WorldWideScience

Sample records for saggital optical tomography

  1. Dental Optical Coherence Tomography

    OpenAIRE

    Kun-Feng Lin; Jui-che Tsai; Ching-Cheng Chuang; Shyh-Yuan Lee; Yi-Ching Ho; Yao-Sheng Hsieh; Chia-Wei Sun

    2013-01-01

    This review paper describes the applications of dental optical coherence tomography (OCT) in oral tissue images, caries, periodontal disease and oral cancer. The background of OCT, including basic theory, system setup, light sources, spatial resolution and system limitations, is provided. The comparisons between OCT and other clinical oral diagnostic methods are also discussed.

  2. Dental Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Kun-Feng Lin

    2013-07-01

    Full Text Available This review paper describes the applications of dental optical coherence tomography (OCT in oral tissue images, caries, periodontal disease and oral cancer. The background of OCT, including basic theory, system setup, light sources, spatial resolution and system limitations, is provided. The comparisons between OCT and other clinical oral diagnostic methods are also discussed.

  3. Optical Tomography in Combustion

    DEFF Research Database (Denmark)

    Evseev, Vadim

    infrared spectral measurements at several line-of-sights with a view to applications for tomographic measurements on full-scale industrial combustion systems. The system was successfully applied on industrial scale for simultaneous fast exhaust gas temperature measurements in the three optical ports of the......D project, it was also important to investigate the spectral properties of major combustion species such as carbon dioxide and carbon monoxide in the infrared range at high temperatures to provide the theoretical background for the development of the optical tomography methods. The new software was....... JQSRT 113 (2012) 2222, 10.1016/j.jqsrt.2012.07.015] included in the PhD thesis as an attachment. The knowledge and experience gained in the PhD project is the first important step towards introducing the advanced optical tomography methods of combustion diagnostics developed in the project to future...

  4. Optical Coherence Tomography

    DEFF Research Database (Denmark)

    Andersen, Peter E.

    , functional properties such as birefringence or blood flow may be detected and used for improved diagnosis. In ophthalmology, OCT is accepted as a clinical standard for diagnosing and monitoring the treatment of a wide range of retinal diseases. With increased image acquisition speed, real-time or video......-rate imaging is feasible, which has enabled optical microangiography, i.e., visualization of retinal and chorodial blood flow. Such label-free optical microangiography might be feasible as an adjunct modality to fluorescence-based angiography. In this review, the fundamental principles of OCT imaging and its......Optical coherence tomography (OCT) is a noninvasive imaging technique that provides real-time two- and three-dimensional images of scattering samples with micrometer resolution. Mapping the local reflectivity, OCT visualizes the morphology of the sample, in real time or at video rate. In addition...

  5. Optical Tomography in Combustion

    DEFF Research Database (Denmark)

    Evseev, Vadim

    2013-01-01

    The new methodology of optical infrared tomography of flames and hot gas flows was developed in the PhD project with a view to future industrial applications. In particular, the methodology for the tomographic reconstruction of an axisymmetric lab flame temperature profile was developed and tested in the lab using Fourier transform infrared spectroscopy techniques, including a new tomographic measurement scheme, sweeping scanning, having great potential for industrial applications with limited optical access. The results were compared to the reference point measurements on the same flame and the deviations are discussed. The methods are shown to have promising potential for future industrial applications. The new multichannel infrared spectrometer system as a first prototype of the infrared spectroscopic tomography system was developed in the PhD project for simultaneous fast transient infrared spectral measurements at several line-of-sights with a view to applications for tomographic measurements on full-scale industrial combustion systems. The system was successfully applied on industrial scale for simultaneous fast exhaust gas temperature measurements in the three optical ports of the exhaust duct of the large Diesel engine. The results were compared to the measurements performed by another system employing spectral properties of nitric oxides in the ultraviolet range. A good agreement was observed between the results obtained using the two different systems. In the context of the PhD project, it was also important to investigate the spectral properties of major combustion species such as carbon dioxide and carbon monoxide in the infrared range at high temperatures to provide the theoretical background for the development of the optical tomography methods. The new software was developed for the line-by-line calculations of the transmission spectra of a carbon dioxide/carbon monoxide mixture which is able to use within reasonable time the most recent but huge CDSD-4000 database containing updated high-temperature spectroscopic line-by-line data. The software was used for the line-by-line calculations of the transmission spectra of the carbon dioxide/carbon monoxide mixture at high temperatures and the results were compared to the measurements in the high-temperature flow gas cell carried out before the PhD project. The results and discussion are presented in a journal article [Evseev et al. JQSRT 113 (2012) 2222, 10.1016/j.jqsrt.2012.07.015] included in the PhD thesis as an attachment. The knowledge and experience gained in the PhD project is the first important step towards introducing the advanced optical tomography methods of combustion diagnostics developed in the project to future industrial applications.

  6. Optical Coherence Tomography

    DEFF Research Database (Denmark)

    Mogensen, Mette; Themstrup, Lotte; Banzhaf, Christina; Marschall, Sebastian; Andersen, Peter E.; Jemec, Gregor B. E. J.

    optical analogue to ultrasound. The inherent safety of the technology allows for in vivo use of OCT in patients. The main strength of OCT is the depth resolution. In dermatology, most OCT research has turned on non-melanoma skin cancer (NMSC) and non-invasive monitoring of morphological changes in a......Optical coherence tomography (OCT) has developed rapidly since its first realisation in medicine and is currently an emerging technology in the diagnosis of skin disease. OCT is an interferometric technique that detects reflected and backscattered light from tissue and is often described as the...... number of skin diseases based on pattern recognition, and studies have found good agreement between OCT images and histopathological architecture. OCT has shown high accuracy in distinguishing lesions from normal skin, which is of great importance in identifying tumour borders or residual neoplastic...

  7. Amplified Dispersive Optical Tomography

    CERN Document Server

    Goda, Keisuke; Jalali, Bahram

    2008-01-01

    Optical coherence tomography (OCT) has proven to be a powerful technique for studying tissue morphology in ophthalmology, cardiology, and endomicroscopy. Its performance is limited by the fundamental trade-off between the imaging sensitivity and acquisition speed -- a predicament common in virtually all imaging systems. In this paper, we circumvent this limit by using distributed Raman post-amplification of the reflection from the sample. We combine the amplification with simultaneously performed dispersive Fourier transformation, a process that maps the optical spectrum into an easily measured time-domain waveform. The Raman amplification enables measurement of weak signals which are otherwise buried in noise. It extends the depth range without sacrificing the acquisition speed or causing damage to the sample. As proof of concept, single-shot imaging with 15 dB improvement in sensitivity at an axial scan rate of 36.6 MHz is demonstrated.

  8. Optical coherency matrix tomography

    Science.gov (United States)

    Kagalwala, Kumel H.; Kondakci, H. Esat; Abouraddy, Ayman F.; Saleh, Bahaa E. A.

    2015-10-01

    The coherence of an optical beam having multiple degrees of freedom (DoFs) is described by a coherency matrix G spanning these DoFs. This optical coherency matrix has not been measured in its entirety to date—even in the simplest case of two binary DoFs where G is a 4?×?4 matrix. We establish a methodical yet versatile approach—optical coherency matrix tomography—for reconstructing G that exploits the analogy between this problem in classical optics and that of tomographically reconstructing the density matrix associated with multipartite quantum states in quantum information science. Here G is reconstructed from a minimal set of linearly independent measurements, each a cascade of projective measurements for each DoF. We report the first experimental measurements of the 4?×?4 coherency matrix G associated with an electromagnetic beam in which polarization and a spatial DoF are relevant, ranging from the traditional two-point Young’s double slit to spatial parity and orbital angular momentum modes.

  9. Optical Coherence Tomography

    Science.gov (United States)

    Huang, David

    Optical coherence tomography (OCT) is a new method for noninvasive cross-sectional imaging in biological systems. In OCT, the longitudinal locations of tissue structures are determined by measuring the time-of-flight delays of light backscattered from these structures. The optical delays are measured by low coherence interferometry. Information on lateral position is provided by transverse scanning of the probe beam. The two dimensional map of optical scattering from internal tissue microstructures is then represented in a false-color or grayscale image. OCT is the optical analog of ultrasonic pulse-echo imaging, but with greatly improved spatial resolutions (a few microns). This thesis describes the development of this new high resolution tomographic imaging technology and the demonstration of its use in a variety of tissues under both in vitro and in vivo conditions. In vitro OCT ranging and imaging studies were performed using human ocular and arterial tissues, two clinically relevant examples of transparent and turbid media, respectively. In the anterior eye, precise measurements of cornea and anterior chamber dimensions were made. In the arterial specimens, the differentiation between fatty -calcified and fibromuscular tissues was demonstrated. In vivo OCT imaging in the retina and optic nerve head in human subjects was also performed. The delineation of retinal layers, which has not been possible with other noninvasive imaging techniques, is demonstrated in these OCT images. OCT has high spatial resolution but limited penetration into turbid tissue. It has potential for diagnostic applications where high resolution is needed and optical access is available, such as in the eye, skin, surgically exposed tissues, and surfaces that can be reached by various catheters and endoscopic probes. In particular, the measurement of fine retinal structures promises improvements in the diagnosis and management of glaucoma, macular edema and other vitreo-retinal diseases. (Copies available exclusively from MIT Libraries, Rm. 14-0551, Cambridge, MA 02139-4307. Ph. 617-253-5668; Fax 617-253 -1690.).

  10. Optical Coherence Tomography

    DEFF Research Database (Denmark)

    Andersen, Peter E.

    2015-01-01

    Optical coherence tomography (OCT) is a noninvasive imaging technique that provides real-time two- and three-dimensional images of scattering samples with micrometer resolution. Mapping the local reflectivity, OCT visualizes the morphology of the sample, in real time or at video rate. In addition, functional properties such as birefringence or blood flow may be detected and used for improved diagnosis. In ophthalmology, OCT is accepted as a clinical standard for diagnosing and monitoring the treatment of a wide range of retinal diseases. With increased image acquisition speed, real-time or video-rate imaging is feasible, which has enabled optical microangiography, i.e., visualization of retinal and chorodial blood flow. Such label-free optical microangiography might be feasible as an adjunct modality to fluorescence-based angiography. In this review, the fundamental principles of OCT imaging and its main functional extensions are introduced. The part is followed by a discussion of ophthalmic OCT. Finally potential emerging modalities are discussed briefly.

  11. [Optical coherence tomography].

    Science.gov (United States)

    von Braunmühl, T

    2015-07-01

    Optical coherence tomography (OCT) was introduced in the 1990s in dermatology and is nowadays established as a noninvasive high-resolution technique for the in vivo evaluation of the skin. To date several studies have been successfully demonstrated the application of OCT for various dermatological questions. The main indication for OCT in the daily practice is the noninvasive diagnosis of nonmelanoma skin cancer such as actinic keratosis and basal cell carcinoma. OCT has also been shown to be a valuable tool in treatment monitoring and evaluation of therapeutic success of noninvasive treatment strategies like topical immune modulators or photodynamic treatment. Other potential applications for OCT include inflammatory diseases, microbial or parasitic infestations of the skin, e.g. scabies mites or onychomycosis. In recent years high-definition OCT devices have been developed that can potentially be used for the evaluation of melanocytic lesions and, due to the higher resolution, for the visualization of intrafollicular demodex mites. Furthermore different commercially available devices offer-in addition to the cross-sectional images-a fast-generated horizontal (en face) imaging mode. With respect to resolution and penetration depth the OCT technique is taking a middle position in comparison to other noninvasive imaging devices in dermatology such as sonography and reflectance confocal microscopy. PMID:25809459

  12. Second harmonic optical coherence tomography

    CERN Document Server

    Jiang, Y; Wang, Y; Chen, Z; Jiang, Yi; Tomov, Ivan; Wang, Yimin; Chen, Zhongping

    2004-01-01

    Second harmonic optical coherence tomography, which uses coherence gating of second-order nonlinear optical response of biological tissues for imaging, is described and demonstrated. Femtosecond laser pulses were used to excite second harmonic waves from collagen harvested from rat tail tendon and a reference nonlinear crystal. Second harmonic interference fringe signals were detected and used for image construction. Because of the strong dependence of second harmonic generation on molecular and tissue structures, this technique offers contrast and resolution enhancement to conventional optical coherence tomography.

  13. Hyperspectral optical diffraction tomography

    CERN Document Server

    Jung, JaeHwang; Yoon, Jonghee; Park, YongKeun

    2015-01-01

    Here, we present a novel microscopic technique for measuring wavelength-dependent three-dimensional (3-D) distributions of the refractive indices (RIs) of microscopic samples in the visible wavelengths. Employing 3-D quantitative phase microscopy techniques with a wavelength-swept source, 3-D RI tomograms were obtained in the range of 450 - 700 nm with a spectral resolution of a few nanometers. The capability of the technique was demonstrated by measuring the hyperspectral 3-D RI tomograms of polystyrene beads, human red blood cells, and hepatocytes. The results demonstrate the potential for label-free molecular specific 3-D tomography of biological samples.

  14. Optical coherence tomography technology and applications

    CERN Document Server

    2008-01-01

    This book introduces optical coherence tomography, a high resolution imaging technique that enables non-invasive in vivo cross-sectional imaging of biological tissue. Covers optical and technological consderations as well biomedical and clinical perspectives.

  15. Retinal Optical Coherence Tomography Imaging

    Science.gov (United States)

    Drexler, Wolfgang; Fujimoto, James G.

    The eye is essentially transparent, transmitting light with only minimal optical attenuation and scattering providing easy optical access to the anterior segment as well as the retina. For this reason, ophthalmic and especially retinal imaging has been not only the first but also most successful clinical application for optical coherence tomography (OCT). This chapter focuses on the development of OCT technology for retinal imaging. OCT has significantly improved the potential for early diagnosis, understanding of retinal disease pathogenesis, as well as monitoring disease progression and response to therapy. Development of ultrabroad bandwidth light sources and high-speed detection techniques has enabled significant improvements in ophthalmic OCT imaging performance, demonstrating the potential of three-dimensional, ultrahigh-resolution OCT (UHR OCT) to perform noninvasive optical biopsy of the living human retina, i.e., the in vivo visualization of microstructural, intraretinal morphology in situ approaching the resolution of conventional histopathology. Significant improvements in axial resolution and speed not only enable three-dimensional rendering of retinal volumes but also high-definition, two-dimensional tomograms, topographic thickness maps of all major intraretinal layers, as well as volumetric quantification of pathologic intraretinal changes. These advances in OCT technology have also been successfully applied in several animal models of retinal pathologies. The development of light sources emitting at alternative wavelengths, e.g., around #1,060 nm, not only enabled three-dimensional OCT imaging with enhanced choroidal visualization but also improved OCT performance in cataract patients due to reduced scattering losses in this wavelength region. Adaptive optics using deformable mirror technology, with unique high stroke to correct higher-order ocular aberrations, with specially designed optics to compensate chromatic aberration of the human eye, in combination with three-dimensional UHR OCT, recently enabled in vivo cellular resolution retinal imaging.

  16. High-definition optical coherence tomography

    DEFF Research Database (Denmark)

    Boone, Marc; Norrenberg, Sarah; Jemec, Gregor; Del Marmol, Véronique

    2013-01-01

    High-definition optical coherence tomography (HD-OCT) is a non-invasive technique for morphological investigation of tissue with cellular resolution filling the imaging gap between reflectance confocal microscopy and conventional optical coherence tomography. The aim of this study is first to...

  17. Imaging granulomatous lesions with optical coherence tomography

    DEFF Research Database (Denmark)

    Banzhaf, Christina; Jemec, Gregor B E

    2012-01-01

    To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors.......To investigate and compare the presentation of granulomatous lesions in optical coherence tomography (OCT) images and compare this to previous studies of nonmelanoma skin tumors....

  18. Optical Coherence Tomography for the Radiologist.

    Science.gov (United States)

    Schiffman, Jade S; Patel, Nimesh B; Cruz, Roberto Alejandro; Tang, Rosa A

    2015-08-01

    Optical coherence tomography is an imaging technique using low coherence light sources to produce high-resolution cross-sectional images. This article reviews pertinent anatomy and various pathologies causing optic atrophy (eg, compressive, infiltrating, demyelinating) versus optic nerve swelling (from increased intracranial pressure known as papilledema or other optic nerve intrinsic pathologies). On optical coherence tomography, optic atrophy is often associated with reduced average retinal nerve fiber layer thickness, whereas optic nerve swelling is usually associated with increased average retinal nerve fiber layer thickness. PMID:26208414

  19. Optical Coherence Tomography: Advanced Modeling

    DEFF Research Database (Denmark)

    Andersen, Peter E.; Thrane, Lars

    2013-01-01

    Analytical and numerical models for describing and understanding the light propagation in samples imaged by optical coherence tomography (OCT) systems are presented. An analytical model for calculating the OCT signal based on the extended Huygens-Fresnel principle valid both for the single- and multiple-scattering regimes is derived. An advanced Monte Carlo model for calculating the OCT signal is also derived, and the validity of this model is shown through a mathematical proof based on the extended Huygens-Fresnel principle. From the analytical model, an algorithm for enhancing OCT images is developed, the so-called true-reflection algorithm in which the OCT signal may be corrected for the attenuation caused by scattering. The algorithm is verified experimentally and by using the Monte Carlo model as a numerical tissue phantom. Applications of extraction of optical properties from tissue are discussed. Finally, the Wigner phase-space distribution function is derived in a closed-form solution, which may have applications in OCT.

  20. Conical wavefronts in optics and tomography

    International Nuclear Information System (INIS)

    A wide range of techniques in which the information is transferred by conical (nonspherical and nonplanar) wave fronts is considered. This is the first summary of papers published in the field of mesooptics and optical tomography. After the introduction into the new branch of modern optics - mesooptics -the properties of conical wavefronts are treated in detail. Some possible applications of mesooptics in science and technology are considered. The long history of mesooptics treated in the last chapter of this review lecture goes from the early stage of our Universe, gravitational lens, first publications in the last century and up-to-date innovations in optics, mesooptics and optical tomography. 3 refs

  1. Optical Coherence Tomography in Glaucoma

    Science.gov (United States)

    Berisha, Fatmire; Hoffmann, Esther M.; Pfeiffer, Norbert

    Retinal nerve fiber layer (RNFL) thinning and optic nerve head cupping are key diagnostic features of glaucomatous optic neuropathy. The higher resolution of the recently introduced SD-OCT offers enhanced visualization and improved segmentation of the retinal layers, providing a higher accuracy in identification of subtle changes of the optic disc and RNFL thinning associated with glaucoma.

  2. Optical coherence tomography: Technique and applications

    DEFF Research Database (Denmark)

    Thomsen, Jakob Borup; Sander, Birgit; Mogensen, Mette; Thrane, Lars; Jørgensen, Thomas Martini; Jemec, Gregor B.E.; Andersen, Peter E.

    2009-01-01

    Optical coherence tomography (OCT) is a noninvasive optical imaging modality providing real-time video rate images in two and three dimensions of biological tissues with micrometer resolution. OCT fills the gap between ultrasound and confocal microscopy, since it has a higher resolution than ultrasound and a higher penetration than confocal microcopy. Functional extensions are also possible, i.e., flow, birefringence or spectroscopic measurements with high spatial resolution. In ophthalmology, O...

  3. Reconstructions in ultrasound modulated optical tomography

    KAUST Repository

    Allmaras, Moritz

    2011-01-01

    We introduce a mathematical model for ultrasound modulated optical tomography and present a simple reconstruction scheme for recovering the spatially varying optical absorption coefficient from scanning measurements with narrowly focused ultrasound signals. Computational results for this model show that the reconstruction of sharp features of the absorption coefficient is possible. A formal linearization of the model leads to an equation with a Fredholm operator, which explains the stability observed in our numerical experiments. © de Gruyter 2011.

  4. Fast algorithms for hyperspectral Diffuse Optical Tomography

    OpenAIRE

    Saibaba, Arvind K.; Kilmer, Misha; Miller, Eric; Fantini, Sergio

    2014-01-01

    The image reconstruction of chromophore concentrations using Diffuse Optical Tomography (DOT) data can be described mathematically as an ill-posed inverse problem. Recent work has shown that the use of hyperspectral DOT data, as opposed to data sets comprising of a single or, at most, a dozen wavelengths, has the potential for improving the quality of the reconstructions. The use of hyperspectral diffuse optical data in the formulation and solution of the inverse problem poses a significant c...

  5. Dermascope guided multiple reference optical coherence tomography

    OpenAIRE

    Dsouza, Roshan; Subhash, Hrebesh; Neuhaus, Kai; Hogan, Josh; Wilson, Carol; Leahy, Martin

    2014-01-01

    In this paper, we report the feasibility of integrating a novel low cost optical coherence tomography (OCT) system with a dermascope for point-of-care applications. The proposed OCT system is based on an enhanced time-domain optical coherence tomographic system, called multiple reference OCT (MR-OCT), which uses a single miniature voice coil actuator and a partial mirror for extending the axial scan range. The system can simultaneously register both the superficial dermascope image and the de...

  6. Optical coherence tomography: Technique and applications

    DEFF Research Database (Denmark)

    Thomsen, Jakob Borup; Sander, Birgit; Mogensen, Mette; Thrane, Lars; Jørgensen, Thomas Martini; Jemec, Gregor B.E.; Andersen, Peter E.

    Optical coherence tomography (OCT) is a noninvasive optical imaging modality providing real-time video rate images in two and three dimensions of biological tissues with micrometer resolution. OCT fills the gap between ultrasound and confocal microscopy, since it has a higher resolution than...... retinal diseases. The potential of OCT in many other applications is currently being explored, such as in developmental biology, skin cancer diagnostics, vulnerable plaque detection in cardiology, esophageal diagnostics and a number of other applications within oncology....

  7. Optical coherence tomography in conjunction with bronchoscopy

    Energy Technology Data Exchange (ETDEWEB)

    Rodrigues, Ascedio Jose; Takimura, Celso Kiyochi; Lemos Neto, Pedro Alves; Figueiredo, Viviane Rossi, E-mail: ascedio@gmail.com [Servico de Endoscopia Respiratoria, Hospital das Clinicas, Universidade de Sao Paulo (FM/USP), SP (Brazil)

    2012-07-01

    To evaluate the feasibility of and the potential for using optical coherence tomography in conjunction with conventional bronchoscopy in the evaluation of the airways. Methods: This was a pilot study based on an ex vivo experimental model involving three animals: one adult New Zealand rabbit and two Landrace pigs. An optical coherence tomography imaging catheter was inserted through the working channel of a flexible bronchoscope in order to reach the distal trachea of the animals. Images of the walls of the trachea were systematically taken along its entire length, from the distal to the proximal portion. Results: The imaging catheter was easily adapted to the working channel of the bronchoscope. High-resolution images of cross sections of the trachea were taken in real time, precisely delineating microstructures, such as the epithelium, submucosa, and cartilage, as well as the adventitia of the anterior and lateral tracheal walls. The corresponding layers of the epithelium, mucosa, and cartilage were clearly differentiated. The mucosa, submucosa, and trachealis muscle were clearly identified in the posterior wall. Conclusions: It is feasible to use an optical coherence tomography imaging catheter in combination with a flexible bronchoscope. Optical coherence tomography produces high resolution images that reveal the microanatomy of the trachea, including structures that are typically seen only on images produced by conventional histology. (author)

  8. Whole field reflectance optical tomography

    Science.gov (United States)

    Carbone, Nicolás A.; García, Héctor A.; di Rocco, Héctor O.; Iriarte, Daniela I.; Pomarico, Juan A.; Ranea Sandoval, Héctor F.

    2011-08-01

    Optical imaging through highly scattering media such as biological tissues is a topic of intense research, especially for biomedical applications. Diverse optical systems are currently under study and development for displaying the functional imaging of the brain and for the detection of breast tumors. From the theoretical point of view, a suitable description of light propagation in tissues involves the Radiative Transfer Equation, which considers the energetic aspects of light propagation. However, this equation cannot be solved analytically in a closed form and the Diffusion Approximation is normally used. Experimentally it is possible to use Transmission or Reflection geometries and Time Resolved, Frequency Modulated or CW sources. Each configuration has specific advantages and drawbacks, depending on the desired application. In the present contribution, we investigate the reflected light images registered by a CCD camera when scattering and absorbing inhomogeneities are located at different depths inside turbid media. This configuration is of particular interest for the detection and optical characterization of changes in blood flow in organs, as well as for the detection and characterization of inclusions in those cases for which the transmission slab geometry is not well suited. Images are properly normalized to the background intensity and allow analyzing relative large areas (typically 5 × 5 cm2) of the tissue. We tested the proposal using Numerical Monte Carlo simulations implemented in a Graphic Processing Unit (Video accelerating Card). Calculations are thus several orders of magnitude faster than those run in CPU. Experimental results in phantoms are also given.

  9. Optical tomography of the neonatal brain

    Energy Technology Data Exchange (ETDEWEB)

    Hebden, Jeremy C. [University College London, Department of Medical Physics and Bioengineering, London (United Kingdom); Austin, Topun [University College London, Department of Paediatrics and Child Health, London (United Kingdom)

    2007-11-15

    A new method of assessing neurological function and pathology in the newborn infant is being developed based on the transmission of near-infrared light across the brain. Absorption by blood over a range of wavelengths reveals a strong dependency on oxygenation status, and measurements of transmitted light enable the spatial variation in the concentrations of the oxygenated and de-oxygenated forms of hemoglobin to be derived. Optical tomography has so far provided static three-dimensional maps of blood volume and oxygenation as well as dynamic images revealing the brain's response to sensory stimulation and global hemodynamic changes. The imaging modality is being developed as a safe and non-invasive tool that can be utilized at the cotside in intensive care. Optical tomography of the healthy infant brain is also providing a means of studying neurophysiological processes during early development and the potential consequences of prematurity. (orig.)

  10. Molecular Imaging in Optical Coherence Tomography

    OpenAIRE

    Mattison, Scott P.; Kim, Wihan; Park, Jesung; Applegate, Brian E.

    2014-01-01

    Optical coherence tomography (OCT) is a medical imaging technique that provides tomographic images at micron scales in three dimensions and high speeds. The addition of molecular contrast to the available morphological image holds great promise for extending OCT’s impact in clinical practice and beyond. Fundamental limitations prevent OCT from directly taking advantage of powerful molecular processes such as fluorescence emission and incoherent Raman scattering. A wide range of approaches is ...

  11. Near-Infrared Diffuse Optical Tomography

    OpenAIRE

    Hielscher, A. H.; Bluestone, A. Y.; G. S. Abdoulaev; A. D. Klose; J. Lasker; Stewart, M; U. Netz; J. Beuthan

    2002-01-01

    Diffuse optical tomography (DOT) is emerging as a viable new biomedical imaging modality. Using near-infrared (NIR) light, this technique probes absorption as well as scattering properties of biological tissues. First commercial instruments are now available that allow users to obtain cross-sectional and volumetric views of various body parts. Currently, the main applications are brain, breast, limb, joint, and fluorescence/bioluminescence imaging. Although the spatial resolution is limited w...

  12. Innovative experimental concepts for optical coherence tomography

    OpenAIRE

    Laubscher, Markus

    2004-01-01

    Optical Coherence Tomography (OCT) is a recent biomedical imaging technique based on low-coherence interferometry that is capable of acquiring depth-resolved reflectivity maps of scattering tissues with high sensitivity. The conventionally employed imaging mode is to build up a cross sectional image by scanning the sample surface with a point illumination. In order to increase imaging speed, the concept of parallel detection has been introduced to OCT. Here, a whole sample line or even surfac...

  13. Nanoscale optical tomography with cathodoluminescence spectroscopy

    Science.gov (United States)

    Atre, Ashwin C.; Brenny, Benjamin J. M.; Coenen, Toon; García-Etxarri, Aitzol; Polman, Albert; Dionne, Jennifer A.

    2015-05-01

    Tomography has enabled the characterization of the Earth's interior, visualization of the inner workings of the human brain, and three-dimensional reconstruction of matter at the atomic scale. However, tomographic techniques that rely on optical excitation or detection are generally limited in their resolution by diffraction. Here, we introduce a tomographic technique—cathodoluminescence spectroscopic tomography—to probe optical properties in three dimensions with nanometre-scale spatial and spectral resolution. We first obtain two-dimensional cathodoluminescence maps of a three-dimensional nanostructure at various orientations. We then use the method of filtered back-projection to reconstruct the cathodoluminescence intensity at each wavelength. The resulting tomograms allow us to locate regions of efficient cathodoluminescence in three dimensions across visible and near-infrared wavelengths, with contributions from material luminescence and radiative decay of electromagnetic eigenmodes. The experimental signal can be further correlated with the radiative local density of optical states in particular regions of the reconstruction. We demonstrate how cathodoluminescence tomography can be used to achieve nanoscale three-dimensional visualization of light-matter interactions by reconstructing a three-dimensional metal-dielectric nanoresonator.

  14. Turbidity Measurement Using An Optical Tomography System

    OpenAIRE

    Sallehuddin Bin Ibrahim

    2013-01-01

    Turbidity is used to describe water quality and it can be caused by the presence of suspended particles and organic matter such as algae, clay and silt. The measurement of turbidity level of water is vital to domestic water supplies since it is related to public health and water treatment process. This paper presents an investigation on an optical tomography system to estimate the turbidity level in a sample of water. The optical sensors consist of infrared light-emitting diodes (LED) as tran...

  15. Acoustically penetrable optical reflector for photoacoustic tomography.

    Science.gov (United States)

    Deng, Zijian; Zhao, Honghong; Ren, Qiushi; Li, Changhui

    2013-07-01

    Photoacoustic tomography (PAT) detects ultrasound signals generated by the objects after absorbing illuminating photons. However, the widely used piezoelectric ultrasound transducers are generally not optically transparent, which would cause conflicts between the light illumination and the ultrasonic detection in PAT. We report a different acoustically penetrable optical reflector (APOR) concept to provide a solution to this conflict. We measured the properties of an APOR and experimentally tested its performance in a PAT system. The results demonstrated that the APOR successfully allowed the transducer to detector photoacoustic signals without affecting the light illumination. Moreover, the APOR concept can be readily implemented in various PAT systems. PMID:23839486

  16. Endoscopic Optical Coherence Tomography for Clinical Gastroenterology

    Directory of Open Access Journals (Sweden)

    Tsung-Han Tsai

    2014-05-01

    Full Text Available Optical coherence tomography (OCT is a real-time optical imaging technique that is similar in principle to ultrasonography, but employs light instead of sound waves and allows depth-resolved images with near-microscopic resolution. Endoscopic OCT allows the evaluation of broad-field and subsurface areas and can be used ancillary to standard endoscopy, narrow band imaging, chromoendoscopy, magnification endoscopy, and confocal endomicroscopy. This review article will provide an overview of the clinical utility of endoscopic OCT in the gastrointestinal tract and of recent achievements using state-of-the-art endoscopic 3D-OCT imaging systems.

  17. Optical coherence tomography findings of quinine poisoning

    Directory of Open Access Journals (Sweden)

    John Christoforidis

    2011-01-01

    Full Text Available John Christoforidis, Robert Ricketts, Theodore Loizos, Susie ChangThe Ohio State University College of Medicine, Columbus, OH, USAPurpose: To report a case of acute quinine poisoning, document acute and chronic macular changes with optical coherence tomography imaging and fluorescein angiography (FA, and to review the literature on ocular toxicity of quinine.Methods: A 32-year-old white female presented to our Emergency Department after ingesting over 7.5 g of quinine. She underwent a complete ophthalmologic examination, fluorescein angiography, Stratus time-domain optical coherence tomography (OCT, and electroretinography at 72 hours and 15 months postingestion. Stratus time-domain and Cirrus spectral-domain OCT, fundus autofluorescence, and FA were obtained at 28 months postingestion.Results: Fluorescein angiography at 72 hours postingestion revealed normal filling times and vasculature. OCT showed marked thickening of the inner retina bilaterally. At 15 and 28 months follow-up, fundus photography and fluorescein angiography demonstrated optic nerve pallor, severely attenuated retinal vessels while OCT showed inner retinal atrophy. Fundus autofluorescence did not reveal any retinal pigmentary abnormalities.Conclusions: Quinine toxicity as seen by OCT reveals increased thickness with inner retinal hyperreflectivity acutely with development of significant retinal atrophy in the long-term. Fundus autofluorescence reveals an intact retinal pigment epithelial layer at 28 months. These findings suggest that quinine poisoning may produce a direct toxic effect on the inner retina in the acute phase resulting in long-term retinal atrophy.Keywords: retinal, optical coherence tomography, quinine toxicity 

  18. Diffuse optics for tissue monitoring and tomography

    International Nuclear Information System (INIS)

    This review describes the diffusion model for light transport in tissues and the medical applications of diffuse light. Diffuse optics is particularly useful for measurement of tissue hemodynamics, wherein quantitative assessment of oxy- and deoxy-hemoglobin concentrations and blood flow are desired. The theoretical basis for near-infrared or diffuse optical spectroscopy is developed, and the basic elements of diffuse optical tomography are outlined. We also discuss diffuse correlation spectroscopy, a technique whereby temporal correlation functions of diffusing light are transported through tissue and are used to measure blood flow. Essential instrumentation is described, and representative brain and breast functional imaging and monitoring results illustrate the workings of these new tissue diagnostics.

  19. Optical coherence tomography: the past, present and future

    OpenAIRE

    Goel, Raj K.; Kaouk, Jihad H.

    2007-01-01

    Optical coherence tomography is a new technology that provides an atraumatic “optical biopsy” providing both anatomical and possible histopathologic results. It has only recently been incorporated into the urological field. This paper highlights previous and prospective advances of optical coherence tomography in urology and its potential application in robotic urologic surgery.

  20. ROLE OF OPTICAL COHERENCE TOMOGRAPHY IN CENTRAL SEROUS CHORIORETINOPATHY

    OpenAIRE

    Junaid Salam; Parvez Ahmad; Andleeb; Suraya

    2015-01-01

    PURPOSE: To study the role of optical coherence tomography in central serous chorioretinopathy. MATERIAL AND METHODS: A total of 48 eyes of 48 patients with a clinical diagnosis of central serous chorioretinopathy were eval uated with spectral domain optical coherence tomography. After detailed ocular examination, followed by fundus fluorescein angiography, optical coherence tomography was performed and various anatomic features were noted. RESULTS: Out of 48 ...

  1. Fiber optic based optical coherence tomography (OCT) for dental applications

    Energy Technology Data Exchange (ETDEWEB)

    Everett, M. J., LLNL

    1998-06-02

    We have developed a hand-held fiber optic based optical coherence tomography (OCT) system for scanning of the oral cavity We have produced, using this scanning device, in viva cross-sectional images of hard and soft dental tissues in human volunteers Clinically relevant anatomical structures, including the gingival margin, periodontal sulcus, and dento-enamel junction, were visible in all the images The dento-enamel junction and the alveolar bone were identifiable in approximately two thirds of the images These images represent, to our knowledge, the first in viva OCT images of human dental tissue.

  2. Turbidity Measurement Using An Optical Tomography System

    Directory of Open Access Journals (Sweden)

    Sallehuddin Bin Ibrahim

    2013-10-01

    Full Text Available Turbidity is used to describe water quality and it can be caused by the presence of suspended particles and organic matter such as algae, clay and silt. The measurement of turbidity level of water is vital to domestic water supplies since it is related to public health and water treatment process. This paper presents an investigation on an optical tomography system to estimate the turbidity level in a sample of water. The optical sensors consist of infrared light-emitting diodes (LED as transmitters and photodiodes as the receivers where the projections of the sensors are designed in fan beam mode. The system was tested using a vertical flow pipe. The Independent Component Analysis (ICA method was used to display the concentration profile. Results obtained proved that the technique can provide the concentration profile representing the turbidity level of water.

  3. Optical coherence tomography - principles and applications

    Science.gov (United States)

    Fercher, A. F.; Drexler, W.; Hitzenberger, C. K.; Lasser, T.

    2003-02-01

    There have been three basic approaches to optical tomography since the early 1980s: diffraction tomography, diffuse optical tomography and optical coherence tomography (OCT). Optical techniques are of particular importance in the medical field, because these techniques promise to be safe and cheap and, in addition, offer a therapeutic potential. Advances in OCT technology have made it possible to apply OCT in a wide variety of applications but medical applications are still dominating. Specific advantages of OCT are its high depth and transversal resolution, the fact, that its depth resolution is decoupled from transverse resolution, high probing depth in scattering media, contact-free and non-invasive operation, and the possibility to create various function dependent image contrasting methods. This report presents the principles of OCT and the state of important OCT applications. OCT synthesises cross-sectional images from a series of laterally adjacent depth-scans. At present OCT is used in three different fields of optical imaging, in macroscopic imaging of structures which can be seen by the naked eye or using weak magnifications, in microscopic imaging using magnifications up to the classical limit of microscopic resolution and in endoscopic imaging, using low and medium magnification. First, OCT techniques, like the reflectometry technique and the dual beam technique were based on time-domain low coherence interferometry depth-scans. Later, Fourier-domain techniques have been developed and led to new imaging schemes. Recently developed parallel OCT schemes eliminate the need for lateral scanning and, therefore, dramatically increase the imaging rate. These schemes use CCD cameras and CMOS detector arrays as photodetectors. Video-rate three-dimensional OCT pictures have been obtained. Modifying interference microscopy techniques has led to high-resolution optical coherence microscopy that achieved sub-micrometre resolution. This report is concluded with a short presentation of important OCT applications. Ophthalmology is, due to the transparent ocular structures, still the main field of OCT application. The first commercial instrument too has been introduced for ophthalmic diagnostics (Carl Zeiss Meditec AG). Advances in using near-infrared light, however, opened the path for OCT imaging in strongly scattering tissues. Today, optical in vivo biopsy is one of the most challenging fields of OCT application. High resolution, high penetration depth, and its potential for functional imaging attribute to OCT an optical biopsy quality, which can be used to assess tissue and cell function and morphology in situ. OCT can already clarify the relevant architectural tissue morphology. For many diseases, however, including cancer in its early stages, higher resolution is necessary. New broad-bandwidth light sources, like photonic crystal fibres and superfluorescent fibre sources, and new contrasting techniques, give access to new sample properties and unmatched sensitivity and resolution.

  4. Optical coherence tomography - principles and applications

    International Nuclear Information System (INIS)

    There have been three basic approaches to optical tomography since the early 1980s: diffraction tomography, diffuse optical tomography and optical coherence tomography (OCT). Optical techniques are of particular importance in the medical field, because these techniques promise to be safe and cheap and, in addition, offer a therapeutic potential. Advances in OCT technology have made it possible to apply OCT in a wide variety of applications but medical applications are still dominating. Specific advantages of OCT are its high depth and transversal resolution, the fact, that its depth resolution is decoupled from transverse resolution, high probing depth in scattering media, contact-free and non-invasive operation, and the possibility to create various function dependent image contrasting methods. This report presents the principles of OCT and the state of important OCT applications. OCT synthesises cross-sectional images from a series of laterally adjacent depth-scans. At present OCT is used in three different fields of optical imaging, in macroscopic imaging of structures which can be seen by the naked eye or using weak magnifications, in microscopic imaging using magnifications up to the classical limit of microscopic resolution and in endoscopic imaging, using low and medium magnification. First, OCT techniques, like the reflectometry technique and the dual beam technique were based on time-domain low coherence interferometry depth-scans. Later, Fourier-domain techniques have been developed and led to new imaging schemes. Recently developed parallel OCT schemes eliminate the need for lateral scanning and, therefore, dramatically increase the imaging rate. These schemes use CCD cameras and CMOS detector arrays as photodetectors. Video-rate three-dimensional OCT pictures have been obtained. Modifying interference microscopy techniques has led to high-resolution optical coherence microscopy that achieved sub-micrometre resolution. This report is concluded with a short presentation of important OCT applications. Ophthalmology is, due to the transparent ocular structures, still the main field of OCT application. The first commercial instrument too has been introduced for ophthalmic diagnostics (Carl Zeiss Meditec AG). Advances in using near-infrared light, however, opened the path for OCT imaging in strongly scattering tissues. Today, optical in vivo biopsy is one of the most challenging fields of OCT application. High resolution, high penetration depth, and its potential for functional imaging attribute to OCT an optical biopsy quality, which can be used to assess tissue and cell function and morphology in situ. OCT can already clarify the relevant architectural tissue morphology. For many diseases, however, including cancer in its early stages, higher resolution is necessary. New broad-bandwidth light sources, like photonic crystal fibres and superfluorescent fibre sources, and new contrasting techniques, give access to new sample properties and unmatched sensitivity and resolution

  5. In vivo cellular visualization of the human retina using optical coherence tomography and adaptive optics

    Energy Technology Data Exchange (ETDEWEB)

    Olivier, S S; Jones, S M; Chen, D C; Zawadzki, R J; Choi, S S; Laut, S P; Werner, J S

    2006-01-05

    Optical coherence tomography (OCT) sees the human retina sharply with adaptive optics. In vivo cellular visualization of the human retina at micrometer-scale resolution is possible by enhancing Fourier-domain optical-coherence tomography with adaptive optics, which compensate for the eye's optical aberrations.

  6. Optical coherence tomography velocimetry of colloidal suspensions.

    Science.gov (United States)

    Malm, A V; Harrison, A W; Waigh, T A

    2014-11-01

    Optical coherence tomography velocimetry combined with a rheometer and optical modulation techniques provides increased sensitivity to the low shear rate motion of complex fluid systems. Optical modulation coupled with a new interferometer design yields improved signal to noise ratios and is demonstrated with optically opaque colloidal suspensions. Thus the measurable range of shear velocities with complex fluids can be as low as ?40 ?m s(-1), more than an order of magnitude improvement on the previous lower limit of ?700 ?m s(-1). Furthermore the apparatus demonstrates improved sensitivity to the measurement of velocity. The instrument was used to study two hard sphere colloidal systems, sterically stabilized PVP spheres of 1 ?m radius and sterically stabilized polystyrene spheres of 600 nm radius, which display shear banding behavior due to shear induced concentration gradients. OCT velocimetry also allows the velocity fluctuations of the system to be quantified as a function of the distance across the rheometer gap to help classify underlying unsteady or turbulent phenomena. PMID:25181574

  7. Optical coherence tomography technology and applications

    CERN Document Server

    Fujimoto, James

    2015-01-01

    Optical coherence tomography (OCT) is the optical analog of ultrasound imaging and is a powerful imaging technique that enables non-invasive, in vivo, high resolution, cross-sectional imaging in biological tissue.  Between 30 to 40 Million OCT imaging procedures are performed per year in ophthalmology.  The overall market is estimated at more than 0.5 Billion USD.  A new generation OCT technology was developed, dramatically increasing resolution and speed, achieving in vivo optical biopsy, i.e. the visualization of tissue architectural morphology in situ and in real time.  Functional extensions of OCT technology enable non-invasive, depth resolved functional assessment and imaging of tissue.  The book introduces OCT technology and applications not only from an optical and technological viewpoint, but also from the biomedical and clinical perspective. This second edition is widely extended and covers significantly more topics then the first edition of this book. The chapters are written leading intern...

  8. High-definition optical coherence tomography imaging of melanocytic lesions

    DEFF Research Database (Denmark)

    Boone, Marc A L M; Norrenberg, Sarah; Jemec, Gregor B E; Del Marmol, V

    2014-01-01

    High-definition optical coherence tomography (HD-OCT) is a non-invasive in vivo imaging technique with cellular resolution based on the principle of conventional optical coherence tomography. The objective of this study was to evaluate HD-OCT for its ability to identify architectural patterns and...

  9. An Optical Tomography System Using a Digital Signal Processor

    OpenAIRE

    Mohd Hafiz Fazalul Rahiman; Chiam Kok Thiam; Ruzairi Abdul Rahim

    2008-01-01

    The use of a personal computer together with a Data Acquisition System (DAQ) as the processing tool in optical tomography systems has been the norm ever since the beginning of process tomography. However, advancements in silicon fabrication technology allow nowadays the fabrication of powerful Digital Signal Processors (DSP) at a reasonable cost. This allows this technology to be used in an optical tomography system since data acquisition and processing can be performed within the DSP. Thus, ...

  10. Medical imaging with optical coherence tomography

    Science.gov (United States)

    Fujimoto, James G.

    2010-03-01

    Optical coherence tomography (OCT) is an emerging imaging modality which can generate high resolution, cross-sectional and three dimensional images of microstructure in biological systems. OCT is analogous to ultrasound B mode imaging, except that it uses light instead of sound. Imaging is performed by measuring the echo time delay of optical backscattering in the tissue as a function of transverse position. The penetration depth of OCT imaging is limited by attenuation from optical scattering to ˜ 2 to 3 mm in most tissues, however image resolutions of 1-10 um may be achieved. OCT functions as a type of ``optical biopsy" enabling in situ visualization of tissue microstructure with resolutions approaching that of conventional histopathology. Imaging can be performed in real time without the need to remove and process a specimen as in conventional biopsy. OCT technology utilizes advances in photonics and fiber optics such as femtosecond broadband lasers, high speed wavelength swept lasers and line scan camera technologies. Recent developments using Fourier domain detection achieve dramatic improvements in resolution and imaging speed. Three dimensional, volumetric imaging with extremely high voxel density is now possible, enabling microstructure and pathology to be visualized and rendered in a manner analogous to MR imaging. OCT is now widely accepted as a standard diagnostic in clinical ophthalmology, where it can image retinal pathology with unprecedented resolution improving the sensitivity of diagnosis and monitoring response to treatment. OCT is also being developed for other applications ranging from intravascular imaging in cardiology to endoscopic imaging for cancer detection. This presentation will discuss OCT technology and its applications.

  11. Measuring the optical characteristics of medulloblastoma with optical coherence tomography.

    Science.gov (United States)

    Vuong, Barry; Skowron, Patryk; Kiehl, Tim-Rasmus; Kyan, Matthew; Garzia, Livia; Sun, Cuiru; Taylor, Michael D; Yang, Victor X D

    2015-04-01

    Medulloblastoma is the most common malignant pediatric brain tumor. Standard treatment consists of surgical resection, followed by radiation and high-dose chemotherapy. Despite these efforts, recurrence is common, leading to reduced patient survival. Even with successful treatment, there are often severe long-term neurologic impacts on the developing nervous system. We present two quantitative techniques that use a high-resolution optical imaging modality: optical coherence tomography (OCT) to measure refractive index, and the optical attenuation coefficient. To the best of our knowledge, this study is the first to demonstrate OCT analysis of medulloblastoma. Refractive index and optical attenuation coefficient were able to differentiate between normal brain tissue and medulloblastoma in mouse models. More specifically, optical attenuation coefficient imaging of normal cerebellum displayed layers of grey matter and white matter, which were indistinguishable in the structural OCT image. The morphology of the tumor was distinct in the optical attenuation coefficient imaging. These inherent properties may be useful during neurosurgical intervention to better delineate tumor boundaries and minimize resection of normal tissue. PMID:25909030

  12. Diffuse Optical Tomography for Brain Imaging: Theory

    Science.gov (United States)

    Yuan, Zhen; Jiang, Huabei

    Diffuse optical tomography (DOT) is a noninvasive, nonionizing, and inexpensive imaging technique that uses near-infrared light to probe tissue optical properties. Regional variations in oxy- and deoxy-hemoglobin concentrations as well as blood flow and oxygen consumption can be imaged by monitoring spatiotemporal variations in the absorption spectra. For brain imaging, this provides DOT unique abilities to directly measure the hemodynamic, metabolic, and neuronal responses to cells (neurons), and tissue and organ activations with high temporal resolution and good tissue penetration. DOT can be used as a stand-alone modality or can be integrated with other imaging modalities such as fMRI/MRI, PET/CT, and EEG/MEG in studying neurophysiology and pathology. This book chapter serves as an introduction to the basic theory and principles of DOT for neuroimaging. It covers the major aspects of advances in neural optical imaging including mathematics, physics, chemistry, reconstruction algorithm, instrumentation, image-guided spectroscopy, neurovascular and neurometabolic coupling, and clinical applications.

  13. Advanced modelling of optical coherence tomography systems

    DEFF Research Database (Denmark)

    Andersen, Peter E.; Thrane, L.

    2004-01-01

    Analytical and numerical models for describing and understanding the light propagation in samples imaged by optical coherence tomography (OCT) systems are presented. An analytical model for calculating the OCT signal based on the extended Huygens–Fresnel principle valid both for the single and multiple scattering regimes is reviewed. An advanced Monte Carlo model for calculating the OCT signal is also reviewed, and the validity of this model is shown through a mathematical proof based on the extended Huygens–Fresnel principle. Moreover, for the first time the model is verified experimentally. From the analytical model, an algorithm for enhancing OCT images is developed; the so-called true-reflection algorithm in which the OCT signal may be corrected for the attenuation caused by scattering. For the first time, the algorithm is demonstrated by using the Monte Carlo model as a numerical tissue phantom. Such algorithm holds promise for improving OCT imagery and to extend the possibility for functional imaging.

  14. Phase-conjugate optical coherence tomography

    International Nuclear Information System (INIS)

    Quantum optical coherence tomography (Q-OCT) offers a factor-of-2 improvement in axial resolution and the advantage of even-order dispersion cancellation when it is compared to conventional OCT (C-OCT). These features have been ascribed to the nonclassical nature of the biphoton state employed in the former, as opposed to the classical state used in the latter. Phase-conjugate OCT (PC-OCT) shows that nonclassical light is not necessary to reap Q-OCT's advantages. PC-OCT uses classical-state signal and reference beams, which have a phase-sensitive cross correlation, together with phase conjugation to achieve the axial resolution and even-order dispersion cancellation of Q-OCT with a signal-to-noise ratio that can be comparable to that of C-OCT

  15. Optical coherence tomography of the rat cochlea

    Science.gov (United States)

    Wong, Brian J.; de Boer, Johannes F.; Park, Boris H.; Chen, Zhongping; Nelson, J. Stuart

    2000-10-01

    Optical coherence tomography (OCT) was used to image the internal structure of a rat cochlea (ex vivo). Immediately following sacrifice, the temporal bone of a Sprague-Dawley rat was harvested. Axial OCT cross sectional images (over regions of interest, 1 X 1 mm-2 X 8 mm) were obtained with a spatial resolution of 10 - 15 micrometers . The osseous borders of the lateral membranous labyrinth overlying the cochlea and the scala vestibuli, media, and tympani, which were well demarcated by the modiolus, Reissner's and the basilar membranes, were clearly identified. OCT can be used to image internal structures in the cochlea without violating the osseous labyrinth using simple surgical exposure of the promontory, and may potentially be used to diagnose inner ear pathology in vivo in both animal and human subjects labyrinth.

  16. Functional optical coherence tomography: principles and progress

    Science.gov (United States)

    Kim, Jina; Brown, William; Maher, Jason R.; Levinson, Howard; Wax, Adam

    2015-05-01

    In the past decade, several functional extensions of optical coherence tomography (OCT) have emerged, and this review highlights key advances in instrumentation, theoretical analysis, signal processing and clinical application of these extensions. We review five principal extensions: Doppler OCT (DOCT), polarization-sensitive OCT (PS-OCT), optical coherence elastography (OCE), spectroscopic OCT (SOCT), and molecular imaging OCT. The former three have been further developed with studies in both ex vivo and in vivo human tissues. This review emphasizes the newer techniques of SOCT and molecular imaging OCT, which show excellent potential for clinical application but have yet to be well reviewed in the literature. SOCT elucidates tissue characteristics, such as oxygenation and carcinogenesis, by detecting wavelength-dependent absorption and scattering of light in tissues. While SOCT measures endogenous biochemical distributions, molecular imaging OCT detects exogenous molecular contrast agents. These newer advances in functional OCT broaden the potential clinical application of OCT by providing novel ways to understand tissue activity that cannot be accomplished by other current imaging methodologies.

  17. Optical coherence tomography of the eye

    Science.gov (United States)

    Hee, Michael Richard

    1997-10-01

    Optical Coherence Tomography (OCT) is a new technique for high-resolution, cross-sectional imaging of tissue in which the time-of-flight delay of light reflected from internal tissue structures is resolved with high precision using interferometry. Tomographic images are obtained which are analogous to those provided by ultrasound except that image contrast relies on differences in optical rather than acoustic properties of tissue. The use of light rather than sound enables higher resolution (10 ?m) and non-contact imaging. A clinically viable high-sensitivity, fiber-optic based OCT instrument has been constructed based on engineering principles derived from optical communication theory. Computer algorithms have also been developed for quantitative image analysis and restoration. OCT has been used to image patients with a variety of ocular diseases. In patients with macular pathology, OCT images have been correlated with conventional clinical examination and fluorescein angiography. Optical coherence tomograms are effective in staging macular holes, evaluating the vitreoretinal interface in eyes at risk for a macular hole, and providing a structural assessment of macular hole surgery. In eyes with central serous chorioretinopathy, OCT can evaluate sensory retinal separations undetected at the slit-lamp. Serial OCT images of macular edema are able to track both the progression of macular thickening and the resolution of macular edema following laser photocoagulation. In patients with diabetic retinopathy, measurements of macular thickness correlate with visual acuity and OCT is more sensitive to small changes in retinal thickness than slit-lamp biomicroscopy. OCT may provide a novel method of defining occult choroidal neovascular membranes in patients with age-related macular degeneration. OCT can also profile the thickness of the retinal nerve fiber layer with high resolution which is potentially important for the objective assessment of early glaucoma progression. OCT images have been correlated with visual field performance and optic nerve appearance in a cross- section of patients with various stages of glaucoma. These studies suggest that OCT has the potential to become an important diagnostic tool for the practicing ophthalmologist. (Copies available exclusively from MIT Libraries, Rm. 14-0551, Cambridge, MA 02139-4307. Ph. 617-253-5668; Fax 617-253-1690.)

  18. Motion contrast using optical coherence tomography

    Science.gov (United States)

    Fingler, Jeffrey Paul

    Diagnosis of ophthalmic diseases like age-related macular degeneration is very important for treatment of the disease as well as the development of future treatments. Optical coherence tomography (OCT) is an optical interference technique which can measure the three-dimensional structural information of the reflecting layers within a sample. In retinal imaging, OCT is used as the primary diagnostic tool for structural abnormalities such as retinal holes and detachments. The contrast within the images of this technique is based upon reflectivity changes from different regions of the retina. This thesis demonstrates the developments of methods used to produce additional contrast to the structural OCT images based on the tiny fluctuations of motion experienced by the mobile scatterers within a sample. Motion contrast was observed for motions smaller than 50 nm in images of a variety of samples. Initial contrast method demonstrations used Brownian motion differences to separate regions of a mobile Intralipid solution from a static agarose gel, chosen in concentration to minimize reflectivity contrast. Zebrafish embryos in the range of 3-4 days post fertilization were imaged using several motion contrast methods to determine the capabilities of identifying regions of vascular flow. Vasculature identification was demonstrated in zebrafish for blood vessels of all orientations as small as 10 microns in diameter. Mouse retinal imaging utilized the same motion contrast methods to determine the contrast capabilities for motions associated with vasculature within the retina. Improved contrast imaging techniques demonstrated comparable images to fluorescein angiography, the gold standard of retinal vascular imaging. Future studies can improve the demonstrated contrast analysis techniques and apply them towards human retinal motion contrast imaging for ophthalmic diagnostic purposes.

  19. Three-Dimensional Optical Coherence Tomography (3D OCT) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Applied Science Innovations, Inc. proposes a new tool of 3D optical coherence tomography (OCT) for cellular level imaging at video frame rates and dramatically...

  20. Three-Dimensional Optical Coherence Tomography (3D OCT) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Applied Science Innovations, Inc. proposes to develop a new tool of 3D optical coherence tomography (OCT) for cellular level imaging at video frame rates and...

  1. Quantitative contrast-enhanced optical coherence tomography

    Science.gov (United States)

    Winetraub, Yonatan; SoRelle, Elliott D.; Liba, Orly; de la Zerda, Adam

    2016-01-01

    We have developed a model to accurately quantify the signals produced by exogenous scattering agents used for contrast-enhanced Optical Coherence Tomography (OCT). This model predicts distinct concentration-dependent signal trends that arise from the underlying physics of OCT detection. Accordingly, we show that real scattering particles can be described as simplified ideal scatterers with modified scattering intensity and concentration. The relation between OCT signal and particle concentration is approximately linear at concentrations lower than 0.8 particle per imaging voxel. However, at higher concentrations, interference effects cause signal to increase with a square root dependence on the number of particles within a voxel. Finally, high particle concentrations cause enough light attenuation to saturate the detected signal. Predictions were validated by comparison with measured OCT signals from gold nanorods (GNRs) prepared in water at concentrations ranging over five orders of magnitude (50 fM to 5 nM). In addition, we validated that our model accurately predicts the signal responses of GNRs in highly heterogeneous scattering environments including whole blood and living animals. By enabling particle quantification, this work provides a valuable tool for current and future contrast-enhanced in vivo OCT studies. More generally, the model described herein may inform the interpretation of detected signals in modalities that rely on coherence-based detection or are susceptible to interference effects.

  2. Optical coherence tomography in diagnosing cervical cancer

    Science.gov (United States)

    Kuznetzova, Irina A.; Shakhova, Natalia M.; Kachalina, Tatiana S.; Gladkova, Natalia D.; Myakov, Alexey V.; Iksanov, Rashid R.; Feldchtein, Felix I.

    2000-05-01

    Cervical cancer remains one of the most significant problem in oncogynecology. It tends towards treatment approaches that provide termination of pathological processes along with preservation of the patient's life quality. There is a need in earlier and more accurate diagnosis of pathological states, objective assessment of physiological processes, and adequate monitoring of the course of treatment. In our previous publications we have reported unique capabilities of the Optical Coherence Tomography (OCT) to image in vivo the mucosa structure of the cervix and to monitor various physiological and pathological alterations. In this report, we present results of OCT application to diagnose different stages of cervical cancer and to control its treatment at early stages. We have performed OCT-colposcopy in 11 female patients with cervical cancer to derive OCT criteria of this disease, to provide exact demarcation of a pathological area, and to determine a real size of a tumor. We have found that, in general, borders of a tumor, defined visually and detected with OCT by violation of the basement membrane in exocervix, do not coincide. The mismatch depends on a stage of cancer and can be as much as several millimeters. This information is especially important for evaluation of linear dimension of tumors with 3 - 5 mm invasion and also for differential diagnosis between the T1 and T2 stages with cancer extension onto vagina.

  3. Anatomic Optical Coherence Tomography of Upper Airways

    Science.gov (United States)

    Chin Loy, Anthony; Jing, Joseph; Zhang, Jun; Wang, Yong; Elghobashi, Said; Chen, Zhongping; Wong, Brian J. F.

    The upper airway is a complex and intricate system responsible for respiration, phonation, and deglutition. Obstruction of the upper airways afflicts an estimated 12-18 million Americans. Pharyngeal size and shape are important factors in the pathogenesis of airway obstructions. In addition, nocturnal loss in pharyngeal muscular tone combined with high pharyngeal resistance can lead to collapse of the airway and periodic partial or complete upper airway obstruction. Anatomical optical coherence tomography (OCT) has the potential to provide high-speed three-dimensional tomographic images of the airway lumen without the use of ionizing radiation. In this chapter we describe the methods behind endoscopic OCT imaging and processing to generate full three dimensional anatomical models of the human airway which can be used in conjunction with numerical simulation methods to assess areas of airway obstruction. Combining this structural information with flow dynamic simulations, we can better estimate the site and causes of airway obstruction and better select and design surgery for patients with obstructive sleep apnea.

  4. Experimental Demonstration of Spectral Intensity Optical Coherence Tomography

    OpenAIRE

    Ryczkowski, Piotr; Turunen, Jari; Friberg, Ari T.; Genty, Goëry

    2015-01-01

    We demonstrate experimentally quantum-inspired, spectral-domain intensity optical coherence tomography. We show that the technique allows for both axial resolution improvement and dispersion cancellation compared to conventional optical coherence tomography. The method does not involve scanning and it works with classical light sources and standard photodetectors. The measurements are in excellent agreement with the theoretical predictions. We also propose an approach that e...

  5. High-definition optical coherence tomography imaging of melanocytic lesions

    DEFF Research Database (Denmark)

    Boone, Marc A L M; Norrenberg, Sarah; Jemec, Gregor B E; Del Marmol, V

    2014-01-01

    High-definition optical coherence tomography (HD-OCT) is a non-invasive in vivo imaging technique with cellular resolution based on the principle of conventional optical coherence tomography. The objective of this study was to evaluate HD-OCT for its ability to identify architectural patterns and cytologic features of melanocytic lesions. All lesions were examined by one observer clinically and using dermoscopy. Cross-sectional HD-OCT images were compared with histopathology. En face HD-OCT imag...

  6. Coherent noise remover for optical projection tomography

    Science.gov (United States)

    Shi, Liangliang; Dong, Di; Yang, Yujie; Wang, Jun; Arranz, Alicia; Ripoll, Jorge; Tian, Jie

    2015-03-01

    Optical Projection Tomography (OPT) is a 3-Dimentional (3D) imaging technique for small specimens between 1mm and 10mm in size. Due to its high resolution and whole-body imaging ability, OPT has been widely used for imaging of small specimens such as murine embryos, murine organs, zebra fish, and plant sections. During an OPT imaging experiment, the ring artifacts are very common which severely impact the image quality of OPT. A ring artifact is caused by a bad pixel on the camera, or impurities on surface of lens and index matching vessel. Here we term these noises as coherent noise because they stay in the same image region during an OPT experiment. Currently, there is still no effective method to remove coherent noises. To address this problem, we propose a novel method to suppress the coherent noises before 3D OPT reconstruction. Our method consists of two steps: 1) find bad pixel positions on a blank image without specimen by using threshold segmentation, then fix the bad pixels on the projection image by using average of their neighbor pixels, 2) remove remained coherent noises on the sinogram by using Variational Coherent noise Remover (VSNR) method. After the two steps, lots of method can be used to generate the tomographic slices from the modified sinograms. We apply our method to a mouse heart imaging with our home-made OPT system. The experimental results show that our method has a good suppression on coherent noise and greatly improves the image quality. The innovation of our method is that we remove coherent noise automatically from both projection image and sinogram and they complement each other.

  7. Quantum optical coherence tomography of a biological sample

    CERN Document Server

    Nasr, Magued B; Nguyen, Nam; Rong, Guoxin; Yang, Linglu; Reinhard, Bjorn M; Saleh, Bahaa E A; Teich, Malvin C

    2008-01-01

    Quantum optical coherence tomography (QOCT) makes use of an entangled-photon light source to carry out dispersion-immune axial optical sectioning. We present the first experimental QOCT images of a biological sample: an onion-skin tissue coated with gold nanoparticles. 3D images are presented in the form of 2D sections of different orientations.

  8. Accuracy of optical navigation systems for automatic head surgery: optical tracking versus optical coherence tomography

    Science.gov (United States)

    Díaz Díaz, Jesús; Riva, Mauro H.; Majdani, Omid; Ortmaier, Tobias

    2014-03-01

    The choice of a navigation system highly depends on the medical intervention and its accuracy demands. The most commonly used systems for image guided surgery (IGS) are based on optical and magnetic tracking systems. This paper compares two optical systems in terms of accuracy: state of the art triangulation-based optical tracking (OT) and optical coherence tomography (OCT). We use an experimental setup with a combined OCT and cutting laser, and an external OT. We simulate a robotic assisted surgical intervention, including planning, navigation, and processing, and compare the accuracies reached at a specific target with each navigation system.

  9. OPTICAL COHERENCE TOMOGRAPHY IN JUVENILE NEURONAL CEROID LIPOFUSCINOSIS

    DEFF Research Database (Denmark)

    Hansen, Michael S; Hove, Marianne Nørgaard; Jensen, Hanne; Larsen, Michael

    2016-01-01

    PURPOSE: To report optical coherence tomography findings obtained in two patients with juvenile neuronal ceroid lipofuscinosis. METHODS: Two case reports. RESULTS: Two 7-year-old girls presented with decreased visual acuity, clumsiness, night blindness, and behavioral problems. Optical coherence...... tomography showed an overall reduction in thickness of the central retina, as well as the outer and the inner retinal layers. The degenerative retinal changes were the same, despite different mutations in the CLN3 gene. CONCLUSION: In these rare cases of juvenile neuronal ceroid lipofuscinosis, optical...

  10. A comprehensive method for optical-emission computed tomography

    OpenAIRE

    Thomas, Andrew; Bowsher, James; Roper, Justin; Oliver, Tim; Dewhirst, Mark; Oldham, Mark

    2010-01-01

    Optical-computed tomography (CT) and optical-emission computed tomography (ECT) are recent techniques with potential for high-resolution multi-faceted 3D imaging of the structure and function in unsectioned tissue samples up to 1–4 cc. Quantitative imaging of 3D fluorophore distribution (e.g. GFP) using optical-ECT is challenging due to attenuation present within the sample. Uncorrected reconstructed images appear hotter near the edges than at the center. A similar effect is seen in SPECT/PET...

  11. Functional swept source optical coherence tomography

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) is a non-invasive imaging modality capable of providing information about a sample structure along the three spatial dimensions with micrometer scale resolution. A new chapter opened with the development of functional OCT that provides additional information to the standard structural imaging. Among those extensions is Doppler OCT (D-OCT) that yields knowledge about the motion of the sample and/or its substructure. Its main application in biomedical imaging is the assessment of blood flow. D-OCT is therefore often associated with blood velocity measurement and recently with the visualization of the vascular network. Blood flow and vasculature are important markers of tissue health. Their assessment provides crucial information for diagnostics, treatment planning and monitoring. OCT is in a good position, as a non-invasive technique, to become an alternative to current fluorescence based techniques, allowing thereby also more frequent examination and broader screenings and, as a high resolution modality, to give insight into potential changes at the capillary level. An important challenge of in vivo imaging is patient motion that decreases the quality of acquisitions. One solution to that issue is high-speed imaging. Recently swept source OCT (SSOCT) revealed to be an efficient technology to achieve high-speed. This thesis investigates the use of swept sources for qualitative and quantitative vasculature imaging. It is presented via five journal papers that form its backbone. Prior to that, main concepts of FDOCT, D-OCT and SS systems are presented. The first paper reports a SSOCT system for skin imaging. In standard OCT systems, improving the lateral resolution comes at a cost of reduced depth of focus. This should be avoided in order to be able to assess different vascular beds in depth while keeping the speed advantage of FDOCT. Employing a Bessel beam for illumination of the sample allows circumventing this issue. The image quality of that configuration is compared to that of a standard system. Also, the further advantages of Bessel illumination, such as beam self-regeneration and dark-field imaging are demonstrated. The second paper demonstrates clinically relevant applications in dermatology. The system and the post-processing algorithms are applied to healthy and pathological skin, thereby exhibiting the potential of the system for clinical application. We demonstrate with selected examples that disease, including non-melanoma skin cancer, affects the vasculature network and its perfusion. It confirms the relevancy of providing additional functional information to the standard structure. The third paper applies similar post-processing to imaging of the posterior pole vasculature. This work demonstrates the need for speed in in vivo imaging and paves the way to future clinical procedures. Ultrahigh-speed allows imaging over a large field of view in a few seconds, hence, bypassing the need for volume stitching. Dedicated post-processing permits depth resolved visualization from large vessels to capillaries non-invasively. The fourth paper switches the topic to quantitative blood flow assessment by the introduction of a system allowing for stable blood flow velocity measurements. Employing two beams measuring the same location along different directions provides accurate velocity measurements. Still, this fixed optical illumination becomes unstable if the vessel is perpendicular to the illumination plane subtended by both directions. The publication suggests utilizing a Dove prism to rotate the illumination plane and thereby improving the flexibility of that configuration. Finally, the last paper proposes a method to optically resolve a photoacoustic signal with a SSOCT system. A combination of photoacoustics with OCT would provide complementary spectroscopic or metabolic information about the sample and would ultimately improve knowledge about tissue health.(author)

  12. Towards multimodal nonlinear optical tomography – experimental methodology

    International Nuclear Information System (INIS)

    All-optical microspectroscopic and tomographic tools reveal great potential for clinical dermatologic diagnostics, i.e., investigation of human skin and skin diseases. While optical-coherence tomography has been complemented by two-photon fluorescence tomography and second-harmonic generation tomography, a joint study of various nonlinear optical microspectroscopies, i.e., application of the recently developed multimodal imaging approach, to sizable human-tissue samples has not been evaluated up to now. Here, we present such multimodal approach combining different nonlinear optical contrast mechanisms for imaging, namely two-photon excited fluorescence (TPF), second-harmonic generation (SHG), and coherent anti-Stokes Raman scattering (CARS) into a joint microscopic experiment. We show the potential of imaging large skin areas and discuss the information obtained in a case study comparing normal skin and keloid tissue

  13. A 5° medial wedge reduces frontal but not saggital plane motion during jump landing in highly trained women athletes

    Directory of Open Access Journals (Sweden)

    Michael F Joseph

    2010-03-01

    Full Text Available Michael F Joseph1, Craig R Denegar1, Elaine Horn1, Bradley MacDougall1, Michael Rahl1, Jessica Sheehan1, Thomas Trojian2, Jeffery M Anderson1, James E Clark1, William J Kraemer11Department of Kinesiology, 2Department of Sports Medicine, University of Connecticut, Storrs, CT, USAAbstract: Lower extremity mechanics during landing have been linked to traumatic and nontraumatic knee injuries, particularly in women’s athletics. The effects of efforts to mitigate these risks have not been fully elucidated. We previously reported that a 5° medial wedge reduced ankle eversion and knee valgus. In the present report we further investigated the effect of a 5° medial wedge inserted in the shoes of female athletes on frontal plane hip motion, as well as ankle, knee, hip, and trunk saggital plane motion during a jump landing task. Kinematic data were obtained from 10 intercollegiate female athletes during jump landings from a 31 cm platform with and without a 5° medial wedge. Hip adduction was reduced 1.98° (95% CI 0.97–2.99° by the medial wedge but saggital plane motions were unaffected. A 5° medial wedge reduces frontal plane motion and takes the knee away from a position associated with anterior cruciate ligament injury and patellofemoral pain syndrome. Although frontal plane motion was not captured it is unlikely to have increased in a bilateral landing task. Thus, it is likely that greater muscle forces were generated in these highly trained athletes to dissipate ground reaction forces when a medial wedge was in place. Additional investigation in younger and lesser trained athletes is warranted to assess the impact of orthotic devices on knee joint mechanics.Keywords: jump landing, foot orthotic, lower extremity kinematics, knee biomechanics, knee injury

  14. Development of Fourier domain optical coherence tomography

    Science.gov (United States)

    Wang, Rui

    Fourier domain optical coherence tomography (FD-OCT) is a high-speed, high-resolution, and noninvasive imaging technique that can obtain cross-sectional images of light scattering medium, such as biomedical tissues. In this thesis, I report three novel methods in FD-OCT technique including common-path endoscopic FD-OCT, streak-mode FD-OCT, and Doppler streak-mode FD-OCT. Finally, I apply the streak mode FD-OCT to ultrahigh-speed, noninvasive, live imaging of embryonic chick hearts. An extension of conventional FD-OCT technique is endoscopic FD-OCT, which can access internal organs by utilizing a miniaturized catheter design. However, its image signal suffers from the bending of the endoscopic catheter. To address this problem, a common-path endoscopic FD-OCT system was developed to avoid the polarization mismatch. Consequently, the OCT images were immune to the catheter bending. In addition, a Microelectromechanical system (MEMS) motor was integrated into the miniaturized probe to achieve circumferential scanning within lumen samples. In conventional FD-OCT, the imaging speed is limited by the slow line-scan rate of the camera. We developed the streak-mode FD-OCT technique, in which an area-scan camera is used instead of a line-scan camera to record the FD-OCT spectrum. Using this technique, high temporal resolution of 1000--2000 cross-sectional images of the sample were obtained in one second. Doppler FD-OCT is a functional extension of FD-OCT technique, which can measure the flow velocity within biomedical tissues. However, conventional techniques are not available to measure high speed flow due to slow imaging speed, phase wrapping, and fringe wash out issues. Based on the streak mode FD-OCT, a novel Doppler technique was developed that addressed these problems. It has been well established that cardiac dynamics play an important role in the early development of an embryonic heart. However, the mechanism by which cardiac dynamics affect the development of a peristaltic tube into a four-chambered heart is still unclear. This is mainly due to lack of investigative tools, such as an imaging technique with sufficiently high spatial and temporal resolution. Using streak-mode FD-OCT, 4D (3D + time) images of beating hearts have been reconstructed. This marks the first time that the embryonic animal heart has been 4D imaged using a megahertz OCT.

  15. ROLE OF OPTICAL COHERENCE TOMOGRAPHY IN CENTRAL SEROUS CHORIORETINOPATHY

    Directory of Open Access Journals (Sweden)

    Junaid Salam

    2015-06-01

    Full Text Available PURPOSE: To study the role of optical coherence tomography in central serous chorioretinopathy. MATERIAL AND METHODS: A total of 48 eyes of 48 patients with a clinical diagnosis of central serous chorioretinopathy were eval uated with spectral domain optical coherence tomography. After detailed ocular examination, followed by fundus fluorescein angiography, optical coherence tomography was performed and various anatomic features were noted. RESULTS: Out of 48 eyes, 41 had acu te and 7 had chronic central serous chorioretinopathy. The mean age of the patients was 35 (SD 7 . 1 years with male (83 . 4% preponderance in our study. All patients had unilateral involvement with blurring of vision (43 . 75% and metamorphopsia (31 . 25% bein g the main presenting complaints. Fundus fluorescein angiography revealed a total of 56 leakage points with ink - blot pattern being 6 times more frequent than smoke - stack pattern in our study. On optical coherence tomography neurosensory detachment was see n in 44 eyes. Total macular thickness ranged from 220μm - 1120μm (mean±SD : 447±219 and vault height ranged from 100μm - 900μm (mean±SD : 350±187. Retinal pigment epithelial abnormality was seen in 87 . 5 % eyes, retinal pigment epithelial detachment in 18.75 % e yes and retinal pigment epithelial bulge in 27 . 09% patients. CONCLUSION: Optical coherence tomography can be used as a complimentary diagnostic tool in central serous chorioretinopathy.

  16. Polarization-Sensitive Quantum Optical Coherence Tomography: Experiment

    OpenAIRE

    Booth, Mark C.; Saleh, Bahaa E. A.; Teich, Malvin Carl

    2010-01-01

    Polarization-sensitive quantum optical coherence tomography (PS-QOCT) makes use of a Type-II twin-photon light source for carrying out optical sectioning with polarization sensitivity. A BBO nonlinear optical crystal pumped by a Ti:sapphire psec-pulsed laser is used to confirm the theoretical underpinnings of this imaging paradigm. PS-QOCT offers even-order dispersion cancellation with simultaneous access to the group-velocity dispersion characteristics of the interstitial m...

  17. Optimisation of post mortem cardiac computed tomography compared to optical coherence tomography and histopathology - Technical note

    DEFF Research Database (Denmark)

    Precht, Helle; Leth, Peter Mygind; Thygesen, Jesper; Hardt-Madsen, Michael; Nielsen, Bjarne; Falk, Erling; Egstrup, Kenneth; Gerke, Oke; Broersen, Alexander; Kitslaar, Pieter H.; Dijkstra, Jouke; Lambrechtsen, Jess

    2014-01-01

    Introduction: Coronary atherosclerosis is a leading cause of mortality. New technological developments in computed tomography (CT), including dual energy, iterative reconstructions and high definition scanning, could significantly improve the non-invasive identification of atherosclerosis plaques. Here, a new method for optimising cardiac coronary CT with optical coherence tomography (OCT) and histopathology is presented. Materials and methods: Twenty human hearts obtained from autopsies were us...

  18. Imaging of the Rotator Cuff With Optical Coherence Tomography.

    Science.gov (United States)

    Hartshorn, Timothy; Ren, Jian; Vangsness, C Thomas

    2015-09-01

    This study evaluated the utility of optical coherence tomography (OCT) in imaging porcine and human rotator cuff (RTC) tissue, analyzed its effectiveness in identifying clinical pathology, and correlated these findings with histologic examination. Twelve human cadaveric and 6 porcine shoulders were evaluated. Six-millimeter-wide bone sections were harvested from the proximal humerus of each specimen, with each containing the entire enthesis of the respective RTC tendon, as well as 2 cm of tendon medial to the enthesis. Only the supraspinatus tendon was evaluated in the human specimens, whereas the enthesis of multiple RTC tendons were evaluated in the porcine model. All specimens were imaged using OCT and correlated with histologic evaluation. Optical coherence tomography evaluation of macroscopically healthy tissue consistently showed an easily identifiable banding pattern (birefringence) in contrast to a disorganized, homogeneous appearance in grossly diseased tissue. Optical coherence tomography was more effective for qualitative evaluation of RTC tissue, identification of bursal-sided RTC tears, and localization of calcific deposits, whereas intrasubstance tendon delaminations and partial articular-sided tendon avulsion lesions were relatively more difficult to identify. Optical coherence tomography correlated well with histologic evaluation in all specimens. Optical coherence tomography provides high-resolution, subsurface imaging of rotator cuff tissue in real-time to a depth of up to 4 mm with excellent correlation to histology in a cadaveric model. Optical coherence tomography could be an effective adjunctive tool for the identification and localization of rotator cuff pathology. The use of OCT in arthroscopic shoulder surgery potentially provides a minimally invasive modality for qualitative assessment of rotator cuff pathology. This may allow for a decrease in soft tissue dissection, improved qualitative assessment of cuff tissue, and improved patient outcomes. PMID:26375544

  19. Optical Doppler tomography based on a field programmable gate array

    DEFF Research Database (Denmark)

    Larsen, Henning Engelbrecht; Nilsson, Ronnie Thorup; Thrane, Lars; Pedersen, Finn; Jørgensen, Thomas Martini; Andersen, Peter E.

    2008-01-01

    We report the design of and results obtained by using a field programmable gate array (FPGA) to digitally process optical Doppler tomography signals. The processor fits into the analog signal path in an existing optical coherence tomography setup. We demonstrate both Doppler frequency and envelope...... extraction using the Hilbert transform, all in a single FPGA. An FPGA implementation has certain advantages over general purpose digital signal processor (DSP) due to the fact that the processing elements operate in parallel as opposed to the DSP. which is primarily a sequential processor....

  20. Analysis of multiple scattering effects in optical Doppler tomography

    DEFF Research Database (Denmark)

    Yura, H.T.; Thrane, L.; Andersen, Peter E.

    Optical Doppler tomography (ODT) combines Doppler velocimetry and optical coherence tomography (OCT) to obtain high-resolution cross-sectional imaging of particle flow velocity in scattering media such as the human retina and skin. Here, we present the results of a theoretical analysis of ODT where......-resolved retinal flow profiles where the influence of multiple scattering was observed [Yazdanfar et al., Opt. Lett. 25, 1448 (2000)]. To the best of our knowledge, no analytical model exists that are able to explain these observations....

  1. Topological sensitivity analysis in fluorescence optical tomography

    International Nuclear Information System (INIS)

    Fluorescence tomography is a non-invasive imaging modality that reconstructs fluorophore distributions inside a small animal from boundary measurements of the fluorescence light. The associated inverse problem is stabilized by a priori properties or information. In this paper, cases are considered where the fluorescent inclusions are well separated from the background and have a spatially constant concentration. Under these a priori assumptions, the identification process may be formulated as a shape optimization problem, where the interface between the fluorescent inclusion and the background constitutes the unknown shape. In this paper, we focus on the computation of the so-called topological derivative for fluorescence tomography which could be used as a stand-alone tool for the reconstruction of the fluorophore distributions or as the initialization in a level-set-based method for determining the shape of the inclusions. (paper)

  2. Design and fabrication of optical polymer waveguide devices for optical interconnects and integrated optical coherence tomography

    Science.gov (United States)

    Jiang, Guomin

    Optical interconnects is a promising technique to boost the speed of electronic systems through replacing high speed electrical data buses using optical ones. Optical coherence tomography is an attractive imaging technique that has been widely used in medical imaging applications with capability of high resolution subsurface cross sectional imaging in living tissues. Both the optical interconnects and the optical coherence tomography imaging may benefit from the use of integrated optics technology in particular polymer waveguides that can be designed and fabricated to improve the device capability, system compactness, and performance reliability. In this dissertation, we first present our innovative design and realization on the polymer waveguides with 45° integrated mirrors for optical interconnects using the vacuum assisted microfluidic (VAM) soft lithography. VAM is a new microfluidic based replication technique which can be utilized to improve the performance of imprinted devices by eliminating the residue planar layer and accomplish complex devices incorporating different materials in the same layer. A prism-assisted inclined UV lithography technique is introduced to increase the slanted angles of the side walls of the microstructures and to fabricate multidirectional slanted microstructures. It is also used to fabricate 45° integrated mirrors in polymer waveguides to support surface normal optical coupling for optical interconnects. A dynamic card-to-backplane optical interconnects system has also been demonstrated based on polymer waveguides with tunable optofluidic couplers. The operation of the tunable optofluidic coupler is accomplished by controlling the position of air bubbles and index matching liquid in the perpendicular microfluidic channel for refractive index modulation. The dynamic activation and deactivation of the backplane optofluidic couplers can save the optical signal power. 10 Gbps eye diagrams of the dynamic optical interconnect link have been demonstrated showing the needed high performance optical interconnection. The design and fabrication of planar concave grating (PCG) wavelength demultiplexer on SU-8 polymer waveguides is presented for wavelength division multiplexing system to further support optical interconnection applications. The PCG wavelength demultiplexers with a flattened spectral response are accomplished by innovative design of a multi-mode interference coupler as input to the PCG. The mode field distribution at the PCG planar input is controlled by adjusting the width of an input waveguide taper connected to multi-mode interference coupler. By extending the channel number and density, the PCG wavelength demultiplexer can become a compact optical spectrometer which could be used to realize a portable optical coherence tomography system. The design of a 200-channel and a 1024-channel PCG spectrometers with low crosstalk, small channel loss, good uniformity, and chip size of 3 cm x 3 cm and 8 cm x 8 cm, respectively, has been performed. An alternative quicker solution using cylindrical optics with a vertical beam size of about 3 mm in the diffraction plane is also demonstrated to achieve a compact optical spectrometer, which is capable of supporting optical coherence tomography subsurface imaging applications.

  3. Cryosurgery treatment of actinic keratoses monitored by optical coherence tomography

    DEFF Research Database (Denmark)

    Themstrup, L.; Banzhaf, C.; Jemec, G.B.E.; Mogensen, M.

    2013-01-01

    Background: Optical coherence tomography (OCT) is a non-invasive optical imaging technique providing high-resolution images. OCT may be useful as a monitoring tool during treatment of actinic keratoses (AK) and skin cancer. Objective: To examine and describe how OCT skin morphology changes when the tissue is exposed to the effects of cryotherapy. Methods: Normal ex vivo skin and in vivo AK lesions were examined. Cryotherapy was applied and OCT images were acquired at defined time points. OCT mor...

  4. Superresolution and Corrections to the Diffusion Approximation in Optical Tomography

    CERN Document Server

    Panasyuk, G Y; Schotland, J C; Panasyuk, George Y.; Markel, Vadim A.; Schotland, John C.

    2005-01-01

    We demonstrate that the spatial resolution of images in optical tomography is not limited to the fundamental length scale of one transport mean free path. This result is facilitated by the introduction of novel corrections to the standard integral equations of scattering theory within the diffusion approximation to the radiative transport equation.

  5. Spectral domain optical coherence tomography and microperimetry in foveal hypoplasia

    Directory of Open Access Journals (Sweden)

    Swakshyar Saumya Pal

    2011-01-01

    Full Text Available A case of foveal hypoplasia associated with ocular albinism with anatomic and functional changes by various techniques using spectral domain optical coherence tomography (SD-OCT, microperimeter and confocal scanning laser ophthalmoscope is described. This case highlights the importance of microperimeter in detecting the functional abnormalities of vision and SD-OCT in identifying the retinal laminar abnormalities in foveal hypoplasia.

  6. Spectral domain optical coherence tomography and microperimetry in foveal hypoplasia

    Science.gov (United States)

    Pal, Swakshyar Saumya; Gella, Laxmi; Sharma, Tarun; Raman, Rajiv

    2011-01-01

    A case of foveal hypoplasia associated with ocular albinism with anatomic and functional changes by various techniques using spectral domain optical coherence tomography (SD-OCT), microperimeter and confocal scanning laser ophthalmoscope is described. This case highlights the importance of microperimeter in detecting the functional abnormalities of vision and SD-OCT in identifying the retinal laminar abnormalities in foveal hypoplasia. PMID:22011499

  7. Improving spatial resolution and contrast in ultrasound modulated optical tomography

    Science.gov (United States)

    Huynh, N. T.; Ruan, H.; Mather, M. L.; Hayes-Gill, B. R.; Morgan, S. P.

    2012-02-01

    Ultrasound imaging has benefited from non-linear approaches to improve image resolution and reduce the effects of side-lobes. A system for performing second harmonic ultrasound modulated optical tomography is demonstrated which incorporates both pulsed optical illumination and acoustic excitation. A pulse acoustic inversion scheme is employed which allows the second harmonic ultrasound modulated optical signal to be obtained while still maintaining a short pulse length of the acoustic excitation. For the experiments carried out the method demonstrates a reduction in the effective line spread function from 4mm for the fundamental to 2.4mm for the second harmonic. The first use of pulsed ultrasound modulated optical tomography in imaging fluorescent targets is also discussed. Simple experiments show that by changing the length of the acoustic pulse the image contrast can be optimized. The modulation depth of the detected signal is greatest when the length of the object along the acoustic axis is an odd number of half wavelengths and is weakest when the object is an integer multiple of an acoustic wavelength. Preliminary ultrasound modulated imaging results are also presented where the target generates light within the medium without the use of an external light source. Although signal to noise ratio is likely to be a major challenge, this result highlights a potentially useful application of ultrasound modulated optical tomography in bio- or chemi-luminescence imaging.

  8. Characterization of the dental pulp using optical coherence tomography

    Science.gov (United States)

    Kauffman, C. M. F.; Carvalho, M. T.; Araujo, R. E.; Freitas, A. Z.; Zezell, D. M.; Gomes, A. S. L.

    2006-02-01

    The inner structure of teeth, i.e. the root canal anatomy, is very complex. However a good knowledge of endodontic architecture is the first step towards successful endodontic treatment. Optical coherence tomography (OCT) is a powerful technique to generate images of hard and soft tissue. Its images show dependency on the optical properties of the tissue under analysis. Changes in the scattering and absorption of tissues can be observed through the OCT images. In this work, we used optical coherence tomography to perform in vitro studies of the inner structure of the first molar of albino rats (Rattus norvegicus). Focusing on the pulp chamber and in the root canal, we compare the images generated with the OCT technique to the histology. We are analyzing the feasibility of OCT to help on the diagnostic of endodontic diseases.

  9. Imaging of dental implant osseointegration using optical coherent tomography

    Science.gov (United States)

    Ionita, I.; Reisen, P.

    2009-02-01

    Investigation of initial implant stability with different dental implant designs is an important task to obtain good quality dental implants. Failure of a dental implant is often related to failure to osseointegrate correctly. Optical Coherent Tomography is a competitive non-invasive method of osseointegration investigation. FD-OCT with Swept Source was used to obtain 3-D image of the peri-implant tissue (soft and hard) in the case of mandible fixed screw. 1350 nm centered laser source give better images than 850 nm laser source for hard tissue imaging. Present work suggests that Optical Coherent Tomography is a proper technique to obtain the image of the contact tissue-metal screw. OCT images are useful to evaluate optical properties of bone tissues.

  10. Polarization-Sensitive Quantum Optical Coherence Tomography: Experiment

    CERN Document Server

    Booth, Mark C; Teich, Malvin Carl

    2010-01-01

    Polarization-sensitive quantum optical coherence tomography (PS-QOCT) makes use of a Type-II twin-photon light source for carrying out optical sectioning with polarization sensitivity. A BBO nonlinear optical crystal pumped by a Ti:sapphire psec-pulsed laser is used to confirm the theoretical underpinnings of this imaging paradigm. PS-QOCT offers even-order dispersion cancellation with simultaneous access to the group-velocity dispersion characteristics of the interstitial medium between the reflecting surfaces of the sample.

  11. Optical computed tomography liquid calibration phantom

    Science.gov (United States)

    Jordan, K.

    2013-06-01

    Fluorinated ethylene propylene tubing is investigated as a method of preparing a contrast-resolution phantom for quantitative characterization of optical CT scanners and hydrogel dosimeters. Two sizes of tubing were examined: 6 and 13 mm inner diameter with 0.75 and 0.5 mm wall thicknesses, respectively. Water solutions of carbon black, nanoparticles in micelles provided continuously adjustable absorption contrast. Cross-sectional slices from two phantoms scanned with two different optical CT scanners are presented. Reconstructions from these simple phantoms can be used to identify scanner artefacts and improve instrument design. These phantoms represent a more reproducible approach than casting "gel fingers" into gel phantoms for system characterization. The thinner walled tubes have fewer optical artefacts.

  12. Optical computed tomography liquid calibration phantom

    International Nuclear Information System (INIS)

    Fluorinated ethylene propylene tubing is investigated as a method of preparing a contrast-resolution phantom for quantitative characterization of optical CT scanners and hydrogel dosimeters. Two sizes of tubing were examined: 6 and 13 mm inner diameter with 0.75 and 0.5 mm wall thicknesses, respectively. Water solutions of carbon black, nanoparticles in micelles provided continuously adjustable absorption contrast. Cross-sectional slices from two phantoms scanned with two different optical CT scanners are presented. Reconstructions from these simple phantoms can be used to identify scanner artefacts and improve instrument design. These phantoms represent a more reproducible approach than casting ''gel fingers'' into gel phantoms for system characterization. The thinner walled tubes have fewer optical artefacts.

  13. Wavelength-encoded tomography based on optical temporal Fourier transform

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Chi; Wong, Kenneth K. Y., E-mail: kywong@eee.hku.hk [Photonic Systems Research Laboratory, Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road (Hong Kong)

    2014-09-01

    We propose and demonstrate a technique called wavelength-encoded tomography (WET) for non-invasive optical cross-sectional imaging, particularly beneficial in biological system. The WET utilizes time-lens to perform the optical Fourier transform, and the time-to-wavelength conversion generates a wavelength-encoded image of optical scattering from internal microstructures, analogous to the interferometery-based imaging such as optical coherence tomography. Optical Fourier transform, in principle, comes with twice as good axial resolution over the electrical Fourier transform, and will greatly simplify the digital signal processing after the data acquisition. As a proof-of-principle demonstration, a 150?-?m (ideally 36??m) resolution is achieved based on a 7.5-nm bandwidth swept-pump, using a conventional optical spectrum analyzer. This approach can potentially achieve up to 100-MHz or even higher frame rate with some proven ultrafast spectrum analyzer. We believe that this technique is innovative towards the next-generation ultrafast optical tomographic imaging application.

  14. Optical Coherence Tomography: Modeling and Applications

    DEFF Research Database (Denmark)

    Thrane, Lars

    in previous theoretical models of OCT systems. It is demonstrated that the shower curtain effect is of utmost importance in the theoretical description of an OCT system. The analytical model, together with proper noise analysis of the OCT system, enables calculation of the SNR, where the optical...

  15. Optical tomography of the aurora and EISCAT

    OpenAIRE

    H. U. Frey; Frey, S.; Lanchester, B. S.; Kosch, M.

    1998-01-01

    Tomographic reconstruction of the three-dimensional auroral arc emission is used to obtain vertical and horizontal distributions of the optical auroral emission. Under the given experimental conditions with a very limited angular range and a small number of observers, algebraic reconstruction methods generally yield better results than transform techniques. Different algebraic reconstruction methods are tested with an auroral arc model and the best results are obtained with an iterative least...

  16. Trends in optical coherence tomography applied to medical imaging

    Science.gov (United States)

    Podoleanu, Adrian G.

    2014-01-01

    The number of publications on optical coherence tomography (OCT) continues to double every three years. Traditionally applied to imaging the eye, OCT is now being extended to fields outside ophthalmology and optometry. Widening its applicability, progress in the core engine of the technology, and impact on development of novel optical sources, make OCT a very active and rapidly evolving field. Trends in the developments of different specific devices, such as optical sources, optical configurations and signal processing will be presented. Encompassing studies on both the configurations as well as on signal processing themes, current research in Kent looks at combining spectral domain with time domain imaging for long axial range and simultaneous imaging at several depths. Results of the collaborative work of the Applied Optics Group in Kent with organisers of this conference will be presented, with reference to 3D monitoring of abfraction.

  17. Computational adaptive optics for broadband optical interferometric tomography of biological tissue

    Science.gov (United States)

    Boppart, Stephen A.

    2015-03-01

    High-resolution real-time tomography of biological tissues is important for many areas of biological investigations and medical applications. Cellular level optical tomography, however, has been challenging because of the compromise between transverse imaging resolution and depth-of-field, the system and sample aberrations that may be present, and the low imaging sensitivity deep in scattering tissues. The use of computed optical imaging techniques has the potential to address several of these long-standing limitations and challenges. Two related techniques are interferometric synthetic aperture microscopy (ISAM) and computational adaptive optics (CAO). Through three-dimensional Fourierdomain resampling, in combination with high-speed OCT, ISAM can be used to achieve high-resolution in vivo tomography with enhanced depth sensitivity over a depth-of-field extended by more than an order-of-magnitude, in realtime. Subsequently, aberration correction with CAO can be performed in a tomogram, rather than to the optical beam of a broadband optical interferometry system. Based on principles of Fourier optics, aberration correction with CAO is performed on a virtual pupil using Zernike polynomials, offering the potential to augment or even replace the more complicated and expensive adaptive optics hardware with algorithms implemented on a standard desktop computer. Interferometric tomographic reconstructions are characterized with tissue phantoms containing sub-resolution scattering particles, and in both ex vivo and in vivo biological tissue. This review will collectively establish the foundation for high-speed volumetric cellular-level optical interferometric tomography in living tissues.

  18. Photoacoustic tomography guided diffuse optical tomography for small-animal model

    Science.gov (United States)

    Wang, Yihan; Gao, Feng; Wan, Wenbo; Zhang, Yan; Li, Jiao

    2015-03-01

    Diffuse optical tomography (DOT) is a biomedical imaging technology for noninvasive visualization of spatial variation about the optical properties of tissue, which can be applied to in vivo small-animal disease model. However, traditional DOT suffers low spatial resolution due to tissue scattering. To overcome this intrinsic shortcoming, multi-modal approaches that incorporate DOT with other imaging techniques have been intensively investigated, where a priori information provided by the other modalities is normally used to reasonably regularize the inverse problem of DOT. Nevertheless, these approaches usually consider the anatomical structure, which is different from the optical structure. Photoacoustic tomography (PAT) is an emerging imaging modality that is particularly useful for visualizing lightabsorbing structures embedded in soft tissue with higher spatial resolution compared with pure optical imaging. Thus, we present a PAT-guided DOT approach, to obtain the location a priori information of optical structure provided by PAT first, and then guide DOT to reconstruct the optical parameters quantitatively. The results of reconstruction of phantom experiments demonstrate that both quantification and spatial resolution of DOT could be highly improved by the regularization of feasible-region information provided by PAT.

  19. Quantum-optical coherence tomography with dispersion cancellation

    International Nuclear Information System (INIS)

    We propose a technique, called quantum-optical coherence tomography (QOCT), for carrying out tomographic measurements with dispersion-cancelled resolution. The technique can also be used to extract the frequency-dependent refractive index of the medium. QOCT makes use of a two-photon interferometer in which a swept delay permits a coincidence interferogram to be traced. The technique bears a resemblance to classical optical coherence tomography (OCT). However, it makes use of a nonclassical entangled twin-photon light source that permits measurements to be made at depths greater than those accessible via OCT, which suffers from the deleterious effects of sample dispersion. Aside from the dispersion cancellation, QOCT offers higher sensitivity than OCT as well as an enhancement of resolution by a factor of two for the same source bandwidth. QOCT and OCT are compared using an idealized sample

  20. Clustered targets imaged by optical tomography guided by ultrasound

    OpenAIRE

    Xu, Yan; Xu, Chen; Zhu, Quing

    2011-01-01

    Clustered small breast lesions may be present in the neighboring areas and are difficult to accurately resolve and quantify in diffuse optical tomography. In addition, larger cancers are often accompanied by clustered satellite lesions in the neighboring areas, which are also difficult to resolve and quantify. To improve the light quantification of clustered lesions, a new multi-zone reconstruction algorithm guided by co-registered ultrasound (US) was investigated using simulations, phantoms,...

  1. Predicting visual outcomes for macular disease using optical coherence tomography

    OpenAIRE

    Pearse A. Keane; Sadda, SriniVas R

    2011-01-01

    In recent years, the management of macular disease has undergone radical changes, in part because of new therapeutic approaches, but also due to the introduction of a new imaging modality – optical coherence tomography (OCT). The application of OCT imaging has clarified many aspects of chorioretinal disease pathophysiology and elucidated many hitherto unrecognized disease characteristics. From an early stage in its development, OCT has also been revolutionary in attempting to extract clinical...

  2. Analysis of skin lesions using laminar optical tomography

    OpenAIRE

    Muldoon, Timothy J.; Burgess, Sean A.; Chen, Brenda R; Ratner, Désirée; Hillman, Elizabeth M. C.

    2012-01-01

    Evaluation of suspicious skin lesions by dermatologists is usually accomplished using white light examination and direct punch or surgical biopsy. However, these techniques can be imprecise for estimating a lesion’s margin or level of dermal invasion when planning surgical resection. Laminar optical tomography (LOT) is an imaging technique capable of acquiring depth-sensitive information within scattering tissues. Here, we explore whether LOT data can be used to predict the depth and thicknes...

  3. Heartbeat OCT: in vivo intravascular megahertz-optical coherence tomography

    OpenAIRE

    Wang, Tianshi; Pfeiffer, Tom; Regar, Evelyn; Wieser, Wolfgang; Beusekom, Heleen; Lancee, Charles T.; Springeling, Geert; Krabbendam, Ilona; Steen, Antonius F.W. van der; Huber, Robert; Soest, Gijs

    2015-01-01

    Cardiac motion artifacts, non-uniform rotational distortion and undersampling affect the image quality and the diagnostic impact of intravascular optical coherence tomography (IV-OCT). In this study we demonstrate how these limitations of IV-OCT can be addressed by using an imaging system that we called “Heartbeat OCT”, combining a fast Fourier Domain Mode Locked laser, fast pullback, and a micromotor actuated catheter, designed to examine a coronary vessel in less than one cardiac cycle. We ...

  4. Tomography and optical properties of silver nano-inukshuk

    Science.gov (United States)

    Ghosh, Tanmay; Das, Pabitra; Ghosh, Tapas; Satpati, Biswarup

    2015-06-01

    Following a simple dip-and-rinse galvanic displacement reaction silver nano-inukshuks were prepared directly on germanium surfaces. Morphology, 3-dimensional (3D) structure, chemical composition and optical properties of the silver nanostructurs were investigated using scanning electron microscopy (SEM), scanning transmission electron microscopy (STEM), energy-dispersive X-ray spectroscopy (EDX), and cathodoluminescence (CL) spectroscopy. Exact 3D morphology was reconstructed in the by tomography mode of TEM.

  5. Clinical Applications of Anterior Segment Optical Coherence Tomography

    OpenAIRE

    Lim, Su-Ho

    2015-01-01

    Anterior segment optical coherence tomography (AS-OCT) was recently developed and has become a crucial tool in clinical practice. AS-OCT is a noncontact imaging device that provides the detailed structure of the anterior part of the eyes. In this review, the author will discuss the various clinical applications of AS-OCT, such as the normal findings, tear meniscus measurement, ocular surface disease (e.g., pterygium, pinguecula, and scleromalacia), architectural analysis after cataract surger...

  6. Extended hierarchical Bayesian diffuse optical tomography for removing scalp artifact

    OpenAIRE

    Shimokawa, Takeaki; Kosaka, Takashi; Yamashita, Okito; Hiroe, Nobuo; Amita, Takashi; Inoue, Yoshihiro; Sato, Masa-aki

    2013-01-01

    Functional near-infrared spectroscopy (fNIRS) can non-invasively measure hemodynamic responses in the cerebral cortex with a portable apparatus. However, the observation signal in fNIRS measurements is contaminated by the artifact signal from the hemodynamic response in the scalp. In this paper, we propose a method to separate the signals from the cortex and the scalp by estimating both hemodynamic changes by diffuse optical tomography (DOT). In the inverse problem of DOT, we introduce smooth...

  7. Revealing retroperitoneal liposarcoma morphology using optical coherence tomography

    Science.gov (United States)

    Carbajal, Esteban F.; Baranov, Stepan A.; Manne, Venu G. R.; Young, Eric D.; Lazar, Alexander J.; Lev, Dina C.; Pollock, Raphael E.; Larin, Kirill V.

    2011-02-01

    A new approach to distinguish normal fat, well-differentiated (WD), and dedifferentiated liposarcoma (LS) tumors is demonstrated, based on the use of optical coherence tomography (OCT). OCT images show the same structures seen with conventional histological methods. Our visual grading analysis is supported by numerical analysis of observed structures for normal fat and WDLS samples. Further development could apply the real-time and high resolution advantages of OCT for use in liposarcoma diagnosis and clinical procedures.

  8. Submicron Resolution Spectral-Domain Optical Coherence Tomography

    KAUST Repository

    Alarousu, Erkki

    2013-11-14

    Apparatuses and systems for submicron resolution spectral-domain optical coherence tomography (OCT) are disclosed. The system may use white light sources having wavelengths within 400-1000 nanometers, and achieve resolution below 1 .mu.m. The apparatus is aggregated into a unitary piece, and a user can connect the apparatus to a user provided controller and/or light source. The light source may be a supercontinuum source.

  9. Retinal and choroidal intravascular spectral-domain optical coherence tomography

    DEFF Research Database (Denmark)

    Willerslev, Anne; Li, Xiao Qiang; Cordtz, Peter; Munch, Inger C; Larsen, Michael

    2014-01-01

    Purpose:? To examine retinal and choroidal blood vessels using spectral-domain optical coherence tomography (SD-OCT). Methods:? Retrospective case series. Results:? Scans through retinal blood vessels in healthy subjects demonstrated vessel wall reflexes and a tri-layer profile of the blood column on longitudinal scans and a figure-of-eight configuration on cross-sectional scans. Intravascular reflectivity decreased with increasingly oblique angles of observation and was absent when blood flow w...

  10. Modeling light–tissue interaction in optical coherence tomography systems

    DEFF Research Database (Denmark)

    Andersen, Peter E.; Jørgensen, Thomas Martini; Thrane, Lars; Tycho, Andreas; Yura, Harold T.

    2015-01-01

    Optical coherence tomography (OCT) performs high-resolution, cross-sectional tomographic imaging of the internal tissue microstructure by measuring backscattered or backreflected light. The scope of this chapter is to present analytical and numerical models that are able to describe light-tissue interactions and its influence on the performance of OCT systems including multiple scattering effects in heterogeneous media. In general, these models, analytical as well as numerical, may serve as impo...

  11. Imaging cutaneous T-Cell lymphoma with optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H.C.; Hansen Stamp, I.M.; Jemec, G.B.E.

    2012-01-01

    Aim: To investigate the presentation of a patch-stage cutaneous T-cell lymphoma (CTCL) using optical coherence tomography (OCT). Methods: A patient with a patch caused by CTCL was photographed digitally, OCT-scanned and biopsied. A normal skin area adjacent to the patch was OCT-scanned for comparison, but not biopsied. The OCT image and the histological image were compared. Results: The OCT images illustrated a thickened and hyperreflective stratum corneum. OCT also demonstrated several elongate...

  12. Single camera based spectral domain polarization sensitive optical coherence tomography

    OpenAIRE

    Baumann, Bernhard; Götzinger, Erich; Pircher, Michael; Hitzenberger, Christoph K.

    2007-01-01

    We developed a new spectral domain polarization sensitive optical coherence tomography (SD PS-OCT) system that requires only a single spectrometer CCD camera. The spectra of the horizontal and vertical polarization channels are imaged adjacent to each other on a 2048 pixel line scan camera, using 1024 pixels for each channel. Advantages of the system are reduced costs and complexity, lower demands on timing and triggering circuitry, and higher robustness against camera misalignments. We discu...

  13. Real-time compressive sensing spectral domain optical coherence tomography

    OpenAIRE

    Xu, Daguang; Yong HUANG; Kang, Jin U

    2014-01-01

    We developed and demonstrated real-time compressive sensing (CS) spectral domain optical coherence tomography (SD OCT) B-mode imaging at excess of 70 fps. The system was implemented using a conventional desktop computer architecture having three graphics processing units (GPUs). This result shows speed gain of 459 and 112 times compared to best CS implementations based on the MATLAB and C++ respectively and that real-time CS-SDOCT imaging can finally be realized.

  14. Real-time compressive sensing spectral domain optical coherence tomography.

    Science.gov (United States)

    Xu, Daguang; Huang, Yong; Kang, Jin U

    2014-01-01

    We developed and demonstrated real-time compressive sensing (CS) spectral domain optical coherence tomography (SD-OCT) B-mode imaging at excess of 70 fps. The system was implemented using a conventional desktop computer architecture having three graphics processing units. This result shows speed gain of 459 and 112 times compared to the best CS implementations based on the MATLAB and C++, respectively, and that real-time CS SD-OCT imaging can finally be realized. PMID:24365826

  15. Anatomical atlas-guided diffuse optical tomography of brain activation

    OpenAIRE

    Custo, Anna; Boas, David A; Tsuzuki, Daisuke; Dan, Ippeita; Mesquita, Rickson; Fischl, Bruce; Grimson, W. Eric L.; Wells, Williams

    2009-01-01

    We describe a neuro imaging protocol that utilizes an anatomical atlas of the human head to guide Diffuse optical tomography of human brain activation. The protocol is demonstrated by imaging the hemodynamic response to median nerve stimulation in three healthy subjects, and comparing the images obtained using a head atlas with the images obtained using the subject-specific head anatomy. The results indicate that using the head atlas anatomy it is possible to reconstruct the location of the b...

  16. Anterior Segment Optical Coherence Tomography Imaging of Haab Striae.

    Science.gov (United States)

    Spierer, Oriel; Cavuoto, Kara M; Suwannaraj, Sirinya; Chang, Ta C

    2015-01-01

    The authors present a case series demonstrating the anterior segment optical coherence tomography (AS-OCT) findings of Haab striae in three patients with congenital glaucoma. The use of AS-OCT in the assessment of Haab striae in pediatric glaucoma is novel, previously undescribed, and possibly allows differentiation between acute and chronic corneal changes. [J Pediatr Ophthalmol Strabismus. 2015;52:e55-e58.]. PMID:26473585

  17. Multifocal Cysticercosis with Optical Coherence Tomography Findings in a Child

    OpenAIRE

    Mrs Manisha Agarwal; Vivek Jha; Chaudhary, Somendra P.; Singh, Ashok K.

    2012-01-01

    We herein report a case with multifocal cysticercosis - sub-conjunctival cysticercus cyst, sub-retinal cysticercosis, and neurocysticercosis in a child. The optical coherence tomography (OCT) findings of the sub-retinal cysticercus cyst are reported. He was treated with anti-helminthic drugs and oral prednisolone followed by surgical removal of the sub-retinal cyst. He subsequently underwent silicone oil removal with lens aspiration and intraocular lens implantation maintaining stable vision

  18. Multifocal cysticercosis with optical coherence tomography findings in a child

    Directory of Open Access Journals (Sweden)

    Manisha Agarwal

    2012-01-01

    Full Text Available We herein report a case with multifocal cysticercosis - sub-conjunctival cysticercus cyst, sub-retinal cysticercosis, and neurocysticercosis in a child. The optical coherence tomography (OCT findings of the sub-retinal cysticercus cyst are reported. He was treated with anti-helminthic drugs and oral prednisolone followed by surgical removal of the sub-retinal cyst. He subsequently underwent silicone oil removal with lens aspiration and intraocular lens implantation maintaining stable vision

  19. Signal processing in optical coherence tomography for aerospace material characterization:

    OpenAIRE

    Liu, P.; Groves, R.M.; Benedictus, R.

    2013-01-01

    Based on a customized time-domain optical coherence tomography (OCT) system, a series of signal processing approaches have been designed and reviewed. To improve demodulation accuracy and image quality, demodulation approaches such as median filter, Hilbert transform, and envelope detector were investigated with simulated as well as experimental data. Without noise, the Hilbert transform has the best performance, but after considering the narrow-band noise in the modulated signal, the envelop...

  20. Autocorrelation optical coherence tomography for glucose quantification in blood

    Science.gov (United States)

    Ullah, H.; Gilanie, G.; Hussain, F.; Ahmad, E.

    2015-12-01

    We report a new method for glucose monitoring in blood tissue based on the autocorrelation function (ACF) analysis in Fourier domain optical coherence tomography (FD-OCT). We have determined the changes in OCT monitoring signals’ depth to characterize the modulations in ACFs for quantitative measurements of glucose concentrations in blood. We found that an increase in the concentration of glucose in blood results in decreased OCT monitoring signal due to the increase in the refractive index of the media.

  1. Ultrasound induced improvement in optical coherence tomography (OCT) resolution

    OpenAIRE

    Schenk, John O.; Brezinski, Mark E.

    2002-01-01

    Optical coherence tomography (OCT) is a rapidly emerging technology for high-resolution biomedical imaging. The axial resolution of this technology is determined by the bandwidth of the source. Commercial sources generally provide resolutions of 10–20 μm whereas laboratory-based solid state lasers have resolutions of ≈4 μm. The resolution in tissue depends almost exclusively on detecting single scattered events. However, the phenomenon known as multiple scattering results in a deterioration o...

  2. Optical Coherence Tomography of Retinal and Choroidal Tumors

    OpenAIRE

    Shields, Carol L.; Sandor Ferenczy; Sanket U. Shah; Emil Anthony T. Say

    2011-01-01

    Optical coherence tomography (OCT) has revolutionized the field of ophthalmology since its introduction 20 years ago. Originally intended primarily for retina specialists to image the macula, it has found its role in other subspecialties that include glaucoma, cornea, and ocular oncology. In ocular oncology, OCT provides axial resolution to approximately 7 microns with cross-sectional images of the retina, delivering valuable information on the effects of intraocular tumors on the retinal arc...

  3. Multifocal Cysticercosis with Optical Coherence Tomography Findings in a Child

    OpenAIRE

    Agarwal, Manisha; Jha, Vivek; Chaudhary, Somendra P.; Singh, Ashok K.

    2012-01-01

    We herein report a case with multifocal cysticercosis – sub-conjunctival cysticercus cyst, sub-retinal cysticercosis, and neurocysticercosis in a child. The optical coherence tomography (OCT) findings of the sub-retinal cysticercus cyst are reported. He was treated with anti-helminthic drugs and oral prednisolone followed by surgical removal of the sub-retinal cyst. He subsequently underwent silicone oil removal with lens aspiration and intraocular lens implantation maintaining stable vision

  4. Diagnosis of cardiovascular diseases based on diffuse optical tomography system

    Science.gov (United States)

    Yu, Zong-Han; Wu, Chun-Ming; Lin, Yo-Wei; Chuang, Ming-Lung; Tsai, Jui-che; Sun, Chia-Wei

    2008-02-01

    Diffuse optical tomography (DOT) is a technique to assess the spatial variation in absorption and scattering properties of the biological tissues. DOT provides the measurement of changes in concentrations of oxy-hemoglobin and deoxy-hemoglobin. The oxygenation images are reconstructed by the measured optical signals with nearest-neighbor pairs of sources and detectors. In our study, a portable DOT system is built with optode design on a flexible print circuit board (FPCB). In experiments, the hemodynamics temporal evolution of exercises and vessel occlusions are observed with in vivo measurements form normal subjects and some patients in intensive care unit.

  5. Optical spectroscopy and Doppler tomography of Cygnus X-2

    OpenAIRE

    Elebert, P.; Callanan, P.J.; Torres, M A P; M.R. Garcia

    2009-01-01

    We present phase resolved optical spectroscopy and Doppler tomography of V1341 Cygni, the optical counterpart to the neutron star low mass X-ray binary Cygnus X-2. We derive a radial velocity curve for the secondary star, finding a projected radial velocity semi-amplitude of K2 = 79 +/- 3 km/s, leading to a mass function of 0.51 +/- 0.06 Msun, ~30% lower than the previous estimate. We tentatively attribute the lower value of K2 (compared to that obtained by other authors) to...

  6. First measurements with the test stand for optical beam tomography

    OpenAIRE

    Wagner, Christopher; Meusel, Oliver; Ulrich, Ratzinger; Reichau, Hermine

    2011-01-01

    A test stand for optical beam tomography was developed. As a new non-destructive beam-diagnostic system for high current ion beams, the test stand will be installed in the low energy beam transport section (LEBT) of the Frankfurt Neutron Source (FRANZ) behind the chopper system. The test stand consists of a rotatable vacuum chamber with a mounted CCD camera. The maximum rotation angle amounts to 270°. In a first phase the optical beam profile measurement and 3D density reconstruction is teste...

  7. Fourier domain optical coherence tomography using optical frequency comb

    Science.gov (United States)

    Bajraszewski, T.; Wojtkowski, M.; Szkulmowska, A.; Fojt, W.; Szkulmowski, M.; Kowalczyk, A.

    2007-02-01

    Novel Fourier domain OCT method and instrumentation using Optical Frequency Comb (OFC) is demonstrated. This technique can overcome some limitations of Spectral OCT and Optical Frequency domain Imaging (Swept Source OCT) and enables ultrahigh resolution imaging in 800 nm range. In the novel method external OFC generator placed after the broad band light source is used. We will demonstrate preliminary data showing the general performance, advantages and limitations of the Fourier domain OCT method using Optical Frequency Comb generator based on Fabry-Perot interferometer (F-P). High quality, high resolution cross-sectional images of biological samples obtained with the presented technique are shown.

  8. Wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice

    OpenAIRE

    Jian, Yifan; Jing XU; Gradowski, Martin A.; Bonora, Stefano; Zawadzki, Robert J.; Sarunic, Marinko V.

    2014-01-01

    We present wavefront sensorless adaptive optics (WSAO) Fourier domain optical coherence tomography (FD-OCT) for in vivo small animal retinal imaging. WSAO is attractive especially for mouse retinal imaging because it simplifies optical design and eliminates the need for wavefront sensing, which is difficult in the small animal eye. GPU accelerated processing of the OCT data permitted real-time extraction of image quality metrics (intensity) for arbitrarily selected retinal layers to be optimi...

  9. Algorithm for localized adaptive diffuse optical tomography and its application in bioluminescence tomography

    Science.gov (United States)

    Naser, Mohamed A.; Patterson, Michael S.; Wong, John W.

    2014-04-01

    A reconstruction algorithm for diffuse optical tomography based on diffusion theory and finite element method is described. The algorithm reconstructs the optical properties in a permissible domain or region-of-interest to reduce the number of unknowns. The algorithm can be used to reconstruct optical properties for a segmented object (where a CT-scan or MRI is available) or a non-segmented object. For the latter, an adaptive segmentation algorithm merges contiguous regions with similar optical properties thereby reducing the number of unknowns. In calculating the Jacobian matrix the algorithm uses an efficient direct method so the required time is comparable to that needed for a single forward calculation. The reconstructed optical properties using segmented, non-segmented, and adaptively segmented 3D mouse anatomy (MOBY) are used to perform bioluminescence tomography (BLT) for two simulated internal sources. The BLT results suggest that the accuracy of reconstruction of total source power obtained without the segmentation provided by an auxiliary imaging method such as x-ray CT is comparable to that obtained when using perfect segmentation.

  10. Algorithm for localized adaptive diffuse optical tomography and its application in bioluminescence tomography

    International Nuclear Information System (INIS)

    A reconstruction algorithm for diffuse optical tomography based on diffusion theory and finite element method is described. The algorithm reconstructs the optical properties in a permissible domain or region-of-interest to reduce the number of unknowns. The algorithm can be used to reconstruct optical properties for a segmented object (where a CT-scan or MRI is available) or a non-segmented object. For the latter, an adaptive segmentation algorithm merges contiguous regions with similar optical properties thereby reducing the number of unknowns. In calculating the Jacobian matrix the algorithm uses an efficient direct method so the required time is comparable to that needed for a single forward calculation. The reconstructed optical properties using segmented, non-segmented, and adaptively segmented 3D mouse anatomy (MOBY) are used to perform bioluminescence tomography (BLT) for two simulated internal sources. The BLT results suggest that the accuracy of reconstruction of total source power obtained without the segmentation provided by an auxiliary imaging method such as x-ray CT is comparable to that obtained when using perfect segmentation. (paper)

  11. Optical Coherence Tomography: Modeling and Applications

    DEFF Research Database (Denmark)

    Thrane, Lars

    2001-01-01

    An analytical model is presented that is able to describe the performance of OCT systems in both the single and multiple scattering regimes simultaneously. This model inherently includes the shower curtain effect, well-known for light propagation through the atmosphere. This effect has been omitted in previous theoretical models of OCT systems. It is demonstrated that the shower curtain effect is of utmost importance in the theoretical description of an OCT system. The analytical model, together with proper noise analysis of the OCT system, enables calculation of the SNR, where the optical properties of the tissue are taken into account. Furthermore, by using the model, it is possible to determine the lateral resolution of OCT systems at arbitrary depths in the scattering tissue. During the Ph.D. thesis project, an OCT system has been constructed, and the theoretical model is verified experimentally using this system. A demonstration of the imaging capabilities of the OCT system is given. Moreover, a novel truereflection OCT imaging algorithm, based on the new OCT model presented in this thesis, is demonstrated. Finally, a theoretical analysis of the Wigner phase-space distribution function for the OCT geometry, i.e., reflection geometry, is developed. As in the new OCT model, multiple scattered photons has been taken into account together with multiple scattering effects. As an important result, a novel method of creating images based on measurements of the momentum width of the Wigner phase-space distribution is presented, and compared with conventional OCT.

  12. A comprehensive method for optical-emission computed tomography

    Science.gov (United States)

    Thomas, Andrew; Bowsher, James; Roper, Justin; Oliver, Tim; Dewhirst, Mark; Oldham, Mark

    2010-07-01

    Optical-computed tomography (CT) and optical-emission computed tomography (ECT) are recent techniques with potential for high-resolution multi-faceted 3D imaging of the structure and function in unsectioned tissue samples up to 1-4 cc. Quantitative imaging of 3D fluorophore distribution (e.g. GFP) using optical-ECT is challenging due to attenuation present within the sample. Uncorrected reconstructed images appear hotter near the edges than at the center. A similar effect is seen in SPECT/PET imaging, although an important difference is attenuation occurs for both emission and excitation photons. This work presents a way to implement not only the emission attenuation correction utilized in SPECT, but also excitation attenuation correction and source strength modeling which are unique to optical-ECT. The performance of the correction methods was investigated by the use of a cylindrical gelatin phantom whose central region was filled with a known distribution of attenuation and fluorophores. Uncorrected and corrected reconstructions were compared to a sectioned slice of the phantom imaged using a fluorescent dissecting microscope. Significant attenuation artifacts were observed in uncorrected images and appeared up to 80% less intense in the central regions due to attenuation and an assumed uniform light source. The corrected reconstruction showed agreement throughout the verification image with only slight variations (~5%). Final experiments demonstrate the correction in tissue as applied to a tumor with constitutive RFP.

  13. Large area full-field optical coherence tomography

    Science.gov (United States)

    Chang, Shoude; Sherif, Sherif; Flueraru, Costel

    2006-09-01

    Optical Coherence Tomography (OCT) is a fundamentally new type of optical imaging technology. OCT performs high resolution, cross-sectional tomographic imaging of the internal structure in materials and biological systems. The biomedical applications of the OCT imaging systems have been developed for diagnostics of ophthalmology, dermatology, dentistry and cardiology. Most of existing OCT systems use point-scanning based technology, however, the 3-axis scanning makes the system slow and cumbersome. A few OCT systems working directly on 2D full-field images were reported, however, they are designed to work in a relatively small area, around couple of hundred microns square. In this paper, we present a design and implementation of a full-field OCT imaging system for acquiring tomography and with a working area around 15mm by 15 mm. The problems rising from full-field OCT are addressed and analyzed. The algorithms to extract the tomography are proposed. Two applications of multilayer information retrieval and 3D object imaging using full-field OCT are described.

  14. Tomography

    International Nuclear Information System (INIS)

    Apparatus is described for generating a two-dimensional back-projected image of a slice of an object in tomography. The apparatus uses optical techniques to perform the functions of filtering and back projection. Central to the technique is a cylindrical drum which rotates at a fast rate and whose rotational axis tilts at a slower rate. The novel method overcomes the problem of image blurring due to motion which occurs in many tomographic techniques. It also has the advantages of being less expensive and simpler compared to tomography using digital processing techniques which require fast computers. (UK)

  15. Piezoelectric scanning mirrors for endoscopic optical coherence tomography

    International Nuclear Information System (INIS)

    A novel piezoelectric scanning mirror design for endoscopic optical coherence tomography (OCT) is presented. OCT is an interferometric technique providing microscopic tomographic sectioning of biological samples with mm-range penetration capability in tissue and is suited for integration with endoscopes using fiber-based light delivery to the sample. The piezoelectric scanning mirror was designed to provide wide-range rapid forwarding-looking scanning of the optical beam at the distal end of a compact catheter. The optical scanner provides a large ratio of mirror aperture to device size with rectangular mirror sizes ranging from 600 µm × 840 µm to 840 µm × 1600 µm. Static angular displacements up to ±7° (mechanical angle) were demonstrated and resonance frequencies of hundreds of Hz (and up to 1–2 kHz) were measured, depending on the mirror size. The imaging capability of the piezoelectric scanner was demonstrated using a bench-top spectrometer-based Fourier-domain OCT system

  16. The Giant Magellan Telescope Laser Tomography Adaptive Optics System

    Science.gov (United States)

    Conan, Rodolphe; Bennet, Francis; Bouchez, Antonin; Van Dam, Marcos; Espeland, Brady; Gardouse, Warren; D'Orgeville, Celine; Paulin, N.; Piatrou, Piotr; Price, I.; Rigaut, François; Trancho, Gelys; Uhlendorf, Kristina

    2013-12-01

    Laser tomography adaptive optics (LTAO) will allow Extremely Large Telescope to get nearly diffraction limited images over a large fraction of the sky.For such systems, the sky coverage is limited by the number of natural guide star (NGS) suitable to estimate the tip and tilt (TT) modes of the atmosphere.The LTAO system of the Giant Magellan Telescope is using a single NGS which detector is located within the instrument. A deformable mirror (DM) in open--loop corrects the anisoplanatism error of the NGS wavefront.The DM command is derived from an off-axis tomographic reconstruction using the measurements from the Laser Guide Star wavefront sensors.The paper describes the tomography algorithm, a minimum variance reconstructor in the wavefront sensor space.The detail of the control architecture is shown including the TT, the focus and the truth sensors.As a conclusion, we will report on the expected sky coverage and performance of the system.

  17. A Low-Cost Method for Optical Tomography

    Directory of Open Access Journals (Sweden)

    Mohammad Ali Ansari

    2012-07-01

    Full Text Available INTRODUCTION: In this study, arrangement of a low-cost optical tomography device compared to other methods such as frequency domain diffuse tomography or time domain diffuse tomography is reported. This low-cost diffuse optical imaging technique is based on the detection of light after propagation in tissue. These detected signals are applied to predict the location of in-homogeneities inside phantoms. The device is assessed for phantoms representing homogenous healthy breast tissues as well as those representing healthy breast tissues with a lesion inside.METHODS: A diode laser at 780nm and 50 mW is used as the light source. The scattered light is then collected from the outer surface of the phantom by a detector. Both laser and detector are fiber coupled. The detector fiber may turn around the phantom to collect light scattered at different angles. Phantoms made of intralipid as the scattering medium and ink as the absorbing medium are used as samples. Light is collected after propagation in the phantoms and the capability of the device in collecting data and detecting lesions inside the phantoms is assessed. The fact that the detection fiber orbits around the sample and detects light from various angles has eliminated the need to use several detectors and optical fibers. The results obtained from experiments are compared with the results obtained from a finite element method (FEM solution of diffusion equation in cylindrical geometry written in FORTRAN.RESULTS: The graphs obtained experimentally and numerically are in good accordance with each other. The device has been able to detect lesions up to 13 mm inside the biological phantom.CONCLUSION: The data achieved by the optical tomography device is compared with the data achieved via a FEM code written in FORTRAN. The results indicate that the presented device is capable of providing the correct pattern of diffusely backscattered and transmitted light. The data achieved from the device is in excellent correlation with the numerical solution of the diffusion equation. Therefore, results indicate the applicability of the reported device. This device may be used as a base for an optical imaging. It is also capable of detecting lesions inside the phantoms

  18. A Review on the use of Optical Coherence Tomography in Medical Imaging

    Directory of Open Access Journals (Sweden)

    A. Stella

    2011-02-01

    Full Text Available Optical Coherence Tomography (OCT is a Three-dimensional imaging technique with ultrahigh spatial resolution even in highly scattering media. It is based on measurements of the reflected light from tissue discontinuities. Optical coherence tomography delivers high resolution images, because the test is based on light, rather than sound or radio frequency. Optical coherence tomography provides a 1 to 15 µm resolution but only a depth of 1 to 2 mm can be imaged in opaque tissues such as arteries or skin. In transparent tissues such as the eye, greater imaging depths are possible. In addition, optical coherence tomography is capable of providing information about tissue composition. This paper, aims at reviewing the working principle of Optical Coherence Tomography and the quality of the image produced through this technique. A major drawback of Optical Coherence Tomography image is that, it suffers from speckle noise.

  19. A Review on the use of Optical Coherence Tomography in Medical Imaging

    OpenAIRE

    Stella, A.; Bhushan Trivedi

    2011-01-01

    Optical Coherence Tomography (OCT) is a Three-dimensional imaging technique with ultrahigh spatial resolution even in highly scattering media. It is based on measurements of the reflected light from tissue discontinuities. Optical coherence tomography delivers high resolution images, because the test is based on light, rather than sound or radio frequency. Optical coherence tomography provides a 1 to 15 µm resolution but only a depth of 1 to 2 mm can be imaged in opaque tissues such as arteri...

  20. Self-calibrated algorithms for diffuse optical tomography and bioluminescence tomography using relative transmission images.

    Science.gov (United States)

    Naser, Mohamed A; Patterson, Michael S; Wong, John W

    2012-11-01

    Reconstruction algorithms for diffuse optical tomography (DOT) and bioluminescence tomography (BLT) have been developed based on diffusion theory. The algorithms numerically solve the diffusion equation using the finite element method. The direct measurements of the uncalibrated light fluence rates by a camera are used for the reconstructions. The DOT is self-calibrated by using all possible pairs of transmission images obtained with external sources along with the relative values of the simulated data and the calculated Jacobian. The reconstruction is done in the relative domain with the cancelation of any geometrical or optical factors. The transmission measurements for the DOT are used for calibrating the bioluminescence measurements at each wavelength and then a normalized system of equations is built up which is self-calibrated for the BLT. The algorithms have been applied to a three dimensional model of the mouse (MOBY) segmented into tissue regions which are assumed to have uniform optical properties. The DOT uses the direct method for calculating the Jacobian. The BLT uses a reduced space of eigenvectors of the Green's function with iterative shrinking of the permissible source region. The reconstruction results of the DOT and BLT algorithms show good agreement with the actual values when using either absolute or relative data. Even a small calibration error causes significant degradation of the reconstructions based on absolute data. PMID:23162719

  1. Optical coherence photoacoustic microscopy: accomplishing optical coherence tomography and photoacoustic microscopy with a single light source

    OpenAIRE

    ZHANG, XIANGYANG; Zhang, Hao F.; Jiao, Shuliang

    2012-01-01

    We developed optical coherence photoacoustic microscopy (OC-PAM) to demonstrate that the functions of optical coherence tomography (OCT) and photoacoustic microscopy (PAM) can be achieved simultaneously by using a single illuminating light source. We used a pulsed broadband laser centered at 580 nm and detected the absorbed photons through photoacoustic detection and the back-scattered photons with an interferometer. In OC-PAM, each laser pulse generates both one OCT A-line and one PAM A-line...

  2. Efficient sweep buffering in swept source optical coherence tomography using a fast optical switch

    OpenAIRE

    Dhalla, Al-Hafeez; Shia, Kevin; Izatt, Joseph A.

    2012-01-01

    We describe a novel buffering technique for increasing the A-scan rate of swept source optical coherence tomography (SSOCT) systems employing low duty cycle swept source lasers. This technique differs from previously reported buffering techniques in that it employs a fast optical switch, capable of switching in 60 ns, instead of a fused fiber coupler at the end of the buffering stage, and is therefore appreciably more power efficient. The use of the switch also eliminates patient exposure to ...

  3. Extending the effective imaging range of Fourier domain optical coherence tomography using a fiber optic switch

    OpenAIRE

    WANG, HUI; Pan, Yinsheng; Rollins, Andrew M.

    2008-01-01

    The effective imaging range of Fourier-domain optical coherence tomography is limited by fall-off. We present a very simple method to extend the effective imaging range with dual reference arms and a high speed fiber optic switch. The effective imaging range was increased by 1.8 with two reference arms compared with a single reference arm. Ex vivo tissue images showed significantly improved sensitivity over a large imaging range. Further extension of the imaging range is feasible with multipl...

  4. Thermal-light full-field optical coherence tomography

    OpenAIRE

    Vabre, Laurent; Dubois, Arnaud; Boccara, Claude

    2002-01-01

    We have built a high-resolution optical coherence tomography (OCT) system, based on a Linnik-type interference microscope, illuminated by a white-light thermal lamp. The extremely short coherence length of the illumination source and the large aperture of the objectives permit resolution close to 1 mm in three dimensions. A parallel detection scheme with a CCD camera provides cross-section x y image acquisition without scanning at a rate of up to 50 Hz. To our knowledge, our system has the hi...

  5. Optical diffraction tomography techniques for the study of cell pathophysiology

    CERN Document Server

    Kim, Kyoohyun; Shin, Seungwoo; Lee, SangYun; Yang, Su-A; Park, YongKeun

    2016-01-01

    Three-dimensional imaging of biological cells is crucial for the investigation of cell biology, provide valuable information to reveal the mechanisms behind pathophysiology of cells and tissues. Recent advances in optical diffraction tomography (ODT) have demonstrated the potential for the study of various cells with its unique advantages of quantitative and label-free imaging capability. To provide insight on this rapidly growing field of research and to discuss its applications in biology and medicine, we present the summary of the ODT principle and highlight recent studies utilizing ODT with the emphasis on the applications to the pathophysiology of cells.

  6. One step geometrical calibration method for optical coherence tomography

    Science.gov (United States)

    Díaz Díaz, Jesús; Stritzel, Jenny; Rahlves, Maik; Majdani, Omid; Reithmeier, Eduard; Ortmaier, Tobias; Roth, Bernhard

    2016-01-01

    We present a novel one-step calibration methodology for geometrical distortion correction for optical coherence tomography (OCT). A calibration standard especially designed for OCT is introduced, which consists of an array of inverse pyramidal structures. The use of multiple landmarks situated on four different height levels on the pyramids allow performing a 3D geometrical calibration. The calibration procedure itself is based on a parametric model of the OCT beam propagation. It is validated by experimental results and enables the reduction of systematic errors by more than one order of magnitude. In future, our results can improve OCT image reconstruction and interpretation for medical applications such as real time monitoring of surgery.

  7. 3D parameter reconstruction in hyperspectral diffuse optical tomography

    Science.gov (United States)

    Saibaba, Arvind K.; Krishnamurthy, Nishanth; Anderson, Pamela G.; Kainerstorfer, Jana M.; Sassaroli, Angelo; Miller, Eric L.; Fantini, Sergio; Kilmer, Misha E.

    2015-03-01

    The imaging of shape perturbation and chromophore concentration using Diffuse Optical Tomography (DOT) data can be mathematically described as an ill-posed and non-linear inverse problem. The reconstruction algorithm for hyperspectral data using a linearized Born model is prohibitively expensive, both in terms of computation and memory. We model the shape of the perturbation using parametric level-set approach (PaLS). We discuss novel computational strategies for reducing the computational cost based on a Krylov subspace approach for parameteric linear systems and a compression strategy for the parameter-to-observation map. We will demonstrate the validity of our approach by comparison with experiments.

  8. Detection of bladder tumors using optical coherence tomography

    Science.gov (United States)

    Pan, Yingtian; Xie, Tuqiang; Wang, Zhenguo

    2004-07-01

    This paper summarizes the engineering development of our lab for endoscopic optical coherence tomography toward the ultimate goal to image bladder micro architecture and to diagnose bladder cancers. To test the utility and potential limitations of OCT setups for bladder tumor diagnosis, we used a rat bladder cancer model to track the morphological changes following tumor growth. Image results are presented, suggesting that OCT is able to differentiate cancerous lesions from inflammatory lesions based on OCT characterizations of epithelial thickness and backscattering changes of bladder tissue.

  9. Optical coherence tomography for glucose monitoring in blood

    Science.gov (United States)

    Ullah, Hafeez; Hussain, Fayyaz; Ikram, Masroor

    2015-08-01

    In this review, we have discussed the potential application of the emerging imaging modality, i.e., optical coherence tomography (OCT) for glucose monitoring in biological tissues. OCT provides monitoring of glucose diffusion in different fibrous tissues like in sclera by determining the permeability rate with acceptable accuracy both in type 1 and in type 2 diabetes. The maximum precision of glucose measurement in Intralipid suspensions, for example, with the OCT technique yields the accuracy up to 4.4 mM for 10 % Intralipid and 2.2 mM for 3 % Intralipid.

  10. Combined two-photon microscopy and angiographic optical coherence tomography

    Science.gov (United States)

    Kim, Bumju; Wang, Tae Jun; Li, Qingyun; Nam, Jutaek; Hwang, Sekyu; Chung, Euiheon; Kim, Sungjee; Kim, Ki Hean

    2013-08-01

    A combined two-photon microscopy (TPM) and angiographic optical coherence tomography (OCT) is developed, which can provide molecular, cellular, structural, and vascular information of tissue specimens in vivo. This combined system is implemented by adding an OCT vasculature visualization method to the previous combined TPM and OCT, and then is applied to in vivo tissue imaging. Two animal models, a mouse brain cranial window model and a mouse ear cancer model, are used. Both molecular, cellular information at local regions of tissues, and structural, vascular information at relatively larger regions are visualized in the same sections. In vivo tissue microenvironments are better elucidated by the combined TPM and angiographic OCT.

  11. Primate retina imaging with polarization-sensitive optical coherence tomography

    Science.gov (United States)

    Ducros, Mathieu G.; Marsack, Jason D.; Rylander, H. Grady; Thomsen, Sharon L.; Milner, Thomas E.

    2001-12-01

    Polarization-sensitive optical coherence tomography (PSOCT) is applied to determine the depth-resolved polarization state of light backreflected from the eye. The birefringence of the retinal nerve fiber layer (RNFL) was observed and measured from PSOCT images recorded postmortem in a Rhesus monkey. An image-processing algorithm was developed to identify birefringent regions in acquired PSOCT retinal images and automatically determine the thickness of the RNFL. Values of the RNFL thickness determined from histology and PSOCT were compared. PSOCT may provide a new method to determine RNFL thickness and birefringence for glaucoma diagnostics.

  12. Spectroscopy by joint spectral and time domain optical coherence tomography

    Science.gov (United States)

    Szkulmowski, Maciej; Tamborski, Szymon; Wojtkowski, Maciej

    2015-03-01

    We present the methodology for spectroscopic examination of absorbing media being the combination of Spectral Optical Coherence Tomography and Fourier Transform Spectroscopy. The method bases on the joint Spectral and Time OCT computational scheme and simplifies data analysis procedure as compared to the mostly used windowing-based Spectroscopic OCT methods. The proposed experimental setup is self-calibrating in terms of wavelength-pixel assignment. The performance of the method in measuring absorption spectrum was checked with the use of the reflecting phantom filled with the absorbing agent (indocyanine green). The results show quantitative accordance with the controlled exact results provided by the reference method.

  13. Frequency comb swept lasers for optical coherence tomography

    OpenAIRE

    Tsai, Tsung-Han; Zhou, Chao; Desmond C Adler; Fujimoto, James G.

    2010-01-01

    We demonstrate a frequency comb (FC) swept laser and a frequency comb Fourier domain mode locked (FC-FDML) laser for applications in optical coherence tomography (OCT). The fiber-based FC swept lasers operate at a sweep rate of 1kHz and 120kHz, respectively over a 135nm tuning range centered at 1310nm with average output powers of 50mW. A 25GHz free spectral range frequency comb filter in the cavity of swept lasers causes the lasers to generate a series of well defined frequency steps. The na...

  14. Megahertz streak-mode Fourier domain optical coherence tomography

    OpenAIRE

    Wang, Rui; Yun, Julie X; Yuan, Xiaocong; Goodwin, Richard; Markwald, Roger R.; Gao, Bruce Z

    2011-01-01

    Here we present an ultrahigh-speed Fourier-domain optical coherence tomography (OCT) that records the OCT spectrum in streak mode with a high-speed area scan camera, which allows higher OCT imaging speed than can be achieved with a line-scan camera. Unlike parallel OCT techniques that also use area scan cameras, the conventional single-mode fiber-based point-scanning mechanism is retained to provide a confocal gate that rejects multiply scattered photons from the sample. When using a 1000 Hz ...

  15. Clinical analysis of buried optic nerve drusen with optical coherence tomography examination

    Directory of Open Access Journals (Sweden)

    Juan Liu

    2013-11-01

    Full Text Available AIM: To explore the specific image of buried optic nerve drusen during optical coherence tomography(OCTexamination. METHODS: A retrospective study was made on 6 patients with buried optic nerve drusen(6 eyesdiagnosed by fundus fluorescein angiography(FFAand B scan examination. RESULTS: The high fluorescence area of optic disc showed on the FFA image of all 6 patients imaged with the spectral OCT revealed cluster of calcium deposits. These deposits demonstrated specific wide bars with high reflectivity casting shadows underneath and had lacunae appearance. CONCLUSION: Buried optic nerve drusen showed specific image in the spectral OCT examination. Thus, spectral OCT can serve as an assistant examination method with relatively prominent features for diagnosing buried optic nerve drusen. It can help to raise the detection rate of buried optic nerve drusen.

  16. High-speed optical coherence tomography using fiberoptic acousto-optic phase modulation.

    Science.gov (United States)

    Xie, Tuqiang; Wang, Zhenguo; Pan, Yingtian

    2003-12-01

    We report a new rapid-scanning optical delay device suitable for high-speed optical coherence tomography (OCT) in which an acousto-optic modulator (AOM) is used to independently modulate the Doppler frequency shift of the reference light beam for optical heterodyne detection. Experimental results show that the fluctuation of the measured Doppler frequency shift is less than +/-0.2% over 95% duty cycle of OCT imaging, thus allowing for enhanced signal-to-noise ratio of optical heterodyne detection. The increased Doppler frequency shift by AOM also permits complete envelop demodulation without the compromise of reducing axial resolution; if used with a resonant rapid-scanning optical delay, it will permit high-performance real-time OCT imaging. Potentially, this new rapid-scanning optical delay device will improve the performance of high-speed Doppler OCT techniques. PMID:19471447

  17. Determination of optical scattering properties of highly-scattering media in optical coherence tomography images

    DEFF Research Database (Denmark)

    Levitz, D.; Thrane, L.; Frosz, Michael Henoch; Andersen, Peter E.; Andersen, C.B.; Andersson-Engels, S.; Valanciunaite, J.; Swartling, J.; Hansen, P.R.

    2004-01-01

    We developed a new algorithm that fits optical coherence tomography (OCT) signals as a function of depth to a general theoretical OCT model which takes into account multiple scattering effects. With use of this algorithm, it was possible to extract both the scattering coefficient and anisotropy...

  18. Assessing carotid atherosclerosis by fiber-optic multispectral photoacoustic tomography

    Science.gov (United States)

    Hui, Jie; Li, Rui; Wang, Pu; Phillips, Evan; Bruning, Rebecca; Liao, Chien-Sheng; Sturek, Michael; Goergen, Craig J.; Cheng, Ji-Xin

    2015-03-01

    Atherosclerotic plaque at the carotid bifurcation is the underlying cause of the majority of ischemic strokes. Noninvasive imaging and quantification of the compositional changes preceding gross anatomic changes within the arterial wall is essential for diagnosis of disease. Current imaging modalities such as duplex ultrasound, computed tomography, positron emission tomography are limited by the lack of compositional contrast and the detection of flow-limiting lesions. Although high-resolution magnetic resonance imaging has been developed to characterize atherosclerotic plaque composition, its accessibility for wide clinical use is limited. Here, we demonstrate a fiber-based multispectral photoacoustic tomography system for excitation of lipids and external acoustic detection of the generated ultrasound. Using sequential ultrasound imaging of ex vivo preparations we achieved ~2 cm imaging depth and chemical selectivity for assessment of human arterial plaques. A multivariate curve resolution alternating least squares analysis method was applied to resolve the major chemical components, including intravascular lipid, intramuscular fat, and blood. These results show the promise of detecting carotid plaque in vivo through esophageal fiber-optic excitation of lipids and external acoustic detection of the generated ultrasound. This imaging system has great potential for serving as a point-ofcare device for early diagnosis of carotid artery disease in the clinic.

  19. Imaging of oral pathological tissue using optical coherence tomography

    Science.gov (United States)

    Canjau, Silvana; Todea, Carmen; Sinescu, Cosmin; Duma, Virgil-Florin; Topala, Florin I.; Podoleanu, Adrian G.

    2014-01-01

    Oral squamous cell carcinoma (OSCC) constitutes 90% of oral cancer. Early detection is a cornerstone to improve survival. Interaction of light with tissues may highlight changes in tissue structure and metabolism. We propose optical coherence tomography (OCT), as a non-invasive diagnosis method, being a new high-resolution optical technique that permits tri-dimensional (3-D), real-time imaging of near surface abnormalities in complex tissues. In this study half of the excisional biopsy was directed to the pathologist and the other half was assigned for OCT investigation. Histopathology validated the results. Areas of OSCC of the buccal mucosa were identified in the OCT images. The elements obserced included extensive epithelial down-growth, the disruption of the basement membrane, with areas of erosion, an epithelial layer that was highly variable in thickness and invasion into the sub-epithelial layers. Therefore, OCT appears to be a highly promising imaging modality.

  20. Dynamic image reconstruction in time-resolved diffuse optical tomography

    Science.gov (United States)

    Powell, Samuel; Cooper, Robert J.; Hebden, Jeremy C.; Arridge, Simon R.

    2015-03-01

    Optical imaging techniques provide a means of monitoring haemodynamics and tissue oxygenation by virtue of the differing absorption spectra of relevant endogenous chromophores. Whilst time-domain diffuse optical tomography offers sufficient sensitivity to produce full three dimensional images of such properties through the entire infant brain, standard approaches to the imaging protocol and reconstruction methods limit the temporal resolution which can be achieved without an unacceptable degradation in the image quality. In this work we employ spatio-temporal regularisation by means of a variational form Kalman filter to achieve significantly improved temporal resolution whilst maintaining image quality. We demonstrate this approach in a dynamic phantom study where we successfully track moving absorbing and scattering targets using the MONSTIR II instrument developed at University College London.

  1. Non-diffusing photochromic gel for optical computed tomography phantoms

    International Nuclear Information System (INIS)

    This study examines photochromic response in radiation sensitive hydrogels. Genipin, crosslinked, gelatin gel can support high resolution images because the chromophores do not diffuse. A low power, 633 nm He-Ne laser was used to write lines into the gels by a photobleaching reaction. Optical cone-beam computed tomography (CBCT) scans mapped the high resolution images in 3D with 0.25 mm voxel resolution. A straight line was written into a deformed gel and then readout in its relaxed, initial shape. The curved, photo-bleached line demonstrated deformable 3D dosimetry is possible with this system to the balloon edge. High resolution, photochromic images provide key information for characterizing optical CT scanners and 3D dosimeters. Many, ionizing radiation, dosimeter materials demonstrate either a photochromic or photothermal response, allowing this approach to be widely used in quantitative 3D scanning.

  2. Full-field optical coherence tomography for tissue imaging

    Science.gov (United States)

    Dubois, A.

    2015-06-01

    Full-field optical coherence tomography (FF-OCT) is a biomedical imaging technique based on white-light interference microscopy. FF-OCT produces tomographic images by arithmetic combination of interferometric images acquired with an area camera and by illuminating the whole field to be imaged with low-coherence light. The major interest for FFOCT lies in its high imaging resolution in both transverse and axial directions using a simple and robust experimental arrangement. This paper provides an overview of the principle of FF-OCT. The system characteristics are reported in details, including the detection sensitivity and spatial resolution. Several of the challenges, advantages and drawbacks of the technique are discussed and compared with other optical imaging techniques such as conventional OCT and confocal microscopy. Images of normal and diseased human breast tissue are presented to illustrate the potential of FF-OCT for cellular-level anatomopathological examinations without sample processing.

  3. Non-diffusing photochromic gel for optical computed tomography phantoms

    Science.gov (United States)

    Jordan, K.

    2013-06-01

    This study examines photochromic response in radiation sensitive hydrogels. Genipin, crosslinked, gelatin gel can support high resolution images because the chromophores do not diffuse. A low power, 633 nm He-Ne laser was used to write lines into the gels by a photobleaching reaction. Optical cone-beam computed tomography (CBCT) scans mapped the high resolution images in 3D with 0.25 mm voxel resolution. A straight line was written into a deformed gel and then readout in its relaxed, initial shape. The curved, photo-bleached line demonstrated deformable 3D dosimetry is possible with this system to the balloon edge. High resolution, photochromic images provide key information for characterizing optical CT scanners and 3D dosimeters. Many, ionizing radiation, dosimeter materials demonstrate either a photochromic or photothermal response, allowing this approach to be widely used in quantitative 3D scanning.

  4. Combined Endoscopic Optical Coherence Tomography and Laser Induced Fluorescence

    Science.gov (United States)

    Barton, Jennifer K.; Tumlinson, Alexandre R.; Utzinger, Urs

    Optical coherence tomography (OCT) and laser-induced fluorescence (LIF) are promising modalities for tissue characterization in human patients and animal models. OCT detects coherently backscattered light, whereas LIF detects fluorescence emission of endogenous biochemicals, such as reduced nicotinamide adenine dinucleotide (NADH), flavin adenine dinucleotide (FAD), collagen, and fluorescent proteins, or exogenous substances such as cyanine dyes. Given the complementary mechanisms of contrast for OCT and LIF, the combination of the two modalities could potentially provide more sensitive and specific detection of disease than either modality alone. Sample probes for both OCT and LIF can be implemented using small diameter optical fibers, suggesting a particular synergy for endoscopic applications. In this chapter, the mechanisms of contrast and diagnostic capability for both OCT and LIF are briefly examined. Evidence of complementary capability is described. Example published combined OCT-LIF systems are reviewed, one successful commercial instrument is discussed, and example applications are provided.

  5. Sound field reconstruction using acousto-optic tomography

    DEFF Research Database (Denmark)

    Torras Rosell, Antoni; Barrera Figueroa, Salvador

    2012-01-01

    When sound propagates through a medium, it results in pressure fluctuations that change the instantaneous density of the medium. Under such circumstances, the refractive index that characterizes the propagation of light is not constant, but influenced by the acoustic field. This kind of interaction is known as the acousto-optic effect. The formulation of this physical phenomenon into a mathematical problem can be described in terms of the Radon transform, which makes it possible to reconstruct an arbitrary sound field using tomography. The present work derives the fundamental equations governing the acousto-optic effect in air, and demonstrates that it can be measured with a laser Doppler vibrometer in the audible frequency range. The tomographic reconstruction is tested by means of computer simulations and measurements. The main features observed in the simulations are also recognized in the experimental results. The effectiveness of the tomographic reconstruction is further confirmed with representations ofthe very same sound field measured with a traditional microphone array.

  6. Optical coherence tomography a clinical and technical update

    CERN Document Server

    Cunha-Vaz, José

    2012-01-01

    Optical Coherence Tomography represents the ultimate noninvasive  ocular imaging technique although being in the field for over two-decades. This book encompasses both medical and technical developments and recent achievements. Here, the authors cover the field of application from the anterior to the posterior ocular segments (Part I) and present a comprehensive review on the development of OCT. Important developments towards  clinical applications are covered in Part II, ranging from the adaptive optics to the integration on a slit-lamp, and passing through new structural  and functional information extraction from OCT data. The book is intended to be informative, coherent and comprehensive for both the medical and technical communities and aims at easing the communication between the two fields and bridging the gap between the two scientific communities.

  7. Monte Carlo Simulations of Arterial Imaging with Optical Coherence Tomography

    Energy Technology Data Exchange (ETDEWEB)

    Amendt, P.; Estabrook, K.; Everett, M.; London, R.A.; Maitland, D.; Zimmerman, G.; Colston, B.; da Silva, L.; Sathyam, U.

    2000-02-01

    The laser-tissue interaction code LATIS [London et al., Appl. Optics 36, 9068 ( 1998)] is used to analyze photon scattering histories representative of optical coherence tomography (OCT) experiment performed at Lawrence Livermore National Laboratory. Monte Carlo photonics with Henyey-Greenstein anisotropic scattering is implemented and used to simulate signal discrimination of intravascular structure. An analytic model is developed and used to obtain a scaling law relation for optimization of the OCT signal and to validate Monte Carlo photonics. The appropriateness of the Henyey-Greenstein phase function is studied by direct comparison with more detailed Mie scattering theory using an ensemble of spherical dielectric scatterers. Modest differences are found between the two prescriptions for describing photon angular scattering in tissue. In particular, the Mie scattering phase functions provide less overall reflectance signal but more signal contrast compared to the Henyey-Greenstein formulation.

  8. Thickness estimation with optical coherence tomography and statistical decision theory

    Science.gov (United States)

    Huang, Jinxin; Yao, Jianing; Cirucci, Nick; Ivanov, Trevor; Rolland, Jannick P.

    2015-10-01

    Thickness estimation, which has a broad range of applications, plays an important role in the field of optical metrology. In this study, we investigate a new approach—combining optical coherence tomography (OCT) and statistical decision theory—for thickness estimation. We first discussed and quantified the intensity noise of three commonly used broadband sources, a super-continuum source, a super-luminescent diode (SLD), and a swept source. Furthermore, a maximum-likelihood (ML) estimator was implemented to interpret the OCT raw data. Based on the mathematical model and the ML estimator, simulations were set up to investigate the impact of different broadband sources in OCT for a thickness estimation task. We then validated the theoretical framework with physical phantoms. Results demonstrate unbiased nanometer-class thickness estimates with the ML estimator. The framework can be potentially used for film and surface shape metrology.

  9. Performance of latex balloons for optical computed tomography

    International Nuclear Information System (INIS)

    Latex balloons filled with radiation sensitive hydrogels were evaluated as 3D dosimeters with optical computed tomography (CT) readout. Custom balloons, with less than 10 cm diameters, were made from latex sheets. Commercial, 13 cm diameter, clear balloons were investigated for larger volumes. Ferrous-xylenol orange and genipin gelatin gels selected for 1 and 30 Gy experiments, respectively. The thin stretched latex membrane allowed optical imaging to within 1 mm of the interior balloon edge. Reconstructed dose distributions demonstrated valid measurements to within 2 mm of the balloon surface. The rubber membrane provides a hybrid approach to deforming hydrogels. Uniform irradiation of a deformed gel resulted in a uniform dose being measured when scanned in the relaxed, initial balloon shape. The 13 cm diameter balloons were also effective and inexpensive vessels for hydrogels due to their high clarity, thinness and mechanical strength. Latex balloons represent an inexpensive method to obtain useful information from nearly the entire dosimeter volume.

  10. Limited-angle holographic tomography with optically controlled projection generation

    Science.gov (United States)

    Ku?, A.; Krauze, W.; Kujawi?ska, M.

    2015-03-01

    In the paper we demonstrate a holographic tomography system with limited angle of projections, realized by optical- only, diffraction-based beam steering. The system created for this purpose is a Mach-Zehnder interferometer modified to serve as a digital holographic microscope with high Numerical Aperture illumination module and a Spatial Light Modulator. Such solution is fast and robust. Apart from providing an elegant solution to the viewing angle shifting, it also adds new capabilities of the holographic microscope system. SLM, being an active optical element, allows wavefront correction in order to improve measurement accuracy. Integrated phase data captured with different scenarios within a highly limited angular range are processed by a new tomographic reconstruction algorithm based on the compressed sensing technique: total variation minimization, which is applied to non-piecewise constant samples. Finally, the accuracy of full measurement and processing path proposed is tested for a calibrated 3D microobject.

  11. Retinal oximetry using ultrahigh-resolution optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Ye Y

    2012-12-01

    Full Text Available Yufeng Ye,1,2 Hong Jiang,2,3 Meixiao Shen,4 Byron L Lam,2 Delia Cabrera DeBuc,2 Lili Ge,2,4 Mitra Sehi,2 Jianhua Wang21Hangzhou First People’s Hospital, Hangzhou, China; 2Bascom Palmer Eye Institute, 3Neurology, University of Miami, Miami, FL, USA; 4School of Ophthalmology and Optometry, Wenzhou Medical College, Wenzhou, Zhejiang, ChinaBackground: The purpose of this study was to investigate the repeatability of retinal oximetry using slit-lamp adapted ultrahigh-resolution optical coherence tomography (SL-UHR-OCT.Methods: SL-UHR-OCT was developed and fringe patterns were obtained for a major retinal artery and a major retinal vein. A-scans at the central wavelengths of 805 nm and 855 nm were analyzed for calculating optical density ratios (ODRs, from which the percentage oxygen saturation was calculated. Measurements were made on two occasions for each person. Repeatability and coefficients of repeatability were calculated.Results: The mean ODRs of the artery were 0.79 ± 0.86 and 0.88 ± 0.97 in sessions 1 and 2, respectively. The mean ODRs of the vein were ?0.08 ± 0.69 and 0.14 ± 0.77 between the two sessions, and were significantly lower than that of the artery (P < 0.05. The coefficients of repeatability were 1.44 and 1.81 for the artery and vein, respectively. The mean oxygen saturation of the major retinal artery was 94% ± 45% and 98% ± 51% in sessions 1 and 2, respectively, and the mean oxygen saturation of the major retinal vein was 48% ± 36% and 60% ± 40% between sessions.Conclusion: Optical coherence tomographic oximetry for evaluating retinal oxygen saturation was subject to variation, although the averaged measurements in repeated sessions were matched. Further work on reducing variation will be needed.Keywords: ultrahigh-resolution optical coherence tomography, oximetry

  12. Macular optical coherence tomography findings following blunt ocular trauma

    Directory of Open Access Journals (Sweden)

    Oladiwura D

    2014-05-01

    Full Text Available Dilys Oladiwura,1 Lik Thai Lim,1 Elliott Yann Ah-kee,2 James Angus Scott31Tennent Institute of Ophthalmology, Gartnavel General Hospital (NHS Greater Glasgow and Clyde Trust, Glasgow, UK; 2University of Glasgow, Glasgow, UK; 3Falkirk Community Hospital (Forth Valley NHS Trust, Falkirk, UKAbstract: This case report describes the optical coherence tomography (OCT results of Berlin’s edema in a male subject following blunt ocular trauma from a soccer ball. A 27-year-old male presented with blurred vision in his left eye following blunt trauma. On admission, he underwent a complete eye examination and an OCT of the macula. Fundoscopy revealed commotio retinae, observed as an abnormal cream-colored discoloration of the fovea. The OCT showed outer photoreceptor segment disruption, retinal pigment epithelium inter-digitation, and intra-retinal edema of the outer nuclear layer. Following initial management, a repeat OCT after 3 months showed near complete resolution. OCT can be a useful adjunct for monitoring the progress of Berlin’s edema secondary to blunt ocular trauma because Berlin’s edema may present similarly clinically to other ocular trauma, but can affect different layers of the retina depending on the type of injury to the eye.Keywords: Berlin’s edema, commotio retinae, optical coherence tomography, OCT, ocular trauma

  13. Optical spectroscopy and Doppler tomography of Cygnus X-2

    CERN Document Server

    Elebert, P; Torres, M A P; García, M R

    2009-01-01

    We present phase resolved optical spectroscopy and Doppler tomography of V1341 Cygni, the optical counterpart to the neutron star low mass X-ray binary Cygnus X-2. We derive a radial velocity curve for the secondary star, finding a projected radial velocity semi-amplitude of K2 = 79 +/- 3 km/s, leading to a mass function of 0.51 +/- 0.06 Msun, ~30% lower than the previous estimate. We tentatively attribute the lower value of K2 (compared to that obtained by other authors) to variations in the X-ray irradiation of the secondary star at different epochs of observations. The limited phase coverage and/or longer timebase of previous observations may also contribute to the difference in K2. Our value for the mass function implies a primary mass of 1.5 +/- 0.3 Msun, somewhat lower than previous dynamical estimates, but consistent with the value found by analysis of type-I X-ray bursts from this system. Our Doppler tomography of the broad He II 4686 line reveals that most of the emission from this line is produced o...

  14. Cell death monitoring using quantitative optical coherence tomography methods

    Science.gov (United States)

    Farhat, Golnaz; Yang, Victor X. D.; Kolios, Michael C.; Czarnota, Gregory J.

    2011-03-01

    Cell death is characterized by a series of predictable morphological changes, which modify the light scattering properties of cells. We present a multi-parametric approach to detecting changes in subcellular morphology related to cell death using optical coherence tomography (OCT). Optical coherence tomography data were acquired from acute myeloid leukemia (AML) cells undergoing apoptosis over a period of 48 hours. Integrated backscatter (IB) and spectral slope (SS) were computed from OCT backscatter spectra and statistical parameters were extracted from a generalized gamma (GG) distribution fit to OCT signal intensity histograms. The IB increased by 2-fold over 48 hours with significant increases observed as early as 4 hours. The SS increased in steepness by 2.5-fold with significant changes at 12 hours, while the GG parameters were sensitive to apoptotic changes at 24 to 48 hours. Histology slides indicated nuclear condensation and fragmentation at 24 hours, suggesting the late scattering changes could be related to nuclear structure. A second series of measurements from AML cells treated with cisplatin, colchicine or ionizing radiation suggested that the GG parameters could potentially differentiate between modes of cell death. Distinct cellular morphology was observed in histology slides obtained from cells treated under each condition.

  15. Optical coherence tomography for retinal imaging in multiple sclerosis

    Directory of Open Access Journals (Sweden)

    Zimmermann H

    2014-12-01

    Full Text Available Hanna Zimmermann,1 Timm Oberwahrenbrock,1 Alexander U Brandt,1 Friedemann Paul,1–3 Jan Dörr1,2 1NeuroCure Clinical Research Center, 2Clinical and Experimental Multiple Sclerosis Research Center, 3Department of Neurology, Charité – Universitätsmedizin Berlin, Berlin, Germany Abstract: Visual disturbances caused by inflammatory and demyelinating processes of the visual system, mainly in the optic nerve, are a common symptom in multiple sclerosis (MS. Optical coherence tomography (OCT is a tool that is increasingly used for quantifying retinal damage in MS and other neurologic diseases. Based on spectral interferometry, it uses low-coherent infrared light to generate high-resolution spatial images of the retina. The retinal nerve fiber layer (RNFL consists of unmyelinated axons that form the optic nerve, and thus represents a part of the central nervous system. OCT allows for noninvasive measurements of RNFL thickness in micrometer resolution. With the help of OCT, researchers have managed to demonstrate that eyes of MS patients show distinct RNFL thinning after an event of acute optic neuritis in MS, and even subclinical damage in eyes with no previous optic neuritis. OCT is also a useful tool in terms of providing a differential diagnosis of MS toward, for example, neuromyelitis optica, a disease that usually shows stronger retinal thinning, or Susac syndrome, which is characterized by distinct patchy thinning of the inner retinal layers. RNFL thinning is associated with magnetic resonance imaging-derived measurements of the brain, such as whole-brain atrophy, gray and white matter atrophy, and optic radiation damage. These features suggest that OCT-derived retinal measurements are a complement for measuring central nervous system neurodegeneration in the context of clinical trials – for example, with neuroprotective substances. Keywords: visual function, multiple sclerosis, optic neuritis, retinal nerve fiber layer, neuromyelitis optica, Susac syndrome

  16. Large-scale optical diffraction tomography for inspection of optical plastic lenses

    CERN Document Server

    Kim, Kyoohyun; Park, YongKeun

    2015-01-01

    Herein is presented an optical diffraction tomography (ODT) technique for measuring 3-D refractive index (RI) maps of optical plastic lenses. A Mach-Zehnder interferometer was used to measure multiple complex optical fields of a plastic lens immersed in RI matching oil, at various rotational orientations. From this, ODT was used to reconstruct a 3-D RI distribution of the plastic lens with unprecedented RI sensitivity (dn = 4.21 x 10^-5) and high resolution (12.8 um). As a demonstration, 3-D RI distributions of a 2-mm-diameter borosilicate sphere and a 5-mm-diameter plastic lens

  17. Optical coherence tomography demonstrating macular retinal nerve fiber thinning in advanced optic disc drusen

    OpenAIRE

    Hassan, Ali; Gouws, Pieter

    2014-01-01

    Optic disc drusen (ODD) are extracellular proteinaceous excrescences in the optic nerve head. They enlarge over time and can cause damage to nerve fibers with resulting loss of visual field. The authors report a case of advanced ODD in which macular optical coherence tomography demonstrated retinal nerve fiber thinning. A single case report of a 42-year-old woman with known ODD presented to the eye clinic with worsening field of vision which was impacting on her daily life. The patient was su...

  18. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    Science.gov (United States)

    Olivier, Scot S. (Livermore, CA); Werner, John S. (Davis, CA); Zawadzki, Robert J. (Sacramento, CA); Laut, Sophie P. (Pasedena, CA); Jones, Steven M. (Livermore, CA)

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  19. Developing High-Density Diffuse Optical Tomography for Neuroimaging

    Science.gov (United States)

    White, Brian Richard

    Clinicians who care for brain-injured patients and premature infants desire a bedside monitor of brain function. A decade ago, there was hope that optical imaging would be able to fill this role, as it combined fMRI's ability to construct cortical maps with EEG's portable, cap-based systems. However, early optical systems had poor imaging performance, and the momentum for the technique slowed. In our lab, we develop diffuse optical tomography (DOT), which is a more advanced method of performing optical imaging. My research has been to pioneer the in vivo use of DOT for advanced neuroimaging by (1) quantifying the advantages of DOT through both in silico simulation and in vivo performance metrics, (2) restoring confidence in the technique with the first retinotopic mapping of the visual cortex (a benchmark for fMRI and PET), and (3) creating concepts and methods for the clinical translation of DOT. Hospitalized patients are unable to perform complicated neurological tasks, which has motivated us to develop the first DOT methods for resting-state brain mapping with functional connectivity. Finally, in collaboration with neonatologists, I have extended these methods with proof-of-principle imaging of brain-injured premature infants. This work establishes DOT's improvements in imaging performance and readies it for multiple clinical and research roles.

  20. Optical coherence tomography findings and retinal changes after vitrectomy for optic disc pit maculopathy

    Directory of Open Access Journals (Sweden)

    Gaurav Sanghi

    2014-01-01

    Full Text Available Purpose : To study the optical coherence tomography (OCT patterns in optic disc pit maculopathy and retinal changes after vitreous surgery. Materials and Methods : Retrospective review of consecutive cases with optic disc pit maculopathy seen at two tertiary eye institutes from January 2005 to June 2009. Results : Twenty-four eyes of 23 patients are included. The presenting visual acuity ranged from 20/400 to 20/20 (median:20/80. The median age at presentation was 24 years (range, 6-57 years. Optical coherence tomography demonstrated a combination of retinoschisis and outer layer detachment (OLD in 19 (79.17% eyes, OLD only in 3 (12.5% eyes and retinoschisis only in 2 (8.33% eyes. An obvious communication (outer layer hole between the schisis and OLD was seen in 14 (73.68% of the 19 eyes with both features. Of the 21 eyes with retinoschisis, schisis was present in multiple layers in 15 (71.43% and single layer in 6 (28.57% eyes. Eleven eyes underwent pars plana vitrectomy including creation of posterior vitreous detachment (PVD, fluid-air exchange, low intensity laser photocoagulation at the temporal edge of the optic disc pit and non-expansile perfluoropropane gas (14% injection. Five (45.45% of 11 eyes undergoing vitrectomy had complete resolution and 4 (36.36% eyes had partial resolution of maculopathy. Visual acuity improved in 8 (72.72% of 11 eyes. Conclusion : Optical coherence tomography demonstrates multiple layer schisis and outer layer detachment as main features of optic disc pit maculopathy. Vitrectomy with PVD induction, laser photocoagulation and gas tamponade results in anatomical and visual improvement in most cases with optic disc pit maculopathy.

  1. Macular spectral domain optical coherence tomography findings in Tanzanian endemic optic neuropathy.

    Science.gov (United States)

    Kisimbi, John; Shalchi, Zaid; Mahroo, Omar A; Mhina, Celina; Sanyiwa, Anna J; Mabey, Denise; Mohamed, Moin; Plant, Gordon T

    2013-11-01

    Bilateral optic neuropathy in Dar es Salaam is now considered endemic and is estimated to affect 0.3-2.4% of young adults. The condition is characterized by a subacute bilateral loss of central vision of unknown aetiology. Findings of spectral domain optical coherence tomography have not previously been reported for these patients. All patients diagnosed with endemic optic neuropathy over a 2-year period at the Muhimbili National Hospital underwent spectral domain optical coherence tomography macular imaging. Scans were graded qualitatively for severity of retinal nerve fibre layer loss as well as the presence of microcystic macular changes, which have not previously been described in this condition. Of the 128 patients included (54.7% male; median age 20 years), severe retinal nerve fibre layer loss was found in 185 eyes (74.0%). There was full concordance in retinal nerve fibre layer thickness between the two eyes in 113 (91.1%) patients. Microcystic macular spaces were found in 16 (12.5%) patients and were bilateral in nine (7.0%) individuals. These changes were typically more prominent in the nasal than the temporal macula, predominantly involving the inner nuclear layer, and often occurred in an annular configuration that was evident on en face infra-red imaging, though not discernible on colour fundus photography or clinically. All patients with microcystic macular changes had severe thinning of the retinal nerve fibre layer (P = 0.02). Four patients in whom cystic spaces were demonstrated had sequential scans, and there was no detectable alteration in the configuration of these changes over a period of up to 16 months. This is the first study to document optical coherence tomography findings in endemic optic neuropathy. We have observed symmetrical severe loss of the caeco-central projection (papillomacular bundle) with otherwise well-preserved macular architecture. Also, we have observed microcystic retinal changes in a significant proportion of patients, which were associated with severe retinal nerve fibre layer loss. Similar changes have recently been reported from optical coherence tomography images of patients with multiple sclerosis, relapsing isolated optic neuritis, dominant optic atrophy, Leber's hereditary optic neuropathy and a patient with a chronic compressive optic neuropathy, supporting the hypothesis that this may be a non-specific phenomenon secondary to ganglion cell death. The correspondence of the changes to an annulus discernible on infra-red en face imaging, but not using other conventional retinal imaging techniques highlights the potential usefulness of this modality. PMID:24018312

  2. Corrections to linear methods for diffuse optical tomography using approximation error modelling

    OpenAIRE

    2010-01-01

    Linear reconstruction methods in diffuse optical tomography have been found to produce reasonable good images in cases in which the variation in optical properties within the medium is relatively small and a reference measurement with known background optical properties is available. In this paper we examine the correction of errors when using a first order Born approximation with an infinite space Green’s function model as the basis for linear reconstruction in diffuse optical tomography, wh...

  3. In-situ imaging of articular cartilage of the first carpometacarpal joint using co-registered optical coherence tomography and computed tomography

    Science.gov (United States)

    Cernohorsky, Paul; de Bruin, Daniel M.; van Herk, Marcel; Bras, Johannes; Faber, Dirk J.; Strackee, Simon D.; van Leeuwen, Ton G.

    2012-06-01

    Conventional imaging modalities are unable to depict the early degeneration of articular cartilage in osteoarthritis, especially in small joints. Optical coherence tomography has previously been used successfully in high-resolution imaging of cartilage tissue. This pilot cadaver study demonstrates the use of intra-articular optical coherence tomography in imaging of articular cartilage of the first carpometacarpal joint, producing high resolution images of the articular surface in which cartilage thickness and surface characteristics were assessed. Findings on optical coherence tomography were confirmed with histology. Furthermore, co-registration of optical coherence tomography and computed tomography was used to accurately determine the scanned trajectory and reconstruct a true-scale image overlay.

  4. Cone beam optical computed tomography-based gel dosimetry

    Science.gov (United States)

    Olding, Timothy Russell

    The complex dose distributions delivered by modern, conformal radiation therapy techniques present a considerable challenge in dose verification. Traditional measurement tools are difficult and laborious to use, since complete verification requires that the doses be determined in three dimensions (3D). The difficulty is further complicated by a required target accuracy of +/- 5% for the dose delivery. Gel dosimetry is an attractive option for realizing a tissue-equivalent, 3D dose verification tool with high resolution readout capabilities. However, much important work remains to be completed prior to its acceptance in the clinic. The careful development of easily accessible, fast optical readout tools such as cone beam optical computed tomography (CT) in combination with stable and reliable low-toxicity gel dosimeters is one key step in this process. In this thesis, the performance capabilities and limitations of the two main classes of cone beam optical CT-based absorbing and scattering gel dosimetry are characterized, and their measurement improved through careful matching of dosimeter and scanner performance. These systems are then applied to the evaluation of clinically relevant complex dose distributions. Three-dimensional quality assurance assessments of complex treatment plan dose distributions are shown to be feasible using an optically absorbing Fricke-xylenol-orange-gelatin-based gel dosimeter. Better than 95% voxel agreement is achieved between the plan and the delivery, using 3% dose difference and 3 mm spatial distance-to-agreement gamma function comparison criteria. Small field dose delivery evaluations are demonstrated to be viable using an optically scattering N-isopropylacrylamide (NIPAM)-based polymer gel, with the same comparison criteria. Full treatment process quality assurance is also possible using a NIPAM dosimeter in-phantom, but is limited in its accuracy due to the inherent difficulty of managing the effects of stray light pertubation in the optical attenuation-to-dose calibration.

  5. Monitoring changes of optical attenuation coefficients of acupuncture points during laser acupuncture by optical coherence tomography

    Science.gov (United States)

    Huang, Yimei; Yang, Hongqin; Wang, Yuhua; Zheng, Liqin; Xie, Shusen

    2010-11-01

    The physical properties of acupuncture point were important to discover the mechanism of acupuncture meridian. In this paper, we used an optical coherence tomography to monitor in vivo the changes of optical attenuation coefficients of Hegu acupuncture point and non-acupuncture point during laser irradiation on Yangxi acupuncture point. The optical attenuation coefficients of Hegu acupuncture point and non-acupuncture point were obtained by fitting the raw data according to the Beer-Lambert's law. The experimental results showed that the optical attenuation coefficient of Hegu acupuncture point decreased during the laser acupuncture, in contrast to a barely changed result in that of non-acupuncture point. The significant change of optical attenuation coefficient of Hegu acupuncture point indicated that there was a correlation between Hegu and Yangxi acupuncture points to some extent.

  6. Simultaneous multiple-depths en-face optical coherence tomography using multiple signal excitation of acousto-optic deflectors.

    Science.gov (United States)

    Zurauskas, Mantas; Rogers, John; Podoleanu, Adrian Gh

    2013-01-28

    We present a novel low-coherence interferometer configuration, equipped with acousto-optic deflectors that can be used to simultaneously acquire up to eight time domain optical coherence tomography en-face images. The capabilities of the configuration are evaluated in terms of depth resolution, signal to noise ratio and crosstalk. Then the configuration is employed to demonstrate simultaneous en-face optical coherence tomography imaging at five different depths in a specimen of armadillidium vulgare. PMID:23389175

  7. Optical diffraction tomography in an inhomogeneous background medium

    International Nuclear Information System (INIS)

    The filtered back-propagation algorithm (FBP algorithm) is a computationally fast and efficient inversion algorithm for reconstructing the 3D index of refraction distribution of weak scattering samples in free space from scattered field data collected in a set of coherent optical scattering experiments. This algorithm is readily derived using classical Fourier analysis applied to the Born or Rytov weak scattering models appropriate to scatterers embedded in a non-attenuating uniform background. In this paper, the inverse scattering problem for optical diffraction tomography (ODT) is formulated using the so-called distorted wave Born and Rytov approximations and a generalized version of the FBP algorithm is derived that applies to weakly scattering samples that are embedded in realistic, multiple scattering ODT experimental configurations. The new algorithms are based on the generalized linear inverse of the linear transformation relating the scattered field data to the complex index of refraction distribution of the scattering samples and are in the form of a superposition of filtered data, computationally back propagated into the ODT experimental configuration. The paper includes a computer simulation comparing the generalized Born and Rytov based FBP inversion algorithms as well as reconstructions generated using the generalized Born based FBP algorithm of a step index optical fiber from experimental ODT data

  8. Compact piezoelectric transducer fiber scanning probe for optical coherence tomography.

    Science.gov (United States)

    Zhang, Ning; Tsai, Tsung-Han; Ahsen, Osman O; Liang, Kaicheng; Lee, Hsiang-Chieh; Xue, Ping; Li, Xingde; Fujimoto, James G

    2014-01-15

    We developed a compact, optical fiber scanning piezoelectric transducer (PZT) probe for endoscopic and minimally invasive optical coherence tomography (OCT). Compared with previous forward-mount fiber designs, we present a reverse-mount design that achieves a shorter rigid length. The fiber was mounted at the proximal end of a quadruple PZT tube and scanned inside the hollow PZT tube to reduce the probe length. The fiber resonant frequency was 338 Hz using a 17-mm-long fiber. A 0.9 mm fiber deflection was achieved with a driving amplitude of 35 V. Using a GRIN lens-based optical design with a 1.3× magnification, a ?6 ?m spot was scanned over a 1.2 mm diameter field. The probe was encased in a metal hypodermic tube with a ?25 mm rigid length and covered with a 3.2 mm outer diameter (OD) plastic sheath. Imaging was performed with a swept source OCT system based on a Fourier domain modelocked laser (FDML) light source at a 240 kHz axial scan rate and 8 ?m axial resolution (in air). En face OCT imaging of skin in vivo and human colon ex vivo was demonstrated. PMID:24562102

  9. Fluorescence diffuse optical tomography: a wavelet-based model reduction

    Science.gov (United States)

    Frassati, Anne; DaSilva, Anabela; Dinten, Jean-Marc; Georges, Didier

    2007-07-01

    Fluorescence diffuse optical tomography is becoming a powerful tool for the investigation of molecular events in small animal studies for new therapeutics developments. Here, the stress is put on the mathematical problem of the tomography, that can be formulated in terms of an estimation of physical parameters appearing as a set of Partial Differential Equations (PDEs). The Finite Element Method has been chosen here to resolve the diffusion equation because it has no restriction considering the geometry or the homogeneity of the system. It is nonetheless well-known to be time and memory consuming, mainly because of the large dimensions of the involved matrices. Our principal objective is to reduce the model in order to speed up the model computation. For that, a new method based on a multiresolution technique is chosen. All the matrices appearing in the discretized version of the PDEs are projected onto an orthonormal wavelet basis, and reduced according to the multiresolution method. With the first order resolution, this compression leads to the reduction of a factor 2x2 of the initial dimension, the inversion of the matrices is approximately 4 times faster. A validation study on a phantom was conducted to evaluate the feasibility of this reduction method.

  10. Approach to retina optical coherence tomography image processing

    Science.gov (United States)

    Yuan, Jiali; Liu, Ruihua; Xuan, Gao; Yang, Jun; Yuan, Libo

    2007-03-01

    Optical coherence tomography (OCT) is a recently developed imaging technology. By using Zeiss STRATUS OCT one could obtain clear tomography pictures of retina and macula lutea. The clinical use of image processing requires both medical knowledge and expertise in image processing techniques. This paper focused on processing of retina OCT image to design the automatic retina OCT image identification system that could help us evaluate retina, examine and clinically diagnose the fundus diseases. The motivation of our work is to extract the contour and highlight the feature area of the focus clearly and exactly. Generally it is related to image segmentation, enhancement and binarization etc. In the paper we try to reduce the image noise and make the symbolic area connected through color segmentation, low-pass filter and mathematical morphology algorithm etc., finally discern some common and different properties of postprocessing image compared with the real OCT image. Experiments were done on cystoid macular edema, macular hole and normal retina OCT image. The results show that the project raised is feasible and suitable for further image identification and classification according to ophthalmology criteria.

  11. Optimisation of post mortem cardiac computed tomography compared to optical coherence tomography and histopathology - Technical note

    DEFF Research Database (Denmark)

    Precht, Helle; Leth, Peter Mygind

    2014-01-01

    Introduction: Coronary atherosclerosis is a leading cause of mortality. New technological developments in computed tomography (CT), including dual energy, iterative reconstructions and high definition scanning, could significantly improve the non-invasive identification of atherosclerosis plaques. Here, a new method for optimising cardiac coronary CT with optical coherence tomography (OCT) and histopathology is presented. Materials and methods: Twenty human hearts obtained from autopsies were used. A contrast agent that solidifies after cooling was injected into the coronary arteries. CT scanning was performed on the heart alone as well as with the heart in a chest phantom. We used eight different CT protocols and the newest CT technique to image every heart. The OCT and CT images were compared with their corresponding histological sections. A procedure for ensuring the correct alignment of the images was also developed. Results: We have succeeded in developing a new method for post-mortem coronary CT angiography in which an autopsy heart is placed in a chest phantom to simulate clinical CT. Conclusion: The new method permits comparison of CT with OCT and histopathology. This method can also be used for evaluating coronary artery disease, including characterising plaques, and will eventually allow for the detection of rupture-prone plaques, which we will assess in a future study. Clinical testing is our ultimate goal. © 2013 Elsevier Ltd.

  12. Radiographic, microcomputer tomography, and optical coherence tomography investigations of ceramic interfaces

    Science.gov (United States)

    Sinescu, Cosmin; Negrutiu, Meda Lavinia; Ionita, Ciprian; Topala, Florin; Petrescu, Emanuela; Rominu, Roxana; Pop, Daniela Maria; Marsavina, Liviu; Negru, Radu; Bradu, Adrian; Rominu, Mihai; Podoleanu, Adrian Gh.

    2010-12-01

    Imagistic investigation of the metal-ceramic crowns and fixed partial prostheses represent a very important issue in nowadays dentistry. At this time, in dental office, it is difficult or even impossible to evaluate a metal ceramic crown or bridge before setting it in the oral cavity. The possibilities of ceramic fractures are due to small fracture lines or material defects inside the esthetic layers. Material and methods: In this study 25 metal ceramic crowns and fixed partial prostheses were investigated by radiographic method (Rx), micro computer tomography (MicroCT) and optical coherence tomography (OCT) working in Time Domain, at 1300 nm. The OCT system contains two interferometers and one scanner. For each incident analysis a stuck made of 100 slices was obtain. These slices were used in order to obtain a 3D model of the ceramic interface. Results: RX and MicroCT are very powerful instruments that provide a good characterization of the dental construct. It is important to observe the reflections due to the metal infrastructure that could affect the evaluation of the metal ceramic crowns and bridges. The OCT investigations could complete the imagistic evaluation of the dental construct by offering important information when it is need it.

  13. Macular optical coherence tomography findings following blunt ocular trauma

    Science.gov (United States)

    Oladiwura, Dilys; Lim, Lik Thai; Ah-kee, Elliott Yann; Scott, James Angus

    2014-01-01

    This case report describes the optical coherence tomography (OCT) results of Berlin’s edema in a male subject following blunt ocular trauma from a soccer ball. A 27-year-old male presented with blurred vision in his left eye following blunt trauma. On admission, he underwent a complete eye examination and an OCT of the macula. Fundoscopy revealed commotio retinae, observed as an abnormal cream-colored discoloration of the fovea. The OCT showed outer photoreceptor segment disruption, retinal pigment epithelium inter-digitation, and intra-retinal edema of the outer nuclear layer. Following initial management, a repeat OCT after 3 months showed near complete resolution. OCT can be a useful adjunct for monitoring the progress of Berlin’s edema secondary to blunt ocular trauma because Berlin’s edema may present similarly clinically to other ocular trauma, but can affect different layers of the retina depending on the type of injury to the eye. PMID:24899795

  14. Evaluation of microfluidic channels with optical coherence tomography

    KAUST Repository

    Czajkowski, J.

    2010-06-25

    Application of time domain, ultra high resolution optical coherence tomography (UHR-OCT) in evaluation of microfluidic channels is demonstrated. Presented study was done using experimental UHR-OCT device based on a Kerr-lens mode locked Ti:sapphire femtosecond laser, a photonic crystal fibre and modified, free-space Michelson interferometer. To show potential of the technique, microfluidic chip fabricated by VTT Center for Printed Intelligence (Oulu, Finland) was measured. Ability for full volumetric reconstruction in non-contact manner enabled complete characterization of closed entity of a microfluidic channel without contamination and harm for the sample. Measurement, occurring problems, and methods of postprocessing for raw data are described. Results present completely resolved physical structure of the channel, its spatial dimensions, draft angles and evaluation of lamination quality.

  15. Clinical applications of anterior segment optical coherence tomography.

    Science.gov (United States)

    Lim, Su-Ho

    2015-01-01

    Anterior segment optical coherence tomography (AS-OCT) was recently developed and has become a crucial tool in clinical practice. AS-OCT is a noncontact imaging device that provides the detailed structure of the anterior part of the eyes. In this review, the author will discuss the various clinical applications of AS-OCT, such as the normal findings, tear meniscus measurement, ocular surface disease (e.g., pterygium, pinguecula, and scleromalacia), architectural analysis after cataract surgery, post-LASIK keratectasia, Descemet's membrane detachment, evaluation of corneal graft after keratoplasty, corneal deposits (corneal dystrophies and corneal verticillata), keratitis, anterior segment tumors, and glaucoma evaluation (angle assessment, morphological analysis of the filtering bleb after trabeculectomy, or glaucoma drainage device implantation surgery). The author also presents some interesting cases demonstrated via AS-OCT. PMID:25821589

  16. Optical Coherence Tomography and Raman Spectroscopy of the retina

    Energy Technology Data Exchange (ETDEWEB)

    Evans, J W; Zawadzki, R J; Liu, R; Chan, J; Lane, S; Werner, J S

    2009-01-16

    Imaging the structure and correlating it with the biochemical content of the retina holds promise for fundamental research and for clinical applications. Optical coherence tomography (OCT) is commonly used to image the 3D structure of the retina and while the added functionality of biochemical analysis afforded by Raman scattering could provide critical molecular signatures for clinicians and researchers, there are many technical challenges to combining these imaging modalities. We present an ex vivo OCT microscope combined with Raman spectroscopy capable of collecting morphological and molecular information about a sample simultaneously. The combined instrument will be used to investigate remaining technical challenges to combine these imaging modalities, such as the laser power levels needed to achieve a Raman signal above the noise level without damaging the sample.

  17. Optical coherence tomography for vulnerability assessment of sandstone.

    Science.gov (United States)

    Bemand, Elizabeth; Liang, Haida

    2013-05-10

    Sandstone is an important cultural heritage material, in both architectural and natural settings, such as neolithic rock art panels. The majority of deterioration effects in porous materials such as sandstone are influenced by the presence and movement of water through the material. The presence of water within the porous network of a material results in changes in the optical coherence tomography signal intensity that can be used to monitor the wetting front of water penetration of dry porous materials at various depths. The technique is able to detect wetting front velocities from 1 cm s(-1) to 10(-6) cm s(-1), covering the full range of hydraulic conductivities likely to occur in natural sandstones from pervious to impervious. PMID:23669855

  18. Fluorescence-enhanced optical tomography using phase information

    Science.gov (United States)

    Lu, Yujie; Sevick-Muraca, Eva M.

    2011-02-01

    Fluorescence-enhanced optical imaging/tomography (FEOI/FEOT) could play an important role in drug discovery and clinical diagnostics. In recent years, improvement in spatial resolution and quantitative biological information has been increasingly promised. Time- and frequency-resolved FEOT has great potential to obtain improved reconstruction information compared with continuous wave (CW) mode due to the acquisition of more measurement information. In this paper, a phase-only FEOT(PO-FEOT) is proposed and evaluated. In PO-FEOT, a finite element-based linear relationship between the unknown fluorophore variables and phase information obtained from time- and frequency-domain boundary measurements is used in FEOT reconstruction. Synthetic data shows that, compared to the amplitude and phase-based reconstruction, the reconstruction time cost is remarkably reduced when phase is used alone. The reconstructed results show that PO-FEOT with high frequency information can acquire preferable reconstruction quality.

  19. Digital refocusing for transverse resolution improvement in optical coherence tomography

    International Nuclear Information System (INIS)

    Based on the fact that spectral domain (SD) optical coherence tomography (OCT) data can be treated as digital holography (DH) data acquired pointwise, we develop a spectral refocusing algorithm and show its ability to shift the focal region of OCT images obtained from SD OCT data acquired with a tightly focused scanning beam. Although refocusing itself depends on the refractive index of the studied media, we propose a procedure capable of restoring images with resolution equal to the resolution in the focal plane in the whole volume even in case of unknown refractive index of the media. As the proposed refocusing method operates with phases of the 3D Fourier spectrum of the SD OCT signal, it is very sensitive to the object motion during data acquisition. Thus, we also propose phase equalization preprocessing, which allows compensating the influence of such motions

  20. Evaluation of microfluidic channels with optical coherence tomography

    Science.gov (United States)

    Czajkowski, J.; Prykäri, T.; Alarousu, E.; Lauri, J.; Myllylä, R.

    2010-11-01

    Application of time domain, ultra high resolution optical coherence tomography (UHR-OCT) in evaluation of microfluidic channels is demonstrated. Presented study was done using experimental UHR-OCT device based on a Kerr-lens mode locked Ti:sapphire femtosecond laser, a photonic crystal fibre and modified, free-space Michelson interferometer. To show potential of the technique, microfluidic chip fabricated by VTT Center for Printed Intelligence (Oulu, Finland) was measured. Ability for full volumetric reconstruction in non-contact manner enabled complete characterization of closed entity of a microfluidic channel without contamination and harm for the sample. Measurement, occurring problems, and methods of postprocessing for raw data are described. Results present completely resolved physical structure of the channel, its spatial dimensions, draft angles and evaluation of lamination quality.

  1. Statistical analysis of motion contrast in optical coherence tomography angiography

    Science.gov (United States)

    Cheng, Yuxuan; Guo, Li; Pan, Cong; Lu, Tongtong; Hong, Tianyu; Ding, Zhihua; Li, Peng

    2015-11-01

    Optical coherence tomography angiography (Angio-OCT), mainly based on the temporal dynamics of OCT scattering signals, has found a range of potential applications in clinical and scientific research. Based on the model of random phasor sums, temporal statistics of the complex-valued OCT signals are mathematically described. Statistical distributions of the amplitude differential and complex differential Angio-OCT signals are derived. The theories are validated through the flow phantom and live animal experiments. Using the model developed, the origin of the motion contrast in Angio-OCT is mathematically explained, and the implications in the improvement of motion contrast are further discussed, including threshold determination and its residual classification error, averaging method, and scanning protocol. The proposed mathematical model of Angio-OCT signals can aid in the optimal design of the system and associated algorithms.

  2. Imaging cutaneous T-Cell lymphoma with optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H.C.; Hansen Stamp, I.M.; Jemec, G.B.E.

    2012-01-01

    Aim: To investigate the presentation of a patch-stage cutaneous T-cell lymphoma (CTCL) using optical coherence tomography (OCT). Methods: A patient with a patch caused by CTCL was photographed digitally, OCT-scanned and biopsied. A normal skin area adjacent to the patch was OCT-scanned for.......13 mm. A good immediate correlation was found between histology and OCT imaging of the sample. Conclusion: The aetiology of the elongated structures is thought to be lymphomatous infiltrates. Similar findings have been described in ocular lymphoma and may therefore be an important characteristic of...... cutaneous lymphoma. It may further be speculated that the differences in OCT images may reflect the biological behaviour of the infiltrate. This observation therefore suggests that OCT imaging may be a relevant tool for the in vivo investigation of mycosis fungoides and other CTCLs, but in order to verify...

  3. Optical coherence tomography for imaging of skin and skin diseases

    DEFF Research Database (Denmark)

    Mogensen, Mette; Thrane, Lars; Jørgensen, Thomas Martini; Andersen, Peter E.; Jemec, G.B.E.

    2009-01-01

    , as have many diseases. The method can provide accurate measures of epidermal and nail changes in normal tissue. Skin cancer and other tumors, as well as inflammatory diseases, have been studied and good agreement found between OCT images and histopathological architecture. OCT also allows noninvasive......Optical coherence tomography (OCT) is an emerging imaging technology based on light reflection. It provides real-time images with up to 2-mm penetration into the skin and a resolution of approximately 10 ?m. It is routinely used in ophthalmology. The normal skin and its appendages have been studied...... monitoring of morphologic changes in skin diseases and may have a particular role in the monitoring of medical treatment of nonmelanoma skin cancer. The technology is however still evolving and continued technological development will necessitate an ongoing evaluation of its diagnostic accuracy. Several...

  4. Pre-seizure state identified by diffuse optical tomography

    Science.gov (United States)

    Zhang, Tao; Zhou, Junli; Jiang, Ruixin; Yang, Hao; Carney, Paul R.; Jiang, Huabei

    2014-01-01

    In epilepsy it has been challenging to detect early changes in brain activity that occurs prior to seizure onset and to map their origin and evolution for possible intervention. Here we demonstrate using a rat model of generalized epilepsy that diffuse optical tomography (DOT) provides a unique functional neuroimaging modality for noninvasively and continuously tracking such brain activities with high spatiotemporal resolution. We detected early hemodynamic responses with heterogeneous patterns, along with intracranial electroencephalogram gamma power changes, several minutes preceding the electroencephalographic seizure onset, supporting the presence of a ``pre-seizure'' state. We also observed the decoupling between local hemodynamic and neural activities. We found widespread hemodynamic changes evolving from local regions of the bilateral cortex and thalamus to the entire brain, indicating that the onset of generalized seizures may originate locally rather than diffusely. Together, these findings suggest DOT represents a powerful tool for mapping early seizure onset and propagation pathways.

  5. Toward an automated method for optical coherence tomography characterization

    Science.gov (United States)

    Strupler, Mathias; Beckley, Amber M.; Benboujja, Fouzi; Dubois, Sylvain; Noiseux, Isabelle; Mermut, Ozzy; Bouchard, Jean-Pierre; Boudoux, Caroline

    2015-12-01

    With the increasing use of optical coherence tomography (OCT) in biomedical applications, robust yet simple methods for calibrating and benchmarking a system are needed. We present here a procedure based on a calibration object complemented with an algorithm that analyzes three-dimensional OCT datasets to retrieve key characteristics of an OCT system. The calibration object combines state-of-the-art tissue phantom material with a diamond-turned aluminum multisegment mirror. This method is capable of determining rapidly volumetric field-of-view, axial resolution, and image curvature. Moreover, as the phantom material mimics biological tissue, the system's signal and noise levels can be evaluated in conditions close to biological experiments. We believe this method could improve OCT quantitative data analysis and help OCT data comparison for longitudinal or multicenter studies.

  6. Optical coherence tomography of the rat cochlea: preliminary investigations

    Science.gov (United States)

    Wong, Brian J.; de Boer, Johannes F.; Park, Boris H.; Chen, Zhongping; Nelson, J. Stuart

    1999-06-01

    Optical coherence tomography (OCT) was used to image the internal structure of a rat cochlea. Immediately following sacrifice, the temporal bone of a SPrague-Dawley rat was harvested. Axial OCT cross sectional images (over regions of interest, 1 x 1 mm to 2 x 8 mm) were obtained with a spatial resolution of 10-15 ?m. The osseous borders of the lateral membranous labyrinth overlying the cochlea and the scala vestibuli, media, and tympani which were well demarcated by the modiolus, Reissner's and the basilar membranes were clearly identified. OCT can be used to image internal structures in the cochlea without violating the osseous labyrinth, and may potentially be used to diagnose inner ear pathology in vivo in both animal and human subjects.

  7. Optical coherence tomography for imaging of skin and skin diseases

    DEFF Research Database (Denmark)

    Mogensen, Mette; Thrane, Lars; Jørgensen, Thomas Martini; Andersen, Peter E.; Jemec, G.B.E.

    2009-01-01

    , as have many diseases. The method can provide accurate measures of epidermal and nail changes in normal tissue. Skin cancer and other tumors, as well as inflammatory diseases, have been studied and good agreement found between OCT images and histopathological architecture. OCT also allows noninvasive...... monitoring of morphologic changes in skin diseases and may have a particular role in the monitoring of medical treatment of nonmelanoma skin cancer. The technology is however still evolving and continued technological development will necessitate an ongoing evaluation of its diagnostic accuracy. Several......Optical coherence tomography (OCT) is an emerging imaging technology based on light reflection. It provides real-time images with up to 2-mm penetration into the skin and a resolution of approximately 10 μm. It is routinely used in ophthalmology. The normal skin and its appendages have been studied...

  8. Optical coherence tomography of the epidermal sulfakrilate surface strippings

    Directory of Open Access Journals (Sweden)

    Utz S.R.

    2013-09-01

    Full Text Available Method of the epidermal surface biopsy (ESB with the adhesive compositions is the alter-native to the classic his-tological examination. Materials and Methods. In this study medical adhesive "Sulfacrylate" was used, small portions of which had been spread on an object glass, and then on different skin areas. To study the structural organization of the samples ESB the technique of optical coherence tomography (ОСТ was used. Results. We obtained the pictures that visualize the structural organization of the different layers of the epidermis in lichen planus, hyperkeratosis, scabies and other skin diseases. Conclusion. This technique allows non-invasive measurement of high-precision structure of different layers of the epidermis, which can be useful both for research and for the practical dermatology.

  9. Megahertz streak-mode Fourier domain optical coherence tomography.

    Science.gov (United States)

    Wang, Rui; Yun, Julie X; Yuan, Xiaocong; Goodwin, Richard; Markwald, Roger R; Gao, Bruce Z

    2011-06-01

    Here we present an ultrahigh-speed Fourier-domain optical coherence tomography (OCT) that records the OCT spectrum in streak mode with a high-speed area scan camera, which allows higher OCT imaging speed than can be achieved with a line-scan camera. Unlike parallel OCT techniques that also use area scan cameras, the conventional single-mode fiber-based point-scanning mechanism is retained to provide a confocal gate that rejects multiply scattered photons from the sample. When using a 1000 Hz resonant scanner as the streak scanner, 1,016,000 A-scans have been obtained in 1 s. This method's effectiveness has been demonstrated by recording in vivo OCT-image sequences of embryonic chick hearts at 1000 frames/s. In addition, 2-megahertz OCT data have been obtained with another high speed camera. PMID:21721817

  10. Implementation of an Optical Coherence Tomography system for painting characterization

    International Nuclear Information System (INIS)

    Optical Coherence Tomography (OCT) is a new but well established imaging technique for medical diagnosis, which can produce two- or three-dimensional images of bio-tissues with a few ?m spatial resolution. Its potential as a non-invasive tool for art conservation of paintings and other objects has been realized recently. In this work, we report the implementation of two OCT systems applied to painting characterization. One system operates in the so-called spectral domain, with a central wavelength of 840 nm and axial resolution of 10 ?m. The second system has its central wavelength at 1280 nm, with spatial resolution of 20 ?m, and operates in the time domain. Both systems are independently controlled and have imaging software developed in-house using Lab View. Using both systems, a 15 years old acrylic portrait has been analyzed, where the paint layers, light and dark colors, and the cotton treads of the canvas could be identified. (Author)

  11. Investigation of anisotropic scattering for optical tomography in biological tissues

    International Nuclear Information System (INIS)

    Photons with wavelengths in near infrared region are used in optical tomography. Radiation transport theory should be preferred instead of diffusion theory for numerical modelling of photon migration in biological tissues, where diffusion theory is invalid. For example, diffusion theory is not sufficient in the regions of close to boundaries, sources or sinks and highly absorbing or void-like media. Also anisotropic scattering must be considered in the numerical models since scattering is generally highly anisotropic in biological tissues. In addition to the absorption and scattering coefficients, a suitable phase function must be known in anisotropic scattering study. Here we have compared scattering phase functions for anisotropy. Then we have calculated Legendre moments which are necessary for the implementation of anisotropy factors into the transport code, PARTISN. Discrete ordinates method (SN) has been used in the transport calculations. We have obtained solutions first a homogeneous and then heterogeneous medium.

  12. Statistical analysis of motion contrast in optical coherence tomography angiography

    CERN Document Server

    Cheng, Yuxuan; Pan, Cong; Lu, Tongtong; Hong, Tianyu; Ding, Zhihua; Li, Peng

    2015-01-01

    Optical coherence tomography angiography (Angio-OCT), mainly based on the temporal dynamics of OCT scattering signals, has found a range of potential applications in clinical and scientific researches. In this work, based on the model of random phasor sums, temporal statistics of the complex-valued OCT signals are mathematically described. Statistical distributions of the amplitude differential (AD) and complex differential (CD) Angio-OCT signals are derived. The theories are validated through the flow phantom and live animal experiments. Using the model developed in this work, the origin of the motion contrast in Angio-OCT is mathematically explained, and the implications in the improvement of motion contrast are further discussed, including threshold determination and its residual classification error, averaging method, and scanning protocol. The proposed mathematical model of Angio-OCT signals can aid in the optimal design of the system and associated algorithms.

  13. Optical coherence tomography: Monte Carlo simulation and improvement by optical amplification

    DEFF Research Database (Denmark)

    Tycho, Andreas

    2002-01-01

    An advanced novel Monte Carlo simulation model of the detection process of an optical coherence tomography (OCT) system is presented. For the first time it is shown analytically that the applicability of the incoherent Monte Carlo approach to model the heterodyne detection process of an OCT system is firmly justified. This is obtained by calculating the heterodyne mixing of the reference and sample beams in a plane conjugate to the discontinuity in the sample probed by the system. Using this app...

  14. Optical coherence tomography of the pulmonary arteries: A systematic review.

    Science.gov (United States)

    Jorge, Elisabete; Baptista, Rui; Calisto, João; Faria, Henrique; Monteiro, Pedro; Pan, Manuel; Pêgo, Mariano

    2016-01-01

    Optical coherence tomography (OCT) is an imaging technique extensively used for visualizing the coronary circulation, where it assists clinical decision-making. Along with the new interventional procedures being introduced for pulmonary vascular disease, there is an increasing need for intravascular imaging of the pulmonary arteries. Additionally, measurements of the wall thickness of the pulmonary arteries of patients with various types of pulmonary hypertension (PH) may provide relevant diagnostic and prognostic information. The aim of this review is to summarize all the available evidence on the use of OCT for imaging the pulmonary bed and to describe a simple protocol for OCT image acquisition. We conducted a systematic review of the literature using electronic reference databases through February 2015 (MEDLINE, Cochrane Library, Web of Knowledge, and references cited in other studies) and the search terms "optical coherence tomography," "pulmonary hypertension," and "pulmonary arteries." Studies in which OCT was used to image the pulmonary vessels were considered for inclusion. We identified 14 studies reporting OCT imaging data from the pulmonary arteries. OCT was able to identify intravascular thrombi in patients with chronic thromboembolic PH (CTEPH), and an increase in vessel wall thickness was found in most patients with PH, compared with the controls. OCT has also been reported to be useful for the selection of balloon size in the setting of balloon pulmonary angioplasty for CTEPH. The main limitations include lack of standardization, little data on outcomes, cost, and the technical limitations involved in visualizing small-diameter (<1mm) pulmonary vessels. OCT has become a potential tool for the in vivo study of vascular changes in the pulmonary arteries, and may provide additional information in the assessment of patients with PH. Prospective high-quality studies assessing the safety, validity, and clinical impact of OCT imaging for pulmonary vessels are warranted. PMID:26572955

  15. Image features of punctate inner choroiditis on optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Hao Zhang

    2014-05-01

    Full Text Available AIM: To observe the image features of punctate inner choroiditis(PICat different stages by optical coherence tomography(OCT. METHODS: A retrospective analysis was performed on 24 PIC patients(33 eyeswith the median age of 29 years old(range: 16-47, where 19 cases were female(79.2%. Among the 24 cases, 9 cases were bilateral onset(37.5%and 19 cases were with myopia(79.2%. All of the patients were given fundus fluorescein angiography(FFAand optical coherence tomography(OCT. Through OCT, patients with PIC at different stages were observed for morphology of outer plexiform layer(OPLand outer nuclear layer(ONL, integrity of inside and outside connections of visual cells(IS/OS, integrity and morphology of reflective tape on retinal pigment epithelium(RPE, and light reflection intensity of choroid and sclera. RESULTS: The results showed that during active stage and atrophic stage of PIC, there were excavation of ONL and OPL towards thechoroid, weakened or partially disappeared reflective tape of IS/OS, interrupted or fuzzy reflective tape of RPE, hillock-like protrusion of RPE towards the ONL or ONL with medium to high reflection, and strengthened reflection of choroid and sclera under the lesion partly. The rates of the above performances in active stage were 9.1%, 100%, 100%, 86.4% and 77.3%, respectively, and in recovery stage, the corresponding rates were 81.8%, 90.1%, 81.8%, 45.5%, and 90.1%. Medium to high reflection of the protrusion under ONL was more commonly seen in active stage, with PPCONCLUSION: There are both common points and differences of OCT features in PIC at active stage and atrophic stage, suggesting the injury and repair pathological process of outer neural epithelium, retinal pigment epithelium and innerchoroid inflammatory.

  16. Construction of the Optical Delay Line for the Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Kitsakorn Locharoenrat

    2013-03-01

    Full Text Available We have constructed the compact optical delay line for the axial scanning of time-domain optical coherence tomography. The delay line contains the retro-reflector, and the inclined reflection mirror, as well as the scanning mirror. This delay line is performed by the low-coherence reflectometer with a scanning speed of 400 Hz. The dimension of the delay line is 2 cm × 2 cm. We have achieved the scanning range of about 3 mm within the scanning mirror’s vibration angle of approximately 10°

  17. Smart pixels for real-time optical coherence tomography

    Science.gov (United States)

    Beer, Stephan; Zeller, Philipp; Blanc, Nicolas; Lustenberger, Felix; Seitz, Peter

    2004-04-01

    Optical Coherence Tomography (OCT) is an optical imaging technique allowing the acquisition of three-dimensional images with micrometer resolution. It is very well suited to cross-sectional imaging of highly scattering materials, such as most biomedical tissues. A novel custom image sensor based on smart pixels dedicated to parallel OCT (pOCT) is presented. Massively parallel detection and signal processing enables a significant increase in the 3D frame rate and a reduction of the mechanical complexity of the complete setup compared to conventional point-scanning OCT. This renders the parallel OCT technique particularly advantageous for high-speed applications in industrial and biomedical domains while also reducing overall system costs. The sensor architecture presented in this article overcomes the main challenges for OCT using parallel detection such as data rate, power consumption, circuit size, and optical sensitivity. Each pixel of the pOCT sensor contains a low-power signal demodulation circuit allowing the simultaneous detection of the envelope and the phase information of the optical interferometry signal. An automatic photocurrent offset-compensation circuit, a synchronous sampling stage, programmable time averaging, and random pixel accessing are also incorporated at the pixel level. The low-power demodulation principle chosen as well as alternative implementations are discussed. The characterization results of the sensor exhibit a sensitivity of at least 74 dB, which is within 4 dB of the theoretical limit of a shot-noise limited OCT system. Real-time high-resolution three-dimensional tomographic imaging is demonstrated along with corresponding performance measurements.

  18. Region-of-interest diffuse optical tomography system

    Science.gov (United States)

    Saikia, Manob Jyoti; Kanhirodan, Rajan

    2016-01-01

    Diffuse optical tomography (DOT) using near-infrared light is a promising tool for non-invasive imaging of deep tissue. This technique is capable of quantitative reconstruction of absorption (?a) and scattering coefficient (?s) inhomogeneities in the tissue. The rationale for reconstructing the optical property map is that the absorption coefficient variation provides diagnostic information about metabolic and disease states of the tissue. The aim of DOT is to reconstruct the internal tissue cross section with good spatial resolution and contrast from noisy measurements non-invasively. We develop a region-of-interest scanning system based on DOT principles. Modulated light is injected into the phantom/tissue through one of the four light emitting diode sources. The light traversing through the tissue gets partially absorbed and scattered multiple times. The intensity and phase of the exiting light are measured using a set of photodetectors. The light transport through a tissue is diffusive in nature and is modeled using radiative transfer equation. However, a simplified model based on diffusion equation (DE) can be used if the system satisfies following conditions: (a) the optical parameter of the inhomogeneity is close to the optical property of the background, and (b) ?s of the medium is much greater than ?a (?s > > ?a). The light transport through a highly scattering tissue satisfies both of these conditions. A discrete version of DE based on finite element method is used for solving the inverse problem. The depth of probing light inside the tissue depends on the wavelength of light, absorption, and scattering coefficients of the medium and the separation between the source and detector locations. Extensive simulation studies have been carried out and the results are validated using two sets of experimental measurements. The utility of the system can be further improved by using multiple wavelength light sources. In such a scheme, the spectroscopic variation of absorption coefficient in the tissue can be used to arrive at the oxygenation changes in the tissue.

  19. Spectral domain optical coherence tomography morphology in optic disc pit associated maculopathy

    Directory of Open Access Journals (Sweden)

    Janusz Michalewski

    2014-01-01

    Full Text Available Purpose: Our purpose was to study the clinical manifestation and course of optic pit maculopathy using Spectral Domain Optical Coherence Tomography (SD- OCT images. Materials and Methods: We used SD-OCT to examine 20 eyes of 19 patients with a macular detachment in combination with an optic. Results: We observed five different fovea appearances in regard to fluid localization. In five eyes, we recorded changes in the fluid distribution with SD-OCT. In 17/20 eyes, we noted a communication between the perineural and subretinal and/or intraretinal space at the margin of the optic disc. Conclusion: 3-dimensional SD-OCT (3D-SDOCT scans revealed a three-fold connection, between subretinal and intraretinal space, perineural space, and the vitreous cavity. Therefore, we suppose that intraretinal or subretinal fluid in optic pit maculopathy may have both a vitreous and cerebrospinal origin. A membrane, covering the optic nerve was noted in 14 cases. Even if it seems intact in some B-scans, it is not complete in others several micrometers apart. Additionally, we observed fluid accumulation below the margin of the optic disc and hyperreflective porous tissue in the optic disc excavation. Those findings do not influence the course of maculopathy.

  20. Characterization of tissue optical properties for prostate PDT using interstitial diffuse optical tomography

    Science.gov (United States)

    Liang, Xing; Wang, Ken Kang-hsin; Zhu, Timothy C.

    2012-02-01

    Photodynamic therapy (PDT) is an important treatment modality for localized diseases such as prostate cancer. In prostate PDT, light distribution is an important factor because it is directly related to treatment efficacy. During PDT, light distribution is determined by tissue optical property distributions (or heterogeneity). In this study, an interstitial diffuse optical tomography (iDOT) method was used to characterize optical properties in tissues. Optical properties (absorption and reduced scattering coefficients) of the prostate gland were reconstructed by solving the inverse problem using an adjoint model based on diffusion equation using a modified matlab public user code NIRFAST. In the modified NIRFAST method, linear sources were modeled for the reconstruction. Cross talking between absorption coefficients and reduced scattering coefficients were studied to have minimal effect, and a constrained optical property method (set either absorption coefficient or reduced scattering coefficient to be homogeneous) is also studied. A prostate phantom with optical anomalies was used to verify the iDOT method. The reconstructed results were compared with the known optical properties, and the spatial distribution of optical properties for this phantom was successfully reconstructed.

  1. A dual modality fluorescence confocal and optical coherence tomography microendoscope

    Science.gov (United States)

    Makhlouf, Houssine; Rouse, Andrew R.; Gmitro, Arthur F.

    2010-02-01

    We demonstrate the implementation of a Fourier domain optical coherence tomography (OCT) imaging system incorporated into the optical train of a fluorescence confocal microendoscope. The slit-scanning confocal system has been presented previously and achieves 3?m lateral resolution and 25?m axial resolution over a field of view of 430?m. Its multi-spectral mode of operation captures images with 6nm average spectral resolution. To incorporate OCT imaging, a common-path interferometer is made with a super luminescent diode and a reference coverslip located at the distal end of the fiber bundle catheter. The infrared diode spectral width allows a theoretical OCT axial resolution of 12.9?m. Light from the reference and sample combine, and a diffraction grating produces a spectral interferogram on the same 2D CCD camera used for confocal microendoscopic imaging. OCT depth information is recovered by a Fourier transform along the spectral dispersion direction. Proper operation of the system scan mirrors allows rapid switching between confocal and OCT imaging modes. The OCT extension takes advantage of the slit geometry, so that a 2D image is acquired without scanning. Combining confocal and OCT imaging modalities provides a more comprehensive view of tissue and the potential to improve disease diagnosis. A preliminary bench-top system design and imaging results are presented.

  2. Monte Carlo Investigation of Optical Coherence Tomography Retinal Oximetry.

    Science.gov (United States)

    Chen, Siyu; Yi, Ji; Liu, Wenzhong; Backman, Vadim; Zhang, Hao F

    2015-09-01

    Optical coherence tomography (OCT) oximetry explores the possibility to measure retinal hemoglobin oxygen saturation level (sO2). We investigated the accuracy of OCT retinal oximetry using Monte Carlo simulation in a commonly used four-layer retinal model. After we determined the appropriate number of simulated photon packets, we studied the effects of blood vessel diameter, signal sampling position, physiological sO2 level, and the blood packing factor on the accuracy of sO2 estimation in OCT retinal oximetry. The simulation results showed that a packing factor between 0.2 and 0.4 yields a reasonably accurate estimation of sO2 within a 5% error tolerance, which is independent of vessel diameter and sampling position, when visible-light illumination is used in OCT. We further explored the optimal optical spectral range for OCT retinal oximetry. The simulation results suggest that visible spectral range around 560 nm is better suited than near-infrared spectral range around 800 nm for OCT oximetry to warrant accurate measurements. PMID:25955984

  3. Depth Compensated Spectral Domain Optical Coherence Tomography via Digital Compensation

    CERN Document Server

    Boroomand, Ameneh; Shafiee, Mohammad Javad; Bizheva, Kostadinka; Wong, Alexander

    2015-01-01

    Spectral Domain Optical Coherence Tomography (SD-OCT) is a well-known imaging modality which allows for \\textit{in-vivo} visualization of the morphology of different biological tissues at cellular level resolutions. The overall SD-OCT imaging quality in terms of axial resolution and Signal-to-Noise Ratio (SNR) degrades with imaging depth, while the lateral resolution degrades with distance from the focal plane. This image quality degradation is due both to the design of the SD-OCT imaging system and the optical properties of the imaged object. Here, we present a novel Depth Compensated SD-OCT (DC-OCT) system that integrates a Depth Compensating Digital Signal Processing (DC-DSP) module to improve the overall imaging quality via digital compensation. The designed DC-DSP module can be integrated to any SD-OCT system and is able to simultaneously compensate for the depth-dependent loss of axial and lateral resolutions, depth-varying SNR, as well as sidelobe artifact for improved imaging quality. The integrated D...

  4. Polarization-sensitive optical coherence tomography with decorrelated channels

    Science.gov (United States)

    Zaatari, Haitham N.; Kemp, Nate J.; Akkin, Taner; Rylander, Henry G., III; Milner, Thomas E.

    2004-07-01

    We describe a Polarization Sensitive Optical Coherence Tomography (PS-OCT) system with de-correlated horizontal and vertical channels. Construction of PS-OCT depth-resolved images is achieved with a scanning bulk Michelson interferometer and a broadband TiAl2O3 femtosecond laser source. We de-correlate and delay horizontal and vertical channels using a birefringent crystal in the source path and calcite prism pairs in the sample and reference paths. Cross-correlation and phase changes between horizontal and vertical channels are measured at different reference-sample optical delays in correlated and de-correlated PS-OCT. PS-OCT with de-correlated (DPS-OCT) channels can broaden applications to include de-correlated Doppler imaging of blood flow and imaging the retinal nerve fiber layer with delayed channels. We achieve a differential delay of 0-400 microns between vertical and horizontal channels by translating the calcite prisms. DPS-OCT system design and experimental measurements are presented and discussed.

  5. Extended hierarchical Bayesian diffuse optical tomography for removing scalp artifact.

    Science.gov (United States)

    Shimokawa, Takeaki; Kosaka, Takashi; Yamashita, Okito; Hiroe, Nobuo; Amita, Takashi; Inoue, Yoshihiro; Sato, Masa-Aki

    2013-01-01

    Functional near-infrared spectroscopy (fNIRS) can non-invasively measure hemodynamic responses in the cerebral cortex with a portable apparatus. However, the observation signal in fNIRS measurements is contaminated by the artifact signal from the hemodynamic response in the scalp. In this paper, we propose a method to separate the signals from the cortex and the scalp by estimating both hemodynamic changes by diffuse optical tomography (DOT). In the inverse problem of DOT, we introduce smooth regularization to the hemodynamic change in the scalp and sparse regularization to that in the cortex based on the nature of the hemodynamic responses. These appropriate regularization models, with the spatial information of optical paths of many measurement channels, allow three-dimensional reconstruction of both hemodynamic changes. We validate our proposed method through two-layer phantom experiments and MRI-based head-model simulations. In both experiments, the proposed method simultaneously estimates the superficial smooth activity in the scalp area and the deep localized activity in the cortical area. PMID:24298404

  6. Optical coherence tomography: imaging architect for dermal microdialysis in psoriasis

    Science.gov (United States)

    O'Connell, M.-L.; O'Connor, W.; Ramsay, B.; Guihen, E.; Ho, W. L.; Leahy, M. J.

    2011-03-01

    Optical coherence tomography (OCT) has been used as part of a ground breaking translational study to shed some light on one of the worlds most prevalent autoimmune diseases; psoriasis. The work successfully integrates the fields of optical imaging, biochemistry and dermatology in conducting a dermal microdialysis (DMD) trial for quantitative histamine assessment amongst a group of psoriasis sufferers. The DMD process involves temporary insertion of microscopic hollow tubes into a layer of skin to measure the levels of histamine and other important biological molecules in psoriasis. For comparison purposes, DMD catheters were implanted into healthy, peri-lesional and lesional skin regions. The catheters' entry and exit points and their precise locations in the epidermal layer of the skin were confirmed using OCT thus obtaining high resolution, wide-field images of the affected skin as well as catheter placement whilst local microdialysis enabled a tissue chemistry profile to be obtained from these three skin regions including histamine, a local immune system activator known to contribute towards itch and inflammation. Together these tools offer a synergistic approach in the clinical assessment of the disease. In addition, OCT delivered a non-invasive and rapid method for analyzing the affected skin architecture.

  7. Vascular wall stress during intravascular optical coherence tomography imaging

    Science.gov (United States)

    Sun, Cuiru; Yang, Victor

    2015-03-01

    Biomechanical properties of arterial wall is crucial for understanding the changes in the cardiovascular system. Catheters are used during intravascular optical coherence tomography (IVOCT) imaging. The presence of a catheter alters the flow field, pressure distribution and frictional resistance to flow in an artery. In this paper, we first study the transmural stress distribution of the catheterized vessel. COMSOL (COMSOL 4.4) was used to simulate the blood flow induced deformation in a catheterized vessel. Blood is modeled as an incompressible Newtonian fluid. Stress distribution from an three-layer vascular model with an eccentric catheter are simulated, which provides a general idea about the distribution of the displacement and the stress. Optical coherence elastography techniques were then applied to porcine carotid artery samples to look at the deformation status of the vascular wall during saline or water injection. Preliminary simulation results show nonuniform stress distribution in the circumferential direction of the eccentrically catheterized vascular model. Three strain rate methods were tested for intravascular OCE application. The tissue Doppler method has the potential to be further developed to image the vascular wall biomechnical properties in vivo. Although results in this study are not validated quantitatively, the experiments and methods may be valuable for intravascular OCE studies, which may provide important information for cardiovascular disease prevention, diagnosis and treatment.

  8. Monte Carlo modeling of human tooth optical coherence tomography imaging

    International Nuclear Information System (INIS)

    We present a Monte Carlo model for optical coherence tomography (OCT) imaging of human tooth. The model is implemented by combining the simulation of a Gaussian beam with simulation for photon propagation in a two-layer human tooth model with non-parallel surfaces through a Monte Carlo method. The geometry and the optical parameters of the human tooth model are chosen on the basis of the experimental OCT images. The results show that the simulated OCT images are qualitatively consistent with the experimental ones. Using the model, we demonstrate the following: firstly, two types of photons contribute to the information of morphological features and noise in the OCT image of a human tooth, respectively. Secondly, the critical imaging depth of the tooth model is obtained, and it is found to decrease significantly with increasing mineral loss, simulated as different enamel scattering coefficients. Finally, the best focus position is located below and close to the dental surface by analysis of the effect of focus positions on the OCT signal and critical imaging depth. We anticipate that this modeling will become a powerful and accurate tool for a preliminary numerical study of the OCT technique on diseases of dental hard tissue in human teeth. (paper)

  9. High-resolution extended source optical coherence tomography.

    Science.gov (United States)

    Yu, Xiaojun; Liu, Xinyu; Chen, Si; Luo, Yuemei; Wang, Xianghong; Liu, Linbo

    2015-10-01

    High resolution optical coherence tomography (OCT) is capable of providing detailed tissue microstructures that are critical for disease diagnosis, yet its sensitivity is usually degraded since the system key components are typically not working at their respective center wavelengths. We developed a novel imaging system that achieves enhanced sensitivity without axial resolution degradation by the use of a spectrally encoded extended source (SEES) technique; it allows larger sample power without exceeding the maximum permissible exposure (MPE). In this study, we demonstrate a high-resolution extended source (HRES) OCT system, which is capable of providing a transverse resolution of 4.4 µm and an axial resolution of 2.1 µm in air with the SEES technique. We first theoretically show a sensitivity advantage of 6-dB of the HRES-OCT over that of its point source counterpart using numerical simulations, and then experimentally validate the applicability of the SEES technique to high-resolution OCT (HR-OCT) by comparing the HRES-OCT with an equivalent point-source system. In the HRES-OCT system, a dispersive prism was placed in the infinity space of the sample arm optics to spectrally extend the visual angle (angular subtense) of the light source to 10.3 mrad. This extended source allowed ~4 times larger MPE than its point source counterpart, which results in an enhancement of ~6 dB in sensitivity. Specifically, to solve the unbalanced dispersion between the sample and the reference arm optics, we proposed easy and efficient methods for system calibration and dispersion correction, respectively. With a maximum scanning speed reaching up to 60K A-lines/s, we further conducted imaging experiments with HRES-OCT using the human fingertip in vivo and the swine eye tissues ex vivo. Results demonstrate that the HRES-OCT is able to achieve significantly larger penetration depth than its conventional point source OCT counterpart. PMID:26480153

  10. Root canal filling evaluation using optical coherence tomography

    Science.gov (United States)

    Negrutiu, Meda L.; Sinescu, Cosmin; Topala, Florin; Nica, Luminita; Ionita, Ciprian; Marcauteanu, Corina; Goguta, Luciana; Bradu, Adrian; Dobre, George; Rominu, Mihai; Podoleanu, Adrian Gh.

    2010-04-01

    Endodontic therapy consists in cleaning and shaping the root canal system, removing organic debris and sealing the intra-canal space with permanent filling materials. The purpose of this study was to evaluate various root canal fillings in order to detect material defects, the marginal adaptation at the root canal walls and to assess the quality of the apical sealing. 21 extracted single-root canal human teeth were selected for this study. We instrumented all roots using NiTi rotary instruments. All canals were enlarged with a 6% taper size 30 GT instrument, 0,5 mm from the anatomical apex. The root canals were irrigated with 5% sodium hypochlorite, followed by 17% ethylenediaminetetraacetic acid (EDTA). After the instrumentation was completed, the root canals were obturated using a thermoplasticizable polymer of polyesters. In order to assess the defects inside the filling material and the marginal fit to the root canal walls, the conebeam micro-computed tomography (CB?CT) was used first. After the CB?CT investigation, time domain optical coherence tomography working in en face mode (TDefOCT) was employed to evaluate the previous samples. The TDefOCT system was working at 1300 nm and was doubled by a confocal channel at 970 nm. The results obtained by CB?CT revealed no visible defects inside the root-canal fillings and at the interfaces with the root-canal walls. TDefOCT investigations permit to visualize a more complex stratificated structure at the interface filling material/dental hard tissue and in the apical region.

  11. Optical tomography with structured illumination using the three-dimensional FN method

    CERN Document Server

    Machida, Manabu

    2015-01-01

    One way of formulating optical tomography is to use the Born series, which is given by the Green's function for the homogeneous medium. The three-dimensional FN method is a numerical method of obtaining the specific intensity of the radiative transport equation expressed as a superposition of three-dimensional singular eigenfunctions. In this paper, we compute the Green's function for the radiative transport equation using the three-dimensional FN method without making diffusion approximation. To illustrate the present formulation of optical tomography, we consider optical tomography with structured illumination.

  12. Donor disc attachment assessment with intraoperative spectral optical coherence tomography during descemet stripping automated endothelial keratoplasty

    Directory of Open Access Journals (Sweden)

    Edward Wylegala

    2013-01-01

    Full Text Available Optical coherence tomography has already been proven to be useful for pre- and post-surgical anterior eye segment assessment, especially in lamellar keratoplasty procedures. There is no evidence for intraoperative usefulness of optical coherence tomography (OCT. We present a case report of the intraoperative donor disc attachment assessment with spectral-domain optical coherence tomography in case of Descemet stripping automated endothelial keratoplasty (DSAEK surgery combined with corneal incisions. The effectiveness of the performed corneal stab incisions was visualized directly by OCT scan analysis. OCT assisted DSAEK allows the assessment of the accuracy of the Descemet stripping and donor disc attachment.

  13. Intra- and Inter-Frame Differential Doppler Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Tilman Schmoll

    2015-09-01

    Full Text Available Spectrometer based optical coherence tomography suffers from fringe washout for fast flow, a drawback for flow visualization, which is of interest for both lable-free optical angiography and flow quantification. We presented a method, which can be used to contrast very fast flows, while maintaining relatively low A-scan rates. It is based on introducing a phase shift of 01.jpg during acquisition such that the interference fringes associated to moving sample structures are recovered depending on the axial velocity. This enables the use of slower line scan cameras for measuring the fast blood flows within the large vessels in the region of the optic nerve head, while keeping good sensitivity. Furthermore it can be used to contrast the fast moving structures by attenuating the static and slower moving tissue signals. A drawback is still the narrow velocity bandwidth, which is not optimal for providing optical angiography for the full vascular plexus. Nevertheless, it could be of value for following fast dynamic changes, as for example in optical elastography. We introduce different variants of this method, based on intra-frame phase switching, as well as between consecutive A-scans and B-scans, which are then pairwise summed. A phase shift of 01.jpg between summed scans is in fact equivalent to subtraction of both in general complex valued scans. Analyzing complex signal differences between successive B-scans allows in particular contrasting very slow flows of the capillary network. After setting the theoretical framework we show proof-of-principle measurements with a piezo mirror, as well as in vivo measurements of the human retina for the different intra-frame phase shifting schemes. We further show the capability to contrast the parafoveal capillary structure with the differential inter B-scan method and discuss its limitations. Improvement of the sensitivity might be achieved by increasing the number of B-scans to be used for calculating the signal differences, as well as by increasing the sampling density. Care must then be taken for in vivo imaging to keep the total measurement time still sufficiently small, typically a few seconds. The method may proof as a valuable diagnostic tool, as several retinal diseases will manifest at an early stage in capillary disorders.

  14. Compact MEMS-based Adaptive Optics Optical Coherence Tomography for Clinical Use

    Energy Technology Data Exchange (ETDEWEB)

    Chen, D; Olivier, S; Jones, S; Zawadzki, R; Evans, J; Choi, S; Werner, J

    2008-02-04

    We describe a compact MEMS-based adaptive optics (AO) optical coherence tomography system with improved AO performance and ease of clinical use. A typical AO system consists of a Shack-Hartmann wavefront sensor and a deformable mirror that measures and corrects the ocular and system aberrations. Because of the limitation on the current deformable mirror technologies, the amount of real-time ocular-aberration compensation is restricted and small in the previous AO-OCT instruments. In this instrument, we proposed to add an optical apparatus to correct the spectacle aberrations of the patients such as myopia, hyperopia and astigmatism. This eliminated the tedious process of the trial lenses in clinical imaging. Different amount of spectacle aberration compensation was achieved by motorized stages and automated with the AO computer for ease of clinical use. In addition, the compact AO-OCT was optimized to have minimum system aberrations to reduce AO registration errors and improve AO performance.

  15. Development of an electro-optically tuned optical coherence tomography system for imaging dental lesions.

    Science.gov (United States)

    Damodaran, Vani; Vasa, Nilesh J

    2014-01-01

    A conventional optical coherence tomography (OCT) system was set up in-house to image early dental caries, identify gap formation in the bonding interface for restoration and secondary caries. Two-dimensional images of tooth samples was obtained and dental defect were identified. A novel electro-optic tuning system is proposed in order to improve scanning speed and to perform noiseless imaging. Preliminary studies were conducted with two crystals namely, LiNbO3 (Lithium Niobate) and KTP (Potassium Titanyl Phosphate) using a SLED source for OCT system and the simulated and experimental results were found to be qualitatively similar. The tuning range for LiNbO3 and KTP was found to be in the order of few micrometers whereas KTN (Potassium Tantalate Niobate) using the quadratic electro-optic effect is expected to show scanning range of tens of micrometers. KTN based hybrid scanning for dental caries imaging is also planned. PMID:25569924

  16. Clinical manifestations of optic pit maculopathy as demonstrated by spectral domain optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Tzu JH

    2013-01-01

    Full Text Available Jonathan H Tzu, Harry W Flynn Jr, Audina M Berrocal, William E Smiddy, Timothy G Murray, Yale L FisherDepartment of Ophthalmology, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USAPurpose: The purpose of this retrospective study was to evaluate the characteristic features, including spectral-domain optical coherence tomography (SD-OCT, clinical course, and outcome of treatment if given for patients with optic disc pit maculopathy.Methods: We investigated a consecutive series of patients with a diagnosis of optic pit maculopathy treated between 2001 and 2012 at the Bascom Palmer Eye Institute. Patients were divided into two main groups, ie, patients who were observed without surgery and patients who received surgical intervention. The main outcome measures were presenting and final visual acuity, and changes in SD-OCT imaging were recorded. Other data including age, gender, eye, age of onset, length of follow-up, location of optic pit, and location of fluid by OCT were also recorded.Results: On OCT, 67% (12/18 of the eyes showed schisis-like cavities, 22% (4/18 had only subretinal fluid, and 17% (3/18 had only a schisis-like cavity without subretinal fluid. In the patients managed by observation, visual acuity was ?20/200 in 6/8 eyes initially and 6/8 eyes at last follow-up. Ten of 18 patients received either focal laser, surgery or both. Six of 10 eyes undergoing surgery had initial visual acuity ? 20/200, and 8 of 10 eyes undergoing surgery had a visual acuity of ?20/200 at last follow-up.Conclusion: In this study, many eyes were observed and remained stable during follow-up. In eyes with reduced vision, surgical intervention produced variable outcomes, and persistent intraretinal/subretinal fluid was a common occurrence.Keywords: optic pit maculopathy, spectral-domain optical coherence tomography

  17. Choroidal thinning in high myopia measured by optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Ikuno Y

    2013-05-01

    Full Text Available Yasushi Ikuno, Satoko Fujimoto, Yukari Jo, Tomoko Asai, Kohji NishidaDepartment of Ophthalmology, Osaka University Graduate School of Medicine, Osaka, JapanPurpose: To investigate the rate of choroidal thinning in highly myopic eyes.Patients and methods: A retrospective observational study of 37 eyes of 26 subjects (nine males and 17 females, mean age 39.6 ± 7.7 years with high myopia but no pathologies who had undergone spectral domain optical coherence tomography and repeated the test 1 year later (1 ± 0.25 year at Osaka University Hospital, Osaka, Japan. Patients older than 50 years with visual acuity worse than 20/40 or with whitish chorioretinal atrophy involving the macula were excluded. Two masked raters measured the choroidal thicknesses (CTs at the foveda, 3 mm superiorly, inferiorly, temporally, and nasally on the images and averaged the values. The second examination was about 365 days after the baseline examination. The CT reduction per year (CTRPY was defined as (CT 1 year after - baseline CT/days between the two examinations × 365. The retinal thicknesses were also investigated.Results: The CTRPY at the fovea was ?1.0 ± 22.0 µm (range –50.2 to 98.5 at the fovea, –6.5 ± 24.3 µm (range ?65.8 to 90.2 temporally, –0.5 ± 22.3 µm (range –27.1 to 82.5 nasally, –9.7 ± 21.7 µm (range –40.1 to 60.1 superiorly, and –1.4 ± 25.5 µm (range –85.6 to 75.2 inferiorly. There were no significant differences in the CTRPY at each location (P = 0.34. The CT decreased significantly (P < 0.05 only superiorly. The superior CTRPY was negatively correlated with the axial length (P < 0.05. The retinal thickness at the fovea did not change. Stepwise analysis for CTRPY selected axial length (P = 0.04, R2 = 0.13 and age (P = 0.08, R2 = 0.21 as relevant factors.Conclusions: The highly myopic choroid might gradually thin and be affected by many factors. Location and axial length are key factors to regulate the rate of choroidal thinning in highly myopic eyes. Overall choroidal thickness was not found to change significantly. Longer follow-ups are needed.Keywords: high myopia, choroid, optical coherence tomography, age

  18. Fourier optics analysis of phase-mask-based path-length-multiplexed optical coherence tomography.

    Science.gov (United States)

    Yin, Biwei; Dwelle, Jordan; Wang, Bingqing; Wang, Tianyi; Feldman, Marc D; Rylander, Henry G; Milner, Thomas E

    2015-11-01

    Optical coherence tomography (OCT) is an imaging technique that constructs a depth-resolved image by measuring the optical path-length difference between broadband light backscattered from a sample and a reference surface. For many OCT sample arm optical configurations, sample illumination and backscattered light detection share a common path. When a phase mask is placed in the sample path, features in the detected signal are observed, which suggests that an analysis of a generic common path OCT imaging system is warranted. In this study, we present a Fourier optics analysis using a Fresnel diffraction approximation of an OCT system with a path-length-multiplexing element (PME) inserted in the sample arm optics. The analysis may be generalized for most phase-mask-based OCT systems. A radial-angle-diverse PME is analyzed in detail, and the point spread function, coherent transfer function, sensitivity of backscattering angular diversity detection, and signal formation in terms of sample spatial frequency are simulated and discussed. The analysis reveals important imaging features and application limitations of OCT imaging systems with a phase mask in the sample path optics. PMID:26560931

  19. The use of optical coherence tomography in maxillofacial surgery

    Science.gov (United States)

    Al-Obaidi, Mohammed; Tandon, Rahul; Tiwana, Paul

    2015-02-01

    The ever-evolving medical field continues to trend toward less invasive approaches to the diagnosis and treatment of pathological conditions. Basic sciences research has allowed for improved technologies that are translated to the clinical sciences. Similarly, advancements in imaging modalities continue to improve and their applications become more varied. As such, surgeons and pathologists are able to depend on smaller samples for tissue diagnosis of pathological disease, where once large sections of tissue were needed. Optical coherence tomography (OCT), a high-resolution imaging technique, has been used extensively in different medical fields to improve diagnostic yield. Its use in dental fields, particularly in oral and maxillofacial surgery, remains limited. Our goal is to assess the use of OCT for improving soft tissue analysis and diagnosis, particularly for its applications in the field of oral and maxillofacial surgery. Optical coherence tomography is a modality that uses an optical signal using safe near-infrared light which is reflected off the sub-surface structures. This allows for high-resolution cross-sectional images of the tissue morphology to be obtained. Ophthalmologists have been using OCT to obtain images of the retina to assess for age-related macular degeneration. More recently, OCT has been used by Interventional Cardiology to image coronary arteries, and assess plaque thickness and morphology. This technology is now being investigated in several medical fields as a form of optical biopsy, providing in situ images with high-resolution morphology of tissues. We are particularly interested in its use on epithelial tissues, and therefore performed a literature review on the use of OCT for assessing epithelium. Evaluation of histologically-diagnosed actinic keratosis, for example, was found to correlate well with the imaging discrepancies found on OCT; and the in vivo assessment of atypical keratinocytes was firmly established. Additionally, studies have shown a potential application in that OCT may provide a method for studying the evolution of epithelial lesions OCT's potential in producing high-resolution images of tissue morphology can prove to be a valuable tool for characterizing different soft tissue pathological disorders. Furthermore, it has been shown to measure changes in light intensity at tissue-fluid interfaces, which can provide surgeons the ability to characterize oral mucosal surfaces noninvasively. OCT can also prove to be valuable in detecting oral cancerous and pre-cancerous lesions, as altered epithelium containing increased dysplasia shows differences in light scattering than normal epithelium. Additionally, OCT has been shown to analyze deeper collagen tissues of the oral mucosa and is not limited to the surface epithelium. This can aid in characterizing such inflammatory conditions that alter these tissues. Several tissue samples from the maxillofacial region were obtained and assessed using an OCT device at our institution. The analysis has shown high-resolution images of soft tissue-bone interface, titanium implant-bone interface, and other anatomical sites within the oral cavity. OCT has been shown to be a valuable modality in different medical fields. Its use in oral and maxillofacial surgery can potentially aid in diagnostic techniques. Alongside traditional histological technique, it can be help characterize tissues at the cellular level, which would improve costs, time, and most importantly, patient care. We aim to introduce OCT and its diagnostic abilities to the field of oral and maxillofacial surgery to help aid clinicians and provide improved care for patients.

  20. Imaging of collagen deposition disorders using optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H C; Mogensen, M

    2015-01-01

    BACKGROUND: Collagen deposition disorders such as hypertrophic scars, keloids and scleroderma can be associated with significant stigma and embarrassment. These disorders often constitute considerable impairment to quality of life, with treatment posing to be a substantial challenge. Optical coherence tomography (OCT) provides a non-invasive, easily applicable bedside optical imaging method for assessment of the skin. It is hypothesized that OCT imaging may be useful in assessing fibrosis to avoid additional biopsies that could potentially worsen the scarring. METHOD: Thirty-three patients with ordinary scars, hypertrophic scars, keloid scarring, lichen sclerosus et atrophicus and localized or systemic scleroderma were recruited for this pilot study. Affected tissue and adjacent healthy skin were scanned using OCT and digitally photographed. Density measurements were performed in ImageJ on OCT images from scleroderma patients, both systemic and morphea (10 patients), keloid patients (10 patients) and healthyskin adjacent to keloids (10 patients). RESULTS: OCT images of scarring diseases showed varying degrees of disruption to the skin architecture. OCT characteristics were identified for each lesion type. Hypertrophic scars displayed an increased vascularity and signal-rich bands correlating to excessive collagen deposition. Keloids depicted a disarray of hyper-reflective areas primarily located in the upper dermis. Additionally, the dermis displayed a heterogeneous morphology without indications of any vascular supply or lymphatic network. In contrast to keloids, scleroderma displayed a more cohesive backscattering indicating a difference in density of collagen or other dermal structures. OCT images demonstrated no significant differences between mean density measurements in OCT images of scleroderma, keloid and healthy skin (P = 0.07). CONCLUSION: The OCT imaging appears to identify different scarring mechanisms, and therefore be of potential use in the assessment of outcomes following non-invasive therapy of e.g. early or progressive lesions.

  1. Integral ceramic superstructure evaluation using time domain optical coherence tomography

    Science.gov (United States)

    Sinescu, Cosmin; Bradu, Adrian; Topala, Florin I.; Negrutiu, Meda Lavinia; Duma, Virgil-Florin; Podoleanu, Adrian G.

    2014-02-01

    Optical Coherence Tomography (OCT) is a non-invasive low coherence interferometry technique that includes several technologies (and the corresponding devices and components), such as illumination and detection, interferometry, scanning, adaptive optics, microscopy and endoscopy. From its large area of applications, we consider in this paper a critical aspect in dentistry - to be investigated with a Time Domain (TD) OCT system. The clinical situation of an edentulous mandible is considered; it can be solved by inserting 2 to 6 implants. On these implants a mesostructure will be manufactured and on it a superstructure is needed. This superstructure can be integral ceramic; in this case materials defects could be trapped inside the ceramic layers and those defects could lead to fractures of the entire superstructure. In this paper we demonstrate that a TD-OCT imaging system has the potential to properly evaluate the presence of the defects inside the ceramic layers and those defects can be fixed before inserting the prosthesis inside the oral cavity. Three integral ceramic superstructures were developed by using a CAD/CAM technology. After the milling, the ceramic layers were applied on the core. All the three samples were evaluated by a TD-OCT system working at 1300 nm. For two of the superstructures evaluated, no defects were found in the most stressed areas. The third superstructure presented four ceramic defects in the mentioned areas. Because of those defects the superstructure may fracture. The integral ceramic prosthesis was send back to the dental laboratory to fix the problems related to the material defects found. Thus, TD-OCT proved to be a valuable method for diagnosing the ceramic defects inside the integral ceramic superstructures in order to prevent fractures at this level.

  2. Characterization of dynamic physiology of the bladder by optical coherence tomography

    Science.gov (United States)

    Yuan, Zhijia; Keng, Kerri; Pan, Rubin; Ren, Hugang; Du, Congwu; Kim, Jason; Pan, Yingtian

    2012-03-01

    Because of its high spatial resolution and noninvasive imaging capabilities, optical coherence tomography has been used to characterize the morphological details of various biological tissues including urinary bladder and to diagnose their alternations (e.g., cancers). In addition to static morphology, the dynamic features of tissue morphology can provide important information that can be used to diagnose the physiological and functional characteristics of biological tissues. Here, we present the imaging studies based on optical coherence tomography to characterize motion related physiology and functions of rat bladder detrusor muscles and compared the results with traditional biomechanical measurements. Our results suggest that optical coherence tomography is capable of providing quantitative evaluation of contractile functions of intact bladder (without removing bladder epithelium and connective tissue), which is potentially of more clinical relevance for future clinical diagnosis - if incorporated with cystoscopic optical coherence tomography.

  3. Cystoid macular edema diagnosed with optical coherent tomography in patients operated on from cataract

    International Nuclear Information System (INIS)

    Refers frequency of cystoid macular edema diagnosed with optical coherence tomography in patients operated on from senile cataract at 'Ramon Pando Ferrer' Cuban Institute of Ophthalmology in the period from December 2006 to February 2007

  4. Optical coherence tomography: A new strategy to image planarian regeneration

    Science.gov (United States)

    Lin, Yu-Sheng; Chu, Chin-Chou; Lin, Jen-Jen; Chang, Chien-Cheng; Wang, Chun-Chieh; Wang, Chiao-Yin; Tsui, Po-Hsiang

    2014-01-01

    The planarian is widely used as a model for studying tissue regeneration. In this study, we used optical coherence tomography (OCT) for the real-time, high-resolution imaging of planarian tissue regeneration. Five planaria were sliced transversely to produce 5 head and 5 tail fragments. During a 2-week regeneration period, OCT images of the planaria were acquired to analyze the signal attenuation rates, intensity ratios, and image texture features (including contrast, correlation, homogeneity, energy, and entropy) to compare the primitive and regenerated tissues. In the head and tail fragments, the signal attenuation rates of the regenerated fragments decreased from ?0.2?dB/?m to ?0.05?dB/?m, between Day 1 and Day 6, and then increased to ?0.2?dB/?m on Day 14. The intensity ratios decreased to approximately 0.8 on Day 6, and increased to between 0.8 and 0.9 on Day 14. The texture parameters of contrast, correlation, and homogeneity exhibited trends similar to the signal attenuation rates and intensity ratios during the planarian regeneration. The proposed OCT parameters might provide biological information regarding cell apoptosis and the formation of a mass of new cells during planarian regeneration. Therefore, OCT imaging is a potentially effective method for planarian studies. PMID:25204535

  5. Dispersion phenomenon and a compensation method in optical coherence tomography

    Science.gov (United States)

    Tao, Tao; Liao, Ran; Lu, Jun; Zhu, Hongyi

    2006-01-01

    The resolution of optical coherence tomography (OCT) depends on the spectral properties of the light sources used in OCT systems. The minimum distance that can be resolved by this technique is inversely proportional to the spectral width of the light source. Using broadband light sources, ultrahigh-resolution OCT can achieve axial image resolutions on the few micron scale. However, dispersion is known to increase the width of the envelope of the OCT signal and to reduce the resolution of OCT because different wavelengths of a broadband light source have different velocities in dispersive media. In the present paper, a super-luminescent diode (SLD) source is used to characterize the dispersion of different samples. The center wavelength of the light source is 845nm and spectral width is 26nm. A 30mm thick BK7 glass slab is tested. Based on the measured source spectrum, the broadened signals are calculated with the specific dispersion coefficients of different materials. The calculated signals are compared with the results measured in the experiments. A general numerical dispersion compensation method is present, which can both be applied in time domain and in frequency domain. Using this automatic iterative optimization method, the unbroadened signal can be regenerated with high resolution.

  6. Optical coherence tomography for imaging of skin and skin diseases

    DEFF Research Database (Denmark)

    Mogensen, Mette; Thrane, Lars

    2009-01-01

    Optical coherence tomography (OCT) is an emerging imaging technology based on light reflection. It provides real-time images with up to 2-mm penetration into the skin and a resolution of approximately 10 ?m. It is routinely used in ophthalmology. The normal skin and its appendages have been studied, as have many diseases. The method can provide accurate measures of epidermal and nail changes in normal tissue. Skin cancer and other tumors, as well as inflammatory diseases, have been studied and good agreement found between OCT images and histopathological architecture. OCT also allows noninvasive monitoring of morphologic changes in skin diseases and may have a particular role in the monitoring of medical treatment of nonmelanoma skin cancer. The technology is however still evolving and continued technological development will necessitate an ongoing evaluation of its diagnostic accuracy. Several technical solutions are being pursued to further improve the quality of the images and the data provided, and OCT isbeing integrated in multimodal imaging devices that would potentially be able to provide a quantum leap to the imaging of skin in vivo.

  7. Spectral estimation optical coherence tomography for axial super-resolution.

    Science.gov (United States)

    Liu, Xinyu; Chen, Si; Cui, Dongyao; Yu, Xiaojun; Liu, Linbo

    2015-10-01

    The depth reflectivity profile of Fourier domain optical coherence tomography (FD-OCT) is estimated from the inverse Fourier transform of the spectral interference signals (interferograms). As a result, the axial resolution is fundamentally limited by the coherence length of the light source. We demonstrate that using the autoregressive spectral estimation technique instead of the inverse Fourier transform, to analyze the spectral interferograms can improve the axial resolution. We name this method spectral estimation OCT (SE-OCT). SE-OCT breaks the coherence length limitation and improves the axial resolution by a factor of up to 4.7 compared with FD-OCT. Furthermore, SE-OCT provides complete sidelobe suppression in the depth point-spread function, further improving the image quality. We demonstrate that these technical advances enables clear identification of corneal endothelium anatomical details ex vivo that cannot be identified using the corresponding FD-OCT. Given that SE-OCT can be implemented in the FD-OCT devices without any hardware changes, the new capabilities provided by SE-OCT are likely to offer immediate improvements to the diagnosis and management of diseases based on OCT imaging. PMID:26480165

  8. OCT y fototoxicidad macular / Optical coherence tomography and macular phototoxicity

    Scientific Electronic Library Online (English)

    N.A., Rodríguez-Marco; J., Andonegui-Navarro; E., Compains-Silva; A., Rebollo-Aguayo; D., Aliseda-Pérez-de-Madrid; M., Aranguren-Laflin.

    2008-04-01

    Full Text Available Caso clínico: Se realiza una exploración ocular y tomografía de coherencia óptica (OCT) en tres pacientes con lesiones fototóxicas retinianas. Las angiografías fluoresceínicas muestran un defecto ventana. La OCT muestra hiporreflectividad en la porción externa de la fóvea y fragmentación de las capa [...] s más internas entre la porción interna de los fotorreceptores y los segmentos externos. Discusión: Las lesiones retinianas tras exposición a la luz aparecen precozmente mostrando diferentes patrones en la OCT. La OCT sugiere que la disminución de visión asocia una lesión de fotorreceptores y epitelio pigmentario retiniano (EPR). La OCT es útil para objetivar la retinopatía fototóxica donde los cambios oftalmoscópicos pueden estar ausentes o ser mínimos. Abstract in english Case report: Ocular examinations and optical coherence tomography (OCT) were performed in three patients with retinal phototoxicity lesions. Fluorescein angiography depicted a window defect. OCT exhibited hyporeflectivity at the outer foveal retina and fragmentation of the inner reflective layers, c [...] orresponding to the junction between the inner and outer photoreceptor segments. Discussion: Retinal damage after light exposure has a rapid onset and shows different patterns in OCT examination. OCT findings suggest that decreased visual acuity may be associated with full-thickness photoreceptors and retinal pigment epithelium (RPE) involvement. OCT is a useful tool for objective assessment of retinal pathology in phototoxicity cases where fundus changes may be minimal or absent.

  9. NIR time domain diffuse optical tomography experiments on human forearm

    Science.gov (United States)

    Zhao, Huijuan; Gao, Feng; Tanikawa, Yukari; Homma, Kazuhiro; Yamada, Yukio

    2003-07-01

    To date, the applications of near infrared (NIR) diffusion optical tomography (DOT) are mostly focused on the potential of imaging woman breast, human head hemodynamics and neonatal head. For the neonates, who are suffered from ischaemia or hemorrhages in brain, bedside monitoring of the cerebral perfusion situation, e.g., the blood oxygen saturation and blood volume, is necessary for avoiding permanent injure. NIR DOT is on the promising tools because it is noninvasive, smaller in size, and moveable. Prior to achieving the ultimate goal of imaging infant brain and woman breast using DOT, in this paper, the developed methodologies are justified by imaging in vivo human forearms. The absolute absorption- and scattering-coefficient images revealed the inner structure of the forearm and the bones were clearly distinguished from the muscle. The differential images showed the changes in oxy-hemoglobin, deoxy-hemoglobin and blood volume during the hand-gripping exercises, which are consistent with the physiological process reported on literatures.

  10. Heartbeat OCT: in vivo intravascular megahertz-optical coherence tomography.

    Science.gov (United States)

    Wang, Tianshi; Pfeiffer, Tom; Regar, Evelyn; Wieser, Wolfgang; van Beusekom, Heleen; Lancee, Charles T; Springeling, Geert; Krabbendam, Ilona; van der Steen, Antonius F W; Huber, Robert; van Soest, Gijs

    2015-12-01

    Cardiac motion artifacts, non-uniform rotational distortion and undersampling affect the image quality and the diagnostic impact of intravascular optical coherence tomography (IV-OCT). In this study we demonstrate how these limitations of IV-OCT can be addressed by using an imaging system that we called "Heartbeat OCT", combining a fast Fourier Domain Mode Locked laser, fast pullback, and a micromotor actuated catheter, designed to examine a coronary vessel in less than one cardiac cycle. We acquired in vivo data sets of two coronary arteries in a porcine heart with both Heartbeat OCT, working at 2.88 MHz A-line rate, 4000 frames/s and 100 mm/s pullback speed, and with a commercial system. The in vivo results show that Heartbeat OCT provides faithfully rendered, motion-artifact free, fully sampled vessel wall architecture, unlike the conventional IV-OCT data. We present the Heartbeat OCT system in full technical detail and discuss the steps needed for clinical translation of the technology. PMID:26713214

  11. Methods for monitoring erosion using optical coherence tomography

    Science.gov (United States)

    Chan, Kenneth H.; Chan, Andrew C.; Darling, Cynthia L.; Fried, Daniel

    Since optical coherence tomography is well suited for measuring small dimensional changes on tooth surfaces it has great potential for monitoring tooth erosion. The purpose of this study was to explore different approaches for monitoring the erosion of enamel. Application of an acid resistant varnish to protect the tooth surface from erosion has proven effective for providing a reference surface for in vitro studies but has limited potential for in vivo studies. Two approaches which can potentially be used in vivo were investigated. The first approach is to measure the remaining enamel thickness, namely the distance from the tooth surface to the dentinal-enamel junction (DEJ). The second more novel approach is to irradiate the surface with a carbon dioxide laser to create a reference layer which resists erosion. Measuring the remaining enamel thickness proved challenging since the surface roughening and subsurface demineralization that commonly occurs during the erosion process can prevent resolution of the underlying DEJ. The areas irradiated by the laser manifested lower rates of erosion compared to the non-irradiated areas and this method appears promising but it is highly dependent on the severity of the acid challenge.

  12. Process monitoring of additive manufacturing by using optical tomography

    Science.gov (United States)

    Zenzinger, Guenter; Bamberg, Joachim; Ladewig, Alexander; Hess, Thomas; Henkel, Benjamin; Satzger, Wilhelm

    2015-03-01

    Parts fabricated by means of additive manufacturing are usually of complex shape and owing to the fabrication procedure by using selective laser melting (SLM), potential defects and inaccuracies are often very small in lateral size. Therefore, an adequate quality inspection of such parts is rather challenging, while non-destructive-techniques (NDT) are difficult to realize, but considerable efforts are necessary in order to ensure the quality of SLM-parts especially used for aerospace components. Thus, MTU Aero Engines is currently focusing on the development of an Online Process Control system which monitors and documents the complete welding process during the SLM fabrication procedure. A high-resolution camera system is used to obtain images, from which tomographic data for a 3dim analysis of SLM-parts are processed. From the analysis, structural irregularities and structural disorder resulting from any possible erroneous melting process become visible and may be allocated anywhere within the 3dim structure. Results of our optical tomography (OT) method as obtained on real defects are presented.

  13. Optical coherence tomography for nondestructive evaluation of fuel rod degradation

    Energy Technology Data Exchange (ETDEWEB)

    Renshaw, Jeremy B., E-mail: jrenshaw@epri.com [Electric Power Research Institute, 1300 West WT Harris Blvd., Charlotte, NC 28262 (United States); Jenkins, Thomas P., E-mail: tjenkins@metrolaserinc.com; Buckner, Benjamin D., E-mail: tjenkins@metrolaserinc.com [MetroLaser, Inc., 22941 Mill Creek Drive, Laguna Hills, CA 92653 (United States); Friend, Brian [AREVA, Inc., 3315 Old Forest Road, Lynchburg, VA 24501 (United States)

    2015-03-31

    Nuclear power plants regularly inspect fuel rods to ensure safe and reliable operation. Excessive corrosion can cause fuel failures which can have significant repercussions for the plant, including impacts on plant operation, worker exposure to radiation, and the plant's INPO rating. While plants typically inspect for fuel rod corrosion using eddy current techniques, these techniques have known issues with reliability in the presence of tenacious, ferromagnetic crud layers that can deposit during operation, and the nondestructive evaluation (NDE) inspection results can often be in error by a factor of 2 or 3. For this reason, alternative measurement techniques, such as Optical Coherence Tomography (OCT), have been evaluated that are not sensitive to the ferromagnetic nature of the crud. This paper demonstrates that OCT has significant potential to characterize the thickness of crud layers that can deposit on the surfaces of fuel rods during operation. Physical trials have been performed on simulated crud samples, and the resulting data show an apparent correlation between the crud layer thickness and the OCT signal.

  14. Optical Coherence Tomography Angiography in Central Serous Chorioretinopathy

    Science.gov (United States)

    Costanzo, Eliana; Cohen, Salomon Yves; Miere, Alexandra; Querques, Giuseppe; Capuano, Vittorio; Semoun, Oudy; El Ameen, Ala'a; Oubraham, Hassiba; Souied, Eric H.

    2015-01-01

    Purpose. To analyze optical coherence tomography angiography (OCTA) findings in eyes with central serous chorioretinopathy (CSC) and to compare them with those obtained with multimodal imaging. Methods. A series of consecutive patients diagnosed with CSC, underwent OCTA and multimodal imaging, including spectral domain OCT, fluorescein, and indocyanine green angiography. OCTA images were performed at three main depth intervals: automatically segmented outer retina, manually adjusted outer retina, and automatically segmented choriocapillaris. Results. Thirty-three eyes of 32 consecutive patients were analyzed. OCTA showed 3 main anomalies at the choriocapillaris: the presence of dark areas (19/33 eyes) which were frequently associated with serous retinal detachment, presence of dark spots (7/33 eyes) which were frequently associated with retinal pigment epithelium detachment, and presence of abnormal vessels (12/33 eyes) which were frequently, but not systematically, associated with choroidal neovascularization, as confirmed by multimodal imaging. Conclusions. OCTA revealed dark areas and dark spots, which were commonly observed. An abnormal choroidal pattern was also observed in one-third of cases, even when multimodal imaging did not evidence any choroidal neovascularization. Abnormal choroidal vessels should be interpreted with caution, and we could assume that this pathological choroidal vascular pattern observed in many CSC cases could be distinct from CNV. PMID:26634150

  15. Process monitoring of additive manufacturing by using optical tomography

    International Nuclear Information System (INIS)

    Parts fabricated by means of additive manufacturing are usually of complex shape and owing to the fabrication procedure by using selective laser melting (SLM), potential defects and inaccuracies are often very small in lateral size. Therefore, an adequate quality inspection of such parts is rather challenging, while non-destructive-techniques (NDT) are difficult to realize, but considerable efforts are necessary in order to ensure the quality of SLM-parts especially used for aerospace components. Thus, MTU Aero Engines is currently focusing on the development of an Online Process Control system which monitors and documents the complete welding process during the SLM fabrication procedure. A high-resolution camera system is used to obtain images, from which tomographic data for a 3dim analysis of SLM-parts are processed. From the analysis, structural irregularities and structural disorder resulting from any possible erroneous melting process become visible and may be allocated anywhere within the 3dim structure. Results of our optical tomography (OT) method as obtained on real defects are presented

  16. Determination of dental decay rates with optical coherence tomography

    International Nuclear Information System (INIS)

    We report the use of optical coherence tomography (OCT) to detect and quantify demineralization process induced by S. mutans biofilm in third molars human teeth. Artificial lesions were induced by a S. mutans microbiological culture and the samples (N = 50) were divided into groups according to the demineralization time: 3, 5, 7, 9, and 11 days. The OCT system was implemented using a light source delivering an average power of 96 ?W in the sample arm, and spectral characteristics allowing 23 ?m of axial resolution. The images were produced with lateral scans step of 10 ?m and analyzed individually. As a result of the evaluation of theses images, lesion depth was calculated as function of demineralization time. The depth of the lesion in the root dentine increased from 70 ?m to 230 ?m (corrected by the enamel refraction index, 1.62 @ 856 nm), depending of exposure time. The lesion depth in root dentine was correlated to demineralization time, showing that it follows a geometrical progression like a bacteria growth law

  17. Assessment of transcutaneous vaccine delivery by optical coherence tomography

    International Nuclear Information System (INIS)

    Immunization is one of the most efficient and cost-effective means for the prevention of diseases. The latest trend for inducing protective immunity is topical application of vaccines to intact skin rather than invasive administration via injection. Apart from being a non-invasive route of drug delivery, skin itself also offers advantages through the presence of cells of the immune system in both the dermis and epidermis. However, vaccine penetration through the outermost layers of skin is limited by the barrier provided by the Stratum corneum. In the current study utilizing conventional Optical Coherence Tomography (OCT) we investigate the transcutaneous delivery of a nano- particulate peptide vaccine into mouse skin in vivo. We demonstrate that a front of molecular diffusion within the skin can be clearly observed by using cross-correlations of successive 2D OCT images. Thus, OCT provides a unique tool for quantitative assessment of dynamics of diffusion of drugs, target compounds, analytes, cosmetics and various chemical agents in biological tissues in vivo

  18. Process monitoring of additive manufacturing by using optical tomography

    Energy Technology Data Exchange (ETDEWEB)

    Zenzinger, Guenter, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de; Bamberg, Joachim, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de; Ladewig, Alexander, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de; Hess, Thomas, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de; Henkel, Benjamin, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de; Satzger, Wilhelm, E-mail: guenter.zenzinger@mtu.de, E-mail: alexander.ladewig@mtu.de [MTU Aero Engines AG, Dachauerstrasse 665, 80995 Munich (Germany)

    2015-03-31

    Parts fabricated by means of additive manufacturing are usually of complex shape and owing to the fabrication procedure by using selective laser melting (SLM), potential defects and inaccuracies are often very small in lateral size. Therefore, an adequate quality inspection of such parts is rather challenging, while non-destructive-techniques (NDT) are difficult to realize, but considerable efforts are necessary in order to ensure the quality of SLM-parts especially used for aerospace components. Thus, MTU Aero Engines is currently focusing on the development of an Online Process Control system which monitors and documents the complete welding process during the SLM fabrication procedure. A high-resolution camera system is used to obtain images, from which tomographic data for a 3dim analysis of SLM-parts are processed. From the analysis, structural irregularities and structural disorder resulting from any possible erroneous melting process become visible and may be allocated anywhere within the 3dim structure. Results of our optical tomography (OT) method as obtained on real defects are presented.

  19. Quality assessment for spectral domain optical coherence tomography (OCT) images

    Science.gov (United States)

    Liu, Shuang; Paranjape, Amit S.; Elmaanaoui, Badr; Dewelle, Jordan; Rylander, H. Grady, III; Markey, Mia K.; Milner, Thomas E.

    2009-02-01

    Retinal nerve fiber layer (RNFL) thickness, a measure of glaucoma progression, can be measured in images acquired by spectral domain optical coherence tomography (OCT). The accuracy of RNFL thickness estimation, however, is affected by the quality of the OCT images. In this paper, a new parameter, signal deviation (SD), which is based on the standard deviation of the intensities in OCT images, is introduced for objective assessment of OCT image quality. Two other objective assessment parameters, signal to noise ratio (SNR) and signal strength (SS), are also calculated for each OCT image. The results of the objective assessment are compared with subjective assessment. In the subjective assessment, one OCT expert graded the image quality according to a three-level scale (good, fair, and poor). The OCT B-scan images of the retina from six subjects are evaluated by both objective and subjective assessment. From the comparison, we demonstrate that the objective assessment successfully differentiates between the acceptable quality images (good and fair images) and poor quality OCT images as graded by OCT experts. We evaluate the performance of the objective assessment under different quality assessment parameters and demonstrate that SD is the best at distinguishing between fair and good quality images. The accuracy of RNFL thickness estimation is improved significantly after poor quality OCT images are rejected by automated objective assessment using the SD, SNR, and SS.

  20. The potential of optical coherence tomography for diagnosing meniscal pathology

    International Nuclear Information System (INIS)

    Meniscal tears are often associated with anterior cruciate ligament (ACL) injury and may lead to pain and discomfort in humans. Maximal preservation of meniscal tissue is highly desirable to mitigate the progression of osteoarthritis. Guidelines of which meniscal tears are amenable to repair and what part of damaged tissues should be removed are elusive and lacking consensus. Images of microstructural changes in meniscus would potentially guide the surgeons to manage the meniscal tears better, but the resolution of current diagnostic techniques is limited for this application. In this study, we demonstrated the feasibility of using optical coherence tomography (OCT) for the diagnosis of meniscal pathology. Torn medial menisci were collected from dogs with ACL insufficiency. The torn meniscus was divided into three tissue samples and scanned by OCT and scanning electron microscopy (SEM). OCT and SEM images of torn menisci were compared. Each sample was evaluated for gross and microstructural abnormalities and reduction or loss of birefringence from the OCT images. The abnormalities detected with OCT were described for each type of tear. OCT holds promise in non-destructive and fast assessment of microstructural changes and tissue birefringence of meniscal tears. Future development of intraoperative OCT may help surgeons in the decision making of meniscal treatment

  1. The potential of optical coherence tomography for diagnosing meniscal pathology

    Science.gov (United States)

    Hang-Yin Ling, Carrie; Pozzi, Antonio; Thieman, Kelley M.; Tonks, Catherine A.; Guo, Shuguang; Xie, Huikai; Horodyski, MaryBeth

    2010-04-01

    Meniscal tears are often associated with anterior cruciate ligament (ACL) injury and may lead to pain and discomfort in humans. Maximal preservation of meniscal tissue is highly desirable to mitigate the progression of osteoarthritis. Guidelines of which meniscal tears are amenable to repair and what part of damaged tissues should be removed are elusive and lacking consensus. Images of microstructural changes in meniscus would potentially guide the surgeons to manage the meniscal tears better, but the resolution of current diagnostic techniques is limited for this application. In this study, we demonstrated the feasibility of using optical coherence tomography (OCT) for the diagnosis of meniscal pathology. Torn medial menisci were collected from dogs with ACL insufficiency. The torn meniscus was divided into three tissue samples and scanned by OCT and scanning electron microscopy (SEM). OCT and SEM images of torn menisci were compared. Each sample was evaluated for gross and microstructural abnormalities and reduction or loss of birefringence from the OCT images. The abnormalities detected with OCT were described for each type of tear. OCT holds promise in non-destructive and fast assessment of microstructural changes and tissue birefringence of meniscal tears. Future development of intraoperative OCT may help surgeons in the decision making of meniscal treatment.

  2. Optical coherence tomography for nondestructive evaluation of fuel rod degradation

    Science.gov (United States)

    Renshaw, Jeremy B.; Jenkins, Thomas P.; Buckner, Benjamin D.; Friend, Brian

    2015-03-01

    Nuclear power plants regularly inspect fuel rods to ensure safe and reliable operation. Excessive corrosion can cause fuel failures which can have significant repercussions for the plant, including impacts on plant operation, worker exposure to radiation, and the plant's INPO rating. While plants typically inspect for fuel rod corrosion using eddy current techniques, these techniques have known issues with reliability in the presence of tenacious, ferromagnetic crud layers that can deposit during operation, and the nondestructive evaluation (NDE) inspection results can often be in error by a factor of 2 or 3. For this reason, alternative measurement techniques, such as Optical Coherence Tomography (OCT), have been evaluated that are not sensitive to the ferromagnetic nature of the crud. This paper demonstrates that OCT has significant potential to characterize the thickness of crud layers that can deposit on the surfaces of fuel rods during operation. Physical trials have been performed on simulated crud samples, and the resulting data show an apparent correlation between the crud layer thickness and the OCT signal.

  3. Tissue thickness calculation in ocular optical coherence tomography.

    Science.gov (United States)

    Alonso-Caneiro, David; Read, Scott A; Vincent, Stephen J; Collins, Michael J; Wojtkowski, Maciej

    2016-02-01

    Thickness measurements derived from optical coherence tomography (OCT) images of the eye are a fundamental clinical and research metric, since they provide valuable information regarding the eye's anatomical and physiological characteristics, and can assist in the diagnosis and monitoring of numerous ocular conditions. Despite the importance of these measurements, limited attention has been given to the methods used to estimate thickness in OCT images of the eye. Most current studies employing OCT use an axial thickness metric, but there is evidence that axial thickness measures may be biased by tilt and curvature of the image. In this paper, standard axial thickness calculations are compared with a variety of alternative metrics for estimating tissue thickness. These methods were tested on a data set of wide-field chorio-retinal OCT scans (field of view (FOV) 60° x 25°) to examine their performance across a wide region of interest and to demonstrate the potential effect of curvature of the posterior segment of the eye on the thickness estimates. Similarly, the effect of image tilt was systematically examined with the same range of proposed metrics. The results demonstrate that image tilt and curvature of the posterior segment can affect axial tissue thickness calculations, while alternative metrics, which are not biased by these effects, should be considered. This study demonstrates the need to consider alternative methods to calculate tissue thickness in order to avoid measurement error due to image tilt and curvature. PMID:26977367

  4. Retinal and choroidal intravascular spectral-domain optical coherence tomography

    DEFF Research Database (Denmark)

    Willerslev, Anne; Li, Xiao

    2014-01-01

    Purpose:? To examine retinal and choroidal blood vessels using spectral-domain optical coherence tomography (SD-OCT). Methods:? Retrospective case series. Results:? Scans through retinal blood vessels in healthy subjects demonstrated vessel wall reflexes and a tri-layer profile of the blood column on longitudinal scans and a figure-of-eight configuration on cross-sectional scans. Intravascular reflectivity decreased with increasingly oblique angles of observation and was absent when blood flow was parallel to the line of sight. The high blood flow in the choroidal vessels in healthy subjects and the low flow in the retinal vessels in patients with ocular ischaemic syndrome and central retinal artery occlusion were both associated with lower reflectivity of the blood and an unstructured intravascular SD-OCT profile. Discussion:? This qualitative in vivo study found a characteristically structured SD-OCT profile of the blood column in retinal vessels with normal blood flow. Both structure and total reflectivityfaded when blood flow was lower or higher than normal or at oblique angles to the line of sight. In conclusion, SD-OCT scans of the vessels in the posterior pole of the eye may assist the clinical assessment of gross abnormalities of ocular blood flow, e.g. in carotid artery stenosis.

  5. CHOROIDAL THICKNESS IN PATIENTS WITH DIABETIC RETINOPATHY ANALYZED BY SPECTRAL-DOMAIN OPTICAL COHERENCE TOMOGRAPHY

    OpenAIRE

    Regatieri, Caio V.; Branchini, Lauren; CARMODY, JILL; Fujimoto, James G.; Duker, Jay S

    2012-01-01

    Purpose: This study was designed to examine choroidal thickness in patients with diabetes using spectral-domain optical coherence tomography. Methods: Forty-nine patients (49 eyes) with diabetes and 24 age-matched normal subjects underwent high-definition raster scanning using spectral-domain optical coherence tomography with frame enhancement software. Patients with diabetes were classified into 3 groups: 11 patients with mild or moderate nonproliferative diabetic retinopathy and no macul...

  6. Magnetic induction tomography using an all-optical ^87Rb atomic magnetometer

    Science.gov (United States)

    Wickenbrock, Arne; Jurgilas, Sarunas; Dow, Albert; Marmugi, Luca; Renzoni, Ferruccio

    2014-11-01

    We demonstrate Magnetic Induction Tomography (MIT) with an all-optical atomic magnetometer. Our instrument creates a conductivity map of conductive objects. Both shape and size of the imaged samples compare very well with the actual shape and size. Given the potential of all-optical atomic magnetometers for miniaturization and extreme sensitivity, the proof-of-principle presented here opens up promising avenues in the development of instrumentation for magnetic induction tomography.

  7. Magnetic induction tomography using an all-optical $^{87}$Rb atomic magnetometer

    CERN Document Server

    Wickenbrock, Arne; Dow, Albert; Marmugi, Luca; Renzoni, Ferruccio

    2014-01-01

    We demonstrate Magnetic Induction Tomography (MIT) with an all-optical atomic magnetometer. Our instrument creates a conductivity map of conductive objects. Both shape and size of the imaged samples compare very well with the actual shape and size. Given the potential of all-optical atomic magnetometers for miniaturization and extreme sensitivity, the proof-of-principle presented here opens up promising avenues in the development of instrumentation for magnetic induction tomography.

  8. All fiber optics circular-state swept source polarization-sensitive optical coherence tomography.

    Science.gov (United States)

    Lin, Hermann; Kao, Meng-Chun; Lai, Chih-Ming; Huang, Jyun-Cin; Kuo, Wen-Chuan

    2014-02-01

    A swept source (SS)-based circular-state (CS) polarization-sensitive optical coherence tomography (PS-OCT) constructed entirely with polarization-maintaining fiber optics components is proposed with the experimental verification. By means of the proposed calibration scheme, bulk quarter-wave plates can be replaced by fiber optics polarization controllers to, therefore, realize an all-fiber optics CS SSPS-OCT. We also present a numerical dispersion compensation method, which can not only enhance the axial resolution, but also improve the signal-to-noise ratio of the images. We demonstrate that this compact and portable CS SSPS-OCT system with an accuracy comparable to bulk optics systems requires less stringent lens alignment and can possibly serve as a technology to realize PS-OCT instrument for clinical applications (e.g., endoscopy). The largest deviations in the phase retardation (PR) and fast-axis (FA) angle due to sample probe in the linear scanning and a rotation angle smaller than 65 deg were of the same order as those in stationary probe setups. The influence of fiber bending on the measured PR and FA is also investigated. The largest deviations of the PR were 3.5 deg and the measured FA change by ~12 to 21 deg. Finally, in vivo imaging of the human fingertip and nail was successfully demonstrated with a linear scanning probe. PMID:24084890

  9. Voice coil based robust and miniature optical delay for multiple reference optical coherence tomography

    Science.gov (United States)

    Dsouza, Roshan; Subhash, Hrebesh; Neuhaus, Kai; Hogan, Josh; Wilson, Carol; Leahy, Martin

    2014-02-01

    Multiple reference optical coherence tomography (MR-OCT) is a recently developed time-domain interferometeric imaging platform, which promises to fit into robust, cost-effective designs that are virtually solid state. An optical delay is created by the reference mirror which is mounted on a piezo-electric transducer (PZT) and the key element of MR-OCT technology is the presence of a partial mirror in front of the reference mirror. However, the limited axial displacement range at higher scanning-frequencies are a limitation of a PZT-based optical delay. Moreover, PZT-based actuators require a relatively high operational voltage and are expensive. In this paper we present a voice coil actuator as an alternative to a PZT-based optical delay. Voice coil actuators are light in weight, inexpensive and offer other advantages such as zero hysteresis, low operational voltage and a long life. We demonstrate a voice coil actuator as a feasible alternative to PZT-based actuators for the purpose of creating an optical delay, which can provide fast and precise axial displacements at high scanning rates.

  10. An evaluation of meniscal collagenous structure using optical projection tomography

    International Nuclear Information System (INIS)

    The collagenous structure of menisci is a complex network of circumferentially oriented fascicles and interwoven radially oriented tie-fibres. To date, examination of this micro- architecture has been limited to two-dimensional imaging techniques. The purpose of this study was to evaluate the ability of the three-dimensional imaging technique; optical projection tomography (OPT), to visualize the collagenous structure of the meniscus. If successful, this technique would be the first to visualize the macroscopic orientation of collagen fascicles in 3-D in the meniscus and could further refine load bearing mechanisms in the tissue. OPT is an imaging technique capable of imaging samples on the meso-scale (1-10 mm) at a micro-scale resolution. The technique, similar to computed tomography, takes two-dimensional images of objects from incremental angles around the object and reconstructs them using a back projection algorithm to determine three-dimensional structure. Bovine meniscal samples were imaged from four locations (outer main body, femoral surface, tibial surface and inner main body) to determine the variation in collagen orientation throughout the tissue. Bovine stifles (n = 2) were obtained from a local abattoir and the menisci carefully dissected. Menisci were fixed in methanol and subsequently cut using a custom cutting jig (n = 4 samples per meniscus). Samples were then mounted in agarose, dehydrated in methanol and subsequently cleared using benzyl alcohol benzyl benzoate (BABB) and imaged using OPT. Results indicate circumferential, radial and oblique collagenous orientations at the contact surfaces and in the inner third of the main body of the meniscus. Imaging identified fascicles ranging from 80-420 ?m in diameter. Transition zones where fascicles were found to have a woven or braided appearance were also identified. The outer-third of the main body was composed of fascicles oriented predominantly in the circumferential direction. Blood vessels were also visualized using this technique, as their elastin content fluoresces more brightly than collagen at the 425 nm wavelength used by the OPT scanner. OPT was capable of imaging the collagenous structure, as well as blood vessels in the bovine meniscus. Collagenous structure variability, including transition zones between structural regions not previously described in the meniscus, was identified using this novel technique

  11. Automatic segmentation of the optic nerve head for deformation measurements in video rate optical coherence tomography

    Science.gov (United States)

    Hidalgo-Aguirre, Maribel; Gitelman, Julian; Lesk, Mark Richard; Costantino, Santiago

    2015-11-01

    Optical coherence tomography (OCT) imaging has become a standard diagnostic tool in ophthalmology, providing essential information associated with various eye diseases. In order to investigate the dynamics of the ocular fundus, we present a simple and accurate automated algorithm to segment the inner limiting membrane in video-rate optic nerve head spectral domain (SD) OCT images. The method is based on morphological operations including a two-step contrast enhancement technique, proving to be very robust when dealing with low signal-to-noise ratio images and pathological eyes. An analysis algorithm was also developed to measure neuroretinal tissue deformation from the segmented retinal profiles. The performance of the algorithm is demonstrated, and deformation results are presented for healthy and glaucomatous eyes.

  12. Numerical simulation of x-ray luminescence optical tomography for small-animal imaging

    OpenAIRE

    Li, ChangQing; Martínez-Dávalos, Arnulfo; Cherry, Simon R.

    2014-01-01

    X-ray luminescence optical tomography (XLOT) is an emerging hybrid imaging modality in which x-ray excitable particles (phosphor particles) emit optical photons when stimulated with a collimated x-ray beam. XLOT can potentially combine the high sensitivity of optical imaging with the high spatial resolution of x-ray imaging. For reconstruction of XLOT data, we compared two reconstruction algorithms, conventional filtered backprojection (FBP) and a new algorithm, x-ray luminescence optical tom...

  13. Theoretical study of Acousto-optical coherence tomography using random phase jumps on US and light

    OpenAIRE

    Lesaffre, Max; Farahi, Salma; Boccara, A.C.; Ramaz, François; Gross, Michel

    2011-01-01

    Acousto-Optical Coherence Tomography (AOCT) is variant of Acousto Optic Imaging (called also ultrasonic modulation imaging) that makes possible to get z resolution with acoustic and optic Continuous Wave (CW) beams. We describe here theoretically the AOCT e ect, and we show that the Acousto Optic tagged photons remains coherent if they are generated within a speci c z region of the sample. We quantify the z selectivity for both the tagged photon eld, and for the M. Lesa re e...

  14. Common-Path Optical Coherence Tomography for Biomedical Imaging and Sensing

    OpenAIRE

    Kang, Jin U; Han, Jae-Ho; Liu, Xuan; Zhang, Kang

    2010-01-01

    This paper describes a development of a fiber optic common-path optical coherence tomography (OCT) based imaging and guided system that possess ability to reliably identify optically transparent targets that are on the micron scale; ability to maintain a precise and safe position from the target; ability to provide spectroscopic imaging; ability to imaging biological target in 3-D. The system is based on a high resolution fiber optic Common-Path OCT (CP-OCT) that can be integrated into variou...

  15. Image reconstruction in optical tomography using Radon transform and its inverse

    Science.gov (United States)

    Petrehus, Viorel; Gavrila, Camelia; Gruia, Ion

    2009-10-01

    Optical tomography is a new medical imaging modality that is at the threshold of realization. A large amount of clinical work has shown the very real benefits that such a method could provide. At the same time a considerable effort has been put into theoretical studies of its probable success. At present there exist gaps between these two realms. In this paper we review some general approaches to inverse problems to set the context for optical tomography. An essential requirement is to treat the problem in a nonlinear fashion, by using an iterative method. The inverse problem is approached by numerical solutions methods using MathCad program. The Radon transform is the basic tool of the computerized tomography. In the sequel we introduce this transform, review some properties and present a numerical program for its inversion. We show some results that represent the most complex and realistic simulations of optical tomography yet developed.

  16. Evaluation of caries-affected dentin with optical coherence tomography

    Directory of Open Access Journals (Sweden)

    Cynthia Soares de Azevedo

    2011-10-01

    Full Text Available The purpose of this study was to evaluate the degree of demineralization of artificially induced caries-affected human dentin by an in vitro microbiological method. The occlusal surfaces of 6 human molar teeth were abraded until a flat surface was obtained, and the enamel was removed to expose the occlusal dentin surface. These teeth were sectioned in 12 halves in the vestibular-lingual direction and divided into 3 groups according to the period length of the microbiological essay (n = 4: G1, 7 days; G2, 14 days; and G3, 21 days. The surfaces of all specimens were protected by an acid-resistant nail varnish, except for a window where the caries lesion was induced by a Streptoccocus mutans biofilm in a batch-culture model supplemented with 5% sucrose. The specimens were then analyzed by optical coherence tomography (OCT with a super-luminescent light diode (? = 930 nm with 6.0-µm lateral and longitudinal resolution (in the air. Qualitative and quantitative results (images and average dentin demineralization, respectively were obtained. The mean demineralization depths were (µm 235 ± 31.4, 279 ± 14, and 271 ± 8.3 in groups 1, 2, and 3, respectively. In addition, no significant change was observed in the lesion mean depth from 7 days of cariogenic challenge on. In conclusion, OCT was shown to be an efficient and non-invasive method to detect the depths of lesions caused by demineralization. Further, a seven-day demineralization time was considered sufficient for caries-affected dentin to be obtained.

  17. Evaluation of caries-affected dentin with optical coherence tomography

    Scientific Electronic Library Online (English)

    Cynthia Soares de, Azevedo; Luciana Cardoso Espejo, Trung; Maria Regina Lorenzetti, Simionato; Anderson Zanardi de, Freitas; Adriana Bona, Matos.

    2011-10-01

    Full Text Available The purpose of this study was to evaluate the degree of demineralization of artificially induced caries-affected human dentin by an in vitro microbiological method. The occlusal surfaces of 6 human molar teeth were abraded until a flat surface was obtained, and the enamel was removed to expose the o [...] cclusal dentin surface. These teeth were sectioned in 12 halves in the vestibular-lingual direction and divided into 3 groups according to the period length of the microbiological essay (n = 4): G1, 7 days; G2, 14 days; and G3, 21 days. The surfaces of all specimens were protected by an acid-resistant nail varnish, except for a window where the caries lesion was induced by a Streptoccocus mutans biofilm in a batch-culture model supplemented with 5% sucrose. The specimens were then analyzed by optical coherence tomography (OCT) with a super-luminescent light diode (? = 930 nm) with 6.0-µm lateral and longitudinal resolution (in the air). Qualitative and quantitative results (images and average dentin demineralization, respectively) were obtained. The mean demineralization depths were (µm) 235 ± 31.4, 279 ± 14, and 271 ± 8.3 in groups 1, 2, and 3, respectively. In addition, no significant change was observed in the lesion mean depth from 7 days of cariogenic challenge on. In conclusion, OCT was shown to be an efficient and non-invasive method to detect the depths of lesions caused by demineralization. Further, a seven-day demineralization time was considered sufficient for caries-affected dentin to be obtained.

  18. Retinal neurodegeneration on optical coherence tomography and cerebral atrophy.

    Science.gov (United States)

    Ong, Yi-Ting; Hilal, Saima; Cheung, Carol Y; Venketasubramanian, Narayanaswamy; Niessen, Wiro J; Vrooman, Henri; Anuar, Ainur R; Chew, Merwyn; Chen, Christopher; Wong, Tien Yin; Ikram, Mohammad Kamran

    2015-01-01

    Neurodegeneration in dementia is mainly evaluated by assessing cerebral atrophy, while retinal neurodegeneration can be quantified in vivo using optical coherence tomography (OCT). We examined the association of retinal nerve fibre layer (RNFL) and ganglion cell-inner plexiform layer (GC-IPL) thinning with global and regional cerebral atrophy on magnetic resonance imaging (MRI). Malay participants aged 60-80 years from the Epidemiology of Dementia in Singapore Study underwent comprehensive examinations, including 3-Tesla cranial MRI. RNFL and GC-IPL thicknesses were obtained from spectral domain-OCT; and cerebral grey and white matter volumes were obtained from MRI scans using a validated segmentation tool. Linear regression models were constructed with adjustment for age and sex; and additionally for vascular risk factors and MRI markers including intracranial volume. 164 participants without glaucoma with gradable quality MRI and OCT scans were included for analysis. GC-IPL thinning was associated with reduction in total brain volume in the occipital (mean change in GC-IPL per standard deviation (SD) decrease in occipital lobe volume: -1.77 ?m, 95% confidence interval (CI) -6.55 to 0.01 ?m) and temporal lobes (mean change in GC-IPL per SD decrease in temporal lobe volume: -3.45 ?m, 95%CI -5.40 to -1.49 ?m) in multivariate adjusted models. In particular, GC-IPL thinning was primarily associated with grey matter volume, whereas no association was found with white matter changes. Retinal neuronal damage, as reflected by GC-IPL thinning, was independently associated with grey matter loss in the occipital and temporal lobes, suggesting that retinal OCT may provide insights for assessing neurodegeneration in the brain. PMID:25451722

  19. Optical coherence tomography for imaging of chronic total occlusions

    Science.gov (United States)

    Munce, Nigel R.; Yang, Victor X. D.; Qiang, Beiping; Courtney, Brian K.; Brzozowski, Lukasz; Bakueva, Ludmilla; Mao, Linda Y.; Standish, Beau; Butany, Jagdish; Dick, Alexander J.; Strauss, Bradley H.; Wright, Graham A.; Vitkin, Alex

    2005-09-01

    Chronic total occlusions (CTOs) are defined as complete occlusions of an artery older than one month. Minimally invasive catheter-based interventions commonly employed for partial occlusions (e.g., balloon angioplasty followed by stenting) are problematic in CTOs because of the phycisian's inability to pass the device through the occlusion without a significant risk of arterial wall perforations. Furthermore, successfully treated CTOs exhibit a high re-occlusion rate. As a result, these cases are mostly sent to bypass surgery. With the advent of drug-eluting stents that reduce the incidence of re-occlusion, and thus, eliminating the second problem, new devices have begun to emerge that aim to recanalize CTOs without the cost and trauma of bypass surgery. These devices, however, need effective image guidance methods to ensure successful crossing of the CTOs. Optical coherence tomography (OCT) is being evaluated as an intravascular imaging modality for guiding catheter-based interventions of CTOs. Occluded ex vivo human arterial samples were used to produce longitudinal cross-sections using an OCT system. These OCT images were compared with histology to assess OCT's ability to identify different components of the occluded artery, evaluate the imaging depth, and determine the ability to detect the underlying vessel wall. Given the inherent difficulties of creating a mechanically scanning OCT probe in the distal tip of a catheter for use in a stenotic artery, we directed our initial efforts towards developing a "motionless" fiber based OCT system using a single mode fiber array. We discuss design considerations for implementing a forward viewing intravascular OCT probe.

  20. Multispectral Cerenkov luminescence tomography for small animal optical imaging.

    Science.gov (United States)

    Spinelli, Antonello E; Kuo, Chaincy; Rice, Brad W; Calandrino, Riccardo; Marzola, Pasquina; Sbarbati, Andrea; Boschi, Federico

    2011-06-20

    Quite recently Cerenkov luminescence imaging (CLI) has been introduced as a novel pre-clinical imaging for the in vivo imaging of small animals such as mice. The CLI method is based on the detection of Cerenkov radiation (CR) generated by beta particles as they travel into the animal tissues with an energy such that Cerenkov emission condition is satisfied. This paper describes an image reconstruction method called multi spectral diffuse Cerenkov luminescence tomography (msCLT) in order to obtain 3D images from the detection of CR. The multispectral approach is based on a set of 2D planar images acquired using a number of narrow bandpass filters, and the distinctive information content at each wavelength is used in the 3D image reconstruction process. The proposed msCLT method was tested both in vitro and in vivo using 32P-ATP and all the images were acquired by using the IVIS 200 small animal optical imager (Caliper Life Sciences, Alameda USA). Source depth estimation and spatial resolution measurements were performed using a small capillary source placed between several slices of chicken breast. The theoretical Cerenkov emission spectrum and optical properties of chicken breast were used in the modelling of photon propagation. In vivo imaging was performed by injecting control nude mice with 10 MBq of 32P-ATP and the 3D tracer bio-distribution was reconstructed. Whole body MRI was acquired to provide an anatomical localization of the Cerenkov emission. The spatial resolution obtained from the msCLT reconstructed images of the capillary source showed that the FWHM is about 1.5 mm for a 6 mm depth. Co-registered MRI images showed that the Cerenkov emission regions matches fairly well with anatomical regions, such as the brain, heart and abdomen. Ex vivo imaging of the different organs such as intestine, brain, heart and ribs further confirms these findings. We conclude that in vivo 3D bio-distribution of a pure beta-minus emitting radiopharmaceutical such as 32P-ATP can be obtained using the msCLT reconstruction approach. PMID:21716501

  1. Consensus standards for acquisition, measurement, and reporting of intravascular optical coherence tomography studies : a report from the international working group for intravascular optical coherence tomography standardization and validation

    DEFF Research Database (Denmark)

    Tearney, Guillermo J; Regar, Evelyn

    2012-01-01

    The purpose of this document is to make the output of the International Working Group for Intravascular Optical Coherence Tomography (IWG-IVOCT) Standardization and Validation available to medical and scientific communities, through a peer-reviewed publication, in the interest of improving the diagnosis and treatment of patients with atherosclerosis, including coronary artery disease.

  2. Consensus standards for acquisition, measurement, and reporting of intravascular optical coherence tomography studies : a report from the International Working Group for Intravascular Optical Coherence Tomography Standardization and Validation

    DEFF Research Database (Denmark)

    Tearney, Guillermo J; Regar, Evelyn

    2012-01-01

    The purpose of this document is to make the output of the International Working Group for Intravascular Optical Coherence Tomography (IWG-IVOCT) Standardization and Validation available to medical and scientific communities, through a peer-reviewed publication, in the interest of improving the diagnosis and treatment of patients with atherosclerosis, including coronary artery disease.

  3. Optic axis determination by fibre-based polarization-sensitive swept-source optical coherence tomography

    Energy Technology Data Exchange (ETDEWEB)

    Lu Zenghai; Kasaragod, Deepa K; Matcher, Stephen J, E-mail: z.lu@sheffield.ac.uk, E-mail: s.j.matcher@sheffield.ac.uk [Department of Materials Science and Engineering, Kroto Research Institute, University of Sheffield, North Campus, Broad Lane, Sheffield, S3 7HQ (United Kingdom)

    2011-02-21

    We describe a fibre-based variable-incidence angle (VIA) polarization-sensitive swept-source optical coherence tomography (PS-SS-OCT) system to determine the 3D optical axis of birefringent biological tissues. Single-plane VIA-PS-OCT is also explored which requires measurement of the absolute fast-axis orientation. A state-of-the-art PS-SS-OCT system with some improvements both in hardware and software was used to determine the apparent optical birefringence of equine tendon for a number of different illumination directions. Polar and azimuthal angles of cut equine tendon were produced by the VIA method and compared with the nominal values. A quarter waveplate (QWP) and equine tendon were used as test targets to validate the fast-axis measurements using the system. Polar and azimuthal angles of cut equine tendon broadly agreed with the expected values within about 8% of the nominal values. A theoretical and experimental analysis of the effect of the sample arm fibre on determination of optical axis orientation using a proposed definition based on the orientation of the eigenpolarization ellipse experimentally confirms that this algorithm only works correctly for special settings of the sample arm fibre. A proposed algorithm based on the angle between Stokes vectors on the Poincare sphere is confirmed to work for all settings of the sample arm fibre. A calibration procedure is proposed to remove the sign ambiguity of the measured orientation and was confirmed experimentally by using the QWP.

  4. Optic axis determination by fibre-based polarization-sensitive swept-source optical coherence tomography

    International Nuclear Information System (INIS)

    We describe a fibre-based variable-incidence angle (VIA) polarization-sensitive swept-source optical coherence tomography (PS-SS-OCT) system to determine the 3D optical axis of birefringent biological tissues. Single-plane VIA-PS-OCT is also explored which requires measurement of the absolute fast-axis orientation. A state-of-the-art PS-SS-OCT system with some improvements both in hardware and software was used to determine the apparent optical birefringence of equine tendon for a number of different illumination directions. Polar and azimuthal angles of cut equine tendon were produced by the VIA method and compared with the nominal values. A quarter waveplate (QWP) and equine tendon were used as test targets to validate the fast-axis measurements using the system. Polar and azimuthal angles of cut equine tendon broadly agreed with the expected values within about 8% of the nominal values. A theoretical and experimental analysis of the effect of the sample arm fibre on determination of optical axis orientation using a proposed definition based on the orientation of the eigenpolarization ellipse experimentally confirms that this algorithm only works correctly for special settings of the sample arm fibre. A proposed algorithm based on the angle between Stokes vectors on the Poincare sphere is confirmed to work for all settings of the sample arm fibre. A calibration procedure is proposed to remove the sign ambiguity of the measured orientation and was confirmed experimentally by using the QWP.

  5. Imaging modal content of cone photoreceptors using adaptive optics optical coherence tomography

    Science.gov (United States)

    Liu, Zhuolin; Kocaoglu, Omer P.; Turner, Timothy L.; Miller, Donald T.

    2015-03-01

    It has been long established that photoreceptors capture light based on the principles of optical waveguiding. Yet after decades of experimental and theoretical investigations considerable uncertainty remains, even for the most basic prediction as to whether photoreceptors support more than a single waveguide mode. To test for modal behavior in human cone photoreceptors, we took advantage of adaptive-optics optical coherence tomography (AO-OCT, ?c=785 nm) to noninvasively image in three dimensions the reflectance profiles generated in the inner and outer segments (IS, OS) of cones. Mode content was examined over a range of cone diameters by imaging cones from 0.6° to 10° retinal eccentricity (n = 1802). Fundamental to the method was extraction of reflections at the cone IS/OS junction and cone outer segment tip (COST). Modal content properties of size, circularity and orientation were quantified using second moment analysis. Analysis of the cone reflections indicates waveguide properties of cone IS and OS depend on segment diameter. Cone IS was found to support a single mode near the fovea (<=3°) and multiple modes further away (<4°). In contrast, no evidence of multiple modes was found in the cone OSs. The IS/OS and COST reflections share a common optical aperture, are most circular near the fovea, and show no orientation preference.

  6. Imaging patients with glaucoma using spectral-domain optical coherence tomography and optical microangiography

    Science.gov (United States)

    Auyeung, Kris; Auyeung, Kelsey; Kono, Rei; Chen, Chieh-Li; Zhang, Qinqin; Wang, Ruikang K.

    2015-03-01

    In ophthalmology, a reliable means of diagnosing glaucoma in its early stages is still an open issue. Past efforts, including forays into fluorescent angiography (FA) and early optical coherence tomography (OCT) systems, to develop a potential biomarker for the disease have been explored. However, this development has been hindered by the inability of the current techniques to provide useful depth and microvasculature information of the optic nerve head (ONH), which have been debated as possible hallmarks of glaucoma progression. We reasoned that a system incorporating a spectral-domain OCT (SD-OCT) based Optical Microangiography (OMAG) system, could allow an effective, non-invasive methodology to evaluate effects on microvasculature by glaucoma. SD-OCT follows the principle of light reflection and interference to produce detailed cross-sectional and 3D images of the eye. OMAG produces imaging contrasts via endogenous light scattering from moving particles, allowing for 3D image productions of dynamic blood perfusion at capillary-level resolution. The purpose of this study was to investigate the optic cup perfusion (flow) differences in glaucomatous and normal eyes. Images from three normal and five glaucomatous subjects were analyzed our OCT based OMAG system for blood perfusion and structural images, allowing for comparisons. Preliminary results from blood flow analysis revealed reduced blood perfusion within the whole-depth region encompassing the Lamina Cribrosa in glaucomatous cases as compared to normal ones. We conclude that our OCT-OMAG system may provide promise and viability for glaucoma screening.

  7. Development and Application of Multifunctional Optical Coherence Tomography

    Science.gov (United States)

    Zhi, Zhongwei

    Microcirculation refers to the functions of capillaries and the neighboring lymphatic vessels. It plays a vital role in the pathophysiology of disorders in many clinical areas including cardiology, dermatology, neurology and ophthalmology, and so forth. It is crucial to develop imaging technologies that can provide both qualitative and quantitative information as to how microcirculation responds to certain injury and/or disease, and its treatment. Optical coherence tomography (OCT) is a non-invasive optical imaging technique for high-resolution cross-sectional imaging of specimens, with many applications in clinical medicine. Current state-of-the-art OCT systems operate in the Fourier domain, using either a broadband light source with a spectrometer, known as spectral domain OCT (SDOCT), or a rapidly tunable laser, known as swept source OCT (SSOCT). The current Fourier domain OCT systems have dramatically improvement in sensitivity, resolution and speed compared to time domain OCT. In addition to the improvement in the OCT system hardware, different methods for functional measurements of tissue beds have been developed and demonstrated. This includes but not limited to, i) Phase-resolved Doppler OCT for quantifying the blood flow, ii) OCT angiography for visualization of microvasculature, iii) Polarization sensitive OCT for measuring the intrinsic optical property/ birefringence of tissue, iv) spectroscopic OCT for measuring blood oxygenation, etc. Functional OCT can provide important clinical information that is not available in the typical intensity based structural OCT images. Among these functional OCT modalities, Doppler OCT and OCT angiography attract great interests as they show high capability for in vivo study of microvascular pathology. By analyzing the Doppler effect of a flowing particle on light frequency, Doppler OCT allows the quantification of the blood flow speed and blood flow rate. The most popular approach for Doppler OCT is achieved through analysis of the phase term in complex OCT signal which termed as Phase-resolved Doppler OCT. However, as limited by the phase noise and motion, Phase-resolved Doppler OCT can only be applied for relative large blood vessels, such as arterioles and venules. On the other hand, in order to visualize the microcirculation network, a number of strategies to enable better contrast of microvasculature components, which we termed OCT angiography, have been introduced during recent years. As a variation of Fourier domain OCT, optical microangiography (OMAG) is one of earliest proposed OCT angiography technique which is capable of generating 3D images of dynamic blood perfusion distribution within microcirculatory tissue beds. The OMAG algorithm works by separating the static and moving elements by high pass filtering on complex valued interferometric data after Fourier transform. Based on the conventional OMAG algorithm, we further developed ultra-high sensitive OMAG (UHS-OMAG) by switching the high-pass filtering from fast scan direction (adjacent A-lines within one B-frame) to slow scan direction (adjacent B-frames), which has a dramatically improved performance for capillary network imaging and analysis. Apart from the microvascular study with current available functional OCT for, visualization of the lymphatic system (lymph nodes and lymphatic vessels) plays a significant role in assessing patients with various malignancies and lymphedema. However, there is a lack of label-free and noninvasive method for lymphangiography. Hence, a cutting edge research to investigate the capability of OCT as a tool for non-invasive and label-free lymphangiography would be highly desired. The objective of my thesis is to develop a multiple-functional SDOCT system to image the microcirculation and quantify the several important parameters of microcirculation within microcirculatory tissue beds, and further apply it for pre-clinical research applications. The multifunctional OCT system provides modalities including structural OCT, OCT angiography, Doppler OCT and Optical lymphangiography, for multi-parametric study of tissue microstructure, blood vessel morphology, blood flow and lymphatic vessel all together. The thesis mainly focus on two parts: first, development of multi-functional OCT/optical microangiography (OMAG) system and methods for volumetric imaging of microvasculature and quantitative measurement of blood flow, and its application for pathological research in ophthalmology on rodent eye models; second, development of ultra-high resolution OCT system and algorithm for simultaneous label free imaging of blood and lymphatic vessel, and its application in wound healing study on mouse ear flap model. Objectives of my research are achieved through the following specific aims: Aim 1: Improve the sensitivity of OMAG for microvasculature imaging; perform volumetric and quantitative imaging of vasculature with combined OMAG and Phase-resolved Doppler OCT for in vivo study of vascular physiology. Aim 2: Develop high speed high resolution OCT system and method for rodent eye imaging. Apply the combined OMAG and Phase-resolved Doppler OCT approach to investigate the impact of elevated intraocular pressure on retinal, choroidal and optic nerve head blood flow in rat eye model, which aids to the better understanding of the mechanism and development of glaucoma. Aim 3: Apply the developed OCT system and ultra-high sensitive OMAG algorithm for noninvasive imaging of retinal morphology and microvasculature in obese mice, which may play an important role in early diagnosis of Diabetic retinopathy. Aim 4: Developing an ultra-high resolution SDOCT system using broadband Supercontinuum light source to achieve ultra-high resolution microvasculature imaging of biological tissue. Aim 5: Develop methods for simultaneous label free optical imaging of blood and lymphatic vessel and demonstrate its capability by monitoring the blood and lymph response to wound healing on mouse ear pinna model.

  8. Whole body small animal examination with a diffuse optical tomography instrument

    International Nuclear Information System (INIS)

    We developed a fluorescent diffuse optical tomography instrument in our laboratory to study in vivo tumour growth without any stress or damage for the animal. By taking into account optical heterogeneities, the reconstruction algorithm allows whole body small animal examination. Experimental results obtained with this system on phantoms and on mice deep lung tumours examination are presented in this paper

  9. Three-dimensional representation of late-arriving photons for detecting inhomogeneities in diffuse optical tomography

    International Nuclear Information System (INIS)

    A method for rapid detection of absorbing inhomogeneity in a strongly scattering medium having the properties of a biological tissue before the image reconstruction is described based on the principles of diffuse optical tomography. The method is based on preliminary processing of a three-dimensional surface obtained from the set of time-resolved data in the Cartesian coordinate system, followed by its conformal transformation into two surfaces in the cylindrical coordinate system. A specific feature of the method is the use of late-arriving photons, scattered and diffusely transmitted through an optically turbid object. (optical tomography)

  10. The collagen structure of equine articular cartilage, characterized using polarization-sensitive optical coherence tomography

    International Nuclear Information System (INIS)

    Optical coherence tomography and polarization-sensitive optical coherence tomography images of equine articular cartilage are presented. Measurements were made on intact joint surfaces. Significant (e.g. x 2) variations in the intrinsic birefringence were found over spatial scales of a few millimetres, even on samples taken from young (18 month) animals that appeared visually homogeneous. A comparison of data obtained on a control tissue (equine flexor tendon) further suggests that significant variations in the orientation of the collagen fibres relative to the plane of the joint surface exist. Images of visually damaged cartilage tissue show characteristic features both in terms of the distribution of optical scatterers and of the birefringent components

  11. Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity

    International Nuclear Information System (INIS)

    We have developed a novel phase-resolved optical coherence tomography (OCT) and optical Doppler tomography (ODT) system that uses phase information derived from a Hilbert transformation to image blood flow in human skin with fast scanning speed and high velocity sensitivity. Using the phase change between sequential scans to construct flow-velocity imaging, this technique decouples spatial resolution and velocity sensitivity in flow images and increases imaging speed by more than 2 orders of magnitude without compromising spatial resolution or velocity sensitivity. The minimum flow velocity that can be detected with an axial-line scanning speed of 400 Hz and an average phase change over eight sequential scans is as low as 10 ?m/s , while a spatial resolution of 10 ?m is maintained. Using this technique, we present what are to our knowledge the first phase-resolved OCT/ODT images of blood flow in human skin. (c) 2000 Optical Society of America

  12. Simultaneous Topography and Tomography of Micro-structures using Full-field Swept-source Optical Coherence Tomography

    Science.gov (United States)

    Anna, Tulsi; Shakher, Chandra; Mehta, Dalip Singh

    2010-04-01

    A full-field swept source optical coherence tomographic (FF-SS-OCT) system has been reported for the simultaneous topography and tomography of the microstructures. Our optical set-up includes a swept-source which is a combination of super-luminescent diode (SLD) and acousto-optic tunable filter (AOTF), a compact Michelson interferometer and an area detector (CCD). Interference fringe signal was recorded by tuning the wavelength in a regular interval and fringe analysis was done by using Fourier-transform technique. By means of computing the inverse Fourier transform of the interference fringe signal both optically sectioned images (amplitude) and phase map of the microstructures were obtained. The present system is completely non-mechanical scanning, highly stable and very cost effective due to which it can be explored for many scientific and engineering applications.

  13. Optical imaging of oral pathological tissue using optical coherence tomography and synchrotron radiation computed microtomography

    Science.gov (United States)

    Cânj?u, Silvana; Todea, Carmen; Sinescu, Cosmin; Negrutiu, Meda L.; Duma, Virgil; M?nescu, Adrian; Topal?, Florin I.; Podoleanu, Adrian Gh.

    2013-06-01

    The efforts aimed at early diagnosis of oral cancer should be prioritized towards developing a new screening instrument, based on optical coherence tomography (OCT), to be used directly intraorally, able to perform a fast, real time, 3D and non-invasive diagnosis of oral malignancies. The first step in this direction would be to optimize the OCT image interpretation of oral tissues. Therefore we propose plastination as a tissue preparation method that better preserves three-dimensional structure for study by new optical imaging techniques. The OCT and the synchrotron radiation computed microtomography (micro-CT) were employed for tissue sample analyze. For validating the OCT results we used the gold standard diagnostic procedure for any suspicious lesion - histopathology. This is a preliminary study of comparing features provided by OCT and Micro-CT. In the conditions of the present study, OCT proves to be a highly promising imaging modality. The use of x-ray based topographic imaging of small biological samples has been limited by the low intrinsic x-ray absorption of non-mineralized tissue and the lack of established contrast agents. Plastination can be used to enhance optical imagies of oral soft tissue samples.

  14. Dispersion and compensation of optical coherence tomography using double-path rapid scanning optical delay line

    Science.gov (United States)

    Ye, Hai; Ling, Dongxiong; Xu, Yongzhao; Huang, Xiaoyuan

    2015-08-01

    Optical coherence tomography (OCT) with advantages of high resolution and high sensitivity is an emerging optical imaging technology that performs cross-sectional tomographic imaging of microstructure in biological system. In spite of the improvement of the longitudinal resolution by using low coherence light source, the dispersion effect aggravates with the increase of spectral bandwidth, which result in serious image blur and loss of image features. We demonstrate a double-path rapid scanning optical delay line (D-RSOD) structure in reference arm that produce the additional phase delay and group delay independent in OCT. The phase delay determined by grating defocus offset (GDO) of D-RSOD is controllable and the system dispersion is compensated by accurate adjustment of GDO in experiment. The full width at half maximum (FWHM) of the interference peak was measured to be 23.2?m and 15.2?m respectively before and after compensation. The experimental results indicate that the interference signal envelops shrink and the tomographic image clarify after dispersion compensation, D-RSOD is an effective means of dispersion compensation in OCT as well.

  15. Laser-ablated silicon nanoparticles: optical properties and perspectives in optical coherence tomography

    Science.gov (United States)

    Kirillin, M. Yu; Sergeeva, E. A.; Agrba, P. D.; Krainov, A. D.; Ezhov, A. A.; Shuleiko, D. V.; Kashkarov, P. K.; Zabotnov, S. V.

    2015-07-01

    Due to their biocompatibility silicon nanoparticles have high potential in biomedical applications, especially in optical diagnostics. In this paper we analyze properties of the silicon nanoparticles formed via laser ablation in water and study the possibility of their application as contrasting agents in optical coherence tomography (OCT). The nanoparticles suspension was produced by picosecond laser irradiation of monocrystalline silicon wafers in water. According to transmission electron microcopy analysis the silicon nanoparticles in the obtained suspension vary in size from 2 to 200?nm while concentration of the particles is estimated as 1013cm-3. The optical properties of the suspension in the range from 400 to 1000?nm were studied by spectrophotometry measurements revealing a scattering coefficient of about 0.1?mm-1 and a scattering anisotropy factor in the range of 0.2-0.4. In OCT study a system with a central wavelength of 910?nm was employed. Potential of the silicon nanoparticles as a contrasting agent for OCT is studied in experiments with agarose gel phantoms. Topical application of the nanoparticles suspension allowed the obtaining of the contrast of structural features of phantom up to 14?dB in the OCT image.

  16. Automated 3D segmentation of intraretinal layers from optic nerve head optical coherence tomography images

    Science.gov (United States)

    Antony, Bhavna J.; Abràmoff, Michael D.; Lee, Kyungmoo; Sonkova, Pavlina; Gupta, Priya; Kwon, Young; Niemeijer, Meindert; Hu, Zhihong; Garvin, Mona K.

    2010-03-01

    Optical coherence tomography (OCT), being a noninvasive imaging modality, has begun to find vast use in the diagnosis and management of ocular diseases such as glaucoma, where the retinal nerve fiber layer (RNFL) has been known to thin. Furthermore, the recent availability of the considerably larger volumetric data with spectral-domain OCT has increased the need for new processing techniques. In this paper, we present an automated 3-D graph-theoretic approach for the segmentation of 7 surfaces (6 layers) of the retina from 3-D spectral-domain OCT images centered on the optic nerve head (ONH). The multiple surfaces are detected simultaneously through the computation of a minimum-cost closed set in a vertex-weighted graph constructed using edge/regional information, and subject to a priori determined varying surface interaction and smoothness constraints. The method also addresses the challenges posed by presence of the large blood vessels and the optic disc. The algorithm was compared to the average manual tracings of two observers on a total of 15 volumetric scans, and the border positioning error was found to be 7.25 +/- 1.08 ?m and 8.94 +/- 3.76 ?m for the normal and glaucomatous eyes, respectively. The RNFL thickness was also computed for 26 normal and 70 glaucomatous scans where the glaucomatous eyes showed a significant thinning (p < 0.01, mean thickness 73.7 +/- 32.7 ?m in normal eyes versus 60.4 +/- 25.2 ?m in glaucomatous eyes).

  17. 3D Human cartilage surface characterization by optical coherence tomography

    Science.gov (United States)

    Brill, Nicolai; Riedel, Jörn; Schmitt, Robert; Tingart, Markus; Truhn, Daniel; Pufe, Thomas; Jahr, Holger; Nebelung, Sven

    2015-10-01

    Early diagnosis and treatment of cartilage degeneration is of high clinical interest. Loss of surface integrity is considered one of the earliest and most reliable signs of degeneration, but cannot currently be evaluated objectively. Optical Coherence Tomography (OCT) is an arthroscopically available light-based non-destructive real-time imaging technology that allows imaging at micrometre resolutions to millimetre depths. As OCT-based surface evaluation standards remain to be defined, the present study investigated the diagnostic potential of 3D surface profile parameters in the comprehensive evaluation of cartilage degeneration. To this end, 45 cartilage samples of different degenerative grades were obtained from total knee replacements (2 males, 10 females; mean age 63.8 years), cut to standard size and imaged using a spectral-domain OCT device (Thorlabs, Germany). 3D OCT datasets of 8  ×  8, 4  ×  4 and 1  ×  1 mm (width  ×  length) were obtained and pre-processed (image adjustments, morphological filtering). Subsequent automated surface identification algorithms were used to obtain the 3D primary profiles, which were then filtered and processed using established algorithms employing ISO standards. The 3D surface profile thus obtained was used to calculate a set of 21 3D surface profile parameters, i.e. height (e.g. Sa), functional (e.g. Sk), hybrid (e.g. Sdq) and segmentation-related parameters (e.g. Spd). Samples underwent reference histological assessment according to the Degenerative Joint Disease classification. Statistical analyses included calculation of Spearman’s rho and assessment of inter-group differences using the Kruskal Wallis test. Overall, the majority of 3D surface profile parameters revealed significant degeneration-dependent differences and correlations with the exception of severe end-stage degeneration and were of distinct diagnostic value in the assessment of surface integrity. None of the 3D surface profile parameters investigated were capable of reliably differentiating healthy from early-degenerative cartilage, while scan area sizes considerably affected parameter values. In conclusion, cartilage surface integrity may be adequately assessed by 3D surface profile parameters, which should be used in combination for the comprehensive and thorough evaluation and overall improved diagnostic performance. OCT- and image-based surface assessment could become a valuable adjunct tool to standard arthroscopy.

  18. Assessment of Sentinel Node Biopsies With Full-Field Optical Coherence Tomography.

    Science.gov (United States)

    Grieve, Kate; Mouslim, Karima; Assayag, Osnath; Dalimier, Eugénie; Harms, Fabrice; Bruhat, Alexis; Boccara, Claude; Antoine, Martine

    2016-04-01

    Current techniques for the intraoperative analysis of sentinel lymph nodes during breast cancer surgery present drawbacks such as time and tissue consumption. Full-field optical coherence tomography is a novel noninvasive, high-resolution, fast imaging technique. This study investigated the use of full-field optical coherence tomography as an alternative technique for the intraoperative analysis of sentinel lymph nodes. Seventy-one axillary lymph nodes from 38 patients at Tenon Hospital were imaged minutes after excision with full-field optical coherence tomography in the pathology laboratory, before being handled for histological analysis. A pathologist performed a blind diagnosis (benign/malignant), based on the full-field optical coherence tomography images alone, which resulted in a sensitivity of 92% and a specificity of 83% (n = 65 samples). Regular feedback was given during the blind diagnosis, with thorough analysis of the images, such that features of normal and suspect nodes were identified in the images and compared with histology. A nonmedically trained imaging expert also performed a blind diagnosis aided by the reading criteria defined by the pathologist, which resulted in 85% sensitivity and 90% specificity (n = 71 samples). The number of false positives of the pathologist was reduced by 3 in a second blind reading a few months later. These results indicate that following adequate training, full-field optical coherence tomography can be an effective noninvasive diagnostic tool for extemporaneous sentinel node biopsy qualification. PMID:25804544

  19. Noncontact quantitative biomechanical characterization of cardiac muscle using shear wave imaging optical coherence tomography

    OpenAIRE

    Wang, Shang; Lopez, Andrew L.; Morikawa, Yuka; Tao, Ge; Li, Jiasong; Larina, Irina V.; Martin, James F.; Larin, Kirill V

    2014-01-01

    We report on a quantitative optical elastographic method based on shear wave imaging optical coherence tomography (SWI-OCT) for biomechanical characterization of cardiac muscle through noncontact elasticity measurement. The SWI-OCT system employs a focused air-puff device for localized loading of the cardiac muscle and utilizes phase-sensitive OCT to monitor the induced tissue deformation. Phase information from the optical interferometry is used to reconstruct 2-D depth-resolved shear wave p...

  20. Crystal Optical Properties of Inhomogeneous Plates and the Problems of Polarization Tomography of Photoelastic Materials

    CERN Document Server

    Kushnir, O; Vlokh, R; Kukhtarev, N

    2005-01-01

    Using the Jones matrix formalism, crystal optical properties of inhomogeneous material consisting of a pile of weakly birefringent plates are analysed in relation to the cell model adopted in polarization tomography of 3D dielectric tensor field in photoelastic media. It is shown that the material manifests in general an "apparent" optical gyration caused by different orientations of the plates. Relations between the polarimetric parameters and the dielectric tensor components are ascertained for the case of weak optical anisotropy.

  1. Crystal Optical Properties of Inhomogeneous Plates and the Problems of Polarization Tomography of Photoelastic Materials

    Directory of Open Access Journals (Sweden)

    Kushnir O.

    2005-09-01

    Full Text Available Using the Jones matrix formalism, crystal optical properties of inhomogeneous material consisting of a pile of weakly birefringent plates are analysed in relation to the cell model adopted in polarization tomography of 3D dielectric tensor field in photoelastic media. It is shown that the material manifests in general an “apparent” optical gyration caused by different orientations of the plates. Relations between the polarimetric parameters and the dielectric tensor components are ascertained for the case of weak optical anisotropy.

  2. Diffuse optical correlation tomography of cerebral blood flow during cortical spreading depression in rat brain

    Science.gov (United States)

    Zhou, Chao; Yu, Guoqiang; Furuya, Daisuke; Greenberg, Joel; Yodh, Arjun; Durduran, Turgut

    2006-02-01

    Diffuse optical correlation methods were adapted for three-dimensional (3D) tomography of cerebral blood flow (CBF) in small animal models. The image reconstruction was optimized using a noise model for diffuse correlation tomography which enabled better data selection and regularization. The tomographic approach was demonstrated with simulated data and during in-vivo cortical spreading depression (CSD) in rat brain. Three-dimensional images of CBF were obtained through intact skull in tissues(~4mm) deep below the cortex.

  3. A unique stenosis in saphenous vein graft visualized by optical coherence tomography

    OpenAIRE

    Koeda, Yorihiko; Itoh, Tomonori; Fusazaki, Tetsuya; Nakamura, Motoyuki; Morino, Yoshihiro

    2013-01-01

    We present a case of a unique stenosis in a 12-year-old saphenous vein graft (SVG), to the right coronary artery, which was visualized by optical coherence tomography (OCT), before percutaneous coronary intervention. The patient was an 80-year-old man in whom the stenosis was documented by area-detector coronary computed tomography. OCT imaging demonstrated that the culprit lesion was a venous valve containing a thrombus before preintervention imaging. Coronary stenting was performed with a d...

  4. Optic nerve head analysis of superior segmental optic hypoplasia using Heidelberg retina tomography

    Directory of Open Access Journals (Sweden)

    Atsushi Miki

    2010-10-01

    Full Text Available Atsushi Miki1,2, Motohiro Shirakashi1, Kiyoshi Yaoeda1, Atsushi Fukushima1, Mineo Takagi1, Haruki Abe11Division of Ophthalmology and Visual Sciences, Niigata University Graduate School of Medical and Dental Sciences, Niigata, 2Department of Ophthalmology, Kawasaki Medical School, Okayama, JapanPurpose: To evaluate the optic disc characteristics of eyes with superior segmental optic hypoplasia (SSOH using the Heidelberg retina tomograph (HRT.Patients and methods: Thirteen eyes of 13 Japanese patients with SSOH were studied with the HRT (software version: 3.0. The group included six males and seven females, with a mean age of 34.7 years. Six optic disc parameters in the six sectors derived from the patients with SSOH were compared with those of 13 eyes of 13 normal controls. In addition, the diagnostic classification performance of the Frederick S Mikelberg (FSM discriminant function, glaucoma probability score (GPS, and Moorfields regression analysis (MRA were assessed.Results: When compared with normal subjects, many of the optic disc parameters were significantly altered in SSOH in the superior sectors. The area under the curve (AUC for the receiver operating characteristic was 0.932 for the rim area, 0.926 for the cup-to-disc area ratio, and 0.882 for the cup shape measure. Among the HRT parameters, the largest AUC (0.988 was found for the cup shape measure in the nasal superior segment. The proportion classified as outside normal limits by the FSM discriminant function was 92.3% (12 eyes. For GPS, six eyes (46.2% were classified as outside normal limits. For MRA, when borderline cases were considered test-negative or test-positive, 10 eyes (76.9% or 11 eyes (84.6% were classified as outside normal limits, respectively. The AUCs were 0.976 for the FSM discriminant function, 0.914 for the MRA overall classification, and 0.710 for the GPS overall classification.Conclusions: In eyes with SSOH, there is a significant thinning of the rim, especially in the nasal superior sector. Approximately half of the eyes with SSOH were classified as abnormal using indices developed for detecting glaucoma, but the sectorial analysis revealed that the affected sectors were different from those of glaucoma. Optic nerve head measurements using the HRT may be useful in evaluating the optic disc characteristics in eyes with SSOH.Keywords: superior segmental optic hypoplasia, Heidelberg retina tomography

  5. Functional imaging in bulk tissue specimens using optical emission tomography: fluorescence preservation during optical clearing

    Science.gov (United States)

    Sakhalkar, H. S.; Dewhirst, M.; Oliver, T.; Cao, Y.; Oldham, M.

    2007-04-01

    Optical emission computed tomography (optical-ECT) is a technique for imaging the three-dimensional (3D) distribution of fluorescent probes in biological tissue specimens with high contrast and spatial resolution. In optical-ECT, functional information can be imaged by (i) systemic application of functional labels (e.g. fluorophore labelled proteins) and/or (ii) endogenous expression of fluorescent reporter proteins (e.g. red fluorescent protein (RFP), green fluorescent protein (GFP)) in vivo. An essential prerequisite for optical-ECT is optical clearing, a procedure where tissue specimens are made transparent to light by sequential perfusion with fixing, dehydrating and clearing agents. In this study, we investigate clearing protocols involving a selection of common fixing (4% buffered paraformaldehyde (PFA), methanol and ethanol), dehydrating (methanol and ethanol) and clearing agents (methyl salicylate and benzyl-alcohol-benzyl-benzoate (BABB)) in order to determine a 'fluorescence friendly' clearing procedure. Cell culture experiments were employed to optimize the sequence of chemical treatments that best preserve fluorescence. Texas red (TxRed), fluorescein isothiocyanate (FITC), RFP and GFP were tested as fluorophores and fluorescent reporter proteins of interest. Fluorescent and control cells were imaged on a microscope using a DSred2 and FITC filter set. The most promising clearing protocols of cell culture experiments were applied to whole xenograft tumour specimens, to test their effectiveness in large unsectioned samples. Fluorescence of TxRed/FITC fluorophores was not found to be significantly affected by any of the test clearing protocols. RFP and GFP fluorescence, however, was found to be significantly greater when cell fixation was in ethanol. Fixation in either PFA or methanol resulted in diminished fluorescence. After ethanol fixation, the RFP and GFP fluorescence proved remarkably robust to subsequent exposure to either methyl salicylate or BABB. The optimized optical clearing procedure of ethanol fixation followed by methyl salicylate clearing preserved the fluorescence of constitutive RFP in whole xenograft tumour specimens, about 1 cc in dimension, indicating successful extension from cell plating experiments to whole tissue samples. Finally, the feasibility of imaging the 3D distribution of viable tumour cells (as indicated by the RFP emission) is demonstrated by optical-ECT imaging of cleared xenograft tumours using an in-house system.

  6. Functional imaging in bulk tissue specimens using optical emission tomography: fluorescence preservation during optical clearing

    International Nuclear Information System (INIS)

    Optical emission computed tomography (optical-ECT) is a technique for imaging the three-dimensional (3D) distribution of fluorescent probes in biological tissue specimens with high contrast and spatial resolution. In optical-ECT, functional information can be imaged by (i) systemic application of functional labels (e.g. fluorophore labelled proteins) and/or (ii) endogenous expression of fluorescent reporter proteins (e.g. red fluorescent protein (RFP), green fluorescent protein (GFP)) in vivo. An essential prerequisite for optical-ECT is optical clearing, a procedure where tissue specimens are made transparent to light by sequential perfusion with fixing, dehydrating and clearing agents. In this study, we investigate clearing protocols involving a selection of common fixing (4% buffered paraformaldehyde (PFA), methanol and ethanol), dehydrating (methanol and ethanol) and clearing agents (methyl salicylate and benzyl-alcohol-benzyl-benzoate (BABB)) in order to determine a 'fluorescence friendly' clearing procedure. Cell culture experiments were employed to optimize the sequence of chemical treatments that best preserve fluorescence. Texas red (TxRed), fluorescein isothiocyanate (FITC), RFP and GFP were tested as fluorophores and fluorescent reporter proteins of interest. Fluorescent and control cells were imaged on a microscope using a DSred2 and FITC filter set. The most promising clearing protocols of cell culture experiments were applied to whole xenograft tumour specimens, to test their effectiveness in large unsectioned samples. Fluorescence of TxRed/FITC fluorophores was not found to be significantly affected by any of the test clearing protocols. RFP and GFP fluorescence, however, was found to be significantly greater when cell fixation was in ethanol. Fixation in either PFA or methanol resulted in diminished fluorescence. After ethanol fixation, the RFP and GFP fluorescence proved remarkably robust to subsequent exposure to either methyl salicylate or BABB. The optimized optical clearing procedure of ethanol fixation followed by methyl salicylate clearing preserved the fluorescence of constitutive RFP in whole xenograft tumour specimens, about 1 cc in dimension, indicating successful extension from cell plating experiments to whole tissue samples. Finally, the feasibility of imaging the 3D distribution of viable tumour cells (as indicated by the RFP emission) is demonstrated by optical-ECT imaging of cleared xenograft tumours using an in-house system

  7. Imaging actinic keratosis by high-definition optical coherence tomography. Histomorphologic correlation

    DEFF Research Database (Denmark)

    Boone, Marc A L M; Norrenberg, Sarah; Jemec, Gregor B E; Del Marmol, Veronique

    2013-01-01

    With the continued development of non-invasive therapies for actinic keratosis such as PDT and immune therapies, the non-invasive diagnosis and monitoring become increasingly relevant. High-definition optical coherence tomography is a high-resolution imaging tool, with micrometre resolution in both...... technique using criteria defined for reflectance confocal microscopy compared to histology. In this pilot study, skin lesions of 17 patients with a histologically proven actinic keratosis were imaged by high-definition optical coherence tomography just before excision and images analysed qualitatively. The...... photodamage. Using features already suggested by reflectance confocal microscopy, the study implies that high-definition optical coherence tomography facilitates in vivo diagnosis of actinic keratosis and allows the grading of different actinic keratosis lesions for increased clinical utility....

  8. Development of CCD-based optical computed tomography and comparison with single-beam optical CT scanner

    International Nuclear Information System (INIS)

    This study reports on the development of CCD-based optical computed tomography (CT) CT-s2. A commercially available 10× fast optical computed tomography scanner (OCTOPUSTM-10X, MGS Research, Inc., Madison, CT, USA) was used for comparison. NIPAM polymer gel dosimeter was used to validate the performance of CT-s2. The gamma pass rate can reach 96.00% when using a 3% dose difference and 3 mm dose-to-agreement criteria. The results of CT-s2 are as good as those of the single-beam optical-CT scanner, but the scanning time of CT-s2 is only one-tenth of that of the single-beam optical-CT scanner

  9. Achromatic registration of quadrature components of the optical spectrum in spectral domain optical coherence tomography

    Energy Technology Data Exchange (ETDEWEB)

    Shilyagin, P A; Gelikonov, G V; Gelikonov, V M; Moiseev, A A; Terpelov, D A [Institute of Applied Physics, Russian Academy of Sciences, Nizhnii Novgorod (Russian Federation)

    2014-07-31

    We have thoroughly investigated the method of simultaneous reception of spectral components with the achromatised quadrature phase shift between two portions of a reference wave, designed for the effective suppression of the 'mirror' artefact in the resulting image obtained by means of spectral domain optical coherence tomography (SD OCT). We have developed and experimentally tested a phase-shifting element consisting of a beam divider, which splits the reference optical beam into the two beams, and of delay lines being individual for each beam, which create a mutual phase difference of ?/2 in the double pass of the reference beam. The phase shift achromatism over a wide spectral range is achieved by using in the delay lines the individual elements with different dispersion characteristics. The ranges of admissible adjustment parameters of the achromatised delay line are estimated for exact and inexact conformity of the geometric characteristics of its components to those calculated. A possibility of simultaneous recording of the close-to-quadrature spectral components with a single linear photodetector element is experimentally confirmed. The suppression of the artefact mirror peak in the OCT-signal by an additional 9 dB relative to the level of its suppression is experimentally achieved when the air delay line is used. Two-dimensional images of the surface positioned at an angle to the axis of the probe beam are obtained with the correction of the 'mirror' artefact while maintaining the dynamic range of the image. (laser biophotonics)

  10. Integrated optical coherence tomography and optical coherence microscopy imaging of human pathology

    Science.gov (United States)

    Lee, Hsiang-Chieh; Zhou, Chao; Wang, Yihong; Aquirre, Aaron D.; Tsai, Tsung-Han; Cohen, David W.; Connolly, James L.; Fujimoto, James G.

    2010-02-01

    Excisional biopsy is the current gold standard for disease diagnosis; however, it requires a relatively long processing time and it may also suffer from unacceptable false negative rates due to sampling errors. Optical coherence tomography (OCT) is a promising imaging technique that provide real-time, high resolution and three-dimensional (3D) images of tissue morphology. Optical coherence microscopy (OCM) is an extension of OCT, combining both the coherence gating and the confocal gating techniques. OCM imaging achieves cellular resolution with deeper imaging depth compared to confocal microscopy. An integrated OCT/OCM imaging system can provide co-registered multiscale imaging of tissue morphology. 3D-OCT provides architectural information with a large field of view and can be used to find regions of interest; while OCM provides high magnification to enable cellular imaging. The integrated OCT/OCM system has an axial resolution of kidney (19), were imaged with OCT and OCM within 2 to 6 hours after excision. The images were compared with H & E histology to identify characteristic features useful for disease diagnosis. The feasibility of visualizing human pathology using integrated OCT/OCM was demonstrated in the pathology laboratory settings.

  11. Efficient sweep buffering in swept source optical coherence tomography using a fast optical switch.

    Science.gov (United States)

    Dhalla, Al-Hafeez; Shia, Kevin; Izatt, Joseph A

    2012-12-01

    We describe a novel buffering technique for increasing the A-scan rate of swept source optical coherence tomography (SSOCT) systems employing low duty cycle swept source lasers. This technique differs from previously reported buffering techniques in that it employs a fast optical switch, capable of switching in 60 ns, instead of a fused fiber coupler at the end of the buffering stage, and is therefore appreciably more power efficient. The use of the switch also eliminates patient exposure to light that is not used for imaging that occurs at the end of the laser sweep, thereby increasing the system sensitivity. We also describe how careful management of polarization can remove undesirable artifacts due to polarization mode dispersion. In addition, we demonstrate how numerical compensation techniques can be used to modify the signal from a Mach-Zehnder interferometer (MZI) clock obtained from the original sweep to recalibrate the buffered sweep, thereby reducing the complexity of systems employing lasers with integrated MZI clocks. Combining these methods, we constructed an SSOCT system employing an Axsun technologies laser with a sweep rate of 100kHz and 6dB imaging range of 5.5mm. The sweep rate was doubled with sweep buffering to 200 kHz, and the imaging depth was extended to 9 mm using coherence revival. We demonstrated the feasibility of this system by acquiring images of the anterior segments and retinas of healthy human volunteers. PMID:23243559

  12. Optical Coherence Tomography for the Evaluation of Retinal and Optic Nerve Morphology in Animal Subjects: Practical Considerations

    OpenAIRE

    McLellan, Gillian J; Rasmussen, Carol A

    2012-01-01

    Optical coherence tomography (OCT) is a non-invasive, non-contact imaging technique capable of producing high-resolution images of the retina and optic nerve. These images provide information that is useful for following the progression and/or resolution of posterior segment disease. Rapid advances in OCT technology allow the acquisition of increasingly detailed images, approaching the original goal of providing in vivo histopathology. Increases in scan acquisition speeds and axial resolution...

  13. Progress on developing wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice

    Science.gov (United States)

    Zam, Azhar; Zhang, Pengfei; Jian, Yifan; Sarunic, Marinko V.; Bonora, Stefano; Pugh, Edward N.; Zawadzki, Robert J.

    2015-03-01

    We present a new design for a wavefront sensorless adaptive optics (WS-AO) Fourier domain optical coherence tomography (FD-OCT) system for small animal retinal imaging in vivo. Without the optical complications necessary for inclusion of a wavefront sensor in the optical system, this version of WS-AO FD-OCT system has a simplified optical design, including elimination of long focal length scanning optics and optical conjugation of vertical and horizontal scanners. This modification provides a modular large Field of View for retinal screening (25 degree visual angle), while also allowing a "zoom" capability for allocating all the scanning resources to a smaller region of interest, allowing high resolution aberration-corrected imaging. In the present system we used a 0 Dpt contact lens to stabilize the mouse eye position and to allow long duration imaging. Defocus (axial focus position) in our system is controlled by the collimation of the OCT sample arm entrance beam.

  14. Spectral fractionation detection of gold nanorod contrast agents using optical coherence tomography.

    Science.gov (United States)

    Jia, Yali; Liu, Gangjun; Gordon, Andrew Y; Gao, Simon S; Pechauer, Alex D; Stoddard, Jonathan; McGill, Trevor J; Jayagopal, Ashwath; Huang, David

    2015-02-23

    We demonstrate the proof of concept of a novel Fourier-domain optical coherence tomography contrast mechanism using gold nanorod contrast agents and a spectral fractionation processing technique. The methodology detects the spectral shift of the backscattered light from the nanorods by comparing the ratio between the short and long wavelength halves of the optical coherence tomography signal intensity. Spectral fractionation further divides the halves into sub-bands to improve spectral contrast and suppress speckle noise. Herein, we show that this technique can detect gold nanorods in intralipid tissue phantoms. Furthermore, cellular labeling by gold nanorods was demonstrated using retinal pigment epithelial cells in vitro. PMID:25836459

  15. Reconstruction methods for sound visualization based on acousto-optic tomography

    DEFF Research Database (Denmark)

    Torras Rosell, Antoni; Lylloff, Oliver; Barrera Figueroa, Salvador; Jacobsen, Finn

    2013-01-01

    tomographic techniques. The filtered back projection (FBP) method is the most popular reconstruction algorithm used for tomography in many fields of science. The present study takes the performance of the FBP method in sound visualization as a reference and investigates the use of alternative methods commonly......The visualization of acoustic fields using acousto-optic tomography has recently proved to yield satisfactory results in the audible frequency range. The current implementation of this visualization technique uses a laser Doppler vibrometer (LDV) to measure the acousto-optic effect, that is, the...

  16. Fingerprint imaging from the inside of a finger with full-field optical coherence tomography.

    Science.gov (United States)

    Auksorius, Egidijus; Boccara, A Claude

    2015-11-01

    Imaging below fingertip surface might be a useful alternative to the traditional fingerprint sensing since the internal finger features are more reliable than the external ones. One of the most promising subsurface imaging technique is optical coherence tomography (OCT), which, however, has to acquire 3-D data even when a single en face image is required. This makes OCT inherently slow for en face imaging and produce unnecessary large data sets. Here we demonstrate that full-field optical coherence tomography (FF-OCT) can be used to produce en face images of sweat pores and internal fingerprints, which can be used for the identification purposes. PMID:26601009

  17. Optical coherence tomography in papilledema and pseudopapilledema with and without optic nerve head drusen

    Directory of Open Access Journals (Sweden)

    Shikha Talwar Bassi

    2014-01-01

    Full Text Available Aim: To compare the spectral domain optical coherence tomography (SD-OCT findings of the optic disc and the peripapillary retina of patients with a true papilledema and pseudopapilledema with and without optic nerve head drusen (ONHD. Study Design: Retrospective Case Control Study. Subjects and Methods: Peripapillary retinal nerve fiber layer (PPRNFL thickness as depicted by SD-OCT of 94 eyes of 66 patients with papilledema (30 eyes, pseudopapiledema (31 eyes, and normal controls (33 eyes was analyzed. The mean RNFL thickness, total retinal thickness (TRT at a superior and inferior edge of the disc and the quadrant wise topography of increased RNFL were compared in all three groups. Sensitivity, specificity, and area under the receiver operating characteristic curve (AROC were calculated for all the parameters. Results: The median RNFL thickness was 185.4 (129.5-349.3 ?m, 122.3 (109-156.3 ?m and 91.62 ± 7 ?m in papilledema, pseudopapilledema, and controls, respectively. Papilledema group had thicker PPRNFL in all quadrants except temporal quadrant. TRT was thicker in papilledema and pseudopapilledema compared to controls. ONHD could be directly visualized as high reflective clumps in the sub-retinal space or the RNFL in 30 eyes. Increased RNFL thickness in all four quadrants was noted 43.3% in papilledema and 9.7% in pseudopapilledema. Normal RNFL thickness in all four quadrants was noted in 0% in papilledema and 32.3% in pseudopapilledema. Nasal RNFL had the highest AROC (0.792 indicating high diagnostic ability to differentiate papilledema from pseudopapilledema. Conclusion: SD-OCT can be used as a tool to differentiate between papilledema and pseudopapilledema.

  18. Optical coherence tomography: Monte Carlo simulation and improvement by optical amplification

    DEFF Research Database (Denmark)

    Tycho, Andreas

    2002-01-01

    An advanced novel Monte Carlo simulation model of the detection process of an optical coherence tomography (OCT) system is presented. For the first time it is shown analytically that the applicability of the incoherent Monte Carlo approach to model the heterodyne detection process of an OCT system is firmly justified. This is obtained by calculating the heterodyne mixing of the reference and sample beams in a plane conjugate to the discontinuity in the sample probed by the system. Using this approach, a novel expression for the OCT signal is derived, which only depends uopon the intensity distribution of the light from the sample and the reference beam. To adequately estimate the intensity distributions, a novel method of modeling a focused Gaussian beam using Monte Carlo simulation is developed. This method is then combined with the derived expression for the OCT signal into a new Monte Carlo model of the OCT signal. The OCT signal from a scattering medium are obtained for several beam and sample geometries using the new Monte Carlo model, and when comparing to results of an analytical model based on the extended Huygens-Fresnel principle excellent agreement is obtained. With the greater flexibility of Monte Carlo simulations, this new model is demonstrated to be excellent as a numerical phantom, i.e., as a substitute for otherwise difficult experiments. Finally, a new model of the signal-to-noise ratio (SNR) of an OCT system with optical amplification of the light reflected from the sample is derived, and discussed. Using this model, the conclusion is reached that an optical amplifier will enable substantial improvement of the SNR for OCT systems dominated by receiver noise. Receiver noise is of practical concern because of the (often) limited irradiance of suitable optical sources for OCT, and high insertion loss of the fast optical delay-line scanners that are necessary for fast imaging. Correspondingly, an increase in penetration depth of about 30-100% is demonstrated for OCT imaging in skin based on resultsobtained with the new Monte Carlo model. Accordingly, the two new models are demonstrated as valuable tools for future development and optimization of OCT systems to extend the applications of the system in biomedicine.

  19. Theoretical study of Acousto-optical coherence tomography using random phase jumps on US and light

    CERN Document Server

    Gross, Michel; Ramaz, François; Farahi, Salma; Boccara, A C

    2011-01-01

    Acousto-optical coherence tomography (AOCT) is a variant of acousto-optic imaging (also called ultrasonic modulation imaging) that makes it possible to get the z resolution with acoustic and optic continuous wave beams. We describe here theoretically the AOCT effect, and we show that the acousto-optic "tagged photons" remain coherent if they are generated within a specific z region of the sample. We quantify the z selectivity for both the "tagged photon" field and for the Lesaffre et al. [Opt. Express 17, 18211 (2009)] photorefractive signal.

  20. Tomography

    International Nuclear Information System (INIS)

    Already widely accepted in medicine, tomography can also be useful in industry. The theory behind tomography and a demonstration of the technique to inspect a motorcycle carburetor is presented. To demonstrate the potential of computer assisted tomography (CAT) to accurately locate defects in three dimensions, a sectioned 5 cm gate valve with a shrink cavity made visible by the sectioning was tomographically imaged using a Co-60 source. The tomographic images revealed a larger cavity below the sectioned surface. The position of this cavity was located with an in-plane and axial precision of approximately +-1 mm. The volume of the cavity was estimated to be approximately 40 mm3

  1. Multi-parametric imaging of murine brain using spectral and time domain optical coherence tomography

    Science.gov (United States)

    Bukowska, Danuta; Ruminski, Daniel; Szlag, Daniel; Grulkowski, Ireneusz; Wlodarczyk, Jakub; Szkulmowski, Maciej; Wilczynski, Grzegorz; Gorczynska, Iwona; Wojtkowski, Maciej

    2012-10-01

    Examination of brain functions in small animal models may help improve the diagnosis and treatment of neurological conditions. Transcranial imaging of small rodents' brains poses a major challenge for optical microscopy. Another challenge is to reduce the measurement time. We describe methods and algorithms for three-dimensional assessment of blood flow in the brains of small animals, through the intact skull, using spectral and time domain optical coherence tomography. By introducing a resonant scanner to the optical setup of the optical coherence tomography (OCT) system, we have developed and applied a high-speed spectral OCT technique that allows us to vary the imaging range of flow and to shorten measurement time. Multi-parameter signal analysis enables us to obtain both qualitative and quantitative information about flow velocity from the same set of data.

  2. Systematic calibration of an integrated x-ray and optical tomography system for preclinical radiation research

    International Nuclear Information System (INIS)

    Purpose: The cone beam computed tomography (CBCT) guided small animal radiation research platform (SARRP) has been developed for focal tumor irradiation, allowing laboratory researchers to test basic biological hypotheses that can modify radiotherapy outcomes in ways that were not feasible previously. CBCT provides excellent bone to soft tissue contrast, but is incapable of differentiating tumors from surrounding soft tissue. Bioluminescence tomography (BLT), in contrast, allows direct visualization of even subpalpable tumors and quantitative evaluation of tumor response. Integration of BLT with CBCT offers complementary image information, with CBCT delineating anatomic structures and BLT differentiating luminescent tumors. This study is to develop a systematic method to calibrate an integrated CBCT and BLT imaging system which can be adopted onboard the SARRP to guide focal tumor irradiation. Methods: The integrated imaging system consists of CBCT, diffuse optical tomography (DOT), and BLT. The anatomy acquired from CBCT and optical properties acquired from DOT serve as a priori information for the subsequent BLT reconstruction. Phantoms were designed and procedures were developed to calibrate the CBCT, DOT/BLT, and the entire integrated system. Geometrical calibration was performed to calibrate the CBCT system. Flat field correction was performed to correct the nonuniform response of the optical imaging system. Absolute emittance calibration was performed to convert the camera readout to the emittance at the phantom or animal surface, which enabled the direct reconstruction of the bioluminescence source strength. Phantom and mouse imaging were performed to validate the calibration. Results: All calibration procedures were successfully performed. Both CBCT of a thin wire and a euthanized mouse revealed no spatial artifact, validating the accuracy of the CBCT calibration. The absolute emittance calibration was validated with a 650 nm laser source, resulting in a 3.0% difference between simulated and measured signal. The calibration of the entire system was confirmed through the CBCT and BLT reconstruction of a bioluminescence source placed inside a tissue-simulating optical phantom. Using a spatial region constraint, the source position was reconstructed with less than 1 mm error and the source strength reconstructed with less than 24% error. Conclusions: A practical and systematic method has been developed to calibrate an integrated x-ray and optical tomography imaging system, including the respective CBCT and optical tomography system calibration and the geometrical calibration of the entire system. The method can be modified and adopted to calibrate CBCT and optical tomography systems that are operated independently or hybrid x-ray and optical tomography imaging systems

  3. Systematic calibration of an integrated x-ray and optical tomography system for preclinical radiation research

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Yidong, E-mail: yidongyang@med.miami.edu [Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231 and Department of Radiation Oncology, University of Miami School of Medicine, Miami, Florida 33136 (United States); Wang, Ken Kang-Hsin; Wong, John W. [Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231 (United States); Eslami, Sohrab; Iordachita, Iulian I. [Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, Maryland 21218 (United States); Patterson, Michael S. [Juravinski Cancer Centre and Department of Medical Physics and Applied Radiation Sciences, McMaster University, Hamilton, Ontario L8S4K1 (Canada)

    2015-04-15

    Purpose: The cone beam computed tomography (CBCT) guided small animal radiation research platform (SARRP) has been developed for focal tumor irradiation, allowing laboratory researchers to test basic biological hypotheses that can modify radiotherapy outcomes in ways that were not feasible previously. CBCT provides excellent bone to soft tissue contrast, but is incapable of differentiating tumors from surrounding soft tissue. Bioluminescence tomography (BLT), in contrast, allows direct visualization of even subpalpable tumors and quantitative evaluation of tumor response. Integration of BLT with CBCT offers complementary image information, with CBCT delineating anatomic structures and BLT differentiating luminescent tumors. This study is to develop a systematic method to calibrate an integrated CBCT and BLT imaging system which can be adopted onboard the SARRP to guide focal tumor irradiation. Methods: The integrated imaging system consists of CBCT, diffuse optical tomography (DOT), and BLT. The anatomy acquired from CBCT and optical properties acquired from DOT serve as a priori information for the subsequent BLT reconstruction. Phantoms were designed and procedures were developed to calibrate the CBCT, DOT/BLT, and the entire integrated system. Geometrical calibration was performed to calibrate the CBCT system. Flat field correction was performed to correct the nonuniform response of the optical imaging system. Absolute emittance calibration was performed to convert the camera readout to the emittance at the phantom or animal surface, which enabled the direct reconstruction of the bioluminescence source strength. Phantom and mouse imaging were performed to validate the calibration. Results: All calibration procedures were successfully performed. Both CBCT of a thin wire and a euthanized mouse revealed no spatial artifact, validating the accuracy of the CBCT calibration. The absolute emittance calibration was validated with a 650 nm laser source, resulting in a 3.0% difference between simulated and measured signal. The calibration of the entire system was confirmed through the CBCT and BLT reconstruction of a bioluminescence source placed inside a tissue-simulating optical phantom. Using a spatial region constraint, the source position was reconstructed with less than 1 mm error and the source strength reconstructed with less than 24% error. Conclusions: A practical and systematic method has been developed to calibrate an integrated x-ray and optical tomography imaging system, including the respective CBCT and optical tomography system calibration and the geometrical calibration of the entire system. The method can be modified and adopted to calibrate CBCT and optical tomography systems that are operated independently or hybrid x-ray and optical tomography imaging systems.

  4. Optical 3D-storage in sol-gel materials with a reading by Optical Coherence Tomography-technique

    CERN Document Server

    Reyes-Esqueda, J A; Lecaque, R; Ramaz, F; Forget, B C; Dubois, A; Briat, B; Boccara, C; Roger, G; Canva, M; Levy, Y; Chaput, F; Boilot, J P; Reyes-Esqueda, Jorge-Alejandro; Vabre, Laurent; Lecaque, Romain; Ramaz, Francois; Forget, Benoit C.; Dubois, Arnaud; Briat, Bernard; Boccara, Claude; Roger, Gisele; Canva, Michael; Levy, Yves; Chaput, Frederic; Boilot, Jean-Pierre

    2003-01-01

    We report on the recording of 3D optical memories in sol-gel materials by using a non-linear absorption effect. This effect induces a local change of the optical properties of the material which is read and quantified with a high resolution full-field Optical Coherence Tomography setup. It is the first time that this technique is used for this purpose. Data recording was performed by focused picosecond (ps) single-pulse irradiation at 1064 nm with energy densities of 10 and 33 J/cm2 per pulse.

  5. In-situ monitoring of surface post-processing in large aperture fused silica optics with Optical Coherence Tomography

    Energy Technology Data Exchange (ETDEWEB)

    Guss, G M; Bass, I l; Hackel, R P; Mailhiot, C; Demos, S G

    2008-02-08

    Optical Coherence Tomography is explored as a method to image laser-damage sites located on the surface of large aperture fused silica optics during post-processing via CO{sub 2} laser ablation. The signal analysis for image acquisition was adapted to meet the sensitivity requirements for this application. A long-working distance geometry was employed to allow imaging through the opposite surface of the 5-cm thick optic. The experimental results demonstrate the potential of OCT for remote monitoring of transparent material processing applications.

  6. Applying LED in full-field optical coherence tomography for gastrointestinal endoscopy

    Science.gov (United States)

    Yang, Bor-Wen; Wang, Yu-Yen; Juan, Yu-Shan; Hsu, Sheng-Jie

    2015-08-01

    Optical coherence tomography (OCT) has become an important medical imaging technology due to its non-invasiveness and high resolution. Full-field optical coherence tomography (FF-OCT) is a scanning scheme especially suitable for en face imaging as it employs a CMOS/CCD device for parallel pixels processing. FF-OCT can also be applied to high-speed endoscopic imaging. Applying cylindrical scanning and a right-angle prism, we successfully obtained a 360° tomography of the inner wall of an intestinal cavity through an FF-OCT system with an LED source. The 10-?m scale resolution enables the early detection of gastrointestinal lesions, which can increase detection rates for esophageal, stomach, or vaginal cancer. All devices used in this system can be integrated by MOEMS technology to contribute to the studies of gastrointestinal medicine and advanced endoscopy technology.

  7. Correlation between polarization sensitive optical coherence tomography and second harmonic generation microscopy in skin

    OpenAIRE

    Le, Viet-Hoan; lee, Seunghun; Kim, Bumju; Yoon, Yeoreum; Yoon, Calvin J.; Chung, Wan Kyun; Kim, Ki Hean

    2015-01-01

    Both polarization sensitive optical coherence tomography (PS-OCT) and second harmonic generation (SHG) microscopy are 3D optical imaging methods providing information related to collagen in the skin. PS-OCT provides birefringence information which is due to the collagen composition of the skin. SHG microscopy visualizes collagen fibers in the skin based on their SHG property. These two modalities have been applied to the same skin pathologies associated with collagen changes, but their relati...

  8. Diagnostic value of optical coherence tomography for intracranial pressure in idiopathic intracranial hypertension

    DEFF Research Database (Denmark)

    Skau, M; Yri, H; Sander, B; Gerds, TA; Milea, D; Jensen, R

    2013-01-01

    BACKGROUND: Idiopathic intracranial hypertension (IIH) is a condition of raised intracranial pressure (ICP) in the absence of space-occupying lesions or other known etiology. It primarily affects young obese females, and potentially causes permanent visual loss due to papilledema and secondary optic atrophy. The aim of this study was to evaluate the diagnostic value of optical coherence tomography (OCT) as a marker for CSF opening pressure in patients with idiopathic intracranial hypertension (I...

  9. Broadband Fourier domain mode-locked laser for optical coherence tomography at 1060 nm

    DEFF Research Database (Denmark)

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang; Torzicky, Teresa; Pircher, Michael; Biedermann, Benjamin R.; Pedersen, Christian; Hitzenberger, Christoph K.; Huber, Robert; Andersen, Peter E.

    2012-01-01

    Optical coherence tomography (OCT) in the 1060nm range is interesting for in vivo imaging of the human posterior eye segment (retina, choroid, sclera) due to low absorption in water and deep penetration into the tissue. Rapidly tunable light sources, such as Fourier domain mode-locked (FDML) lasers, enable acquisition of densely sampled three-dimensional datasets covering a wide field of view. However, semiconductor optical amplifiers (SOAs)-the typical laser gain media for swept sources-for the...

  10. Pump-probe quantum state tomography in a semiconductor optical amplifier.

    Science.gov (United States)

    Grosse, N B; Owschimikow, N; Aust, R; Lingnau, B; Koltchanov, A; Kolarczik, M; Lüdge, K; Woggon, U

    2014-12-29

    Pump-probe quantum state tomography was applied to the transmission of a coherent state through an In(Ga)As based quantum dot optical amplifier during the interaction with an optical pump pulse. The Wigner function and the statistical moments of the field were extracted and used to determine the degree of population inversion and the signal-to-noise ratio in a sub-picosecond time window. PMID:25607214

  11. Acousto-optical coherence tomography with a digital holographic detection scheme

    OpenAIRE

    Benoit A La Guillaume, Emilie; Farahi, Salma; Bossy, Emmanuel; Gross, Michel; Ramaz, François

    2012-01-01

    Acousto-optical coherence tomography (AOCT) consists in using random phase jumps on ultrasound and light to achieve a millimeter resolution when imaging thick scattering media. We combined this technique with heterodyne off-axis digital holography. Two-dimensional images of absorbing objects embedded in scattering phantoms are obtained with a good signal-to-noise ratio. We study the impact of the phase modulation characteristics on the amplitude of the acousto-optic signal a...

  12. Derivation of a Monte Carlo method for modeling heterodyne detection in optical coherence tomography systems

    DEFF Research Database (Denmark)

    Tycho, Andreas; Jørgensen, Thomas Martini; Andersen, Peter E.

    2002-01-01

    A Monte Carlo (MC) method for modeling optical coherence tomography (OCT) measurements of a diffusely reflecting discontinuity emb edded in a scattering medium is presented. For the first time to the authors' knowledge it is shown analytically that the applicability of an MC approach to this optical geometry is firmly justified, because, as we show, in the conjugate image plane the field reflected from the sample is delta-correlated from which it follows that the heterodyne signal is calculated ...

  13. Design and Construction of an Optical Computed Tomography Scanner for Polymer Gel Dosimetry Application

    OpenAIRE

    Zakariaee, Seyed Salman; Mesbahi, Asghar; Keshtkar, Ahmad; Azimirad, Vahid

    2014-01-01

    Polymer gel dosimeter is the only accurate three dimensional (3D) dosimeter that can measure the absorbed dose distribution in a perfect 3D setting. Gel dosimetry by using optical computed tomography (OCT) has been promoted by several researches. In the current study, we designed and constructed a prototype OCT system for gel dosimetry. First, the electrical system for optical scanning of the gel container using a Helium-Neon laser and a photocell was designed and constructed. Then, the mecha...

  14. Crystal Optical Properties of Inhomogeneous Plates and the Problems of Polarization Tomography of Photoelastic Materials

    OpenAIRE

    Kushnir O.; Nek P.; Vlokh R.; Kukhtarev N

    2007-01-01

    Using the Jones matrix formalism, crystal optical properties of inhomogeneous material consisting of a pile of weakly birefringent plates are analysed in relation to the cell model adopted in polarization tomography of 3D dielectric tensor field in photoelastic media. It is shown that the material manifests in general an "apparent" optical gyration caused by different orientations of the plates. Relations between the polarimetric parameters and the dielectric tensor componen...

  15. Magnetic induction tomography using an all-optical ??Rb atomic magnetometer.

    Science.gov (United States)

    Wickenbrock, Arne; Jurgilas, Sarunas; Dow, Albert; Marmugi, Luca; Renzoni, Ferruccio

    2014-11-15

    We demonstrate magnetic induction tomography (MIT) with an all-optical atomic magnetometer. Our instrument creates a conductivity map of conductive objects. Both the shape and size of the imaged samples compare very well with the actual shape and size. Given the potential of all-optical atomic magnetometers for miniaturization and extreme sensitivity, the proof-of-principle presented in this Letter opens up promising avenues in the development of instrumentation for MIT. PMID:25490470

  16. Non-Invasive Detection of Early Retinal Neuronal Degeneration by Ultrahigh Resolution Optical Coherence Tomography

    OpenAIRE

    Tudor, Debbie; Kajić, Vedran; Rey, Sara; Erchova, Irina; Považay, Boris; Hofer, Bernd; Powell, Kate A.; Marshall, David; Rosin, Paul L.; Drexler, Wolfgang; Morgan, James E

    2014-01-01

    Optical coherence tomography (OCT) has revolutionises the diagnosis of retinal disease based on the detection of microscopic rather than subcellular changes in retinal anatomy. However, currently the technique is limited to the detection of microscopic rather than subcellular changes in retinal anatomy. However, coherence based imaging is extremely sensitive to both changes in optical contrast and cellular events at the micrometer scale, and can generate subtle changes in the spectral content...

  17. Coherent noise-free ophthalmic imaging by spectral optical coherence tomography

    International Nuclear Information System (INIS)

    In this contribution we examine a methodology to avoid parasitic cross-correlation terms in spectral optical coherence tomography (SOCT) images. The optimal conditions of optical power and exposure time are found theoretically and confirmed experimentally to ensure that parasitic images are hidden under the shot noise. An upper limit on useful exposures may then be estimated. In a case of SOCT imaging of the retina this limit is below the ANSI safety limit

  18. Optical coherence tomography diagnostics for onco–urology. Review of clinical perspectives

    OpenAIRE

    Sergiy Kharchenko; Jan Adamowicz; Maciej Wojtkowski; Tomasz Drewa

    2013-01-01

    Introduction. Optical coherence tomography (OCT) is being investigated widely for use in urologic pathology. The current imaging of urogenital cancers cannot be perfect, thus, routine methods demands new updates or inventions of alternative radiological scope. OCT presents so–called “live” optical biopsy. The authors aim to review this modality for uro–oncological purposes.Matherial and methods. A series of 37 publications between 1989 and 2012 was selected and cited from GoogleScholar and Pu...

  19. Optical coherence tomography based on intensity correlations of quasi-thermal light

    OpenAIRE

    Zerom, Petros; Piredda, Giovanni; Boyd, Robert W.; Shapiro, Jeffrey H.

    2009-01-01

    We show theoretically that the longitudinal resolution of conventional optical coherence tomography can be improved by a factor of radic2 when a two-photon (as opposed to a single-photon) sensitive detector is used, and we present preliminary supporting results.

  20. Polarization Sensitive Optical Coherence Tomography for Blood Glucose Monitoring in Human Subjects

    CERN Document Server

    Solanki, Jitendra; Sen, Pratima; Andrews, Joseph Thomas

    2012-01-01

    A device based on Polarization sensitive optical coherence tomography is developed to monitor blood glucose levels in human subjects. The device was initially tested with tissue phantom. The measurements with human subjects for various glucose concentration levels are found to be linearly dependent on the degree of circular polarization obtainable from the PS-OCT.

  1. Consensus standards for acquisition, measurement, and reporting of intravascular optical coherence tomography studies

    DEFF Research Database (Denmark)

    Tearney, Guillermo J; Regar, Evelyn; Akasaka, Takashi; Adriaenssens, Tom; Barlis, Peter; Bezerra, Hiram G; Bouma, Brett; Bruining, Nico; Cho, Jin-Man; Chowdhary, Saqib; Costa, Marco A; de Silva, Ranil; Dijkstra, Jouke; Di Mario, Carlo; Dudeck, Darius; Falk, Erling; Feldman, Marc D; Fitzgerald, Peter; Garcia, Hector Hernan Caro; Gonzalo, Nieves; Granada, Juan F; Guagliumi, Giulio; Holm, Niels Ramsing; Honda, Yasuhiro; Ikeno, Fumiaki; Kawasaki, Masanori; Kochman, Janusz; Koltowski, Lukasz; Kubo, Takashi; Kume, Teruyoshi; Kyono, Hiroyuki; Lam, Cheung Chi Simon; Lamouche, Guy; Lee, David P; Leon, Martin B; Maehara, Akiko; Manfrini, Olivia; Mintz, Gary S; Mizuno, Kyiouchi; Morel, Marie-Angéle; Nadkarni, Seemantini; Okura, Hiroyuki; Otake, Hiromasa; Pietrasik, Arkadiusz; Prati, Francesco; Räber, Lorenz; Radu, Maria D; Rieber, Johannes; Riga, Maria; Rollins, Andrew; Rosenberg, Mireille; Sirbu, Vasile; Serruys, Patrick W J C; Shimada, Kenei; Shinke, Toshiro; Shite, Junya; Siegel, Eliot; Sonada, Shinjo; Suter, Melissa; Takarada, Shigeho; Tanaka, Atsushi; Terashima, Mitsuyasu; Troels, Thim; Uemura, Shiro; Ughi, Giovanni J; van Beusekom, Heleen M M; van der Steen, Antonius F W; van Es, Gerrit-Ann; van Soest, Gijs; Virmani, Renu; Waxman, Sergio; Weissman, Neil J; Weisz, Giora

    2012-01-01

    The purpose of this document is to make the output of the International Working Group for Intravascular Optical Coherence Tomography (IWG-IVOCT) Standardization and Validation available to medical and scientific communities, through a peer-reviewed publication, in the interest of improving the diagnosis and treatment of patients with atherosclerosis, including coronary artery disease.

  2. Optical Coherence Tomography and Biomolecular Imaging with Coherent Raman Scattering Microscopy

    DEFF Research Database (Denmark)

    Andersson-Engels, Stefan; Andersen, Peter E.

    2014-01-01

    The Special Section on Selected Topics in Biophotonics: Optical Coherence Tomography and Biomolecular Imaging with Coherent Raman Scattering Microscopy comprises two invited review papers and several contributed papers from the summer school Biophotonics ’13, as well as contributed papers within this general scope.

  3. Consensus standards for acquisition, measurement, and reporting of intravascular optical coherence tomography studies

    DEFF Research Database (Denmark)

    Tearney, Guillermo J; Regar, Evelyn; Akasaka, Takashi; Adriaenssens, Tom; Barlis, Peter; Bezerra, Hiram G; Bouma, Brett; Bruining, Nico; Cho, Jin-Man; Chowdhary, Saqib; Costa, Marco A; de Silva, Ranil; Dijkstra, Jouke; Di Mario, Carlo; Dudeck, Darius; Falk, Erling; Feldman, Marc D; Fitzgerald, Peter; Garcia, Hector Hernan Caro; Gonzalo, Nieves; Granada, Juan F; Guagliumi, Giulio; Holm, Niels Ramsing; Honda, Yasuhiro; Ikeno, Fumiaki; Kawasaki, Masanori; Kochman, Janusz; Koltowski, Lukasz; Kubo, Takashi; Kume, Teruyoshi; Kyono, Hiroyuki; Lam, Cheung Chi Simon; Lamouche, Guy; Lee, David P; Leon, Martin B; Maehara, Akiko; Manfrini, Olivia; Mintz, Gary S; Mizuno, Kyiouchi; Morel, Marie-Angéle; Nadkarni, Seemantini; Okura, Hiroyuki; Otake, Hiromasa; Pietrasik, Arkadiusz; Prati, Francesco; Räber, Lorenz; Radu, Maria D; Rieber, Johannes; Riga, Maria; Rollins, Andrew; Rosenberg, Mireille; Sirbu, Vasile; Serruys, Patrick W J C; Shimada, Kenei; Shinke, Toshiro; Shite, Junya; Siegel, Eliot; Sonada, Shinjo; Suter, Melissa; Takarada, Shigeho; Tanaka, Atsushi; Terashima, Mitsuyasu; Troels, Thim; Uemura, Shiro; Ughi, Giovanni J; van Beusekom, Heleen M M; van der Steen, Antonius F W; van Es, Gerrit-Ann; van Soest, Gijs; Virmani, Renu; Waxman, Sergio; Weissman, Neil J; Weisz, Giora

    2012-01-01

    The purpose of this document is to make the output of the International Working Group for Intravascular Optical Coherence Tomography (IWG-IVOCT) Standardization and Validation available to medical and scientific communities, through a peer-reviewed publication, in the interest of improving the di...

  4. The predictive value of optical coherence tomography after grid laser photocoagulation for diffuse diabetic macular oedema

    DEFF Research Database (Denmark)

    Soliman, W.; Sander, B.; Soliman, K.A.E.N.; Yehya, S.; Rahamn, M.S.A.; Larsen, Michael

    2008-01-01

    Purpose: To assess the predictive value of optical coherence tomography (OCT) mapping of retinal thickness and intraretinal morphological changes after macular grid for diffuse diabetic macular oedema (DMO). Methods: We carried out a prospective, non-controlled, case series study, in which 28 con...

  5. Volumetric Doppler imaging of small animal brain using spectral and time domain optical coherence tomography

    Science.gov (United States)

    Bukowska, Danuta; Grulkowski, Ireneusz; Wilczynski, Grzegorz; Tamborski, Szymon; Ruminski, Daniel; Wlodarczyk, Jakub; Szlag, Daniel; Szkulmowski, Maciej; Kowalczyk, Andrzej; Wojtkowski, Maciej

    2011-03-01

    In this paper we demonstrate applicability of Optical Coherence Tomography (OCT) for three-dimensional analysis of blood flow in brain of small animals. We proposed scanning protocols that enable receiving both qualitative and quantitative information about flow. Presented data are obtained with a laboratory high resolution and high speed Spectral OCT system. Data analysis is performed using joint Spectral and Time domain OCT.

  6. Imaging of basal cell carcinoma by high-definition optical coherence tomography

    DEFF Research Database (Denmark)

    Boone, M A L M; Norrenberg, S; Jemec, G B E; Del Marmol, V

    2012-01-01

    With the continued development of noninvasive therapies for basal cell carcinoma (BCC) such as photodynamic therapy and immune therapies, noninvasive diagnosis and monitoring become increasingly relevant. High-definition optical coherence tomography (HD-OCT) is a high-resolution imaging tool, with...

  7. The utility of three-dimensional optical projection tomography in nerve injection injury imaging.

    Czech Academy of Sciences Publication Activity Database

    Cvetko, E.; ?apek, Martin; Damjanovska, M.; Reina, M. A.; Eržen, I.; Stopar-Pintari?, T.

    2015-01-01

    Ro?. 70, ?. 8 (2015), s. 939-947. ISSN 0003-2409 R&D Projects: GA ?R(CZ) GA13-12412S; GA MŠk(CZ) LH13028 Institutional support: RVO:67985823 Keywords : optical projection tomography * 3D nerve visualization * nerve disruption Subject RIV: EA - Cell Biology Impact factor: 3.382, year: 2014

  8. Morphological features in eyes with endophthalmitis after cataract surgery - histopathology and optical coherence tomography assessment

    DEFF Research Database (Denmark)

    Solborg Bjerrum, Søren; Prause, Jan Ulrik; Fuchs, Josefine; la Cour, Morten; Kiilgaard, Jens Folke

    2016-01-01

    PURPOSE: To assess the ocular damage that occurs in eyes with postoperative endophthalmitis after cataract surgery (PE) based on optical coherence tomography (OCT) retinal scans of PE eyes and histological specimens of eyes removed due to PE. METHODS: Case-control study and case series. Fifty...

  9. Combined dynamic and static optical tomography for prediction of treatment outcome in breast cancer patients

    Science.gov (United States)

    Gunther, Jacqueline; Lim, Emerson; Kim, Hyun Keol; Flexman, Molly; Zweck, Lukas; Arora, Sindhiya; Refice, Susan; Brown, Mindy; Kalinsky, Kevin; Hershman, Dawn; Hielscher, Andreas H.

    2015-07-01

    We explored evidence that a combination of dynamic and static diffuse optical tomography can be used to predict treatment response in patients undergoing neo adjuvant chemotherapy. Both blood chromophore concentrations and hemodynamic signatures were measured over the 5-month course of treatment.

  10. Improved quality of optical coherence tomography imaging of basal cell carcinomas using speckle reduction

    DEFF Research Database (Denmark)

    Mogensen, Mette; Jørgensen, Thomas Martini; Thrane, Lars; Nurnberg, Birgit Meinecke; Jemec, Gregor Borut Ernst

    2010-01-01

    BACKGROUND: Optical coherence tomography (OCT) is a possible imaging method for delineation of non-melanoma skin cancer. Speckle noise is the dominant noise contribution in OCT images; it limits the ability to identify cellular structures especially skin cancer. QUESTIONS ADDRESSED: This report s...

  11. In vivo Imaging of Sarcoptes scabiei Infestation Using Optical Coherence Tomography

    DEFF Research Database (Denmark)

    Banzhaf, Christina Alette; Themstrup, Lotte; Ring, Hans Christian; Welzel, Julia; Mogensen, Mette; Jemec, Gregor Borut Ernst

    2013-01-01

    BACKGROUND: Sarcoptes scabiei can be visualized with different imaging tools. Optical coherence tomography (OCT) may have the potential to describe the changes in skin morphology due to scabies infestation and visualize the parasite. METHODS: Five patients from the Departments of Dermatology...

  12. Complete Two-dimensional Muellermetric Imaging of Biological Tissue Using Heterodyned Optical Coherence Tomography

    CERN Document Server

    Liu, Xue; Shahriar, M S

    2010-01-01

    A polarization-sensitive optical coherence tomography system based on heterodyning and filtering techniques is built to perform Stokesmetric imaging of different layers of depths in a porcine tendon sample. The complete 4\\times4 backscattering Muellermetric images of one layer are acquired using such a system. The images reveal information indiscernible from a conventional OCT system.

  13. Optimizing magnetomotive contrast of SPIO-labeled platelets for thrombosis imaging in optical coherence tomography

    OpenAIRE

    Oldenburg, Amy L; Spivak, Dmitry; Wu, Gongting; Tsui, Frank; Fischer, Thomas H

    2012-01-01

    Rehydratable, lyophilized platelets loaded with superparamagnetic iron oxides (SPIOs) has the potential to provide magnetomotive imaging contrast to sites of vascular damage, including thrombosis complicating atherosclerosis and hemorrhage. Magnetomotive optical coherence tomography (MMOCT) contrasts SPIO-platelets based on their nanoscale, magnetically-induced motion. We report improvements in MMOCT imaging contrast and sensitivity by optimizing the magnetic properties and SPIO loading of th...

  14. Multisensor coordinate measuring technology. Dimensional metrology using optics, tactile sensing and X-ray tomography

    International Nuclear Information System (INIS)

    This booklet gives a comprehensive and lucid introduction to the technical fundamentals of multisensor coordinate measuring technology as available at the time of writing (2013). Its emphasis is on optic, tactile and X-ray tomography sensors, but it also provides in-depth coverage of important aspects of measuring device technology and its applications as well as accuracy and economic efficiency.

  15. Experimental study of z resolution in acousto-optical coherence tomography using random phase jumps on ultrasound and light

    OpenAIRE

    Lesaffre, Max; Farahi, Salma; Ramaz, François; Gross, Michel

    2013-01-01

    Acousto-Optical Coherence Tomography (AOCT) is a variant of Acousto Optic Imaging (also called Ultrasound modulated Optical Tomography) that makes possible to get resolution along the ultrasound propagation axis $z$. We present here new AOCT experimental results, and we study how the $z$ resolution depends on time step between phase jumps $T_\\phi$, or on the correlation length $\\Delta z$. By working at low resolution, we perform a quantitative comparison of the $z$ measureme...

  16. Smart optical coherence tomography for ultra-deep imaging through highly scattering media

    CERN Document Server

    Badon, Amaury; Lerosey, Geoffroy; Boccara, Albert C; Fink, Mathias; Aubry, Alexandre

    2015-01-01

    Multiple scattering of waves in disordered media is a nightmare whether it be for detection or imaging purposes. The best approach so far to get rid of multiple scattering is optical coherence tomography. It basically combines confocal microscopy and coherence time-gating to discriminate ballistic photons from a predominant multiple scattering background. Nevertheless, the imaging depth range remains limited to 1 mm at best in human soft tissues. Here we propose a matrix approach of optical imaging to push back this fundamental limit. By combining a matrix discrimination of ballistic waves and iterative time-reversal, we show both theoretically and experimentally an extension of the imaging-depth limit by at least a factor two compared to optical coherence tomography. In particular, the reported experiment demonstrates imaging through a strongly scattering layer from which only one reflected photon over 1000 billion is ballistic. This approach opens a new route towards ultra-deep tissue imaging.

  17. A soft deformable tissue-equivalent phantom for diffuse optical tomography

    International Nuclear Information System (INIS)

    A recipe is presented for the manufacture of highly compressible phantoms for diffuse optical tomography. The recipe is based on polyvinyl alcohol (PVA) slime, a viscoelastic fluid which readily deforms under moderate pressure. Scattering particles and absorbing compounds can be added to provide a uniform material with stable and reproducible optical properties. A linear relationship between the concentration of scattering particles (either titanium dioxide or microspheres) and the transport scatter coefficient is demonstrated. Phantoms of an arbitrary size and shape may be produced by containing the slime within a thin latex shell, and a stability over a period of at least 3 months has been established. The deformable phantoms may be used to test and calibrate optical tomography systems designed for use on patients with irregular or variable geometries

  18. A soft deformable tissue-equivalent phantom for diffuse optical tomography

    Science.gov (United States)

    Hebden, Jeremy C.; Price, Ben D.; Gibson, Adam P.; Royle, Gary

    2006-11-01

    A recipe is presented for the manufacture of highly compressible phantoms for diffuse optical tomography. The recipe is based on polyvinyl alcohol (PVA) slime, a viscoelastic fluid which readily deforms under moderate pressure. Scattering particles and absorbing compounds can be added to provide a uniform material with stable and reproducible optical properties. A linear relationship between the concentration of scattering particles (either titanium dioxide or microspheres) and the transport scatter coefficient is demonstrated. Phantoms of an arbitrary size and shape may be produced by containing the slime within a thin latex shell, and a stability over a period of at least 3 months has been established. The deformable phantoms may be used to test and calibrate optical tomography systems designed for use on patients with irregular or variable geometries.

  19. Test target for characterizing 3D resolution of optical coherence tomography

    Science.gov (United States)

    Hu, Zhixiong; Hao, Bingtao; Liu, Wenli; Hong, Baoyu; Li, Jiao

    2014-12-01

    Optical coherence tomography (OCT) is a non-invasive 3D imaging technology which has been applied or investigated in many diagnostic fields including ophthalmology, dermatology, dentistry, cardiovasology, endoscopy, brain imaging and so on. Optical resolution is an important characteristic that can describe the quality and utility of an image acquiring system. We employ 3D printing technology to design and fabricate a test target for characterizing 3D resolution of optical coherence tomography. The test target which mimics USAF 1951 test chart was produced with photopolymer. By measuring the 3D test target, axial resolution as well as lateral resolution of a spectral domain OCT system was evaluated. For comparison, conventional microscope and surface profiler were employed to characterize the 3D test targets. The results demonstrate that the 3D resolution test targets have the potential of qualitatively and quantitatively validating the performance of OCT systems.

  20. Sagittal laser optical tomography for imaging of rheumatoid finger joints

    International Nuclear Information System (INIS)

    We present a novel optical tomographic imaging system that was designed to determine two-dimensional spatial distribution of optical properties in a sagittal plane through finger joints. The system incorporates a single laser diode and a single silicon photodetector into a scanning device that records spatially resolved light intensities as they are transmitted through a finger. These data are input to a model-based iterative image reconstruction (MOBIIR) scheme, which uses the equation of radiative transfer (ERT) as a forward model for light propagation through tissue. We have used this system to obtain tomographic images of six proximal interphalangeal finger joints from two patients with rheumatoid arthritis. The optical images were compared to clinical symptoms and ultrasound images

  1. Photons-based medical imaging - Radiology, X-ray tomography, gamma and positrons tomography, optical imaging; Imagerie medicale a base de photons - Radiologie, tomographie X, tomographie gamma et positons, imagerie optique

    Energy Technology Data Exchange (ETDEWEB)

    Fanet, H.; Dinten, J.M.; Moy, J.P.; Rinkel, J. [CEA Leti, Grenoble (France); Buvat, I. [IMNC - CNRS, Orsay (France); Da Silva, A. [Institut Fresnel, Marseille (France); Douek, P.; Peyrin, F. [INSA Lyon, Lyon Univ. (France); Frija, G. [Hopital Europeen George Pompidou, Paris (France); Trebossen, R. [CEA-Service hospitalier Frederic Joliot, Orsay (France)

    2010-07-01

    This book describes the different principles used in medical imaging. The detection aspects, the processing electronics and algorithms are detailed for the different techniques. This first tome analyses the photons-based techniques (X-rays, gamma rays and visible light). Content: 1 - physical background: radiation-matter interaction, consequences on detection and medical imaging; 2 - detectors for medical imaging; 3 - processing of numerical radiography images for quantization; 4 - X-ray tomography; 5 - positrons emission tomography: principles and applications; 6 - mono-photonic imaging; 7 - optical imaging; Index. (J.S.)

  2. Tomography

    International Nuclear Information System (INIS)

    Tomography is a non-invasive technique now being developed as an industrial tool. It will be most useful for studying complex geometries where other NDT techniques provide ambiguous information, and complex processes where the quantitative data obtained can be used to rigorously test our understanding of the process. An overview of the CRNL program is presented

  3. Spectral Domain Optical Coherence Tomography in Simple Retina Pigment Epithelium Hamartoma

    Directory of Open Access Journals (Sweden)

    Melis Palamar Onay

    2012-03-01

    Full Text Available To report the spectral-domain optical coherence tomographic findings in a case of a simple hamartoma of the retinal pigment epithelium. A 55-year-old female patient with simple hamartoma of the retinal pigment epithelium was evaluated with ultrasonography and spectraldomain optic coherence tomography. The patient was found to have a pitch-black lesion measuring one-half of the disk diameter, located at about 1 disk diameter temporal to the foveola. B-mode ultrasonogram revealed a 0.8-mm thick retinal lesion with high internal reflectivity which was consistent with simple hamartoma of the retinal pigment epithelium. Spectral-domain optical coherence tomography demonstrated an elevated lesion extending from the retinal layer toward the vitreous. The high resolution of spectral-domain optical coherence tomography allows detailed observation of the retinal pigment epithelium hamartomas and is useful in the differential diagnosis and management of pigmented fundus lesions. (Turk J Oph thal mol 2012; 42: 157-8

  4. Assessment of laser-induced acceleration effects in optical clearing of in vivo human skin by optical coherence tomography

    Science.gov (United States)

    Zhan, Zhigang; Wei, Huajiang; Jin, Ying

    2015-02-01

    Laser irradiation is considered to be a promising innovative technology which has been developed in an attempt to increase transdermal drug delivery. In this study, a near-infrared CW diode laser (785?nm) was applied to increase permeability of glycerol solutions in human skin in vivo and improve the optical clearing efficacy. Results show that for both 15%v/v and 30%v/v glycerol, the permeability coefficient increased significantly if the detected area of the skin tissue was treated with laser irradiation before optical clearing agents (OCAs) were applied. This study based on optical coherence tomography imaging technique and optical clearing effect finds laser irradiation a new approach for enhancing the penetration of OCAs and accelerating the rate of transdermal drug delivery.

  5. Optical design of an optical coherence tomography and multispectral fluorescence imaging endoscope to detect early stage ovarian cancer

    Science.gov (United States)

    Tate, Tyler; Keenan, Molly; Swan, Elizabeth; Black, John; Utzinger, Urs; Barton, Jennifer

    2014-12-01

    The five year survival rate for ovarian cancer is over 90% if early detection occurs, yet no effective early screening method exists. We have designed and are constructing a dual modality Optical Coherence Tomography (OCT) and Multispectral Fluorescence Imaging (MFI) endoscope to optically screen the Fallopian tube and ovary for early stage cancer. The endoscope reaches the ovary via the natural pathway of the vagina, cervix, uterus and Fallopian tube. In order to navigate the Fallopian tube the endoscope must have an outer diameter of 600 ?m, be highly flexible, steerable, tracking and nonperforating. The imaging systems consists of six optical subsystems, two from OCT and four from MFI. The optical subsystems have independent and interrelated design criteria. The endoscope will be tested on realistic tissue models and ex vivo tissue to prove feasibility of future human trials. Ultimately the project aims to provide women the first effective ovarian cancer screening technique.

  6. Reconstruction Method for Optical Tomography Based on the Linearized Bregman Iteration with Sparse Regularization.

    Science.gov (United States)

    Leng, Chengcai; Yu, Dongdong; Zhang, Shuang; An, Yu; Hu, Yifang

    2015-01-01

    Optical molecular imaging is a promising technique and has been widely used in physiology, and pathology at cellular and molecular levels, which includes different modalities such as bioluminescence tomography, fluorescence molecular tomography and Cerenkov luminescence tomography. The inverse problem is ill-posed for the above modalities, which cause a nonunique solution. In this paper, we propose an effective reconstruction method based on the linearized Bregman iterative algorithm with sparse regularization (LBSR) for reconstruction. Considering the sparsity characteristics of the reconstructed sources, the sparsity can be regarded as a kind of a priori information and sparse regularization is incorporated, which can accurately locate the position of the source. The linearized Bregman iteration method is exploited to minimize the sparse regularization problem so as to further achieve fast and accurate reconstruction results. Experimental results in a numerical simulation and in vivo mouse demonstrate the effectiveness and potential of the proposed method. PMID:26421055

  7. The diagnostic study of optical tomography for high-temperature flow fields in the open system

    Science.gov (United States)

    Chen, Yun-yun; Huang, Xiao-gu; Wen, Yan; Guo, Zhen-yan; Song, Yang

    2015-06-01

    In this paper, the application of moiré and emission tomography in diagnosing the high-temperature and illuminant flow field in the open system is studied, and two flames with different spatial size are chosen as typical objects. First of all, the moiré fringes and the corresponding measured two flames are obtained by integrating moiré and emission tomography. After that, the distribution and the brightness of the moiré fringes are compared for the two flame flow fields, as well as the distributions of the refractive index and the components. Then, the temperature distributions of the two flames are compared and analyzed. The results show that, when moiré and emission tomography are applied in diagnosing the high-temperature and illuminant flow field in the open system, the size, the structure and the species components of the measured flow fields have important effect on the final temperature results. Consequently, the specific problem should be specifically analyzed for the optical diagnosis of flow fields.

  8. Laser Tomography Adaptive Optics (LTAO): A performance study

    CERN Document Server

    Tatulli, E

    2013-01-01

    We present an analytical derivation of the on-axis performance of Adaptive Optics systems using a given number of guide stars of arbitrary altitude, distributed at arbitrary angular positions in the sky. The expressions of the residual error are given for cases of both continuous and discrete turbulent atmospheric profiles. Assuming Shack-Hartmann wavefront sensing with circular apertures, we demonstrate that the error is formally described by integrals of products of three Bessel functions. We compare the performance of Adaptive Optics correction when using natural, Sodium or Rayleigh laser guide stars. For small diameter class telescopes (~5m), we show that a few number of Rayleigh beacons can provide similar performance to that of a single Sodium laser, for a lower overall cost of the instrument. For bigger apertures, using Rayleigh stars may not be such a suitable alternative because of the too severe cone effect that drastically degrades the quality of the correction.

  9. Optical tomography: Development of a new medical imaging modality

    International Nuclear Information System (INIS)

    The demonstrated success of near-infrared spectroscopy as a diagnostic tool in medicine has encouraged physicists to pursue the development of an imaging technique based on the transmittance of optical wavelengths through tissue. Potential clinical applications include a means of detecting breast disease, and a cerebral imaging modality for mapping oxygenation and haemodynamics in the brain of newborn infants. Imaging of tissues with light is severely restricted by the overwhelming scatter which occurs when optical radiation propagates through tissue. However, recent innovations in technology and the development of new tomographic reconstruction procedures suggest that a clinically viable imaging modality is achievable. In this paper the recent progress in this field of research is reviewed, and the prospects for ultimate success are discussed

  10. Automatic Detection of Glaucoma Using Optical Coherence Tomography Image

    OpenAIRE

    Rengaraj Venkatesh; S.SHENBAGA DEVI; T.R. Ganesh Babu

    2012-01-01

    Glaucoma is an eye disorder in which the optic nerve suffers damage, leading to vision defect in the affected eye(s) and rolling to complete blindness if untreated. It is frequently associated with increased pressure in the fluid of the eye; aqueous humour. Glaucoma often goes undetected until significant damage to the subject’s visual field has occurred. As glaucoma progresses, neural tissues die, the nerve fiber layer thins and the cup-to-disk ratio increases. The conventional techniq...

  11. Optical tomography for biomedical applications by digital interference holography

    International Nuclear Information System (INIS)

    We present results of imaging experiments using digital interference holography (DIH). Calibration experiments using a resolution target demonstrate an improvement of signal-to-noise ratio (SNR) with increasing number of holograms consistent with theoretical prediction. Imaging experiments on retinal tissue reveal the topography of blood vessels as well as the optical thickness profile of the retinal layer. The SNR of tissue images is comparable to that of the resolution target, implying that the imaging system is operating close to theoretical optimum

  12. Nondestructive observation of teeth post core-space using optical coherence tomography: comparison with microcomputed tomography and live images

    Science.gov (United States)

    Minamino, Takuya; Mine, Atsushi; Matsumoto, Mariko; Sugawa, Yoshihiko; Kabetani, Tomoshige; Higashi, Mami; Kawaguchi, Asuka; Ohmi, Masato; Awazu, Kunio; Yatani, Hirofumi

    2015-10-01

    No previous reports have observed inside the root canal using both optical coherence tomography (OCT) and x-ray microcomputed tomography (?CT) for the same sample. The purpose of this study was to clarify both OCT and ?CT image properties from observations of the same root canal after resin core build-up treatment. As OCT allows real-time observation of samples, gap formation may be able to be shown in real time. A dual-cure, one-step, self-etch adhesive system bonding agent, and dual-cure resin composite core material were used in root canals in accordance with instructions from the manufacturer. The resulting OCT images were superior for identifying gap formation at the interface, while ?CT images were better to grasp the tooth form. Continuous tomographic images from real-time OCT observation allowed successful construction of a video of the resin core build-up procedure. After 10 to 12 s of light curing, a gap with a clear new signal occurred at the root-core material interface, proceeding from the coronal side (6 mm from the cemento-enamel junction) to the apical side of the root.

  13. Assessment of natural enamel lesions with optical coherence tomography in comparison with microfocus x-ray computed tomography.

    Science.gov (United States)

    Espigares, Jorge; Sadr, Alireza; Hamba, Hidenori; Shimada, Yasushi; Otsuki, Masayuki; Tagami, Junji; Sumi, Yasunori

    2015-01-01

    A technology to characterize early enamel lesions is needed in dentistry. Optical coherence tomography (OCT) is a noninvasive method that provides high-resolution cross-sectional images. The aim of this study is to compare OCT with microfocus x-ray computed tomography ([Formula: see text]) for assessment of natural enamel lesions in vitro. Ten human teeth with visible white spot-like changes on the enamel smooth surface and no cavitation (ICDAS code 2) were subjected to imaging by ?CT (SMX-100CT, Shimadzu) and 1300-nm swept-source OCT (Dental SS-OCT, Panasonic Health Care). In [Formula: see text], the lesions appeared as radiolucent dark areas, while in SS-OCT, they appeared as areas of increased signal intensity beneath the surface. An SS-OCT attenuation coefficient based on Beer-Lambert law could discriminate lesions from sound enamel. Lesion depth ranged from 175 to [Formula: see text] in SS-OCT. A correlation between [Formula: see text] and SS-OCT was found regarding lesion depth ([Formula: see text], [Formula: see text]) and also surface layer thickness ([Formula: see text], [Formula: see text]). The images obtained clinically in real time using the dental SS-OCT system are suitable for the assessment of natural subsurface lesions and their surface layer, providing comparable images to a laboratory high-resolution [Formula: see text] without the use of x-ray. PMID:26158079

  14. Nondestructive observation of teeth post core-space using optical coherence tomography: comparison with microcomputed tomography and live images.

    Science.gov (United States)

    Minamino, Takuya; Mine, Atsushi; Matsumoto, Mariko; Sugawa, Yoshihiko; Kabetani, Tomoshige; Higashi, Mami; Kawaguchi, Asuka; Ohmi, Masato; Awazu, Kunio; Yatani, Hirofumi

    2015-10-01

    No previous reports have observed inside the root canal using both optical coherence tomography (OCT) and x-ray microcomputed tomography (μCT) for the same sample. The purpose of this study was to clarify both OCT and μCT image properties from observations of the same root canal after resin core build-up treatment. As OCT allows real-time observation of samples, gap formation may be able to be shown in real time. A dual-cure, one-step, self-etch adhesive system bonding agent, and dual-cure resin composite core material were used in root canals in accordance with instructions from the manufacturer. The resulting OCT images were superior for identifying gap formation at the interface, while μCT images were better to grasp the tooth form. Continuous tomographic images from real-time OCT observation allowed successful construction of a video of the resin core build-up procedure. After 10 to 12 s of light curing, a gap with a clear new signal occurred at the root-core material interface, proceeding from the coronal side (6 mm from the cemento-enamel junction) to the apical side of the root. PMID:26440617

  15. Quantum Process Tomography of an Optically-Controlled Kerr Non-linearity.

    Science.gov (United States)

    Kupchak, Connor; Rind, Samuel; Jordaan, Bertus; Figueroa, Eden

    2015-01-01

    Any optical quantum information processing machine would be comprised of fully-characterized constituent devices for both single state manipulations and tasks involving the interaction between multiple quantum optical states. Ideally for the latter, would be an apparatus capable of deterministic optical phase shifts that operate on input quantum states with the action mediated solely by auxiliary signal fields. Here we present the complete experimental characterization of a system designed for optically controlled phase shifts acting on single-photon level probe coherent states. Our setup is based on a warm vapor of rubidium atoms under the conditions of electromagnetically induced transparency with its dispersion properties modified through the use of an optically triggered N-type Kerr non-linearity. We fully characterize the performance of our device by sending in a set of input probe states and measuring the corresponding output via time-domain homodyne tomography and subsequently performing the technique of coherent state quantum process tomography. This method provides us with the precise knowledge of how our optical phase shift will modify any arbitrary input quantum state engineered in the mode of the reconstruction. PMID:26585904

  16. Finite elements parameterization of optical tomography with the radiative transfer equation in frequency domain

    International Nuclear Information System (INIS)

    Optical tomography is a technique of probing semi-transparent media with the help of light sources. In this method, the spatial distribution of the optical properties inside the probed medium is reconstructed by minimizing a cost function based on the errors between the measurements and the predictions of a numerical model of light transport (also called forward/direct model) within the medium at the detectors locations. Optical tomography with finite elements methods involves generally continuous formulations where the optical properties are constant per mesh elements. This study proposes a numerical analysis in the parameterization of the finite elements space of the optical properties in order to improve the accuracy and the contrast of the reconstruction. Numerical tests with noised data using the same algorithm show that continuous finite elements spaces give better results than discontinuous ones by allowing a better transfer of the information between the whole computational nodes of the inversion. It is seen that the results are more accurate when the number of degrees of freedom of the finite element space of the optical properties (number of unknowns) is lowered. This shows that reducing the number of unknowns decreases the ill-posed nature of the inverse problem, thus it is a promising way of regularizing the inversion.

  17. Block matching 3D random noise filtering for absorption optical projection tomography

    Science.gov (United States)

    Fumene Feruglio, P.; Vinegoni, C.; Gros, J.; Sbarbati, A.; Weissleder, R.

    2010-09-01

    Absorption and emission optical projection tomography (OPT), alternatively referred to as optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT), are recently developed three-dimensional imaging techniques with value for developmental biology and ex vivo gene expression studies. The techniques' principles are similar to the ones used for x-ray computed tomography and are based on the approximation of negligible light scattering in optically cleared samples. The optical clearing is achieved by a chemical procedure which aims at substituting the cellular fluids within the sample with a cell membranes' index matching solution. Once cleared the sample presents very low scattering and is then illuminated with a light collimated beam whose intensity is captured in transillumination mode by a CCD camera. Different projection images of the sample are subsequently obtained over a 360° full rotation, and a standard backprojection algorithm can be used in a similar fashion as for x-ray tomography in order to obtain absorption maps. Because not all biological samples present significant absorption contrast, it is not always possible to obtain projections with a good signal-to-noise ratio, a condition necessary to achieve high-quality tomographic reconstructions. Such is the case for example, for early stage's embryos. In this work we demonstrate how, through the use of a random noise removal algorithm, the image quality of the reconstructions can be considerably improved even when the noise is strongly present in the acquired projections. Specifically, we implemented a block matching 3D (BM3D) filter applying it separately on each acquired transillumination projection before performing a complete three-dimensional tomographical reconstruction. To test the efficiency of the adopted filtering scheme, a phantom and a real biological sample were processed. In both cases, the BM3D filter led to a signal-to-noise ratio increment of over 30 dB on severe noise-affected reconstructions revealing original—noise-hidden—image details. These results show the utility of the BM3D approach for OPT under typical conditions of very low light absorption, suggesting its implementation as an efficient alternative to other filtering schemes such as for example the median filter.

  18. Block matching 3D random noise filtering for absorption optical projection tomography

    International Nuclear Information System (INIS)

    Absorption and emission optical projection tomography (OPT), alternatively referred to as optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT), are recently developed three-dimensional imaging techniques with value for developmental biology and ex vivo gene expression studies. The techniques' principles are similar to the ones used for x-ray computed tomography and are based on the approximation of negligible light scattering in optically cleared samples. The optical clearing is achieved by a chemical procedure which aims at substituting the cellular fluids within the sample with a cell membranes' index matching solution. Once cleared the sample presents very low scattering and is then illuminated with a light collimated beam whose intensity is captured in transillumination mode by a CCD camera. Different projection images of the sample are subsequently obtained over a 3600 full rotation, and a standard backprojection algorithm can be used in a similar fashion as for x-ray tomography in order to obtain absorption maps. Because not all biological samples present significant absorption contrast, it is not always possible to obtain projections with a good signal-to-noise ratio, a condition necessary to achieve high-quality tomographic reconstructions. Such is the case for example, for early stage's embryos. In this work we demonstrate how, through the use of a random noise removal algorithm, the image quality of the reconstructions can be considerably improved even when the noise is strongly present in the acquired projections. Specifically, we implemented a block matching 3D (BM3D) filter applying it separately on each acquired transillumination projection before performing a complete three-dimensional tomographical reconstruction. To test the efficiency of the adopted filtering scheme, a phantom and a real biological sample were processed. In both cases, the BM3D filter led to a signal-to-noise ratio increment of over 30 dB on severe noise-affected reconstructions revealing original-noise-hidden-image details. These results show the utility of the BM3D approach for OPT under typical conditions of very low light absorption, suggesting its implementation as an efficient alternative to other filtering schemes such as for example the median filter.

  19. Block matching 3D random noise filtering for absorption optical projection tomography

    Energy Technology Data Exchange (ETDEWEB)

    Fumene Feruglio, P; Vinegoni, C; Weissleder, R [Center for Systems Biology, Massachusetts General Hospital, Harvard Medical School, 185 Cambridge Street, Boston, MA 02114 (United States); Gros, J [Department of Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, Boston MA 02115 (United States); Sbarbati, A, E-mail: cvinegoni@mgh.harvard.ed [Department of Morphological and Biomedical Sciences, University of Verona, Strada Le Grazie 8, 37134 Verona (Italy)

    2010-09-21

    Absorption and emission optical projection tomography (OPT), alternatively referred to as optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT), are recently developed three-dimensional imaging techniques with value for developmental biology and ex vivo gene expression studies. The techniques' principles are similar to the ones used for x-ray computed tomography and are based on the approximation of negligible light scattering in optically cleared samples. The optical clearing is achieved by a chemical procedure which aims at substituting the cellular fluids within the sample with a cell membranes' index matching solution. Once cleared the sample presents very low scattering and is then illuminated with a light collimated beam whose intensity is captured in transillumination mode by a CCD camera. Different projection images of the sample are subsequently obtained over a 360{sup 0} full rotation, and a standard backprojection algorithm can be used in a similar fashion as for x-ray tomography in order to obtain absorption maps. Because not all biological samples present significant absorption contrast, it is not always possible to obtain projections with a good signal-to-noise ratio, a condition necessary to achieve high-quality tomographic reconstructions. Such is the case for example, for early stage's embryos. In this work we demonstrate how, through the use of a random noise removal algorithm, the image quality of the reconstructions can be considerably improved even when the noise is strongly present in the acquired projections. Specifically, we implemented a block matching 3D (BM3D) filter applying it separately on each acquired transillumination projection before performing a complete three-dimensional tomographical reconstruction. To test the efficiency of the adopted filtering scheme, a phantom and a real biological sample were processed. In both cases, the BM3D filter led to a signal-to-noise ratio increment of over 30 dB on severe noise-affected reconstructions revealing original-noise-hidden-image details. These results show the utility of the BM3D approach for OPT under typical conditions of very low light absorption, suggesting its implementation as an efficient alternative to other filtering schemes such as for example the median filter.

  20. Breast tumor hypoxia mapping using ultrasound guided diffuse optical tomography

    Science.gov (United States)

    Biswal, Nrusingh C.; Xu, Yan; Zhu, Quing

    2011-02-01

    Tumor hypoxia is an important indicator of tumor metabolism and tumor response to various forms of therapy. Currently, no imaging modality exists that can directly map tumor hypoxia non-invasively. We present an ultrasound guided diffuse optical imaging technique for precisely measuring the tumor oxygenation. The approach employs ultrasound structural information as a-prior knowledge for diffuse optical imaging. Hypoxia mapping is achieved using endogenous chromophores such as oxy- and deoxy- hemoglobin in the tissue. Because oxy- and deoxy- hemoglobin respond differently at different wavelengths, four different laser diodes of wavelengths 740 nm, 780 nm, 808 nm and 830 nm were used for mapping tumor hypoxia by diffuse optical imaging. Hypoxia model experiments were performed using phantoms at different oxygenation conditions (Hemoglobin oxygen saturation: 14%-92%) representing the hemoglobin oxygenation range in tissue. Targets of different sizes mimicking different development stages of breast tumors, 1.0 cm to 2.5 cm diameter in 0.5 cm steps, were tested to validate the oxygen saturation measurement accuracy with target size. The absolute deviations between the estimated hemoglobin oxygen saturations from absorption maps and oxygen measurements obtained using a pO2 electrode were less than 8% over the measured range of oxygen saturations (14% - 92%). An inhomogeneous cocentric blood phantom of deoxygenated center core and oxygenated outer shell was imaged and deoxy- and oxy- hemoglobin maps revealed corresponding distributions which correlate with inhomogeneous deoxy- and oxy- distributions frequently seen in advanced breast cancers located in the depth range of 1-3 cm.

  1. Sound field reconstruction using acousto-optic tomography

    DEFF Research Database (Denmark)

    Torras Rosell, Antoni; Barrera Figueroa, Salvador; Jacobsen, Finn

    2012-01-01

    When sound propagates through a medium, it results in pressure fluctuations that change the instantaneous density of the medium. Under such circumstances, the refractive index that characterizes the propagation of light is not constant, but influenced by the acoustic field. This kind of interaction...... governing the acousto-optic effect in air, and demonstrates that it can be measured with a laser Doppler vibrometer in the audible frequency range. The tomographic reconstruction is tested by means of computer simulations and measurements. The main features observed in the simulations are also recognized in...

  2. Multiple Fan-Beam Optical Tomography: Modelling Techniques

    Directory of Open Access Journals (Sweden)

    Pang Jon Fea

    2009-10-01

    Full Text Available This paper explains in detail the solution to the forward and inverse problem faced in this research. In the forward problem section, the projection geometry and the sensor modelling are discussed. The dimensions, distributions and arrangements of the optical fibre sensors are determined based on the real hardware constructed and these are explained in the projection geometry section. The general idea in sensor modelling is to simulate an artificial environment, but with similar system properties, to predict the actual sensor values for various flow models in the hardware system. The sensitivity maps produced from the solution of the forward problems are important in reconstructing the tomographic image.

  3. Tomography

    International Nuclear Information System (INIS)

    Tomography is a non-intrusive imaging technique being developed at CRNL as an industrial tool for generating quantitative cross-sectional density maps of objects. Of most interest is tomography's ability to: distinguish features within complex geometries where other NDT techniques fail because of the complexity of the geometry; detect/locate small density changes/defects within objects, e.g. void fraction measurements within thick-walled vessels, shrink cavities in castings, etc.; provide quantitative data that can be used in analyses, e.g. of complex processes, or fracture mechanics; and provide objective quantitative data that can be used for (computer-based) quality assurance decisions, thereby reducing and in some cases eliminating the present subjectivity often encountered in NDT. The CRNL program is reviewed and examples are presented to illustrate the potential and the limitations of the technology

  4. Theoretical limit of spatial resolution in diffuse optical tomography using a perturbation model

    Energy Technology Data Exchange (ETDEWEB)

    Konovalov, A B; Vlasov, V V [E.I. Zababakhin All-Russian Scientific-Research Institute of Technical Physics, Russian Federal Nuclear Centre, Snezhinsk, Chelyabinsk region (Russian Federation)

    2014-03-28

    We have assessed the limit of spatial resolution of timedomain diffuse optical tomography (DOT) based on a perturbation reconstruction model. From the viewpoint of the structure reconstruction accuracy, three different approaches to solving the inverse DOT problem are compared. The first approach involves reconstruction of diffuse tomograms from straight lines, the second – from average curvilinear trajectories of photons and the third – from total banana-shaped distributions of photon trajectories. In order to obtain estimates of resolution, we have derived analytical expressions for the point spread function and modulation transfer function, as well as have performed a numerical experiment on reconstruction of rectangular scattering objects with circular absorbing inhomogeneities. It is shown that in passing from reconstruction from straight lines to reconstruction using distributions of photon trajectories we can improve resolution by almost an order of magnitude and exceed the accuracy of reconstruction of multi-step algorithms used in DOT. (optical tomography)

  5. Optical coherence tomography and pathological myopia: an update of the literature.

    Science.gov (United States)

    Cicinelli, Maria Vittoria; Pierro, Luisa; Gagliardi, Marco; Bandello, Francesco

    2015-12-01

    The purpose of this paper is to give an updated review of the last clinical entities in pathological myopia proposed by means of new generation optical coherence tomography (OCT), including enhanced depth imaging (EDI-OCT) and swept source OCT (SS-OCT). PubMed and Google engine search were carried out using the terms "pathological myopia" associated with "coherence tomography," "enhanced depth imaging," and "swept source OCT." Latest publications up to Jan 2015 about myopia-related complications, including open-angle chronic glaucoma, peripapillary retinal changes, acquired macular diseases, and choroidal neovascularization, have been reviewed. New OCT technologies have led to a greater insight in pathophysiology of high-grade myopia. However, further investigation is needed in order to prevent irreversible visual loss and optic nerve damage. PMID:26265324

  6. Spectral Doppler optical coherence tomography imaging of localized ischemic stroke in a mouse model

    Science.gov (United States)

    Yu, Lingfeng; Nguyen, Elaine; Liu, Gangjun; Choi, Bernard; Chen, Zhongping

    2010-11-01

    We report the use of spectral Doppler optical coherence tomography imaging (SDOCTI) for quantitative evaluation of dynamic blood circulation before and after a localized ischemic stroke in a mouse model. Rose Bengal photodynamic therapy (PDT) is used as a noninvasive means for inducing localized ischemia in cortical microvasculature of the mouse. Fast, repeated Doppler optical coherence tomography scans across vessels of interest are performed to record flow dynamic information with high temporal resolution. Doppler-angle-independent flow indices are used to quantify vascular conditions before and after the induced ischemia by the photocoagulation of PDT. The higher (or lower) flow resistive indices are associated with higher (or lower) resistance states that are confirmed by laser speckle flow index maps (of laser speckle imaging). Our in vivo experiments shows that SDOCTI can provide complementary quantified flow information that is an alternative to blood volume measurement, and can be used as a means for cortical microvasculature imaging well suited for small animal studies.

  7. Flow rate estimation by optical coherence tomography using contrast dilution approach

    Science.gov (United States)

    Štohanzlová, Petra; Kolá?, Radim

    2015-07-01

    This paper describes experiments and methodology for flow rate estimation using optical coherence tomography and dilution method in single fiber setup. The single fiber is created from custom made glass capillary and polypropylene hollow fiber. As a data source, measurements on single fiber phantom with continuous flow of carrier medium and bolus of Intralipid solution as a contrast agent were used using Thorlabs OCT OCS1300SS. The measured data were processed by methods of image processing, in order to precisely align the individual images in the sequence and extract dilution curves from the area inside the fiber. An experiment proved that optical coherence tomography can be used for flow rate estimation by the dilution method with precision around 7%.

  8. Quantitative analysis of the Stratus optical coherence tomography fast macular thickness map reports

    Directory of Open Access Journals (Sweden)

    Domalpally Amitha

    2010-01-01

    Full Text Available The cross sectional optical coherence tomography images have an important role in evaluating retinal diseases. The reports generated by the Stratus fast macular thickness scan protocol are useful for both clinical and research purposes. The centerpoint thickness is an important outcome measure for many therapeutic trials related to macular disease. The data is susceptible to artifacts such as decentration and boundary line errors and could be potentially erroneous. An understanding of how the data is generated is essential before utilizing the data. This article describes the interpretation of the fast macular thickness map report, assessment of the quality of an optical coherence tomography image and identification of the artifacts that could influence the numeric data.

  9. New variational image decomposition model for simultaneously denoising and segmenting optical coherence tomography images

    Science.gov (United States)

    Duan, Jinming; Tench, Christopher; Gottlob, Irene; Proudlock, Frank; Bai, Li

    2015-11-01

    Optical coherence tomography (OCT) imaging plays an important role in clinical diagnosis and monitoring of diseases of the human retina. Automated analysis of optical coherence tomography images is a challenging task as the images are inherently noisy. In this paper, a novel variational image decomposition model is proposed to decompose an OCT image into three components: the first component is the original image but with the noise completely removed; the second contains the set of edges representing the retinal layer boundaries present in the image; and the third is an image of noise, or in image decomposition terms, the texture, or oscillatory patterns of the original image. In addition, a fast Fourier transform based split Bregman algorithm is developed to improve computational efficiency of solving the proposed model. Extensive experiments are conducted on both synthesised and real OCT images to demonstrate that the proposed model outperforms the state-of-the-art speckle noise reduction methods and leads to accurate retinal layer segmentation.

  10. Automatic Detection of Glaucoma Using Optical Coherence Tomography Image

    Directory of Open Access Journals (Sweden)

    Rengaraj Venkatesh

    2012-01-01

    Full Text Available Glaucoma is an eye disorder in which the optic nerve suffers damage, leading to vision defect in the affected eye(s and rolling to complete blindness if untreated. It is frequently associated with increased pressure in the fluid of the eye; aqueous humour. Glaucoma often goes undetected until significant damage to the subject’s visual field has occurred. As glaucoma progresses, neural tissues die, the nerve fiber layer thins and the cup-to-disk ratio increases. The conventional techniques typically used for this measurement are unreliable and creates intricacies while measuring considerably small changes in the nerve head geometry. In this study, an algorithm is proposed that facilitates segmentation of the retinal-nerve head vitreal boundary, choroid-nerve head boundary identification and determination of the extent of the optic cup and disk. This algorithm is assessed and evaluated with many samples of OCT images from both normal and pathological eyes. Subsequently, the results are validated with the available documents from expert ophthalmologist reporting the correlation coefficient for cup to disk ratio.

  11. Evaluation of the macular architecture of patients operated on from macula-off rhegmatogenous retinal detachment using optical coherence tomography

    International Nuclear Information System (INIS)

    With the support of optical coherence tomography, to evaluate the macular condition of the patients operated on from rhegmatogenous retinal detachment, with detached macula, who underwent buckling surgery and pars plana vitrectomy

  12. Swept Source Optical Coherence Tomography based Smart Handheld Vitreoretinal Microsurgical Tool for Tremor Suppression

    OpenAIRE

    Song, Cheol; Gehlbach, Peter L.; Kang, Jin U

    2012-01-01

    Microsurgeons require the ability to make precise and stable maneuvers in order to achieve surgical objectives and to minimize surgical risks during freehand microsurgical procedures. This work presents a novel common path swept source optical coherence tomography based smart surgical tool that suppresses hand tremor. It allows enhanced tool tip stabilization, more accurate targeting and may lower surgical risk. Here the one dimensional motion tremor of a surgeon’s hand is assessed by the sur...

  13. Optical coherence tomography for the identification of musculoskeletal structures of the spine: a pilot study

    OpenAIRE

    Beaudette, Kathy; Strupler, Mathias; Benboujja, Fouzi; Parent, Stefan; Aubin, Carl-Eric; Boudoux, Caroline

    2012-01-01

    Adolescent idiopathic scoliosis (AIS) is a complex three-dimensional deformity of the spine requiring in severe cases invasive surgery. Here, we explore the potential of optical coherence tomography (OCT) as a guiding tool for novel fusionless minimally invasive spinal surgeries on an ex vivo porcine model. We show that OCT, despite its limited penetration depth, may be used to precisely locate structures such as growth plate, bone and intervertebral disk using relative attenuation coefficien...

  14. Automated identification of basal cell carcinoma by polarization-sensitive optical coherence tomography

    OpenAIRE

    Duan, Lian; Marvdashti, Tahereh; Lee, Alex; Tang, Jean Y; Ellerbee, Audrey K.

    2014-01-01

    We report an automated classifier to detect the presence of basal cell carcinoma in images of mouse skin tissue samples acquired by polarization-sensitive optical coherence tomography (PS-OCT). The sensitivity and specificity of the classifier based on combined information of the scattering intensity and birefringence properties of the samples are significantly higher than when intensity or birefringence information are used alone. The combined information offers a sensitivity of 94.4% and sp...

  15. Autocorrelation optical coherence tomography for mapping transverse particle-flow velocity

    OpenAIRE

    Wang, Yi; Wang, Ruikang

    2010-01-01

    We present an autocorrelation method to quantitatively map transverse particle-flow velocity with a Fourier domain optical coherence tomography system. This method is derived from the intensity fluctuation of the backscattered light modulated by flowing particles. When passing through the probe beam, moving particles encode a transit time into the backscattered light. The slope of the normalized autocorrelation function of the backscattered light is proportional to the transverse velocity. Th...

  16. Optical tomography with structured illumination using the three-dimensional FN method

    OpenAIRE

    Machida, Manabu

    2015-01-01

    One way of formulating optical tomography is to use the Born series, which is given by the Green's function for the homogeneous medium. The three-dimensional FN method is a numerical method of obtaining the specific intensity of the radiative transport equation expressed as a superposition of three-dimensional singular eigenfunctions. In this paper, we compute the Green's function for the radiative transport equation using the three-dimensional FN method without making diffu...

  17. Blunt ocular trauma at the posterior pole in optical coherence tomography and fluorescein angiography

    International Nuclear Information System (INIS)

    Blunt ocular trauma at the posterior pole may involve a variety of retinal structures. We examined the most frequent retinal trauma (choroidal folds, commotion retinae, choroidal rupture, valsalva retinopathy, PPE-tears, Purtscher's Retinopathy etc.) by optical coherence tomography (OCT). The damaged pre-, intra- or subretinal structures were clearly visible. The OCT is during acute and chronic phases of different traumatic events an important diagnostic tool. (author)

  18. Macular thickness measurements in healthy Norwegian volunteers: an optical coherence tomography study

    OpenAIRE

    Sand Trond; Wexler Alexandra; Elsås Tor B

    2010-01-01

    Abstract Background Ethnic, intersubject, interoperator and intermachine differences in measured macular thickness seem to exist. Our purpose was to collect normative macular thickness data in Norwegians and to evaluate the association between macular thickness and age, gender, parity, and contraception status. Methods Retinal thickness was measured by Stratus Optical Coherence Tomography in healthy subjects. Mean macular thickness (MMT) was analyzed by repeated measures ANOVA with three depe...

  19. Visualization of peripheral pulmonary artery red thrombi utilizing optical coherence tomography

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) is a new imaging technique capable of obtaining high-resolution intravascular images and has been used in interventional cardiology. However, an application of OCT in pulmonary arteries had seldom been documented. In this case, OCT imaging is performed in peripheral pulmonary arteries and shows mural red thrombi. Subsequently, the red thrombi are aspirated and confirmed by a histological examination. These findings suggest that OCT may be a useful tool to depict peripheral pulmonary artery thrombi.

  20. High-resolution imaging diagnosis of human fetal membrane by three-dimensional optical coherence tomography

    OpenAIRE

    Ren, Hugang; Avila, Cecilia; Kaplan, Cynthia; Pan, Yingtian

    2011-01-01

    Microscopic chorionic pseudocyst (MCP) arising in the chorion leave of the human fetal membrane (FM) is a clinical precursor for preeclampsia which may progress to fatal medical conditions (e.g., abortion) if left untreated. To examine the utility of three-dimensional (3D) optical coherence tomography (OCT) for noninvasive delineation of the morphology of human fetal membranes and early clinical detection of MCP, 60 human FM specimens were acquired from 10 different subjects undergoing term c...

  1. Use of Optical Coherence Tomography to Evaluate Visual Acuity and Visual Field Changes in Dengue Fever

    OpenAIRE

    Rhee, Taek Kwan; Han, Jung Il

    2014-01-01

    Dengue fever is a viral disease that is transmitted by mosquitoes and affects humans. In rare cases, dengue fever can cause visual impairment, which usually occurs within 1 month after contracting dengue fever and ranges from mild blurring of vision to severe blindness. Visual impairment due to dengue fever can be detected through angiography, retinography, optical coherence tomography (OCT) imaging, electroretinography, event electroencephalography (visually evoked potentials), and visual fi...

  2. Objective assessment of symptomatic vitreous floaters using optical coherence tomography: a case report

    OpenAIRE

    Kennelly, Kevin Patrick; Morgan, James Plunkett; Keegan, David Jude; Connell, Paul Patrick

    2015-01-01

    Background Vitrectomy for symptomatic vitreous floaters carries significant risks. Justification of surgery is difficult, particularly in healthy eyes with normal visual acuity and without a posterior vitreous detachment. This is the first reported case of optical coherence tomography being utilized to objectively assess the impact of a vitreous opacity on the macula. Case presentation A 37-year-old Caucasian female complained of the sudden onset of a ring-like floater in the central visual f...

  3. Neoatherosclerosis causing edge in-stent restenosis: optical coherence tomography findings.

    Science.gov (United States)

    Alfonso, F; Restrepo, J; Cuesta, J; Bastante, T; Rivero, F; Benedicto, A

    2015-05-01

    A patient presenting with 'edge' in-stent restenosis 12 years after the implantation of a bare-metal stent in the mid-left anterior descending coronary artery is described. Optical coherence tomography disclosed the presence of ruptured neoatherosclerosis at the stent edge. The value of this imaging technique to unravel this unique underlying anatomic substrate is discussed. The therapy of choice for patients presenting with edge in-stent restenosis (ISR) is reviewed. PMID:25911014

  4. Clinical use of Optical Coherence Tomography to identify angiographic silent stent thrombosis

    DEFF Research Database (Denmark)

    Steigen, Sonja E.; Holm, Niels Ramsing; Butt, Noreen; Maeng, Michael; Otsuka, Fumiyuki; Virmani, Renu; Ladich, Elena; Steigen, Terje K.

    2014-01-01

    Abstract Objectives: Patients previously treated with coronary stents may suffer an acute coronary syndrome (ACS) without any evidence of thrombus formation on coronary angiography (CAG). This may be due to partial, non-occlusive stent thrombosis with microembolization. In this paper we illustrate possible mechanisms both with Optical coherence tomography (OCT) and histology. Design: We present two cases with ACS from very late stent thrombosis, both previously treated with first generation drug...

  5. Visualization of peripheral pulmonary artery red thrombi utilizing optical coherence tomography

    Energy Technology Data Exchange (ETDEWEB)

    Hong, Cheng; Wang, Wei; Zhong, Nan Shan; Zeng, Guang Qiao; Zhang, Nuo Fu [The First Affiliated Hospital of Guangzhou Medical College, Guangzhou (China)

    2013-10-15

    Optical coherence tomography (OCT) is a new imaging technique capable of obtaining high-resolution intravascular images and has been used in interventional cardiology. However, an application of OCT in pulmonary arteries had seldom been documented. In this case, OCT imaging is performed in peripheral pulmonary arteries and shows mural red thrombi. Subsequently, the red thrombi are aspirated and confirmed by a histological examination. These findings suggest that OCT may be a useful tool to depict peripheral pulmonary artery thrombi.

  6. Optical coherence tomography fast versus regular macular thickness mapping in diabetic retinopathy

    OpenAIRE

    Ceklic, Lala; Maar, Noemi; Neubauer, Aljoscha S

    2008-01-01

    Objective: The purpose of the study was to investigate if absolute values and reproducibility of thickness maps obtained from 2 optical coherence tomography (OCT) scanning protocols, regular high-resolution and fast low-density mode, differ in patients with diabetic macular edema. Methods: A total of 26 consecutive patients undergoing fluorescein angiography and Stratus OCT scanning for the evaluation of diabetic macular edema at the Departments of Ophthalmology in Munich and Vienna were incl...

  7. Feasibility and methodology of optical coherence tomography imaging of human intracranial aneurysms: ex vivo pilot study

    Science.gov (United States)

    Vuong, Barry; Sun, Cuiru; Khiel, Tim-Rasmus; Gardecki, Joseph A.; Standish, Beau A.; da Costa, Leodante; de Morais, Josaphat; Tearney, Guillermo J.; Yang, Victor X. D.

    2012-02-01

    Rupture of intracranial aneurysm is a common cause of subarachnoid hemorrhage. An aneurysm may undergo microscopic morphological changes or remodeling of the vessel wall prior to rupture, which could potentially be imaged. In this study we present methods of tissue sample preparation of intracranial aneurysms and correlation between optical coherence tomography imaging and routine histology. OCT has a potential future in the assessment of microscopic features of aneurysms, which may correlate to the risk of rupture.

  8. Rapid evaluation of fresh ex vivo kidney tissue with full-field optical coherence tomography

    OpenAIRE

    Manu Jain; Robinson, Brian D; Bekheit Salamoon; Olivier Thouvenin; Claude Boccara; Sushmita Mukherjee

    2015-01-01

    Background: Full-field optical coherence tomography (FFOCT) is a real-time imaging technique that rapidly generates images reminiscent of histology without any tissue processing, warranting its exploration for evaluation of ex vivo kidney tissue. Methods: Fresh tissue sections from tumor and adjacent nonneoplastic kidney (n = 25 nephrectomy specimens; clear cell renal cell carcinoma (CCRCC) = 12, papillary RCC (PRCC) = 4, chromophobe RCC (ChRCC) = 4, papillary urothelial carcinoma (PUC) = 1, ...

  9. Analysis of the Retinal Nerve Fiber Layer in Retinitis Pigmentosa Using Optic Coherence Tomography

    OpenAIRE

    Medine Asl? Y?ld?r?m; Burak Erden; Mehmet Tetiko?lu; Özlem Kuru; Mustafa Elçio?lu

    2015-01-01

    Aim. To evaluate the peripapillary retinal nerve fiber layer (RNFL) changes in retinitis pigmentosa (RP) patients using spectral domain optic coherence tomography (Sd-OCT). Methods. We retrospectively examined medical records of forty-four eyes of twenty-two RP patients. The results were also compared with those of previously reported forty-four eyes of twenty-two normal subjects (controls). Records of average and four quadrants peripapillary RNFL thickness measurements using Sd-OCT were asse...

  10. Non-invasive Imaging of Retinal Degeneration in Small Animals Using Fourier Domain Optical Coherence Tomography

    OpenAIRE

    Xu, Jing

    2009-01-01

    A prototype spectrometer based on Fourier Domain Optical Coherence Tomography (FD OCT) system was used as a non-invasive depth resolved medical imaging tool for diagnostic visualization of the retinal structures in vivo. This thesis investigated so-called Spectral Domain (SD) OCT to detect and monitor pathological signs of retinal degeneration in small animals such as mice, rats and Xenopus laevis larvae. Non-invasive SD OCT imaging was validated against invasive retinal cross sectional image...

  11. Use of Split Bregman denoising for iterative reconstruction in fluorescence diffuse optical tomography

    OpenAIRE

    2013-01-01

    Fluorescence diffuse optical tomography (fDOT) is a noninvasive imaging technique that makes it possible to quantify the spatial distribution of fluorescent tracers in small animals. fDOT image reconstruction is commonly performed by means of iterative methods such as the algebraic reconstruction technique (ART). The useful results yielded by more advanced l1-regularized techniques for signal recovery and image reconstruction, together with the recent publication of Split Bregman (SB) procedu...

  12. Precise measurement of volume of eccrine sweat gland in mental sweating by optical coherence tomography

    Science.gov (United States)

    Sugawa, Yoshihiko; Fukuda, Akihiro; Ohmi, Masato

    2015-04-01

    We have demonstrated dynamic analysis of the physiological function of eccrine sweat glands underneath skin surface by optical coherence tomography (OCT). In this paper, we propose a method for extraction of the specific eccrine sweat gland by means of the connected component extraction process and the adaptive threshold method, where the en face OCT images are constructed by the swept-source OCT. In the experiment, we demonstrate precise measurement of the volume of the sweat gland in response to the external stimulus.

  13. Compressive Optical Deflectometric Tomography: A Constrained Total-Variation Minimization Approach

    OpenAIRE

    Gonzalez, Adriana; Jacques, Laurent; De Vleeschouwer, Christophe; Antoine, Philippe (ed.)

    2012-01-01

    Optical Deflectometric Tomography (ODT) provides an accurate characterization of transparent materials whose complex surfaces present a real challenge for manufacture and control. In ODT, the refractive index map (RIM) of a transparent object is reconstructed by measuring light deflection under multiple orientations. We show that this imaging modality can be made "compressive", i.e., a correct RIM reconstruction is achievable with far less observations than required by tradi...

  14. Compressive sensing with dispersion compensation on non-linear wavenumber sampled spectral domain optical coherence tomography

    OpenAIRE

    Xu, Daguang; Yong HUANG; Kang, Jin U

    2013-01-01

    We propose a novel compressive sensing (CS) method on spectral domain optical coherence tomography (SDOCT). By replacing the widely used uniform discrete Fourier transform (UDFT) matrix with a new sensing matrix which is a modification of the non-uniform discrete Fourier transform (NUDFT) matrix, it is shown that undersampled non-linear wavenumber spectral data can be used directly in the CS reconstruction. Thus k-space grid filling and k-linear mask calibration which were proposed to obtain ...

  15. Brain specificity of diffuse optical imaging: improvements from superficial signal regression and tomography

    OpenAIRE

    AndrewJ Berger; JosephPCulver

    2010-01-01

    Functional near infrared spectroscopy (fNIRS) is a portable monitor of cerebral hemodynamics with wide clinical potential. However, in fNIRS, the vascular signal from the brain is often obscured by vascular signals present in the scalp and skull. In this paper, we evaluate two methods for improving in vivo data from adult human subjects through the use of high-density diffuse optical tomography (DOT). First, we test whether we can extend superficial regression methods (which utilize the multi...

  16. Compensation of optode sensitivity and position errors in diffuse optical tomography using the approximation error approach

    OpenAIRE

    Mozumder, M.; Tarvainen, T.; Arridge, S.R.; Kaipio, J.; V. Kolehmainen

    2013-01-01

    Diffuse optical tomography is highly sensitive to measurement and modeling errors. Errors in the source and detector coupling and positions can cause significant artifacts in the reconstructed images. Recently the approximation error theory has been proposed to handle modeling errors. In this article, we investigate the feasibility of the approximation error approach to compensate for modeling errors due to inaccurately known optode locations and coupling coefficients. The approach is evaluat...

  17. Brain Specificity of Diffuse Optical Imaging: Improvements from Superficial Signal Regression and Tomography

    OpenAIRE

    Gregg, Nicholas M.; White, Brian R.; Zeff, Benjamin W.; Berger, Andrew J.; Culver, Joseph P.

    2010-01-01

    Functional near infrared spectroscopy (fNIRS) is a portable monitor of cerebral hemodynamics with wide clinical potential. However, in fNIRS, the vascular signal from the brain is often obscured by vascular signals present in the scalp and skull. In this paper, we evaluate two methods for improving in vivo data from adult human subjects through the use of high-density diffuse optical tomography (DOT). First, we test whether we can extend superficial regression methods (which utilize the multi...

  18. High-resolution optical coherence tomography visualization of LASIK flap displacement

    OpenAIRE

    Salaroli, Camila Haydée Rosas; Li, Yan; Huang, David

    2009-01-01

    Uneventful myopic laser in situ keratomileusis (LASIK) was performed in both eyes of a 33-year-old woman. Two weeks after LASIK, examination of the left eye revealed flap striae radiating inferonasally from the superior hinge. The flap was relifted and repositioned to remove the irregular astigmatism and reduce the striae. Before the flap was relifted, Fourier-domain optical coherence tomography (FD-OCT) showed the gap at the temporal flap, which had not been detected by biomicroscopy. After ...

  19. Towards using spectral domain optical coherence tomography for dental wear monitoring

    Science.gov (United States)

    M?rc?uteanu, Corina; Bradu, Adrian; Sinescu, Cosmin; Topal?, Florin I.; Negrutiu, Meda Lavinia; Podoleanu, Adrian G.

    2014-03-01

    In this paper we demonstrate that fast spectral domain optical coherence tomography imaging systems have the potential to monitor the evolution of pathological dental wear. On 10 caries free teeth, four levels of artificially defects similar to those observed in the clinic were created. After every level of induced defect, OCT scanning was performed. B-scans were acquired and 3D reconstructions were generated.

  20. Correlation between intraretinal changes in diabetic macular oedema seen in fluorescein angiography and optical coherence tomography

    DEFF Research Database (Denmark)

    Soliman, W.; Sander, B.; Hasler, P.W.; Larsen, Michael

    2008-01-01

    Purpose: To study the relationship between intraretinal optical coherence tomography (OCT) and fluorescein angiography (FA) findings in eyes with diabetic macular oedema (DMO). Methods: We carried out a retrospective observational case series. Thirty eyes with previously untreated DMO underwent FA and OCT. The same ETDRS template was overlaid on the FA images in order to compare OCT and FA. Transfoveal linear high-resolution OCT scans (at the 0- and 90-degree meridians) and FA pictures were comp...

  1. Development of optical coherence tomography for monitoring the glaucoma laser surgery

    OpenAIRE

    Bayleyegn, Masreshaw-demelash

    2012-01-01

    The ability of optical coherence tomography (OCT) to deliver tomographic images of biological tissues in vivo non-invasively and in real-time has been a growing interest in many biomedical applications, mainly in ophthalmology for imaging the retina and the anterior segment of the eye. However, developing high-resolution OCT for imaging strongly scattering biological tissues like sclera and edematous cornea has still been the main challenge. In this PhD work, an ultrahigh-resolution (< 4 µm) ...

  2. Intraoperative Optical Coherence Tomography Using the RESCAN 700: Preliminary Results in Collagen Crosslinking

    OpenAIRE

    Natasha Pahuja; Rohit Shetty; Chaitra Jayadev; Rudy Nuijts; Bharath Hedge; Vishal Arora

    2015-01-01

    Purpose. To compare the penetration of riboflavin using a microscope-integrated real time spectral domain optical coherence tomography (ZEISS OPMI LUMERA 700 and ZEISS RESCAN 700) in keratoconus patients undergoing accelerated collagen crosslinking (ACXL) between epithelium on (epi-on) and epithelium off (epi-off). Methods. Intraoperative images were obtained during each of the procedures. Seven keratoconus patients underwent epi-on ACXL and four underwent epi-off ACXL. A software tool was de...

  3. Acousto-optical coherence tomography using random phase jumps on ultrasound and light

    OpenAIRE

    Lesaffre, Max; Farahi, S.; Gross, Michel; Delaye, Philippe; Boccara, Claude; Ramaz, François

    2009-01-01

    Imaging objects embedded within highly scattering media by coupling light and ultrasounds (US) is a challenging approach. In deed, US enable direct access to the spatial localization, though resolution can be poor along their axis (cm). Up to now, several configurations have been studied, giving a millimetric axial resolution by applying to the US a microsecond pulse regime, as is the case with conventional echography. We introduce a new approach called Acousto-Optical Coherence Tomography (A...

  4. Optical coherence tomography—current technology and applications in clinical and biomedical research

    OpenAIRE

    2011-01-01

    Optical coherence tomography (OCT) is a noninvasive imaging technique that provides real-time two- and three-dimensional images of scattering samples with micrometer resolution. By mapping the local reflectivity, OCT visualizes the morphology of the sample. In addition, functional properties such as birefringence, motion, or the distributions of certain substances can be detected with high spatial resolution. Its main field of application is biomedical imaging and diagnostics. In ophthalmolog...

  5. OPTICAL COHERENCE TOMOGRAPHY HEART TUBE IMAGE DENOISING BASED ON CONTOURLET TRANSFORM

    OpenAIRE

    GUO, QING; SUN, SHUIFA; DONG, FANGMIN; GAO, BRUCE Z.; Wang, Rui

    2012-01-01

    Optical Coherence Tomography(OCT) gradually becomes a very important imaging technology in the Biomedical field for its noninvasive, nondestructive and real-time properties. However, the interpretation and application of the OCT images are limited by the ubiquitous noise. In this paper, a denoising algorithm based on contourlet transform for the OCT heart tube image is proposed. A bivariate function is constructed to model the joint probability density function (pdf) of the coefficient and it...

  6. The invasive assessment of coronary atherosclerosis and stents using optical coherence tomography: a clinical update

    OpenAIRE

    Asrar ul Haq, Muhammad; Layland, Jamie; Mutha, Vivek; Barlis, Peter

    2013-01-01

    Ischaemic heart disease (IHD) remains one of the leading causes of death. Atherosclerosis has been intensely researched given the IHD prevalence and the financial impacts on healthcare systems. More recently, in vivo characterisation of coronary atherosclerotic plaque and tissue responses following stent implantation in a coronary artery has been made possible by a novel technology called optical coherence tomography (OCT). OCT is a light-based, invasive, intracoronary imaging modality long a...

  7. Cutting Edge of Traumatic Maculopathy with Spectral-domain Optical Coherence Tomography – A Review

    OpenAIRE

    Mendes, Sílvia; Campos, António; Campos, Joana; Neves, Arminda; Beselga, Diana; Fernandes, Cristina; Castro de Sousa, João Paulo

    2015-01-01

    This article reviews clinically relevant data regarding traumatic maculopathy (TM), frequently observed in clinical practice, especially due to sport or traffic accident injuries. It is characterized by transient gray-whitish retinal coloration and reduction of visual acuity (VA) with closed, blunt object globe trauma of their prior. It may be limited to the posterior pole (Berlin’s edema), or peripheral areas of the retina. Spectral-domain optical coherence tomography (SD-OCT) provides detai...

  8. Intraoperative Pachymetry Using Spectral-Domain Optical Coherence Tomography during Accelerated Corneal Collagen Crosslinking

    OpenAIRE

    Marco Yu; Wong, Victoria W. Y.; Vishal Jhanji; Sayantan Biswas; Chow, Vanissa W. S.

    2013-01-01

    Purpose. To evaluate the role of spectral-domain optical coherence tomography (SDOCT) to measure corneal thickness during accelerated corneal crosslinking (CXL). Methods. Intraoperative pachymetry was performed using SDOCT and ultrasound pachymetry (USP) in 6 eyes of 6 patients with keratoconus. Pachymetry readings were obtained at baseline, after epithelium removal and after 30 minutes of riboflavin instillation. SDOCT measurements of eyes with and without lid speculum during riboflavin inst...

  9. In vivo volumetric imaging of chicken retina with ultrahigh-resolution spectral domain optical coherence tomography

    OpenAIRE

    Moayed, Alireza Akhlagh; Hariri, Sepideh; Song, Eun Sun; Choh, Vivian; Bizheva, Kostadinka

    2011-01-01

    The chicken retina is an established animal model for myopia and light-associated growth studies. It has a unique morphology: it is afoveate and avascular; oxygen and nutrition to the inner retina is delivered by a vascular tissue (pecten) that protrudes into the vitreous. Here we present, to the best of our knowledge, the first in vivo, volumetric high-resolution images of the chicken retina. Images were acquired with an ultrahigh-resolution optical coherence tomography (UHROCT) system with ...

  10. Experimental confirmation of potential swept source optical coherence tomography performance limitations

    OpenAIRE

    Zheng, Kathy; Liu, Bin; Huang, Chuanyong; Brezinski, Mark E.

    2008-01-01

    Optical coherence tomography (OCT) has demonstrated considerable potential for a wide range of medical applications. Initial work was done in the time domain OCT (TD-OCT) approach, but recent interest has been generated with spectral domain OCT (SD-OCT) approaches. While SD-OCT offers higher data acquisition rates and no movable parts, we recently pointed out theoretical inferior aspects to its performance relative to TD-OCT. In this paper we focus on specific limitations of swept source OCT ...

  11. Anti-Spoof Reliable Biometry of Fingerprints Using En-Face Optical Coherence Tomography

    OpenAIRE

    Mohammad-Reza Nasiri-Avanaki; Alexander Meadway; Adrian Bradu; Rohollah Mazrae Khoshki; Ali Hojjatoleslami; Adrian Gh. Podoleanu

    2011-01-01

    Optical coherence tomography (OCT) is a relatively new imaging technology which can produce high-reso- lution images of three-dimensional structures. OCT has been mainly used for medical applications such as for ophthalmology and dermatology. In this study we demonstrate its capability in providing much more re- liable biometry identification of fingerprints than conventional methods. We prove that OCT can serve se- cure control of genuine fingerprints as it can detect if extra layers are pla...

  12. Optical Coherence Tomography (OCT) of Collagen in Normal Skin and Skin Fibrosis

    OpenAIRE

    Babalola, Olubukola; Mamalis, Andrew; Lev-Tov, Hadar; Jagdeo, Jared

    2013-01-01

    Optical coherence tomography (OCT) is a non-invasive imaging modality that is transforming clinical diagnosis in dermatology and other medical fields. OCT provides a cross-sectional evaluation of the epidermis and dermis and allows in vivo imaging of skin collagen. Upregulated collagen content is a key feature of fibrotic skin diseases. These diseases are often managed by the practitioner’s subjective assessment of disease severity and response to therapies. The purpose of this review is to p...

  13. Structural and functional imaging of 3D microfluidic mixers using optical coherence tomography

    OpenAIRE

    Xi, Chuanwu; Marks, Daniel L.; Parikh, Devang S.; Raskin, Lutgarde; BOPPART, STEPHEN A.

    2004-01-01

    To achieve high mixing efficiency in microfluidic devices, complex designs are often required. Microfluidic devices have been evaluated with light and confocal microscopy, but fluid-flow characteristics at different depths are difficult to separate from the en face images produced. By using optical coherence tomography (OCT), an imaging modality capable of imaging 3D microstructures at micrometer-scale resolutions over millimeter-size scales, we obtained 3D dynamic functional and structural d...

  14. Pixelation effect removal from fiber bundle probe based optical coherence tomography imaging

    OpenAIRE

    Han, Jae-Ho; Lee, Junghoon; Kang, Jin U

    2010-01-01

    A method of eliminating pixelization effect from en face optical coherence tomography (OCT) image when a fiber bundle is used as an OCT imaging probe is presented. We have demonstrated that applying a histogram equalization process before performing a weighted-averaged Gaussian smoothing filter to the original lower gray level intensity based image not only removes the structural artifact of the bundle but also enhances the image quality with minimum blurring of object’s image features. The m...

  15. Mapping Molecular Agents Distributions in Whole Mice Hearts Using Born-Normalized Optical Projection Tomography

    OpenAIRE

    Feruglio, Paolo Fumene; Razansky, Daniel; Gorbatov, Rostic; Ntziachristos, Vasilis; Sbarbati, Andrea; Vinegoni, Claudio; Nahrendorf, Matthias; Weissleder, Ralph

    2012-01-01

    To date there is a lack of tools to map the spatio-temporal dynamics of diverse cells in experimental heart models. Conventional histology is labor intensive with limited coverage, whereas many imaging techniques do not have sufficiently high enough spatial resolution to map cell distributions. We have designed and built a high resolution, dual channel Born-normalized near-infrared fluorescence optical projection tomography system to quantitatively and spatially resolve molecular agents distr...

  16. Time-resolved Optical Tomography instrumentation for fast 3D functional imaging.

    OpenAIRE

    Jennions, D. K.

    2008-01-01

    Optical Tomography is a medical imaging method for creating three-dimensional images using near infrared light. An instrument, named MONSTIR (Multi-channel Opto-electronic Near-infrared System for Time-resolved Image Reconstruction), has been designed and built to measure the flight times of photons between two positions on the surface of the tissue being imaged. The measurements are used to generate functional images of the newborn infant brain, and to detect and classify breast disease. The...

  17. Fast retinal layer segmentation of spectral domain optical coherence tomography images

    Science.gov (United States)

    Zhang, Tianqiao; Song, Zhangjun; Wang, Xiaogang; Zheng, Huimin; Jia, Fucang; Wu, Jianhuang; Li, Guanglin; Hu, Qingmao

    2015-09-01

    An approach to segment macular layer thicknesses from spectral domain optical coherence tomography has been proposed. The main contribution is to decrease computational costs while maintaining high accuracy via exploring Kalman filtering, customized active contour, and curve smoothing. Validation on 21 normal volumes shows that 8 layer boundaries could be segmented within 5.8 s with an average layer boundary error retinal layer boundaries.

  18. Magnetic and Contrast Properties of Labeled Platelets for Magnetomotive Optical Coherence Tomography

    OpenAIRE

    Oldenburg, Amy L; GALLIPPI, CATERINA M.; Tsui, Frank; Nichols, Timothy C.; Beicker, Kellie N.; Chhetri, Raghav K; Spivak, Dmitry; Richardson, Aaron; Fischer, Thomas H

    2010-01-01

    This article introduces a new functional imaging paradigm that uses optical coherence tomography (OCT) to detect rehydrated, lyophilized platelets (RL platelets) that are in the preclinical trial stage and contain superparamagnetic iron oxides (SPIOs) approved by the U.S. Food and Drug Administration. Platelets are highly functional blood cells that detect and adhere to sites of vascular endothelial damage by forming primary hemostatic plugs. By applying magnetic gradient forces, induced nano...

  19. IN VIVO FIBER BASED HIGH SPEED OPTICAL COHERENCE TOMOGRAPHY IMAGES OF HUMAN FINGER

    Directory of Open Access Journals (Sweden)

    S. Kumari

    2011-08-01

    Full Text Available A High Speed Optical Coherence Tomography (OCT system based on single mode fiber which can capture eight images per second was used to acquire real time OCT images of human finger in vivo. The axial resolution of the set up was estimated to be 18 ?m. With this OCT images, the thickness of stratum corneum of the fingertip, finger pad and finger nail is evaluated.

  20. Characteristics of polyacrylamide gel with THPC and Turnbull Blue gel dosimeters evaluated using optical tomography

    International Nuclear Information System (INIS)

    The purpose of this study was to compare characteristics of radiochromic gel – Turnbull Blue gel (TB gel) with polymer gel – polyacrylamide gel and tetrakis hydroxymethyl phosphonium chloride (PAGAT) using optical tomography. Both types of gels were examined in terms of dose sensitivity, dose response linearity and background value of spectrophotometric absorbance. The calibration curve was obtained for 60Co irradiation performed on Gammacell 220 at predefined gamma dose levels between 0 and 140 Gy for TBG and 0–15 Gy for PAGAT. To measure relative dose distributions from stereotactic irradiation, dosimeters were irradiated on Leksell Gamma Knife Perfexion. The cylindrical glass housings filled with gel were attached to the stereotactic frame. They were exposed with single shot and 16 mm collimator by 65 Gy to a 50% prescription isodose for TB gel and 4 Gy to a 50% prescription isodose for PAGAT. Evaluations of dosimeters were performed on an UV–vis Spectrophotometer Helios β and an optical cone beam homemade tomography scanner with a 16-bit astronomy CCD camera with a set of color filters. The advantages and potential disadvantages for both types of gel dosimeters were summarized. Dose distribution in central slice and measured profiles of 16 mm shot shows excellent correspondence with treatment planning system Leksell GammaPlan® for both PAGAT and Turnbull Blue gels. - highlights: • Gel dosimeters are suitable for steep dose gradient verification. • An optical tomography evaluation method is successful. • Dose response characteristics of TB gel and PAGAT gel are presented

  1. Development of a robust and fast calibration procedure for diffuse optical tomography

    Science.gov (United States)

    Xu, Chen; Li, Hai; Yuan, Guangqian; Vavadi, Hamed; Zhu, Quing

    2015-03-01

    Near infrared (NIR) diffuse optical tomography has demonstrated great potential in the initial diagnosis of tumor and the assessment of tumor vasculature response to neoadjuvant chemotherapy. A fast and robust data processing is critical to move this technique from lab research to bench-side application. Our lab developed frequency-domain diffuse optical tomography system for clinical applications. So far, we still collect data at hospital and do the data processing off-line. In this paper, a robust calibration procedure and fast processing program were developed to overcome this limitation. Because each detection channel had its own electronic delay, the calibration procedure measured amplitude linearity and phase linearity of each channel, and formed a look-up table. The experimental measurements were corrected by the table and the fitting accuracy improved by 45.8%. To further improve the processing speed, the data collection and processing program were converted to C++ from matlab program. The overall processing speed was improved by two times. We expect the new processing program can move diffuse optical tomography one step close to bench-side clinical applications.

  2. Multiple Object Adaptive Optics: Mixed NGS/LGS tomography

    Science.gov (United States)

    Morris, Tim; Gendron, Eric; Basden, Alastair; Martin, Olivier; Osborn, James; Henry, David; Hubert, Zoltan; Sivo, Gaetano; Gratadour, Damien; Chemla, Fanny; Sevin, Arnaud; Cohen, Matthieu; Younger, Eddy; Vidal, Fabrice; Wilson, Richard; Batterley, Tim; Bitenc, Urban; Reeves, Andrew; Bharmal, Nazim; Raynaud, Henri-François; Kulcsar, Caroline; Conan, Jean-Marc; Guzman, Dani; De Cos Juez, Javier; Huet, Jean-Michel; Perret, Denis; Dickson, Colin; Atkinson, David; Baillie, Tom; Longmore, Andy; Todd, Stephen; Talbot, Gordon; Morris, Simon; Myers, Richard; Rousset, Gérard

    2013-12-01

    Open-loop adaptive optics has been successfully demonstrated on-sky by several groups, including the fully tomographic MOAO demonstration made using CANARY. MOAO instrumentation such as RAVEN will deliver the first astronomical science and other planned instruments aim to extend both open-loop AO performance and the number of corrected fields. Many of these planned systems rely on the use of tomographic open-loop LGS wavefront sensing. Here we present results from the combined NGS/LGS tomographic CANARY system and then compare the NGS- and LGS-based tomographic system performance. We identify the major system performance drivers, and highlight some potential routes for further exploitation of open-loop tomographic AO.

  3. Optical tomography in the application of the surface feature extraction

    Science.gov (United States)

    Li, Baosheng; Wang, Yicheng; Yang, Jiuchun

    2015-11-01

    This paper put forwards a new optical tomographic imaging system, which consists of the rotating periscope system and modulating plate with 65 slits. One-dimensional signals which are divided by modulating plate through the rotating periscope system are collected by photon detector. The paper analyzes the principle of filter back projection (FBP), and chooses the filter that fits the system. It verifies the feasibility of this system by the actual simulation. Choose the circular hole and the calibration image as the target image in scanning experiment, in result of finding that the feature of reconstruction result is obvious, but information of edges is fade. This system plays an important role in developing feature extraction of surface.

  4. Versatile Wideband Balanced Detector for Quantum Optical Homodyne Tomography

    CERN Document Server

    Kumar, Ranjeet; MacRae, Andrew; Cairns, E; Huntington, E H; Lvovsky, A I

    2011-01-01

    We present a comprehensive theory and an easy to follow method for the design and construction of a wideband homodyne detector for time-domain quantum measurements. We show how one can evaluate the performance of a detector in a specific time-domain experiment based on electronic spectral characteristic of that detector. We then present and characterize a high-performance detector constructed using inexpensive, commercially available components such as low-noise high-speed operational amplifiers and high-bandwidth photodiodes. Our detector shows linear behavior up to a level of over 13 dB clearance between shot noise and electronic noise, in the range from DC to 100 MHz. The detector can be used for measuring quantum optical field quadratures both in the continuous-wave and pulsed regimes with pulse repetition rates up to about 250 MHz.

  5. Spectral-Domain Optical Coherence Tomography for Glaucoma Diagnosis

    Science.gov (United States)

    Gracitelli, Carolina P.B; Abe, Ricardo Y; Medeiros, Felipe A

    2015-01-01

    Identification of structural damage to the optic nerve and retinal nerve fiber layer (RNFL) is an essential component of diagnosis and management of glaucoma. The introduction of spectral-domain OCT (SD-OCT) has allowed objective quantification of damage to these structures with unprecedented resolution. In addition, recent attention has been directed towards imaging the macular area for quantifying loss of neural tissue caused by the disease. Many studies have evaluated and compared the diagnostic accuracies of a variety of parameters that can be obtained from imaging these areas of the ocular fundus. In this article, we critically review the existing literature evaluating the diagnostic accuracy of SD-OCT in glaucoma and we discuss issues related to how SD-OCT results should be incorporated into clinical practice. PMID:26069519

  6. Imaging of collagen deposition disorders using optical coherence tomography

    DEFF Research Database (Denmark)

    Ring, H C; Mogensen, M; Hussain, A A; Steadman, N; Banzhaf, C; Themstrup, L; Jemec, G B

    2015-01-01

    BACKGROUND: Collagen deposition disorders such as hypertrophic scars, keloids and scleroderma can be associated with significant stigma and embarrassment. These disorders often constitute considerable impairment to quality of life, with treatment posing to be a substantial challenge. Optical...... lesion type. Hypertrophic scars displayed an increased vascularity and signal-rich bands correlating to excessive collagen deposition. Keloids depicted a disarray of hyper-reflective areas primarily located in the upper dermis. Additionally, the dermis displayed a heterogeneous morphology without...... indications of any vascular supply or lymphatic network. In contrast to keloids, scleroderma displayed a more cohesive backscattering indicating a difference in density of collagen or other dermal structures. OCT images demonstrated no significant differences between mean density measurements in OCT images of...

  7. Time resolved optical tomography of the human forearm

    Science.gov (United States)

    Hillman, Elizabeth M. C.; Hebden, Jeremy C.; Schweiger, Martin; Dehghani, Hamid; Schmidt, Florian E. W.; Delpy, David T.; Arridge, Simon R.

    2001-04-01

    A 32-channel time-resolved optical imaging instrument has been developed principally to study functional parameters of the new-born infant brain. As a prelude to studies on infants, the device and image reconstruction methodology have been evaluated on the adult human forearm. Cross-sectional images were generated using time-resolved measurements of transmitted light at two wavelengths. All data were acquired using a fully automated computer-controlled protocol. Images representing the internal scattering and absorbing properties of the arm are presented, as well as images that reveal physiological changes during a simple finger flexion exercise. The results presented in this paper represent the first simultaneous tomographic reconstruction of the internal scattering and absorbing properties of a clinical subject using purely temporal data, with additional co-registered difference images showing repeatable absorption changes at two wavelengths in response to exercise.

  8. NONINVASIVE DIAGNOSIS OF BLADDER CANCER BY CROSS-POLARIZATION OPTICAL COHERENCE TOMOGRAPHY: A BLIND STATISTICAL STUDY

    Directory of Open Access Journals (Sweden)

    O. S. Streltsova

    2014-07-01

    Full Text Available Whether cross-polarization (CP optical coherence tomography (OCT could be used to detect early bladder cancer was ascertained; it was compared with traditional OCT within the framework of blind (closed clinical statistical studies. One hundred and sixteen patients with local nonexophytic (flat pathological processes of the bladder were examined; 360 CP OCT images were obtained and analyzed. The study used an OCT 1300-U CP optical coherence tomographer. CP OCT showed a high (94% sensitivity and a high (84% specificity in the identification of suspected nonexophytic areas in the urinary bladder.

  9. Laser tissue coagulation and concurrent optical coherence tomography through a double-clad fiber coupler

    OpenAIRE

    Beaudette, Kathy; Baac, Hyoung Won; Madore, Wendy-Julie; Villiger, Martin; Godbout, Nicolas; Bouma, Brett E; Boudoux, Caroline

    2015-01-01

    Double-clad fiber (DCF) is herein used in conjunction with a double-clad fiber coupler (DCFC) to enable simultaneous and co-registered optical coherence tomography (OCT) and laser tissue coagulation. The DCF allows a single channel fiber-optic probe to be shared: i.e. the core propagating the OCT signal while the inner cladding delivers the coagulation laser light. We herein present a novel DCFC designed and built to combine both signals within a DCF (>90% of single-mode transmission; >65% mu...

  10. Acousto-optical coherence tomography with a digital holographic detection scheme

    CERN Document Server

    Gross, Michel; Benoit, Emilie; Bossy, Emmanuel; Farahi, Salma; 10.1364/OL.37.003216

    2012-01-01

    Acousto-optical coherence tomography (AOCT) consists in using random phase jumps on ultrasound and light to achieve a millimeter resolution when imaging thick scattering media. We combined this technique with heterodyne off-axis digital holography. Two-dimensional images of absorbing objects embedded in scattering phantoms are obtained with a good signal-to-noise ratio. We study the impact of the phase modulation characteristics on the amplitude of the acousto-optic signal and on the contrast and apparent size of the absorbing inclusion.

  11. Three-dimensional diffuse optical tomography of osteoarthritis: a study of 38 finger joints

    Science.gov (United States)

    Zhang, Qizhi; Yuan, Zhen; Sobel, Eric S.; Jiang, Huabei

    2009-02-01

    Our previous work has shown that near-infrared diffuse optical tomography has the potential to be a clinical tool in diagnosis of osteoarthritis. Here we report a study of 38 joints from 38 females, including 20 OA and 18 healthy joints. The quantitative results obtained show that there exists clear difference between OA and healthy joints in terms of the ratio of optical properties of the joint soft tissues to that of the associated bone. Statistic analysis of these clinical data is also presented.

  12. Spectral Domain Optical Coherence Tomography in Simple Retina Pigment Epithelium Hamartoma

    OpenAIRE

    Melis Palamar Onay; Ayşe Yağcı

    2012-01-01

    To report the spectral-domain optical coherence tomographic findings in a case of a simple hamartoma of the retinal pigment epithelium. A 55-year-old female patient with simple hamartoma of the retinal pigment epithelium was evaluated with ultrasonography and spectraldomain optic coherence tomography. The patient was found to have a pitch-black lesion measuring one-half of the disk diameter, located at about 1 disk diameter temporal to the foveola. B-mode ultrasonogram revealed a 0.8...

  13. Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging

    International Nuclear Information System (INIS)

    For bioluminescence imaging studies in small animals, it is important to be able to accurately localize the three-dimensional (3D) distribution of the underlying bioluminescent source. The spectrum of light produced by the source that escapes the subject varies with the depth of the emission source because of the wavelength-dependence of the optical properties of tissue. Consequently, multispectral or hyperspectral data acquisition should help in the 3D localization of deep sources. In this paper, we describe a framework for fully 3D bioluminescence tomographic image acquisition and reconstruction that exploits spectral information. We describe regularized tomographic reconstruction techniques that use semi-infinite slab or FEM-based diffusion approximations of photon transport through turbid media. Singular value decomposition analysis was used for data dimensionality reduction and to illustrate the advantage of using hyperspectral rather than achromatic data. Simulation studies in an atlas-mouse geometry indicated that sub-millimeter resolution may be attainable given accurate knowledge of the optical properties of the animal. A fixed arrangement of mirrors and a single CCD camera were used for simultaneous acquisition of multispectral imaging data over most of the surface of the animal. Phantom studies conducted using this system demonstrated our ability to accurately localize deep point-like sources and show that a resolution of 1.5 to 2.2 mm for depths up to 6 mm can be achieved. We also include an in vivo study of a mouse with a brain tumour expressing firefly luciferase. Co-registration of the reconstructed 3D bioluminescent image with magnetic resonance images indicated good anatomical localization of the tumour

  14. Hyperspectral and multispectral bioluminescence optical tomography for small animal imaging

    Energy Technology Data Exchange (ETDEWEB)

    Chaudhari, Abhijit J [Signal and Image Processing Institute, Department of Electrical Engineering-Systems, University of Southern California, Los Angeles, CA 90089 (United States); Darvas, Felix [Signal and Image Processing Institute, Department of Electrical Engineering-Systems, University of Southern California, Los Angeles, CA 90089 (United States); Bading, James R [Department of Radiology, University of Southern California, Los Angeles, CA 90033 (United States); Moats, Rex A [Department of Radiology, University of Southern California, Los Angeles, CA 90033 (United States); Conti, Peter S [Department of Radiology, University of Southern California, Los Angeles, CA 90033 (United States); Smith, Desmond J [Department of Molecular and Medical Pharmacology, UCLA School of Medicine, Los Angeles, CA 90095 (United States); Cherry, Simon R [Department of Biomedical Engineering, University of California-Davis, Davis, CA 95616 (United States); Leahy, Richard M [Signal and Image Processing Institute, Department of Electrical Engineering-Systems, University of Southern California, Los Angeles, CA 90089 (United States)

    2005-12-07

    For bioluminescence imaging studies in small animals, it is important to be able to accurately localize the three-dimensional (3D) distribution of the underlying bioluminescent source. The spectrum of light produced by the source that escapes the subject varies with the depth of the emission source because of the wavelength-dependence of the optical properties of tissue. Consequently, multispectral or hyperspectral data acquisition should help in the 3D localization of deep sources. In this paper, we describe a framework for fully 3D bioluminescence tomographic image acquisition and reconstruction that exploits spectral information. We describe regularized tomographic reconstruction techniques that use semi-infinite slab or FEM-based diffusion approximations of photon transport through turbid media. Singular value decomposition analysis was used for data dimensionality reduction and to illustrate the advantage of using hyperspectral rather than achromatic data. Simulation studies in an atlas-mouse geometry indicated that sub-millimeter resolution may be attainable given accurate knowledge of the optical properties of the animal. A fixed arrangement of mirrors and a single CCD camera were used for simultaneous acquisition of multispectral imaging data over most of the surface of the animal. Phantom studies conducted using this system demonstrated our ability to accurately localize deep point-like sources and show that a resolution of 1.5 to 2.2 mm for depths up to 6 mm can be achieved. We also include an in vivo study of a mouse with a brain tumour expressing firefly luciferase. Co-registration of the reconstructed 3D bioluminescent image with magnetic resonance images indicated good anatomical localization of the tumour.

  15. Full-Field Birefringence Imaging by Thermal-Light Polarization-Sensitive Optical Coherence Tomography. I. Theory

    OpenAIRE

    Moreau, Julien; Loriette, V; Boccara, A.C.

    2003-01-01

    A method for measuring birefringence by use of thermal-light polarization-sensitive optical coherence tomography is presented. The use of thermal light brings to polarization-sensitive optical coherence tomography a resolution in the micrometer range in three dimensions. The instrument is based on a Linnik interference microscope and makes use of achromatic quarter-wave plates. A mathematical representation of the instrument is presented here, and the detection scheme is described, together w...

  16. In vivo, label-free, three-dimensional quantitative imaging of kidney microcirculation using Doppler optical coherence tomography (DOCT)

    OpenAIRE

    Wierwille, Jeremiah; Andrews, Peter M.; Onozato, Maristela L; Jiang, James; Cable, Alex; Chen, Yu

    2011-01-01

    Doppler optical coherence tomography (DOCT) is a functional extension of optical coherence tomography (OCT) and is currently being employed in several clinical arenas to quantify blood flow in vivo. In this study, the objective was to investigate the feasibility of DOCT to image kidney microcirculation, specifically, glomerular blood flow. DOCT is able to capture 3D data sets consisting of a series of cross-sectional images in real time, which enables label-free and non-destructive quantifica...

  17. Improvement of tissue analysis and classification using optical coherence tomography combined with Raman spectroscopy

    Science.gov (United States)

    Liu, Chih-Hao; Qi, Ji; Lu, Jing; Wang, Shang; Wu, Chen; Shih, Wei-Chuan; Larin, Kirill V.

    2014-02-01

    Optical coherence tomography (OCT) is an optical imaging technique that is capable of performing high-resolution (approaching the histopathology level) and real-time imaging of tissues without use of contrast agents. Based on these advantages, the pathological features of tumors (in micro scale) can be identified during resection surgery. However, the accuracy of tumor margin prediction still needs to be enhanced for assisting the judgment of surgeons. In this regard, we present a two-dimensional computational method for advanced tissue analysis and characterization based on optical coherence tomography (OCT) and Raman spectroscopy (RS). The method combines the slope of OCT intensity signal and the Principal component (PC) of RS, and relies on the tissue optical attenuation and chemical ingredients for the classification of tissue types. Our pilot experiments were performed on mouse kidney, liver and small intestine. Results demonstrate the improvement of the tissue differentiation compared with the analysis only based on the OCT detection. This combined OCT/RS method is potentially useful as a novel optical biopsy technique for cancer detection.

  18. Diffuse optical tomography and spectroscopy of breast cancer and fetal brain

    Science.gov (United States)

    Choe, Regine

    Diffuse optical techniques utilize light in the near infrared spectral range to measure tissue physiology non-invasively. Based on these measurements, either on average or a three-dimensional spatial map of tissue properties such as total hemoglobin concentration, blood oxygen saturation and scattering can be obtained using model-based reconstruction algorithms. In this thesis, diffuse optical techniques were applied for in vivo breast cancer imaging and trans-abdominal fetal brain oxygenation monitoring. For in vivo breast cancer imaging, clinical diffuse optical tomography and related instrumentation was developed and used in several contexts. Bulk physiological properties were quantified for fifty-two healthy subjects in the parallel-plate transmission geometry. Three-dimensional images of breast were reconstructed for subjects with breast tumors and, tumor contrast with respect to normal tissue was found in total hemoglobin concentration and scattering and was quantified for twenty-two breast carcinomas. Tumor contrast and tumor volume changes during neoadjuvant chemotherapy were tracked for one subject and compared to the dynamic contrast-enhanced MRI. Finally, the feasibility for measuring blood flow of breast tumors using optical methods was demonstrated for seven subjects. In a qualitatively different set of experiments, the feasibility for trans-abdominal fetal brain oxygenation monitoring was demonstrated on pregnant ewes with induced fetal hypoxia. Preliminary clinical experiences were discussed to identify future directions. In total, this research has translated diffuse optical tomography techniques into clinical research environment.

  19. Quantum Process Tomography of a Room Temperature Optically-Controlled Phase Shift

    Science.gov (United States)

    Kupchak, Connor; Rind, Samuel; Figueroa, Eden; Stony Brook University Team

    2015-05-01

    We have developed a room temperature setup capable of optically controlled phase shifts on a weak probe field. Our system is realized in a vapor of 87Rb atoms under the conditions of electromagnetically induced transparency utilizing a N-type energy level scheme coupled by three optical fields. By varying the power of the signal field, we can control the size of an optical phase shift experienced by weak coherent state pulses of ~ 1 , propagating through the vapor. We quantify the optical phase shift by measuring the process output via balanced homodyne tomography which provides us with the complete quadrature and phase information of the output states. Furthermore, we measure the output for a set of states over a subspace of the coherent state basis and gain the information to completely reconstruct our phase shift procedure by coherent state quantum process tomography. The reconstruction yields a rank-4 process superoperator which grants the ability to predict how our phase shift process will behave on an arbitrary quantum optical state in the mode of the reconstruction. Our results demonstrate progress towards room temperature systems for possible quantum gates; a key component of a future quantum processor designed to operate at room temperature. US-Navy Office of Naval Research N00141410801, National Science Foundation PHY-1404398, Natural Sciences and Engineering Research Council of Canada.

  20. Theoretical and Experimental Study of Optical Coherence Tomography (OCT) Signals Using an Analytical Transport Model

    International Nuclear Information System (INIS)

    Optical coherence tomography (OCT) is a non-invasive low coherent interferometric technique that provides cross-sectional images of turbid media. OCT is based on the classical Michelson interferometer where the mirror of the reference arm is oscillating and the signal arm contains a biological sample. In this work, we analyzed theoretically the heterodyne optical signal adopting the so called extended Huygens-Fresnel principle (EHFP). We use simulated OCT images with known optical properties to test an algorithm developed by ourselves to recover the scattering coefficient and we recovered the scattering coefficient with a relative error less than 5% for noisy signals. In addition, we applied this algorithm to OCT images from phantoms of known optical properties; in this case curves were indistinguishable. A revision of the validity of the analytical model applied to our system should be done.

  1. Optical computer aided tomography measurements of plasma uniformity in an inductively coupled discharge

    Science.gov (United States)

    Benck, E. C.; Roberts, J. R.

    1998-11-01

    Optical computer aided tomography (CAT) is being investigated as a potential in situ diagnostic for measuring plasma uniformity without making assumptions concerning the plasma symmetry. The presence of an opaque vacuum chamber wall severely limits the different directions from which optical emission measurements can be made of the plasma. The tomographic inversion problem with restricted optical access is being solved using Tikhonov regularization. The accuracy of this inversion process is investigated for several different observation geometries using theoretical test data generated from known distributions. Optical CAT is applied to an ICP-GEC plasma source, with all the measurements made through a single large 152 mm diameter window. Axially asymmetric plasma distributions are demonstrated as a function of gas flowrate and gas composition.

  2. Optical characters and texture maps of skin and the aging mechanism by use of multiphoton microscopy and optical coherence tomography

    Science.gov (United States)

    Wu, Shulian; Li, Hui; Zhang, Xiaoman; Huang, Yudian; Xu, Xiaohui

    2012-03-01

    Cutaneous aging is a complicated biological process affecting different constituents of skin, which can be divided into two types: the chronological aging and the photo-aging. The two cutaneous aging processes often co-exist accompanying with each other. The effects are often overlapped including changes in epithelium and dermis. The degeneration of collagen is a major factor in dermal alteration with aging. In this study, multiphoton microscopy (MPM) with its high resolution imaging and optical coherence tomography (OCT) with its depth resolved imaging were used to study the anti-aging dermatology in vivo. It was attempted to make the optical parameter and texture feature to evaluate the process of aging skin using mathematical image processing. The links among optical parameter, spectrum and texture feature in collagen with aging process were established to uncover mechanism of aging skin.

  3. Changes in retinal nerve fiber layer and optic disc algorithms by optical coherence tomography in glaucomatous Arab subjects

    Directory of Open Access Journals (Sweden)

    Zeried FM

    2013-09-01

    Full Text Available Ferial M Zeried, Uchechukwu L Osuagwu Department of Optometry and Vision Sciences College of Applied Medical Sciences, King Saud University, Riyadh, Kingdom of Saudi Arabia Purpose: To assess the difference in retinal nerve fiber layer (RNFL and optic disc algorithms between glaucomatous and normal Arab subjects using optical coherence tomography (OCT. Methods: RNFL thickness and optic disc parameters were obtained in 65 patients aged 50.1 ± 7.7 years. Percentage differences in all parameters were calculated and analyzed between groups. Results: The mean RNFL thickness around the disc and at all quadrants was significantly thinner in glaucomatous eyes than in normal eyes (P < 0.01. The greatest decrease in RNFL thickness was observed at the inferior (39.5% and superior (39.3% quadrants and at 1 o’clock (43% and 5 o’clock (40% hour sectors. Significant differences were observed between glaucomatous and control eyes in all disc parameters (P < 0.005 assessed. The disc area, cup area, mean cup/disc ratio, and vertical and horizontal cup/disc ratios were significantly larger (P < 0.01, whereas the vertical integrated rim area, horizontal integrated rim width, and rim area were significantly smaller (P < 0.001 in glaucomatous eyes than in normal eyes. Conclusion: Stratus OCT is still a valuable tool in the diagnosis of early glaucoma changes and, as such, its use should be encouraged in glaucoma clinics in Saudi Arabia. The best OCT parameters for detecting early glaucoma change were RNFL thickness in the inferior, superior, and 1 o’clock hour sector; the cup area; and the vertical integrated rim area of the optic disc. Keywords: glaucoma, Stratus optical coherence tomography, optic disc, retinal nerve fiber layer (RNFL, age, Saudi Arabia

  4. Spectral-domain optical coherence tomography staging and autofluorescence imaging in achromatopsia.

    Science.gov (United States)

    Greenberg, Jonathan P; Sherman, Jerome; Zweifel, Sandrine A; Chen, Royce W S; Duncker, Tobias; Kohl, Susanne; Baumann, Britta; Wissinger, Bernd; Yannuzzi, Lawrence A; Tsang, Stephen H

    2014-04-01

    IMPORTANCE Evidence is mounting that achromatopsia is a progressive retinal degeneration, and treatments for this condition are on the horizon. OBJECTIVES To categorize achromatopsia into clinically identifiable stages using spectral-domain optical coherence tomography and to describe fundus autofluorescence imaging in this condition. DESIGN, SETTING, AND PARTICIPANTS A prospective observational study was performed between 2010 and 2012 at the Edward S. Harkness Eye Institute, New York-Presbyterian Hospital. Participants included 17 patients (aged 10-62 years) with full-field electroretinography-confirmed achromatopsia. MAIN OUTCOMES AND MEASURES Spectral-domain optical coherence tomography features and staging system, fundus autofluorescence and near-infrared reflectance features and their correlation to optical coherence tomography, and genetic mutations served as the outcomes and measures. RESULTS Achromatopsia was categorized into 5 stages on spectral-domain optical coherence tomography: stage 1 (2 patients [12%]), intact outer retina; stage 2 (2 patients [12%]), inner segment ellipsoid line disruption; stage 3 (5 patients [29%]), presence of an optically empty space; stage 4 (5 patients [29%]), optically empty space with partial retinal pigment epithelium disruption; and stage 5 (3 patients [18%]), complete retinal pigment epithelium disruption and/or loss of the outer nuclear layer. Stage 1 patients showed isolated hyperreflectivity of the external limiting membrane in the fovea, and the external limiting membrane was hyperreflective above each optically empty space. On near infrared reflectance imaging, the fovea was normal, hyporeflective, or showed both hyporeflective and hyperreflective features. All patients demonstrated autofluorescence abnormalities in the fovea and/or parafovea: 9 participants (53%) had reduced or absent autofluorescence surrounded by increased autofluorescence, 4 individuals (24%) showed only reduced or absent autofluorescence, 3 patients (18%) displayed only increased autofluorescence, and 1 individual (6%) exhibited decreased macular pigment contrast. Inner segment ellipsoid line loss generally correlated with the area of reduced autofluorescence, but hyperautofluorescence extended into this region in 2 patients (12%). Bilateral coloboma-like atrophic macular lesions were observed in 1 patient (6%). Five novel mutations were identified (4 in the CNGA3 gene and 1 in the CNGB3 gene). CONCLUSIONS AND RELEVANCE Achromatopsia often demonstrates hyperautofluorescence suggestive of progressive retinal degeneration. The proposed staging system facilitates classification of the disease into different phases of progression and may have therapeutic implications. PMID:24504161

  5. Numerical and experimental studies of x-ray luminescence optical tomography for small animal imaging

    Science.gov (United States)

    Li, Changqing; Martínez Dávalos, Arnulfo; Cherry, Simon R.

    2013-03-01

    X-ray luminescence optical tomography (XLOT) is an emerging hybrid imaging modality in which x-ray excitable particles (phosphor particles) emit optical photons when stimulated with a collimated x-ray beam. XLOT combines the high sensitivity of optical imaging with the high spatial resolution of x-ray imaging. For XLOT reconstruction, we compared two reconstruction algorithms, conventional filtered backprojection (FBP) and a new algorithm, x-ray luminescence optical tomography with excitation priors (XLOT-EP), in which photon propagation is modeled with the diffusion equation and the x-ray beam positions are used as reconstruction priors. Numerical simulations based on dose calculations are used to validate the proposed XLOT imaging system and the reconstruction algorithms. Simulation results show that XLOT can better detect inclusions of particles than x-ray computed tomography (CT) alone. Nanoparticle concentrations reconstructed with XLOT-EP are much less dependent on target depths than those obtained with FBP. Measurements at just two orthogonal projections are sufficient for the XLOT-EP to reconstruct an XLOT image for simple source distributions. The heterogeneity of x-ray dose distribution is included in the XLOT-EP reconstruction and improves the reconstruction accuracy, suggesting that there is a need to calculate the x-ray dose distribution for experimental XLOT imaging. We have built a prototype XLOT imaging system, in which a collimated x-ray bean is used to scan the samples and an electron multiplying charge couple device (EMCCD) is used to collect the optical photons emitted by the x-ray excitable particles. Phantom experiments have been performed to validate the XLOT system and the proposed reconstruction algorithms.

  6. Optical tomography reconstruction algorithm with the finite element method: An optimal approach with regularization tools

    International Nuclear Information System (INIS)

    Highlights: •New strategies to improve the accuracy of the reconstruction through mesh and finite element parameterization. •Use of gradient filtering through an alternative inner product within the adjoint method. •An integral form of the cost function is used to make the reconstruction compatible with all finite element formulations, continuous and discontinuous. •Gradient-based algorithm with the adjoint method is used for the reconstruction. -- Abstract: Optical tomography is mathematically treated as a non-linear inverse problem where the optical properties of the probed medium are recovered through the minimization of the errors between the experimental measurements and their predictions with a numerical model at the locations of the detectors. According to the ill-posed behavior of the inverse problem, some regularization tools must be performed and the Tikhonov penalization type is the most commonly used in optical tomography applications. This paper introduces an optimized approach for optical tomography reconstruction with the finite element method. An integral form of the cost function is used to take into account the surfaces of the detectors and make the reconstruction compatible with all finite element formulations, continuous and discontinuous. Through a gradient-based algorithm where the adjoint method is used to compute the gradient of the cost function, an alternative inner product is employed for preconditioning the reconstruction algorithm. Moreover, appropriate re-parameterization of the optical properties is performed. These regularization strategies are compared with the classical Tikhonov penalization one. It is shown that both the re-parameterization and the use of the Sobolev cost function gradient are efficient for solving such an ill-posed inverse problem

  7. Optical tomography reconstruction algorithm with the finite element method: An optimal approach with regularization tools

    Energy Technology Data Exchange (ETDEWEB)

    Balima, O., E-mail: ofbalima@gmail.com [Département des Sciences Appliquées, Université du Québec à Chicoutimi, 555 bd de l’Université, Chicoutimi, QC, Canada G7H 2B1 (Canada); Favennec, Y. [LTN UMR CNRS 6607 – Polytech’ Nantes – La Chantrerie, Rue Christian Pauc, BP 50609 44 306 Nantes Cedex 3 (France); Rousse, D. [Chaire de recherche industrielle en technologies de l’énergie et en efficacité énergétique (t3e), École de technologie supérieure, 201 Boul. Mgr, Bourget Lévis, QC, Canada G6V 6Z3 (Canada)

    2013-10-15

    Highlights: •New strategies to improve the accuracy of the reconstruction through mesh and finite element parameterization. •Use of gradient filtering through an alternative inner product within the adjoint method. •An integral form of the cost function is used to make the reconstruction compatible with all finite element formulations, continuous and discontinuous. •Gradient-based algorithm with the adjoint method is used for the reconstruction. -- Abstract: Optical tomography is mathematically treated as a non-linear inverse problem where the optical properties of the probed medium are recovered through the minimization of the errors between the experimental measurements and their predictions with a numerical model at the locations of the detectors. According to the ill-posed behavior of the inverse problem, some regularization tools must be performed and the Tikhonov penalization type is the most commonly used in optical tomography applications. This paper introduces an optimized approach for optical tomography reconstruction with the finite element method. An integral form of the cost function is used to take into account the surfaces of the detectors and make the reconstruction compatible with all finite element formulations, continuous and discontinuous. Through a gradient-based algorithm where the adjoint method is used to compute the gradient of the cost function, an alternative inner product is employed for preconditioning the reconstruction algorithm. Moreover, appropriate re-parameterization of the optical properties is performed. These regularization strategies are compared with the classical Tikhonov penalization one. It is shown that both the re-parameterization and the use of the Sobolev cost function gradient are efficient for solving such an ill-posed inverse problem.

  8. Method of optical coherence tomography with parallel depth-resolved signal reception and fibre-optic phase modulators

    Energy Technology Data Exchange (ETDEWEB)

    Morozov, A N; Turchin, I V [Institute of Applied Physics, Russian Academy of Sciences, Nizhnii Novgorod (Russian Federation)

    2013-12-31

    The method of optical coherence tomography with the scheme of parallel reception of the interference signal (P-OCT) is developed on the basis of spatial paralleling of the reference wave by means of a phase diffraction grating producing the appropriate time delay in the Mach–Zehnder interferometer. The absence of mechanical variation of the optical path difference in the interferometer essentially reduces the time required for 2D imaging of the object internal structure, as compared to the classical OCT that uses the time-domain method of the image construction, the sensitivity and the dynamic range being comparable in both approaches. For the resulting field of the interfering object and reference waves an analytical expression is derived that allows the calculation of the autocorrelation function in the plane of photodetectors. For the first time a method of linear phase modulation by 2? is proposed for P-OCT systems, which allows the use of compact high-frequency (a few hundred kHz) piezoelectric cell-based modulators. For the demonstration of the P-OCT method an experimental setup was created, using which the images of the inner structure of biological objects at the depth up to 1 mm with the axial spatial resolution of 12 ?m were obtained. (optical coherence tomography)

  9. Method of optical coherence tomography with parallel depth-resolved signal reception and fibre-optic phase modulators

    International Nuclear Information System (INIS)

    The method of optical coherence tomography with the scheme of parallel reception of the interference signal (P-OCT) is developed on the basis of spatial paralleling of the reference wave by means of a phase diffraction grating producing the appropriate time delay in the Mach–Zehnder interferometer. The absence of mechanical variation of the optical path difference in the interferometer essentially reduces the time required for 2D imaging of the object internal structure, as compared to the classical OCT that uses the time-domain method of the image construction, the sensitivity and the dynamic range being comparable in both approaches. For the resulting field of the interfering object and reference waves an analytical expression is derived that allows the calculation of the autocorrelation function in the plane of photodetectors. For the first time a method of linear phase modulation by 2? is proposed for P-OCT systems, which allows the use of compact high-frequency (a few hundred kHz) piezoelectric cell-based modulators. For the demonstration of the P-OCT method an experimental setup was created, using which the images of the inner structure of biological objects at the depth up to 1 mm with the axial spatial resolution of 12 ?m were obtained. (optical coherence tomography)

  10. A small animal time-resolved optical tomography platform using wide-field excitation

    Science.gov (United States)

    Venugopal, Vivek

    Small animal imaging plays a critical role in present day biomedical research by filling an important gap in the translation of research from the bench to the bedside. Optical techniques constitute an emerging imaging modality which have tremendous potential in preclinical applications. Optical imaging methods are capable of non-invasive assessment of the functional and molecular characteristics of biological tissue. The three-dimensional optical imaging technique, referred to as diffuse optical tomography, provides an approach for the whole-body imaging of small animal models and can provide volumetric maps of tissue functional parameters (e.g. blood volume, oxygen saturation etc.) and/or provide 3D localization and quantification of fluorescence-based molecular markers in vivo. However, the complex mathematical reconstruction problem associated with optical tomography and the cumbersome instrumental designs limits its adoption as a high-throughput quantitative whole-body imaging modality in current biomedical research. The development of new optical imaging paradigms is thus necessary for a wide-acceptance of this new technology. In this thesis, the design, development, characterization and optimization of a small animal optical tomography system is discussed. Specifically, the platform combines a highly sensitive time-resolved imaging paradigm with multi-spectral excitation capability and CCD-based detection to provide a system capable of generating spatially, spectrally and temporally dense measurement datasets. The acquisition of such data sets however can take long and translate to often unrealistic acquisition times when using the classical point source based excitation scheme. The novel approach in the design of this platform is the adoption of a wide-field excitation scheme which employs extended excitation sources and in the process allows an estimated ten-fold reduction in the acquisition time. The work described herein details the design of the imaging platform employing DLP-based excitation and time-gated intensified CCD detection and the optimal system operation parameters are determined. The feasibility this imaging approach and accuracy of the system in reconstructing functional parameters and fluorescence markers based on lifetime contrast is established through phantom studies. As a part of the system characterization, the effect of noise in time-resolved optical tomography is investigated and propagation of system noise in optical reconstructions is established. Furthermore, data processing and measurement calibration techniques aimed at reducing the effect of noise in reconstructions are defined. The optimization of excitation pattern selection is established through a novel measurement-guided iterative pattern correction scheme. This technique referred to as Adaptive Full-Field Optical Tomography was shown to improve reconstruction performances in murine models by reducing the dynamic range in photon flux measurements on the surface. Lastly, the application of the unique attributes of this platform to a biologically relevant imaging application, referred to as Forster Resonance Energy Transfer is described. The tomographic imaging of FRET interaction in vivo on a whole-body scale is achieved using the wide-field imaging approach based on lifetime contrast. This technique represents the first demonstration of tomographic FRET imaging in small animals and has significant potential in the development of optical imaging techniques in varied applications ranging from drug discovery to in vivo study of protein-protein interaction.

  11. A laminar optical tomography system for the early cervical cancer diagnosis

    Science.gov (United States)

    Cui, Shanshan; Jia, Mengyu; Chen, Xueying; Meng, Wei; Gao, Feng; Zhao, Huijuan

    2014-03-01

    Laminar optical tomography (LOT) is a new mesoscopic functional optical imaging technique, which is an extension of a confocal microscope and diffuse optical tomography to acquire both the coaxial and off-axis scattered light at the same time. In this paper, a LOT system with a larger detection area aiming at the in vivo detection of early cervical cancer is developed. The field of view of our system is 10 mm x 10 mm. In order to improve the image quality of the system, two methods were performed: the correction of image distortion and the restriction of returning light. The performance of the system with aperture stop was assessed by liquid phantom experiments. Comparing with the Monte Carlo simulation, the measurement results show that the average relative errors of eight different source-detector distances corresponding to 4 source points are lower than the errors of the system taking the frame of objective lens as the aperture stop by 5.7%, 4.8%, 6.1%, 6.1% respectively. Moreover, the experiment based on the phantom with specified structure and optical parameters to simulate the cervix demonstrates that the system perform well for the cervix measurement.

  12. Depth-resolved detection of electrokinetic effects in cartilage using differential phase sensitive optical coherence tomography

    Science.gov (United States)

    Youn, Jong-In; Akkin, Taner; Wong, Brian J. F.; Peavy, George M.; Milner, Thomas E.

    2003-06-01

    Osteoarthritis is a heterogeneous disease characterized by progressive loss of cartilage. The earliest biochemical features, which precede gross pathological changes, include non-uniform loss of proteoglycans associated with increase of water content in tissue and finally, fibrillation of the tissue's collagen network. Loss of proteoglycans decreases the ability of cartilage to withstand compressive loading and makes the tissue softer and more susceptible to wear and fibrilation. If the early loss of proteoglycans is detectable by a non-invasive optical technique, progression of the disease may be arrested using, for example, pharmacologic or surgical intervention. When an electric field is applied to cartilage by an electrical stimulator, the current-generated stress gradients are produced and stress deformation occurs. Since differential phase optical coherence tomography is very sensitive to subsurface stress deformation, we propose to stimulate cartilage electrically and detect stress gradients before gross signs of cartilage degeneration appear. Detection of depth-resolved electromechanical stress gradients in cartilage using differential phase optical coherence tomography may be useful to monitor non-invasively cartilage degeneration. Since the streaming potential and other electrokinetic effects in cartilage are directly proportional to proteoglycan density, application of an electric field in cartilage combined with depth-resolved phase sensitive optical measurements may provide a sensitive indicator of cartilage viability on the molecular-level.

  13. Common Path Side Viewing Monolithic Ball Lens Probe for Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Kanwarpal Singh

    2015-09-01

    Full Text Available Common path probes are highly desirable for optical coherence tomography as they reduce system complexity and cost by eliminating the need of dispersion compensation and polarization controlling optics. In this work, we demonstrate a monolithic ball lens based, common path, side viewing probe that is suitable for Fourier domain optical coherence tomography. The probe design parameters were simulated in Zemax modeling software and the simulated performance parameters were compared with experimental results. We characterized the performance of the probe by measuring its collection efficiency, resolution, and sensitivity. Our results demonstrated that with a source input power of 25 mW, we could achieve sensitivity of 100.5 dB, which is within 7 dB of the maximum possible sensitivity that could be achieved using a separate reference arm. The axial resolution of the system was found to be 15.6 µm in air and the lateral resolution (full width half maximum was approximately 49 µm. The probe optics were assembled in a 1 mm diameter hypotube with a 500 µm inner diameter. Images of finger skin acquired using this probe demonstrated clear visualization of the stratum corneum, epidermis, and papillary dermis, along with sweat ducts.

  14. Optical tomography with the discontinuous Galerkin formulation of the radiative transfer equation in frequency domain

    International Nuclear Information System (INIS)

    Optical tomography is an inverse method of probing semi-transparent media with the help of light sources. The reconstruction of the optical properties usually employs finite volumes or continuous finite elements formulations of light transport as a forward model for the predictions. In a previous study, we have introduced a generalization of the inversion approach with finite elements formulations by using an integral form of the objective function. The novelty is that the surfaces of the detectors are taken into account in the reconstruction and compatibility is obtained for all finite element formulations. This present paper illustrates this new approach by developing a Discontinuous Galerkin formulation as a forward model for an optical tomography application in the frequency domain framework. Numerical tests are performed to gauge the accuracy of the method in recovering optical properties distribution with a gradient-based algorithm where the adjoint method is used to fastly compute the objective function gradient. It is seen that the reconstruction is accurate and can be affected by noise on the measurements as expected. Filtering of the gradient at each iteration of the reconstruction is used to cope with the ill-posed nature of the inverse problem and to improves the quality and accuracy of the reconstruction.

  15. Nanometer resolution optical coherence tomography using broad bandwidth XUV and soft x-ray radiation

    Science.gov (United States)

    Fuchs, Silvio; Rödel, Christian; Blinne, Alexander; Zastrau, Ulf; Wünsche, Martin; Hilbert, Vinzenz; Glaser, Leif; Viefhaus, Jens; Frumker, Eugene; Corkum, Paul; Förster, Eckhart; Paulus, Gerhard G.

    2016-01-01

    Optical coherence tomography (OCT) is a non-invasive technique for cross-sectional imaging. It is particularly advantageous for applications where conventional microscopy is not able to image deeper layers of samples in a reasonable time, e.g. in fast moving, deeper lying structures. However, at infrared and optical wavelengths, which are commonly used, the axial resolution of OCT is limited to about 1 μm, even if the bandwidth of the light covers a wide spectral range. Here, we present extreme ultraviolet coherence tomography (XCT) and thus introduce a new technique for non-invasive cross-sectional imaging of nanometer structures. XCT exploits the nanometerscale coherence lengths corresponding to the spectral transmission windows of, e.g., silicon samples. The axial resolution of coherence tomography is thus improved from micrometers to a few nanometers. Tomographic imaging with an axial resolution better than 18 nm is demonstrated for layer-type nanostructures buried in a silicon substrate. Using wavelengths in the water transmission window, nanometer-scale layers of platinum are retrieved with a resolution better than 8 nm. XCT as a nondestructive method for sub-surface tomographic imaging holds promise for several applications in semiconductor metrology and imaging in the water window. PMID:26860894

  16. Multi-modality optical tomography for simultaneous morphological and molecular imaging

    Science.gov (United States)

    Yuan, Shuai; Li, Qian; Chen, Yu

    2009-11-01

    Optical coherence tomography (OCT) is an emerging medical imaging technology that can generate high resolution cross-sectional imaging (1-2 mm in depth) of tissue microstructure in situ and in real time. Fluorescence imaging provides tissue biochemical, metabolism, and molecular information by measuring fluorescence intensity or spectroscopy of either intrinsic fluorophores or exogenous contrast agents. The combination of these two modalities provides complementary morphological, functional and molecular information to comprehensively assess tissue status. There is a great interest to further extend the fluorescence imaging into tomography in order to provide depth-resolved molecular function that can be coregistered with 3-D tissue morphology provided by OCT. In this paper, we present a combined OCT and line-scanning fluorescence laminar optical tomography (FLOT) system for simultaneous 3-D morphological and molecular imaging with 10-100 ?m resolution and millimeter-scale imaging depth. Co-registration on a capillary phantom with fluorescence dye Cy5.5 using the system has been demonstrated.

  17. Nanometer resolution optical coherence tomography using broad bandwidth XUV and soft x-ray radiation.

    Science.gov (United States)

    Fuchs, Silvio; Rödel, Christian; Blinne, Alexander; Zastrau, Ulf; Wünsche, Martin; Hilbert, Vinzenz; Glaser, Leif; Viefhaus, Jens; Frumker, Eugene; Corkum, Paul; Förster, Eckhart; Paulus, Gerhard G

    2016-01-01

    Optical coherence tomography (OCT) is a non-invasive technique for cross-sectional imaging. It is particularly advantageous for applications where conventional microscopy is not able to image deeper layers of samples in a reasonable time, e.g. in fast moving, deeper lying structures. However, at infrared and optical wavelengths, which are commonly used, the axial resolution of OCT is limited to about 1??m, even if the bandwidth of the light covers a wide spectral range. Here, we present extreme ultraviolet coherence tomography (XCT) and thus introduce a new technique for non-invasive cross-sectional imaging of nanometer structures. XCT exploits the nanometerscale coherence lengths corresponding to the spectral transmission windows of, e.g., silicon samples. The axial resolution of coherence tomography is thus improved from micrometers to a few nanometers. Tomographic imaging with an axial resolution better than 18?nm is demonstrated for layer-type nanostructures buried in a silicon substrate. Using wavelengths in the water transmission window, nanometer-scale layers of platinum are retrieved with a resolution better than 8?nm. XCT as a nondestructive method for sub-surface tomographic imaging holds promise for several applications in semiconductor metrology and imaging in the water window. PMID:26860894

  18. Imaging osteoarthritis in the knee joints using x-ray guided diffuse optical tomography

    Science.gov (United States)

    Zhang, Qizhi; Yuan, Zhen; Sobel, Eric S.; Jiang, Huabei

    2010-02-01

    In our previous studies, near-infrared (NIR) diffuse optical tomography (DOT) had been successfully applied to imaging osteoarthritis (OA) in the finger joints where significant difference in optical properties of the joint tissues was evident between healthy and OA finger joints. Here we report for the first time that large joints such as the knee can also be optically imaged especially when DOT is combined with x-ray tomosynthesis where the 3D image of the bones from x-ray is incorporated into the DOT reconstruction as spatial a priori structural information. This study demonstrates that NIR light can image large joints such as the knee in addition to finger joints, which will drastically broaden the clinical utility of our x-ray guided DOT technique for OA diagnosis.

  19. Polarization-based balanced detection for spectral-domain optical coherence tomography.

    Science.gov (United States)

    Black, Adam J; Akkin, Taner

    2015-08-20

    We present a new design for spectral-domain optical coherence tomography that allows balanced detection using a single camera. The design uses polarization optics to encode the light in reference and sample arms. Two parallel and highly aligned spectra, which carry out-of-phase interference signals, in-phase common noise, and auto-interference terms, are focused on the camera, which performs the digital balanced detection for each wavelength. The optical system is characterized and tested for tissue imaging. Results demonstrate consistent signal gains in depth and suppression of DC and sample auto-interference. The design could be further amended for polarization-sensitive imaging and might demonstrate a market for manufacturing dual-line cameras with analog-balanced detection capability. PMID:26368760

  20. Fiber-Based Polarization Diversity Detection for Polarization-Sensitive Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Hamid Pahlevaninezhad

    2014-09-01

    Full Text Available We present a new fiber-based polarization diversity detection (PDD scheme for polarization sensitive optical coherence tomography (PSOCT. This implementation uses a new custom miniaturized polarization-maintaining fiber coupler with single mode (SM fiber inputs and polarization maintaining (PM fiber outputs. The SM fiber inputs obviate matching the optical lengths of the two orthogonal OCT polarization channels prior to interference while the PM fiber outputs ensure defined orthogonal axes after interference. Advantages of this detection scheme over those with bulk optics PDD include lower cost, easier miniaturization, and more relaxed alignment and handling issues. We incorporate this PDD scheme into a galvanometer-scanned OCT system to demonstrate system calibration and PSOCT imaging of an achromatic quarter-wave plate, fingernail in vivo, and chicken breast, salmon, cow leg, and basa fish muscle samples ex vivo.

  1. The correlation between rat retinal nerve fiber layer thickness around optic disc by using optical coherence tomography and histological measurements

    Directory of Open Access Journals (Sweden)

    Ju-Fang Huang

    2013-08-01

    Full Text Available AIM:To explore the correlation between the retinal nerve fiber layer (RNFL thickness by using optical coherence tomography (OCT and by histological measurements in normal adult rats and optic nerve transected rats.METHODS:The RNFL thickness of 36 rats was scanned in a circle 3.46mm far from the optic disc by OCT. The two experimental groups were the normal group (n=20 rats and the optic nerve transected group (n=16 rats. The latter group included 4 groups (n=4/group surviving for 1 day, 3, 5 and 7 days. Then the RNFL thickness of the same retina area was also measured by NF-200 immunohistochemical staining method. Linear regression was used to analyze the correlation between the data obtained from these two methods.RESULTS: The RNFL thickness of normal right eyes around optic disc by OCT was 72.35±5.71?m and that of the left eyes was 72.65±5.88?m (P=0.074. The RNFL thickness of the corresponding histological section by immunohistochemistry was 37.54±4.05?m (right eyes and 37.38±4.23?m (left eyes (P=0.059. There was a good correlation between the RNFL thickness measured by OCT and that measured by histology (R2=0.8131. After optic nerve transection, the trend of the RNFL thickness was thinner with the prolonged survival time. The correlation of the thickness detected by the above two methods was approximately (R2=0.8265. Value of the RNFL thickness in rats around optic disc measured by OCT was obviously higher than that measured by common histological measurement in normal adult rats and optic nerve transected rats.CONCLUSION: The RNFL thickness measured by OCT has a strong correlation with that measured by histological method. Through OCT scanning, we found that the thickness of RNFL gradually becomes thinner in a time-dependent manner.

  2. Optical distortion correction in optical coherence tomography for quantitative ocular anterior segment by three-dimensional imaging.

    Science.gov (United States)

    Ortiz, Sergio; Siedlecki, Damian; Grulkowski, Ireneusz; Remon, Laura; Pascual, Daniel; Wojtkowski, Maciej; Marcos, Susana

    2010-02-01

    A method for three-dimensional 3-D optical distortion (refraction) correction on anterior segment Optical Coherence Tomography (OCT) images has been developed. The method consists of 3-D ray tracing through the different surfaces, following denoising, segmentation of the surfaces, Delaunay representation of the surfaces, and application of fan distortion correction. The correction has been applied theoretically to realistic computer eye models, and experimentally to OCT images of: an artificial eye with a Polymethyl Methacrylate (PMMA) cornea and an intraocular lens (IOL), an enucleated porcine eye, and a human eye in vivo obtained from two OCT laboratory set-ups (time domain and spectral). Data are analyzed in terms of surface radii of curvature and asphericity. Comparisons are established between the reference values for the surfaces (nominal values in the computer model; non-contact profilometric measurements for the artificial eye; Scheimpflug imaging for the real eyes in vivo and vitro). The results from the OCT data were analyzed following the conventional approach of dividing the optical path by the refractive index, after application of 2-D optical correction, and 3-D optical correction (in all cases after fan distortion correction). The application of 3-D optical distortion correction increased significantly both the accuracy of the radius of curvature estimates and particularly asphericity of the surfaces, with respect to conventional methods of OCT image analysis. We found that the discrepancies of the radii of curvature estimates from 3-D optical distortion corrected OCT images are less than 1% with respect to nominal values. Optical distortion correction in 3-D is critical for quantitative analysis of OCT anterior segment imaging, and allows accurate topography of the internal surfaces of the eye. PMID:20174107

  3. Fluorescence diffuse tomography technique with autofluorescence removal based on dispersion of biotissue optical properties

    International Nuclear Information System (INIS)

    The dispersion of biotissue optical properties results in distortion of the spectrum of radiation during propagation through biotissues. This phenomenon can be used for solving the inverse problem in fluorescence diffuse tomography. We have developed the spectrally resolved fluorescence diffuse tomography (SFDT) technique, which allows reconstruction of the spatial distribution of the fluorophore in biotissue even in the presence of unknown autofluorescence. The experimental setup combining epi-illumination and trans-illumination imaging geometries with spectral resolution has been created. Experimental studies on tissue phantoms and small animals in vivo with the proposed SFDT technique have been conducted. The obtained results have shown high accuracy of the inverse problem solution for spatial distribution of fluorophore concentration. (letter)

  4. Three-dimensional emission tomography of optically thick plasma for known absorption

    International Nuclear Information System (INIS)

    Three-dimensional emission tomography of plasma partially absorbing its own radiation is considered in the assumption that distribution od local absorption coefficients is known. To solve the problem relating to determination of emission local coefficients distribution under the given conditions it is suggested that algebraic algorithms are used to convert projecting matrix plotted with regard for absorption. Moreover, new algorithms NDAT and NDFBP based on expansion into a Neumann series of the product of radiation transfer operator in an absorbing medium and emission problem solution operator of transparent plasma tomography, are developed. In numerical simulation it is shown that emission filed can be restored with acceptable accuracy up to optical thickness 6-8

  5. Identification of prefrontal cortex (BA10) activation while performing Stroop test using diffuse optical tomography

    Science.gov (United States)

    Khadka, Sabin; Chityala, Srujan R.; Tian, Fenghua; Liu, Hanli

    2011-03-01

    Stroop test is commonly used as a behavior-testing tool for psychological examinations that are related to attention and cognitive control of the human brain. Studies have shown activations in Broadmann area 10 (BA10) of prefrontal cortex (PFC) during attention and cognitive process. The use of diffuse optical tomography (DOT) for human brain mapping is becoming more prevalent. In this study we expect to find neural correlates between the performed cognitive tasks and hemodynamic signals detected by a DOT system. Our initial observation showed activation of oxy-hemoglobin concentration in BA 10, which is consistent with some results seen by positron emission tomography (PET) and functional magnetic resonance imaging (fMRI). Our study demonstrates the possibility of combining DOT with Stroop test to quantitatively investigate cognitive functions of the human brain at the prefrontal cortex.

  6. Spontaneous Coronary Dissection: “Live Flash” Optical Coherence Tomography Guided Angioplasty

    Science.gov (United States)

    Bento, Angela Pimenta; Fernandes, Renato Gil dos Santos Pinto; Neves, David Cintra Henriques Silva; Patrício, Lino Manuel Ribeiro; de Aguiar, José Eduardo Chambel

    2016-01-01

    Optical Coherence tomography (OCT) is a light-based imaging modality which shows tremendous potential in the setting of coronary imaging. Spontaneous coronary artery dissection (SCAD) is an infrequent cause of acute coronary syndrome (ACS). The diagnosis of SCAD is made mainly with invasive coronary angiography, although adjunctive imaging modalities such as computed tomography angiography, IVUS, and OCT may increase the diagnostic yield. The authors describe a clinical case of a young woman admitted with the diagnosis of ACS. The ACS was caused by SCAD detected in the coronary angiography and the angioplasty was guided by OCT. OCT use in the setting of SCAD has been already described and the true innovation in this case was this unique use of OCT. The guidance of angioplasty with live and short images was very useful as it allowed clearly identifying the position of the guidewires at any given moment without the use of prohibitive amounts of contrast.

  7. Optical diffraction tomography using a digital micromirror device for stable measurements of 4-D refractive index tomography of cells

    CERN Document Server

    Shin, Seungwoo; Kim, Taeho; Yoon, Jonghee; Hong, Kihyun; Park, Jinah; Park, YongKeun

    2016-01-01

    Optical diffraction tomography (ODT) is an interferometric microscopy technique capable of measuring 3-D refractive index (RI) distribution of transparent samples. Multiple 2-D holograms of a sample illuminated with various angles are measured, from which 3-D RI map of the sample is reconstructed via the diffraction theory. ODT has been proved as a powerful tool for the study of biological cells, due to its non-invasiveness, label-free and quantitative imaging capability. Recently, our group has demonstrated that a digital micromirror device (DMD) can be exploited for fast and precise control of illumination beams for ODT. In this work, we systematically study the precision and stability of the ODT system equipped with a DMD and present measurements of 3-D and 4-D RI maps of various types of live cells including human red blood cells, white blood cells, hepatocytes, and HeLa cells. Furthermore, we also demonstrate the effective visualization of 3-D RI maps of live cells utilizing the measured information abou...

  8. All-optically integrated photo-acoustic microscopy and optical coherence tomography based on a single Michelson detector.

    Science.gov (United States)

    Chen, Zhongjiang; Yang, Sihua; Wang, Yi; Xing, Da

    2015-06-15

    An all-optically noncontact dual-mode imaging system using a single Michelson detector that simultaneously achieved photo-acoustic microscopy (PAM) and optical coherence tomography (OCT) is presented. The pulse laser-induced photo-acoustic signals and the back-scattered photons were alternately detected by a single Michelson detector. The spatial resolution and imaging capability of the dual-mode imaging system were testified by scattering phantoms. Furthermore, in vivo images of the mouse ear demonstrated that the PAM-OCT can provide complementary anatomical and functional information for imaging of biological tissues, which could be the best co-imaging strategy of PAM and OCT in biomedicine. PMID:26076275

  9. Noninvasive monitoring of photodynamic therapy on skin neoplastic lesions using the optical attenuation coefficient measured by optical coherence tomography

    Science.gov (United States)

    Goulart, Viviane P.; dos Santos, Moisés O.; Latrive, Anne; Freitas, Anderson Z.; Correa, Luciana; Zezell, Denise M.

    2015-05-01

    Photodynamic therapy (PDT) has become a promising alternative for treatment of skin lesions such as squamous cell carcinoma. We propose a method to monitor the effects of PDT in a noninvasive way by using the optical attenuation coefficient (OAC) calculated from optical coherence tomography (OCT) images. We conducted a study on mice with chemically induced neoplastic lesions and performed PDT on these lesions using homemade photosensitizers. The response of neoplastic lesions to therapy was monitored using, at the same time, macroscopic clinical visualization, histopathological analysis, OCT imaging, and OCT-based attenuation coefficient measurement. Results with all four modalities demonstrated a positive response to treatment. The attenuation coefficient was found to be 1.4 higher in skin lesions than in healthy tissue and it decreased after therapy. This study shows that the OAC is a potential tool to noninvasively assess the evolution of skin neoplastic lesions with time after treatment.

  10. Tri-band spectroscopic optical coherence tomography based on optical parametric amplification for lipid and vessel visualization

    Science.gov (United States)

    Yu, Luoqin; Kang, Jiqiang; Jinata, Chandra; Wang, Xie; Wei, Xiaoming; Chan, Kin Tak; Lee, Nikki P.; Wong, Kenneth K. Y.

    2015-12-01

    A tri-band spectroscopic optical coherence tomography (SOCT) system has been implemented for visualization of lipid and blood vessel distribution. The tri-band swept source, which covers output spectrum in 1.3, 1.5, and 1.6 ?m wavelength windows, is based on a dual-band Fourier domain mode-locked laser and a fiber optical parametric amplifier. This tri-band SOCT can further differentiate materials, e.g., lipid and artery, qualitatively by contrasting attenuation coefficients difference within any two of these bands. Furthermore, ex vivo imaging of both porcine artery with artificial lipid plaque phantom and mice with coronary artery disease were demonstrated to showcase the capability of our SOCT.

  11. Design of optical internal signalling based optical sensor for encroaching mental tomography

    Directory of Open Access Journals (Sweden)

    Anoop Tiwari,

    2011-03-01

    Full Text Available Brain tomography is most popular technique, and has been helpful for the study of interior picturing of the body. We are going to present an fibre based integrated device consisting of interleaved arrays of gallium arsenide (GaAs , light sources and detectors operating at electro communications wavelengths(850-1300nm in the near-infrared. Such a device will allow for long-term, minimally encroaching monitoring of neural activity in freely behaving subjects, and will enable the use of structured illumination patterns to improve system performance. We evaluate the recognized accomplishment of a current commercial OIS tomography, with a proposed fibre based prototype sensor. I have also improved the temporal resolution of technique in order to observe faster hemodynamic phenomena. Also have show that near-infrared OIS imaging at wavelengths compatible with produce physiologically significant images in mice, even through skull.

  12. Experimental study of z resolution in acousto-optical coherence tomography using random phase jumps on ultrasound and light

    CERN Document Server

    Lesaffre, Max; Ramaz, François; Gross, Michel; 10.1364/AO.52.000949

    2013-01-01

    Acousto-Optical Coherence Tomography (AOCT) is a variant of Acousto Optic Imaging (also called Ultrasound modulated Optical Tomography) that makes possible to get resolution along the ultrasound propagation axis $z$. We present here new AOCT experimental results, and we study how the $z$ resolution depends on time step between phase jumps $T_\\phi$, or on the correlation length $\\Delta z$. By working at low resolution, we perform a quantitative comparison of the $z$ measurements with the theoretical Point Spread Function (PSF). We present also images recorded with different $z$ resolution, and we qualitatively show how the image quality varies with $T_\\phi$, or $\\Delta z$.

  13. Quantification of biofilm thickness using a swept source based optical coherence tomography system

    Science.gov (United States)

    Ratheesh Kumar, M.; Murukeshan, V. M.; Seah, L. K.; Shearwood, C.

    2015-07-01

    Optical coherence tomography (OCT) is a non-invasive, non-contact optical measurement and imaging technique that relies on low coherence interferometry. Apart from bio-imaging applications, the applicability of OCT can be extended to metrological investigations because of the inherent capability of optical interferometry to perform precise measurement with high sensitivity. In this paper, we demonstrate the feasibility of OCT for the measurement of the refractive index and thickness of bacterial biofilm structures grown in a flow cell. In OCT, the depth profiles are constructed by measuring the magnitude and time delay of back reflected light from the scattering sites by means of optical interferometry. The optical distance between scattering points can be obtained by measuring the separation between the point spread functions (PSF) at the respective points in the A-scan data. The refractive index of the biofilm is calculated by measuring the apparent shift in the position of the PSF corresponding to a reference surface, caused by the biofilm growth. In our experiment, the base layer of the flow cell is used as the reference surface. It is observed that the calculated refractive index of the biofilm is close to that of water, and agrees well with the previously reported value. Finally, the physical thickness of the biofilm is calculated by dividing the optical path length by the calculated value of refractive index.

  14. Tomography

    International Nuclear Information System (INIS)

    Tomography images of a body are constructed by placing a plurality of surface electrodes at spaced intervals on the body, causing currents to flow in the body (e.g. by applying a potential between each pair of electrodes in turn, or by induction), and measuring the potential between pairs of electrodes, calculating the potential expected in each case on the assumption that the body consists of a medium of uniform impedance, plotting the isopotentials corresponding to the calculated results to create a uniform image of the body, obtaining the ratio between the measured potential and the calculated potential in each case, and modifying the image in accordance with the respective ratios by increasing the assumed impedance along an isopotential in proportion to a ratio greater than unity or decreasing the assumed impedance in proportion to a ratio less than unity. The modified impedances along the isopotentials for each pair of electrodes are superimposed. The calculations are carried out using a computer and the plotting is carried out by a visual display unit and/or a print-out unit. (author)

  15. Study of continuous-wave domain fluorescence diffuse optical tomography for quality control on agricultural produce

    Science.gov (United States)

    Nadhira, Vebi; Kurniadi, Deddy; Juliastuti, E.; Sutiswan, Adeline

    2014-03-01

    The importance of monitoring the quality of vegetables and fruits is prosperity by giving a competitive advantage for producer and providing a more healthy food for consumer. Diffuse Optical Tomography (DOT) is offering the possibility to detect the internal defects of the agricultural produce quality. Fluorescence diffuse optical tomography (FDOT) is the development of DOT, offering the possibilities to improve spatial resolution and to contrast image. The purpose of this research is to compare FDOT and DOT in forward analysis with continuous wave approach. The scattering and absorbing parameters of potatoes are used to represent the real condition. The object was illuminated by the NIR source from some positions on the boundary of object. A set of NIR detector are placed on the peripheral position of the object to measure the intensity of propagated or emitted light. In the simulation, we varied a condition of object then we analyzed the sensitivity of forward problem. The result of this study shows that FDOT has a better sensitivity than DOT and a better potential to monitor internal defects of agricultural produce because of the contrast value between optical and fluorescence properties of agricultural produce normal tissue and defects.

  16. Study of continuous-wave domain fluorescence diffuse optical tomography for quality control on agricultural produce

    Energy Technology Data Exchange (ETDEWEB)

    Nadhira, Vebi, E-mail: vebi@tf.itb.ac.id; Kurniadi, Deddy, E-mail: vebi@tf.itb.ac.id; Juliastuti, E., E-mail: vebi@tf.itb.ac.id; Sutiswan, Adeline, E-mail: vebi@tf.itb.ac.id [Instrumentation and Control Research Group, Faculty of Industrial Technology, Institute Technology of Bandung, Ganesha 10 40132 Bandung (Indonesia)

    2014-03-24

    The importance of monitoring the quality of vegetables and fruits is prosperity by giving a competitive advantage for producer and providing a more healthy food for consumer. Diffuse Optical Tomography (DOT) is offering the possibility to detect the internal defects of the agricultural produce quality. Fluorescence diffuse optical tomography (FDOT) is the development of DOT, offering the possibilities to improve spatial resolution and to contrast image. The purpose of this research is to compare FDOT and DOT in forward analysis with continuous wave approach. The scattering and absorbing parameters of potatoes are used to represent the real condition. The object was illuminated by the NIR source from some positions on the boundary of object. A set of NIR detector are placed on the peripheral position of the object to measure the intensity of propagated or emitted light. In the simulation, we varied a condition of object then we analyzed the sensitivity of forward problem. The result of this study shows that FDOT has a better sensitivity than DOT and a better potential to monitor internal defects of agricultural produce because of the contrast value between optical and fluorescence properties of agricultural produce normal tissue and defects.

  17. Endoscopic optical coherence tomography with a modified microelectromechanical systems mirror for detection of bladder cancers

    Science.gov (United States)

    Xie, Tuqiang; Xie, Huikai; Fedder, Gary K.; Pan, Yingtian

    2003-11-01

    Experimental results of a modified micromachined microelectromechanical systems (MEMS) mirror for substantial enhancement of the transverse laser scanning performance of endoscopic optical coherence tomography (EOCT) are presented. Image distortion due to buckling of MEMS mirror in our previous designs was analyzed and found to be attributed to excessive internal stress of the transverse bimorph meshes. The modified MEMS mirror completely eliminates bimorph stress and the resultant buckling effect, which increases the wobbling-free angular optical actuation to greater than 37°, exceeding the transverse laser scanning requirements for EOCT and confocal endoscopy. The new optical coherence tomography (OCT) endoscope allows for two-dimensional cross-sectional imaging that covers an area of 4.2 mm × 2.8 mm (limited by scope size) and at roughly 5 frames/s instead of the previous area size of 2.9 mm × 2.8 mm and is highly suitable for noninvasive and high-resolution imaging diagnosis of epithelial lesions in vivo. EOCT images of normal rat bladders and rat bladder cancers are compared with the same cross sections acquired with conventional bench-top OCT. The results clearly demonstrate the potential of EOCT for in vivo imaging diagnosis and precise guidance for excisional biopsy of early bladder cancers.

  18. Reconstruction methods for sound visualization based on acousto-optic tomography

    DEFF Research Database (Denmark)

    Torras Rosell, Antoni; Lylloff, Oliver

    2013-01-01

    The visualization of acoustic fields using acousto-optic tomography has recently proved to yield satisfactory results in the audible frequency range. The current implementation of this visualization technique uses a laser Doppler vibrometer (LDV) to measure the acousto-optic effect, that is, the interaction between sound and light, over an aperture where the acoustic field is to be investigated. By identifying the relationship between the apparent velocity of the LDV and the Radon transform of the acoustic field, it is possible to reconstruct the sound pressure distribution of the scanned area using tomographic techniques. The filtered back projection (FBP) method is the most popular reconstruction algorithm used for tomography in many fields of science. The present study takes the performance of the FBP method in sound visualization as a reference and investigates the use of alternative methods commonly used in inverse problems, e.g., the singular value decomposition and the conjugate gradient methods. A generic formulation for describing the acousto-optic measurement as an inverse problem is thus derived, and the performance of the numerical methods is assessed by means of simulations and experimental results.

  19. Optical tomography for concentration and velocity profiles in two component flows

    Science.gov (United States)

    Ibrahim, Sallehuddin; Green, Robert G.; Dutton, Ken

    2000-08-01

    Optical tomography involves the use of non-invasive optical sensors to obtain information in order to produce images of the dynamic internal characteristics of process systems. This paper presents an investigation using optical tomography suitable for determining concentration and velocity profiles in two component flows in a fluid conveying pipe. The system is capable of detecting and measuring the amount of undissolved gas in waster, or gas in oil, where the mixture is flowing in a pipe. The system employs four projections consisting of a combination of two orthogonal and two rectilinear projections. The light transmitters consists of four halogen bulbs. Each orthogonal receiver projection employs 8 sensors and each rectilinear receiver projection uses 11 sensors making a total of 38 receiver sensors. The voltage profile from the sensors gives spatial information of the flow regime. Signal processing provides time-averaged signals which will generate peripheral concentration profiles. To observe the velocity profile via cross- correlation, a second identical measurement system has been constructed. One array of sensors is positioned upstream and the other downstream in the process measurement. Cross-correlograms provide mean velocities of velocity profiles over the measurement section.

  20. Radiofrequency circuit design and performance evaluation for small animal frequency-domain NIR fluorescence optical tomography

    Science.gov (United States)

    Darne, Chinmay; Zhu, Banghe; Lu, Yujie; Tan, I.-Chih; Rasmussen, John; Sevick-Muraca, Eva M.

    2011-02-01

    Herein we report on hardware development and evaluation for frequency-domain photon migration (FDPM) technique that is miniaturized for incorporation into a micro-CT gantry for hybrid CT/NIR/PET imaging. Immunity to endogenous optical properties and enhanced contrast associated with fluorophore lifetime is inherent to the FDPM measurements and enables unique opportunities for quantitative tomography when compared to the time independent (continuous wave) approach. A miniaturized radiofrequency (rf) circuitry has been developed in our laboratory for homodyne FDPM measurements that makes use of a single 100MHz oscillator to simultaneously launch optically modulated excitation light into a small animal as well as to modulate an NIR sensitive image intensifier for collection of fluorescent signals. The use of a single oscillator not only eliminates signal drift that otherwise results from the use of multiple oscillators individually driving both source and detector, but also reduces the circuit footprint for incorporation into the CT gantry. Herein, overall system performance parameters of signal-to-noise ratio, measurement precision, spatial resolution, modulation depth (ac/dc), excitation light rejection, and clinically relevant data acquisition times are presented for mouse phantom data. Image reconstruction of phantom data and integration of circuitry for hybrid CT/NIR/PET imaging is also presented towards the ultimate validation of NIR optical tomography using PET imaging as a "gold-standard" for quantification.