels were successfully acquired for BALB/C mouse after orthotopic hind limb transplantation using a non-suture cuff technique and BALB/C mouse after femoral artery anastomosis using a suture technique. We experimentally quantify the axial and lateral resolution of the OCT to be 12.6 µm in air and 17.5 µm respectively. The OCT has a sensitivity of 84 dB and sensitivity roll-off of 5.7 dB/mm over an imaging range of 5 mm. Imaging with a frame rate of 36 Hz for an image size of 1000(lateral×512(axial pixels using a 50,000 A-lines per second swept source was achieved. Quantitative vessel lumen patency, lumen narrowing and thrombosis analysis were performed based on acquired structure and Doppler images.A miniature handheld OCT imager that can be used for intraoperative evaluation of

  14. Spherical 3D isotropic wavelets

    Science.gov (United States)

    Lanusse, F.; Rassat, A.; Starck, J.-L.

    2012-04-01

    Context. Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D spherical Fourier-Bessel (SFB) analysis in spherical coordinates is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. Aims: The aim of this paper is to present a new formalism for a spherical 3D isotropic wavelet, i.e. one based on the SFB decomposition of a 3D field and accompany the formalism with a public code to perform wavelet transforms. Methods: We describe a new 3D isotropic spherical wavelet decomposition based on the undecimated wavelet transform (UWT) described in Starck et al. (2006). We also present a new fast discrete spherical Fourier-Bessel transform (DSFBT) based on both a discrete Bessel transform and the HEALPIX angular pixelisation scheme. We test the 3D wavelet transform and as a toy-application, apply a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and find we can successfully remove noise without much loss to the large scale structure. Results: We have described a new spherical 3D isotropic wavelet transform, ideally suited to analyse and denoise future 3D spherical cosmological surveys, which uses a novel DSFBT. We illustrate its potential use for denoising using a toy model. All the algorithms presented in this paper are available for download as a public code called MRS3D at http://jstarck.free.fr/mrs3d.html

  15. 一种新的三维模型水印频域算法%A New Frequency Domain 3D Method for Watermarking in Model

    Institute of Scientific and Technical Information of China (English)

    何文广; 王耀民

    2011-01-01

    In order to improve the robustness and efficiency, proposes a new frequency domain method for watermarking in 3D model. It defines a local geometric space using the topology of 3D model, and then, we extract a signal in spatial domain and transform it to a signal in frequency domain using discrete cosine transform(DCT). After that, a watermark is embedded by modifying the frequency coefficients. Finally, we transform the changed signal back to a digital signal in spatial domain, which determine the new position of the selected vertex within their related spaces. This method is simple to realize, and pretreatment is not needed during detection procedure. The experimental result shows that the algorithm guaranteed the high performance of the watermark robustness such as translation, rotation, scaling, vertex permutation, model cropping and model simplification etc. And the result also presents an evident superiority in non sentience of watermark, excellent efficiency and accuracy of detection.%从提高三维模型数字水印的鲁棒性和效率出发.提出一种新的频域水印算法。该算法利用网格拓扑结构.构建出目标顶点所处的局部几何空间.进而提取出适用于DCT变换的信息序列,修改频域系数嵌入水印:然后通过逆向DCT转回空域信号,修改目标顶点在局部几何空间中的位置得到含水印模型。算法实现简单.水印检测无需预处理.且能有效抵抗平移、旋转、缩放、剪切、网格简化等攻击。实验结果表明,该算法具有很好的鲁棒性、水印的不可感知性、水印检测高效准确的优势。

  16. Efficient fully 3D list-mode TOF PET image reconstruction using a factorized system matrix with an image domain resolution model.

    Science.gov (United States)

    Zhou, Jian; Qi, Jinyi

    2014-02-07

    A factorized system matrix utilizing an image domain resolution model is attractive in fully 3D time-of-flight PET image reconstruction using list-mode data. In this paper, we study a factored model based on sparse matrix factorization that is comprised primarily of a simplified geometrical projection matrix and an image blurring matrix. Beside the commonly-used Siddon's ray-tracer, we propose another more simplified geometrical projector based on the Bresenham's ray-tracer which further reduces the computational cost. We discuss in general how to obtain an image blurring matrix associated with a geometrical projector, and provide theoretical analysis that can be used to inspect the efficiency in model factorization. In simulation studies, we investigate the performance of the proposed sparse factorization model in terms of spatial resolution, noise properties and computational cost. The quantitative results reveal that the factorization model can be as efficient as a non-factored model, while its computational cost can be much lower. In addition we conduct Monte Carlo simulations to identify the conditions under which the image resolution model can become more efficient in terms of image contrast recovery. We verify our observations using the provided theoretical analysis. The result offers a general guide to achieve the optimal reconstruction performance based on a sparse factorization model with an image domain resolution model.

  17. A 3D, fully Eulerian, VOF-based solver to study the interaction between two fluids and moving rigid bodies using the fictitious domain method

    Science.gov (United States)

    Pathak, Ashish; Raessi, Mehdi

    2016-04-01

    We present a three-dimensional (3D) and fully Eulerian approach to capturing the interaction between two fluids and moving rigid structures by using the fictitious domain and volume-of-fluid (VOF) methods. The solid bodies can have arbitrarily complex geometry and can pierce the fluid-fluid interface, forming contact lines. The three-phase interfaces are resolved and reconstructed by using a VOF-based methodology. Then, a consistent scheme is employed for transporting mass and momentum, allowing for simulations of three-phase flows of large density ratios. The Eulerian approach significantly simplifies numerical resolution of the kinematics of rigid bodies of complex geometry and with six degrees of freedom. The fluid-structure interaction (FSI) is computed using the fictitious domain method. The methodology was developed in a message passing interface (MPI) parallel framework accelerated with graphics processing units (GPUs). The computationally intensive solution of the pressure Poisson equation is ported to GPUs, while the remaining calculations are performed on CPUs. The performance and accuracy of the methodology are assessed using an array of test cases, focusing individually on the flow solver and the FSI in surface-piercing configurations. Finally, an application of the proposed methodology in simulations of the ocean wave energy converters is presented.

  18. Efficient fully 3D list-mode TOF PET image reconstruction using a factorized system matrix with an image domain resolution model

    Science.gov (United States)

    Zhou, Jian; Qi, Jinyi

    2014-01-01

    A factorized system matrix utilizing an image domain resolution model is attractive in fully 3D TOF PET image reconstruction using list-mode data. In this paper, we study a factored model based on sparse matrix factorization that is comprised primarily of a simplified geometrical projection matrix and an image blurring matrix. Beside the commonly-used Siddon's raytracer, we propose another more simplified geometrical projector based on the Bresenham's raytracer which further reduces the computational cost. We discuss in general how to obtain an image blurring matrix associated with a geometrical projector, and provide theoretical analysis that can be used to inspect the efficiency in model factorization. In simulation studies, we investigate the performance of the proposed sparse factorization model in terms of spatial resolution, noise properties and computational cost. The quantitative results reveal that the factorization model can be as efficient as a nonfactored model such as the analytical model while its computational cost can be much lower. In addition we conduct Monte Carlo simulations to identify the conditions under which the image resolution model can become more efficient in terms of image contrast recovery. We verify our observations using the provided theoretical analysis. The result offers a general guide to achieve optimal reconstruction performance based on a sparse factorization model with an only image domain resolution model. PMID:24434568

  19. Application of Fourier Transform Profilometry in 3D-surface Reconstruction%傅立叶轮廓术在重建三维物体轮廓中的应用

    Institute of Scientific and Technical Information of China (English)

    石璧尔; 路宽; 王颖婷; 李贞安; 白净

    2011-01-01

    With the improvement of system frame and reconstruction methods in fluorescent molecules tomography (FMT). The FMT technology has been widely used as an important experimental tool in biomedical research. It is necessary to get the 3D-surface profile of the experimental object as the boundary constraints of FMT reconstruction algorithms. We proposed a new 3D-surface reconstruction method based on Fourier transform profilometry (FTP) method under the blue-purple light condition. The slice images were reconstructed using proper image processing methods, frequency spectrum analysis and filtering. The results of experiment showed that the method properly reconstructed the 3D-surface of objects and has the mm-level accuracy. Compared to other methods, this one is simple and fast. Besides its well-reconstructed, the proposed method could help monitor the behavior of the object during the experiment to ensure the correspondence of the imaging process. Furthermore, the method chooses blue-purple light section as its light source to avoid the interference towards fluorescence imaging.%随着荧光分子断层成像(FMT)技术中系统结构和重建算法的改进,FMT技术已经成为一种重要的生命医学研究手段.目前FMT算法都需要得到被测对象的三维表面轮廓作为边界约束条件.本文提出一种在蓝紫光条件下基于傅立叶变换轮廓术(FTP)方法,经图像处理、频谱分析及滤波后重构出FMT系统实验中物体的轮廓.实验结果表明,该方法具有毫米量级的重建精度.该方法能够很好地重建出物体表面轮廓,以及实时监控实验过程中物体的行为,保证了整个成像过程的对应性.此外,该法选用蓝紫光段,避免了对荧光成像的干扰.

  20. Fourier transform infrared spectroscopy studies of lipid domain formation in normal and ceramide deficient stratum corneum lipid models.

    Science.gov (United States)

    Gorcea, Mihaela; Hadgraft, Jonathan; Moore, David J; Lane, Majella E

    2012-10-01

    The current work describes thermotropic and kinetic Fourier transform infrared (FTIR) spectroscopy studies of lipid dynamics and domain formation in normal and ceramide (CER) deficient lipid samples designed as simple models of the stratum corneum (SC). For the first time, this work focuses on the time dependence of lipid reorganization and domain formation in CER deficient models. By utilizing deuterated fatty acid (FA) and simultaneously monitoring the methylene vibrational modes of both CER and FA chains these experiments follow the time evolution of lipid organization in these SC lipid models following an external stress. Kinetic and thermotropic experiments demonstrate differences in both CER and FA chain fluidity and ordered domain formation with decreased levels of CER. In the CER deficient model, the formation of CER orthorhombic domains is retarded compared to the normal model. Furthermore, there is little evidence of hexongally packed (or mixed) FA domains in the CER deficient model compared to the models of normal SC. These data demonstrate that barrier lipid organization, in terms of ceramide domain formation, is altered in the ceramide deficient model. This work highlights the successful development of an experimental methodology to study time dependent changes in lipid biophysics in simple SC model membranes and suggests this approach will prove useful for understanding some of the biophysical changes that underlie impaired physiological barrier function in diseased skin. Copyright © 2011 Elsevier B.V. All rights reserved.

  1. Influence and compensation of autocorrelation terms in depth-resolved spectroscopic Fourier-domain optical coherence tomography.

    Science.gov (United States)

    Steiner, Patrick; Meier, Christoph; Koch, Volker M

    2010-12-20

    We demonstrate depth-resolved spectral absorption measurements in the wavelength range from 750 to 850 nm using a broadband light source consisting of three spectrally shifted superluminescent light-emitting diode modules and a low-cost spectrometer-based Fourier-domain optical coherence tomography system. We present the theoretical model and experimental verification of interferences between autocorrelation terms and the signal carrying cross-correlation terms, strongly affecting the absorption measurements. A simple background subtraction, minimizing the artifacts caused by the interferences of autocorrelation and cross-correlation terms, is presented.

  2. High-speed polarization-sensitive OCT at 1060 nm using a Fourier domain mode-locked swept source

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Torzicky, Teresa; Klein, Thomas;

    2012-01-01

    , polarization-maintaining or depolarizing areas within the sample. This information can be used to distinguish retinal layers and structures with different polarization properties. High imaging speed is crucial for imaging ocular structures in vivo in order to minimize motion artifacts while acquiring...... sufficiently large datasets. Here, we demonstrate PS-OCT imaging at 350 kHz A-scan rate using a two-channel PS-OCT system in conjunction with a Fourier domain mode-locked laser. The light source spectrum spans up to 100nm around the water absorption minimum at 1060 nm. By modulating the laser pump current, we...

  3. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 2: User's manual and program listing

    Science.gov (United States)

    Bailey, R. T.; Shih, T. I.-P.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D, was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  4. In vitro observation of cartilage-degeneration progression by Fourier-domain OCT

    Science.gov (United States)

    Marx, Ulrich; Schmitt, Robert; Nebelung, Sven; Tingart, Markus; Lüring, Christian; Rath, Björn

    2012-03-01

    Optical Coherence Tomography (OCT) as emerging clinical diagnostic imaging technology for dermatology and other semitransparent tissues has shown high potential in monitoring and evaluating the inner structure of articular cartilages. Since novel therapies for the limitation of cartilage degeneration in early stages of osteoarthritis are available, the early minimal invasive diagnosis of cartilage degradation is clinically essential for further treatment options. With the advancing performance and thus diagnostic opportunities of 3D-OCT devices, we carried out a systematic study by monitoring arthrotic alterations of porcine osteochondral explants that are mechanically induced under traumatic impaction. As for in-vitro tomographic imaging we utilized two OCT devices, a Thorlabs FD-OCT device with 92KHz A-scan rate and 1310nm as central wavelength and a self-developed FD-OCT device at 840nm central wavelength. This allows the comparison in image contrast and optical penetration of cartilage tissue between these two spectral bandwidths. Further we analyzed human biopsies of articular cartilages with various degrees of osteoarthritis. The 2D and 3D OCT tomograms are characterized qualitatively regarding the inner tissue structure and quantitatively regarding the tissue absorption parameters. Therefore, we are developing image processing algorithms for the automated monitoring of cartilage tissue. A scoring system for 3D-monitoring allows the characterization of the probe volume regarding the morphological structure and tissue compactness by processing the C - scan data.

  5. GPU-accelerated non-uniform fast Fourier transform-based compressive sensing spectral domain optical coherence tomography.

    Science.gov (United States)

    Xu, Daguang; Huang, Yong; Kang, Jin U

    2014-06-16

    We implemented the graphics processing unit (GPU) accelerated compressive sensing (CS) non-uniform in k-space spectral domain optical coherence tomography (SD OCT). Kaiser-Bessel (KB) function and Gaussian function are used independently as the convolution kernel in the gridding-based non-uniform fast Fourier transform (NUFFT) algorithm with different oversampling ratios and kernel widths. Our implementation is compared with the GPU-accelerated modified non-uniform discrete Fourier transform (MNUDFT) matrix-based CS SD OCT and the GPU-accelerated fast Fourier transform (FFT)-based CS SD OCT. It was found that our implementation has comparable performance to the GPU-accelerated MNUDFT-based CS SD OCT in terms of image quality while providing more than 5 times speed enhancement. When compared to the GPU-accelerated FFT based-CS SD OCT, it shows smaller background noise and less side lobes while eliminating the need for the cumbersome k-space grid filling and the k-linear calibration procedure. Finally, we demonstrated that by using a conventional desktop computer architecture having three GPUs, real-time B-mode imaging can be obtained in excess of 30 fps for the GPU-accelerated NUFFT based CS SD OCT with frame size 2048(axial) × 1,000(lateral).

  6. Space-time domain solutions of the wave equation by a non-singular boundary integral method and Fourier transform.

    Science.gov (United States)

    Klaseboer, Evert; Sepehrirahnama, Shahrokh; Chan, Derek Y C

    2017-08-01

    The general space-time evolution of the scattering of an incident acoustic plane wave pulse by an arbitrary configuration of targets is treated by employing a recently developed non-singular boundary integral method to solve the Helmholtz equation in the frequency domain from which the space-time solution of the wave equation is obtained using the fast Fourier transform. The non-singular boundary integral solution can enforce the radiation boundary condition at infinity exactly and can account for multiple scattering effects at all spacings between scatterers without adverse effects on the numerical precision. More generally, the absence of singular kernels in the non-singular integral equation confers high numerical stability and precision for smaller numbers of degrees of freedom. The use of fast Fourier transform to obtain the time dependence is not constrained to discrete time steps and is particularly efficient for studying the response to different incident pulses by the same configuration of scatterers. The precision that can be attained using a smaller number of Fourier components is also quantified.

  7. The properties of SIRT, TVM, and DART for 3D imaging of tubular domains in nanocomposite thin-films and sections.

    Science.gov (United States)

    Chen, Delei; Goris, Bart; Bleichrodt, Folkert; Mezerji, Hamed Heidari; Bals, Sara; Batenburg, Kees Joost; de With, Gijsbertus; Friedrich, Heiner

    2014-12-01

    In electron tomography, the fidelity of the 3D reconstruction strongly depends on the employed reconstruction algorithm. In this paper, the properties of SIRT, TVM and DART reconstructions are studied with respect to having only a limited number of electrons available for imaging and applying different angular sampling schemes. A well-defined realistic model is generated, which consists of tubular domains within a matrix having slab-geometry. Subsequently, the electron tomography workflow is simulated from calculated tilt-series over experimental effects to reconstruction. In comparison with the model, the fidelity of each reconstruction method is evaluated qualitatively and quantitatively based on global and local edge profiles and resolvable distance between particles. Results show that the performance of all reconstruction methods declines with the total electron dose. Overall, SIRT algorithm is the most stable method and insensitive to changes in angular sampling. TVM algorithm yields significantly sharper edges in the reconstruction, but the edge positions are strongly influenced by the tilt scheme and the tubular objects become thinned. The DART algorithm markedly suppresses the elongation artifacts along the beam direction and moreover segments the reconstruction which can be considered a significant advantage for quantification. Finally, no advantage of TVM and DART to deal better with fewer projections was observed.

  8. The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.

    Science.gov (United States)

    Roche, Daniel B; Buenavista, Maria T; Tetchner, Stuart J; McGuffin, Liam J

    2011-07-01

    The IntFOLD server is a novel independent server that integrates several cutting edge methods for the prediction of structure and function from sequence. Our guiding principles behind the server development were as follows: (i) to provide a simple unified resource that makes our prediction software accessible to all and (ii) to produce integrated output for predictions that can be easily interpreted. The output for predictions is presented as a simple table that summarizes all results graphically via plots and annotated 3D models. The raw machine readable data files for each set of predictions are also provided for developers, which comply with the Critical Assessment of Methods for Protein Structure Prediction (CASP) data standards. The server comprises an integrated suite of five novel methods: nFOLD4, for tertiary structure prediction; ModFOLD 3.0, for model quality assessment; DISOclust 2.0, for disorder prediction; DomFOLD 2.0 for domain prediction; and FunFOLD 1.0, for ligand binding site prediction. Predictions from the IntFOLD server were found to be competitive in several categories in the recent CASP9 experiment. The IntFOLD server is available at the following web site: http://www.reading.ac.uk/bioinf/IntFOLD/.

  9. An iterative solver for the 3D Helmholtz equation

    Science.gov (United States)

    Belonosov, Mikhail; Dmitriev, Maxim; Kostin, Victor; Neklyudov, Dmitry; Tcheverda, Vladimir

    2017-09-01

    We develop a frequency-domain iterative solver for numerical simulation of acoustic waves in 3D heterogeneous media. It is based on the application of a unique preconditioner to the Helmholtz equation that ensures convergence for Krylov subspace iteration methods. Effective inversion of the preconditioner involves the Fast Fourier Transform (FFT) and numerical solution of a series of boundary value problems for ordinary differential equations. Matrix-by-vector multiplication for iterative inversion of the preconditioned matrix involves inversion of the preconditioner and pointwise multiplication of grid functions. Our solver has been verified by benchmarking against exact solutions and a time-domain solver.

  10. Fourier-Domain Analysis of Hydriding Kinetics Using Pneumato-Chemical Impedance Spectroscopy

    Directory of Open Access Journals (Sweden)

    P. Millet

    2007-10-01

    Full Text Available Analysis of phase transformation processes observed in hydrogen absorbing materials (pure metals, alloys, or compounds is still a matter of active research. Using pneumato-chemical impedance spectroscopy (PIS, it is now possible to analyze the mechanism of hydriding reactions induced by the gas phase. Experimental impedance diagrams, measured on activated LaNi5 in single- and two-phase domains, are reported in this paper. It is shown that their shape is mostly affected by the slope of the isotherm at the measurement point. By considering the details of the multistep reaction paths involved in the hydriding reaction, model impedance equations have been derived for single- and two-phase domains, and fitted to experimental impedance diagrams. The possibility of separately measuring surface and phase transformation resistances, hydrogen diffusion coefficient, and hydrogen solubility in each composition domain is discussed.

  11. Approximating the trace of iterative solutions at the interfaces with Nonuniform Fourier transform and singular value decomposition for cost-effectively accelerating the convergence of Schwarz domain decomposition

    Directory of Open Access Journals (Sweden)

    Tromeur-Dervout Damien

    2013-12-01

    Full Text Available This paper deals with the representation of the trace of iterative Schwarz solutions at the interfaces of domain decomposition to approximate adaptively the interface error operator. This allows to build a cost-effectively accelerating of the convergence of the iterative method by extending to the vectorial case the Aitken’s accelerating convergence technique. The first representation is based on the building of a nonuniform discrete Fourier transform defined on a non-regular grid. We show how to construct a Fourier basis of dimension N+1 on this grid by building numerically a sesquilinear form, its exact accuracy to represent trigonometric polynomials of degree N / 2, and its spectral approximation property that depends on the continuity of the function to approximate. The decay of Fourier-like modes of the approximation of the trace of the iterative solution at the interfaces provides an estimate to adaptively select the modes involved in the acceleration. The drawback of this approach is to be dependent on the continuity of the trace of the iterated solution at the interfaces. The second representation, purely algebraic, uses a singular value decomposition of the trace of the iterative solution at the interfaces to provide a set of orthogonal singular vectors of which the associated singular values provide an estimate to adapt the acceleration. The resulting Aitken-Schwarz methodology is then applied to large scale computing on 3D linear Darcy flow where the permeability follows a log normal random distribution. Cet acte traite de la représentation des solutions itérées aux interfaces de la méthode de décomposition de domaine de type Schwarz afin d’approximer de manière adaptative son opérateur d’erreur aux interfaces des sous domaines. Ceci permet de construire de manière économique l’accélération de la convergence de la méthode itérative en étendant la technique d’accélération de la convergence de Aitken au cas

  12. The properties of SIRT, TVM, and DART for 3D imaging of tubular domains in nanocomposite thin-films and sections

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Delei [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands); Dutch Polymer Institute (DPI), P.O. Box 902, 5600 AX Eindhoven (Netherlands); Goris, Bart [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Bleichrodt, Folkert [Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); Mezerji, Hamed Heidari; Bals, Sara [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Batenburg, Kees Joost [Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); With, Gijsbertus de [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands); Friedrich, Heiner, E-mail: h.friedrich@tue.nl [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands)

    2014-12-15

    In electron tomography, the fidelity of the 3D reconstruction strongly depends on the employed reconstruction algorithm. In this paper, the properties of SIRT, TVM and DART reconstructions are studied with respect to having only a limited number of electrons available for imaging and applying different angular sampling schemes. A well-defined realistic model is generated, which consists of tubular domains within a matrix having slab-geometry. Subsequently, the electron tomography workflow is simulated from calculated tilt-series over experimental effects to reconstruction. In comparison with the model, the fidelity of each reconstruction method is evaluated qualitatively and quantitatively based on global and local edge profiles and resolvable distance between particles. Results show that the performance of all reconstruction methods declines with the total electron dose. Overall, SIRT algorithm is the most stable method and insensitive to changes in angular sampling. TVM algorithm yields significantly sharper edges in the reconstruction, but the edge positions are strongly influenced by the tilt scheme and the tubular objects become thinned. The DART algorithm markedly suppresses the elongation artifacts along the beam direction and moreover segments the reconstruction which can be considered a significant advantage for quantification. Finally, no advantage of TVM and DART to deal better with fewer projections was observed. - Highlights: • Dose and tilt-scheme dependence of SIRT, TVM and DART tomograms are quantified. • SIRT is the most stable method and insensitive to changes in angular sampling. • TVM significantly reduces noise but objects become thinned. • DART markedly suppresses the elongation artifacts. • No advantage of TVM and DART for fewer projections is observed.

  13. Theoretical analysis and numerical calculation of 3D trapped field distribution of single domain SmBCO bulks by Sm+011 TSIG methods

    Science.gov (United States)

    Yang, Wanmin; Yang, Pengtao; Wang, Yanan; Li, Qiang

    2017-09-01

    The lower critical temperature Tc and critical current density Jc are serious weaknesses of SmBCO bulk superconductors fabricated in air for practical applications, because of the Sm3+/Ba2+ solid solution in Sm1+xBa2-xCu3Oy crystals. In this paper, high quality single domain SmBCO bulk samples S1 (ϕ20 mm) and S2 (ϕ32 mm) have been fabricated in air by a new Sm+011 TSIG method. The trapped field of the samples is 0.8 T and 1.15 T at liquid nitrogen temperature for the samples S1 and S2 respectively, which is the strongest trapped field of the SmBCO samples fabricated in air today. The theoretical formula for 3D trapped field distribution have been derived for a cylindrical model with uniformly distributed critical current density Jc based on the Biot Savart law; the cylindrical sample is divided into a series of concentric rings with the same width and thickness, the trapped field of the samples is the summation of magnetic field produced by all the rings, while the magnetic field generated by each ring was worked out by trapezoidal numerical integration based on the Biot Savart law with the critical current density Jc of the samples. It is found that the calculated field of the samples is well in agreement with the experimental results if the reasonable Jc of the samples is adopted. The theoretical calculation result also indicates that the larger the diameter and the thickness of the samples, the stronger the trapped flux density, but the optimal diameter/thickness ratio should be of a reasonable value around one, and it is not so good to fabricated samples with too larger diameter or thickness for practical applications.

  14. 1-D Directional Filter Based Texture Descriptor in Fractional Fourier Domain

    Institute of Scientific and Technical Information of China (English)

    Kai Tian; Hongzhang Jin; Liying Zheng

    2015-01-01

    Texture analysis is a fundamental field in computer vision. However, it is also a particularly difficult problem for no universal mathematical model of real world textures. By extending a new application of the fractional Fourier transform ( FrFT) in the field of texture analysis, this paper proposes an FrFT⁃based method for describing textures. Firstly, based on the Radon⁃Wigner transform, 1⁃D directional FrFT filters are designed to two types of texture features, i.e., the coarseness and directionality. Then, the frequencies with maximum and median amplitudes of the FrFT of the input signal are regarded as the output of the 1⁃D directional FrFT filter. Finally, the mean and the standard deviation are used to compose of the feature vector. Compared to the WD⁃based method, three benefits can be achieved with the proposed FrFT⁃based method, i. e., less memory size, lower computational load, and less disturbed by the cross⁃terms. The proposed method has been tested on 16 standard texture images. The experimental results show that the proposed method is superior to the popular Gabor filtering⁃based method.

  15. Fourier domain low coherence interferometry for detection of early colorectal cancer development in the AOM rat model

    Science.gov (United States)

    Robles, Francisco E.; Zhu, Yizheng; Lee, Jin; Sharma, Sheela; Wax, Adam

    2011-03-01

    We present Fourier domain low coherence interferometry (fLCI) applied to the detection of preneoplastic changes in the colon using the ex-vivo azoxymethane (AOM) rat carcinogenesis model. fLCI measures depth resolved spectral oscillations, also known as local oscillations, resulting from coherent fields induced by the scattering of cell nuclei. The depth resolution of fLCI permits nuclear morphology measurements within thick tissues, making the technique sensitive to the earliest stages of precancerous development. To achieve depth resolved spectroscopic analysis, we use the dual window method, which obtains simultaneously high spectral and depth resolution and yields access to the local oscillations. The results show highly statistically significant differences between the AOM-treated and control group samples. Further, the results suggest that fLCI may be used to detect the field effect of carcinogenesis, in addition to identifying specific areas where more advanced neoplastic development has occurred.

  16. [Applying graphics processing unit in real-time signal processing and visualization of ophthalmic Fourier-domain OCT system].

    Science.gov (United States)

    Liu, Qiaoyan; Li, Yuejie; Xu, Qiujing; Zhao, Jincheng; Wang, Liwei; Gao, Yonghe

    2013-01-01

    This investigation introduces GPU (Graphics Processing Unit)- based CUDA (Compute Unified Device Architecture) technology into signal processing of ophthalmic FD-OCT (Fourier-Domain Optical Coherence Tomography) imaging system, can realize parallel data processing, using CUDA to optimize relevant operations and algorithms, in order to solve the technical bottlenecks that currently affect ophthalmic real-time imaging in OCT system. Laboratory results showed that with GPU as a general parallel computing processor, the speed of imaging data processing using GPU+CPU mode is more than dozens times faster than traditional CPU platform based serial computing and imaging mode when executing the same data processing, which reaches the clinical requirements for two dimensional real-time imaging.

  17. Noncontact common-path Fourier domain optical coherence tomography method for in vitro intraocular lens power measurement

    Science.gov (United States)

    Huang, Yong; Zhang, Kang; Kang, Jin U.; Calogero, Don; James, Robert H.; Ilev, Ilko K.

    2011-12-01

    We propose a novel common-path Fourier domain optical coherence tomography (CP-FD-OCT) method for noncontact, accurate, and objective in vitro measurement of the dioptric power of intraocular lenses (IOLs) implants. The CP-FD-OCT method principle of operation is based on simple two-dimensional scanning common-path Fourier domain optical coherence tomography. By reconstructing the anterior and posterior IOL surfaces, the radii of the two surfaces, and thus the IOL dioptric power are determined. The CP-FD-OCT design provides high accuracy of IOL surface reconstruction. The axial position detection accuracy is calibrated at 1.22 μm in balanced saline solution used for simulation of in situ conditions. The lateral sampling rate is controlled by the step size of linear scanning systems. IOL samples with labeled dioptric power in the low-power (5D), mid-power (20D and 22D), and high-power (36D) ranges under in situ conditions are tested. We obtained a mean power of 4.95/20.11/22.09/36.25 D with high levels of repeatability estimated by a standard deviation of 0.10/0.18/0.2/0.58 D and a relative error of 2/0.9/0.9/1.6%, based on five measurements for each IOL respectively. The new CP-FD-OCT method provides an independent source of IOL power measurement data as well as information for evaluating other optical properties of IOLs such as refractive index, central thickness, and aberrations.

  18. Automatic online spectral calibration of Fourier-domain OCT for robotic surgery

    Science.gov (United States)

    Liu, Xuan; Balicki, Marcin; Taylor, Russell H.; Kang, Jin U.

    2011-03-01

    We present a new automatic spectral calibration (ASC) method for spectral Domain optical coherence tomography (SD-OCT). Our ASC method calibrates the spectral mapping of the spectrometer in SD-OCT, and does not require external calibrating light source or a commercial spectral analyzer. The ASC method simultaneously calibrates the physical pixel spacing of the A-scan in static and dynamic environments. Experimental results show that the proposed ASC method can provide satisfactory calibration for SD-OCT to achieve high axial resolution and high ranging accuracy, without increasing hardware complexity.

  19. In vivo sweat film layer thickness measured with Fourier-domain optical coherence tomography

    CSIR Research Space (South Africa)

    Jonathan, E

    2008-01-01

    Full Text Available and pore can be located. In addition, other measure- ments of interest, for example, thickness of the SCL, diameter of an open sweat pore or depth position of DEJ can be performed. References [1] Weller AS. Body temperature and its regulation. Physiol... of tissue microstructure is achieved from operating in the optical low-coherence interferometry domain. 1. Introduction Sweat secretion in humans is accepted as a mechanism by which the body cools off [1,2]. Interest in sweat secretion in humans’ dates...

  20. 1.28 Tbit/s/channel single-polarization DQPSK transmission over 525 km using ultrafast time-domain optical Fourier transformation

    DEFF Research Database (Denmark)

    Guan, P.; Mulvad, Hans Christian Hansen; Tomiyama, Y.;

    2010-01-01

    A single-channel 1.28 Tbit/s transmission over 525 km is demonstrated for the first time with a single-polarization DQPSK signal. Ultrafast time-domain optical Fourier transformation is successfully applied to DQPSK signals and results in improved performance and increased system margin.......A single-channel 1.28 Tbit/s transmission over 525 km is demonstrated for the first time with a single-polarization DQPSK signal. Ultrafast time-domain optical Fourier transformation is successfully applied to DQPSK signals and results in improved performance and increased system margin....

  1. 3D video

    CERN Document Server

    Lucas, Laurent; Loscos, Céline

    2013-01-01

    While 3D vision has existed for many years, the use of 3D cameras and video-based modeling by the film industry has induced an explosion of interest for 3D acquisition technology, 3D content and 3D displays. As such, 3D video has become one of the new technology trends of this century.The chapters in this book cover a large spectrum of areas connected to 3D video, which are presented both theoretically and technologically, while taking into account both physiological and perceptual aspects. Stepping away from traditional 3D vision, the authors, all currently involved in these areas, provide th

  2. 3D Animation Essentials

    CERN Document Server

    Beane, Andy

    2012-01-01

    The essential fundamentals of 3D animation for aspiring 3D artists 3D is everywhere--video games, movie and television special effects, mobile devices, etc. Many aspiring artists and animators have grown up with 3D and computers, and naturally gravitate to this field as their area of interest. Bringing a blend of studio and classroom experience to offer you thorough coverage of the 3D animation industry, this must-have book shows you what it takes to create compelling and realistic 3D imagery. Serves as the first step to understanding the language of 3D and computer graphics (CG)Covers 3D anim

  3. Between-event and between-station variability observed in the Fourier and response spectra domains: comparison with seismological models

    Science.gov (United States)

    Bindi, D.; Spallarossa, D.; Pacor, F.

    2017-08-01

    In this study, we analyse a regional data set composed by about 9000 waveforms from 231 earthquakes in the magnitude range from 3 to 6 and recorded in central Italy in the time period 2008-2013. We derive a seismological model whose source, attenuation and site parameters are used to explain the ground motion variability associated with a set of ground motion prediction equation (GMPE) calibrated ad hoc for both Fourier and acceleration response spectra. The main results are the following: (1) the between-event residuals δΒe show a clear dependence on the stress drop for frequencies above 2 Hz; (2) the standard deviation τ of δΒe is strongly reduced (up to 80 per cent) by introducing in the functional form the stress drop values estimated from each source spectrum; (3) the standard deviation τ depends on the magnitude scale used to calibrate the GMPE: while the moment magnitude better describes the source variability at low frequency, the local magnitude better capture the source-related ground motion variability at frequencies larger than 2 Hz; (4) for frequencies higher than 10 Hz, the observed increase of τ with frequency correlate well with the attenuation parameter ksource, computed from the high-frequency slope of the source spectra. Regarding the station-to-station residuals δS2S, their frequency dependency is in good agreement with the site amplifications extracted from the S-wave spectra. Finally, while the overall dependences of the ground motion variability on seismological parameters are similar when observed either in the Fourier or in the response spectra domains (e.g. the dependency of the between event on stress drop), differences in the results suggest that the response spectra do not allow to fully capture the ground motion variability, as well as the site amplifications, at high frequencies.

  4. The properties of SIRT, TVM, and DART for 3D imaging of tubular domains in nanocomposite thin-films and sections

    NARCIS (Netherlands)

    Chen, D.; Goris, B.; Bleichrodt, F.; Mezerji, H.H.; Bals, S.; Batenburg, K.J.; With, G. de; Friedrich, H.

    2014-01-01

    In electron tomography, the fidelity of the 3D reconstruction strongly depends on the employed reconstruction algorithm. In this paper, the properties of SIRT, TVM and DART reconstructions are studied with respect to having only a limited number of electrons available for imaging and applying differ

  5. ISO land administration domain model and LandXML, in the development of digital survey plan lodgement for 3D cadastre in Australia

    NARCIS (Netherlands)

    Karki, S.; Thompson, R.J.; McDougall, K.; Cumerford, N.; Van Oosterom, P.J.M.

    2011-01-01

    The aim of this paper is to explore the implementation issues of 3D Cadastre in Queensland, Australia, which is presently moving towards a full digital lodgement of surveying information, with a focus on validation rules. In Queensland the Electronic Access for Registry Lodgement (EARL) project has

  6. High Time-Resolution 640-Gb/s Clock Recovery Using Time-Domain Optical Fourier Transformation and Narrowband Optical Filter

    DEFF Research Database (Denmark)

    Guan, P.; Mulvad, Hans Christian Hansen; Kasai, K.

    2010-01-01

    We present a novel scheme for subharmonic clock recovery from an optical time-division-multiplexing signal using time-domain optical Fourier transformation and a narrowband optical filter. High-resolution 640-Gb/s clock recovery is successfully demonstrated with no pattern dependence. The clock...

  7. Ultra-high-speed optical serial-to-parallel data conversion by time-domain optical Fourier transformation in a silicon nanowire

    DEFF Research Database (Denmark)

    Mulvad, Hans Christian Hansen; Palushani, Evarist; Hu, Hao

    2011-01-01

    We demonstrate conversion from 64 × 10 Gbit/s optical timedivision multiplexed (OTDM) data to dense wavelength division multiplexed (DWDM) data with 25 GHz spacing. The conversion is achieved by time-domain optical Fourier transformation (OFT) based on four-wave mixing (FWM) in a 3.6 mm long...

  8. Interstudy reproducibility of the second generation, Fourier domain optical coherence tomography in patients with coronary artery disease and comparison with intravascular ultrasound: A study applying automated contour detection

    NARCIS (Netherlands)

    Z. Jamil (Z.); G.J. Tearney (Guillermo); N. Bruining (Nico); K. Sihan (Kenji); G. van Soest (Gijs); J.M.R. Ligthart (Jürgen); R.T. van Domburg (Ron); B.E. Bouma (Brett); E.S. Regar (Eveline)

    2013-01-01

    textabstractRecently, Fourier domain OCT (FD-OCT) has been introduced for clinical use. This approach allows in vivo, high resolution (15 micron) imaging with very fast data acquisition, however, it requires brief flushing of the lumen during imaging. The reproducibility of such fast data acquisitio

  9. Quantifying height of ultraprecisely machined steps on oxygen-free electronic copper disc using Fourier-domain short coherence interferometry

    CERN Document Server

    Montonen, Risto; Hæggström, Edward; Österberg, Kenneth

    2016-01-01

    The internal shape and alignment of accelerator discs is crucial for efficient collider operation at the future compact linear collider (CLIC). We applied a calibrated custom-made Fourier-domain short coherence interferometer to measure the height of 40 and 60μm60  μm ultraprecisely turned steps (surface roughness Ra≤25nmRa≤25  nm, flatness ≤2μm≤2  μm) on an oxygen-free electronic copper disc. The step heights were quantified to be (39.6±2.6)μm(39.6±2.6)  μm and (59.0±2.3)μm(59.0±2.3)  μm. The uncertainties are quoted at 95% confidence level and include contributions from calibration, refractive index of air, cosine error, surface roughness, and thermal expansion in comparison to standard temperature of 20°C. The results were verified by measuring the same steps using a commercial white light interferometer Veeco—NT3300. Our instrument can ensure that the accelerator discs of the CLIC are aligned within the tolerance required for efficient collider operation.

  10. Fourier-Domain Optical Coherence Tomography for Monitoring the Lower Tear Meniscus in Dry Eye after Acupuncture Treatment

    Directory of Open Access Journals (Sweden)

    Tong Lin

    2015-01-01

    Full Text Available Dry eye is highly prevalent and has a significant impact on quality of life. Acupuncture was found to be effective to treat dry eye. However, little was known about the effect of acupuncture on different subtypes of dry eye. The objective of this study was to investigate the applicability of tear meniscus assessment by Fourier-domain optical coherence tomography in the evaluation of acupuncture treatment response in dry eye patients and to explore the effect of acupuncture on different subtypes of dry eye compared with artificial tear treatment. A total of 108 dry eye patients were randomized into acupuncture or artificial tear group. Each group was divided into three subgroups including lipid tear deficiency (LTD, Sjögren syndrome dry eye (SSDE, and non-Sjögren syndrome dry eye (Non-SSDE for data analysis. After 4-week treatment, the low tear meniscus parameters including tear meniscus height (TMH, tear meniscus depth (TMD, and tear meniscus area (TMA in the acupuncture group increased significantly for the LTD and Non-SSDE subgroups compared with both the baseline and the control groups (all P values < 0.05, but not for the SSDE. Acupuncture provided a measurable improvement of the tear meniscus dimensions for the Non-SSDE and LTD patients, but not for the SSDE patients.

  11. Comparison of central corneal thickness measurements using optical low-coherence reflectometry, Fourier domain optical coherence tomography, and Scheimpflug camera

    Directory of Open Access Journals (Sweden)

    Saban Gonul

    2014-12-01

    Full Text Available Purpose: To compare the results of central corneal thickness (CCT measurements obtained using optical low-coherence reflectometry (OLCR, Fourier domain optical coherence tomography (FD-OCT, and a Scheimpflug camera (SC, combined with Placido corneal topography. Methods: A total of 25 healthy subjects were enrolled in the present study, and one eye of each subject was included. A detailed ophthalmic examination was performed in all cases following CCT measurements with OLCR, FD-OCT, and SC. The results were compared using an ANOVA test. Bland-Altman analysis was used to demonstrate agreement between methods. Intra-examiner repeatability was assessed by using intraclass correlation coefficients (ICCs. Results: Statistically significant differences were observed between the results of the CCT measurements obtained using the three different devices (p=0.009. Significant correlations were found between OLCR and FD-OCT (r=0.97; p0.98. Conclusion: Although the results of CCT measurements obtained from these three devices were highly correlated with one another and the mean differences between instruments were comparable with the reported diurnal CCT fluctuation, the measurements are not directly interchangeable in clinical practice because of the wide LOA values.

  12. Assessment of Corneal Epithelial Thickness in Asymmetric Keratoconic Eyes and Normal Eyes Using Fourier Domain Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    S. Catalan

    2016-01-01

    Full Text Available Purpose. To compare the characteristics of asymmetric keratoconic eyes and normal eyes by Fourier domain optical coherence tomography (OCT corneal mapping. Methods. Retrospective corneal and epithelial thickness OCT data for 74 patients were compared in three groups of eyes: keratoconic (n=22 and normal fellow eyes (n=22 in patients with asymmetric keratoconus and normal eyes (n=104 in healthy subjects. Areas under the curve (AUC of receiver operator characteristic (ROC curves for each variable were compared across groups to indicate their discrimination capacity. Results. Three variables were found to differ significantly between fellow eyes and normal eyes (all p<0.05: minimum corneal thickness, thinnest corneal point, and central corneal thickness. These variables combined showed a high discrimination power to differentiate fellow eyes from normal eyes indicated by an AUC of 0.840 (95% CI: 0.762–0.918. Conclusions. Our findings indicate that topographically normal fellow eyes in patients with very asymmetric keratoconus differ from the eyes of healthy individuals in terms of their corneal epithelial and pachymetry maps. This type of information could be useful for an early diagnosis of keratoconus in topographically normal eyes.

  13. Quantifying height of ultraprecisely machined steps on oxygen-free electronic copper disc using Fourier-domain short coherence interferometry

    Science.gov (United States)

    Montonen, Risto; Kassamakov, Ivan; Hæggström, Edward; Österberg, Kenneth

    2016-01-01

    The internal shape and alignment of accelerator discs is crucial for efficient collider operation at the future compact linear collider (CLIC). We applied a calibrated custom-made Fourier-domain short coherence interferometer to measure the height of 40 and 60 μm ultraprecisely turned steps (surface roughness Ra≤25 nm, flatness ≤2 μm) on an oxygen-free electronic copper disc. The step heights were quantified to be (39.6±2.6) μm and (59.0±2.3) μm. The uncertainties are quoted at 95% confidence level and include contributions from calibration, refractive index of air, cosine error, surface roughness, and thermal expansion in comparison to standard temperature of 20°C. The results were verified by measuring the same steps using a commercial white light interferometer Veeco-NT3300. Our instrument can ensure that the accelerator discs of the CLIC are aligned within the tolerance required for efficient collider operation.

  14. Combining Gabor and Talbot bands techniques to enhance the sensitivity with depth in Fourier domain optical coherence tomography

    Science.gov (United States)

    Bradu, Adrian; Marques, Manuel J.; Bouchal, Petr; Podoleanu, Adrian Gh.

    2013-03-01

    The purpose of this study was to show how to favorably mix two e_ects to improve the sensitivity with depth in Fourier domain optical coherence tomography (OCT): Talbot bands (TB) and Gabor-based fusion (GF) technique. TB operation is achieved by directing the two beams, from the object arm and from the reference arm in the OCT interferometer, along parallel separate paths towards the spectrometer. By changing the lateral gap between the two beams in their path towards the spectrometer, the position for the maximum sensitivity versus the optical path difference in the interferometer is adjusted. For five values of the focus position, the gap between the two beams is readjusted to reach maximum sensitivity. Then, similar to the procedure employed in the GF technique, a composite image is formed by edging together the parts of the five images that exhibited maximum brightness. The combined procedure, TB/GF is examined for four different values of the beam diameters of the two beams. Also we demonstrate volumetric FD-OCT images with mirror term attenuation and sensitivity profile shifted towards higher OPD values by applying a Talbot bands configuration.

  15. An analytic, Fourier domain description of shear wave propagation in a viscoelastic medium using asymmetric Gaussian sources.

    Science.gov (United States)

    Rouze, Ned C; Palmeri, Mark L; Nightingale, Kathryn R

    2015-08-01

    Recent measurements of shear wave propagation in viscoelastic materials have been analyzed by constructing the two-dimensional Fourier transform (2D-FT) of the spatial-temporal shear wave signal and using an analysis procedure derived under the assumption the wave is described as a plane wave, or as the asymptotic form of a wave expanding radially from a cylindrically symmetric source. This study presents an exact, analytic expression for the 2D-FT description of shear wave propagation in viscoelastic materials following asymmetric Gaussian excitations and uses this expression to evaluate the bias in 2D-FT measurements obtained using the plane or cylindrical wave assumptions. A wide range of biases are observed depending on specific values of frequency, aspect ratio R of the source asymmetry, and material properties. These biases can be reduced significantly by weighting the shear wave signal in the spatial domain to correct for the geometric spreading of the shear wavefront using a factor of x(p). The optimal weighting power p is found to be near the theoretical value of 0.5 for the case of a cylindrical source with R = 1, and decreases for asymmetric sources with R > 1.

  16. Development of the Complex General Linear Model in the Fourier Domain: Application to fMRI Multiple Input-Output Evoked Responses for Single Subjects

    Directory of Open Access Journals (Sweden)

    Daniel E. Rio

    2013-01-01

    Full Text Available A linear time-invariant model based on statistical time series analysis in the Fourier domain for single subjects is further developed and applied to functional MRI (fMRI blood-oxygen level-dependent (BOLD multivariate data. This methodology was originally developed to analyze multiple stimulus input evoked response BOLD data. However, to analyze clinical data generated using a repeated measures experimental design, the model has been extended to handle multivariate time series data and demonstrated on control and alcoholic subjects taken from data previously analyzed in the temporal domain. Analysis of BOLD data is typically carried out in the time domain where the data has a high temporal correlation. These analyses generally employ parametric models of the hemodynamic response function (HRF where prewhitening of the data is attempted using autoregressive (AR models for the noise. However, this data can be analyzed in the Fourier domain. Here, assumptions made on the noise structure are less restrictive, and hypothesis tests can be constructed based on voxel-specific nonparametric estimates of the hemodynamic transfer function (HRF in the Fourier domain. This is especially important for experimental designs involving multiple states (either stimulus or drug induced that may alter the form of the response function.

  17. IZDELAVA TISKALNIKA 3D

    OpenAIRE

    Brdnik, Lovro

    2015-01-01

    Diplomsko delo analizira trenutno stanje 3D tiskalnikov na trgu. Prikazan je razvoj in principi delovanja 3D tiskalnikov. Predstavljeni so tipi 3D tiskalnikov, njihove prednosti in slabosti. Podrobneje je predstavljena zgradba in delovanje koračnih motorjev. Opravljene so meritve koračnih motorjev. Opisana je programska oprema za rokovanje s 3D tiskalniki in komponente, ki jih potrebujemo za izdelavo. Diploma se oklepa vprašanja, ali je izdelava 3D tiskalnika bolj ekonomična kot pa naložba v ...

  18. Limited Feedback for 3D Massive MIMO under 3D-UMa and 3D-UMi Scenarios

    Directory of Open Access Journals (Sweden)

    Zheng Hu

    2015-01-01

    Full Text Available For three-dimensional (3D massive MIMO utilizing the uniform rectangular array (URA in the base station (BS, we propose a limited feedback transmission scheme in which the channel state information (CSI feedback operations for horizontal domain and vertical domain are separate. Compared to the traditional feedback scheme, the scheme can reduce the feedback overhead, code word index search complexity, and storage requirement. Also, based on the zenith of departure angle (ZoD distribution in 3D-Urban Macro Cell (3D-UMa and 3D-Urban Micro Cell (3D-UMi scenarios, we propose the angle quantization codebook for vertical domain, while the codebook of long term evolution-advanced (LTE-Advanced is still adopted in horizontal domain to preserve compatibility with the LTE-Advanced. Based on the angle quantization codebook, the subsampled 3-bit DFT codebook is designed for vertical domain. The system-level simulation results reveal that, to compromise the feedback overhead and system performance, 2-bit codebook for 3D-UMa scenario and 3-bit codebook for 3D-UMi scenario can meet requirements in vertical domain. The feedback period for vertical domain can also be extended appropriately to reduce the feedback overhead.

  19. Three-dimensional full-range complex Fourier domain optical coherence tomography for in-vivo volumetric imaging of human skin

    Science.gov (United States)

    Nan, Nan; Bu, Peng; Guo, Xin; Wang, Xiangzhao

    2012-03-01

    A three dimensional full-range complex Fourier domain optical coherence tomography (complex FDOCT) system based on sinusoidal phase-modulating method is proposed. With the system, the range of imaging depth is doubled and the sensitivity degradation with the lateral scan distance is avoided. Fourier analysis of B-scan data along lateral scan distance is used for reconstructing the complex spectral interferograms. The B-scan based Fourier method improves the system tolerance of sample movement and makes data processing less time consuming. In vivo volumetric imaging of human skin with the proposed full-range FDOCT system is demonstrated. The mirror image rejection ratio is about 30 dB. The stratum corneum, the epidermis and the upper dermis of skin can be clearly identified in the reconstructed three dimensional FDOCT images.

  20. MRS3D: 3D Spherical Wavelet Transform on the Sphere

    Science.gov (United States)

    Lanusse, F.; Rassat, A.; Starck, J.-L.

    2011-12-01

    Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D Spherical Fourier-Bessel (SFB) analysis is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. We present a new fast Discrete Spherical Fourier-Bessel Transform (DSFBT) based on both a discrete Bessel Transform and the HEALPIX angular pixelisation scheme. We tested the 3D wavelet transform and as a toy-application, applied a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and found we can successfully remove noise without much loss to the large scale structure. The new spherical 3D isotropic wavelet transform, called MRS3D, is ideally suited to analysing and denoising future 3D spherical cosmological surveys; it uses a novel discrete spherical Fourier-Bessel Transform. MRS3D is based on two packages, IDL and Healpix and can be used only if these two packages have been installed.

  1. Applications of visual evoked potentials and Fourier-domain optical coherence tomography in Parkinson's disease: a controlled study

    Directory of Open Access Journals (Sweden)

    Lucas Barasnevicius Quagliato

    2014-08-01

    Full Text Available Purpose: The goal of this cross-sectional observational study was to quantify the pattern-shift visual evoked potentials (VEP and the thickness as well as the volume of retinal layers using optical coherence tomography (OCT across a cohort of Parkinson's disease (PD patients and age-matched controls. Methods: Forty-three PD patients and 38 controls were enrolled. All participants underwent a detailed neurological and ophthalmologic evaluation. Idiopathic PD cases were included. Cases with glaucoma or increased intra-ocular pressure were excluded. Patients were assessed by VEP and high-resolution Fourier-domain OCT, which quantified the inner and outer thicknesses of the retinal layers. VEP latencies and the thicknesses of the retinal layers were the main outcome measures. Results: The mean age, with standard deviation (SD, of the PD patients and controls were 63.1 (7.5 and 62.4 (7.2 years, respectively. The patients were predominantly in the initial Hoehn-Yahr (HY disease stages (34.8% in stage 1 or 1.5, and 55.8 % in stage 2. The VEP latencies and the thicknesses as well as the volumes of the retinal inner and outer layers of the groups were similar. A negative correlation between the retinal thickness and the age was noted in both groups. The thickness of the retinal nerve fibre layer (RNFL was 102.7 μm in PD patients vs. 104.2 μm in controls. Conclusions: The thicknesses of retinal layers, VEP, and RNFL of PD patients were similar to those of the controls. Despite the use of a representative cohort of PD patients and high-resolution OCT in this study, further studies are required to establish the validity of using OCT and VEP measurements as the anatomic and functional biomarkers for the evaluation of retinal and visual pathways in PD patients.

  2. Analysis the macular ganglion cell complex thickness in monocular strabismic amblyopia patients by Fourier-domain OCT

    Directory of Open Access Journals (Sweden)

    Hong-Wei Deng

    2014-11-01

    Full Text Available AIM: To detect the macular ganglion cell complex thickness in monocular strabismus amblyopia patients, in order to explore the relationship between the degree of amblyopia and retinal ganglion cell complex thickness, and found out whether there is abnormal macular ganglion cell structure in strabismic amblyopia. METHODS: Using a fourier-domain optical coherence tomography(FD-OCTinstrument iVue®(Optovue Inc, Fremont, CA, Macular ganglion cell complex(mGCCthickness was measured and statistical the relation rate with the best vision acuity correction was compared Gman among 26 patients(52 eyesincluded in this study. RESULTS: The mean thickness of the mGCC in macular was investigated into three parts: centrial, inner circle(3mmand outer circle(6mm. The mean thicknesses of mGCC in central, inner and outer circle was 50.74±21.51μm, 101.4±8.51μm, 114.2±9.455μm in the strabismic amblyopia eyes(SAE, and 43.79±11.92μm,92.47±25.01μm, 113.3±12.88μm in the contralateral sound eyes(CSErespectively. There was no statistically significant difference among the eyes(P>0.05. But the best corrected vision acuity had a good correlation rate between mGcc thicknesses, which was better relative for the lower part than the upper part.CONCLUSION:There is a relationship between the amblyopia vision acuity and the mGCC thickness. Although there has not statistically significant difference of the mGCC thickness compared with the SAE and CSE. To measure the macular center mGCC thickness in clinic may understand the degree of amblyopia.

  3. Measurement of retinal blood flow in the rat by combining Doppler Fourier-domain optical coherence tomography with fundus imaging

    Science.gov (United States)

    Werkmeister, René M.; Vietauer, Martin; Knopf, Corinna; Fürnsinn, Clemens; Leitgeb, Rainer A.; Reitsamer, Herbert; Gröschl, Martin; Garhöfer, Gerhard; Vilser, Walthard; Schmetterer, Leopold

    2014-10-01

    A wide variety of ocular diseases are associated with abnormalities in ocular circulation. As such, there is considerable interest in techniques for quantifying retinal blood flow, among which Doppler optical coherence tomography (OCT) may be the most promising. We present an approach to measure retinal blood flow in the rat using a new optical system that combines the measurement of blood flow velocities via Doppler Fourier-domain optical coherence tomography and the measurement of vessel diameters using a fundus camera-based technique. Relying on fundus images for extraction of retinal vessel diameters instead of OCT images improves the reliability of the technique. The system was operated with an 841-nm superluminescent diode and a charge-coupled device camera that could be operated at a line rate of 20 kHz. We show that the system is capable of quantifying the response of 100% oxygen breathing on the retinal blood flow. In six rats, we observed a decrease in retinal vessel diameters of 13.2% and a decrease in retinal blood velocity of 42.6%, leading to a decrease in retinal blood flow of 56.7%. Furthermore, in four rats, the response of retinal blood flow during stimulation with diffuse flicker light was assessed. Retinal vessel diameter and blood velocity increased by 3.4% and 28.1%, respectively, leading to a relative increase in blood flow of 36.2%;. The presented technique shows much promise to quantify early changes in retinal blood flow during provocation with various stimuli in rodent models of ocular diseases in rats.

  4. Expansion of Schlemm's canal by travoprost in healthy subjects determined by Fourier-domain optical coherence tomography.

    Science.gov (United States)

    Chen, Junyi; Huang, Haili; Zhang, Shenghai; Chen, Xueli; Sun, Xinghuai

    2013-02-07

    To determine the effect of travoprost 0.004% on Schlemm's canal (SC) in healthy human eyes using Fourier-domain optical coherence tomography (FD-OCT). Twelve healthy volunteers were recruited for a double-blind, placebo-controlled, randomized, and paired comparison study. Right eyes of subjects were randomly assigned to receive either travoprost 0.004% or placebo; the contralateral eye received the other treatment. FD-OCT imaging of SC and measurements of IOP were carried out before and at 1, 2, 4, 6, 8, 12, 24, 36, 48, 60, 72, and 84 hours after eye drop instillation. After instillation of travoprost eye drops, IOP gradually reduced, and the SC lumens expanded, while those values remained unchanged in placebo treated eyes. At 8 hours after the travoprost administration, the mean SC area increased 90.30% and 90.20%, respectively, in the nasal and temporal quadrant of the treated eyes as compared with the placebo group. The SC area and IOP showed a similar pattern of changes at most time points examined. In travoprost-treated eyes, a statistically significant correlation between SC area and IOP is observed (r = -0.2817; P = 0.0004). Measurements of the SC area showed sufficient repeatability and reproducibility. SC can be noninvasively imaged and quantitatively assessed in the living healthy human eye by FD-OCT. Travoprost treatment leads to SC lumen expansion accompanied by a drop of IOP in the healthy eye, likely as a result of the enhancement of pressure sensitive trabecular meshwork outflow induced by travoprost.

  5. Fast Domain Partitioning Method for dynamic boundary integral equations applicable to non-planar faults dipping in 3-D elastic half-space

    Science.gov (United States)

    Ando, Ryosuke

    2016-11-01

    The elastodynamic boundary integral equation method (BIEM) in real space and in the temporal domain is an accurate semi-analytical tool to investigate the earthquake rupture dynamics on non-planar faults. However, its heavy computational demand for a historic integral generally increases with a time complexity of O(MN3)for the number of time steps N and elements M due to volume integration in the causality cone. In this study, we introduce an efficient BIEM, termed the `Fast Domain Partitioning Method' (FDPM), which enables us to reduce the computation time to the order of the surface integral, O(MN2), without degrading the accuracy. The memory requirement is also reduced to O(M2) from O(M2N). FDPM uses the physical nature of Green's function for stress to partition the causality cone into the domains of the P and S wave fronts, the domain in-between the P and S wave fronts, and the domain of the static equilibrium, where the latter two domains exhibit simpler dependences on time and/or space. The scalability of this method is demonstrated on the large-scale parallel computing environments of distributed memory systems. It is also shown that FDPM enables an efficient use of memory storage, which makes it possible to reduce computation times to a previously unprecedented level. We thus present FDPM as a powerful tool to break through the current fundamental difficulties in running dynamic simulations of coseismic ruptures and earthquake cycles under realistic conditions of fault geometries.

  6. Comment on '3-D frequency-domain seismic wave modelling in heterogeneous, anisotropic media using a Gaussian quadrature grid approach' by Bing Zhou and S. A. Greenhalgh

    Science.gov (United States)

    de Basabe, Jonás D.

    2011-08-01

    Zhou & Greenhalgh have recently presented an application of the Gaussian quadrature grid to seismic modelling in which the authors propose a meshing scheme that partitions the domain independently of the discontinuities in the media parameters. This comment aims to clarify the implications that this strategy has on the accuracy.

  7. 3D and Education

    Science.gov (United States)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  8. Real-time processing for full-range Fourier-domain optical-coherence tomography with zero-filling interpolation using multiple graphic processing units.

    Science.gov (United States)

    Watanabe, Yuuki; Maeno, Seiya; Aoshima, Kenji; Hasegawa, Haruyuki; Koseki, Hitoshi

    2010-09-01

    The real-time display of full-range, 2048?axial pixelx1024?lateral pixel, Fourier-domain optical-coherence tomography (FD-OCT) images is demonstrated. The required speed was achieved by using dual graphic processing units (GPUs) with many stream processors to realize highly parallel processing. We used a zero-filling technique, including a forward Fourier transform, a zero padding to increase the axial data-array size to 8192, an inverse-Fourier transform back to the spectral domain, a linear interpolation from wavelength to wavenumber, a lateral Hilbert transform to obtain the complex spectrum, a Fourier transform to obtain the axial profiles, and a log scaling. The data-transfer time of the frame grabber was 15.73?ms, and the processing time, which includes the data transfer between the GPU memory and the host computer, was 14.75?ms, for a total time shorter than the 36.70?ms frame-interval time using a line-scan CCD camera operated at 27.9?kHz. That is, our OCT system achieved a processed-image display rate of 27.23 frames/s.

  9. Molecular cloning and 3D structure prediction of the first raw-starch-degrading glucoamylase without a separate starch-binding domain.

    Science.gov (United States)

    Hostinová, Eva; Solovicová, Adriana; Dvorský, Radovan; Gasperík, Juraj

    2003-03-15

    Raw-starch-degrading glucoamylases have been known as multidomain enzymes consisting of a catalytic domain connected to a starch-binding domain (SBD) by an O-glycosylated linker region. A molecular genetics approach has been chosen to find structural differences between two related glucoamylases, raw-starch-degrading Glm and nondegrading Glu, from the yeasts Saccharomycopsis fibuligera IFO 0111 and HUT 7212, respectively. We have found that Glm and Glu show a high primary (77%) and tertiary structure similarity. Glm, although possessing a good ability for raw starch degradation, did not show consensus amino acid residues to any SBD found in glucoamylases or other amylolytic enzymes. Raw starch binding and digestion by Glm must thus depend on the existence of a site(s) lying within the intact protein which lacks a separate SBD. The enzyme represents a structurally new type of raw-starch-degrading glucoamylase.

  10. High throughput functional assays of the variant antigen PfEMP1 reveal a single domain in the 3D7 Plasmodium falciparum genome that binds ICAM1 with high affinity and is targeted by naturally acquired neutralizing antibodies.

    Directory of Open Access Journals (Sweden)

    Andrew V Oleinikov

    2009-04-01

    Full Text Available Plasmodium falciparum-infected erythrocytes bind endothelial receptors to sequester in vascular beds, and binding to ICAM1 has been implicated in cerebral malaria. Binding to ICAM1 may be mediated by the variant surface antigen family PfEMP1: for example, 6 of 21 DBLbetaC2 domains from the IT4 strain PfEMP1 repertoire were shown to bind ICAM1, and the PfEMP1 containing these 6 domains are all classified as Group B or C type. In this study, we surveyed binding of ICAM1 to 16 DBLbetaC2 domains of the 3D7 strain PfEMP1 repertoire, using a high throughput Bioplex assay format. Only one DBL2betaC2 domain from the Group A PfEMP1 PF11_0521 showed strong specific binding. Among these 16 domains, DBL2betaC2(PF11_0521 best preserved the residues previously identified as conserved in ICAM1-binding versus non-binding domains. Our analyses further highlighted the potential role of conserved residues within predominantly non-conserved flexible loops in adhesion, and, therefore, as targets for intervention. Our studies also suggest that the structural/functional DBLbetaC2 domain involved in ICAM1 binding includes about 80 amino acid residues upstream of the previously suggested DBLbetaC2 domain. DBL2betaC2(PF11_0521 binding to ICAM1 was inhibited by immune sera from east Africa but not by control US sera. Neutralizing antibodies were uncommon in children but common in immune adults from east Africa. Inhibition of binding was much more efficient than reversal of binding, indicating a strong interaction between DBL2betaC2(PF11_0521 and ICAM1. Our high throughput approach will significantly accelerate studies of PfEMP1 binding domains and protective antibody responses.

  11. TEHNOLOGIJE 3D TISKALNIKOV

    OpenAIRE

    Kolar, Nataša

    2016-01-01

    Diplomsko delo predstavi razvoj tiskanja skozi čas. Podrobneje so opisani 3D tiskalniki, ki uporabljajo različne tehnologije 3D tiskanja. Predstavljene so različne tehnologije 3D tiskanja, njihova uporaba in narejeni prototipi oz. končni izdelki. Diplomsko delo opiše celoten postopek, od zamisli, priprave podatkov in tiskalnika do izdelave prototipa oz. končnega izdelka.

  12. 3D virtuel udstilling

    DEFF Research Database (Denmark)

    Tournay, Bruno; Rüdiger, Bjarne

    2006-01-01

    3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s.......3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s....

  13. Resolving the 3D spatial orientation of helix I in the closed state of the colicin E1 channel domain by FRET. Insights into the integration mechanism.

    Science.gov (United States)

    Lugo, Miguel R; Ho, Derek; Merrill, A Rod

    2016-10-15

    Current evidence suggests that the closed-state membrane model for the channel-forming domain of colicin E1 involves eight amphipathic α-helices (helices I-VII and X) that adopt a two-dimensional arrangement on the membrane surface. Two central hydrophobic α-helices in colicin E1 (VIII and IX) adopt a transmembrane location-the umbrella model. Helices I and II have been shown to participate in the channel by forming a transmembrane segment (TM1) in the voltage-induced open channel state. Consequently, it is paramount to determine the relative location and orientation of helix I in the two-dimensional arrangement of the membrane. A new, low-resolution, three-dimensional model of the closed state of the colicin E1 channel was constructed based on FRET measurements between three naturally occurring Trp residues and three sites in helix I, in addition to previously reported FRET distances for the channel domain. Furthermore, a new mechanism for the channel integration process involving the transition of the soluble to membrane-bound form is presented based on a plethora of kinetic data for this process.

  14. Aspects of defects in 3d-3d correspondence

    Energy Technology Data Exchange (ETDEWEB)

    Gang, Dongmin [Kavli Institute for the Physics and Mathematics of the Universe (WPI), University of Tokyo,Chiba 277-8583 (Japan); Kim, Nakwoo [Department of Physics and Research Institute of Basic Science, Kyung Hee University,Seoul 02447 (Korea, Republic of); School of Physics, Korea Institute for Advanced Study,Seoul 02455 (Korea, Republic of); Romo, Mauricio; Yamazaki, Masahito [Kavli Institute for the Physics and Mathematics of the Universe (WPI), University of Tokyo,Chiba 277-8583 (Japan); School of Natural Sciences, Institute for Advanced Study,Princeton, NJ 08540 (United States)

    2016-10-12

    In this paper we study supersymmetric co-dimension 2 and 4 defects in the compactification of the 6d (2,0) theory of type A{sub N−1} on a 3-manifold M. The so-called 3d-3d correspondence is a relation between complexified Chern-Simons theory (with gauge group SL(N,ℂ)) on M and a 3d N=2 theory T{sub N}[M]. We study this correspondence in the presence of supersymmetric defects, which are knots/links inside the 3-manifold. Our study employs a number of different methods: state-integral models for complex Chern-Simons theory, cluster algebra techniques, domain wall theory T[SU(N)], 5d N=2 SYM, and also supergravity analysis through holography. These methods are complementary and we find agreement between them. In some cases the results lead to highly non-trivial predictions on the partition function. Our discussion includes a general expression for the cluster partition function, which can be used to compute in the presence of maximal and certain class of non-maximal punctures when N>2. We also highlight the non-Abelian description of the 3d N=2T{sub N}[M] theory with defect included, when such a description is available. This paper is a companion to our shorter paper http://dx.doi.org/10.1088/1751-8113/49/30/30LT02, which summarizes our main results.

  15. Aspects of defects in 3d-3d correspondence

    Science.gov (United States)

    Gang, Dongmin; Kim, Nakwoo; Romo, Mauricio; Yamazaki, Masahito

    2016-10-01

    In this paper we study supersymmetric co-dimension 2 and 4 defects in the compactification of the 6d (2, 0) theory of type A N -1 on a 3-manifold M . The so-called 3d-3d correspondence is a relation between complexified Chern-Simons theory (with gauge group SL(N,C) ) on M and a 3d N=2 theory T N [ M ]. We study this correspondence in the presence of supersymmetric defects, which are knots/links inside the 3-manifold. Our study employs a number of different methods: state-integral models for complex Chern-Simons theory, cluster algebra techniques, domain wall theory T [SU( N )], 5d N=2 SYM, and also supergravity analysis through holography. These methods are complementary and we find agreement between them. In some cases the results lead to highly non-trivial predictions on the partition function. Our discussion includes a general expression for the cluster partition function, which can be used to compute in the presence of maximal and certain class of non-maximal punctures when N > 2. We also highlight the non-Abelian description of the 3d N=2 T N [ M ] theory with defect included, when such a description is available. This paper is a companion to our shorter paper [1], which summarizes our main results.

  16. Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome.

    Science.gov (United States)

    Pontvianne, Frédéric; Carpentier, Marie-Christine; Durut, Nathalie; Pavlištová, Veronika; Jaške, Karin; Schořová, Šárka; Parrinello, Hugues; Rohmer, Marine; Pikaard, Craig S; Fojtová, Miloslava; Fajkus, Jiří; Sáez-Vásquez, Julio

    2016-08-01

    The nucleolus is the site of rRNA gene transcription, rRNA processing, and ribosome biogenesis. However, the nucleolus also plays additional roles in the cell. We isolated nucleoli using fluorescence-activated cell sorting (FACS) and identified nucleolus-associated chromatin domains (NADs) by deep sequencing, comparing wild-type plants and null mutants for the nucleolar protein NUCLEOLIN 1 (NUC1). NADs are primarily genomic regions with heterochromatic signatures and include transposable elements (TEs), sub-telomeric regions, and mostly inactive protein-coding genes. However, NADs also include active rRNA genes and the entire short arm of chromosome 4 adjacent to them. In nuc1 null mutants, which alter rRNA gene expression and overall nucleolar structure, NADs are altered, telomere association with the nucleolus is decreased, and telomeres become shorter. Collectively, our studies reveal roles for NUC1 and the nucleolus in the spatial organization of chromosomes as well as telomere maintenance.

  17. Blender 3D cookbook

    CERN Document Server

    Valenza, Enrico

    2015-01-01

    This book is aimed at the professionals that already have good 3D CGI experience with commercial packages and have now decided to try the open source Blender and want to experiment with something more complex than the average tutorials on the web. However, it's also aimed at the intermediate Blender users who simply want to go some steps further.It's taken for granted that you already know how to move inside the Blender interface, that you already have 3D modeling knowledge, and also that of basic 3D modeling and rendering concepts, for example, edge-loops, n-gons, or samples. In any case, it'

  18. A parallel domain decomposition-based implicit method for the Cahn-Hilliard-Cook phase-field equation in 3D

    KAUST Repository

    Zheng, Xiang

    2015-03-01

    We present a numerical algorithm for simulating the spinodal decomposition described by the three dimensional Cahn-Hilliard-Cook (CHC) equation, which is a fourth-order stochastic partial differential equation with a noise term. The equation is discretized in space and time based on a fully implicit, cell-centered finite difference scheme, with an adaptive time-stepping strategy designed to accelerate the progress to equilibrium. At each time step, a parallel Newton-Krylov-Schwarz algorithm is used to solve the nonlinear system. We discuss various numerical and computational challenges associated with the method. The numerical scheme is validated by a comparison with an explicit scheme of high accuracy (and unreasonably high cost). We present steady state solutions of the CHC equation in two and three dimensions. The effect of the thermal fluctuation on the spinodal decomposition process is studied. We show that the existence of the thermal fluctuation accelerates the spinodal decomposition process and that the final steady morphology is sensitive to the stochastic noise. We also show the evolution of the energies and statistical moments. In terms of the parallel performance, it is found that the implicit domain decomposition approach scales well on supercomputers with a large number of processors. © 2015 Elsevier Inc.

  19. Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome

    Directory of Open Access Journals (Sweden)

    Frédéric Pontvianne

    2016-08-01

    Full Text Available The nucleolus is the site of rRNA gene transcription, rRNA processing, and ribosome biogenesis. However, the nucleolus also plays additional roles in the cell. We isolated nucleoli using fluorescence-activated cell sorting (FACS and identified nucleolus-associated chromatin domains (NADs by deep sequencing, comparing wild-type plants and null mutants for the nucleolar protein NUCLEOLIN 1 (NUC1. NADs are primarily genomic regions with heterochromatic signatures and include transposable elements (TEs, sub-telomeric regions, and mostly inactive protein-coding genes. However, NADs also include active rRNA genes and the entire short arm of chromosome 4 adjacent to them. In nuc1 null mutants, which alter rRNA gene expression and overall nucleolar structure, NADs are altered, telomere association with the nucleolus is decreased, and telomeres become shorter. Collectively, our studies reveal roles for NUC1 and the nucleolus in the spatial organization of chromosomes as well as telomere maintenance.

  20. Higher-order in time "quasi-unconditionally stable" ADI solvers for the compressible Navier-Stokes equations in 2D and 3D curvilinear domains

    CERN Document Server

    Bruno, Oscar

    2015-01-01

    This paper introduces alternating-direction implicit (ADI) solvers of higher order of time-accuracy (orders two to six) for the compressible Navier-Stokes equations in two- and three-dimensional curvilinear domains. The higher-order accuracy in time results from 1) An application of the backward differentiation formulae time-stepping algorithm (BDF) in conjunction with 2) A BDF-like extrapolation technique for certain components of the nonlinear terms (which makes use of nonlinear solves unnecessary), as well as 3) A novel application of the Douglas-Gunn splitting (which greatly facilitates handling of boundary conditions while preserving higher-order accuracy in time). As suggested by our theoretical analysis of the algorithms for a variety of special cases, an extensive set of numerical experiments clearly indicate that all of the BDF-based ADI algorithms proposed in this paper are "quasi-unconditionally stable" in the following sense: each algorithm is stable for all couples $(h,\\Delta t)$ of spatial and t...

  1. A 3D Spectral Anelastic Hydrodynamic Code for Shearing, Stratified Flows

    CERN Document Server

    Barranco, J A; Barranco, Joseph A.; Marcus, Philip S.

    2005-01-01

    We have developed a three-dimensional (3D) spectral hydrodynamic code to study vortex dynamics in rotating, shearing, stratified systems (e.g. the atmosphere of gas giant planets, protoplanetary disks around newly forming protostars). The time-independent background state is stably stratified in the vertical direction and has a unidirectional linear shear flow aligned with one horizontal axis. Superposed on this background state is an unsteady, subsonic flow that is evolved with the Euler equations subject to the anelastic approximation to filter acoustic phenomena. A Fourier-Fourier basis in a set of quasi-Lagrangian coordinates that advect with the background shear is used for spectral expansions in the two horizontal directions. For the vertical direction, two different sets of basis functions have been implemented: (1) Chebyshev polynomials on a truncated, finite domain, and (2) rational Chebyshev functions on an infinite domain. Use of this latter set is equivalent to transforming the infinite domain to ...

  2. 3D Digital Modelling

    DEFF Research Database (Denmark)

    Hundebøl, Jesper

    wave of new building information modelling tools demands further investigation, not least because of industry representatives' somewhat coarse parlance: Now the word is spreading -3D digital modelling is nothing less than a revolution, a shift of paradigm, a new alphabet... Research qeustions. Based...... on empirical probes (interviews, observations, written inscriptions) within the Danish construction industry this paper explores the organizational and managerial dynamics of 3D Digital Modelling. The paper intends to - Illustrate how the network of (non-)human actors engaged in the promotion (and arrest) of 3......D Modelling (in Denmark) stabilizes - Examine how 3D Modelling manifests itself in the early design phases of a construction project with a view to discuss the effects hereof for i.a. the management of the building process. Structure. The paper introduces a few, basic methodological concepts...

  3. DELTA 3D PRINTER

    Directory of Open Access Journals (Sweden)

    ȘOVĂILĂ Florin

    2016-07-01

    Full Text Available 3D printing is a very used process in industry, the generic name being “rapid prototyping”. The essential advantage of a 3D printer is that it allows the designers to produce a prototype in a very short time, which is tested and quickly remodeled, considerably reducing the required time to get from the prototype phase to the final product. At the same time, through this technique we can achieve components with very precise forms, complex pieces that, through classical methods, could have been accomplished only in a large amount of time. In this paper, there are presented the stages of a 3D model execution, also the physical achievement after of a Delta 3D printer after the model.

  4. Professional Papervision3D

    CERN Document Server

    Lively, Michael

    2010-01-01

    Professional Papervision3D describes how Papervision3D works and how real world applications are built, with a clear look at essential topics such as building websites and games, creating virtual tours, and Adobe's Flash 10. Readers learn important techniques through hands-on applications, and build on those skills as the book progresses. The companion website contains all code examples, video step-by-step explanations, and a collada repository.

  5. AE3D

    Energy Technology Data Exchange (ETDEWEB)

    2016-06-20

    AE3D solves for the shear Alfven eigenmodes and eigenfrequencies in a torodal magnetic fusion confinement device. The configuration can be either 2D (e.g. tokamak, reversed field pinch) or 3D (e.g. stellarator, helical reversed field pinch, tokamak with ripple). The equations solved are based on a reduced MHD model and sound wave coupling effects are not currently included.

  6. Generalized fiber Fourier optics.

    Science.gov (United States)

    Cincotti, Gabriella

    2011-06-15

    A twofold generalization of the optical schemes that perform the discrete Fourier transform (DFT) is given: new passive planar architectures are presented where the 2 × 2 3 dB couplers are replaced by M × M hybrids, reducing the number of required connections and phase shifters. Furthermore, the planar implementation of the discrete fractional Fourier transform (DFrFT) is also described, with a waveguide grating router (WGR) configuration and a properly modified slab coupler.

  7. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    Energy Technology Data Exchange (ETDEWEB)

    Ramamoorthy, Sripriya [Oregon Hearing Research Center, Oregon Health & Science University, Portland, Oregon (United States); Zhang, Yuan; Jacques, Steven [Department of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon (United States); Petrie, Tracy; Wang, Ruikang [Department of Bioengineering, University of Washington, Seattle, Washington (United States); Nuttall, Alfred L. [Oregon Hearing Research Center, Oregon Health & Science University, Portland, Oregon (United States); Kresge Hearing Research Institute, The University of Michigan, Ann Arbor, Michigan (United States)

    2015-12-31

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  8. Transit Timing Observations from Kepler: III. Confirmation of 4 Multiple Planet Systems by a Fourier-Domain Study of Anti-correlated Transit Timing Variations

    Energy Technology Data Exchange (ETDEWEB)

    Steffen, Jason H.; /Fermilab; Fabrycky, Daniel C.; /Lick Observ.; Ford, Eric B.; /Florida U.; Carter, Joshua A.; /Harvard-Smithsonian Ctr. Astrophys.; Fressin, Francois; /Harvard-Smithsonian Ctr. Astrophys.; Holman, Matthew J.; /Harvard-Smithsonian Ctr. Astrophys.; Lissauer, Jack J.; /NASA, Ames; Rowe, Jason F.; /SETI Inst., Mtn. View /NASA, Ames; Ragozzine, Darin; /Harvard-Smithsonian Ctr. Astrophys.; Welsh, William F.; /Caltech; Borucki, William J.; /NASA, Ames /UC, Santa Barbara

    2012-01-01

    We present a method to confirm the planetary nature of objects in systems with multiple transiting exoplanet candidates. This method involves a Fourier-domain analysis of the deviations in the transit times from a constant period that result from dynamical interactions within the system. The combination of observed anticorrelations in the transit times and mass constraints from dynamical stability allow us to claim the discovery of four planetary systems, Kepler-25, Kepler-26, Kepler-27 and Kepler-28, containing eight planets and one additional planet candidate.

  9. Transit Timing Observations from Kepler: III. Confirmation of 4 Multiple Planet Systems by a Fourier-Domain Study of Anti-correlated Transit Timing Variations

    CERN Document Server

    Steffen, Jason H; Ford, Eric B; Carter, Joshua A; Desert, Jean-Michel; Fressin, Francois; Holman, Matthew J; Lissauer, Jack J; Moorhead, Althea V; Rowe, Jason F; Ragozzine, Darin; Welsh, William F; Batalha, Natalie M; Borucki, William J; Buchhave, Lars A; Bryson, Steve; Caldwell, Douglas A; Charbonneau, David; Ciardi, David R; Cochran, William D; Endl, Michael; Everett, Mark E; Gautier, Thomas N; Gilliland, Ron L; Girouard, Forrest R; Jenkins, Jon M; Horch, Elliott; Howell, Steve B; Isaacson, Howard; Klaus, Todd C; Koch, David G; Latham, David W; Li, Jie; Lucas, Philip; MacQueen, Phillip J; Marcy, Geoffrey W; McCauliff, Sean; Middour, Christopher K; Morris, Robert L; Mullally, Fergal R; Quinn, Samuel N; Quintana, Elisa V; Shporer, Avi; Still, Martin; Tenenbaum, Peter; Thompson, Susan E; Twicken, Joseph D; Van Cleve, Jeffery

    2012-01-01

    We present a method to confirm the planetary nature of objects in systems with multiple transiting exoplanet candidates. This method involves a Fourier-Domain analysis of the deviations in the transit times from a constant period that result from dynamical interactions within the system. The combination of observed anti-correlations in the transit times and mass constraints from dynamical stability allow us to claim the discovery of four planetary systems Kepler-25, Kepler-26, Kepler-27, and Kepler-28, containing eight planets and one additional planet candidate.

  10. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    Science.gov (United States)

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Jacques, Steven; Wang, Ruikang; Nuttall, Alfred L.

    2015-12-01

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  11. 3D Projection Installations

    DEFF Research Database (Denmark)

    Halskov, Kim; Johansen, Stine Liv; Bach Mikkelsen, Michelle

    2014-01-01

    Three-dimensional projection installations are particular kinds of augmented spaces in which a digital 3-D model is projected onto a physical three-dimensional object, thereby fusing the digital content and the physical object. Based on interaction design research and media studies, this article...... contributes to the understanding of the distinctive characteristics of such a new medium, and identifies three strategies for designing 3-D projection installations: establishing space; interplay between the digital and the physical; and transformation of materiality. The principal empirical case, From...... Fingerplan to Loop City, is a 3-D projection installation presenting the history and future of city planning for the Copenhagen area in Denmark. The installation was presented as part of the 12th Architecture Biennale in Venice in 2010....

  12. 3D Spectroscopic Instrumentation

    CERN Document Server

    Bershady, Matthew A

    2009-01-01

    In this Chapter we review the challenges of, and opportunities for, 3D spectroscopy, and how these have lead to new and different approaches to sampling astronomical information. We describe and categorize existing instruments on 4m and 10m telescopes. Our primary focus is on grating-dispersed spectrographs. We discuss how to optimize dispersive elements, such as VPH gratings, to achieve adequate spectral resolution, high throughput, and efficient data packing to maximize spatial sampling for 3D spectroscopy. We review and compare the various coupling methods that make these spectrographs ``3D,'' including fibers, lenslets, slicers, and filtered multi-slits. We also describe Fabry-Perot and spatial-heterodyne interferometers, pointing out their advantages as field-widened systems relative to conventional, grating-dispersed spectrographs. We explore the parameter space all these instruments sample, highlighting regimes open for exploitation. Present instruments provide a foil for future development. We give an...

  13. Radiochromic 3D Detectors

    Science.gov (United States)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  14. FGG-NUFFT-Based Method for Near-Field 3-D Imaging Using Millimeter Waves.

    Science.gov (United States)

    Kan, Yingzhi; Zhu, Yongfeng; Tang, Liang; Fu, Qiang; Pei, Hucheng

    2016-09-19

    In this paper, to deal with the concealed target detection problem, an accurate and efficient algorithm for near-field millimeter wave three-dimensional (3-D) imaging is proposed that uses a two-dimensional (2-D) plane antenna array. First, a two-dimensional fast Fourier transform (FFT) is performed on the scattered data along the antenna array plane. Then, a phase shift is performed to compensate for the spherical wave effect. Finally, fast Gaussian gridding based nonuniform FFT (FGG-NUFFT) combined with 2-D inverse FFT (IFFT) is performed on the nonuniform 3-D spatial spectrum in the frequency wavenumber domain to achieve 3-D imaging. The conventional method for near-field 3-D imaging uses Stolt interpolation to obtain uniform spatial spectrum samples and performs 3-D IFFT to reconstruct a 3-D image. Compared with the conventional method, our FGG-NUFFT based method is comparable in both efficiency and accuracy in the full sampled case and can obtain more accurate images with less clutter and fewer noisy artifacts in the down-sampled case, which are good properties for practical applications. Both simulation and experimental results demonstrate that the FGG-NUFFT-based near-field 3-D imaging algorithm can have better imaging performance than the conventional method for down-sampled measurements.

  15. FGG-NUFFT-Based Method for Near-Field 3-D Imaging Using Millimeter Waves

    Directory of Open Access Journals (Sweden)

    Yingzhi Kan

    2016-09-01

    Full Text Available In this paper, to deal with the concealed target detection problem, an accurate and efficient algorithm for near-field millimeter wave three-dimensional (3-D imaging is proposed that uses a two-dimensional (2-D plane antenna array. First, a two-dimensional fast Fourier transform (FFT is performed on the scattered data along the antenna array plane. Then, a phase shift is performed to compensate for the spherical wave effect. Finally, fast Gaussian gridding based nonuniform FFT (FGG-NUFFT combined with 2-D inverse FFT (IFFT is performed on the nonuniform 3-D spatial spectrum in the frequency wavenumber domain to achieve 3-D imaging. The conventional method for near-field 3-D imaging uses Stolt interpolation to obtain uniform spatial spectrum samples and performs 3-D IFFT to reconstruct a 3-D image. Compared with the conventional method, our FGG-NUFFT based method is comparable in both efficiency and accuracy in the full sampled case and can obtain more accurate images with less clutter and fewer noisy artifacts in the down-sampled case, which are good properties for practical applications. Both simulation and experimental results demonstrate that the FGG-NUFFT-based near-field 3-D imaging algorithm can have better imaging performance than the conventional method for down-sampled measurements.

  16. Interaktiv 3D design

    DEFF Research Database (Denmark)

    Villaume, René Domine; Ørstrup, Finn Rude

    2002-01-01

    Projektet undersøger potentialet for interaktiv 3D design via Internettet. Arkitekt Jørn Utzons projekt til Espansiva blev udviklet som et byggesystem med det mål, at kunne skabe mangfoldige planmuligheder og mangfoldige facade- og rumudformninger. Systemets bygningskomponenter er digitaliseret som...... 3D elementer og gjort tilgængelige. Via Internettet er det nu muligt at sammenstille og afprøve en uendelig  række bygningstyper som  systemet blev tænkt og udviklet til....

  17. 3-D surface profilometry based on modulation measurement by applying wavelet transform method

    Science.gov (United States)

    Zhong, Min; Chen, Feng; Xiao, Chao; Wei, Yongchao

    2017-01-01

    A new analysis of 3-D surface profilometry based on modulation measurement technique by the application of Wavelet Transform method is proposed. As a tool excelling for its multi-resolution and localization in the time and frequency domains, Wavelet Transform method with good localized time-frequency analysis ability and effective de-noizing capacity can extract the modulation distribution more accurately than Fourier Transform method. Especially for the analysis of complex object, more details of the measured object can be well remained. In this paper, the theoretical derivation of Wavelet Transform method that obtains the modulation values from a captured fringe pattern is given. Both computer simulation and elementary experiment are used to show the validity of the proposed method by making a comparison with the results of Fourier Transform method. The results show that the Wavelet Transform method has a better performance than the Fourier Transform method in modulation values retrieval.

  18. 3D Wire 2015

    DEFF Research Database (Denmark)

    Jordi, Moréton; F, Escribano; J. L., Farias

    This document is a general report on the implementation of gamification in 3D Wire 2015 event. As the second gamification experience in this event, we have delved deeply in the previous objectives (attracting public areas less frequented exhibition in previous years and enhance networking) and ha......, improves socialization and networking, improves media impact, improves fun factor and improves encouragement of the production team....

  19. Shaping 3-D boxes

    DEFF Research Database (Denmark)

    Stenholt, Rasmus; Madsen, Claus B.

    2011-01-01

    Enabling users to shape 3-D boxes in immersive virtual environments is a non-trivial problem. In this paper, a new family of techniques for creating rectangular boxes of arbitrary position, orientation, and size is presented and evaluated. These new techniques are based solely on position data...

  20. Tangible 3D Modelling

    DEFF Research Database (Denmark)

    Hejlesen, Aske K.; Ovesen, Nis

    2012-01-01

    This paper presents an experimental approach to teaching 3D modelling techniques in an Industrial Design programme. The approach includes the use of tangible free form models as tools for improving the overall learning. The paper is based on lecturer and student experiences obtained through facil...

  1. 3D photoacoustic imaging

    Science.gov (United States)

    Carson, Jeffrey J. L.; Roumeliotis, Michael; Chaudhary, Govind; Stodilka, Robert Z.; Anastasio, Mark A.

    2010-06-01

    Our group has concentrated on development of a 3D photoacoustic imaging system for biomedical imaging research. The technology employs a sparse parallel detection scheme and specialized reconstruction software to obtain 3D optical images using a single laser pulse. With the technology we have been able to capture 3D movies of translating point targets and rotating line targets. The current limitation of our 3D photoacoustic imaging approach is its inability ability to reconstruct complex objects in the field of view. This is primarily due to the relatively small number of projections used to reconstruct objects. However, in many photoacoustic imaging situations, only a few objects may be present in the field of view and these objects may have very high contrast compared to background. That is, the objects have sparse properties. Therefore, our work had two objectives: (i) to utilize mathematical tools to evaluate 3D photoacoustic imaging performance, and (ii) to test image reconstruction algorithms that prefer sparseness in the reconstructed images. Our approach was to utilize singular value decomposition techniques to study the imaging operator of the system and evaluate the complexity of objects that could potentially be reconstructed. We also compared the performance of two image reconstruction algorithms (algebraic reconstruction and l1-norm techniques) at reconstructing objects of increasing sparseness. We observed that for a 15-element detection scheme, the number of measureable singular vectors representative of the imaging operator was consistent with the demonstrated ability to reconstruct point and line targets in the field of view. We also observed that the l1-norm reconstruction technique, which is known to prefer sparseness in reconstructed images, was superior to the algebraic reconstruction technique. Based on these findings, we concluded (i) that singular value decomposition of the imaging operator provides valuable insight into the capabilities of

  2. 基于图像频谱分析三维网格模型数字浮雕生成算法%Frequency Domain Approach to Generating Bas-relief from 3D Mesh

    Institute of Scientific and Technical Information of China (English)

    江嘉晋; 刘胜兰; 李博

    2011-01-01

    由3维模型生成2.5维数字浮雕曲面是最近国内外数字浮雕研究的热点,通过对三维网格模型频率域的能量进行压缩来得到几何高度被压缩的浮雕模型.算法通过对三维模型进行重新采样,获得视线方向上的规则化深度图,然后利用图像傅里叶变换对深度图进行频谱分析,最后将模型高度的压缩转换为频谱域能量系数的压缩来得到浮雕曲面模型.在压缩过程中,应用高通滤波器工具对低频能量进行压缩、应用对数压缩函数对高频边缘压缩,从而使得生成的浮雕达到较好的效果.实例表明在频率域对三维模型的能量进行压缩来生成浮雕是可行的,算法对细节不太丰富的模型同样具有较好的效果.%Automatic generation of 2.5D digital bas-relief from 3D model recently becomes a hot spot in relief design. This paper proposes the algorithm for semi-automatic generation of bas-relief from 3D triangle mesh,and compresses the 3D model through non-linear decreasing geometric energy in the frequency domain. In order to meet the image spectral analysis,the triangle mesh of original models is changed into range image by resampling. In the compression process, the low frequency energy is compressed through high pass filter tools and application of methods such as logarithmic compression function on edge of mesh models to achieve better results. Examples show that generating the bas-relief in frequency domain is feasible,and the model without rich details is used to produce the same better digital bas-relief.

  3. Color image encryption based on color blend and chaos permutation in the reality-preserving multiple-parameter fractional Fourier transform domain

    Science.gov (United States)

    Lang, Jun

    2015-03-01

    In this paper, we propose a novel color image encryption method by using Color Blend (CB) and Chaos Permutation (CP) operations in the reality-preserving multiple-parameter fractional Fourier transform (RPMPFRFT) domain. The original color image is first exchanged and mixed randomly from the standard red-green-blue (RGB) color space to R‧G‧B‧ color space by rotating the color cube with a random angle matrix. Then RPMPFRFT is employed for changing the pixel values of color image, three components of the scrambled RGB color space are converted by RPMPFRFT with three different transform pairs, respectively. Comparing to the complex output transform, the RPMPFRFT transform ensures that the output is real which can save storage space of image and convenient for transmission in practical applications. To further enhance the security of the encryption system, the output of the former steps is scrambled by juxtaposition of sections of the image in the reality-preserving multiple-parameter fractional Fourier domains and the alignment of sections is determined by two coupled chaotic logistic maps. The parameters in the Color Blend, Chaos Permutation and the RPMPFRFT transform are regarded as the key in the encryption algorithm. The proposed color image encryption can also be applied to encrypt three gray images by transforming the gray images into three RGB color components of a specially constructed color image. Numerical simulations are performed to demonstrate that the proposed algorithm is feasible, secure, sensitive to keys and robust to noise attack and data loss.

  4. OTDM-to-WDM Conversion Based on Time-to-Frequency Mapping by Time-Domain Optical Fourier Transformation

    DEFF Research Database (Denmark)

    Palushani, Evarist; Mulvad, Hans Christian Hansen; Galili, Michael

    2012-01-01

    a dispersive medium followed by phase modulation; the latter being achieved by a four-wave mixing process with linearly chirped pump pulses. Both numerical and experimental investigations of the OTDM-to-WDM conversion technique are carried out. Experimental validations are performed on......This paper reports on the utilization of the timedomain optical Fourier transformation (OFT) technique for serial-to-parallel conversion of optical time division multiplexed (OTDM) data tributaries into dense wavelength division multiplexed (DWDM) channels. The OFT is implemented by using...

  5. FI3D : Direct-Touch Interaction for the Exploration of 3D Scientific Visualization Spaces

    NARCIS (Netherlands)

    Yu, Lingyun; Svetachov, Pjotr; Isenberg, Petra; Everts, Maarten H.; Isenberg, Tobias

    2010-01-01

    We present the design and evaluation of FI3D, a direct-touch data exploration technique for 3D visualization spaces. The exploration of three-dimensional data is core to many tasks and domains involving scientific visualizations. Thus, effective data navigation techniques are essential to enable com

  6. Unoriented 3d TFTs

    CERN Document Server

    Bhardwaj, Lakshya

    2016-01-01

    This paper generalizes two facts about oriented 3d TFTs to the unoriented case. On one hand, it is known that oriented 3d TFTs having a topological boundary condition admit a state-sum construction known as the Turaev-Viro construction. This is related to the string-net construction of fermionic phases of matter. We show how Turaev-Viro construction can be generalized to unoriented 3d TFTs. On the other hand, it is known that the "fermionic" versions of oriented TFTs, known as Spin-TFTs, can be constructed in terms of "shadow" TFTs which are ordinary oriented TFTs with an anomalous Z_2 1-form symmetry. We generalize this correspondence to Pin+ TFTs by showing that they can be constructed in terms of ordinary unoriented TFTs with anomalous Z_2 1-form symmetry having a mixed anomaly with time-reversal symmetry. The corresponding Pin+ TFT does not have any anomaly for time-reversal symmetry however and hence it can be unambiguously defined on a non-orientable manifold. In case a Pin+ TFT admits a topological bou...

  7. Real-time all-optical OFDM transmission system based on time-domain optical fourier transformation

    DEFF Research Database (Denmark)

    Guan, Pengyu; Kong, Deming; Røge, Kasper Meldgaard

    2014-01-01

    We propose a novel simple all-optical OFDM transmission system based on time-domain OFT using time-lenses. A real-time 160 Gbit/s DPSK OFDM transmission with 16 decorrelated data subcarriers is successfully demonstrated over 100 km.......We propose a novel simple all-optical OFDM transmission system based on time-domain OFT using time-lenses. A real-time 160 Gbit/s DPSK OFDM transmission with 16 decorrelated data subcarriers is successfully demonstrated over 100 km....

  8. 3D and beyond

    Science.gov (United States)

    Fung, Y. C.

    1995-05-01

    This conference on physiology and function covers a wide range of subjects, including the vasculature and blood flow, the flow of gas, water, and blood in the lung, the neurological structure and function, the modeling, and the motion and mechanics of organs. Many technologies are discussed. I believe that the list would include a robotic photographer, to hold the optical equipment in a precisely controlled way to obtain the images for the user. Why are 3D images needed? They are to achieve certain objectives through measurements of some objects. For example, in order to improve performance in sports or beauty of a person, we measure the form, dimensions, appearance, and movements.

  9. Real time processing of Fourier domain optical coherence tomography with fixed-pattern noise removal by partial median subtraction using a graphics processing unit.

    Science.gov (United States)

    Watanabe, Yuuki

    2012-05-01

    The author presents a graphics processing unit (GPU) programming for real-time Fourier domain optical coherence tomography (FD-OCT) with fixed-pattern noise removal by subtracting mean and median. In general, the fixed-pattern noise can be removed by the averaged spectrum from the many spectra of an actual measurement. However, a mean-spectrum results in artifacts as residual lateral lines caused by a small number of high-reflective points on a sample surface. These artifacts can be eliminated from OCT images by using medians instead of means. However, median calculations that are based on a sorting algorithm can generate a large amount of computation time. With the developed GPU programming, highly reflective surface regions were obtained by calculating the standard deviation of the Fourier transformed data in the lateral direction. The medians and means were then subtracted at the observed regions and other regions, such as backgrounds. When the median calculation was less than 256 positions out of a total 512 depths in an OCT image with 1024 A-lines, the GPU processing rate was faster than that of the line scan camera (46.9 kHz). Therefore, processed OCT images can be displayed in real-time using partial medians.

  10. 3D Surgical Simulation

    Science.gov (United States)

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  11. TOWARDS: 3D INTERNET

    Directory of Open Access Journals (Sweden)

    Ms. Swapnali R. Ghadge

    2013-08-01

    Full Text Available In today’s ever-shifting media landscape, it can be a complex task to find effective ways to reach your desired audience. As traditional media such as television continue to lose audience share, one venue in particular stands out for its ability to attract highly motivated audiences and for its tremendous growth potential the 3D Internet. The concept of '3D Internet' has recently come into the spotlight in the R&D arena, catching the attention of many people, and leading to a lot of discussions. Basically, one can look into this matter from a few different perspectives: visualization and representation of information, and creation and transportation of information, among others. All of them still constitute research challenges, as no products or services are yet available or foreseen for the near future. Nevertheless, one can try to envisage the directions that can be taken towards achieving this goal. People who take part in virtual worlds stay online longer with a heightened level of interest. To take advantage of that interest, diverse businesses and organizations have claimed an early stake in this fast-growing market. They include technology leaders such as IBM, Microsoft, and Cisco, companies such as BMW, Toyota, Circuit City, Coca Cola, and Calvin Klein, and scores of universities, including Harvard, Stanford and Penn State.

  12. High-speed, high-resolution Fourier-domain optical coherence tomography system for retinal imaging in the 1060 nm wavelength region.

    Science.gov (United States)

    Puvanathasan, Prabakar; Forbes, Peter; Ren, Zhao; Malchow, Doug; Boyd, Shelley; Bizheva, Kostadinka

    2008-11-01

    A high-speed (47,000 A-scans/s), ultrahigh axial resolution Fourier domain optical coherence tomography (OCT) system for retinal imaging at approximately 1060 nm, based on a 1024 pixel linear array, 47 kHz readout rate InGaAs camera is presented. When interfaced with a custom superluminescent diode (lambda(c) = 1020 nm, Deltalambda = 108 nm, Pout = 9 mW), the system provides 3.3 microm axial OCT resolution at the surface of biological tissue, approximately 4.5 microm in vivo in rat retina, approximately 5.7 microm in vivo in human retina, and 110 dB sensitivity for 870 microW incident power and 21 mus integration time. Retinal tomograms acquired in vivo from a human volunteer and a rat animal model show clear visualization of all intraretinal layer and increased penetration into the choroid.

  13. Wavelength-swept spectral and pulse shaping utilizing hybrid Fourier domain modelocking by fiber optical parametric and erbium-doped fiber amplifiers.

    Science.gov (United States)

    Cheng, Kyle H Y; Standish, Beau A; Yang, Victor X D; Cheung, K K Y; Gu, Xijia; Lam, Edmund Y; Wong, K K Y

    2010-02-01

    We report the first Fourier domain modelocked (FDML) laser constructed using optical parametric amplifier (OPA) in conjunction with an erbium-doped fiber amplifier (EDFA), centered at approximately 1555 nm, to the best of our knowledge. We utilize a one-pump OPA and a C-band EDFA in serial configuration with a tunable Fabry-Perot interferometer to generate a hybrid FDML spectrum. Results demonstrate a substantially better spectral shape, output power and stability than individual configurations, with decreased sensitivity to polarization changes. We believe this technique has the potential to enable several amplifiers to complement individual deficiencies resulting in improved spectral shapes and power generation for imaging applications such as optical coherence tomography (OCT).

  14. Two dimensional vibrations of the guinea pig apex organ of Corti measured in vivo using phase sensitive Fourier domain optical coherence tomography

    Science.gov (United States)

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Fridberger, Anders; Ren, Tianying; Wang, Ruikang; Jacques, Steven L.; Nuttall, Alfred L.

    2015-02-01

    In this study, we measure the in vivo apical-turn vibrations of the guinea pig organ of Corti in both axial and radial directions using phase-sensitive Fourier domain optical coherence tomography. The apical turn in guinea pig cochlea has best frequencies around 100 - 500 Hz which are relevant for human speech. Prior measurements of vibrations in the guinea pig apex involved opening the otic capsule, which has been questioned on the basis of the resulting changes to cochlear hydrodynamics. Here this limitation is overcome by measuring the vibrations through bone without opening the otic capsule. Furthermore, we have significantly reduced the surgery needed to access the guinea pig apex in the axial direction by introducing a miniature mirror inside the bulla. The method and preliminary data are discussed in this article.

  15. Imaging vibration of the cochlear partition of an excised guinea pig cochlea using phase-sensitive Fourier domain optical coherence tomography

    Science.gov (United States)

    Choudhury, Niloy; Zeng, Yaguang; Fridberger, Anders; Chen, Fangyi; Zha, Dingjun; Nuttall, Alfred L.; Wang, Ruikang K.

    2011-03-01

    Studying the sound stimulated vibrations of various membranes that form the complex structure of the organ of Corti in the cochlea of the inner ear is essential for understanding how the travelling sound wave of the basilar membrane couples its energy to the organ structures. In this paper we report the feasibility of using phase-sensitive Fourier domain optical coherence tomography (FD-OCT) to image the vibration of various micro-structures of the cochlea at the same time. An excised cochlea of a guinea pig was stimulated using sounds at various frequencies and vibration image was obtained. When measuring the apex area, vibration signal from different turns, which have different best response frequencies are obtained in the same image. The method has the potential to measure the response from a much wider region of the cochlea than any other currently used method. The noise floor for vibration image for the system at 200 Hz was ~0.3nm.

  16. Monitoring of the degradation in the rat's articular cartilage inducing osteoarthritis using common-path Fourier-domain optical coherence tomography

    Science.gov (United States)

    Shin, D. H.; Park, S. H.; Kim, B. Y.; Lee, M. Y.; Baik, H. K.; Seo, J. H.; Kang, J. U.; Song, C. G.

    2013-03-01

    The objective of this experiment is to evaluate the utility and limitations of optical coherence tomography (OCT) for real-time, high-resolution structural analysis. We monitored the degradation of the rat's articular cartilage inducing osteoarthritis (OA) and the change of the rat's articular cartilage recovery by treatment medication, using our developed common-path Fourier-domain (CP-FD) OCT. Also, we have done a comparative analysis the rat's articular cartilage and OA grade. To observe the progression of OA, we induced OA by injecting the monosodium iodoacetate (MIA) into the right knee joint. After the injection of MIA, we sacrificed the rats at intervals of 3 days and obtained OCT and histological images. OCT and histological images showed the OA progress of similar pattern. These results illustrated the potential for non-invasive diagnosis about the grade of OA using CP-FD OCT.

  17. Trabecular-Iris Circumference Volume in Open Angle Eyes Using Swept-Source Fourier Domain Anterior Segment Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Mohammed Rigi

    2014-01-01

    Full Text Available Purpose. To introduce a new anterior segment optical coherence tomography parameter, trabecular-iris circumference volume (TICV, which measures the integrated volume of the peripheral angle, and establish a reference range in normal, open angle eyes. Methods. One eye of each participant with open angles and a normal anterior segment was imaged using 3D mode by the CASIA SS-1000 (Tomey, Nagoya, Japan. Trabecular-iris space area (TISA and TICV at 500 and 750 µm were calculated. Analysis of covariance was performed to examine the effect of age and its interaction with spherical equivalent. Results. The study included 100 participants with a mean age of 50 (±15 years (range 20–79. TICV showed a normal distribution with a mean (±SD value of 4.75 µL (±2.30 for TICV500 and a mean (±SD value of 8.90 µL (±3.88 for TICV750. Overall, TICV showed an age-related reduction (P=0.035. In addition, angle volume increased with increased myopia for all age groups, except for those older than 65 years. Conclusions. This study introduces a new parameter to measure peripheral angle volume, TICV, with age-adjusted normal ranges for open angle eyes. Further investigation is warranted to determine the clinical utility of this new parameter.

  18. Coseismic slip distribution of the 2015 Mw7.8 Gorkha, Nepal, earthquake from joint inversion of GPS and InSAR data for slip within a 3-D heterogeneous Domain

    Science.gov (United States)

    Tung, Sui; Masterlark, Timothy

    2016-05-01

    We derive a coseismic slip model of the 2015 Mw7.8 Gorkha earthquake on the basis of GPS and line-of-sight displacements from ALOS-2 descending interferograms, using Green's functions calculated with a 3-D finite element model (FEM). The FEM simulates a nonuniform distribution of elastic material properties and a precise geometric configuration of the irregular topographical surface. The rupturing fault is modeled as a low-angle and north dipping surface within the Main Frontal Thrust along the convergent margin of the Himalayas. The optimal model that inherits heterogeneous material properties provides a significantly better solution than that in a homogenous domain at the 95% confidence interval. The best fit solution for the domain having a nonuniform distribution of material properties reveals a rhombus-shaped slip zone of three composite asperities. Slip is primarily concentrated at a depth of 15 km with both dip-slip (maximum 6.54 m) and strike-slip (maximum 2.0 m) components, giving rise to a geodetic-based moment of 1.09 × 1021 Nm in general agreement with the seismological estimate. The optimal relative weights among GPS and interferometric synthetic aperture radar (InSAR) are deduced from a new method, MC-HVCE which combines a Monte Carlo search and a Helmert Method of Variance Components Estimation. This method determines the relative weights in a systemic approach which preserves the intrinsic solution smoothness. The joint solution is significantly better than those inverted from each individual data set. This methodology allows us to integrate multiple data sets of geodetic observations with seismic tomography, in an effort to achieve a better understanding of seismic ruptures within crustal heterogeneity.

  19. Terahertz Time Domain, Raman and Fourier Transform Infrared Spectroscopy of Acrylamide, and the Application of Density Functional Theory

    Directory of Open Access Journals (Sweden)

    Ramzan Ullah

    2013-01-01

    Full Text Available We present terahertz time domain spectra of acrylamide in the frequency range from 0.2 to 2 THz with nearly constant refractive index having an average value of 1.33 and an absorption coefficient. Raman (95–3000 cm−1 and FTIR (450–4000 cm−1 spectra also show good agreement with density functional theory (DFT B3LYP 6-311G++ (3df 3pd calculations except C-H and N-H stretching frequencies even after scaling with scale factor of 0.9679. We use MOLVIB to rescale such frequencies to match experimental values.

  20. 3D-kompositointi

    OpenAIRE

    Piirainen, Jere

    2015-01-01

    Opinnäytetyössä käydään läpi yleisimpiä 3D-kompositointiin liittyviä tekniikoita sekä kompositointiin käytettyjä ohjelmia ja liitännäisiä. Työssä esitellään myös kompositoinnin juuret 1800-luvun lopulta aina nykyaikaiseen digitaaliseen kompositointiin asti. Kompositointi on yksinkertaisimmillaan usean kuvan liittämistä saumattomasti yhdeksi uskottavaksi kokonaisuudeksi. Vaikka prosessi vaatii visuaalista silmää, vaatii se myös paljon teknistä osaamista. Tämän lisäksi perusymmärrys kamera...

  1. Shaping 3-D boxes

    DEFF Research Database (Denmark)

    Stenholt, Rasmus; Madsen, Claus B.

    2011-01-01

    Enabling users to shape 3-D boxes in immersive virtual environments is a non-trivial problem. In this paper, a new family of techniques for creating rectangular boxes of arbitrary position, orientation, and size is presented and evaluated. These new techniques are based solely on position data......, making them different from typical, existing box shaping techniques. The basis of the proposed techniques is a new algorithm for constructing a full box from just three of its corners. The evaluation of the new techniques compares their precision and completion times in a 9 degree-of-freedom (Do......F) docking experiment against an existing technique, which requires the user to perform the rotation and scaling of the box explicitly. The precision of the users' box construction is evaluated by a novel error metric measuring the difference between two boxes. The results of the experiment strongly indicate...

  2. Investigation of pharmaceutical drugs and caffeine-containing foods using Fourier and terahertz time-domain spectroscopy

    Science.gov (United States)

    KaraliÅ«nas, Mindaugas; Venckevičius, Rimvydas; Kašalynas, Irmantas; Puc, Uroš; Abina, Andreja; Jeglič, Anton; Zidanšek, Aleksander; Valušis, Gintaras

    2015-08-01

    Several pharmaceutical drugs, such as alprazolam, ibuprofen, acetaminophen, activated carbon and others, and caffeine-containing foods were tested using terahertz (THz) time domain spectroscopy in the range from 0.3 to 2 THz. The dry powder of pharmaceutical drugs was mixed with HDPE and pressed into the pellets using hydraulic press. The coffee grounds were also pressed into the pellets after ball-milling and mixing with HDPE. The caffeine containing liquid foods were dried out on the paper strips of various stacking. Experiments allow one to determine characteristic spectral signatures of the investigated substances within THz range caused by active pharmaceutical ingredients, like in the case of caffeine, as well as supporting pharmaceutical ingredients. Spectroscopic THz imaging approach is considered as a possible option to identify packaged pharmaceutical drugs. The caffeine spectral features in the tested caffeine containing foods are difficult to observed due to the low caffeine concentration and complex caffeine chemical surrounding.

  3. Fourier series

    CERN Document Server

    Tolstov, Georgi P

    1962-01-01

    Richard A. Silverman's series of translations of outstanding Russian textbooks and monographs is well-known to people in the fields of mathematics, physics, and engineering. The present book is another excellent text from this series, a valuable addition to the English-language literature on Fourier series.This edition is organized into nine well-defined chapters: Trigonometric Fourier Series, Orthogonal Systems, Convergence of Trigonometric Fourier Series, Trigonometric Series with Decreasing Coefficients, Operations on Fourier Series, Summation of Trigonometric Fourier Series, Double Fourie

  4. Intraoral 3D scanner

    Science.gov (United States)

    Kühmstedt, Peter; Bräuer-Burchardt, Christian; Munkelt, Christoph; Heinze, Matthias; Palme, Martin; Schmidt, Ingo; Hintersehr, Josef; Notni, Gunther

    2007-09-01

    Here a new set-up of a 3D-scanning system for CAD/CAM in dental industry is proposed. The system is designed for direct scanning of the dental preparations within the mouth. The measuring process is based on phase correlation technique in combination with fast fringe projection in a stereo arrangement. The novelty in the approach is characterized by the following features: A phase correlation between the phase values of the images of two cameras is used for the co-ordinate calculation. This works contrary to the usage of only phase values (phasogrammetry) or classical triangulation (phase values and camera image co-ordinate values) for the determination of the co-ordinates. The main advantage of the method is that the absolute value of the phase at each point does not directly determine the coordinate. Thus errors in the determination of the co-ordinates are prevented. Furthermore, using the epipolar geometry of the stereo-like arrangement the phase unwrapping problem of fringe analysis can be solved. The endoscope like measurement system contains one projection and two camera channels for illumination and observation of the object, respectively. The new system has a measurement field of nearly 25mm × 15mm. The user can measure two or three teeth at one time. So the system can by used for scanning of single tooth up to bridges preparations. In the paper the first realization of the intraoral scanner is described.

  5. Martian terrain - 3D

    Science.gov (United States)

    1997-01-01

    This area of terrain near the Sagan Memorial Station was taken on Sol 3 by the Imager for Mars Pathfinder (IMP). 3D glasses are necessary to identify surface detail.The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.' It stands 1.8 meters above the Martian surface, and has a resolution of two millimeters at a range of two meters.Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  6. 3D Printing and 3D Bioprinting in Pediatrics.

    Science.gov (United States)

    Vijayavenkataraman, Sanjairaj; Fuh, Jerry Y H; Lu, Wen Feng

    2017-07-13

    Additive manufacturing, commonly referred to as 3D printing, is a technology that builds three-dimensional structures and components layer by layer. Bioprinting is the use of 3D printing technology to fabricate tissue constructs for regenerative medicine from cell-laden bio-inks. 3D printing and bioprinting have huge potential in revolutionizing the field of tissue engineering and regenerative medicine. This paper reviews the application of 3D printing and bioprinting in the field of pediatrics.

  7. 3D printing for dummies

    CERN Document Server

    Hausman, Kalani Kirk

    2014-01-01

    Get started printing out 3D objects quickly and inexpensively! 3D printing is no longer just a figment of your imagination. This remarkable technology is coming to the masses with the growing availability of 3D printers. 3D printers create 3-dimensional layered models and they allow users to create prototypes that use multiple materials and colors.  This friendly-but-straightforward guide examines each type of 3D printing technology available today and gives artists, entrepreneurs, engineers, and hobbyists insight into the amazing things 3D printing has to offer. You'll discover methods for

  8. Fourier-wavelet restoration in PET/CT brain studies

    Energy Technology Data Exchange (ETDEWEB)

    Knesaurek, Karin, E-mail: karin.knesaurek@mssm.edu [Division of Nuclear Medicine, The Mount Sinai Medical Center, One Gustave L. Levy Place, New York, NY 10029 (United States)

    2012-10-11

    Our goal is to improve brain PET imaging through the application of a novel, hybrid Fourier-wavelet (WFT) restoration technique. The major limitation of PET studies is a relatively poor resolution in comparison with MRI and CT imaging and there is a need for improved PET imaging. A GE DLS PET/CT 16 slice system was used to acquire the studies. In order to create restoration filters the point source study was performed. The 6-fillable spheres and 3D Hoffman brain phantom studies were acquired and used to test and optimize the restoration approach. The patient data used in the study were acquired in a 3D PET mode, using the standard clinical protocol. Here, we have implemented Fourier-wavelet regularized restoration. In the Fourier domain, the inverse of modulation transfer function was multiplied by a Butterworth low-pass filter, order n=6 and cut-off frequency f=0.35 cycles/pixel. In addition, wavelet (Daubechies, order 2) noise suppression was applied by 'hard threshold'. Hot spheres and 3D Hoffman brain studies showed that the restoration process not only improves resolution and contrast but also improves quantification in 3D PET/CT imaging. The average contrast increase was 19% and the quantification improved in the range 8-20% depending on sphere size. In the restored images, there was no significant increase in noise when compared with the original images. The clinical studies followed brain phantom findings, i.e., the restored images had better contrast and resolution properties, when compared with the original images. The results of the study demonstrate that the quality and quantification of 3D brain {sup 18}F FDG PET images can be significantly improved by Fourier-wavelet (WFT) restoration filtering.

  9. Fourier-wavelet restoration in PET/CT brain studies

    Science.gov (United States)

    Knešaurek, Karin

    2012-10-01

    Our goal is to improve brain PET imaging through the application of a novel, hybrid Fourier-wavelet (WFT) restoration technique. The major limitation of PET studies is a relatively poor resolution in comparison with MRI and CT imaging and there is a need for improved PET imaging. A GE DLS PET/CT 16 slice system was used to acquire the studies. In order to create restoration filters the point source study was performed. The 6-fillable spheres and 3D Hoffman brain phantom studies were acquired and used to test and optimize the restoration approach. The patient data used in the study were acquired in a 3D PET mode, using the standard clinical protocol. Here, we have implemented Fourier-wavelet regularized restoration. In the Fourier domain, the inverse of modulation transfer function was multiplied by a Butterworth low-pass filter, order n=6 and cut-off frequency f=0.35 cycles/pixel. In addition, wavelet (Daubechies, order 2) noise suppression was applied by “hard threshold”. Hot spheres and 3D Hoffman brain studies showed that the restoration process not only improves resolution and contrast but also improves quantification in 3D PET/CT imaging. The average contrast increase was 19% and the quantification improved in the range 8-20% depending on sphere size. In the restored images, there was no significant increase in noise when compared with the original images. The clinical studies followed brain phantom findings, i.e., the restored images had better contrast and resolution properties, when compared with the original images. The results of the study demonstrate that the quality and quantification of 3D brain 18F FDG PET images can be significantly improved by Fourier-wavelet (WFT) restoration filtering.

  10. 3D terahertz synthetic aperture imaging of objects with arbitrary boundaries

    Science.gov (United States)

    Kniffin, G. P.; Zurk, L. M.; Schecklman, S.; Henry, S. C.

    2013-09-01

    Terahertz (THz) imaging has shown promise for nondestructive evaluation (NDE) of a wide variety of manufactured products including integrated circuits and pharmaceutical tablets. Its ability to penetrate many non-polar dielectrics allows tomographic imaging of an object's 3D structure. In NDE applications, the material properties of the target(s) and background media are often well-known a priori and the objective is to identify the presence and/or 3D location of structures or defects within. The authors' earlier work demonstrated the ability to produce accurate 3D images of conductive targets embedded within a high-density polyethylene (HDPE) background. That work assumed a priori knowledge of the refractive index of the HDPE as well as the physical location of the planar air-HDPE boundary. However, many objects of interest exhibit non-planar interfaces, such as varying degrees of curvature over the extent of the surface. Such irregular boundaries introduce refraction effects and other artifacts that distort 3D tomographic images. In this work, two reconstruction techniques are applied to THz synthetic aperture tomography; a holographic reconstruction method that accurately detects the 3D location of an object's irregular boundaries, and a split­-step Fourier algorithm that corrects the artifacts introduced by the surface irregularities. The methods are demonstrated with measurements from a THz time-domain imaging system.

  11. The Performance Comparision of Image Compressed Sensing in Fractional Fourier Domain and Fractional Cosine Domain%图像压缩感知在分数阶Fourier域、分数阶余弦域的性能比较

    Institute of Scientific and Technical Information of China (English)

    2015-01-01

    Sampling is the bridge between analog source signal and digital signal. Based on image signal in the fractional Fourier domain(FRFT), fractional cosine domain(FRCT) with sparse features, this article makes a preliminary comparison of the performance of gray image compression perception in the above two kinds of transform domain. This article uses the method of orthogonal matching pursuit (OMP) to reconstruct the original signal, uses local hada code matrix as measurement matrix, and uses the peak signal-to-noise ratio (PSNR) and mean square error (MSE) as the objective evaluation standard.%模拟信号的数字采样是模拟通向数字信息世界的纽带。本文基于图像信号在分数阶Fourier域(FRFT)、分数阶余弦域(FRCT)域具有稀疏性的特性,对灰度图像压缩感知在以上两种变换域的性能做了初步比较。本文采用正交匹配追踪法(OMP)重构原信号,采用局部哈达码矩阵作为测量矩阵,采用峰值信噪比(PSNR)和均方误差(MSE)作为客观评价标准。

  12. Radiative transfer with scattering for domain-decomposed 3D MHD simulations of cool stellar atmospheres. Numerical methods and application to the quiet, non-magnetic, surface of a solar-type star

    Science.gov (United States)

    Hayek, W.; Asplund, M.; Carlsson, M.; Trampedach, R.; Collet, R.; Gudiksen, B. V.; Hansteen, V. H.; Leenaarts, J.

    2010-07-01

    Aims: We present the implementation of a radiative transfer solver with coherent scattering in the new BIFROST code for radiative magneto-hydrodynamical (MHD) simulations of stellar surface convection. The code is fully parallelized using MPI domain decomposition, which allows for large grid sizes and improved resolution of hydrodynamical structures. We apply the code to simulate the surface granulation in a solar-type star, ignoring magnetic fields, and investigate the importance of coherent scattering for the atmospheric structure. Methods: A scattering term is added to the radiative transfer equation, requiring an iterative computation of the radiation field. We use a short-characteristics-based Gauss-Seidel acceleration scheme to compute radiative flux divergences for the energy equation. The effects of coherent scattering are tested by comparing the temperature stratification of three 3D time-dependent hydrodynamical atmosphere models of a solar-type star: without scattering, with continuum scattering only, and with both continuum and line scattering. Results: We show that continuum scattering does not have a significant impact on the photospheric temperature structure for a star like the Sun. Including scattering in line-blanketing, however, leads to a decrease of temperatures by about 350 K below log10 τ5000 ⪉ -4. The effect is opposite to that of 1D hydrostatic models in radiative equilibrium, where scattering reduces the cooling effect of strong LTE lines in the higher layers of the photosphere. Coherent line scattering also changes the temperature distribution in the high atmosphere, where we observe stronger fluctuations compared to a treatment of lines as true absorbers.

  13. 3D game environments create professional 3D game worlds

    CERN Document Server

    Ahearn, Luke

    2008-01-01

    The ultimate resource to help you create triple-A quality art for a variety of game worlds; 3D Game Environments offers detailed tutorials on creating 3D models, applying 2D art to 3D models, and clear concise advice on issues of efficiency and optimization for a 3D game engine. Using Photoshop and 3ds Max as his primary tools, Luke Ahearn explains how to create realistic textures from photo source and uses a variety of techniques to portray dynamic and believable game worlds.From a modern city to a steamy jungle, learn about the planning and technological considerations for 3D modelin

  14. Superconformal index and 3d-3d correspondence for mapping cylinder/torus

    Energy Technology Data Exchange (ETDEWEB)

    Gang, Dongmin; Koh, Eunkyung [School of Physics, Korea Institute for Advanced Study,85 Hoegiro, Seoul 130-722 (Korea, Republic of); Lee, Sangmin [Center for Theoretical Physics, Seoul National University,1 Gwanak-ro, Seoul 151-747 (Korea, Republic of); Department of Physics and Astronomy, Seoul National University,1 Gwanak-ro, Seoul 151-747 (Korea, Republic of); College of Liberal Studies, Seoul National University,1 Gwanak-ro, Seoul 151-742 (Korea, Republic of); Park, Jaemo [Department of Physics, POSTECH,77 Cheongam-Ro, Pohang 790-784 (Korea, Republic of); Postech Center for Theoretical Physics (PCTP), Postech,77 Cheongam-Ro, Pohang 790-784 (Korea, Republic of)

    2014-01-15

    We probe the 3d-3d correspondence for mapping cylinder/torus using the superconformal index. We focus on the case when the fiber is a once-punctured torus (Σ{sub 1,1}). The corresponding 3d field theories can be realized using duality domain wall theories in 4d N=2{sup ∗} theory. We show that the superconformal indices of the 3d theories are the SL(2,ℂ) Chern-Simons partition function on the mapping cylinder/torus. For the mapping torus, we also consider another realization of the corresponding 3d theory associated with ideal triangulation. The equality between the indices from the two descriptions for the mapping torus theory is reduced to a simple basis change of the Hilbert space for the SL(2,ℂ) Chern-Simons theory on ℝ×Σ{sub 1,1}.

  15. Scoops3D: software to analyze 3D slope stability throughout a digital landscape

    Science.gov (United States)

    Reid, Mark E.; Christian, Sarah B.; Brien, Dianne L.; Henderson, Scott T.

    2015-01-01

    The computer program, Scoops3D, evaluates slope stability throughout a digital landscape represented by a digital elevation model (DEM). The program uses a three-dimensional (3D) method of columns approach to assess the stability of many (typically millions) potential landslides within a user-defined size range. For each potential landslide (or failure), Scoops3D assesses the stability of a rotational, spherical slip surface encompassing many DEM cells using a 3D version of either Bishop’s simplified method or the Ordinary (Fellenius) method of limit-equilibrium analysis. Scoops3D has several options for the user to systematically and efficiently search throughout an entire DEM, thereby incorporating the effects of complex surface topography. In a thorough search, each DEM cell is included in multiple potential failures, and Scoops3D records the lowest stability (factor of safety) for each DEM cell, as well as the size (volume or area) associated with each of these potential landslides. It also determines the least-stable potential failure for the entire DEM. The user has a variety of options for building a 3D domain, including layers or full 3D distributions of strength and pore-water pressures, simplistic earthquake loading, and unsaturated suction conditions. Results from Scoops3D can be readily incorporated into a geographic information system (GIS) or other visualization software. This manual includes information on the theoretical basis for the slope-stability analysis, requirements for constructing and searching a 3D domain, a detailed operational guide (including step-by-step instructions for using the graphical user interface [GUI] software, Scoops3D-i) and input/output file specifications, practical considerations for conducting an analysis, results of verification tests, and multiple examples illustrating the capabilities of Scoops3D. Easy-to-use software installation packages are available for the Windows or Macintosh operating systems; these packages

  16. Scoops3D: software to analyze 3D slope stability throughout a digital landscape

    Science.gov (United States)

    Reid, Mark E.; Christian, Sarah B.; Brien, Dianne L.; Henderson, Scott T.

    2015-01-01

    The computer program, Scoops3D, evaluates slope stability throughout a digital landscape represented by a digital elevation model (DEM). The program uses a three-dimensional (3D) method of columns approach to assess the stability of many (typically millions) potential landslides within a user-defined size range. For each potential landslide (or failure), Scoops3D assesses the stability of a rotational, spherical slip surface encompassing many DEM cells using a 3D version of either Bishop’s simplified method or the Ordinary (Fellenius) method of limit-equilibrium analysis. Scoops3D has several options for the user to systematically and efficiently search throughout an entire DEM, thereby incorporating the effects of complex surface topography. In a thorough search, each DEM cell is included in multiple potential failures, and Scoops3D records the lowest stability (factor of safety) for each DEM cell, as well as the size (volume or area) associated with each of these potential landslides. It also determines the least-stable potential failure for the entire DEM. The user has a variety of options for building a 3D domain, including layers or full 3D distributions of strength and pore-water pressures, simplistic earthquake loading, and unsaturated suction conditions. Results from Scoops3D can be readily incorporated into a geographic information system (GIS) or other visualization software. This manual includes information on the theoretical basis for the slope-stability analysis, requirements for constructing and searching a 3D domain, a detailed operational guide (including step-by-step instructions for using the graphical user interface [GUI] software, Scoops3D-i) and input/output file specifications, practical considerations for conducting an analysis, results of verification tests, and multiple examples illustrating the capabilities of Scoops3D. Easy-to-use software installation packages are available for the Windows or Macintosh operating systems; these packages

  17. 3D Printing an Octohedron

    OpenAIRE

    Aboufadel, Edward F.

    2014-01-01

    The purpose of this short paper is to describe a project to manufacture a regular octohedron on a 3D printer. We assume that the reader is familiar with the basics of 3D printing. In the project, we use fundamental ideas to calculate the vertices and faces of an octohedron. Then, we utilize the OPENSCAD program to create a virtual 3D model and an STereoLithography (.stl) file that can be used by a 3D printer.

  18. Salient Local 3D Features for 3D Shape Retrieval

    CERN Document Server

    Godil, Afzal

    2011-01-01

    In this paper we describe a new formulation for the 3D salient local features based on the voxel grid inspired by the Scale Invariant Feature Transform (SIFT). We use it to identify the salient keypoints (invariant points) on a 3D voxelized model and calculate invariant 3D local feature descriptors at these keypoints. We then use the bag of words approach on the 3D local features to represent the 3D models for shape retrieval. The advantages of the method are that it can be applied to rigid as well as to articulated and deformable 3D models. Finally, this approach is applied for 3D Shape Retrieval on the McGill articulated shape benchmark and then the retrieval results are presented and compared to other methods.

  19. 3D steerable wavelets in practice.

    Science.gov (United States)

    Chenouard, Nicolas; Unser, Michael

    2012-11-01

    We introduce a systematic and practical design for steerable wavelet frames in 3D. Our steerable wavelets are obtained by applying a 3D version of the generalized Riesz transform to a primary isotropic wavelet frame. The novel transform is self-reversible (tight frame) and its elementary constituents (Riesz wavelets) can be efficiently rotated in any 3D direction by forming appropriate linear combinations. Moreover, the basis functions at a given location can be linearly combined to design custom (and adaptive) steerable wavelets. The features of the proposed method are illustrated with the processing and analysis of 3D biomedical data. In particular, we show how those wavelets can be used to characterize directional patterns and to detect edges by means of a 3D monogenic analysis. We also propose a new inverse-problem formalism along with an optimization algorithm for reconstructing 3D images from a sparse set of wavelet-domain edges. The scheme results in high-quality image reconstructions which demonstrate the feature-reduction ability of the steerable wavelets as well as their potential for solving inverse problems.

  20. DESIGN OF 3D TOPOLOGICAL DATA STRUCTURE FOR 3D CADASTRE OBJECTS

    Directory of Open Access Journals (Sweden)

    N. A. Zulkifli

    2016-09-01

    Full Text Available This paper describes the design of 3D modelling and topological data structure for cadastre objects based on Land Administration Domain Model (LADM specifications. Tetrahedral Network (TEN is selected as a 3D topological data structure for this project. Data modelling is based on the LADM standard and it is used five classes (i.e. point, boundary face string, boundary face, tetrahedron and spatial unit. This research aims to enhance the current cadastral system by incorporating 3D topology model based on LADM standard.

  1. Design of 3d Topological Data Structure for 3d Cadastre Objects

    Science.gov (United States)

    Zulkifli, N. A.; Rahman, A. Abdul; Hassan, M. I.

    2016-09-01

    This paper describes the design of 3D modelling and topological data structure for cadastre objects based on Land Administration Domain Model (LADM) specifications. Tetrahedral Network (TEN) is selected as a 3D topological data structure for this project. Data modelling is based on the LADM standard and it is used five classes (i.e. point, boundary face string, boundary face, tetrahedron and spatial unit). This research aims to enhance the current cadastral system by incorporating 3D topology model based on LADM standard.

  2. Fourier analysis

    CERN Document Server

    Stade, Eric

    2005-01-01

    A reader-friendly, systematic introduction to Fourier analysis Rich in both theory and application, Fourier Analysis presents a unique and thorough approach to a key topic in advanced calculus. This pioneering resource tells the full story of Fourier analysis, including its history and its impact on the development of modern mathematical analysis, and also discusses essential concepts and today's applications. Written at a rigorous level, yet in an engaging style that does not dilute the material, Fourier Analysis brings two profound aspects of the discipline to the forefront: the wealth of ap

  3. Urbanisation and 3d Spatial - a Geometric Approach

    Science.gov (United States)

    Duncan, E. E.; Rahman, A. Abdul

    2013-09-01

    Urbanisation creates immense competition for space, this may be attributed to an increase in population owing to domestic and external tourism. Most cities are constantly exploring all avenues in maximising its limited space. Hence, urban or city authorities need to plan, expand and use such three dimensional (3D) space above, on and below the city space. Thus, difficulties in property ownership and the geometric representation of the 3D city space is a major challenge. This research, investigates the concept of representing a geometric topological 3D spatial model capable of representing 3D volume parcels for man-made constructions above and below the 3D surface volume parcel. A review of spatial data models suggests that the 3D TIN (TEN) model is significant and can be used as a unified model. The concepts, logical and physical models of 3D TIN for 3D volumes using tetrahedrons as the base geometry is presented and implemented to show man-made constructions above and below the surface parcel within a user friendly graphical interface. Concepts for 3D topology and 3D analysis are discussed. Simulations of this model for 3D cadastre are implemented. This model can be adopted by most countries to enhance and streamline geometric 3D property ownership for urban centres. 3D TIN concept for spatial modelling can be adopted for the LA_Spatial part of the Land Administration Domain Model (LADM) (ISO/TC211, 2012), this satisfies the concept of 3D volumes.

  4. Motion-compensated hand-held common-path Fourier-domain optical coherence tomography probe for image-guided intervention

    Science.gov (United States)

    Huang, Yong; Song, Cheol; Liu, Xuan; Kang, Jin U.

    2013-03-01

    A motion-compensated hand-held common-path Fourier-domain optical coherence tomography imaging probe has been developed for image guided intervention during microsurgery. A hand-held prototype instrument was designed and fabricated by integrating an imaging fiber probe inside a stainless steel needle which is attached to the ceramic shaft of a piezoelectric motor housed in an aluminum handle. The fiber probe obtains A-scan images. The distance information was extracted from the A-scans to track the sample surface distance and a fixed distance was maintained by a feedback motor control which effectively compensated hand tremor and target movements in the axial direction. Graphical user interface, real-time data processing, and visualization based on a CPU-GPU hybrid programming architecture were developed and used in the implantation of this system. To validate the system, free-hand optical coherence tomography images using various samples were obtained. The system can be easily integrated into microsurgical tools and robotics for a wide range of clinical applications. Such tools could offer physicians the freedom to easily image sites of interest with reduced risk and higher image quality.

  5. Real-time display with large field of view on fourier domain optical coherence tomography at 1310 nm wavelength for dermatology

    Science.gov (United States)

    Xiao, Qing; Hou, Jue; Fu, Ling

    2012-06-01

    A Fourier domain optical coherence tomography (OCT) system with 1310 nm light was demonstrated to study inflammatory human skin and the skin coated with a moisturizer in vivo. By using a graphics processing unit (GPU), the display rate could reach 20 frames/s with 1000 A-scans contained in one image. The field of view (FOV) of the cross-sectional image is 7 mm in the lateral direction and the penetration depth is ˜1 mm in skin. The result shows that, in inflammatory skin, the epidermis became thicker and had a decreased scattering; furthermore, the region of the severe lesion present an uneven thickness of the epidermis compared with the peripheral area. For the result of a finger tip coated with the moisturizer, the antireflection effect was significant and the stratum corneum became more transparent. In this letter, we demonstrated that real-time display with a large FOV could enable screening of a large tissue area; thereby increasing the dermatologic diagnostic potential of the method by permitting a comparison of the lesion and the normal peripheral region.

  6. Holography of 3d-3d correspondence at Large N

    OpenAIRE

    Gang, Dongmin; Kim, Nakwoo; Lee, Sangmin

    2014-01-01

    We study the physics of multiple M5-branes compactified on a hyperbolic 3-manifold. On the one hand, it leads to the 3d-3d correspondence which maps an N = 2 $$ \\mathcal{N}=2 $$ superconformal field theory to a pure Chern-Simons theory on the 3-manifold. On the other hand, it leads to a warped AdS 4 geometry in M-theory holographically dual to the superconformal field theory. Combining the holographic duality and the 3d-3d correspondence, we propose a conjecture for the large N limit of the p...

  7. 3D nanopillar optical antenna photodetectors.

    Science.gov (United States)

    Senanayake, Pradeep; Hung, Chung-Hong; Shapiro, Joshua; Scofield, Adam; Lin, Andrew; Williams, Benjamin S; Huffaker, Diana L

    2012-11-05

    We demonstrate 3D surface plasmon photoresponse in nanopillar arrays resulting in enhanced responsivity due to both Localized Surface Plasmon Resonances (LSPRs) and Surface Plasmon Polariton Bloch Waves (SPP-BWs). The LSPRs are excited due to a partial gold shell coating the nanopillar which acts as a 3D Nanopillar Optical Antenna (NOA) in focusing light into the nanopillar. Angular photoresponse measurements show that SPP-BWs can be spectrally coincident with LSPRs to result in a x2 enhancement in responsivity at 1180 nm. Full-wave Finite Difference Time Domain (FDTD) simulations substantiate both the spatial and spectral coupling of the SPP-BW / LSPR for enhanced absorption and the nature of the LSPR. Geometrical control of the 3D NOA and the self-aligned metal hole lattice allows the hybridization of both localized and propagating surface plasmon modes for enhanced absorption. Hybridized plasmonic modes opens up new avenues in optical antenna design in nanoscale photodetectors.

  8. 3D face analysis for demographic biometrics

    Energy Technology Data Exchange (ETDEWEB)

    Tokola, Ryan A [ORNL; Mikkilineni, Aravind K [ORNL; Boehnen, Chris Bensing [ORNL

    2015-01-01

    Despite being increasingly easy to acquire, 3D data is rarely used for face-based biometrics applications beyond identification. Recent work in image-based demographic biometrics has enjoyed much success, but these approaches suffer from the well-known limitations of 2D representations, particularly variations in illumination, texture, and pose, as well as a fundamental inability to describe 3D shape. This paper shows that simple 3D shape features in a face-based coordinate system are capable of representing many biometric attributes without problem-specific models or specialized domain knowledge. The same feature vector achieves impressive results for problems as diverse as age estimation, gender classification, and race classification.

  9. Fourier transform profilometry based on mean envelope extraction

    Science.gov (United States)

    Zhang, Xiaoxuan; Huang, Shujun; Gao, Nan; Zhang, Zonghua

    2017-02-01

    Based on an image pre-processing algorithm, a three-dimensional (3D) object measurement method is proposed by combining time domain and frequency domain analysis. Firstly, extreme points of sinusoidal fringes under the disturbance of noise are accurately extracted. Secondly, mean envelope of the fringe is obtained through appropriate interpolation method and then removed. Thirdly, phase information is extracted by using specific filtering in Fourier spectrum of the pre-processed fringe pattern. Finally, simulated and experimental results show a good property of the proposed method in accuracy and measurement range. The proposed method can achieve 3D shape of objects having large slopes and/or discontinuous surfaces from one-shot acquisition by using color fringe projection technique and will have wide applications in the fields of fast measurement.

  10. 3D Spectroscopy in Astronomy

    Science.gov (United States)

    Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco

    2011-09-01

    Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.

  11. 3D IBFV : Hardware-Accelerated 3D Flow Visualization

    NARCIS (Netherlands)

    Telea, Alexandru; Wijk, Jarke J. van

    2003-01-01

    We present a hardware-accelerated method for visualizing 3D flow fields. The method is based on insertion, advection, and decay of dye. To this aim, we extend the texture-based IBFV technique for 2D flow visualization in two main directions. First, we decompose the 3D flow visualization problem in a

  12. 3D Elevation Program—Virtual USA in 3D

    Science.gov (United States)

    Lukas, Vicki; Stoker, J.M.

    2016-04-14

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  13. A 3-D Contextual Classifier

    DEFF Research Database (Denmark)

    Larsen, Rasmus

    1997-01-01

    . This includes the specification of a Gaussian distribution for the pixel values as well as a prior distribution for the configuration of class variables within the cross that is m ade of a pixel and its four nearest neighbours. We will extend this algorithm to 3-D, i.e. we will specify a simultaneous Gaussian...... distr ibution for a pixel and its 6 nearest 3-D neighbours, and generalise the class variable configuration distribution within the 3-D cross. The algorithm is tested on a synthetic 3-D multivariate dataset....

  14. 3D Bayesian contextual classifiers

    DEFF Research Database (Denmark)

    Larsen, Rasmus

    2000-01-01

    We extend a series of multivariate Bayesian 2-D contextual classifiers to 3-D by specifying a simultaneous Gaussian distribution for the feature vectors as well as a prior distribution of the class variables of a pixel and its 6 nearest 3-D neighbours.......We extend a series of multivariate Bayesian 2-D contextual classifiers to 3-D by specifying a simultaneous Gaussian distribution for the feature vectors as well as a prior distribution of the class variables of a pixel and its 6 nearest 3-D neighbours....

  15. Using 3D in Visualization

    DEFF Research Database (Denmark)

    Wood, Jo; Kirschenbauer, Sabine; Döllner, Jürgen

    2005-01-01

    to display 3D imagery. The extra cartographic degree of freedom offered by using 3D is explored and offered as a motivation for employing 3D in visualization. The use of VR and the construction of virtual environments exploit navigational and behavioral realism, but become most usefil when combined...... with abstracted representations embedded in a 3D space. The interactions between development of geovisualization, the technology used to implement it and the theory surrounding cartographic representation are explored. The dominance of computing technologies, driven particularly by the gaming industry...

  16. Interactive 3D multimedia content

    CERN Document Server

    Cellary, Wojciech

    2012-01-01

    The book describes recent research results in the areas of modelling, creation, management and presentation of interactive 3D multimedia content. The book describes the current state of the art in the field and identifies the most important research and design issues. Consecutive chapters address these issues. These are: database modelling of 3D content, security in 3D environments, describing interactivity of content, searching content, visualization of search results, modelling mixed reality content, and efficient creation of interactive 3D content. Each chapter is illustrated with example a

  17. 3D for Graphic Designers

    CERN Document Server

    Connell, Ellery

    2011-01-01

    Helping graphic designers expand their 2D skills into the 3D space The trend in graphic design is towards 3D, with the demand for motion graphics, animation, photorealism, and interactivity rapidly increasing. And with the meteoric rise of iPads, smartphones, and other interactive devices, the design landscape is changing faster than ever.2D digital artists who need a quick and efficient way to join this brave new world will want 3D for Graphic Designers. Readers get hands-on basic training in working in the 3D space, including product design, industrial design and visualization, modeling, ani

  18. 3-D printers for libraries

    CERN Document Server

    Griffey, Jason

    2014-01-01

    As the maker movement continues to grow and 3-D printers become more affordable, an expanding group of hobbyists is keen to explore this new technology. In the time-honored tradition of introducing new technologies, many libraries are considering purchasing a 3-D printer. Jason Griffey, an early enthusiast of 3-D printing, has researched the marketplace and seen several systems first hand at the Consumer Electronics Show. In this report he introduces readers to the 3-D printing marketplace, covering such topics asHow fused deposition modeling (FDM) printing workBasic terminology such as build

  19. Digital simulation of 3D turbulence wind field of Sutong Bridge based on measured wind spectra

    Institute of Scientific and Technical Information of China (English)

    Hao WANG; Zhou-hong ZONG; Ai-qun LI; Teng TONG; Jie NIU; Wen-ping DENG

    2012-01-01

    Time domain analysis is an essential implement to study the buffeting behavior of long-span bridges for it can consider the non-linear effect which is significant in long-span bridges.The prerequisite of time domain analysis is the accurate description of 3D turbulence winds.In this paper,some hypotheses for simplifying the 3D turbulence simulation of long-span cable-stayed bridges are conducted,considering the structural characteristics.The turbulence wind which is a 3D multivariate stochastic vector process is converted into four independent ID univariate stochastic processes.Based on recorded wind data from structural health monitoring system (SHMS) of the Sutong Bridge,China,the measured spectra expressions are then presented using the nonlinear least-squares fitting method.Turbulence winds at the Sutong Bridge site are simulated based on the spectral representation method and the Fast Fourier transform (FFT) technique,and the relevant results derived from target spectra including measured spectra and recommended spectra are compared.The reliability and accuracy of the presented turbulence simulation method are validated through comparisons between simulated and target spectra (measured and recommended spectra).The obtained turbulence simulations can not only serve further analysis of the buffeting behavior of the Sutong Bridge,but references for structural anti-wind design in adjacent regions.

  20. Ganglion cell complex and retinal nerve fiber layer measured by fourier-domain optical coherence tomography for early detection of structural damage in patients with preperimetric glaucoma

    Directory of Open Access Journals (Sweden)

    Rolle T

    2011-07-01

    Full Text Available Teresa Rolle, Cristina Briamonte, Daniela Curto, Federico Maria GrignoloEye Clinic, Section of Ophthalmology, Department of Clinical Physiopathology, University of Torino, Torino, ItalyAims: To evaluate the capability of Fourier-domain optical coherence tomography (FD-OCT to detect structural damage in patients with preperimetric glaucoma.Methods: A total of 178 Caucasian subjects were enrolled in this cohort study: 116 preperimetric glaucoma patients and 52 healthy subjects. Using three-dimensional FD-OCT, the participants underwent imaging of the ganglion cell complex (GCC and the optic nerve head. Sensitivity, specificity, likelihood ratios, and predictive values were calculated for all parameters at the first and fifth percentiles. Areas under the curves (AUCs were generated for all parameters and were compared (Delong test. For both the GCC and the optic nerve head protocols, the OR logical disjunction (Boolean logic operator was calculated.Results: The AUCs didn’t significantly differ. Macular global loss volume had the largest AUC (0.81. Specificities were high at both the fifth and first percentiles (up to 97%, but sensitivities were low, especially at the first percentile (55%–27%.Conclusion: Macular and papillary diagnostic accuracies did not differ significantly based on the 95% confidence interval. The computation of the Boolean OR operator has been found to boost diagnostic accuracy. Using the software-provided classification, sensitivity and diagnostic accuracy were low for both the retinal nerve fiber layer and the GCC scans. FD-OCT does not seem to be decisive for early detection of structural damage in patients with no functional impairment. This suggests that there is a need for analysis software to be further refined to enhance glaucoma diagnostic capability.Keywords: OCT, RNFL, GCC, diagnostic accuracy 

  1. Perception of 3D spatial relations for 3D displays

    Science.gov (United States)

    Rosen, Paul; Pizlo, Zygmunt; Hoffmann, Christoph; Popescu, Voicu S.

    2004-05-01

    We test perception of 3D spatial relations in 3D images rendered by a 3D display (Perspecta from Actuality Systems) and compare it to that of a high-resolution flat panel display. 3D images provide the observer with such depth cues as motion parallax and binocular disparity. Our 3D display is a device that renders a 3D image by displaying, in rapid succession, radial slices through the scene on a rotating screen. The image is contained in a glass globe and can be viewed from virtually any direction. In the psychophysical experiment several families of 3D objects are used as stimuli: primitive shapes (cylinders and cuboids), and complex objects (multi-story buildings, cars, and pieces of furniture). Each object has at least one plane of symmetry. On each trial an object or its "distorted" version is shown at an arbitrary orientation. The distortion is produced by stretching an object in a random direction by 40%. This distortion must eliminate the symmetry of an object. The subject's task is to decide whether or not the presented object is distorted under several viewing conditions (monocular/binocular, with/without motion parallax, and near/far). The subject's performance is measured by the discriminability d', which is a conventional dependent variable in signal detection experiments.

  2. 3D Printing for Bricks

    OpenAIRE

    ECT Team, Purdue

    2015-01-01

    Building Bytes, by Brian Peters, is a project that uses desktop 3D printers to print bricks for architecture. Instead of using an expensive custom-made printer, it uses a normal standard 3D printer which is available for everyone and makes it more accessible and also easier for fabrication.

  3. Market study: 3-D eyetracker

    Science.gov (United States)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  4. Improvement of 3D Scanner

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The disadvantage remaining in 3D scanning system and its reasons are discussed. A new host-and-slave structure with high speed image acquisition and processing system is proposed to quicken the image processing and improve the performance of 3D scanning system.

  5. Advanced 3-D Ultrasound Imaging

    DEFF Research Database (Denmark)

    Rasmussen, Morten Fischer

    to produce high quality 3-D images. Because of the large matrix transducers with integrated custom electronics, these systems are extremely expensive. The relatively low price of ultrasound scanners is one of the factors for the widespread use of ultrasound imaging. The high price tag on the high quality 3-D......The main purpose of the PhD project was to develop methods that increase the 3-D ultrasound imaging quality available for the medical personnel in the clinic. Acquiring a 3-D volume gives the medical doctor the freedom to investigate the measured anatomy in any slice desirable after the scan has...... been completed. This allows for precise measurements of organs dimensions and makes the scan more operator independent. Real-time 3-D ultrasound imaging is still not as widespread in use in the clinics as 2-D imaging. A limiting factor has traditionally been the low image quality achievable using...

  6. Using 3D in Visualization

    DEFF Research Database (Denmark)

    Wood, Jo; Kirschenbauer, Sabine; Döllner, Jürgen

    2005-01-01

    The notion of three-dimensionality is applied to five stages of the visualization pipeline. While 3D visulization is most often associated with the visual mapping and representation of data, this chapter also identifies its role in the management and assembly of data, and in the media used...... to display 3D imagery. The extra cartographic degree of freedom offered by using 3D is explored and offered as a motivation for employing 3D in visualization. The use of VR and the construction of virtual environments exploit navigational and behavioral realism, but become most usefil when combined...... with abstracted representations embedded in a 3D space. The interactions between development of geovisualization, the technology used to implement it and the theory surrounding cartographic representation are explored. The dominance of computing technologies, driven particularly by the gaming industry...

  7. 3D printing in dentistry.

    Science.gov (United States)

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.

  8. 3D vision system assessment

    Science.gov (United States)

    Pezzaniti, J. Larry; Edmondson, Richard; Vaden, Justin; Hyatt, Bryan; Chenault, David B.; Kingston, David; Geulen, Vanilynmae; Newell, Scott; Pettijohn, Brad

    2009-02-01

    In this paper, we report on the development of a 3D vision system consisting of a flat panel stereoscopic display and auto-converging stereo camera and an assessment of the system's use for robotic driving, manipulation, and surveillance operations. The 3D vision system was integrated onto a Talon Robot and Operator Control Unit (OCU) such that direct comparisons of the performance of a number of test subjects using 2D and 3D vision systems were possible. A number of representative scenarios were developed to determine which tasks benefited most from the added depth perception and to understand when the 3D vision system hindered understanding of the scene. Two tests were conducted at Fort Leonard Wood, MO with noncommissioned officers ranked Staff Sergeant and Sergeant First Class. The scenarios; the test planning, approach and protocols; the data analysis; and the resulting performance assessment of the 3D vision system are reported.

  9. PLOT3D user's manual

    Science.gov (United States)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  10. 3D strata objectsregistration for Malaysia within the LADM framework

    NARCIS (Netherlands)

    Zulkifli, N.A.; Abdul Rahman, A.; Van Oosterom, P.J.M.

    2011-01-01

    This paper discusses 3D objects registration and modelling for cadastral objects within the Land Administration Domain Model (LADM) framework. A conceptual model as well as the associated technical model for the 2D and 3D objects have been proposed and developed for Malaysia. For both private and

  11. Application of immune algorithm to extremum searching in the fractional Fourier domain%免疫算法在分数阶Fourier变换域极值优化中的应用

    Institute of Scientific and Technical Information of China (English)

    刘清宇; 卫红凯

    2015-01-01

    利用线性调频(Linear Frequency Modulation, LFM)信号在分数阶Fourier域上的聚焦性,通过搜索可实现LFM信号的检测和参数估计。通常采用步进式搜索法,效率低下。为了克服该缺点,通过对分数阶Fourier域优化问题的研究,将免疫算法引入到分数阶Fourier变换极值搜索中。仿真结果表明:该方法优于传统的步进式搜索法。%Based on the concentrated characteristics of linear frequency modulation (LFM) signal in the fractional Fourier domain, the detection and parameter estimation of LFM signal are usually realized by step-based searching method for extremum searching in the fractional Fourier domain. In order to resolve the disadvantage of low efficiency of the step-based searching method, Immune Algorithm is introduced to the fractional Fourier transform for extremum searching with the study of fractional Fourier optimization. Simulation results show that the performance of the Im-mune algorithm is better than that of the traditional step-based method.

  12. ADT-3D Tumor Detection Assistant in 3D

    Directory of Open Access Journals (Sweden)

    Jaime Lazcano Bello

    2008-12-01

    Full Text Available The present document describes ADT-3D (Three-Dimensional Tumor Detector Assistant, a prototype application developed to assist doctors diagnose, detect and locate tumors in the brain by using CT scan. The reader may find on this document an introduction to tumor detection; ADT-3D main goals; development details; description of the product; motivation for its development; result’s study; and areas of applicability.

  13. Unassisted 3D camera calibration

    Science.gov (United States)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  14. Bioprinting of 3D hydrogels.

    Science.gov (United States)

    Stanton, M M; Samitier, J; Sánchez, S

    2015-08-07

    Three-dimensional (3D) bioprinting has recently emerged as an extension of 3D material printing, by using biocompatible or cellular components to build structures in an additive, layer-by-layer methodology for encapsulation and culture of cells. These 3D systems allow for cell culture in a suspension for formation of highly organized tissue or controlled spatial orientation of cell environments. The in vitro 3D cellular environments simulate the complexity of an in vivo environment and natural extracellular matrices (ECM). This paper will focus on bioprinting utilizing hydrogels as 3D scaffolds. Hydrogels are advantageous for cell culture as they are highly permeable to cell culture media, nutrients, and waste products generated during metabolic cell processes. They have the ability to be fabricated in customized shapes with various material properties with dimensions at the micron scale. 3D hydrogels are a reliable method for biocompatible 3D printing and have applications in tissue engineering, drug screening, and organ on a chip models.

  15. Tuotekehitysprojekti: 3D-tulostin

    OpenAIRE

    Pihlajamäki, Janne

    2011-01-01

    Opinnäytetyössä tutustuttiin 3D-tulostamisen teknologiaan. Työssä käytiin läpi 3D-tulostimesta tehty tuotekehitysprojekti. Sen lisäksi esiteltiin yleisellä tasolla tuotekehitysprosessi ja syntyneiden tulosten mahdollisia suojausmenetelmiä. Tavoitteena tässä työssä oli kehittää markkinoilta jo löytyvää kotitulostin-tasoista 3D-laiteteknologiaa lähemmäksi ammattilaistason ratkaisua. Tavoitteeseen pyrittiin keskittymällä parantamaan laitteella saavutettavaa tulostustarkkuutta ja -nopeutt...

  16. Color 3D Reverse Engineering

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    This paper presents a principle and a method of col or 3D laser scanning measurement. Based on the fundamental monochrome 3D measureme nt study, color information capture, color texture mapping, coordinate computati on and other techniques are performed to achieve color 3D measurement. The syste m is designed and composed of a line laser light emitter, one color CCD camera, a motor-driven rotary filter, a circuit card and a computer. Two steps in captu ring object's images in the measurement process: Firs...

  17. Exploration of 3D Printing

    OpenAIRE

    Lin, Zeyu

    2014-01-01

    3D printing technology is introduced and defined in this Thesis. Some methods of 3D printing are illustrated and their principles are explained with pictures. Most of the essential parts are presented with pictures and their effects are explained within the whole system. Problems on Up! Plus 3D printer are solved and a DIY product is made with this machine. The processes of making product are recorded and the items which need to be noticed during the process are the highlight in this th...

  18. Handbook of 3D integration

    CERN Document Server

    Garrou , Philip; Ramm , Peter

    2014-01-01

    Edited by key figures in 3D integration and written by top authors from high-tech companies and renowned research institutions, this book covers the intricate details of 3D process technology.As such, the main focus is on silicon via formation, bonding and debonding, thinning, via reveal and backside processing, both from a technological and a materials science perspective. The last part of the book is concerned with assessing and enhancing the reliability of the 3D integrated devices, which is a prerequisite for the large-scale implementation of this emerging technology. Invaluable reading fo

  19. A FAST ALGORITHM OF DISCRETE GENERALIZED FOURIER TRANSFORMS ON HEXAGON DOMAINS%平行六边形区域上的快速离散傅立叶变换

    Institute of Scientific and Technical Information of China (English)

    孙家昶; 姚继锋

    2004-01-01

    In this paper, we propose a fast algorithm for computing the DGFT (Discrete Generalized Fourier Transforms) on hexagon domains [6], based on the geometric properties of the domain. Our fast algorithm (FDGFT) reduces the computation complexity of DGFT from O(N4) to O(N2 log N). In particulary, for N =2P23P34P45P56P6, the floating point computation working amount equals to(17/2P2 + 16p3 + 135/8p4 + 2424/25p5 + 201/2P6)3N2. Numerical examples are given to access our analysis.

  20. 3-D electromagnetic plasma particle simulations on the Intel Delta parallel computer

    Energy Technology Data Exchange (ETDEWEB)

    Wang, J.; Liewer, P.C. [California Inst. of Tech., Pasadena, CA (United States). Jet Propulsion Lab.; Decyk, V.K. [Univ. of California, Los Angeles, CA (United States)

    1994-12-31

    A three-dimensional electromagnetic PIC code has been developed on the 512 node Intel Touchstone Delta MIMD parallel computer. This code is based on the General Concurrent PIC algorithm which uses a domain decomposition to divide the computation among the processors. The 3D simulation domain can be partitioned into 1-, 2-, or 3-dimensional sub-domains. Particles must be exchanged between processors as they move among the subdomains. The Intel Delta allows one to use this code for very-large-scale simulations (i.e. over 10{sup 8} particles and 10{sup 6} grid cells). The parallel efficiency of this code is measured, and the overall code performance on the Delta is compared with that on Cray supercomputers. It is shown that their code runs with a high parallel efficiency of {ge} 95% for large size problems. The particle push time achieved is 115 nsecs/particle/time step for 162 million particles on 512 nodes. Comparing with the performance on a single processor Cray C90, this represents a factor of 58 speedup. The code uses a finite-difference leap frog method for field solve which is significantly more efficient than fast fourier transforms on parallel computers. The performance of this code on the 128 node Cray T3D will also be discussed.

  1. Conducting polymer 3D microelectrodes

    DEFF Research Database (Denmark)

    Sasso, Luigi; Vazquez, Patricia; Vedarethinam, Indumathi

    2010-01-01

    Conducting polymer 3D microelectrodes have been fabricated for possible future neurological applications. A combination of micro-fabrication techniques and chemical polymerization methods has been used to create pillar electrodes in polyaniline and polypyrrole. The thin polymer films obtained...

  2. Accepting the T3D

    Energy Technology Data Exchange (ETDEWEB)

    Rich, D.O.; Pope, S.C.; DeLapp, J.G.

    1994-10-01

    In April, a 128 PE Cray T3D was installed at Los Alamos National Laboratory`s Advanced Computing Laboratory as part of the DOE`s High-Performance Parallel Processor Program (H4P). In conjunction with CRI, the authors implemented a 30 day acceptance test. The test was constructed in part to help them understand the strengths and weaknesses of the T3D. In this paper, they briefly describe the H4P and its goals. They discuss the design and implementation of the T3D acceptance test and detail issues that arose during the test. They conclude with a set of system requirements that must be addressed as the T3D system evolves.

  3. 3-D Vector Flow Imaging

    DEFF Research Database (Denmark)

    Holbek, Simon

    For the last decade, the field of ultrasonic vector flow imaging has gotten an increasingly attention, as the technique offers a variety of new applications for screening and diagnostics of cardiovascular pathologies. The main purpose of this PhD project was therefore to advance the field of 3-D...... ultrasonic vector flow estimation and bring it a step closer to a clinical application. A method for high frame rate 3-D vector flow estimation in a plane using the transverse oscillation method combined with a 1024 channel 2-D matrix array is presented. The proposed method is validated both through phantom......, if this significant reduction in the element count can still provide precise and robust 3-D vector flow estimates in a plane. The study concludes that the RC array is capable of estimating precise 3-D vector flow both in a plane and in a volume, despite the low channel count. However, some inherent new challenges...

  4. 3D Face Apperance Model

    DEFF Research Database (Denmark)

    Lading, Brian; Larsen, Rasmus; Astrom, K

    2006-01-01

    We build a 3D face shape model, including inter- and intra-shape variations, derive the analytical Jacobian of its resulting 2D rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations......We build a 3D face shape model, including inter- and intra-shape variations, derive the analytical Jacobian of its resulting 2D rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations...

  5. 3D Face Appearance Model

    DEFF Research Database (Denmark)

    Lading, Brian; Larsen, Rasmus; Åström, Kalle

    2006-01-01

    We build a 3d face shape model, including inter- and intra-shape variations, derive the analytical jacobian of its resulting 2d rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations.}......We build a 3d face shape model, including inter- and intra-shape variations, derive the analytical jacobian of its resulting 2d rendered image, and show example of its fitting performance with light, pose, id, expression and texture variations.}...

  6. Main: TATCCAYMOTIFOSRAMY3D [PLACE

    Lifescience Database Archive (English)

    Full Text Available TATCCAYMOTIFOSRAMY3D S000256 01-August-2006 (last modified) kehi TATCCAY motif foun...d in rice (O.s.) RAmy3D alpha-amylase gene promoter; Y=T/C; a GATA motif as its antisense sequence; TATCCAY ...motif and G motif (see S000130) are responsible for sugar repression (Toyofuku et al. 1998); GATA; amylase; sugar; repression; rice (Oryza sativa) TATCCAY ...

  7. MPML3D: Scripting Agents for the 3D Internet.

    Science.gov (United States)

    Prendinger, Helmut; Ullrich, Sebastian; Nakasone, Arturo; Ishizuka, Mitsuru

    2011-05-01

    The aim of this paper is two-fold. First, it describes a scripting language for specifying communicative behavior and interaction of computer-controlled agents ("bots") in the popular three-dimensional (3D) multiuser online world of "Second Life" and the emerging "OpenSimulator" project. While tools for designing avatars and in-world objects in Second Life exist, technology for nonprogrammer content creators of scenarios involving scripted agents is currently missing. Therefore, we have implemented new client software that controls bots based on the Multimodal Presentation Markup Language 3D (MPML3D), a highly expressive XML-based scripting language for controlling the verbal and nonverbal behavior of interacting animated agents. Second, the paper compares Second Life and OpenSimulator platforms and discusses the merits and limitations of each from the perspective of agent control. Here, we also conducted a small study that compares the network performance of both platforms.

  8. 3D-mallinnus ja 3D-animaatiot biovoimalaitoksesta

    OpenAIRE

    Hiltula, Tytti

    2014-01-01

    Opinnäytetyössä tehtiin biovoimalaitoksen piirustuksista 3D-mallinnus ja animaatiot. Työn tarkoituksena oli saada valmiiksi Recwell Oy:lle markkinointiin tarkoitetut kuva- ja videomateriaalit. Työssä perehdyttiin 3D-mallintamisen perustietoihin ja lähtökohtiin sekä animaation laatimiseen. Työ laadittiin kokonaisuudessaan AutoCAD-ohjelmalla, ja työn aikana tutustuttiin huolellisesti myös ohjelman käyttöohjeisiin. Piirustusten mitoituksessa huomattiin jo alkuvaiheessa suuria puutteita, ...

  9. From 3D view to 3D print

    Science.gov (United States)

    Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.

    2014-08-01

    In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers

  10. 2-D-3-D frequency registration using a low-dose radiographic system for knee motion estimation.

    Science.gov (United States)

    Jerbi, Taha; Burdin, Valerie; Leboucher, Julien; Stindel, Eric; Roux, Christian

    2013-03-01

    In this paper, a new method is presented to study the feasibility of the pose and the position estimation of bone structures using a low-dose radiographic system, the entrepreneurial operating system (designed by EOS-Imaging Company). This method is based on a 2-D-3-D registration of EOS bi-planar X-ray images with an EOS 3-D reconstruction. This technique is relevant to such an application thanks to the EOS ability to simultaneously make acquisitions of frontal and sagittal radiographs, and also to produce a 3-D surface reconstruction with its attached software. In this paper, the pose and position of a bone in radiographs is estimated through the link between 3-D and 2-D data. This relationship is established in the frequency domain using the Fourier central slice theorem. To estimate the pose and position of the bone, we define a distance between the 3-D data and the radiographs, and use an iterative optimization approach to converge toward the best estimation. In this paper, we give the mathematical details of the method. We also show the experimental protocol and the results, which validate our approach.

  11. YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters

    Science.gov (United States)

    Schild, Jonas; Seele, Sven; Masuch, Maic

    2012-03-01

    Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.

  12. Materialedreven 3d digital formgivning

    DEFF Research Database (Denmark)

    Hansen, Flemming Tvede

    2010-01-01

    Formålet med forskningsprojektet er for det første at understøtte keramikeren i at arbejde eksperimenterende med digital formgivning, og for det andet at bidrage til en tværfaglig diskurs om brugen af digital formgivning. Forskningsprojektet fokuserer på 3d formgivning og derved på 3d digital...... formgivning og Rapid Prototyping (RP). RP er en fællesbetegnelse for en række af de teknikker, der muliggør at overføre den digitale form til 3d fysisk form. Forskningsprojektet koncentrerer sig om to overordnede forskningsspørgsmål. Det første handler om, hvordan viden og erfaring indenfor det keramiske...... fagområde kan blive udnyttet i forhold til 3d digital formgivning. Det andet handler om, hvad en sådan tilgang kan bidrage med, og hvordan den kan blive udnyttet i et dynamisk samspil med det keramiske materiale i formgivningen af 3d keramiske artefakter. Materialedreven formgivning er karakteriseret af en...

  13. Novel 3D media technologies

    CERN Document Server

    Dagiuklas, Tasos

    2015-01-01

    This book describes recent innovations in 3D media and technologies, with coverage of 3D media capturing, processing, encoding, and adaptation, networking aspects for 3D Media, and quality of user experience (QoE). The contributions are based on the results of the FP7 European Project ROMEO, which focuses on new methods for the compression and delivery of 3D multi-view video and spatial audio, as well as the optimization of networking and compression jointly across the future Internet. The delivery of 3D media to individual users remains a highly challenging problem due to the large amount of data involved, diverse network characteristics and user terminal requirements, as well as the user’s context such as their preferences and location. As the number of visual views increases, current systems will struggle to meet the demanding requirements in terms of delivery of consistent video quality to fixed and mobile users. ROMEO will present hybrid networking solutions that combine the DVB-T2 and DVB-NGH broadcas...

  14. 3D future internet media

    CERN Document Server

    Dagiuklas, Tasos

    2014-01-01

    This book describes recent innovations in 3D media and technologies, with coverage of 3D media capturing, processing, encoding, and adaptation, networking aspects for 3D Media, and quality of user experience (QoE). The main contributions are based on the results of the FP7 European Projects ROMEO, which focus on new methods for the compression and delivery of 3D multi-view video and spatial audio, as well as the optimization of networking and compression jointly across the Future Internet (www.ict-romeo.eu). The delivery of 3D media to individual users remains a highly challenging problem due to the large amount of data involved, diverse network characteristics and user terminal requirements, as well as the user’s context such as their preferences and location. As the number of visual views increases, current systems will struggle to meet the demanding requirements in terms of delivery of constant video quality to both fixed and mobile users. ROMEO will design and develop hybrid-networking solutions that co...

  15. Speaking Volumes About 3-D

    Science.gov (United States)

    2002-01-01

    In 1999, Genex submitted a proposal to Stennis Space Center for a volumetric 3-D display technique that would provide multiple users with a 360-degree perspective to simultaneously view and analyze 3-D data. The futuristic capabilities of the VolumeViewer(R) have offered tremendous benefits to commercial users in the fields of medicine and surgery, air traffic control, pilot training and education, computer-aided design/computer-aided manufacturing, and military/battlefield management. The technology has also helped NASA to better analyze and assess the various data collected by its satellite and spacecraft sensors. Genex capitalized on its success with Stennis by introducing two separate products to the commercial market that incorporate key elements of the 3-D display technology designed under an SBIR contract. The company Rainbow 3D(R) imaging camera is a novel, three-dimensional surface profile measurement system that can obtain a full-frame 3-D image in less than 1 second. The third product is the 360-degree OmniEye(R) video system. Ideal for intrusion detection, surveillance, and situation management, this unique camera system offers a continuous, panoramic view of a scene in real time.

  16. Modification of 3D milling machine to 3D printer

    OpenAIRE

    Halamíček, Lukáš

    2015-01-01

    Tato práce se zabývá přestavbou gravírovací frézky na 3D tiskárnu. V první části se práce zabývá možnými technologiemi 3D tisku a možností jejich využití u přestavby. Dále jsou popsány a vybrány vhodné součásti pro přestavbu. V další části je realizováno řízení ohřevu podložky, trysky a řízení posuvu drátu pomocí softwaru TwinCat od společnosti Beckhoff na průmyslovém počítači. Výsledkem práce by měla být oživená 3D tiskárna. This thesis deals with rebuilding of engraving machine to 3D pri...

  17. Holography of 3d-3d correspondence at large N

    Energy Technology Data Exchange (ETDEWEB)

    Gang, Dongmin [School of Physics, Korea Institute for Advanced Study,85 Hoegiro, Dongdaemun-gu, Seoul, 130-722 (Korea, Republic of); Kim, Nakwoo [Department of Physics and Research Institute of Basic Science, Kyung Hee University,26 Kyungheedaero, Dongdaemun-gu, Seoul, 130-701 (Korea, Republic of); Lee, Sangmin [School of Physics, Korea Institute for Advanced Study,85 Hoegiro, Dongdaemun-gu, Seoul, 130-722 (Korea, Republic of); Center for Theoretical Physics, Department of Physics and Astronomy, College of Liberal Studies,Seoul National University, 1 Gwanakro, Gwanak-gu, Seoul, 151-742 (Korea, Republic of)

    2015-04-20

    We study the physics of multiple M5-branes compactified on a hyperbolic 3-manifold. On the one hand, it leads to the 3d-3d correspondence which maps an N=2 superconformal field theory to a pure Chern-Simons theory on the 3-manifold. On the other hand, it leads to a warped AdS{sub 4} geometry in M-theory holographically dual to the superconformal field theory. Combining the holographic duality and the 3d-3d correspondence, we propose a conjecture for the large N limit of the perturbative free energy of a Chern-Simons theory on hyperbolic 3-manifold. The conjecture claims that the tree, one-loop and two-loop terms all share the same N{sup 3} scaling behavior and are proportional to the volume of the 3-manifold, while the three-loop and higher terms are suppressed at large N. Under mild assumptions, we prove the tree and one-loop parts of the conjecture. For the two-loop part, we test the conjecture numerically in a number of examples and find precise agreement. We also confirm the suppression of higher loop terms in a few examples.

  18. Accurate B-spline-based 3-D interpolation scheme for digital volume correlation

    Science.gov (United States)

    Ren, Maodong; Liang, Jin; Wei, Bin

    2016-12-01

    An accurate and efficient 3-D interpolation scheme, based on sampling theorem and Fourier transform technique, is proposed to reduce the sub-voxel matching error caused by intensity interpolation bias in digital volume correlation. First, the influence factors of the interpolation bias are investigated theoretically using the transfer function of an interpolation filter (henceforth filter) in the Fourier domain. A law that the positional error of a filter can be expressed as a function of fractional position and wave number is found. Then, considering the above factors, an optimized B-spline-based recursive filter, combining B-spline transforms and least squares optimization method, is designed to virtually eliminate the interpolation bias in the process of sub-voxel matching. Besides, given each volumetric image containing different wave number ranges, a Gaussian weighting function is constructed to emphasize or suppress certain of wave number ranges based on the Fourier spectrum analysis. Finally, a novel software is developed and series of validation experiments were carried out to verify the proposed scheme. Experimental results show that the proposed scheme can reduce the interpolation bias to an acceptable level.

  19. Regularisation of 3D Signed Distance Fields

    DEFF Research Database (Denmark)

    Paulsen, Rasmus Reinhold; Bærentzen, Jakob Andreas; Larsen, Rasmus

    2009-01-01

    Signed 3D distance fields are used a in a variety of domains. From shape modelling to surface registration. They are typically computed based on sampled point sets. If the input point set contains holes, the behaviour of the zero-level surface of the distance field is not well defined...... Cholesky factorisation. It is demonstrated that the zero-level surface will act as a membrane after the proposed regularisation. This effectively closes holes in a predictable way. Finally, the performance of the method is tested with a set of synthetic point clouds of increasing complexity....

  20. 3D vector flow imaging

    DEFF Research Database (Denmark)

    Pihl, Michael Johannes

    The main purpose of this PhD project is to develop an ultrasonic method for 3D vector flow imaging. The motivation is to advance the field of velocity estimation in ultrasound, which plays an important role in the clinic. The velocity of blood has components in all three spatial dimensions, yet...... conventional methods can estimate only the axial component. Several approaches for 3D vector velocity estimation have been suggested, but none of these methods have so far produced convincing in vivo results nor have they been adopted by commercial manufacturers. The basis for this project is the Transverse...... on the TO fields are suggested. They can be used to optimize the TO method. In the third part, a TO method for 3D vector velocity estimation is proposed. It employs a 2D phased array transducer and decouples the velocity estimation into three velocity components, which are estimated simultaneously based on 5...

  1. Markerless 3D Face Tracking

    DEFF Research Database (Denmark)

    Walder, Christian; Breidt, Martin; Bulthoff, Heinrich

    2009-01-01

    We present a novel algorithm for the markerless tracking of deforming surfaces such as faces. We acquire a sequence of 3D scans along with color images at 40Hz. The data is then represented by implicit surface and color functions, using a novel partition-of-unity type method of efficiently...... combining local regressors using nearest neighbor searches. Both these functions act on the 4D space of 3D plus time, and use temporal information to handle the noise in individual scans. After interactive registration of a template mesh to the first frame, it is then automatically deformed to track...... the scanned surface, using the variation of both shape and color as features in a dynamic energy minimization problem. Our prototype system yields high-quality animated 3D models in correspondence, at a rate of approximately twenty seconds per timestep. Tracking results for faces and other objects...

  2. 3-D Vector Flow Imaging

    DEFF Research Database (Denmark)

    Holbek, Simon

    studies and in vivo. Phantom measurements are compared with their corresponding reference value, whereas the in vivo measurement is validated against the current golden standard for non-invasive blood velocity estimates, based on magnetic resonance imaging (MRI). The study concludes, that a high precision......, if this significant reduction in the element count can still provide precise and robust 3-D vector flow estimates in a plane. The study concludes that the RC array is capable of estimating precise 3-D vector flow both in a plane and in a volume, despite the low channel count. However, some inherent new challenges......For the last decade, the field of ultrasonic vector flow imaging has gotten an increasingly attention, as the technique offers a variety of new applications for screening and diagnostics of cardiovascular pathologies. The main purpose of this PhD project was therefore to advance the field of 3-D...

  3. Seismic Wave Amplification in 3D Alluvial Basins: 3D/1D Amplification Ratios from Fast Multipole BEM Simulations

    CERN Document Server

    Fajardo, Kristel C Meza; Chaillat, Stéphanie; Lenti, Luca

    2016-01-01

    In this work, we study seismic wave amplification in alluvial basins having 3D standard geometries through the Fast Multipole Boundary Element Method in the frequency domain. We investigate how much 3D amplification differs from the 1D (horizontal layering) case. Considering incident fields of plane harmonic waves, we examine the relationships between the amplification level and the most relevant physical parameters of the problem (impedance contrast, 3D aspect ratio, vertical and oblique incidence of plane waves). The FMBEM results show that the most important parameters for wave amplification are the impedance contrast and the so-called equivalent shape ratio. Using these two parameters, we derive simple rules to compute the fundamental frequency for various 3D basin shapes and the corresponding 3D/1D amplification factor for 5% damping. Effects on amplification due to 3D basin asymmetry are also studied and incorporated in the derived rules.

  4. Microfluidic 3D Helix Mixers

    Directory of Open Access Journals (Sweden)

    Georgette B. Salieb-Beugelaar

    2016-10-01

    Full Text Available Polymeric microfluidic systems are well suited for miniaturized devices with complex functionality, and rapid prototyping methods for 3D microfluidic structures are increasingly used. Mixing at the microscale and performing chemical reactions at the microscale are important applications of such systems and we therefore explored feasibility, mixing characteristics and the ability to control a chemical reaction in helical 3D channels produced by the emerging thread template method. Mixing at the microscale is challenging because channel size reduction for improving solute diffusion comes at the price of a reduced Reynolds number that induces a strictly laminar flow regime and abolishes turbulence that would be desired for improved mixing. Microfluidic 3D helix mixers were rapidly prototyped in polydimethylsiloxane (PDMS using low-surface energy polymeric threads, twisted to form 2-channel and 3-channel helices. Structure and flow characteristics were assessed experimentally by microscopy, hydraulic measurements and chromogenic reaction, and were modeled by computational fluid dynamics. We found that helical 3D microfluidic systems produced by thread templating allow rapid prototyping, can be used for mixing and for controlled chemical reaction with two or three reaction partners at the microscale. Compared to the conventional T-shaped microfluidic system used as a control device, enhanced mixing and faster chemical reaction was found to occur due to the combination of diffusive mixing in small channels and flow folding due to the 3D helix shape. Thus, microfluidic 3D helix mixers can be rapidly prototyped using the thread template method and are an attractive and competitive method for fluid mixing and chemical reactions at the microscale.

  5. 3D Printed Bionic Nanodevices.

    Science.gov (United States)

    Kong, Yong Lin; Gupta, Maneesh K; Johnson, Blake N; McAlpine, Michael C

    2016-06-01

    The ability to three-dimensionally interweave biological and functional materials could enable the creation of bionic devices possessing unique and compelling geometries, properties, and functionalities. Indeed, interfacing high performance active devices with biology could impact a variety of fields, including regenerative bioelectronic medicines, smart prosthetics, medical robotics, and human-machine interfaces. Biology, from the molecular scale of DNA and proteins, to the macroscopic scale of tissues and organs, is three-dimensional, often soft and stretchable, and temperature sensitive. This renders most biological platforms incompatible with the fabrication and materials processing methods that have been developed and optimized for functional electronics, which are typically planar, rigid and brittle. A number of strategies have been developed to overcome these dichotomies. One particularly novel approach is the use of extrusion-based multi-material 3D printing, which is an additive manufacturing technology that offers a freeform fabrication strategy. This approach addresses the dichotomies presented above by (1) using 3D printing and imaging for customized, hierarchical, and interwoven device architectures; (2) employing nanotechnology as an enabling route for introducing high performance materials, with the potential for exhibiting properties not found in the bulk; and (3) 3D printing a range of soft and nanoscale materials to enable the integration of a diverse palette of high quality functional nanomaterials with biology. Further, 3D printing is a multi-scale platform, allowing for the incorporation of functional nanoscale inks, the printing of microscale features, and ultimately the creation of macroscale devices. This blending of 3D printing, novel nanomaterial properties, and 'living' platforms may enable next-generation bionic systems. In this review, we highlight this synergistic integration of the unique properties of nanomaterials with the

  6. 3D Printed Bionic Nanodevices

    Science.gov (United States)

    Kong, Yong Lin; Gupta, Maneesh K.; Johnson, Blake N.; McAlpine, Michael C.

    2016-01-01

    Summary The ability to three-dimensionally interweave biological and functional materials could enable the creation of bionic devices possessing unique and compelling geometries, properties, and functionalities. Indeed, interfacing high performance active devices with biology could impact a variety of fields, including regenerative bioelectronic medicines, smart prosthetics, medical robotics, and human-machine interfaces. Biology, from the molecular scale of DNA and proteins, to the macroscopic scale of tissues and organs, is three-dimensional, often soft and stretchable, and temperature sensitive. This renders most biological platforms incompatible with the fabrication and materials processing methods that have been developed and optimized for functional electronics, which are typically planar, rigid and brittle. A number of strategies have been developed to overcome these dichotomies. One particularly novel approach is the use of extrusion-based multi-material 3D printing, which is an additive manufacturing technology that offers a freeform fabrication strategy. This approach addresses the dichotomies presented above by (1) using 3D printing and imaging for customized, hierarchical, and interwoven device architectures; (2) employing nanotechnology as an enabling route for introducing high performance materials, with the potential for exhibiting properties not found in the bulk; and (3) 3D printing a range of soft and nanoscale materials to enable the integration of a diverse palette of high quality functional nanomaterials with biology. Further, 3D printing is a multi-scale platform, allowing for the incorporation of functional nanoscale inks, the printing of microscale features, and ultimately the creation of macroscale devices. This blending of 3D printing, novel nanomaterial properties, and ‘living’ platforms may enable next-generation bionic systems. In this review, we highlight this synergistic integration of the unique properties of nanomaterials with

  7. Exponential Mixing of the 3D Stochastic Navier-Stokes Equations Driven by Mildly Degenerate Noises

    Energy Technology Data Exchange (ETDEWEB)

    Albeverio, Sergio [Bonn University, Department of Applied Mathematics (Germany); Debussche, Arnaud, E-mail: arnaud.debussche@bretagne.ens-cachan.fr [ENS Cachan Bretagne and IRMAR Campus de Ker Lann (France); Xu Lihu, E-mail: Lihu.Xu@brunel.ac.uk [Brunel University, Mathematics Department (United Kingdom)

    2012-10-15

    We prove the strong Feller property and exponential mixing for 3D stochastic Navier-Stokes equation driven by mildly degenerate noises (i.e. all but finitely many Fourier modes being forced) via a Kolmogorov equation approach.

  8. Ideal 3D asymmetric concentrator

    Energy Technology Data Exchange (ETDEWEB)

    Garcia-Botella, Angel [Departamento Fisica Aplicada a los Recursos Naturales, Universidad Politecnica de Madrid, E.T.S.I. de Montes, Ciudad Universitaria s/n, 28040 Madrid (Spain); Fernandez-Balbuena, Antonio Alvarez; Vazquez, Daniel; Bernabeu, Eusebio [Departamento de Optica, Universidad Complutense de Madrid, Fac. CC. Fisicas, Ciudad Universitaria s/n, 28040 Madrid (Spain)

    2009-01-15

    Nonimaging optics is a field devoted to the design of optical components for applications such as solar concentration or illumination. In this field, many different techniques have been used for producing reflective and refractive optical devices, including reverse engineering techniques. In this paper we apply photometric field theory and elliptic ray bundles method to study 3D asymmetric - without rotational or translational symmetry - concentrators, which can be useful components for nontracking solar applications. We study the one-sheet hyperbolic concentrator and we demonstrate its behaviour as ideal 3D asymmetric concentrator. (author)

  9. 3D digitization of mosaics

    Directory of Open Access Journals (Sweden)

    Anna Maria Manferdini

    2012-11-01

    Full Text Available In this paper we present a methodology developed to access to Cultural Heritage information using digital 3d reality-based models as graphic interfaces. The case studies presented belong to the wide repertoire of mosaics of Ravenna. One of the most peculiar characteristics of mosaics that often limits their digital survey is their multi-scale complexity; nevertheless their models could be used in 3d information systems, for digital exhibitions, for reconstruction aims and to document their conservation conditions in order to conduct restoration interventions in digital environments aiming at speeding and performing more reliable evaluations.

  10. PubChem3D: Biologically relevant 3-D similarity

    Directory of Open Access Journals (Sweden)

    Kim Sunghwan

    2011-07-01

    Full Text Available Abstract Background The use of 3-D similarity techniques in the analysis of biological data and virtual screening is pervasive, but what is a biologically meaningful 3-D similarity value? Can one find statistically significant separation between "active/active" and "active/inactive" spaces? These questions are explored using 734,486 biologically tested chemical structures, 1,389 biological assay data sets, and six different 3-D similarity types utilized by PubChem analysis tools. Results The similarity value distributions of 269.7 billion unique conformer pairs from 734,486 biologically tested compounds (all-against-all from PubChem were utilized to help work towards an answer to the question: what is a biologically meaningful 3-D similarity score? The average and standard deviation for the six similarity measures STST-opt, CTST-opt, ComboTST-opt, STCT-opt, CTCT-opt, and ComboTCT-opt were 0.54 ± 0.10, 0.07 ± 0.05, 0.62 ± 0.13, 0.41 ± 0.11, 0.18 ± 0.06, and 0.59 ± 0.14, respectively. Considering that this random distribution of biologically tested compounds was constructed using a single theoretical conformer per compound (the "default" conformer provided by PubChem, further study may be necessary using multiple diverse conformers per compound; however, given the breadth of the compound set, the single conformer per compound results may still apply to the case of multi-conformer per compound 3-D similarity value distributions. As such, this work is a critical step, covering a very wide corpus of chemical structures and biological assays, creating a statistical framework to build upon. The second part of this study explored the question of whether it was possible to realize a statistically meaningful 3-D similarity value separation between reputed biological assay "inactives" and "actives". Using the terminology of noninactive-noninactive (NN pairs and the noninactive-inactive (NI pairs to represent comparison of the "active/active" and

  11. Vel-IO 3D: A tool for 3D velocity model construction, optimization and time-depth conversion in 3D geological modeling workflow

    Science.gov (United States)

    Maesano, Francesco E.; D'Ambrogi, Chiara

    2017-02-01

    We present Vel-IO 3D, a tool for 3D velocity model creation and time-depth conversion, as part of a workflow for 3D model building. The workflow addresses the management of large subsurface dataset, mainly seismic lines and well logs, and the construction of a 3D velocity model able to describe the variation of the velocity parameters related to strong facies and thickness variability and to high structural complexity. Although it is applicable in many geological contexts (e.g. foreland basins, large intermountain basins), it is particularly suitable in wide flat regions, where subsurface structures have no surface expression. The Vel-IO 3D tool is composed by three scripts, written in Python 2.7.11, that automate i) the 3D instantaneous velocity model building, ii) the velocity model optimization, iii) the time-depth conversion. They determine a 3D geological model that is consistent with the primary geological constraints (e.g. depth of the markers on wells). The proposed workflow and the Vel-IO 3D tool have been tested, during the EU funded Project GeoMol, by the construction of the 3D geological model of a flat region, 5700 km2 in area, located in the central part of the Po Plain. The final 3D model showed the efficiency of the workflow and Vel-IO 3D tool in the management of large amount of data both in time and depth domain. A 4 layer-cake velocity model has been applied to a several thousand (5000-13,000 m) thick succession, with 15 horizons from Triassic up to Pleistocene, complicated by a Mesozoic extensional tectonics and by buried thrusts related to Southern Alps and Northern Apennines.

  12. Single-channel 1.28 Tbit/s-525 km DQPSK transmission using ultrafast time-domain optical Fourier transformation and nonlinear optical loop mirror

    DEFF Research Database (Denmark)

    Guan, Pengyu; Mulvad, Hans Christian Hansen; Tomiyama, Yutaro

    2011-01-01

    developed an ultrafast timedomain optical Fourier transformation technique in a round-trip configuration. By applying this technique to subpicosecond pulses, transmission impairments were greatly reduced, and BER performance below FEC limit was obtained with increased system margin. Copyright © 2011...

  13. Novel Scalable 3-D MT Inverse Solver

    Science.gov (United States)

    Kuvshinov, A. V.; Kruglyakov, M.; Geraskin, A.

    2016-12-01

    We present a new, robust and fast, three-dimensional (3-D) magnetotelluric (MT) inverse solver. As a forward modelling engine a highly-scalable solver extrEMe [1] is used. The (regularized) inversion is based on an iterative gradient-type optimization (quasi-Newton method) and exploits adjoint sources approach for fast calculation of the gradient of the misfit. The inverse solver is able to deal with highly detailed and contrasting models, allows for working (separately or jointly) with any type of MT (single-site and/or inter-site) responses, and supports massive parallelization. Different parallelization strategies implemented in the code allow for optimal usage of available computational resources for a given problem set up. To parameterize an inverse domain a mask approach is implemented, which means that one can merge any subset of forward modelling cells in order to account for (usually) irregular distribution of observation sites. We report results of 3-D numerical experiments aimed at analysing the robustness, performance and scalability of the code. In particular, our computational experiments carried out at different platforms ranging from modern laptops to high-performance clusters demonstrate practically linear scalability of the code up to thousands of nodes. 1. Kruglyakov, M., A. Geraskin, A. Kuvshinov, 2016. Novel accurate and scalable 3-D MT forward solver based on a contracting integral equation method, Computers and Geosciences, in press.

  14. 3D blob dynamics in toroidal geometry

    DEFF Research Database (Denmark)

    Nielsen, Anders Henry; Reiser, Dirk

    In this paper we study the simple case of the dynamics of a density perturbation localized in the edge region of a medium sized tokamak in a full 3D geometry. The 2D evolution of such a perturbation has been studied in details on the low-field side, where the gradient of the magnetic field always...... dynamics in a full 3D tokamak geometry including the edge and SOL region as well. Previous studies with the ATTEMPT code proved that density blobs appear for typical parameters in the TEXTOR tokamak. The code has been prepared for flux driven simulations with detailed control of the blob initial state....... The DIESEL code is an extension of the ESEL code [1]. It solves a simple interchange model in full 3D tokamak geometry, where the toroidal direction is divided into a number of drift planes. On each drift plane the equations are solved in a domain corresponding to the full 2D cross section of the tokamak...

  15. 3D blob dynamics in toroidal geometry

    DEFF Research Database (Denmark)

    Nielsen, Anders Henry; Reiser, Dirk

    . The DIESEL code is an extension of the ESEL code [1]. It solves a simple interchange model in full 3D tokamak geometry, where the toroidal direction is divided into a number of drift planes. On each drift plane the equations are solved in a domain corresponding to the full 2D cross section of the tokamak......In this paper we study the simple case of the dynamics of a density perturbation localized in the edge region of a medium sized tokamak in a full 3D geometry. The 2D evolution of such a perturbation has been studied in details on the low-field side, where the gradient of the magnetic field always...... point radial inward, see e.g. [1-2]. Here, the initial condition is implemented in two very different 3D numerical codes, ATTEMPT [3], and a new developed code, DIESEL (Disk version of ESEL), and the results are compared and discussed in detail. The ATTEMPT code has been employed to study the blob...

  16. Viewing galaxies in 3D

    CERN Document Server

    Krajnović, Davor

    2016-01-01

    Thanks to a technique that reveals galaxies in 3D, astronomers can now show that many galaxies have been wrongly classified. Davor Krajnovi\\'c argues that the classification scheme proposed 85 years ago by Edwin Hubble now needs to be revised.

  17. 3D terahertz beam profiling

    DEFF Research Database (Denmark)

    Pedersen, Pernille Klarskov; Strikwerda, Andrew; Wang, Tianwu

    2013-01-01

    We present a characterization of THz beams generated in both a two-color air plasma and in a LiNbO3 crystal. Using a commercial THz camera, we record intensity images as a function of distance through the beam waist, from which we extract 2D beam profiles and visualize our measurements into 3D beam...

  18. 3D Printing: Exploring Capabilities

    Science.gov (United States)

    Samuels, Kyle; Flowers, Jim

    2015-01-01

    As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

  19. When Art Meets 3D

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The presentation of the vanguard work,My Dream3D,the innovative production by the China Disabled People’s Performing Art Troupe(CDPPAT),directed by Joy Joosang Park,provided the film’s domestic premiere at Beijing’s Olympic Park onApril7.The show provided an intriguing insight not

  20. 3D Printing of Metals

    Directory of Open Access Journals (Sweden)

    Manoj Gupta

    2017-09-01

    Full Text Available The potential benefits that could be derived if the science and technology of 3D printing were to be established have been the crux behind monumental efforts by governments, in most countries, that invest billions of dollars to develop this manufacturing technology.[...

  1. Making Inexpensive 3-D Models

    Science.gov (United States)

    Manos, Harry

    2016-01-01

    Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…

  2. 3D Printing: Exploring Capabilities

    Science.gov (United States)

    Samuels, Kyle; Flowers, Jim

    2015-01-01

    As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

  3. PSH3D fast Poisson solver for petascale DNS

    Science.gov (United States)

    Adams, Darren; Dodd, Michael; Ferrante, Antonino

    2016-11-01

    Direct numerical simulation (DNS) of high Reynolds number, Re >= O (105) , turbulent flows requires computational meshes >= O (1012) grid points, and, thus, the use of petascale supercomputers. DNS often requires the solution of a Helmholtz (or Poisson) equation for pressure, which constitutes the bottleneck of the solver. We have developed a parallel solver of the Helmholtz equation in 3D, PSH3D. The numerical method underlying PSH3D combines a parallel 2D Fast Fourier transform in two spatial directions, and a parallel linear solver in the third direction. For computational meshes up to 81923 grid points, our numerical results show that PSH3D scales up to at least 262k cores of Cray XT5 (Blue Waters). PSH3D has a peak performance 6 × faster than 3D FFT-based methods when used with the 'partial-global' optimization, and for a 81923 mesh solves the Poisson equation in 1 sec using 128k cores. Also, we have verified that the use of PSH3D with the 'partial-global' optimization in our DNS solver does not reduce the accuracy of the numerical solution of the incompressible Navier-Stokes equations.

  4. Priprava 3D modelov za 3D tisk

    OpenAIRE

    2015-01-01

    Po mnenju nekaterih strokovnjakov bo aditivna proizvodnja (ali 3D tiskanje) spremenila proizvodnjo industrijo, saj si bo vsak posameznik lahko natisnil svoj objekt po želji. V diplomski nalogi so predstavljene nekatere tehnologije aditivne proizvodnje. V nadaljevanju diplomske naloge je predstavljena izdelava makete hiše v merilu 1:100, vse od modeliranja do tiskanja. Poseben poudarek je posvečen predelavi modela, da je primeren za tiskanje, kjer je razvit pristop za hitrejše i...

  5. Post processing of 3D models for 3D printing

    OpenAIRE

    2015-01-01

    According to the opinion of some experts the additive manufacturing or 3D printing will change manufacturing industry, because any individual could print their own model according to his or her wishes. In this graduation thesis some of the additive manufacturing technologies are presented. Furthermore in the production of house scale model in 1:100 is presented, starting from modeling to printing. Special attention is given to postprocessing of the building model elements us...

  6. 3-D electromagnetic induction studies using the Swarm constellation: Mapping conductivity anomalies in the Earth's mantle

    DEFF Research Database (Denmark)

    Kuvshinov, A.; Sabaka, T.; Olsen, Nils

    2006-01-01

    satellite data that contain contributions from the core and lithosphere, from the rnagnetosphere and ionosphere (and their Earth-induced counterparts), as well as payload noise has been investigated. The model Studies have shown that C-responses obtained oil a regular grid might be used to map regional deep......An approach is presented to detect deep-seated regional conductivity anomalies by analysis of magnetic observations taken by low-Earth-orbiting satellites. The approach deals with recovery of C-responses on a regular grid and starts with a determination of time series of external and internal....... For validation of the approach, 3 years of realistic synthetic data at Simulated orbits of the forthcoming Swarm constellation of 3 satellites have been used. To obtain the synthetic data for a given 3-D conductivity Earth's model a time-domain scheme has been applied which relies oil a Fourier transformation...

  7. Aperture scanning Fourier ptychographic microscopy

    Science.gov (United States)

    Ou, Xiaoze; Chung, Jaebum; Horstmeyer, Roarke; Yang, Changhuei

    2016-01-01

    Fourier ptychographic microscopy (FPM) is implemented through aperture scanning by an LCOS spatial light modulator at the back focal plane of the objective lens. This FPM configuration enables the capturing of the complex scattered field for a 3D sample both in the transmissive mode and the reflective mode. We further show that by combining with the compressive sensing theory, the reconstructed 2D complex scattered field can be used to recover the 3D sample scattering density. This implementation expands the scope of application for FPM and can be beneficial for areas such as tissue imaging and wafer inspection. PMID:27570705

  8. 3D Printable Graphene Composite.

    Science.gov (United States)

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-07-08

    In human being's history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today's personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite's linear thermal coefficient is below 75 ppm·°C(-1) from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process.

  9. Forensic 3D Scene Reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  10. 3D Printed Robotic Hand

    Science.gov (United States)

    Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.

    2013-01-01

    Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.

  11. New software for 3D fracture network analysis and visualization

    Science.gov (United States)

    Song, J.; Noh, Y.; Choi, Y.; Um, J.; Hwang, S.

    2013-12-01

    This study presents new software to perform analysis and visualization of the fracture network system in 3D. The developed software modules for the analysis and visualization, such as BOUNDARY, DISK3D, FNTWK3D, CSECT and BDM, have been developed using Microsoft Visual Basic.NET and Visualization TookKit (VTK) open-source library. Two case studies revealed that each module plays a role in construction of analysis domain, visualization of fracture geometry in 3D, calculation of equivalent pipes, production of cross-section map and management of borehole data, respectively. The developed software for analysis and visualization of the 3D fractured rock mass can be used to tackle the geomechanical problems related to strength, deformability and hydraulic behaviors of the fractured rock masses.

  12. Medical 3D thermography system

    OpenAIRE

    GRUBIŠIĆ, IVAN

    2011-01-01

    Infrared (IR) thermography determines the surface temperature of an object or human body using thermal IR measurement camera. It is an imaging technology which is contactless and completely non-invasive. These propertiesmake IR thermography a useful method of analysis that is used in various industrial applications to detect, monitor and predict irregularities in many fields from engineering to medical and biological observations. This paper presents a conceptual model of Medical 3D Thermo...

  13. Use of Fourier domain filtering and dynamic programming in finding a titanium coil implant in high voltage x-ray images

    DEFF Research Database (Denmark)

    Nielsen, Henning; Hansen, Jesper Carl

    2006-01-01

    This paper deals with the problem of finding precise position and orientation of a titanium coil implant in humans. Analysis of high voltage X-rays stereo images are used to determine the true 3D position. High voltage images inherently presents with poor contrast. Various image processing techni...... determined the position of the titanium wire within less than 1 mm of ground truth determined from manual analysis of the images....

  14. 3D silicon strip detectors

    Energy Technology Data Exchange (ETDEWEB)

    Parzefall, Ulrich [Physikalisches Institut, Universitaet Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany)], E-mail: ulrich.parzefall@physik.uni-freiburg.de; Bates, Richard [University of Glasgow, Department of Physics and Astronomy, Glasgow G12 8QQ (United Kingdom); Boscardin, Maurizio [FBK-irst, Center for Materials and Microsystems, via Sommarive 18, 38050 Povo di Trento (Italy); Dalla Betta, Gian-Franco [INFN and Universita' di Trento, via Sommarive 14, 38050 Povo di Trento (Italy); Eckert, Simon [Physikalisches Institut, Universitaet Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany); Eklund, Lars; Fleta, Celeste [University of Glasgow, Department of Physics and Astronomy, Glasgow G12 8QQ (United Kingdom); Jakobs, Karl; Kuehn, Susanne [Physikalisches Institut, Universitaet Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany); Lozano, Manuel [Instituto de Microelectronica de Barcelona, IMB-CNM, CSIC, Barcelona (Spain); Pahn, Gregor [Physikalisches Institut, Universitaet Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany); Parkes, Chris [University of Glasgow, Department of Physics and Astronomy, Glasgow G12 8QQ (United Kingdom); Pellegrini, Giulio [Instituto de Microelectronica de Barcelona, IMB-CNM, CSIC, Barcelona (Spain); Pennicard, David [University of Glasgow, Department of Physics and Astronomy, Glasgow G12 8QQ (United Kingdom); Piemonte, Claudio; Ronchin, Sabina [FBK-irst, Center for Materials and Microsystems, via Sommarive 18, 38050 Povo di Trento (Italy); Szumlak, Tomasz [University of Glasgow, Department of Physics and Astronomy, Glasgow G12 8QQ (United Kingdom); Zoboli, Andrea [INFN and Universita' di Trento, via Sommarive 14, 38050 Povo di Trento (Italy); Zorzi, Nicola [FBK-irst, Center for Materials and Microsystems, via Sommarive 18, 38050 Povo di Trento (Italy)

    2009-06-01

    While the Large Hadron Collider (LHC) at CERN has started operation in autumn 2008, plans for a luminosity upgrade to the Super-LHC (sLHC) have already been developed for several years. This projected luminosity increase by an order of magnitude gives rise to a challenging radiation environment for tracking detectors at the LHC experiments. Significant improvements in radiation hardness are required with respect to the LHC. Using a strawman layout for the new tracker of the ATLAS experiment as an example, silicon strip detectors (SSDs) with short strips of 2-3 cm length are foreseen to cover the region from 28 to 60 cm distance to the beam. These SSD will be exposed to radiation levels up to 10{sup 15}N{sub eq}/cm{sup 2}, which makes radiation resistance a major concern for the upgraded ATLAS tracker. Several approaches to increasing the radiation hardness of silicon detectors exist. In this article, it is proposed to combine the radiation hard 3D-design originally conceived for pixel-style applications with the benefits of the established planar technology for strip detectors by using SSDs that have regularly spaced doped columns extending into the silicon bulk under the detector strips. The first 3D SSDs to become available for testing were made in the Single Type Column (STC) design, a technological simplification of the original 3D design. With such 3D SSDs, a small number of prototype sLHC detector modules with LHC-speed front-end electronics as used in the semiconductor tracking systems of present LHC experiments were built. Modules were tested before and after irradiation to fluences of 10{sup 15}N{sub eq}/cm{sup 2}. The tests were performed with three systems: a highly focused IR-laser with 5{mu}m spot size to make position-resolved scans of the charge collection efficiency, an Sr{sup 90}{beta}-source set-up to measure the signal levels for a minimum ionizing particle (MIP), and a beam test with 180 GeV pions at CERN. This article gives a brief overview of

  15. 三维全深度复频域光学相干层析成像系统及其对人体皮肤的在体成像%Three-Dimensional Full-Range Complex Fourier Domain Optical Coherence Tomography System for Vivo Imaging of Human Skin

    Institute of Scientific and Technical Information of China (English)

    南楠; 步鹏; 郭昕; 王向朝

    2012-01-01

    A three-dimensional (3D) full-range complex Fourier domain optical coherence tomography (FDOCT) system based on sinusoidal phase-modulating method is developed for vivo imaging of human skin. A complex spectral interferogram is retrieved based on Fourier transform analysis and bandpass filter of phase-modulated interference spectra, which is recorded with sinusoidal phase modulation introduced during lateral beam scanning. With the system, the depth imaging range is doubled and the signal-to-noise ratio degrading with the lateral scanning is avoided. Also the system is suitable for vivo imaging. 3D vivo full-range OCX images of human skin is achieved with the proposed system. In the images, the stratum corneum, the epidermis and the upper dermis can be clearly identified. By optimizing the sampling number in one modulation period, the complex conjugate rejection ratio is improved, which is about 36 dB.%基于正弦相位调制建立了用于人体皮肤在体三维成像的全深度复频域光学相干层析(FDOCT)成像系统.通过在不同横向位置获取的干涉谱信号中引入正弦相位调制,利用傅里叶变换结合带通滤波的方法重建复干涉谱信号,使成像深度范围扩大为原来的两倍,且适合对活体组织进行在体成像.通过优化相位调制周期内的采样点数,提高了镜像抑制比.基于该系统在体获得了人体皮肤的三维全深度层析图,图中角质层、表皮层及真皮乳突层等皮肤层状结构清晰可见,镜像消除比约为36dB.

  16. Interactive 3D Mars Visualization

    Science.gov (United States)

    Powell, Mark W.

    2012-01-01

    The Interactive 3D Mars Visualization system provides high-performance, immersive visualization of satellite and surface vehicle imagery of Mars. The software can be used in mission operations to provide the most accurate position information for the Mars rovers to date. When integrated into the mission data pipeline, this system allows mission planners to view the location of the rover on Mars to 0.01-meter accuracy with respect to satellite imagery, with dynamic updates to incorporate the latest position information. Given this information so early in the planning process, rover drivers are able to plan more accurate drive activities for the rover than ever before, increasing the execution of science activities significantly. Scientifically, this 3D mapping information puts all of the science analyses to date into geologic context on a daily basis instead of weeks or months, as was the norm prior to this contribution. This allows the science planners to judge the efficacy of their previously executed science observations much more efficiently, and achieve greater science return as a result. The Interactive 3D Mars surface view is a Mars terrain browsing software interface that encompasses the entire region of exploration for a Mars surface exploration mission. The view is interactive, allowing the user to pan in any direction by clicking and dragging, or to zoom in or out by scrolling the mouse or touchpad. This set currently includes tools for selecting a point of interest, and a ruler tool for displaying the distance between and positions of two points of interest. The mapping information can be harvested and shared through ubiquitous online mapping tools like Google Mars, NASA WorldWind, and Worldwide Telescope.

  17. Wireless 3D Chocolate Printer

    Directory of Open Access Journals (Sweden)

    FROILAN G. DESTREZA

    2014-02-01

    Full Text Available This study is for the BSHRM Students of Batangas State University (BatStateU ARASOF for the researchers believe that the Wireless 3D Chocolate Printer would be helpful in their degree program especially on making creative, artistic, personalized and decorative chocolate designs. The researchers used the Prototyping model as procedural method for the successful development and implementation of the hardware and software. This method has five phases which are the following: quick plan, quick design, prototype construction, delivery and feedback and communication. This study was evaluated by the BSHRM Students and the assessment of the respondents regarding the software and hardware application are all excellent in terms of Accuracy, Effecitveness, Efficiency, Maintainability, Reliability and User-friendliness. Also, the overall level of acceptability of the design project as evaluated by the respondents is excellent. With regard to the observation about the best raw material to use in 3D printing, the chocolate is good to use as the printed material is slightly distorted,durable and very easy to prepare; the icing is also good to use as the printed material is not distorted and is very durable but consumes time to prepare; the flour is not good as the printed material is distorted, not durable but it is easy to prepare. The computation of the economic viability level of 3d printer with reference to ROI is 37.14%. The recommendation of the researchers in the design project are as follows: adding a cooling system so that the raw material will be more durable, development of a more simplified version and improving the extrusion process wherein the user do not need to stop the printing process just to replace the empty syringe with a new one.

  18. Virtual 3-D Facial Reconstruction

    Directory of Open Access Journals (Sweden)

    Martin Paul Evison

    2000-06-01

    Full Text Available Facial reconstructions in archaeology allow empathy with people who lived in the past and enjoy considerable popularity with the public. It is a common misconception that facial reconstruction will produce an exact likeness; a resemblance is the best that can be hoped for. Research at Sheffield University is aimed at the development of a computer system for facial reconstruction that will be accurate, rapid, repeatable, accessible and flexible. This research is described and prototypical 3-D facial reconstructions are presented. Interpolation models simulating obesity, ageing and ethnic affiliation are also described. Some strengths and weaknesses in the models, and their potential for application in archaeology are discussed.

  19. How 3-D Movies Work

    Institute of Scientific and Technical Information of China (English)

    吕铁雄

    2011-01-01

    难度:★★★★☆词数:450 建议阅读时间:8分钟 Most people see out of two eyes. This is a basic fact of humanity,but it’s what makes possible the illusion of depth(纵深幻觉) that 3-D movies create. Human eyes are spaced about two inches apart, meaning that each eye gives the brain a slightly different perspective(透视感)on the same object. The brain then uses this variance to quickly determine an object’s distance.

  20. Positional Awareness Map 3D (PAM3D)

    Science.gov (United States)

    Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise

    2012-01-01

    The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.

  1. 3D Printable Graphene Composite

    Science.gov (United States)

    Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong

    2015-07-01

    In human being’s history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today’s personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite’s linear thermal coefficient is below 75 ppm·°C-1 from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process.

  2. 3D medical thermography device

    Science.gov (United States)

    Moghadam, Peyman

    2015-05-01

    In this paper, a novel handheld 3D medical thermography system is introduced. The proposed system consists of a thermal-infrared camera, a color camera and a depth camera rigidly attached in close proximity and mounted on an ergonomic handle. As a practitioner holding the device smoothly moves it around the human body parts, the proposed system generates and builds up a precise 3D thermogram model by incorporating information from each new measurement in real-time. The data is acquired in motion, thus it provides multiple points of view. When processed, these multiple points of view are adaptively combined by taking into account the reliability of each individual measurement which can vary due to a variety of factors such as angle of incidence, distance between the device and the subject and environmental sensor data or other factors influencing a confidence of the thermal-infrared data when captured. Finally, several case studies are presented to support the usability and performance of the proposed system.

  3. 3D Printed Bionic Ears

    Science.gov (United States)

    Mannoor, Manu S.; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A.; Soboyejo, Winston O.; Verma, Naveen; Gracias, David H.; McAlpine, Michael C.

    2013-01-01

    The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the precise anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing. PMID:23635097

  4. 3D printed bionic ears.

    Science.gov (United States)

    Mannoor, Manu S; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A; Soboyejo, Winston O; Verma, Naveen; Gracias, David H; McAlpine, Michael C

    2013-06-12

    The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing.

  5. An overview of 3D topology for LADM-based objects

    NARCIS (Netherlands)

    Zulkifli, N.A.; Rahman, A.A.; Van Oosterom, P.J.M.

    2015-01-01

    This paper reviews 3D topology within Land Administration Domain Model (LADM) international standard. It is important to review characteristic of the different 3D topological models and to choose the most suitable model for certain applications. The characteristic of the different 3D topological mod

  6. 3D biometrics systems and applications

    CERN Document Server

    Zhang, David

    2013-01-01

    Includes discussions on popular 3D imaging technologies, combines them with biometric applications, and then presents real 3D biometric systems Introduces many efficient 3D feature extraction, matching, and fusion algorithms Techniques presented have been supported by experimental results using various 3D biometric classifications

  7. Fiscal 1998 research report. R and D on the nanometer-controlled optical disk system / Magnetic domain- response 3-D optical memory technology (Development of rational use technology of energy); 1998 nendo nanometa seigyo hikari disk system no kenkyu kaihatsu seika hokokusho (jiku oto sanjigen hikari memory gijutsu). Energy shiyo gorika gijutsu kaihatsu

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1999-03-01

    This report describes the fiscal 1998 result on the magnetic domain-response 3-D optical memory of the nanometer-controlled optical disk system. The magnetic domain response technology is a next-generation optical disk technology which copies fine bits recorded on a recording layer on a read-out layer while magnifying them, and detects the bit smaller than a read out optical spot as large signal level. Magnetic domain-response read out of a fine magnetic domain of 0.12{mu}m in mark length and 0.60{mu}m in track width recorded by optical pulse magnetic field modulation was attempted under the conditions of conventional wavelength (around 680nm) and NA (0.55), and succeeded in expanding unobservable signals up to saturated amplitudes. This is equivalent to a 2-D recording density of 10Gbit/in{sup 2}. Crosstalk-free read out was also verified. As for R and D on the magnetic circular polarization enhanced multiple read out system, the 2-wavelength read out system was fabricated by using 515nm Ar laser light and 780nm semiconductor laser light. It was verified in 2- wavelength read out test that the multi-wavelength read out system is reasonable theoretically. (NEDO)

  8. Conducting Polymer 3D Microelectrodes

    Directory of Open Access Journals (Sweden)

    Jenny Emnéus

    2010-12-01

    Full Text Available Conducting polymer 3D microelectrodes have been fabricated for possible future neurological applications. A combination of micro-fabrication techniques and chemical polymerization methods has been used to create pillar electrodes in polyaniline and polypyrrole. The thin polymer films obtained showed uniformity and good adhesion to both horizontal and vertical surfaces. Electrodes in combination with metal/conducting polymer materials have been characterized by cyclic voltammetry and the presence of the conducting polymer film has shown to increase the electrochemical activity when compared with electrodes coated with only metal. An electrochemical characterization of gold/polypyrrole electrodes showed exceptional electrochemical behavior and activity. PC12 cells were finally cultured on the investigated materials as a preliminary biocompatibility assessment. These results show that the described electrodes are possibly suitable for future in-vitro neurological measurements.

  9. A study on the qualitative morphological features of the muscle and subcutaneous shapes in vivo using Fourier-domain common path OCT

    Science.gov (United States)

    Han, Jae-Ho; Xuan, Liu; Kang, Jin U.; Song, Chul-Gyu

    2010-02-01

    In this paper, we have demonstrated a polarization sensitive subcutaneous and muscle imaging based on common path optical coherence tomography (CP-OCT) using near infrared source. The axial and lateral resolutions of our PS-OCT system are 9μm and 6μm, respectively. The internal structural information has been extracted by the real-time signal analysis (Fourier Transform) from the modulated spectral intensity depending on the beam and tissue birefringence. Preliminary results using fresh beef and in vivo rat show that we can visualize the birefringence effect of the tissue collagen fibers in the samples for better image contrast and sensitivity for detection of hidden dermal structures. Compared to conventional CP-OCT, our proposed PS-OCT could provide depth-resolved images, which reflect tissue birefringence.

  10. Supernova Remnant in 3-D

    Science.gov (United States)

    2009-01-01

    of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through. The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave. This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron. High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these structures, but their orientation and

  11. 3D Printing of Graphene Aerogels.

    Science.gov (United States)

    Zhang, Qiangqiang; Zhang, Feng; Medarametla, Sai Pradeep; Li, Hui; Zhou, Chi; Lin, Dong

    2016-04-01

    3D printing of a graphene aerogel with true 3D overhang structures is highlighted. The aerogel is fabricated by combining drop-on-demand 3D printing and freeze casting. The water-based GO ink is ejected and freeze-cast into designed 3D structures. The lightweight (<10 mg cm(-3) ) 3D printed graphene aerogel presents superelastic and high electrical conduction.

  12. A review on the systematic formulation of 3D multiparameter full waveform inversion in viscoelastic medium

    Science.gov (United States)

    Yang, Pengliang; Brossier, Romain; Métivier, Ludovic; Virieux, Jean

    2016-07-01

    In this paper we study 3D multiparameter full waveform inversion (FWI) in viscoelastic media based on the generalized Maxwell/Zener body (GMB/GZB) including arbitrary number of attenuation mechanisms. We present a frequency-domain energy analysis to establish the stability condition of a full anisotropic viscoelastic system, according to zero-valued boundary condition and the elastic-viscoelastic correspondence principle: the real-valued stiffness matrix becomes a complex-valued one in Fourier domain when seismic attenuation is taken into account. We develop a least-squares optimization approach to linearly relate the quality factor with the anelastic coefficients by estimating a set of constants which are independent of the spatial coordinates, which supplies an explicit incorporation of the parameter Q in the general viscoelastic wave equation. By introducing the Lagrangian multipliers into the matrix expression of the wave equation with implicit time integration, we build a systematic formulation of multiparameter full waveform inversion for full anisotropic viscoelastic wave equation, while the equivalent form of the state and adjoint equation with explicit time integration is available to be resolved efficiently. In particular, this formulation lays the foundation for the inversion of the parameter Q in the time domain with full anisotropic viscoelastic properties. In the 3D isotropic viscoelastic settings, the anelastic coefficients and the quality factors using bulk and shear moduli parameterization can be related to the counterparts using P- and S- velocity. Gradients with respect to any other parameter of interest can be found by chain rule. Pioneering numerical validations as well as the real applications of this most generic framework will be carried out to disclose the potential of viscoelastic FWI when adequate high performance computing resources and the field data are available.

  13. A review on the systematic formulation of 3-D multiparameter full waveform inversion in viscoelastic medium

    Science.gov (United States)

    Yang, Pengliang; Brossier, Romain; Métivier, Ludovic; Virieux, Jean

    2016-10-01

    In this paper, we study 3-D multiparameter full waveform inversion (FWI) in viscoelastic media based on the generalized Maxwell/Zener body including arbitrary number of attenuation mechanisms. We present a frequency-domain energy analysis to establish the stability condition of a full anisotropic viscoelastic system, according to zero-valued boundary condition and the elastic-viscoelastic correspondence principle: the real-valued stiffness matrix becomes a complex-valued one in Fourier domain when seismic attenuation is taken into account. We develop a least-squares optimization approach to linearly relate the quality factor with the anelastic coefficients by estimating a set of constants which are independent of the spatial coordinates, which supplies an explicit incorporation of the parameter Q in the general viscoelastic wave equation. By introducing the Lagrangian multipliers into the matrix expression of the wave equation with implicit time integration, we build a systematic formulation of multiparameter FWI for full anisotropic viscoelastic wave equation, while the equivalent form of the state and adjoint equation with explicit time integration is available to be resolved efficiently. In particular, this formulation lays the foundation for the inversion of the parameter Q in the time domain with full anisotropic viscoelastic properties. In the 3-D isotropic viscoelastic settings, the anelastic coefficients and the quality factors using bulk and shear moduli parametrization can be related to the counterparts using P and S velocity. Gradients with respect to any other parameter of interest can be found by chain rule. Pioneering numerical validations as well as the real applications of this most generic framework will be carried out to disclose the potential of viscoelastic FWI when adequate high-performance computing resources and the field data are available.

  14. Critical bifurcation surfaces of 3D discrete dynamics

    Directory of Open Access Journals (Sweden)

    Michael Sonis

    2000-01-01

    Full Text Available This paper deals with the analytical representation of bifurcations of each 3D discrete dynamics depending on the set of bifurcation parameters. The procedure of bifurcation analysis proposed in this paper represents the 3D elaboration and specification of the general algorithm of the n-dimensional linear bifurcation analysis proposed by the author earlier. It is proven that 3D domain of asymptotic stability (attraction of the fixed point for a given 3D discrete dynamics is bounded by three critical bifurcation surfaces: the divergence, flip and flutter surfaces. The analytical construction of these surfaces is achieved with the help of classical Routh–Hurvitz conditions of asymptotic stability. As an application the adjustment process proposed by T. Puu for the Cournot oligopoly model is considered in detail.

  15. Superfast 3D absolute shape measurement using five binary patterns

    Science.gov (United States)

    Hyun, Jae-Sang; Zhang, Song

    2017-03-01

    This paper presents a method that recovers high-quality 3D absolute coordinates point by point with only five binary patterns. Specifically, three dense binary dithered patterns are used to compute the wrapped phase; and the average intensity is combined with two additional binary patterns to determine fringe order pixel by pixel in phase domain. The wrapped phase is temporarily unwrapped point by point by referring to the fringe order. We further developed a computational framework to reduce random noise impact due to dithering, defocusing and random noise. Since only five binary fringe patterns are required to recover one 3D frame, extremely high speed 3D shape measurement can be achieved. For example, we developed a system that captures 2D images at 3333 Hz, and thus performs 3D shape measurement at 667 Hz.

  16. Ontology of a scene based on Java 3D architecture.

    Directory of Open Access Journals (Sweden)

    Rubén González Crespo

    2009-12-01

    Full Text Available The present article seeks to make an approach to the class hierarchy of a scene built with the architecture Java 3D, to develop an ontology of a scene as from the semantic essential components for the semantic structuring of the Web3D. Java was selected because the language recommended by the W3C Consortium for the Development of the Web3D oriented applications as from X3D standard is Xj3D which compositionof their Schemas is based the architecture of Java3D In first instance identifies the domain and scope of the ontology, defining classes and subclasses that comprise from Java3D architecture and the essential elements of a scene, as its point of origin, the field of rotation, translation The limitation of the scene and the definition of shaders, then define the slots that are declared in RDF as a framework for describing the properties of the classes established from identifying thedomain and range of each class, then develops composition of the OWL ontology on SWOOP Finally, be perform instantiations of the ontology building for a Iconosphere object as from class expressions defined.

  17. Real-time depth map manipulation for 3D visualization

    Science.gov (United States)

    Ideses, Ianir; Fishbain, Barak; Yaroslavsky, Leonid

    2009-02-01

    One of the key aspects of 3D visualization is computation of depth maps. Depth maps enables synthesis of 3D video from 2D video and use of multi-view displays. Depth maps can be acquired in several ways. One method is to measure the real 3D properties of the scene objects. Other methods rely on using two cameras and computing the correspondence for each pixel. Once a depth map is acquired for every frame, it can be used to construct its artificial stereo pair. There are many known methods for computing the optical flow between adjacent video frames. The drawback of these methods is that they require extensive computation power and are not very well suited to high quality real-time 3D rendering. One efficient method for computing depth maps is extraction of motion vector information from standard video encoders. In this paper we present methods to improve the 3D visualization quality acquired from compression CODECS by spatial/temporal and logical operations and manipulations. We show how an efficient real time implementation of spatial-temporal local order statistics such as median and local adaptive filtering in 3D-DCT domain can substantially improve the quality of depth maps and consequently 3D video while retaining real-time rendering. Real-time performance is achived by utilizing multi-core technology using standard parallelization algorithms and libraries (OpenMP, IPP).

  18. GPR data processing for 3D fracture mapping in a marble quarry (Thassos, Greece)

    Science.gov (United States)

    Grandjean, G.; Gourry, J. C.

    1996-11-01

    Ground Penetrating Radar (GPR) has been successfully applied to detect and map fractures in marble quarries. The aim was to distinguish quickly intact marketable marble areas from fractured ones in order to improve quarry management. The GPR profiling method was chosen because it is non destructive and quickly provides a detailed image of the subsurface. It was performed in domains corresponding to future working areas in real quarry-exploitation conditions. Field surveying and data processing were adapted to the local characteristics of the fractures: E-W orientation, sub-vertical dip, and karst features. After the GPR profiles had been processed, using methods adapted from seismics (amplitude compensation, filtering and Fourier migration), the interpreted fractures from a 12 × 24 × 15 m zone were incorporated into a 3D model. Due to the low electrical conductivity of the marble, GPR provides penetration depths of about 8 and 15 m, and resolutions of about 1 and 5 cm for frequencies of 900 and 300 MHz respectively. The detection power thus seems to be sufficient to recommend use of this method. As requested by the quarriers, the 3D representation can be used directly by themselves to locate high- or low-quality marble areas. Comparison between the observed surface fractures and the fractures detected using GPR showed reasonable correlation.

  19. A note on singularities of the 3-D Euler equation

    Science.gov (United States)

    Tanveer, S.

    1994-01-01

    In this paper, we consider analytic initial conditions with finite energy, whose complex spatial continuation is a superposition of a smooth background flow and a singular field. Through explicit calculation in the complex plane, we show that under some assumptions, the solution to the 3-D Euler equation ceases to be analytic in the real domain in finite time.

  20. A Hybrid 3D Path Planning Method for UAVs

    DEFF Research Database (Denmark)

    Ortiz-Arroyo, Daniel

    2015-01-01

    This paper presents a hybrid method for path planning in 3D spaces. We propose an improvement to a near-optimal 2D off-line algorithm and a flexible normalized on-line fuzzy controller to find shortest paths. Our method, targeted to low altitude domains, is simple and efficient. Our preliminary resu...

  1. 3D cadastre in the Netherlands: Developments and international applicability

    NARCIS (Netherlands)

    Stoter, J.; Ploeger, H.; Van Oosterom, P.

    This paper presents the design and implementation of the cadastral system extension for registration of 3D rights and restrictions in the Netherlands fitting within the ISO 19152, Land Administration Domain Model (LADM) final draft international standard. The implementation will be conducted in two

  2. 3D multiplexed immunoplasmonics microscopy

    Science.gov (United States)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  3. Subpixel shift with Fourier transform to achieve efficient and high-quality image interpolation

    Science.gov (United States)

    Chen, Qin-Sheng; Weinhous, Martin S.

    1999-05-01

    A new approach to image interpolation is proposed. Different from the conventional scheme, the interpolation of a digital image is achieved with a sub-unity coordinate shift technique. In the approach, the original image is first shifted by sub-unity distances matching the locations where the image values need to be restored. The original and the shifted images are then interspersed together, yielding an interpolated image. High quality sub-unity image shift which is crucial to the approach is accomplished by implementing the shift theorem of Fourier transformation. It is well known that under the Nyquist sampling criterion, the most accurate image interpolation can be achieved with the interpolating function (sinc function). A major drawback is its computation efficiency. The present approach can achieve an interpolation quality as good as that with the sinc function since the sub-unity shift in Fourier domain is equivalent to shifting the sinc function in spatial domain, while the efficiency, thanks to the fast Fourier transform, is very much improved. In comparison to the conventional interpolation techniques such as linear or cubic B-spline interpolation, the interpolation accuracy is significantly enhanced. In order to compensate for the under-sampling effects in the interpolation of 3D medical images owing to a larger inter-slice distance, proper window functions were recommended. The application of the approach to 2- and 3-D CT and MRI images produced satisfactory interpolation results.

  4. Research and development of fringe projection-based methods in 3D shape reconstruction

    Institute of Scientific and Technical Information of China (English)

    WU Lu-shen; PENG Qing-jin

    2006-01-01

    This paper discusses current research and development of fringe projection-based techniques. A system based on Fourier transform profilometry (FTP) is proposed for three-dimensional (3D) shape recovery. The system improves the method of phase unwrapping to gain accurate 3D shapes of objects. The method uses a region-growing algorithm for the path prediction guided by the quality map to increase the recovering accuracy and provides a fast and simple tool for 3D shape recovery. The shape measurement and data recovery are integrated to offer a new method of 3D modelling. Examples are presented to verify the feasibility of the proposed method.

  5. Crowdsourcing Based 3d Modeling

    Science.gov (United States)

    Somogyi, A.; Barsi, A.; Molnar, B.; Lovas, T.

    2016-06-01

    Web-based photo albums that support organizing and viewing the users' images are widely used. These services provide a convenient solution for storing, editing and sharing images. In many cases, the users attach geotags to the images in order to enable using them e.g. in location based applications on social networks. Our paper discusses a procedure that collects open access images from a site frequently visited by tourists. Geotagged pictures showing the image of a sight or tourist attraction are selected and processed in photogrammetric processing software that produces the 3D model of the captured object. For the particular investigation we selected three attractions in Budapest. To assess the geometrical accuracy, we used laser scanner and DSLR as well as smart phone photography to derive reference values to enable verifying the spatial model obtained from the web-album images. The investigation shows how detailed and accurate models could be derived applying photogrammetric processing software, simply by using images of the community, without visiting the site.

  6. Vrste i tehnike 3D modeliranja

    OpenAIRE

    Bernik, Andrija

    2010-01-01

    Proces stvaranja 3D stvarnih ili imaginarnih objekata naziva se 3D modeliranje. Razvoj računalne tehnologije omogućuje korisniku odabir raznih metoda i tehnika kako bi se postigla optimalna učinkovitost. Odabir je vezan za klasično 3D modeliranje ili 3D skeniranje pomoću specijaliziranih programskih i sklopovskih rješenja. 3D tehnikama modeliranja korisnik može izraditi 3D model na nekoliko načina: koristi poligone, krivulje ili hibrid dviju spomenutih tehnika pod nazivom subdivizijsko modeli...

  7. Kuvaus 3D-tulostamisesta hammastekniikassa

    OpenAIRE

    Munne, Mauri; Mustonen, Tuomas; Vähäjylkkä, Jaakko

    2013-01-01

    3D-tulostaminen kehittyy nopeasti ja yleistyy koko ajan. Tulostimien tarkkuuksien kehittyessä 3D-tulostus on ottamassa myös jalansijaa hammastekniikan alalta. Tämän opinnäytetyön tarkoituksena on kuvata 3D-tulostamisen tilaa hammastekniikassa. 3D-tulostaminen on Suomessa vielä melko harvinaista, joten opinnäytetyön tavoitteena on koota yhteen kaikki mahdollinen tieto liittyen 3D-tulostamiseen hammastekniikassa. Tavoitteena on myös 3D-tulostimen testaaminen käytännössä aina suun skannaami...

  8. Forward ramp in 3D

    Science.gov (United States)

    1997-01-01

    Mars Pathfinder's forward rover ramp can be seen successfully unfurled in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. This ramp was not used for the deployment of the microrover Sojourner, which occurred at the end of Sol 2. When this image was taken, Sojourner was still latched to one of the lander's petals, waiting for the command sequence that would execute its descent off of the lander's petal.The image helped Pathfinder scientists determine whether to deploy the rover using the forward or backward ramps and the nature of the first rover traverse. The metallic object at the lower left of the image is the lander's low-gain antenna. The square at the end of the ramp is one of the spacecraft's magnetic targets. Dust that accumulates on the magnetic targets will later be examined by Sojourner's Alpha Proton X-Ray Spectrometer instrument for chemical analysis. At right, a lander petal is visible.The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.' It stands 1.8 meters above the Martian surface, and has a resolution of two millimeters at a range of two meters.Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  9. Sliding Adjustment for 3D Video Representation

    Directory of Open Access Journals (Sweden)

    Galpin Franck

    2002-01-01

    Full Text Available This paper deals with video coding of static scenes viewed by a moving camera. We propose an automatic way to encode such video sequences using several 3D models. Contrary to prior art in model-based coding where 3D models have to be known, the 3D models are automatically computed from the original video sequence. We show that several independent 3D models provide the same functionalities as one single 3D model, and avoid some drawbacks of the previous approaches. To achieve this goal we propose a novel algorithm of sliding adjustment, which ensures consistency of successive 3D models. The paper presents a method to automatically extract the set of 3D models and associate camera positions. The obtained representation can be used for reconstructing the original sequence, or virtual ones. It also enables 3D functionalities such as synthetic object insertion, lightning modification, or stereoscopic visualization. Results on real video sequences are presented.

  10. An interactive multiview 3D display system

    Science.gov (United States)

    Zhang, Zhaoxing; Geng, Zheng; Zhang, Mei; Dong, Hui

    2013-03-01

    The progresses in 3D display systems and user interaction technologies will help more effective 3D visualization of 3D information. They yield a realistic representation of 3D objects and simplifies our understanding to the complexity of 3D objects and spatial relationship among them. In this paper, we describe an autostereoscopic multiview 3D display system with capability of real-time user interaction. Design principle of this autostereoscopic multiview 3D display system is presented, together with the details of its hardware/software architecture. A prototype is built and tested based upon multi-projectors and horizontal optical anisotropic display structure. Experimental results illustrate the effectiveness of this novel 3D display and user interaction system.

  11. Will 3D printers manufacture your meals?

    NARCIS (Netherlands)

    Bommel, K.J.C. van

    2013-01-01

    These days, 3D printers are laying down plastics, metals, resins, and other materials in whatever configurations creative people can dream up. But when the next 3D printing revolution comes, you'll be able to eat it.

  12. 3D ultrasound in fetal spina bifida.

    Science.gov (United States)

    Schramm, T; Gloning, K-P; Minderer, S; Tutschek, B

    2008-12-01

    3D ultrasound can be used to study the fetal spine, but skeletal mode can be inconclusive for the diagnosis of fetal spina bifida. We illustrate a diagnostic approach using 2D and 3D ultrasound and indicate possible pitfalls.

  13. 3D Flash LIDAR Space Laser Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Advanced Scientific Concepts, Inc. (ASC) is a small business that has developed 3D Flash LIDAR systems for space and terrestrial applications. 3D Flash LIDAR is...

  14. Eesti 3D jaoks kitsas / Virge Haavasalu

    Index Scriptorium Estoniae

    Haavasalu, Virge

    2009-01-01

    Produktsioonifirma Digitaalne Sputnik: Kaur ja Kaspar Kallas tegelevad filmide produtseerimise ning 3D digitaalkaamerate tootearendusega (Silicon Imaging LLC). Vendade Kallaste 3D-kaamerast. Kommenteerib Eesti Filmi Sihtasutuse direktor Marge Liiske

  15. Will 3D printers manufacture your meals?

    NARCIS (Netherlands)

    Bommel, K.J.C. van

    2013-01-01

    These days, 3D printers are laying down plastics, metals, resins, and other materials in whatever configurations creative people can dream up. But when the next 3D printing revolution comes, you'll be able to eat it.

  16. 3D printing of microscopic bacterial communities

    National Research Council Canada - National Science Library

    Jodi L. Connell; Eric T. Ritschdorff; Marvin Whiteley; Jason B. Shear

    2013-01-01

    .... Here, we describe a microscopic threedimensional (3D) printing strategy that enables multiple populations of bacteria to be organized within essentially any 3D geometry, including adjacent, nested, and free-floating...

  17. 3D Scanning technology for offshore purposes

    DEFF Research Database (Denmark)

    Christoffersen, Morten Thoft

    2005-01-01

    New scanning technology makes for construction of precision 3D models of production plants and offshore production facilities......New scanning technology makes for construction of precision 3D models of production plants and offshore production facilities...

  18. 3D porosity prediction from seismic inversion and neural networks

    Science.gov (United States)

    Leite, Emilson Pereira; Vidal, Alexandre Campane

    2011-08-01

    In this work, we address the problem of transforming seismic reflection data into an intrinsic rock property model. Specifically, we present an application of a methodology that allows interpreters to obtain effective porosity 3D maps from post-stack 3D seismic amplitude data, using measured density and sonic well log data as constraints. In this methodology, a 3D acoustic impedance model is calculated from seismic reflection amplitudes by applying an L1-norm sparse-spike inversion algorithm in the time domain, followed by a recursive inversion performed in the frequency domain. A 3D low-frequency impedance model is estimated by kriging interpolation of impedance values calculated from well log data. This low-frequency model is added to the inversion result which otherwise provides only a relative numerical scale. To convert acoustic impedance into a single reservoir property, a feed-forward Neural Network (NN) is trained, validated and tested using gamma-ray and acoustic impedance values observed at the well log positions as input and effective porosity values as target. The trained NN is then applied for the whole reservoir volume in order to obtain a 3D effective porosity model. While the particular conclusions drawn from the results obtained in this work cannot be generalized, such results suggest that this workflow can be applied successfully as an aid in reservoir characterization, especially when there is a strong non-linear relationship between effective porosity and acoustic impedance.

  19. Fourier Lucas-Kanade algorithm.

    Science.gov (United States)

    Lucey, Simon; Navarathna, Rajitha; Ashraf, Ahmed Bilal; Sridharan, Sridha

    2013-06-01

    In this paper, we propose a framework for both gradient descent image and object alignment in the Fourier domain. Our method centers upon the classical Lucas & Kanade (LK) algorithm where we represent the source and template/model in the complex 2D Fourier domain rather than in the spatial 2D domain. We refer to our approach as the Fourier LK (FLK) algorithm. The FLK formulation is advantageous when one preprocesses the source image and template/model with a bank of filters (e.g., oriented edges, Gabor, etc.) as 1) it can handle substantial illumination variations, 2) the inefficient preprocessing filter bank step can be subsumed within the FLK algorithm as a sparse diagonal weighting matrix, 3) unlike traditional LK, the computational cost is invariant to the number of filters and as a result is far more efficient, and 4) this approach can be extended to the Inverse Compositional (IC) form of the LK algorithm where nearly all steps (including Fourier transform and filter bank preprocessing) can be precomputed, leading to an extremely efficient and robust approach to gradient descent image matching. Further, these computational savings translate to nonrigid object alignment tasks that are considered extensions of the LK algorithm, such as those found in Active Appearance Models (AAMs).

  20. Laser Based 3D Volumetric Display System

    Science.gov (United States)

    1993-03-01

    Literature, Costa Mesa, CA July 1983. 3. "A Real Time Autostereoscopic Multiplanar 3D Display System", Rodney Don Williams, Felix Garcia, Jr., Texas...8217 .- NUMBERS LASER BASED 3D VOLUMETRIC DISPLAY SYSTEM PR: CD13 0. AUTHOR(S) PE: N/AWIU: DN303151 P. Soltan, J. Trias, W. Robinson, W. Dahlke 7...laser generated 3D volumetric images on a rotating double helix, (where the 3D displays are computer controlled for group viewing with the naked eye

  1. 3D-Printed Millimeter Wave Structures

    Science.gov (United States)

    2016-03-14

    demonstrates the resolution of the printer with a 10 micron nozzle. Figure 2: Measured loss tangent of SEBS and SBS samples. 3D - Printed Millimeter... 3D printing of styrene-butadiene-styrene (SBS) and styrene ethylene/butylene-styrene (SEBS) is used to demonstrate the feasibility of 3D - printed ...Additionally, a dielectric lens is printed which improves the antenna gain of an open-ended WR-28 waveguide from 7 to 8.5 dBi. Keywords: 3D printing

  2. View subspaces for indexing and retrieval of 3D models

    CERN Document Server

    Dutagaci, Helin; Sankur, Bulent; Yemez, Yücel

    2011-01-01

    View-based indexing schemes for 3D object retrieval are gaining popularity since they provide good retrieval results. These schemes are coherent with the theory that humans recognize objects based on their 2D appearances. The viewbased techniques also allow users to search with various queries such as binary images, range images and even 2D sketches. The previous view-based techniques use classical 2D shape descriptors such as Fourier invariants, Zernike moments, Scale Invariant Feature Transform-based local features and 2D Digital Fourier Transform coefficients. These methods describe each object independent of others. In this work, we explore data driven subspace models, such as Principal Component Analysis, Independent Component Analysis and Nonnegative Matrix Factorization to describe the shape information of the views. We treat the depth images obtained from various points of the view sphere as 2D intensity images and train a subspace to extract the inherent structure of the views within a database. We a...

  3. 3D weak lensing with spin wavelets on the ball

    CERN Document Server

    Leistedt, Boris; Kitching, Thomas D; Peiris, Hiranya V

    2015-01-01

    We construct the spin flaglet transform, a wavelet transform to analyse spin signals in three dimensions. Spin flaglets can probe signal content localised simultaneously in space and frequency and, moreover, are separable so that their angular and radial properties can be controlled independently. They are particularly suited to analysing of cosmological observations such as the weak gravitational lensing of galaxies. Such observations have a unique 3D geometrical setting since they are natively made on the sky, have spin angular symmetries, and are extended in the radial direction by additional distance or redshift information. Flaglets are constructed in the harmonic space defined by the Fourier-Laguerre transform, previously defined for scalar functions and extended here to signals with spin symmetries. Thanks to various sampling theorems, both the Fourier-Laguerre and flaglet transforms are theoretically exact when applied to band-limited signals. In other words, in numerical computations the only loss of...

  4. 3D Printing and Its Urologic Applications

    Science.gov (United States)

    Soliman, Youssef; Feibus, Allison H; Baum, Neil

    2015-01-01

    3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology. PMID:26028997

  5. Beowulf 3D: a case study

    Science.gov (United States)

    Engle, Rob

    2008-02-01

    This paper discusses the creative and technical challenges encountered during the production of "Beowulf 3D," director Robert Zemeckis' adaptation of the Old English epic poem and the first film to be simultaneously released in IMAX 3D and digital 3D formats.

  6. Expanding Geometry Understanding with 3D Printing

    Science.gov (United States)

    Cochran, Jill A.; Cochran, Zane; Laney, Kendra; Dean, Mandi

    2016-01-01

    With the rise of personal desktop 3D printing, a wide spectrum of educational opportunities has become available for educators to leverage this technology in their classrooms. Until recently, the ability to create physical 3D models was well beyond the scope, skill, and budget of many schools. However, since desktop 3D printers have become readily…

  7. Imaging a Sustainable Future in 3D

    Science.gov (United States)

    Schuhr, W.; Lee, J. D.; Kanngieser, E.

    2012-07-01

    It is the intention of this paper, to contribute to a sustainable future by providing objective object information based on 3D photography as well as promoting 3D photography not only for scientists, but also for amateurs. Due to the presentation of this article by CIPA Task Group 3 on "3D Photographs in Cultural Heritage", the presented samples are masterpieces of historic as well as of current 3D photography concentrating on cultural heritage. In addition to a report on exemplarily access to international archives of 3D photographs, samples for new 3D photographs taken with modern 3D cameras, as well as by means of a ground based high resolution XLITE staff camera and also 3D photographs taken from a captive balloon and the use of civil drone platforms are dealt with. To advise on optimum suited 3D methodology, as well as to catch new trends in 3D, an updated synoptic overview of the 3D visualization technology, even claiming completeness, has been carried out as a result of a systematic survey. In this respect, e.g., today's lasered crystals might be "early bird" products in 3D, which, due to lack in resolution, contrast and color, remember to the stage of the invention of photography.

  8. 3D Printing and Its Urologic Applications.

    Science.gov (United States)

    Soliman, Youssef; Feibus, Allison H; Baum, Neil

    2015-01-01

    3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology.

  9. Expanding Geometry Understanding with 3D Printing

    Science.gov (United States)

    Cochran, Jill A.; Cochran, Zane; Laney, Kendra; Dean, Mandi

    2016-01-01

    With the rise of personal desktop 3D printing, a wide spectrum of educational opportunities has become available for educators to leverage this technology in their classrooms. Until recently, the ability to create physical 3D models was well beyond the scope, skill, and budget of many schools. However, since desktop 3D printers have become readily…

  10. 3D immersive and interactive learning

    CERN Document Server

    Cai, Yiyu

    2014-01-01

    This book reviews innovative uses of 3D for immersive and interactive learning, covering gifted programs, normal stream and special needs education. Reports on curriculum-based 3D learning in classrooms, and co-curriculum-based 3D student research projects.

  11. 3D Servicescape Model: Atmospheric Qualities of Virtual Reality Retailing

    Directory of Open Access Journals (Sweden)

    Aasim Munir Dad

    2016-02-01

    Full Text Available The purpose of this paper is to provide a 3D servicescape conceptual model which explores the potential effect of 3D virtual reality retail stores’ environment on shoppers' behaviour. Extensive review of literature within two different domains, namely: servicescape models, and retail atmospherics, was carried out in order to propose a conceptual model. Further, eight detailed interviews were conducted to confirm the stimulus dimension of the conceptual model. A 3D servicescape conceptual model is offered on the basis of stimulus-organism-dimension, which proposes that a 3D virtual reality retail (VRR store environment consists of physical, social, socially symbolic and natural dimensions. These dimensions are proposed to affect shoppers’ behaviour through the mediating variables of emotions (pleasure and arousal. An interrelationship between pleasure and arousal, as mediating variables, is also proposed. This research opens a number of new avenues for further research through the proposed model of shoppers’ behaviour in a VRR store environment. Further, a systematic taxonomy development of VRR store environment is attempted through this proposed model that may prove to be an important step in theory building. A comprehensive 3D service scape model along with a large number of propositions is made to define a 3D VRR store environment.

  12. Investigating 3d Reconstruction Methods for Small Artifacts

    Science.gov (United States)

    Evgenikou, V.; Georgopoulos, A.

    2015-02-01

    Small artifacts have always been a real challenge when it comes to 3D modelling. They usually present severe difficulties for their 3D reconstruction. Lately, the demand for the production of 3D models of small artifacts, especially in the cultural heritage domain, has dramatically increased. As with many cases, there are no specifications and standards for this task. This paper investigates the efficiency of several mainly low cost methods for 3D model production of such small artifacts. Moreover, the material, the color and the surface complexity of these objects id also investigated. Both image based and laser scanning methods have been considered as alternative data acquisition methods. The evaluation has been confined to the 3D meshes, as texture depends on the imaging properties, which are not investigated in this project. The resulting meshes have been compared to each other for their completeness, and accuracy. It is hoped that the outcomes of this investigation will be useful to researchers who are planning to embark into mass production of 3D models of small artifacts.

  13. INVESTIGATING 3D RECONSTRUCTION METHODS FOR SMALL ARTIFACTS

    Directory of Open Access Journals (Sweden)

    V. Evgenikou

    2015-02-01

    Full Text Available Small artifacts have always been a real challenge when it comes to 3D modelling. They usually present severe difficulties for their 3D reconstruction. Lately, the demand for the production of 3D models of small artifacts, especially in the cultural heritage domain, has dramatically increased. As with many cases, there are no specifications and standards for this task. This paper investigates the efficiency of several mainly low cost methods for 3D model production of such small artifacts. Moreover, the material, the color and the surface complexity of these objects id also investigated. Both image based and laser scanning methods have been considered as alternative data acquisition methods. The evaluation has been confined to the 3D meshes, as texture depends on the imaging properties, which are not investigated in this project. The resulting meshes have been compared to each other for their completeness, and accuracy. It is hoped that the outcomes of this investigation will be useful to researchers who are planning to embark into mass production of 3D models of small artifacts.

  14. Coherent vortex structures and 3D enstrophy cascade

    CERN Document Server

    Dascaliuc, R

    2011-01-01

    Existence of 2D enstrophy cascade in a suitable mathematical setting, and under suitable conditions compatible with 2D turbulence phenomenology, is known both in the Fourier and in the physical scales. The goal of this paper is to show that the same geometric condition preventing the formation of singularities - 1/2-H\\"older coherence of the vorticity direction - coupled with a suitable condition on a modified Kraichnan scale, and under a certain modulation assumption on evolution of the vorticity, leads to existence of 3D enstrophy cascade in physical scales of the flow.

  15. SMART 3D BUILDING INFRASTRUCTURES: LINKING GIS WITH OTHER DOMAINS

    National Research Council Canada - National Science Library

    Knoth, L; Mittlböck, M; Vockner, B

    2016-01-01

    ...). One part of Enterprise SDIs is building information, to support and enhance contextualization of indoor environments and its corresponding information in form of sensor measurements and other digital resources...

  16. SMART 3D BUILDING INFRASTRUCTURES: LINKING GIS WITH OTHER DOMAINS

    Directory of Open Access Journals (Sweden)

    L. Knoth

    2016-10-01

    Full Text Available While digitization as well as new technologies and paradigms such as the Internet of Things (IoT help solving issues within smart factories, they simultaneously trigger new challenges. The creation of smart factories, whose components communicate in an intelligent manner, is located at the frontier of the virtual and the real world. To connect both worlds, spatio-temporal information can be used to structure and integrate data streams, models and other content such as documents in Enterprise Spatial Data Infrastructures (SDIs. One part of Enterprise SDIs is building information, to support and enhance contextualization of indoor environments and its corresponding information in form of sensor measurements and other digital resources. We identified five major requirements: (1 Three-dimensionality, (2 (Re-use of available data, (3 Use of GIS-principles and standards, (4 Adaptivity, and (5 Completeness. Our novel approach “OLS3D” addresses these requirements through the use of SDI-principles and linked-data strategies. A prototypical implementation was developed in order to show the potential of our approach.

  17. 3D-FFT for Signature Detection in LWIR Images

    Energy Technology Data Exchange (ETDEWEB)

    Medvick, Patricia A.; Lind, Michael A.; Mackey, Patrick S.; Nuffer, Lisa L.; Foote, Harlan P.

    2007-11-20

    Improvements in analysis detection exploitation are possible by applying whitened matched filtering within the Fourier domain to hyperspectral data cubes. We describe an implementation of a Three Dimensional Fast Fourier Transform Whitened Matched Filter (3DFFTMF) approach and, using several example sets of Long Wave Infra Red (LWIR) data cubes, compare the results with those from standard Whitened Matched Filter (WMF) techniques. Since the variability in shape of gaseous plumes precludes the use of spatial conformation in the matched filtering, the 3DFFTMF results were similar to those of two other WMF methods. Including a spatial low-pass filter within the Fourier space can improve signal to noise ratios and therefore improve detection limit by facilitating the mitigation of high frequency clutter. The improvement only occurs if the low-pass filter diameter is smaller than the plume diameter.

  18. Wafer level 3-D ICs process technology

    CERN Document Server

    Tan, Chuan Seng; Reif, L Rafael

    2009-01-01

    This book focuses on foundry-based process technology that enables the fabrication of 3-D ICs. The core of the book discusses the technology platform for pre-packaging wafer lever 3-D ICs. However, this book does not include a detailed discussion of 3-D ICs design and 3-D packaging. This is an edited book based on chapters contributed by various experts in the field of wafer-level 3-D ICs process technology. They are from academia, research labs and industry.

  19. View-based 3-D object retrieval

    CERN Document Server

    Gao, Yue

    2014-01-01

    Content-based 3-D object retrieval has attracted extensive attention recently and has applications in a variety of fields, such as, computer-aided design, tele-medicine,mobile multimedia, virtual reality, and entertainment. The development of efficient and effective content-based 3-D object retrieval techniques has enabled the use of fast 3-D reconstruction and model design. Recent technical progress, such as the development of camera technologies, has made it possible to capture the views of 3-D objects. As a result, view-based 3-D object retrieval has become an essential but challenging res

  20. Investigating Mobile Stereoscopic 3D Touchscreen Interaction

    OpenAIRE

    Colley, Ashley; Hakkila, Jonna; SCHOENING, Johannes; Posti, Maaret

    2013-01-01

    3D output is no longer limited to large screens in cinemas or living rooms. Nowadays more and more mobile devices are equipped with autostereoscopic 3D (S3D) touchscreens. As a consequence interaction with 3D content now also happens whilst users are on the move. In this paper we carried out a user study with 27 participants to assess how mobile interaction, i.e. whilst walking, with mobile S3D devices, differs from interaction with 2D mobile touchscreens. We investigate the difference in tou...

  1. Case study: Beauty and the Beast 3D: benefits of 3D viewing for 2D to 3D conversion

    Science.gov (United States)

    Handy Turner, Tara

    2010-02-01

    From the earliest stages of the Beauty and the Beast 3D conversion project, the advantages of accurate desk-side 3D viewing was evident. While designing and testing the 2D to 3D conversion process, the engineering team at Walt Disney Animation Studios proposed a 3D viewing configuration that not only allowed artists to "compose" stereoscopic 3D but also improved efficiency by allowing artists to instantly detect which image features were essential to the stereoscopic appeal of a shot and which features had minimal or even negative impact. At a time when few commercial 3D monitors were available and few software packages provided 3D desk-side output, the team designed their own prototype devices and collaborated with vendors to create a "3D composing" workstation. This paper outlines the display technologies explored, final choices made for Beauty and the Beast 3D, wish-lists for future development and a few rules of thumb for composing compelling 2D to 3D conversions.

  2. Template-based CTA X-ray angio rigid registration of coronary arteries in frequency domain

    Science.gov (United States)

    Aksoy, Timur; Demirci, Stefanie; Degertekin, Muzaffer; Navab, Nassir; Unal, Gozde

    2013-03-01

    This study performs 3D to 2D rigid registration of segmented pre-operative CTA coronary arteries with a single segmented intra-operative X-ray Angio frame in both frequency and spatial domains for real-time Angiography interventions by C-arm fluoroscopy. Most of the work on rigid registration in literature required a close initial- ization of poses and/or positions because of the abundance of local minima and high complexity that searching algorithms face. This study avoids such setbacks by transforming the projections into translation-invariant Fourier domain for estimating the 3D pose. First, template DRRs as candidate poses of 3D vessels of segmented CTA are produced by rotating the camera (image intensifier) around the DICOM angle values with a wide range as in C-arm setup. We have compared the 3D poses of template DRRs with the real X-ray after equalizing the scales (due to disparities in focal length distances) in 3 domains, namely Fourier magnitude, Fourier phase and Fourier polar. The best pose candidate was chosen by one of the highest similarity measures returned by the methods in these domains. It has been noted in literature that these methods are robust against noise and occlusion which was also validated by our results. Translation of the volume was then recovered by distance-map based BFGS optimization well suited to convex structure of our objective function without local minima due to distance maps. Final results were evaluated in 2D projection space rather than with actual values in 3D due to lack of ground truth, ill-posedness of the problem which we intend to address in future.

  3. Web-based interactive visualization of 3D video mosaics using X3D standard

    Institute of Scientific and Technical Information of China (English)

    CHON Jaechoon; LEE Yang-Won; SHIBASAKI Ryosuke

    2006-01-01

    We present a method of 3D image mosaicing for real 3D representation of roadside buildings, and implement a Web-based interactive visualization environment for the 3D video mosaics created by 3D image mosaicing. The 3D image mosaicing technique developed in our previous work is a very powerful method for creating textured 3D-GIS data without excessive data processing like the laser or stereo system. For the Web-based open access to the 3D video mosaics, we build an interactive visualization environment using X3D, the emerging standard of Web 3D. We conduct the data preprocessing for 3D video mosaics and the X3D modeling for textured 3D data. The data preprocessing includes the conversion of each frame of 3D video mosaics into concatenated image files that can be hyperlinked on the Web. The X3D modeling handles the representation of concatenated images using necessary X3D nodes. By employing X3D as the data format for 3D image mosaics, the real 3D representation of roadside buildings is extended to the Web and mobile service systems.

  4. A data-dependent Fourier filter based on image segmentation for random seismic noise attenuation

    Science.gov (United States)

    Zhou, JiaXiong; Lu, Wenkai; He, Jianwei; Liu, Bing; Ren, Tin

    2015-03-01

    In this paper, we propose a data-dependent Fourier filter (DDFF) based on image segmentation for random seismic noise attenuation. In the proposed method, the original seismic data is divided into some overlapped small blocks. For each block, a local Fourier filter is designed automatically in two steps. At first, a binary mask is obtained by segmenting the Fourier amplitude spectra (FAS) of this block. The histogram of the FAS is used to get the threshold for the FAS segmentation. Secondly, an average filter is applied on the binary mask to get the tapered Fourier filter. In the proposed method, the DDFFs for all blocks are compact and time-space variant. After all blocks are processed, they are merged together to form the filtered result. We illustrate our method by a 2D synthetic seismic data, and give a comparison with the coherent event extraction method in Fourier domain. At last, a real 3D seismic data example demonstrates that the proposed method obtains some promising results.

  5. User-centered 3D geovisualisation

    DEFF Research Database (Denmark)

    Nielsen, Anette Hougaard

    2004-01-01

    3D Geovisualisation is a multidisciplinary science mainly utilizing geographically related data, developing software systems for 3D visualisation and producing relevant models. In this paper the connection between geoinformation stored as 3D objects and the end user is of special interest....... In a broader perspective, the overall aim is to develop a language in 3D Geovisualisation gained through usability projects and the development of a theoretical background. A conceptual level of user-centered 3D Geovisualisation is introduced by applying a categorisation originating from Virtual Reality....... The conceptual level is used to structure and organise user-centered 3D Geovisualisation into four categories: representation, rendering, interface and interaction. The categories reflect a process of development of 3D Geovisualisation where objects can be represented verisimilar to the real world...

  6. 3D laptop for defense applications

    Science.gov (United States)

    Edmondson, Richard; Chenault, David

    2012-06-01

    Polaris Sensor Technologies has developed numerous 3D display systems using a US Army patented approach. These displays have been developed as prototypes for handheld controllers for robotic systems and closed hatch driving, and as part of a TALON robot upgrade for 3D vision, providing depth perception for the operator for improved manipulation and hazard avoidance. In this paper we discuss the prototype rugged 3D laptop computer and its applications to defense missions. The prototype 3D laptop combines full temporal and spatial resolution display with the rugged Amrel laptop computer. The display is viewed through protective passive polarized eyewear, and allows combined 2D and 3D content. Uses include robot tele-operation with live 3D video or synthetically rendered scenery, mission planning and rehearsal, enhanced 3D data interpretation, and simulation.

  7. Boundary conditions and Fourier series truncation errors with 3-D inverse method for radial and mixed flow turbomachines%径流/斜流叶轮全三维反问题方法中的边界条件和级数截断

    Institute of Scientific and Technical Information of China (English)

    田晓沛; 单鹏

    2013-01-01

    研究了脉动流场不同类型的进出口边界条件,比较了端壁边界条件的不同给法,并用基于定常雷诺平均Navier-Stokes(RANS)的商用计算流体动力学(CFD)软件数值研究了进出口、端壁的边界条件和级数截断误差对气动设计的影响.研究表明:进出口边界条件的影响可忽略不计,端壁边界条件的影响较大.取傅里叶级数约前15项后,截断误差的影响可忽略不计.%Different kinds of the inlet and outlet boundary conditions were studied in theory and different specifications of the endwall boundary condition were compared.The impacts of the inlet, outlet, endwall boundary conditions and the series truncation errors on the blade design by a steady Reynolds averaged Navier-Stokes (RANS) solver were studied numerically.The results show that the impacts of the inlet and outlet boundary conditions on the blade design are neglectable, while those of the endwall boundary conditions are relative large.The impacts of the series truncation errors could be neglected if the number of Fourier series terms is more than 15.

  8. The derivative-free Fourier shell identity for photoacoustics.

    Science.gov (United States)

    Baddour, Natalie

    2016-01-01

    In X-ray tomography, the Fourier slice theorem provides a relationship between the Fourier components of the object being imaged and the measured projection data. The Fourier slice theorem is the basis for X-ray Fourier-based tomographic inversion techniques. A similar relationship, referred to as the 'Fourier shell identity' has been previously derived for photoacoustic applications. However, this identity relates the pressure wavefield data function and its normal derivative measured on an arbitrary enclosing aperture to the three-dimensional Fourier transform of the enclosed object evaluated on a sphere. Since the normal derivative of pressure is not normally measured, the applicability of the formulation is limited in this form. In this paper, alternative derivations of the Fourier shell identity in 1D, 2D polar and 3D spherical polar coordinates are presented. The presented formulations do not require the normal derivative of pressure, thereby lending the formulas directly adaptable for Fourier based absorber reconstructions.

  9. World Wind 3D Earth Viewing

    Science.gov (United States)

    Hogan, Patrick; Maxwell, Christopher; Kim, Randolph; Gaskins, Tom

    2007-01-01

    World Wind allows users to zoom from satellite altitude down to any place on Earth, leveraging high-resolution LandSat imagery and SRTM (Shuttle Radar Topography Mission) elevation data to experience Earth in visually rich 3D. In addition to Earth, World Wind can also visualize other planets, and there are already comprehensive data sets for Mars and the Earth's moon, which are as easily accessible as those of Earth. There have been more than 20 million downloads to date, and the software is being used heavily by the Department of Defense due to the code s ability to be extended and the evolution of the code courtesy of NASA and the user community. Primary features include the dynamic access to public domain imagery and its ease of use. All one needs to control World Wind is a two-button mouse. Additional guides and features can be accessed through a simplified menu. A JAVA version will be available soon. Navigation is automated with single clicks of a mouse, or by typing in any location to automatically zoom in to see it. The World Wind install package contains the necessary requirements such as the .NET runtime and managed DirectX library. World Wind can display combinations of data from a variety of sources, including Blue Marble, LandSat 7, SRTM, NASA Scientific Visualization Studio, GLOBE, and much more. A thorough list of features, the user manual, a key chart, and screen shots are available at http://worldwind.arc.nasa.gov.

  10. Validation of optical codes based on 3D nanostructures

    Science.gov (United States)

    Carnicer, Artur; Javidi, Bahram

    2017-05-01

    Image information encoding using random phase masks produce speckle-like noise distributions when the sample is propagated in the Fresnel domain. As a result, information cannot be accessed by simple visual inspection. Phase masks can be easily implemented in practice by attaching cello-tape to the plain-text message. Conventional 2D-phase masks can be generalized to 3D by combining glass and diffusers resulting in a more complex, physical unclonable function. In this communication, we model the behavior of a 3D phase mask using a simple approach: light is propagated trough glass using the angular spectrum of plane waves whereas the diffusor is described as a random phase mask and a blurring effect on the amplitude of the propagated wave. Using different designs for the 3D phase mask and multiple samples, we demonstrate that classification is possible using the k-nearest neighbors and random forests machine learning algorithms.

  11. FROM 3D MODEL DATA TO SEMANTICS

    Directory of Open Access Journals (Sweden)

    My Abdellah Kassimi

    2012-01-01

    Full Text Available The semantic-based 3D models retrieval systems have become necessary since the increase of 3D modelsdatabases. In this paper, we propose a new method for the mapping problem between 3D model data andsemantic data involved in semantic based retrieval for 3D models given by polygonal meshes. First, wefocused on extracting invariant descriptors from the 3D models and analyzing them to efficient semanticannotation and to improve the retrieval accuracy. Selected shape descriptors provide a set of termscommonly used to describe visually a set of objects using linguistic terms and are used as semanticconcept to label 3D model. Second, spatial relationship representing directional, topological anddistance relationships are used to derive other high-level semantic features and to avoid the problem ofautomatic 3D model annotation. Based on the resulting semantic annotation and spatial concepts, anontology for 3D model retrieval is constructed and other concepts can be inferred. This ontology is usedto find similar 3D models for a given query model. We adopted the query by semantic example approach,in which the annotation is performed mostly automatically. The proposed method is implemented in our3D search engine (SB3DMR, tested using the Princeton Shape Benchmark Database.

  12. Implementation of quantum and classical discrete fractional Fourier transforms.

    Science.gov (United States)

    Weimann, Steffen; Perez-Leija, Armando; Lebugle, Maxime; Keil, Robert; Tichy, Malte; Gräfe, Markus; Heilmann, René; Nolte, Stefan; Moya-Cessa, Hector; Weihs, Gregor; Christodoulides, Demetrios N; Szameit, Alexander

    2016-03-23

    Fourier transforms, integer and fractional, are ubiquitous mathematical tools in basic and applied science. Certainly, since the ordinary Fourier transform is merely a particular case of a continuous set of fractional Fourier domains, every property and application of the ordinary Fourier transform becomes a special case of the fractional Fourier transform. Despite the great practical importance of the discrete Fourier transform, implementation of fractional orders of the corresponding discrete operation has been elusive. Here we report classical and quantum optical realizations of the discrete fractional Fourier transform. In the context of classical optics, we implement discrete fractional Fourier transforms of exemplary wave functions and experimentally demonstrate the shift theorem. Moreover, we apply this approach in the quantum realm to Fourier transform separable and path-entangled biphoton wave functions. The proposed approach is versatile and could find applications in various fields where Fourier transforms are essential tools.

  13. RT3D tutorials for GMS users

    Energy Technology Data Exchange (ETDEWEB)

    Clement, T.P. [Pacific Northwest National Lab., Richland, WA (United States); Jones, N.L. [Brigham Young Univ., Provo, UT (United States)

    1998-02-01

    RT3D (Reactive Transport in 3-Dimensions) is a computer code that solves coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in a three dimensional saturated porous media. RT3D was developed from the single-species transport code, MT3D (DoD-1.5, 1997 version). As with MT3D, RT3D also uses the USGS groundwater flow model MODFLOW for computing spatial and temporal variations in groundwater head distribution. This report presents a set of tutorial problems that are designed to illustrate how RT3D simulations can be performed within the Department of Defense Groundwater Modeling System (GMS). GMS serves as a pre- and post-processing interface for RT3D. GMS can be used to define all the input files needed by RT3D code, and later the code can be launched from within GMS and run as a separate application. Once the RT3D simulation is completed, the solution can be imported to GMS for graphical post-processing. RT3D v1.0 supports several reaction packages that can be used for simulating different types of reactive contaminants. Each of the tutorials, described below, provides training on a different RT3D reaction package. Each reaction package has different input requirements, and the tutorials are designed to describe these differences. Furthermore, the tutorials illustrate the various options available in GMS for graphical post-processing of RT3D results. Users are strongly encouraged to complete the tutorials before attempting to use RT3D and GMS on a routine basis.

  14. 3D change detection - Approaches and applications

    Science.gov (United States)

    Qin, Rongjun; Tian, Jiaojiao; Reinartz, Peter

    2016-12-01

    Due to the unprecedented technology development of sensors, platforms and algorithms for 3D data acquisition and generation, 3D spaceborne, airborne and close-range data, in the form of image based, Light Detection and Ranging (LiDAR) based point clouds, Digital Elevation Models (DEM) and 3D city models, become more accessible than ever before. Change detection (CD) or time-series data analysis in 3D has gained great attention due to its capability of providing volumetric dynamics to facilitate more applications and provide more accurate results. The state-of-the-art CD reviews aim to provide a comprehensive synthesis and to simplify the taxonomy of the traditional remote sensing CD techniques, which mainly sit within the boundary of 2D image/spectrum analysis, largely ignoring the particularities of 3D aspects of the data. The inclusion of 3D data for change detection (termed 3D CD), not only provides a source with different modality for analysis, but also transcends the border of traditional top-view 2D pixel/object-based analysis to highly detailed, oblique view or voxel-based geometric analysis. This paper reviews the recent developments and applications of 3D CD using remote sensing and close-range data, in support of both academia and industry researchers who seek for solutions in detecting and analyzing 3D dynamics of various objects of interest. We first describe the general considerations of 3D CD problems in different processing stages and identify CD types based on the information used, being the geometric comparison and geometric-spectral analysis. We then summarize relevant works and practices in urban, environment, ecology and civil applications, etc. Given the broad spectrum of applications and different types of 3D data, we discuss important issues in 3D CD methods. Finally, we present concluding remarks in algorithmic aspects of 3D CD.

  15. 3D Systems” ‘Stuck in the Middle’ of the 3D Printer Boom?

    NARCIS (Netherlands)

    A. Hoffmann (Alan)

    2014-01-01

    textabstract3D Systems, the pioneer of 3D printing, predicted a future where "kids from 8 to 80" could design and print their ideas at home. By 2013, 9 years after the creation of the first working 3D printer, there were more than 30 major 3D printing companies competing for market share. 3DS and it

  16. 3D-Barolo: 3D fitting tool for the kinematics of galaxies

    NARCIS (Netherlands)

    Di Teodoro, E. M.; Fraternali, F.

    3D-Barolo (3D-Based Analysis of Rotating Object via Line Observations) or BBarolo is a tool for fitting 3D tilted-ring models to emission-line datacubes. BBarolo works with 3D FITS files, i.e. image arrays with two spatial and one spectral dimensions. BBarolo recovers the true rotation curve and

  17. 3D Systems” ‘Stuck in the Middle’ of the 3D Printer Boom?

    NARCIS (Netherlands)

    A. Hoffmann (Alan)

    2014-01-01

    textabstract3D Systems, the pioneer of 3D printing, predicted a future where "kids from 8 to 80" could design and print their ideas at home. By 2013, 9 years after the creation of the first working 3D printer, there were more than 30 major 3D printing companies competing for market share. 3DS and

  18. Stability Criteria of 3D Inviscid Shears

    CERN Document Server

    Li, Y Charles

    2009-01-01

    The classical plane Couette flow, plane Poiseuille flow, and pipe Poiseuille flow share some universal 3D steady coherent structure in the form of "streak-roll-critical layer". As the Reynolds number approaches infinity, the steady coherent structure approaches a 3D limiting shear of the form ($U(y,z), 0, 0$) in velocity variables. All such 3D shears are steady states of the 3D Euler equations. This raises the importance of investigating the stability of such inviscid 3D shears in contrast to the classical Rayleigh theory of inviscid 2D shears. Several general criteria of stability for such inviscid 3D shears are derived. In the Appendix, an argument is given to show that a 2D limiting shear can only be the classical laminar shear.

  19. 3D-tulostus : case Printrbot

    OpenAIRE

    Arvekari, Lassi

    2013-01-01

    Opinnäytetyön tavoitteena on selvittää 3D-tulostustekniikan perusteita ja 3D-tulostuksen nykytilannetta. 3D-tulostukseen sopivien mallien luomista tutkitaan ja mallin tekemiseen on etsitty toimivia ohjesääntöjä. Tärkeä osa työtä on tutkia mitä vaiheita 3D-tulostimen hankinnassa kotikäyttöön tulee vastaan. Käytännön kokeita varten opinnäytetyössä on case Printrbot, jossa on tutustuttu edulliseen 3D-tulostuslaitteeseen kokoonpanosta lähtien. Työn kuluessa selvisi että edulliset 3D-tulos...

  20. ERP system for 3D printing industry

    Directory of Open Access Journals (Sweden)

    Deaky Bogdan

    2017-01-01

    Full Text Available GOCREATE is an original cloud-based production management and optimization service which helps 3D printing service providers to use their resources better. The proposed Enterprise Resource Planning system can significantly increase income through improved productivity. With GOCREATE, the 3D printing service providers get a much higher production efficiency at a much lower licensing cost, to increase their competitiveness in the fast growing 3D printing market.