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Sample records for intermolecular interaction energies

  1. The calculation of intermolecular interaction energies.

    Czech Academy of Sciences Publication Activity Database

    Hobza, Pavel

    2011-01-01

    Ro?. 107, - (2011), s. 148-168. ISSN 0260-1826 R&D Projects: GA MŠk LC512 Institutional research plan: CEZ:AV0Z40550506 Keywords : interaction energy * benchmark data * CCSD(T)/complete basis set Subject RIV: CF - Physical ; Theoretical Chemistry

  2. The same number of optimized parameters scheme for determining intermolecular interaction energies

    DEFF Research Database (Denmark)

    Kristensen, Kasper; Ettenhuber, Patrick

    2015-01-01

    We propose the Same Number Of Optimized Parameters (SNOOP) scheme as an alternative to the counterpoise method for treating basis set superposition errors in calculations of intermolecular interaction energies. The key point of the SNOOP scheme is to enforce that the number of optimized wave function parameters for the noninteracting system is the same as for the interacting system. This ensures a delicate balance between the quality of the monomer and dimer finite basis set calculations. We compare the SNOOP scheme to the uncorrected and counterpoise schemes theoretically as well as numerically. Numerical results for second-order Møller-Plesset perturbation theory (MP2) and coupled-cluster with single, double, and approximate triple excitations (CCSD(T)) show that the SNOOP scheme in general outperforms the uncorrected and counterpoise approaches. Furthermore, we show that SNOOP interaction energies calculated using a given basis set are of similar quality as those determined by basis set extrapolation of counterpoise-corrected results obtained at a similar computational cost.

  3. Specific intermolecular interactions of organic compounds

    CERN Document Server

    Baev, Alexei K

    2012-01-01

    This volume sets out the development of the thermodynamic theory of specific intermolecular interactions for a wide spectrum of organic compounds, laying down the framework of an unconventional approach to H-bonding based on a pentacoordinate carbon atom.

  4. Intermolecular Sulfur···Oxygen Interactions: Theoretical and Statistical Investigations.

    Science.gov (United States)

    Zhang, Xuejin; Gong, Zhen; Li, Jian; Lu, Tao

    2015-10-26

    Intermolecular S···O interactions are very common and are important in biological systems, but until recently, the presence of these contacts in protein-ligand systems largely depended on serendipitous discovery instead of rational design. Here we provide insight into the phenomenon of intermolecular S···O contacts by focusing on three sulfur-containing aromatic rings. Quantum mechanics is employed to characterize the strength and directionality of the S···O interactions and to determine their energy dependence on their geometric parameters. Protein Data Bank mining is performed to systematically determine the occurrence and geometry of intermolecular S···O interactions, and several representative examples are discussed. Three typical cases are investigated using a combined quantum mechanics/molecular mechanics approach to demonstrate the potential of these interactions in improving binding affinities and physiochemical properties. Overall, our work elucidates the structures and energy features of intermolecular S···O interactions and addresses their use in molecular design. PMID:26393532

  5. Accurate Intermolecular Interaction Energies from a Combination of MP2 and TDDFT Response Theory.

    Czech Academy of Sciences Publication Activity Database

    Pito?ák, Michal; Hesselmann, A.

    2010-01-01

    Ro?. 6, ?. 1 (2010), s. 168-178. ISSN 1549-9618 R&D Projects: GA MŠk LC512 Grant ostatní: VEGA(SK) 1/0428/09 Institutional research plan: CEZ:AV0Z40550506 Keywords : dispersion energy * TDDFT * noncovalent interactions Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 5.138, year: 2010

  6. Explicitly correlated intermolecular distances and interaction energies of hydrogen bonded complexes

    DEFF Research Database (Denmark)

    Lane, Joseph R; Kjærgaard, Henrik G

    2009-01-01

    We have optimized the lowest energy structures and calculated interaction energies for the H(2)O-H(2)O, H(2)O-H(2)S, H(2)O-NH(3), and H(2)O-PH(3) dimers with the recently developed explicitly correlated CCSD(T)-F12 methods and the associated VXZ-F12 (where X = D,T,Q) basis sets. For a given cardinal number, we find that the results obtained with the CCSD(T)-F12 methods are much closer to the CCSD(T) complete basis set limit than the conventional CCSD(T) results. In general we find that CCSD(T)-F...

  7. Intermolecular electrostatic energies using density fitting.

    Science.gov (United States)

    Cisneros, G Andrés; Piquemal, Jean-Philip; Darden, Thomas A

    2005-07-22

    A method is presented to calculate the electron-electron and nuclear-electron intermolecular Coulomb interaction energy between two molecules by separately fitting the unperturbed molecular electron density of each monomer. This method is based on the variational Coulomb fitting method which relies on the expansion of the ab initio molecular electron density in site-centered auxiliary basis sets. By expanding the electron density of each monomer in this way the integral expressions for the intermolecular electrostatic calculations are simplified, lowering the operation count as well as the memory usage. Furthermore, this method allows the calculation of intermolecular Coulomb interactions with any level of theory from which a one-electron density matrix can be obtained. Our implementation is initially tested by calculating molecular properties with the density fitting method using three different auxiliary basis sets and comparing them to results obtained from ab initio calculations. These properties include dipoles for a series of molecules, as well as the molecular electrostatic potential and electric field for water. Subsequently, the intermolecular electrostatic energy is tested by calculating ten stationary points on the water dimer potential-energy surface. Results are presented for electron densities obtained at four different levels of theory using two different basis sets, fitted with three auxiliary basis sets. Additionally, a one-dimensional electrostatic energy surface scan is performed for four different systems (H2O dimer, Mg2+-H2O, Cu+-H2O, and n-methyl-formamide dimer). Our results show a very good agreement with ab initio calculations for all properties as well as interaction energies. PMID:16095348

  8. Probing intermolecular protein-protein interactions in the calcium-sensing receptor homodimer using bioluminescence resonance energy transfer (BRET)

    DEFF Research Database (Denmark)

    Jensen, Anders A.; Hansen, Jakob L; Sheikh, Søren P; Bräuner-Osborne, Hans

    2002-01-01

    -induced intermolecular movements in the CaR homodimer using the new bioluminescence resonance energy transfer technique, BRET2, which is based on the transference of energy from Renilla luciferase (Rluc) to the green fluorescent protein mutant GFP2. We tagged CaR with Rluc and GFP2 at different intracellular locations...

  9. Intermolecular Interaction Energies in Molecular Crystals: Comparison and Agreement of Localized Moller-Plesset 2, Dispersion-Corrected Density Functional, and Classical Empirical Two-Body Calculations

    OpenAIRE

    UGLIENGO, Piero; Civalleri, Bartolomeo; Maschio, Lorenzo

    2011-01-01

    A comparative analysis of the intermolecular energy for a data set including 60 molecular crystals with a large variety of functional groups has been carried out using three different computational approaches: (i) a method based on a physically meaningful empirical partition of the interaction energy (PIXEL), (ii) density functional methods with a posteriori empirical correction for the dispersion interactions (DFT-D), and (iii) a full periodic ab initio quantum mechanical method based on Mol...

  10. Bowl inversion state controlled by intermolecular interactions

    International Nuclear Information System (INIS)

    Full text: Bowl-shaped pi-conjugated compounds are important not only as model compounds of fullerenes but also as possible hosts for different guest molecules. Recent studies regarding the storage of possible energy carriers such as hydrogen and methane in nano-structured carbon materials have further increased the interest in well defined model compounds that allow for a detailed investigation of host-guest interactions in order to optimize the storage capacity of technologically relevant carbon-based materials. Within this context we investigated the structural properties of monolayer films of sumanene (C21H12) deposited on Ag(111). Based on STM experiments we find that the fraction of molecules having a bowl-down adsorption geometry is coverage-dependent, indicating that the bowl-inversion state is determined by intermolecular interactions. The experimental findings are rationalized by density functional theory (DFT) calculations, which reveal a subtle interplay between molecule-substrate and molecule- molecule interactions that is responsible for the abrupt structural change involving inversion of a fraction of the molecules and reorientation of the molecules with respect to the surface normal. (author)

  11. Model calculations of intermolecular interactions in the lowest energy Rydberg state of ammonia

    International Nuclear Information System (INIS)

    Ab initio calculations on the triplet n3S Rydberg state of ammonia and the ammonia + two hydrogen molecule encounter complex indicate that contrary to expectations the system undergoes increasing rydbergization without great energy cost at close approaches. (orig.)

  12. Intermolecular Interactions of Noble-Gas-Containing Species

    OpenAIRE

    Lignell, Antti

    2008-01-01

    The importance of intermolecular interactions to chemistry, physics, and biology is difficult to overestimate. Without intermolecular forces, condensed phase matter could not form. The simplest way to categorize different types of intermolecular interactions is to describe them using van der Waals and hydrogen bonded (H-bonded) interactions. In the H-bond, the intermolecular interaction appears between a positively charged hydrogen atom and electronegative fragments and it originates from str...

  13. Probing intermolecular protein-protein interactions in the calcium-sensing receptor homodimer using bioluminescence resonance energy transfer (BRET)

    DEFF Research Database (Denmark)

    Jensen, Anders A.; Hansen, Jakob L

    2002-01-01

    The calcium-sensing receptor (CaR) belongs to family C of the G-protein coupled receptor superfamily. The receptor is believed to exist as a homodimer due to covalent and non-covalent interactions between the two amino terminal domains (ATDs). It is well established that agonist binding to family C receptors takes place at the ATD and that this causes the ATD dimer to twist. However, very little is known about the translation of the ATD dimer twist into G-protein coupling to the 7 transmembrane moieties (7TMs) of these receptor dimers. In this study we have attempted to delineate the agonist-induced intermolecular movements in the CaR homodimer using the new bioluminescence resonance energy transfer technique, BRET2, which is based on the transference of energy from Renilla luciferase (Rluc) to the green fluorescent protein mutant GFP2. We tagged CaR with Rluc and GFP2 at different intracellular locations. Stable and highly receptor-specific BRET signals were obtained in tsA cells transfected with Rluc- and GFP2-tagged CaRs under basal conditions, indicating that CaR is constitutively dimerized. However, the signals were not enhanced by the presence of agonist. These results could indicate that at least parts of the two 7TMs of the CaR homodimer are in close proximity in the inactivated state of the receptor and do not move much relative to one another upon agonist activation. However, we cannot exclude the possibility that the BRET technology is unable to register putative conformational changes in the CaR homodimer induced by agonist binding because of the bulk sizes of the Rluc and GFP2 molecules.

  14. He-, Ne-, and Ar-phosgene intermolecular potential energy surfaces

    DEFF Research Database (Denmark)

    Munteanu, Cristian R.; Henriksen, Christian; Felker, Peter M.; Ferna?ndez, Berta

    2013-01-01

    Using the CCSD(T) model, we evaluated the intermolecular potential energy surfaces of the He-, Ne-, and Ar-phosgene complexes. We considered a representative number of intermolecular geometries for which we calculated the corresponding interaction energies with the augmented (He complex) and double augmented (Ne and Ar complexes) correlation-consistent polarized valence triple-? basis sets extended with a set of 3s3p2d1f1g midbond functions. These basis sets were selected after systematic basis ...

  15. Specific intermolecular interactions of element-organic compounds

    CERN Document Server

    Baev, Alexei K

    2014-01-01

    This book extends the development of the thermodynamic theory of specific intermolecular interactions to element-organic and specific organometallic compounds. The fundamentals of an unconventional approach to the theory of H-bonding and specific interactions are formulated, based on a concept of pentacoordinate carbon atoms. Prof. Baev has introduced the theory already in his successful books ""Specific Intermolecular Interactions of Organic Compounds"" and ""Specific Intermolecular Interactions of Nitrogenated and Bioorganic Compounds"". In this book he also demonstrates it for element organ

  16. Quantitative analysis of intermolecular interactions in orthorhombic rubrene.

    Science.gov (United States)

    Hathwar, Venkatesha R; Sist, Mattia; Jørgensen, Mads R V; Mamakhel, Aref H; Wang, Xiaoping; Hoffmann, Christina M; Sugimoto, Kunihisa; Overgaard, Jacob; Iversen, Bo Brummerstedt

    2015-09-01

    Rubrene is one of the most studied organic semiconductors to date due to its high charge carrier mobility which makes it a potentially applicable compound in modern electronic devices. Previous electronic device characterizations and first principles theoretical calculations assigned the semiconducting properties of rubrene to the presence of a large overlap of the extended ?-conjugated core between molecules. We present here the electron density distribution in rubrene at 20?K and at 100?K obtained using a combination of high-resolution X-ray and neutron diffraction data. The topology of the electron density and energies of intermolecular interactions are studied quantitatively. Specifically, the presence of C??C? interactions between neighbouring tetracene backbones of the rubrene molecules is experimentally confirmed from a topological analysis of the electron density, Non-Covalent Interaction (NCI) analysis and the calculated interaction energy of molecular dimers. A significant contribution to the lattice energy of the crystal is provided by H-H interactions. The electron density features of H-H bonding, and the interaction energy of molecular dimers connected by H-H interaction clearly demonstrate an importance of these weak interactions in the stabilization of the crystal structure. The quantitative nature of the intermolecular interactions is virtually unchanged between 20?K and 100?K suggesting that any changes in carrier transport at these low temperatures would have a different origin. The obtained experimental results are further supported by theoretical calculations. PMID:26306198

  17. Quantitative analysis of intermolecular interactions in orthorhombic rubrene

    Directory of Open Access Journals (Sweden)

    Venkatesha R. Hathwar

    2015-09-01

    Full Text Available Rubrene is one of the most studied organic semiconductors to date due to its high charge carrier mobility which makes it a potentially applicable compound in modern electronic devices. Previous electronic device characterizations and first principles theoretical calculations assigned the semiconducting properties of rubrene to the presence of a large overlap of the extended ?-conjugated core between molecules. We present here the electron density distribution in rubrene at 20?K and at 100?K obtained using a combination of high-resolution X-ray and neutron diffraction data. The topology of the electron density and energies of intermolecular interactions are studied quantitatively. Specifically, the presence of C?...C? interactions between neighbouring tetracene backbones of the rubrene molecules is experimentally confirmed from a topological analysis of the electron density, Non-Covalent Interaction (NCI analysis and the calculated interaction energy of molecular dimers. A significant contribution to the lattice energy of the crystal is provided by H—H interactions. The electron density features of H—H bonding, and the interaction energy of molecular dimers connected by H—H interaction clearly demonstrate an importance of these weak interactions in the stabilization of the crystal structure. The quantitative nature of the intermolecular interactions is virtually unchanged between 20?K and 100?K suggesting that any changes in carrier transport at these low temperatures would have a different origin. The obtained experimental results are further supported by theoretical calculations.

  18. Density matrix based microscopic theory of molecule metal-nanoparticle interactions: linear absorbance and plasmon enhancement of intermolecular excitation energy transfer.

    Science.gov (United States)

    Kyas, Gerold; May, Volkhard

    2011-01-21

    A microscopic theory of interacting molecule metal-nanoparticle (MNP) systems is presented and used to compute absorption spectra and the plasmon enhancement of intermolecular excitation energy transfer (EET). The approach is based on a nonperturbative consideration of the Coulomb coupling matrix elements responsible for EET between the molecules and the MNP. In this way, the need to determine the local fields induced by surface plasmon excitations of the MNP is removed, but the whole description is restricted to distances among the interacting species less than the wavelength of absorbed photons. Based on a density matrix theory, the approach accounts for the vibrational level structure of the molecules, intramolecular vibrational energy redistribution (IVR), and plasmon damping. Numerical results for linear absorbance spectra and EET dynamics are offered. In this respect the importance of energy dissipation in the MNP due to rapid surface plasmon decay is emphasized. PMID:21261378

  19. Density matrix based microscopic theory of molecule metal-nanoparticle interactions: Linear absorbance and plasmon enhancement of intermolecular excitation energy transfer

    Science.gov (United States)

    Kyas, Gerold; May, Volkhard

    2011-01-01

    A microscopic theory of interacting molecule metal-nanoparticle (MNP) systems is presented and used to compute absorption spectra and the plasmon enhancement of intermolecular excitation energy transfer (EET). The approach is based on a nonperturbative consideration of the Coulomb coupling matrix elements responsible for EET between the molecules and the MNP. In this way, the need to determine the local fields induced by surface plasmon excitations of the MNP is removed, but the whole description is restricted to distances among the interacting species less than the wavelength of absorbed photons. Based on a density matrix theory, the approach accounts for the vibrational level structure of the molecules, intramolecular vibrational energy redistribution (IVR), and plasmon damping. Numerical results for linear absorbance spectra and EET dynamics are offered. In this respect the importance of energy dissipation in the MNP due to rapid surface plasmon decay is emphasized.

  20. Specific intermolecular interactions of nitrogenated and bioorganic compounds

    CERN Document Server

    Baev, Alexei K

    2013-01-01

    This book describes the development of the thermodynamic theory of specific intermolecular interactions. It details interactions to a wide spectrum of nitrogenated and bioorganic compounds: amino alcohols, amino acids, peptides and urea derivatives.

  1. Defining the contributions of permanent electrostatics, Pauli repulsion, and dispersion in density functional theory calculations of intermolecular interaction energies.

    Science.gov (United States)

    Horn, Paul R; Mao, Yuezhi; Head-Gordon, Martin

    2016-03-21

    In energy decomposition analysis of Kohn-Sham density functional theory calculations, the so-called frozen (or pre-polarization) interaction energy contains contributions from permanent electrostatics, dispersion, and Pauli repulsion. The standard classical approach to separate them suffers from several well-known limitations. We introduce an alternative scheme that employs valid antisymmetric electronic wavefunctions throughout and is based on the identification of individual fragment contributions to the initial supersystem wavefunction as determined by an energetic optimality criterion. The density deformations identified with individual fragments upon formation of the initial supersystem wavefunction are analyzed along with the distance dependence of the new and classical terms for test cases that include the neon dimer, ammonia borane, water-Na(+), water-Cl(-), and the naphthalene dimer. PMID:27004862

  2. Non-covalent intermolecular carbon-carbon interactions in polyynes.

    Science.gov (United States)

    Remya, Karunakaran; Suresh, Cherumuttathu H

    2015-10-28

    Polyynes, the smaller analogues of one dimensional infinite chain carbon allotrope carbyne, have been studied for the type and strength of the intermolecular interactions in their dimer and tetramer complexes using density functional theory. The nature of end group functionalities and the chain length of the polyynes are varied to assess their role in modulating the non-covalent interaction energy. As seen in molecular electrostatic potential analysis, all the polyyne complexes showed a multitude of non-covalent CC interactions, resulting from complementary electrostatic interactions between relatively electron rich formal triple bond region of one monomer and the electron deficient formal single bond region of the other monomer. This type of paired (C[triple bond, length as m-dash]C)(C-C) bonding interaction, also characterized using quantum theory of atoms-in-molecules, increases with increase in the monomer chain length leading to substantial increase in interaction energy (Eint); -1.07 kcal mol(-1) for the acetylene dimer to -45.83 kcal mol(-1) for the 50yne dimer. The magnitude of Eint increases with substitutions at end positions of the polyyne and this effect persists even up to 50 triple bonds, the largest chain length analyzed in this paper. The role of CC interactions in stabilizing the polyyne dimers is also shown by sliding one monomer in a dimer over the other, which resulted in multiple minima with a reduced number of CC interactions and lower values of Eint. Furthermore, strong cooperativity in the CC bond strength in tetramers is observed as the interaction energy per monomer (Em) of the polyyne is 2.5-2.8 times higher compared to that of the dimer in a test set of four tetramers. The huge gain in energy observed in large polyyene dimers and tetramers predicts the formation of polyyne bundles which may find use in the design of new functional molecular materials. PMID:26412713

  3. Intermolecular Interactions in Ternary Glycerol–Sample–H2O

    DEFF Research Database (Denmark)

    Westh, Peter; Rasmussen, Erik Lumby; Koga, Yoshikata

    2011-01-01

    We studied the intermolecular interactions in ternary glycerol (Gly)–sample (S)–H2O systems at 25?°C. By measuring the excess partial molar enthalpy of Gly, HGlyEHEGly, we evaluated the Gly–Gly enthalpic interaction, HGly-GlyEHEGly--Gly, in the presence of various samples (S). For S, tert-butanol...

  4. Learning about Intermolecular Interactions from the Cambridge Structural Database

    Science.gov (United States)

    Battle, Gary M.; Allen, Frank H.

    2012-01-01

    A clear understanding and appreciation of noncovalent interactions, especially hydrogen bonding, are vitally important to students of chemistry and the life sciences, including biochemistry, molecular biology, pharmacology, and medicine. The opportunities afforded by the IsoStar knowledge base of intermolecular interactions to enhance the…

  5. Intermolecular interaction in TeO2 crystal.

    Science.gov (United States)

    Gabuda, Svyatoslav P; Kozlova, Svetlana G

    2006-09-21

    It is shown that the abnormal long-range Te-Te intermolecular interaction in TeO(2) crystals may be related to the tunneling of electrons from the 5s(2) active lone pairs of Te(4+) ions and their partial delocalization on neighboring Te(4+). PMID:16970416

  6. Covalent intermolecular interaction of the nitric oxide dimer (NO)2

    Science.gov (United States)

    Zhang, Hui; Zheng, Gui-Li; Lv, Gang; Geng, Yi-Zhao; Ji, Qing

    2015-09-01

    Covalent bonds arise from the overlap of the electronic clouds in the internucleus region, which is a pure quantum effect and cannot be obtained in any classical way. If the intermolecular interaction is of covalent character, the result from direct applications of classical simulation methods to the molecular system would be questionable. Here, we analyze the special intermolecular interaction between two NO molecules based on quantum chemical calculation. This weak intermolecular interaction, which is of covalent character, is responsible for the formation of the NO dimer, (NO)2, in its most stable conformation, a cis conformation. The natural bond orbital (NBO) analysis gives an intuitive illustration of the formation of the dimer bonding and antibonding orbitals concomitant with the breaking of the ? bonds with bond order 0.5 of the monomers. The dimer bonding is counteracted by partially filling the antibonding dimer orbital and the repulsion between those fully or nearly fully occupied nonbonding dimer orbitals that make the dimer binding rather weak. The direct molecular mechanics (MM) calculation with the UFF force fields predicts a trans conformation as the most stable state, which contradicts the result of quantum mechanics (QM). The lesson from the investigation of this special system is that for the case where intermolecular interaction is of covalent character, a specific modification of the force fields of the molecular simulation method is necessary. Project supported by the National Natural Science Foundation of China (Grant Nos. 90403007 and 10975044), the Key Subject Construction Project of Hebei Provincial Universities, China, the Research Project of Hebei Education Department, China (Grant Nos. Z2012067 and Z2011133), the National Natural Science Foundation of China (Grant No. 11147103), and the Open Project Program of State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, China (Grant No. Y5KF211CJ1).

  7. He-, Ne-, and Ar-phosgene intermolecular potential energy surfaces

    DEFF Research Database (Denmark)

    Munteanu, Cristian R.; Henriksen, Christian

    2013-01-01

    Using the CCSD(T) model, we evaluated the intermolecular potential energy surfaces of the He-, Ne-, and Ar-phosgene complexes. We considered a representative number of intermolecular geometries for which we calculated the corresponding interaction energies with the augmented (He complex) and double augmented (Ne and Ar complexes) correlation-consistent polarized valence triple-? basis sets extended with a set of 3s3p2d1f1g midbond functions. These basis sets were selected after systematic basis set studies carried out at geometries close to those of the surface minima. The He-, Ne-, and Ar-phosgene surfaces were found to have absolute minima of -72.1, -140.4, and -326.6 cm -1 at distances between the rare-gas atom and the phosgene center of mass of 3.184, 3.254, and 3.516 A?, respectively. The potentials were further used in the evaluation of rovibrational states and the rotational constants of the complexes, providing valuable results for future experimental investigations. Comparing our results to those previously available for other phosgene complexes, we suggest that the results for Cl2-phosgene should be revised.

  8. Towards the biaxial nematic phase via specific intermolecular interactions

    International Nuclear Information System (INIS)

    The work described in this thesis has been focussed on the search of an elusive liquid crystal phase, known as the biaxial nematic phase. Indeed, despite nearly thirty years of intense research, no-one has been able to characterise unambiguously a biaxial nematic phase in a low-molar-mass thermotropic system. Our research is based on the concept of molecular biaxiality as distinct from shape biaxiality. Thus, we are seeking to design palladium complexes where specific intermolecular interactions could exist. Therefore, a few original synthetic strategies were developed to tackle the challenge of discovering the biaxial nematic phase

  9. Distinguishability and chiral stability in solution: Effects of decoherence and intermolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Han, Heekyung [Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario M5T 3M7 (Canada); Wardlaw, David M., E-mail: dwardlaw@mun.ca [Department of Chemistry, Memorial University of Newfoundland, St. John' s, Newfoundland and Labrador A1C 5S7 (Canada); Frolov, Alexei M., E-mail: afrolov@uwo.ca [Department of Applied Mathematics, University of Western Ontario, London, Ontario N6H 5B7 (Canada)

    2014-05-28

    We examine the effect of decoherence and intermolecular interactions (chiral discrimination energies) on the chiral stability and the distinguishability of initially pure versus mixed states in an open chiral system. Under a two-level approximation for a system, intermolecular interactions are introduced by a mean-field theory, and interaction between a system and an environment is modeled by a continuous measurement of a population difference between the two chiral states. The resultant equations are explored for various parameters, with emphasis on the combined effects of the initial condition of the system, the chiral discrimination energies, and the decoherence in determining: the distinguishability as measured by a population difference between the initially pure and mixed states, and the decoherence process; the chiral stability as measured by the purity decay; and the stationary state of the system at times long relative to the time scales of the system dynamics and of the environmental effects.

  10. Critical examination of the supermolecule density functional theory calculations of intermolecular interactions

    Science.gov (United States)

    Cybulski, S?awomir M.; Seversen, Christopher E.

    2005-01-01

    The results of calculations employing twelve different combinations of exchange and correlation functionals are compared with results of ab initio calculations for two different configurations of the water dimer and three different configurations of the thymine-adenine complex. None of the density functional theory (DFT) treatments could properly reproduce the results of coupled-cluster calculations for all configurations examined. The DFT approaches perform well when the interaction energy is dominated by the electrostatic component and the dispersion energy is less important. Two mechanisms that compensate for the missing dispersion component were identified. The first one is the decrease of the magnitude of the intermolecular exchange-repulsion and the second one is the increase of the magnitude of the attractive deformation energy. For some functionals both effects are observed together, but for some other ones only the second effect occurs. The three correlation functionals that were examined were found to make only very small contributions to the deformation energy. The examination of angular and distance dependence of the interactions shows that the currently available DFT approaches are not suitable for developing intermolecular potential energy surfaces. They could however be used to find global minima on potential energy surfaces governed by intermolecular electrostatic interactions. Additional single point ab initio calculations are recommended as the means of validating optimized structures.

  11. a General Transformation to Canonical Form for Potentials in Pairwise Intermolecular Interactions

    Science.gov (United States)

    Walton, Jay R.; Rivera-Rivera, Luis A.; Lucchese, Robert R.; Bevan, John W.

    2015-06-01

    A generalized formulation of explicit transformations is introduced to investigate the concept of a canonical potential in both fundamental chemical and intermolecular bonding. Different classes of representative ground electronic state pairwise interatomic interactions are referenced to a single canonical potential illustrating application of explicit transformations. Specifically, accurately determined potentials of the diatomic molecules H_2, H_2^+, HF, LiH, argon dimer, and one-dimensional dissociative coordinates in Ar-HBr, OC-HF, and OC-Cl_2 are investigated throughout their bound potentials. The advantages of the current formulation for accurately evaluating equilibrium dissociation energies and a fundamentally different unified perspective on nature of intermolecular interactions will be emphasized. In particular, this canonical approach has relevance to previous assertions that there is no very fundamental distinction between van der Waals bonding and covalent bonding or for that matter hydrogen and halogen bonds.

  12. Nanophotonic boost of intermolecular energy transfer

    Science.gov (United States)

    de Roque, P. M.; van Hulst, N. F.; Sapienza, R.

    2015-11-01

    We propose a scheme for efficient long-range energy transfer between two distant light emitters separated by more than one wavelength of light, i.e. much beyond the classical Förster radius. A hybrid nanoantenna-waveguide system mediates the transmission of energy, showing enhancements up to 108 as compared to vacuum. Our model shows how energy transfer in nanostructured media can be boosted, beyond the simple donor Purcell enhancement, and in particular for large donor–acceptor separations. The scheme we propose connects realistic emitters and could lead to practical on-chip implementations.

  13. Nanophotonic boost of intermolecular energy transfer

    CERN Document Server

    de Roque, P M; Sapienza, R

    2015-01-01

    We propose a scheme for efficient long-range energy transfer between two distant light emitters separated by more than one wavelength of light, i.e. much beyond the classical Forster radius. A hybrid nanoantenna-waveguide system mediates the transmission of energy, showing enhancements up to 10^8 as compared to vacuum. Our model shows how energy transfer in nanostructured media can be boosted, beyond the simple donor Purcell enhancement, and in particular for large donor-acceptor separations. The scheme we propose connects realistic emitters and could lead to practical on-chip implementations.

  14. Intermolecular Interactions in Ternary Glycerol–Sample–H2O

    DEFF Research Database (Denmark)

    Westh, Peter; Rasmussen, Erik Lumby; Koga, Yoshikata

    2011-01-01

    We studied the intermolecular interactions in ternary glycerol (Gly)–sample (S)–H2O systems at 25?°C. By measuring the excess partial molar enthalpy of Gly, HGlyEHEGly, we evaluated the Gly–Gly enthalpic interaction, HGly-GlyEHEGly--Gly, in the presence of various samples (S). For S, tert...... little effect on HGly-GlyEHEGly--Gly. This contrasts with our earlier studies on 1P–S–H2O in that Na+, F? and Cl? are found as hydration centers from the induced changes on HIP-IPEHEIP--IP in the presence of S, while Br?, I?, and SCN? are found to act as hydrophiles. In comparison with the Hofmeister...... ranking of these ions, the kosmotropes are hydration centers and the more kosmotropic the higher the hydration number, consistent with the original Hofmeister’s concept of “H2O withdrawing power.” Br?, I? and SCN?, on the other hand, acted as hydrophiles and the more chaotropic they are the more...

  15. Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization

    CERN Document Server

    Christensen, Anders S; Cui, Qiang

    2015-01-01

    Semi-empirical quantum mechanical methods traditionally expand the electron density in a minimal, valence-only electron basis set. The minimal-basis approximation causes molecular polarization to be underestimated, and hence intermolecular interaction energies are also underestimated, especially for intermolecular interactions involving charged species. In this work, the third-order self-consistent charge density functional tight-binding method (DFTB3) is augmented with an auxiliary response density using the chemical-potential equalization (CPE) method and an empirical dispersion correction (D3). The parameters in the CPE and D3 models are fitted to high-level CCSD(T) reference interaction energies for a broad range of chemical species, as well as dipole moments calculated at the DFT level; the impact of including polarizabilities of molecules in the parameterization is also considered. Parameters for the elements H, C, N, O and S are presented. The RMSD interaction energy is improved from 6.07 kcal/mol to 1...

  16. Ab initio investigation of intermolecular interactions in solid benzene

    CERN Document Server

    Bludsky, O; Soldan, P; 10.1103/PhysRevB.77.092103

    2009-01-01

    A computational strategy for the evaluation of the crystal lattice constants and cohesive energy of the weakly bound molecular solids is proposed. The strategy is based on the high level ab initio coupled-cluster determination of the pairwise additive contribution to the interaction energy. The zero-point-energy correction and non-additive contributions to the interaction energy are treated using density functional methods. The experimental crystal lattice constants of the solid benzene are reproduced, and the value of 480 meV/molecule is calculated for its cohesive energy.

  17. Intra- and intermolecular energy transfer in highly excited ozone complexes.

    Science.gov (United States)

    Ivanov, Mikhail V; Grebenshchikov, Sergy Yu; Schinke, Reinhard

    2004-06-01

    The energy transfer of highly excited ozone molecules is investigated by means of classical trajectories. Both intramolecular energy redistribution and the intermolecular energy transfer in collisions with argon atoms are considered. The sign and magnitude of the intramolecular energy flow between the vibrational and the rotational degrees of freedom crucially depend on the projection K(a) of the total angular momentum of ozone on the body-fixed a axis. The intermolecular energy transfer in single collisions between O(3) and Ar is dominated by transfer of the rotational energy. In accordance with previous theoretical predictions, the direct vibrational de-excitation is exceedingly small. Vibration-rotation relaxation in multiple Ar+O(3) collisions is also studied. It is found that the relaxation proceeds in two clearly distinguishable steps: (1) During the time between collisions, the vibrational degrees of freedom are "cooled" by transfer of energy to rotation; even at low pressure equilibration of the internal energy is slow compared to the time between collisions. (2) In collisions, mainly the rotational modes are "cool" by energy transfer to argon. PMID:15268022

  18. Determination of stepsize parameters for intermolecular vibrational energy transfer

    International Nuclear Information System (INIS)

    The understanding of intermolecular vibrational energy transfer (IVET) is important since it is involved in any mechanism in which internal energy is added or removed from molecules. The database for the details of IVET for highly excited polyatomic molecules is inadequate and must be expanded. The overall objectives of this project are: (1) to determine the dependence of energy relaxation on excitation energy and on the molecular complexity of substrate and deactivator, (2) to assess the importance of intermolecular attractions on IVET, (3) to obtain more detailed information on the energy distribution after collision, and (4) to evaluate the importance of IVET on high temperature unimolecular reactions. The first three objectives are being met by experimentally measuring the time evolution of the average energy of the vibrationally excited species (hydro- and fluoro- carbons excited by a pulsed CO2 laser) and the average energy transferred into relative translation via time resolved IR spectrometry, interferometry and optoacoustic techniques. Trajectory calculations simulating IVET are being performed for model substrate/deactivator pairs to provide additional details and insight on the critical parameters. Our calculations for high temperature unimolecular reactions indicate that IVET effects are significant and must be correctly taken into account. 9 refs., 3 figs., 6 tabs

  19. Extraordinary superatom containing double shell nucleus: Li(HF)3Li connected mainly by intermolecular interactions

    Science.gov (United States)

    Sun, Xiao-Ying; Li, Zhi-Ru; Wu, Di; Sun, Chia-Chung

    The structure and properties of the Li(HF)3Li cluster with C3h symmetry are investigated using ab initio calculations. This Li(HF)3Li is a metal-nonmetal-metal sandwich-like cluster connected mainly by the intermolecular interactions. In the special cluster, the (HF)3 containing the triangular F ring with the negative charges is sandwiched between two Li atom. It is interesting that under the action of the triangular F ring with the negative charges, the valence electrons of two Li atoms are pushed out to form the distended excess electron cloud that surrounds the Li(HF)3Li as a core. So the Li(HF)3Li cluster shows not only the electride characteristic, but new superatom characteristics as well. Several characteristics of the special superatom are found. First, the superatom contains the double shell nucleus. The internal nucleus is the regular triangular ring made of three F atoms with the negative charge and the outer-shell nucleus is made up of three H and two Li atoms with the positive charge. Second, the bonding force of this superatom framework is mainly the intermolecular interaction force, the lithium bond, which is different from that (covalent bond or ionic bond) of the general superatom. Third, the interaction between the outer-shell nucleus and the excess electron cloud is mainly the anti-excess-electron hydrogen bond. Fourth, the special superatom exhibits the new aromaticity (NICS = -8.37 ppm at the center of the regular triangular F ring), which is the aromaticity found in the cluster of the intermolecular interaction. This is the new knowledge of the aromaticity. Fifth, the large polarizability of the superatom is revealed. Further, the vertical ionization energy (VIE) of the superatom is low, 4.51 eV (<5.210 eV of the alkaline-earth metal Ba) so that it may be viewed as a superalkaline-earth metal atom.

  20. Intermolecular interactions in poly(vinylidene fluoride) and ?-caprolactam mixtures

    OpenAIRE

    Liu, Zehui; Maréchal, Philippe; Jérôme, Robert

    1996-01-01

    Mixtures of poly(vinylidene fluoride) (PVDF) and caprolactam (CPL) have been investigated as models for possible cross-interactions between vinylidene fluoride and amide structural units, that might account for the very fine phase morphology previously observed in PVDF/polyamide 6 blends. Over the entire composition range, the PVDF/CPL mixtures are monophase above the PVDF melting temperature. From the depression of the PVDF melting point, a negative interaction energy density, B, has been ca...

  1. Double strand interaction is the predominant pathway for intermolecular recombination of adeno-associated viral genomes

    International Nuclear Information System (INIS)

    Intermolecular recombination is the foundation for dual vector mediated larger gene transfer by recombinant adeno-associated virus (rAAV). To identify precursors for intermolecular recombination, we sequentially infected skeletal muscle with AAV LacZ trans-splicing viruses. At 1 month postinfection, nearly all inputting single-strand (ss) AAV genomes were cleared out in muscle. If ss-ss interaction is absolutely required for intermolecular recombination, LacZ expression from sequential infection will be negligible to that from coinfection. Interestingly, expression from sequential infection reached ?50% of that from coinfection at the 1-month time-point in BL6 mice. In immune deficient SCID mice, expression from sequential infection was comparable to that from coinfection at the 4- and 13-month time points. Our results suggest that ds interaction represents the predominant pathway for AAV intermolecular recombination

  2. A Colloidal Description of Intermolecular Interactions Driving Fibril-Fibril Aggregation of a Model Amphiphilic Peptide.

    Science.gov (United States)

    Owczarz, Marta; Motta, Anna C; Morbidelli, Massimo; Arosio, Paolo

    2015-07-14

    We apply a kinetic analysis platform to study the intermolecular interactions underlying the colloidal stability of dispersions of charged amyloid fibrils consisting of a model amphiphilic peptide (RADA 16-I). In contrast to the aggregation mechanisms observed in the large majority of proteins and peptides, where several elementary reactions involving both monomers and fibrils are present simultaneously, the system selected in this work allows the specific investigation of the fibril-fibril aggregation process. We examine the intermolecular interactions driving the aggregation reaction at pH 2.0 by changing the buffer composition in terms of salt concentration, type of ion as well as type and concentration of organic solvent. The aggregation kinetics are followed by dynamic light scattering, and the experimental data are simulated by Smoluchowski population balance equations, which allow to estimate the energy barrier between two colliding fibrils in terms of the Fuchs stability ratio (W). When normalized on a dimensionless time weighted on the Fuchs stability ratio, the aggregation profiles under a broad range of conditions collapse on a single master curve, indicating that the buffer composition modifies the aggregation kinetics without affecting the aggregation mechanism. Our results show that the aggregation process does not occur under diffusion-limited conditions. Rather, the reaction rate is limited by the presence of an activation energy barrier that is largely dominated by electrostatic repulsive interactions. Such interactions could be reduced by increasing the concentration of salt, which induces charge screening, or the concentration of organic solvent, which affects the dielectric constant. It is remarkable that the dependence of the activation energy on the ionic strength can be described quantitatively in terms of charge screening effects in the frame of the DLVO theory, although specific anion and cation effects are also observed. While anion effects are mainly related to the binding to the positive groups of the fibril surface and to the resulting decrease of the surface charge, cation effects are more complex and involve additional solvation forces. PMID:26125620

  3. MODELS OF AMPHOTERICIN MEMBRANE CHANNEL BASED ON CONCERTED INTERMOLECULAR =C-H…O INTERACTIONS

    Directory of Open Access Journals (Sweden)

    Lisnyak Yu. V

    2012-10-01

    Full Text Available To study the possibility for amphotericin to form membrane channel via intermolecular interactions mimicing the association mode of polyene macrolides in crystal structures we have built two channel models in vacuo: amphotericin B octamer and hexamer. The octamer model does not reproduce the concerted weak =C-H…O intermolecular interactions within the whole aggregate structure and has too large pore diameter. For hexamer model, the pore diameter is within experimental estimates. The hexamer model rather well reproduces characteristic features of a channel with such concerted weak interactions: association mode, H-bonding pattern within the whole assembly and accessibility of polyene hydroxyl groups for hydrophyllic interactions in the pore.

  4. Determination of stepsize parameters for intermolecular vibrational energy transfer

    Energy Technology Data Exchange (ETDEWEB)

    Tardy, D.C.

    1992-03-01

    Intermolecular energy transfer of highly excited polyatomic molecules plays an important role in many complex chemical systems: combustion, high temperature and atmospheric chemistry. By monitoring the relaxation of internal energy we have observed trends in the collisional efficiency ({beta}) for energy transfer as a function of the substrate's excitation energy and the complexities of substrate and deactivator. For a given substrate {beta} increases as the deactivator's mass increase to {approximately}30 amu and then exhibits a nearly constant value; this is due to a mass mismatch between the atoms of the colliders. In a homologous series of substrate molecules (C{sub 3}{minus}C{sub 8}) {beta} decreases as the number of atoms in the substrate increases; replacing F with H increases {beta}. All substrates, except for CF{sub 2}Cl{sub 2} and CF{sub 2}HCl below 10,000 cm{sup {minus}1}, exhibited that {beta} is independent of energy, i.e. <{Delta}E>{sub all} is linear with energy. The results are interpreted with a simple model which considers that {beta} is a function of the ocillators energy and its vibrational frequency. Limitations of current approximations used in high temperature unimolecular reactions were evaluated and better approximations were developed. The importance of energy transfer in product yields was observed for the photoactivation of perfluorocyclopropene and the photoproduction of difluoroethyne. 3 refs., 18 figs., 4 tabs.

  5. Reversible electron-induced cis-trans isomerization mediated by intermolecular interactions

    International Nuclear Information System (INIS)

    Reversible isomerization processes are rarely found when organic molecular switches are adsorbed on metal surfaces. One obstacle is the large energy difference of the isomeric forms, since usually the most planar conformer has the largest adsorption energy. In the example of an imine derivative, we show a strategy for also stabilizing the non-planar isomer by intermolecular bonding to its neighbors. Tunneling electrons from the tip of a scanning tunneling microscope can then be used to induce reversible switching between the trans and cis-like state. Supported by model force-field calculations, we illustrate that the most probable cause of the enhanced stability of the three-dimensional cis state at specific adsorption sites is the electrostatic interaction with N sites of the neighboring molecule.

  6. Influence of intermolecular interactions on spectroscopic characteristics of metal nanoparticles and their composites.

    Science.gov (United States)

    Shaganov, Igor I; Perova, Tatiana S; Mukhina, Maria V; Martynenko, Irina V; Baranov, Alexander V; Fedorov, Anatoly V; Gerard, Valerie; Gun'ko, Yuri K

    2014-11-28

    In this paper we investigate the possibility to apply the concepts of non-specific intermolecular interactions and dispersive local field effect approach for study of the influence of interactions of metal nanoparticles with matrix molecules on the spectral characteristics of composites. The effect of intermolecular (interparticle) interactions and the influence of the dielectric environment on the peak position of the plasmon resonance band of colloidal solutions and thin films formed from noble metal nanostructures is determined. Simulated and experimental absorption spectra obtained for a colloidal solution of silver and gold nanoparticles, of various shapes and sizes in water and glycerol, are in good agreement. PMID:25310112

  7. Effect of intermolecular interactions on the nucleation, growth, and propagation of like-spin domains in spin-crossover materials

    Science.gov (United States)

    Slimani, A.; Boukheddaden, K.; Yamashita, K.

    2015-07-01

    The nucleation, growth, and propagation of like-spin domains in spin-crossover materials was investigated during the relaxation process of a metastable HS state at low temperature using an electroelastic model running on a deformable two-dimensional square lattice. We distinguish the onset of patterns formation of low-spin domain as the intermolecular interaction is increased, passing successively through random dispersion to clustering pattern and ending up with an impressive single macroscopic domain growth. Attaining and maintaining a single-domain configuration through the transition is attributed to the long-range character of interactions. Qualitative investigation of the elastic energy, of the propagation of the low-spin domain, and of the displacement field are presented. We demonstrate that as the intermolecular interaction increases the propagation of the like-spin domain slowdown. The deformations are believed as the prolonged effect of the intermolecular interactions that are at the origin of the onset of dispersed, poly-, and single-domain nucleation. Spatial autocorrelation of the deformations analysis based on Moran's I index is used. We demonstrate that at short distance significant spatially autocorrelated patterns are detected, and the extent of the autocorrelation decreases with the distance.

  8. Ab initio intermolecular potential energy surface and thermophysical properties of nitrous oxide.

    Science.gov (United States)

    Crusius, Johann-Philipp; Hellmann, Robert; Hassel, Egon; Bich, Eckard

    2015-06-28

    We present an analytical intermolecular potential energy surface (PES) for two rigid nitrous oxide (N2O) molecules derived from high-level quantum-chemical ab initio calculations. Interaction energies for 2018 N2O-N2O configurations were computed utilizing the counterpoise-corrected supermolecular approach at the CCSD(T) level of theory using basis sets up to aug-cc-pVQZ supplemented with bond functions. A site-site potential function with seven sites per N2O molecule was fitted to the pair interaction energies. We validated our PES by computing the second virial coefficient as well as shear viscosity and thermal conductivity in the dilute-gas limit. The values of these properties are substantiated by the best experimental data. PMID:26133428

  9. Vibrational spectroscopy on intermolecular interactions in solutions and at interfaces

    OpenAIRE

    Nissink, Johannes Wilhelmus Maria

    1999-01-01

    In recent years, considerable progress has been made in the areas of molecular recognition and surface analysis. These fields meet in the field of sensor development, where the interaction between molecules and a suitably modified surface is of utmost importance. Vibrational spectroscopy is quite useful in these areas of research, as it may reveal the processes taking place at a molecular level. This thesis describes a number of applications of vibrational spectroscopy in the anal...

  10. Intermolecular interactions in the bilirubin-cholate-silica system

    Science.gov (United States)

    Vlasova, N. N.; Golovkova, L. P.; Severinovskaya, O. V.

    2007-06-01

    Bilirubin-cholate interactions in aqueous solutions were studied. The constants of binding of bilirubin with taurocholate dimers and taurodeoxycholate trimers were calculated. The adsorption of bilirubin and cholates on the surface of highly dispersed silica was studied. It was shown that taurine-conjugated cholates are poorly adsorbed from micellar solutions on the silica surface, the specific amount of bilirubin adsorbed decreases with increasing concentration of cholates in the solution, the affinity of free bilirubin for the silica surface is independent of the nature of the cholic acid, and that the affinity of cholate-bilirubin complexes for the silica surface is lower than the affinity of free bilirubin.

  11. DFT calculation of the intermolecular exchange interaction in the magnetic Mn$_4$ dimer

    OpenAIRE

    Park, Kyungwha; Pederson, Mark R.; Richardson, Steven L.; Aliaga-Alcalde, Nuria; Christou, George

    2003-01-01

    The dimeric form of the single-molecule magnet [Mn$_4$O$_3$Cl$_4$(O$_2$CEt)$_3$(py)$_3$]$_2$ recently revealed interesting phenomena: no quantum tunneling at zero field and tunneling before magnetic field reversal. This is attributed to substantial antiferromagnetic exchange interaction between different monomers. The intermolecular exchange interaction, electronic structure and magnetic properties of this molecular magnet are calculated using density-functional theory within generalized-grad...

  12. Theoretical calculations: can Gibbs free energy for intermolecular complexes be predicted efficiently and accurately?

    Science.gov (United States)

    Isayev, Olexandr; Gorb, Leonid; Leszczynski, Jerzy

    2007-07-15

    The theoretical study has been performed to refine the procedure for calculations of Gibbs free energy with a relative accuracy of less than 1 kcal/mol. Three benchmark intermolecular complexes are examined via several quantum-chemical methods, including the second-order Moller-Plesset perturbation (MP2), coupled cluster (CCSD(T)), and density functional (BLYP, B3LYP) theories augmented by Dunnings correlation-consistent basis sets. The effects of electron correlation, basis set size, and anharmonicity are systematically analyzed, and the results are compared with available experimental data. The results of the calculations suggest that experimental accuracy can be reached only by extrapolation of MP2 and CCSD(T) total energies to the complete basis set. The contribution of anharmonicity to the zero point energy and TDeltaSint values is fairly small. The new, economic way to reach chemical accuracy in the calculations of the thermodynamic parameters of intermolecular interactions is proposed. In addition, interaction energy (De) and free energy change (DeltaA) for considered species have been evaluated by Carr-Parrinello molecular dynamics (CPMD) simulations and static BLYP-plane wave calculations. The free energy change along the reaction paths were determined by the thermodynamic integration/"Blue Moon Ensemble" technique. Comparison between obtained values, and available experimental and conventional ab initio results has been made. We found that the accuracy of CPMD simulations is affected by several factors, including statistical uncertainty and convergence of constrained forces (TD integration), and the nature of DFT (density functional theory) functional. The results show that CPMD technique is capable of reproducing interaction and free energy with an accuracy of 1 kcal/mol and 2-3 kcal/mol respectively. PMID:17340602

  13. Intermolecular Interactions between Eosin Y and Caffeine Using 1H-NMR Spectroscopy

    OpenAIRE

    Okuom, Macduff O.; Wilson, Mark V.; Abby Jackson; Holmes, Andrea E.

    2013-01-01

    DETECHIP has been used in testing analytes including caffeine, cocaine, and tetrahydrocannabinol (THC) from marijuana, as well as date rape and club drugs such as flunitrazepam, gamma-hydroxybutyric acid (GHB), and methamphetamine. This study investigates the intermolecular interaction between DETECHIP sensor eosin Y (DC1) and the analyte (caffeine) that is responsible for the fluorescence and color changes observed in the actual array. Using 1H-NMR, 1H-COSY, and 1H-DOSY NMR methods, a proton...

  14. Intermolecular interactions between imidazole derivatives intercalated in layered solids. Substituent group effect

    Energy Technology Data Exchange (ETDEWEB)

    González, M.; Lemus-Santana, A.A. [Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Unidad Legaria, Instituto Politécnico Nacional, México, DF (Mexico); Rodríguez-Hernández, J. [Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Unidad Legaria, Instituto Politécnico Nacional, México, DF (Mexico); Instituto de Ciencia y Tecnología de Materiales, Universidad de La Habana, Havana (Cuba); Aguirre-Velez, C.I. [Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Unidad Legaria, Instituto Politécnico Nacional, México, DF (Mexico); Knobel, M. [Institute of Physics “Gleb Wataghin”, UNICAMP, 13083-970 Campinas, SP (Brazil); Reguera, E., E-mail: edilso.reguera@gmail.com [Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada, Unidad Legaria, Instituto Politécnico Nacional, México, DF (Mexico)

    2013-08-15

    This study sheds light on the intermolecular interactions between imidazole derive molecules (2-methyl-imidazole, 2-ethyl-imidazole and benzimidazole) intercalated in T[Ni(CN){sub 4}] layers to form a solid of formula unit T(ImD){sub 2}[Ni(CN){sub 4}]. These hybrid inorganic–organic solids were prepared by soft chemical routes and their crystal structures solved and refined from X-ray powder diffraction data. The involved imidazole derivative molecules were found coordinated through the pyridinic N atom to the axial positions for the metal T in the T[Ni(CN){sub 4}] layer. In the interlayers region ligand molecules from neighboring layers remain stacked in a face-to-face configuration through dipole–dipole and quadrupole–quadrupole interactions. These intermolecular interactions show a pronounced dependence on the substituent group and are responsible for an ImD-pillaring concatenation of adjacent layers. This is supported by the structural information and the recorded magnetic data in the 2–300 K temperature range. The samples containing Co and Ni are characterized by presence of spin–orbit coupling and pronounced temperature dependence for the effective magnetic moment except for 2-ethyl-imidazole related to the local distortion for the metal coordination environment. For this last one ligand a weak ferromagnetic ordering ascribed to a super-exchange interaction between T metals from neighboring layers through the ligands ?–? interaction was detected. - Graphical abstract: In the interlayers region imidazole derivative molecules are oriented according to their dipolar and quadrupolar interactions and minimizing the steric impediment. Highlights: • Imidazole derivatives intercalation compounds. • Intermolecular interaction between intercalated imidazole derivatives. • Hybrid inorganic–organic solids. • Pi–pi interactions and ferromagnetic coupling. • Dipolar and quadrupolar interactions between intercalated imidazole derivatives.

  15. Intermolecular interactions between imidazole derivatives intercalated in layered solids. Substituent group effect

    International Nuclear Information System (INIS)

    This study sheds light on the intermolecular interactions between imidazole derive molecules (2-methyl-imidazole, 2-ethyl-imidazole and benzimidazole) intercalated in T[Ni(CN)4] layers to form a solid of formula unit T(ImD)2[Ni(CN)4]. These hybrid inorganic–organic solids were prepared by soft chemical routes and their crystal structures solved and refined from X-ray powder diffraction data. The involved imidazole derivative molecules were found coordinated through the pyridinic N atom to the axial positions for the metal T in the T[Ni(CN)4] layer. In the interlayers region ligand molecules from neighboring layers remain stacked in a face-to-face configuration through dipole–dipole and quadrupole–quadrupole interactions. These intermolecular interactions show a pronounced dependence on the substituent group and are responsible for an ImD-pillaring concatenation of adjacent layers. This is supported by the structural information and the recorded magnetic data in the 2–300 K temperature range. The samples containing Co and Ni are characterized by presence of spin–orbit coupling and pronounced temperature dependence for the effective magnetic moment except for 2-ethyl-imidazole related to the local distortion for the metal coordination environment. For this last one ligand a weak ferromagnetic ordering ascribed to a super-exchange interaction between T metals from neighboring layers through the ligands π–π interaction was detected. - Graphical abstract: In the interlayers region imidazole derivative molecules are oriented according to their dipolar and quadrupolar interactions and minimizing the steric impediment. Highlights: • Imidazole derivatives intercalation compounds. • Intermolecular interaction between intercalated imidazole derivatives. • Hybrid inorganic–organic solids. • Pi–pi interactions and ferromagnetic coupling. • Dipolar and quadrupolar interactions between intercalated imidazole derivatives

  16. Cyano-Functionalized Triarylamines on Coinage Metal Surfaces: Interplay of Intermolecular and Molecule-Substrate Interactions.

    Science.gov (United States)

    Müller, Kathrin; Moreno-López, Juan Carlos; Gottardi, Stefano; Meinhardt, Ute; Yildirim, Handan; Kara, Abdelkader; Kivala, Milan; Stöhr, Meike

    2016-01-11

    The self-assembly of cyano-functionalized triarylamine derivatives on Cu(111), Ag(111) and Au(111) was studied by means of scanning tunnelling microscopy, low-energy electron diffraction, X-ray photoelectron spectroscopy and density functional theory calculations. Different bonding motifs, such as antiparallel dipolar coupling, hydrogen bonding and metal coordination, were observed. Whereas on Ag(111) only one hexagonally close-packed pattern stabilized by hydrogen bonding is observed, on Au(111) two different partially porous phases are present at submonolayer coverage, stabilized by dipolar coupling, hydrogen bonding and metal coordination. In contrast to the self-assembly on Ag(111) and Au(111), for which large islands are formed, on Cu(111), only small patches of hexagonally close-packed networks stabilized by metal coordination and areas of disordered molecules are found. The significant variety in the molecular self-assembly of the cyano-functionalized triarylamine derivatives on these coinage metal surfaces is explained by differences in molecular mobility and the subtle interplay between intermolecular and molecule-substrate interactions. PMID:26636437

  17. Determination of Intermolecular Interactions Using Polarization Compensated Heteronuclear Overhauser Effect of Hyperpolarized Spins.

    Science.gov (United States)

    Kim, Jihyun; Liu, Mengxiao; Chen, Hsueh-Ying; Hilty, Christian

    2015-11-01

    The nuclear Overhauser effect (NOE) has long been used as a selective indicator for intermolecular interactions. Due to relatively small changes of signal intensity, often on the order of several percent, quantitative NOE measurements can be challenging. Hyperpolarization of nuclear spins can dramatically increase the NOE intensity by increasing population differences, but poses its own challenge in quantifying the original polarization level. Here, we demonstrate a method for the accurate measurement of intermolecular heteronuclear cross-relaxation rates by simultaneous acquisition of signals from both nuclei. Using this method, we measure cross-relaxation rates between water protons and (19)F of trifluoroacetic acid at concentrations ranging from 23 to 72 mM. A concentration-independent value of 2.46 × 10(-4) ± 1.02 × 10(-5) s(-1) M(-1) is obtained at a temperature of 301 K and validated using a nonhyperpolarized measurement. In a broader context, accurate measurement of heteronuclear cross-relaxation rates may enable the study of intermolecular interactions including those involving macromolecules where (19)F atoms can be introduced as site-selective labels. PMID:26426882

  18. Intermolecular potential energy surface and thermophysical properties of ethylene oxide

    International Nuclear Information System (INIS)

    A six-dimensional potential energy hypersurface (PES) for two interacting rigid ethylene oxide (C2H4O) molecules was determined from high-level quantum-chemical ab initio calculations. The counterpoise-corrected supermolecular approach at the MP2 and CCSD(T) levels of theory was utilized to determine interaction energies for 10178 configurations of two molecules. An analytical site-site potential function with 19 sites per ethylene oxide molecule was fitted to the interaction energies and fine tuned to agree with data for the second acoustic virial coefficient from accurate speed of sound measurements. The PES was validated by computing the second virial coefficient, shear viscosity, and thermal conductivity. The values of these properties are substantiated by the best experimental data as they tend to fall within the uncertainty intervals and also obey the experimental temperature functions, except for viscosity, where experimental data are insufficient. Due to the lack of reliable data, especially for the transport properties, our calculated values are currently the most accurate estimates for these properties of ethylene oxide

  19. Intermolecular interactions in poly(methyl methacrylate) modified with silver, copper, or neodymium trifluoroacetates

    International Nuclear Information System (INIS)

    Intermolecular interactions of polymethylmethacrylate with silver, copper and neodymium trifluoroacetates were investigated by means of gas-liquid chromatography. The possibility for donor-acceptor complexation in relation to nucleophilic compounds, which connected with the delocalization of vacancy orbitals of metal ion during concurrent interaction of trifluoroacetate-anion and polymer matrix, was established to keep in the modified polymer by salts of metals. This was proved by small change of hold-back indexes at blocking active centers of the surface by molecules of water

  20. Vibrational Circular Dichroism (VCD) Reveals Subtle Conformational Aspects and Intermolecular Interactions in the Carnitine Family.

    Science.gov (United States)

    Mazzeo, Giuseppe; Abbate, Sergio; Longhi, Giovanna; Castiglioni, Ettore; Villani, Claudio

    2015-12-01

    Vibrational circular dichroism spectra (VCD) in the mid-IR region and electronic circular dichroism (ECD) spectra for three carnitine derivatives in the form of hydrochloride salts were recorded in deuterated methanol solutions. Density Functional Theory calculations help one to understand the significance of the observed VCD bands. VCD and ECD spectra are informative about the absolute configuration of the molecule, but VCD data reveal also some conformational aspects in the N,N,N-trimethyl moiety and inform us about intermolecular interactions gained from the carbonyl stretching region for the acyl substituted carnitines. Chirality 27:907-913, 2015. © 2015 Wiley Periodicals, Inc. PMID:26447810

  1. Intermolecular Interactions and the Release Pattern of Electrospun Curcumin-Polyvinyl(pyrrolidone) Fiber.

    Science.gov (United States)

    Rahma, Annisa; Munir, Muhammad Miftahul; Khairurrijal; Prasetyo, Anton; Suendo, Veinardi; Rachmawati, Heni

    2016-01-01

    An electrospun fiber of polyvinyl(pyrrolidone) (PVP)-Tween 20 (T20) with curcumin as the encapsulated drug has been developed. A study of intermolecular interactions was performed using Raman spectroscopy, Fourier transform infrared (FT-IR), differential scanning calorimetry (DSC), and X-ray diffraction (XRD). The Raman and FT-IR studies showed that curcumin preferrably interacted with T20 and altered PVP chain packing, as supported by XRD and physical stability data. The hydroxyl stretching band in PVP shifted to a lower wavenumber with higher intenstity in the presence of curcumin and PVP, indicating that hydrogen bond formation is more intense in a curcumin or curcumin-T20 containing fiber. The thermal pattern of the fiber did not indicate phase separation. The conversion of curcumin into an amorphous state was confirmed by XRD analysis. An in vitro release study in phosphate buffer pH 6.8 showed that intermolecular interactions between each material influenced the drug release rate. However, low porosity was found to limit the hydrogen bond-mediated release. PMID:26830478

  2. The Molecular Oxygen Tetramer: Intermolecular Interactions and Implications for the $\\epsilon$ Solid Phase

    CERN Document Server

    Bartolomei, Massimiliano; Hernández, Marta I; Pérez-Ríos, Jesús; Campos-Martínez, José; Hernández-Lamoneda, Ramón

    2011-01-01

    Recent data have determined that the structure of the high pressure $\\epsilon$ phase of solid oxygen consists of clusters composed of four O$_2$ molecules. This finding has opened the question about the nature of the intermolecular interactions within the molecular oxygen tetramer. We use multiconfigurational ab initio calculations to obtain an adequate characterization of the ground singlet state of (O$_2$)$_4$ which is compatible with the non magnetic character of the $\\epsilon$ phase. In contrast to previous suggestions implying chemical bonding, we show that (O$_2$)$_4$ is a van der Waals like cluster where exchange interactions preferentially stabilize the singlet state. However, as the cluster shrinks, there is an extra stabilization due to many-body interactions that yields a significant softening of the repulsive wall. We show that this short range behavior is a key issue for the understanding of the structure of $\\epsilon$-oxygen.

  3. Intermolecular interactions during complex coacervation of pea protein isolate and gum arabic.

    Science.gov (United States)

    Liu, Shuanghui; Cao, Yuan-Long; Ghosh, Supratim; Rousseau, Dérick; Low, Nicholas H; Nickerson, Michael T

    2010-01-13

    The nature of intermolecular interactions during complexation between pea protein isolate (PPI) and gum arabic (GA) was investigated as a function of pH (4.30-2.40) by turbidimetric analysis and confocal scanning microscopy in the presence of destabilizing agents (100 mM NaCl or 100 mM urea) and at different temperatures (6-60 degrees C). Complex formation followed two pH-dependent structure-forming events associated with the formation of soluble and insoluble complexes and involved interactions between GA and PPI aggregates. Complex formation was driven by electrostatic attractive forces between complementary charged biopolymers, with secondary stabilization by hydrogen bonding. Hydrophobic interactions were found to enhance complex stability at lower pH (pH 3.10), but not with its formation. PMID:19938857

  4. Generalized Intermolecular Interaction Tensor Applied to Long-Range Interactions in Hydrogen and Coinage Metal (Cu, Ag, and Au) Clusters.

    Science.gov (United States)

    Hatz, Richard; Korpinen, Markus; Hänninen, Vesa; Halonen, Lauri

    2015-12-01

    We present a novel formulation for the intermolecular interaction tensor, which is used to describe the long-range electrostatic, induction, and dispersion interactions. Our formulation is based on concepts drawn from combinatorial analysis and Clifford calculus and enables us to present the interaction tensor in a form that is simple to use and suitable for both numerical and symbolic analyses. We apply the derived formulas to calculate the long-range interaction coefficients in hydrogen and coinage metal (Cu, Ag, and Au) clusters. The electronic structure calculations are performed at the CCSD(T) level, with triple-? and quadruple-? basis sets. The multipole moments and dispersion coefficients are obtained as fits to the derived interaction formulas. The most important interaction parameters are obtained accurately and are in good agreement with other results. PMID:26501212

  5. Relativistic effects in the intermolecular interaction-induced nuclear magnetic resonance parameters of xenon dimer

    DEFF Research Database (Denmark)

    Hanni, Matti; Lantto, Perttu; Ilias, Miroslav; Jensen, Hans Jørgen Aagaard; Vaara, Juha

    2007-01-01

    Relativistic effects on the 129Xe nuclear magnetic resonance shielding and 131Xe nuclear quadrupole coupling (NQC) tensors are examined in the weakly bound Xe2 system at different levels of theory including the relativistic four-component Dirac-Hartree-Fock (DHF) method. The intermolecular...... interaction-induced binary chemical shift d, the anisotropy of the shielding tensor ?s, and the NQC constant along the internuclear axis ?ll are calculated as a function of the internuclear distance. DHF shielding calculations are carried out using gauge-including atomic orbitals. For comparison, the full...... leading-order one-electron Breit-Pauli perturbation theory (BPPT) is applied using a common gauge origin. Electron correlation effects are studied at the nonrelativistic (NR) coupled-cluster singles and doubles with perturbational triples [CCSD(T)] level of theory. The fully relativistic second...

  6. Spectroscopic studies on weak intermolecular interactions of fluoranthene derivatives with benzene or ethanol in cyclohexane

    International Nuclear Information System (INIS)

    Complete text of publication follows. We have published on the spectroscopic study on the formation of a 1:1 molecular complex of fluoranthene (F) with benzene (B) in cyclohexane and estimated the equilibrium constant K(F-B) (0.147 dm3 mol-1 at 298 K), enthalpy change DH(F-B) (-5.9 kJ mol-1) and entropy change DS(F-B) (-36 JK-1mol-1 at 298 K) for this complex formation (S. Enomoto et al., Bull. Chem. Soc. Jpn., 75 (2002) 689-693). In this study, the electronic absorption spectra have been observed for the fluoranthene derivatives in cyclohexane-benzene and/or cyclohexane-ethanol mixed solvents to investigate the weak intermolecular interactions between fluoranthene derivatives and benzene or ethanol. The electronic absorption spectra of 3-aminofluoranthene (AF) in the mixed solvent mentioned above showed isosbestic points with varying B and ethanol (E) concentrations. These observations indicate that AF forms a 1:1 molecular complex with B or E, the K(AF-B) and K(AF-E) values for these complex formations being estimated as 0.146 and 0.647 dm3 mol-1 at 298 K, respectively. Temperature dependence of K(AF-B) and K(AF-E) yielded ?H(AF-B) and ?H(AF-E) values of -6.3 and -14.2 kJ mol-1, respectively, ?S(AF-B) and ?S(AF-E) values being respectively calculated as -40 and -51 JK-1mol-1 at 298 K. Applying similar experimental and calculational procedures to 3-nitrofluoranthene (NF) in cyclohexane-B mixed solvent, K(NF-B), ?H(NF-B) and ?S(NF-B) values were estimated as 0.064 dm3 mol-1 at 298 K, -14.6 kJ mol-1 and -72 JK-1 mol1 at 298 K, respectively, for the 1:1 molecular complex formation of NF with B. It is interesting to note that the amino group has almost no effect on the stability of F-B molecular complex since K(AF-B) is comparable to K(F-B) value. It is, further, noted that AF-E and NF-B complexes are enthalpically easier and entropically harder to be formed, respectively, than AF-B one. Assuming that the dispersion energy involved in ?H(NF-B) is the same in magnitude as ?H(F-B) which is considered to be purely dispersion energy, the induction energy contributed to ?H(NF-B) is calculated as -8.7 kJ mol-1. Concerning the conformations of AF-B and NF-B molecular complexes, both the ab initio and PPP calculations support the sandwich- or parallel-type.

  7. Effects of Weak Intermolecular Interactions on the Molecular Isomerism of Tricobalt Metal Chains

    International Nuclear Information System (INIS)

    Depending on the number of interstitial solvent molecules, n, crystals of the linear chain compound Co3(dipyridylamide)4Cl2·nCH2Cl2 adopt either symmetrical or unsymmetrical metal chain structures. We explore here the possible reasons for such behavior using Hirshfeld surface analysis of intermolecular interactions as well as the charge density determined from 100(1) K X-ray diffraction data on the unsymmetrical complex Co3(dipyridylamide)4Cl2·2.11CH2Cl2, u-1, and crystal structures of u-1 determined from single crystal synchrotron X-ray diffraction data at 20, 150, and 300 K. The new crystal structures are compared with previous structural results on a crystal with slightly different solvent content. This change in solvent content only affects the bond distances to atom Co(3), which are also strongly affected by temperature changes due to a spin crossover transition. Large differences in intermolecular interactions are revealed by the Hirshfeld surface analysis between symmetrical (s-1) and unsymmetrical (u-1) crystal solvates, suggesting that the molecular isomerism is strongly influenced by crystal packing effects. Topological analysis of the static electron density of u-1 suggests that there is direct metal-metal bonding for both the shorter Co(1)-Co(2) and the longer Co(2)-Co(3) contact. The approximate description of the system as a (Co2)2+-dimer and an isolated Co2+-ion is reflected in the character of the metal-ligand interactions, which are more ionic for the isolated Co(3) atom, and the topological charges Co(1)+0.50, Co(2)+0.77, and Co(3)+1.36. The two termini of u-1 are found to be very different, both in terms of structural surroundings as well as topology. The central Co(2) atom is similar to a cobalt atom in a tetragonally distorted octahedral environment resulting in preferred occupancy in the t2g orbitals. The Co(1) atom has significant deformation in the xz and yz planes (z along the chain axis, x and y toward ligands) reflecting covalent interactions with the terminal chlorine atom Cl(1). The Co(3) atom has a relatively high occupancy of the dx2-y2 orbital and a relatively low occupancy of the dxy orbital confirming that these orbitals are involved in the spin crossover process and predominantly responsible for the observed variation in bond lengths with temperature.

  8. Modeling intermolecular interactions of physisorbed organic molecules using pair potential calculations

    International Nuclear Information System (INIS)

    The understanding and control of epitaxial growth of organic thin films is of crucial importance in order to optimize the performance of future electronic devices. In particular, the start of the submonolayer growth plays an important role since it often determines the structure of the first layer and subsequently of the entire molecular film. We have investigated the structure formation of 3,4,9,10-perylene-tetracarboxylic dianhydride and copper-phthalocyanine molecules on Au(111) using pair-potential calculations based on van der Waals and electrostatic intermolecular interactions. The results are compared with the fundamental lateral structures known from experiment and an excellent agreement was found for these weakly interacting systems. Furthermore, the calculations are even suitable for chemisorptive adsorption as demonstrated for copper-phthalocyanine/Cu(111), if the influence of charge transfer between substrate and molecules is known and the corresponding charge redistribution in the molecules can be estimated. The calculations are of general applicability for molecular adsorbate systems which are dominated by electrostatic and van der Waals interaction.

  9. Reliable prediction of three-body intermolecular interactions using dispersion-corrected second-order Møller-Plesset perturbation theory

    Science.gov (United States)

    Huang, Yuanhang; Beran, Gregory J. O.

    2015-07-01

    Three-body and higher intermolecular interactions can play an important role in molecular condensed phases. Recent benchmark calculations found problematic behavior for many widely used density functional approximations in treating 3-body intermolecular interactions. Here, we demonstrate that the combination of second-order Møller-Plesset (MP2) perturbation theory plus short-range damped Axilrod-Teller-Muto (ATM) dispersion accurately describes 3-body interactions with reasonable computational cost. The empirical damping function used in the ATM dispersion term compensates both for the absence of higher-order dispersion contributions beyond the triple-dipole ATM term and non-additive short-range exchange terms which arise in third-order perturbation theory and beyond. Empirical damping enables this simple model to out-perform a non-expanded coupled Kohn-Sham dispersion correction for 3-body intermolecular dispersion. The MP2 plus ATM dispersion model approaches the accuracy of O(N6) methods like MP2.5 or even spin-component-scaled coupled cluster models for 3-body intermolecular interactions with only O(N5) computational cost.

  10. Vibrational dynamics, intermolecular interactions, and compound formation in GeH4–H2 under pressure

    Energy Technology Data Exchange (ETDEWEB)

    Strobel, Timothy A.; Chen, Xiao-Jia; Somayazulu, Maddury; Hemley, Russell J.

    2010-01-01

    Optical microscopy, spectroscopic and x-ray diffraction studies at high-pressure are used to investigate intermolecular interactions in binary mixtures of germane (GeH{sub 4} )+hydrogen (H{sub 2} ) . The measurements reveal the formation of a new molecular compound, with the approximate stoichiometry GeH{sub 4} (H{sub 2} ){sub 2} , when the constituents are compressed above 7.5 GPa. Raman and infrared spectroscopic measurements show multiple H{sub 2} vibrons substantially softened from bulk solid hydrogen. With increasing pressure, the frequencies of several Raman and infrared H{sub 2} vibrons decrease, indicating anomalous attractive interaction for closed-shell, nonpolar molecules. Synchrotron powder x-ray diffraction measurements show that the compound has a structure based on face-centered cubic (fcc) with GeH{sub 4} molecules occupying fcc sites and H{sub 2} molecules likely distributed between O{sub h} and T{sub d} sites. Above ca. 17 GPa, GeH{sub 4} molecules in the compound become unstable with respect to decomposition products (Ge+H{sub 2} ) , however, the compound can be preserved metastably to ca. 27 GPa for time-scales of the order of several hours.

  11. Intermolecular interaction between a branching ribozyme and associated homing endonuclease mRNA

    DEFF Research Database (Denmark)

    Birgisdottir, Asa B; Nielsen, Henrik; Beckert, Bertrand; Masquida, Benoît; Johansen, Steinar D

    2011-01-01

    tetraloop in a small branching ribozyme (DiGIR1) and a receptor motif (HEG P1 motif) present in a hairpin structure on a separate mRNA molecule. DiGIR1 generates a 2', 5' lariat cap at the 5' end of its downstream homing endonuclease mRNA by catalysing a self-cleavage branching reaction at an internal......-like motif (UCUAAG-CAAGA) found within the HEG P1. The biological role of this interaction appears to be linked to the homing endonuclease expression by promoting post-cleavage release of the lariat capped mRNA. These findings add to our understanding of how protein-coding genes embedded in nuclear ribosomal...... processing site. Upon release, the 5' end of the mRNA forms a distinct hairpin structure termed HEG P1. Our biochemical data, in concert with molecular 3D modelling, provide experimental support for an intermolecular tetraloop receptor interaction between the L9 GAAA in DiGIR1 and a GNRA tetraloop receptor...

  12. Anti-plasticizing effect of amorphous indomethacin induced by specific intermolecular interactions with PVA copolymer.

    Science.gov (United States)

    Ueda, Hiroshi; Aikawa, Shohei; Kashima, Yousuke; Kikuchi, Junko; Ida, Yasuo; Tanino, Tadatsugu; Kadota, Kazunori; Tozuka, Yuichi

    2014-09-01

    The mechanism of how poly(vinyl alcohol-co-acrylic acid-co-methyl methacrylate) (PVA copolymer) stabilizes an amorphous drug was investigated. Solid dispersions of PVA copolymer, poly(vinyl pyrrolidone) (PVP), and poly(vinyl pyrrolidone-co-vinyl acetate) (PVPVA) with indomethacin (IMC) were prepared. The glass transition temperature (Tg)-proportion profiles were evaluated by differential scanning calorimetry (DSC). General Tg profiles decreasing with the IMC ratio were observed for IMC-PVP and IMC-PVPVA samples. An interesting antiplasticizing effect of IMC on PVA copolymer was observed; Tg increased up to 20% IMC ratio. Further addition of IMC caused moderate reduction with positive deviation from theoretical values. Specific hydrophilic and hydrophobic interactions between IMC and PVA copolymer were revealed by infrared spectra. The indole amide of IMC played an important role in hydrogen bonding with PVA copolymer, but not with PVP and PVPVA. X-ray diffraction findings and the endotherm on DSC profiles suggested that PVA copolymer could form a semicrystalline structure and a possibility of correlation of the crystallographic nature with its low hygroscopicity was suggested. PVA copolymer was able to prevent crystallization of amorphous IMC through both low hygroscopicity and the formation of a specific intermolecular interaction compared with that with PVP and PVPVA. PMID:24890320

  13. Intermolecular vs molecule–substrate interactions: A combined STM and theoretical study of supramolecular phases on graphene/Ru(0001

    Directory of Open Access Journals (Sweden)

    Michael Roos

    2011-07-01

    Full Text Available The competition between intermolecular interactions and long-range lateral variations in the substrate–adsorbate interaction was studied by scanning tunnelling microscopy (STM and force field based calculations, by comparing the phase formation of (sub- monolayers of the organic molecules (i 2-phenyl-4,6-bis(6-(pyridin-3-yl-4-(pyridin-3-ylpyridin-2-ylpyrimidine (3,3'-BTP and (ii 3,4,9,10-perylene tetracarboxylic-dianhydride (PTCDA on graphene/Ru(0001. For PTCDA adsorption, a 2D adlayer phase was formed, which extended over large areas, while for 3,3'-BTP adsorption linear or ring like structures were formed, which exclusively populated the areas between the maxima of the moiré structure of the buckled graphene layer. The consequences for the competing intermolecular interactions and corrugation in the adsorption potential are discussed and compared with the theoretical results.

  14. A combined experimental and quantum chemical studies on molecular structure, spectral properties, intra and intermolecular interactions and first hyperpolarizability of 4-(benzyloxy)benzaldehyde thiosemicarbazone and its dimer

    Science.gov (United States)

    Kumar, Amit; Rawat, Poonam; Baboo, Vikas; Verma, Divya; Singh, R. N.; Saxena, Deepti; Gauniyal, H. M.; Pandey, Anoop Kumar; Pal, Harish

    2013-02-01

    In the present work, a detailed spectroscopic analysis of 4-(benzyloxy)benzaldehyde thiosemicarbazone (3) has been carried out using 1H NMR, 13C NMR, UV-Visible and FT-IR spectroscopic techniques. The quantum chemical calculations have been carried out using DFT level of theory, B3LYP functional and 6-31G(d,p) basis set. The calculated thermodynamic parameters show that the formation of 3 is an exothermic and spontaneous reaction at 25 °C. The vibrational analysis indicates the formation of dimer in the solid state by intermolecular hydrogen bonding (Nsbnd H⋯Sdbnd C) and the binding energy of dimer is calculated to be 11.2 kcal/mol, using DFT calculation. NBO analysis is carried out to investigate the charge transfer in various intra and intermolecular interactions involved in dimer. Topological parameters at bond critical points (BCPs) are calculated to analyze the strength and nature of various intra and intermolecular interactions in dimer by Bader's 'Atoms in molecules' AIM theory in detail. The local reactivity descriptors such as Fukui functions (fk+, fk-), local softnesses (sk+, sk-) and electrophilicity indices (?k+, ?k-) analysis are performed to determine the reactive sites within molecule. Non linear optical (NLO) behavior of title compound is investigated by the computed value of first hyperpolarizability (?0).

  15. Energy relaxation of intermolecular motions in supercooled water and ice: A molecular dynamics study

    Science.gov (United States)

    Yagasaki, Takuma; Saito, Shinji

    2011-12-01

    We investigate the energy relaxation of intermolecular motions in liquid water at temperatures ranging from 220 K to 300 K and in ice at 220 K using molecular dynamics simulations. We employ the recently developed frequency resolved transient kinetic energy analysis, which provides detailed information on energy relaxation in condensed phases like two-color pump-probe spectroscopy. It is shown that the energy cascading in liquid water is characterized by four processes. The temperature dependences of the earlier three processes, the rotational-rotational, rotational-translational, and translational-translational energy transfers, are explained in terms of the density of states of the intermolecular motions. The last process is the slow energy transfer arising from the transitions between potential energy basins caused by the excitation of the low frequency translational motion. This process is absent in ice because the hydrogen bond network rearrangement, which accompanies the interbasin transitions in liquid water, cannot take place in the solid phase. We find that the last process in supercooled water is well approximated by a stretched exponential function. The stretching parameter, ?, decreases from 1 to 0.72 with decreasing temperature. This result indicates that the dynamics of liquid water becomes heterogeneous at lower temperatures.

  16. The origins of intra- and inter-molecular vibrational couplings: A case study of H2O-Ar on full and reduced-dimensional potential energy surface

    Science.gov (United States)

    Hou, Dan; Ma, Yong-Tao; Zhang, Xiao-Long; Li, Hui

    2016-01-01

    The origin and strength of intra- and inter-molecular vibrational coupling is difficult to probe by direct experimental observations. However, explicitly including or not including some specific intramolecular vibrational modes to study intermolecular interaction provides a precise theoretical way to examine the effects of anharmonic coupling between modes. In this work, a full-dimension intra- and inter-molecular ab initio potential energy surface (PES) for H2O-Ar, which explicitly incorporates interdependence on the intramolecular (Q1, Q2, Q3) normal-mode coordinates of the H2O monomer, has been calculated. In addition, four analytic vibrational-quantum-state-specific PESs are obtained by least-squares fitting vibrationally averaged interaction energies for the (v1, v2, v3) = (0, 0, 0), (0, 0, 1), (1, 0, 0), (0, 1, 0) states of H2O to the three-dimensional Morse/long-range potential function. Each vibrationally averaged PES fitted to 442 points has root-mean-square (rms) deviation smaller than 0.15 cm-1, and required only 58 parameters. With the 3D PESs of H2O-Ar dimer system, we employed the combined radial discrete variable representation/angular finite basis representation method and Lanczos algorithm to calculate rovibrational energy levels. This showed that the resulting vibrationally averaged PESs provide good representations of the experimental infrared data, with rms discrepancies smaller than 0.02 cm-1 for all three rotational branches of the asymmetric stretch fundamental transitions. The infrared band origin shifts associated with three fundamental bands of H2O in H2O-Ar complex are predicted for the first time and are found to be in good agreement with the (extrapolated) experimental values. Upon introduction of additional intramolecular degrees of freedom into the intermolecular potential energy surface, there is clear spectroscopic evidence of intra- and intermolecular vibrational couplings.

  17. Intermolecular interaction between rare earth and manganese precursors in metalorganic chemical vapor deposition of perovskite manganite films

    International Nuclear Information System (INIS)

    The gas-phase reaction mechanism was investigated in liquid delivery metalorganic chemical vapor deposition (MOCVD) of praseodymium and lanthanum manganite films. We studied the gas-phase behavior of praseodymium, lanthanum, and manganese precursors under actual CVD conditions by in situ infrared absorption spectroscopy. The rate of the decrease of the infrared absorbance due to Pr(DPM)3 was almost constant even if Mn(DPM)3 was added, indicating that the intermolecular interaction between Pr and Mn precursors in the gas phase is relatively weak in MOCVD of praseodymium manganite films. On the other hand, the temperature dependence of the infrared absorption indicates that the thermal decomposition of La(DPM)3 was promoted in the presence of Mn(DPM)3. The significant intermolecular interaction occurs between La and Mn precursors in the gas phase in MOCVD of lanthanum manganite films. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  18. Rubrene: The interplay between intramolecular and intermolecular interactions determines the planarization of its tetracene core in the solid state

    KAUST Repository

    Sutton, Christopher

    2015-06-15

    Rubrene is one of the most studied molecular semiconductors; its chemical structure consists of a tetracene backbone with four phenyl rings appended to the two central fused rings. Derivatization of these phenyl rings can lead to two very different solid-state molecular conformations and packings: One in which the tetracene core is planar and there exists substantive overlap among neighboring π-conjugated backbones; and another where the tetracene core is twisted and the overlap of neighboring π-conjugated backbones is completely disrupted. State-of-the-art electronic-structure calculations show for all isolated rubrene derivatives that the twisted conformation is more favorable (by -1.7 to -4.1 kcal mol-1), which is a consequence of energetically unfavorable exchange-repulsion interactions among the phenyl side groups. Calculations based on available crystallographic structures reveal that planar conformations of the tetracene core in the solid state result from intermolecular interactions that can be tuned through well-chosen functionalization of the phenyl side groups, and lead to improved intermolecular electronic couplings. Understanding the interplay of these intramolecular and intermolecular interactions provides insight into how to chemically modify rubrene and similar molecular semiconductors to improve the intrinsic materials electronic properties.

  19. Rubrene: The Interplay between Intramolecular and Intermolecular Interactions Determines the Planarization of Its Tetracene Core in the Solid State.

    Science.gov (United States)

    Sutton, Christopher; Marshall, Michael S; Sherrill, C David; Risko, Chad; Brédas, Jean-Luc

    2015-07-15

    Rubrene is one of the most studied molecular semiconductors; its chemical structure consists of a tetracene backbone with four phenyl rings appended to the two central fused rings. Derivatization of these phenyl rings can lead to two very different solid-state molecular conformations and packings: One in which the tetracene core is planar and there exists substantive overlap among neighboring ?-conjugated backbones; and another where the tetracene core is twisted and the overlap of neighboring ?-conjugated backbones is completely disrupted. State-of-the-art electronic structure calculations show for all isolated rubrene derivatives that the twisted conformation is more favorable (by -1.7 to -4.1 kcal mol(-1)), which is a consequence of energetically unfavorable exchange-repulsion interactions among the phenyl side groups. Calculations based on available crystallographic structures reveal that planar conformations of the tetracene core in the solid state result from intermolecular interactions that can be tuned through well-chosen functionalization of the phenyl side groups and lead to improved intermolecular electronic couplings. Understanding the interplay of these intramolecular and intermolecular interactions provides insight into how to chemically modify rubrene and similar molecular semiconductors to improve the intrinsic materials electronic properties. PMID:26075966

  20. Theory of intermolecular forces

    CERN Document Server

    Margenau, H; Ter Haar, D

    1971-01-01

    Theory of Intermolecular Forces deals with the exposition of the principles and techniques of the theory of intermolecular forces. The text focuses on the basic theory and surveys other aspects, with particular attention to relevant experiments. The initial chapters introduce the reader to the history of intermolecular forces. Succeeding chapters present topics on short, intermediate, and long range atomic interactions; properties of Coulomb interactions; shape-dependent forces between molecules; and physical adsorption. The book will be of good use to experts and students of quantum mechanics

  1. Analysis of intermolecular interactions in 3-(4-fluoro-3-phenoxyphenyl)-1-((4-methylpiperazin-1-yl)methyl)-1H-1,2,4-triazole-5-thiol

    Indian Academy of Sciences (India)

    Piyush Panini; Rahul Shukla; T P Mohan; B Vishalakshi; Deepak Chopra

    2014-09-01

    In the present study, we have prepared and structurally characterized a derivative of 1,2,4 triazoles, namely 3-(4-fluoro-3-phenoxyphenyl)-1-((4-methylpiperazin-1-yl)methyl)-1H-1,2,4-triazole-5-thiol (T-1) via single crystal X-ray diffraction. The crystal structure was observed to be stabilized by the presence of various intermolecular interactions in the crystalline solid such as O-H…S, C-H…F, C-H…S, C-H…N, C-H…O, C-H$\\ldots$ , $\\ldots$ and $\\ldots$ intermolecular interactions. The interaction energy of these interactions was evaluated through PIXEL method with decomposition of the total energy into the coulombic, polarization, dispersion and repulsion contribution. The study of the nature of H-bonds with sulfur reveals that stabilization due to contribution from polarization plays a significant role. It is noteworthy that the presence of the solvent molecules in the crystal structure were observed to provide stabilization to an otherwise destabilized molecular pair (comprising of two molecules of 1,2,4 triazoles in the asymmetric unit).

  2. Intermolecular vs molecule–substrate interactions: A combined STM and theoretical study of supramolecular phases on graphene/Ru(0001)

    OpenAIRE

    Roos, Michael; Uhl, Benedikt; Künzel, Daniela; Harry E. Hoster; Groß, Axel; Behm, R Jürgen

    2011-01-01

    The competition between intermolecular interactions and long-range lateral variations in the substrate–adsorbate interaction was studied by scanning tunnelling microscopy (STM) and force field based calculations, by comparing the phase formation of (sub-) monolayers of the organic molecules (i) 2-phenyl-4,6-bis(6-(pyridin-3-yl)-4-(pyridin-3-yl)pyridin-2-yl)pyrimidine (3,3'-BTP) and (ii) 3,4,9,10-perylene tetracarboxylic-dianhydride (PTCDA) on graphene/Ru(0001). For PTCDA adsorption, a 2D adla...

  3. Intermolecular vs molecule–substrate interactions: A combined STM and theoretical study of supramolecular phases on graphene/Ru(0001)

    OpenAIRE

    Michael Roos; Benedikt Uhl; Daniela Künzel; Harry E. Hoster; Axel Groß; R. Jürgen Behm

    2011-01-01

    The competition between intermolecular interactions and long-range lateral variations in the substrate–adsorbate interaction was studied by scanning tunnelling microscopy (STM) and force field based calculations, by comparing the phase formation of (sub-) monolayers of the organic molecules (i) 2-phenyl-4,6-bis(6-(pyridin-3-yl)-4-(pyridin-3-yl)pyridin-2-yl)pyrimidine (3,3'-BTP) and (ii) 3,4,9,10-perylene tetracarboxylic-dianhydride (PTCDA) on graphene/Ru(0001). For PTCDA adsorption, a 2...

  4. Intermolecular interaction of thiosemicarbazone derivatives to solvents and a potential Aedes aegypti target

    Science.gov (United States)

    da Silva, João Bosco P.; Hallwass, Fernando; da Silva, Aluizio G.; Moreira, Diogo Rodrigo; Ramos, Mozart N.; Espíndola, José Wanderlan P.; de Oliveira, Ana Daura T.; Brondani, Dalci José; Leite, Ana Cristina L.; Merz, Kenneth M.

    2015-08-01

    DFT calculations were used to access information about structure, energy and electronic properties of series of phenyl- and phenoxymethyl-(thio)semicarbazone derivatives with demonstrated activity against the larvae of Aedes aegypti in stage L4. The way as the thiosemicarbazone derivatives can interact with solvents like DMSO and water were analyzed from the comparison between calculated and experimental 1H NMR chemical shifts. The evidences of thiosemicarbazone derivatives making H-bond interaction to solvent have provide us insights on how they can interact with a potential A. aegypti's biological target, the Sterol Carrier Protein-2.

  5. On the representation of the electric charge distribution in ethane for calculations of the molecular quadrupole moment and intermolecular electrostatic energy

    DEFF Research Database (Denmark)

    Hansen, Flemming Yssing; Alldredge, G. P.; Bruch, L. W.; Taub, H.

    1985-01-01

    and gives a repulsive rather than an attractive electrostatic interaction at typical intermolecular distances. In the local multipole model, the atom-site dipoles give the largest contribution to both the molecular quadrupole moment and the intermolecular interaction. The Journal of Chemical Physics...

  6. Intermolecular interactions in weak donor-acceptor complexes from symmetry-adapted perturbation and coupled-cluster theory: tetracyanoethylene-benzene and tetracyanoethylene-p-xylene.

    Science.gov (United States)

    Kuchenbecker, Dennis; Jansen, Georg

    2012-08-01

    The interactions in the complexes of tetracyanothylene (TCNE) with benzene and p-xylene, often classified as weak electron donor-acceptor (EDA) complexes, are investigated by a range of quantum chemical methods including intermolecular perturbation theory at the DFT-SAPT (symmetry-adapted perturbation theory combined with density functional theory) level and explicitly correlated coupled-cluster theory at the CCSD(T)-F12 level. The DFT-SAPT interaction energies for TCNE-benzene and TCNE-p-xylene are estimated to be -35.7 and -44.9 kJ?mol(-1), respectively, at the complete basis set limit. The best estimates for the CCSD(T) interaction energy are -37.5 and -46.0 kJ?mol(-1), respectively. It is shown that the second-order dispersion term provides the most important attractive contribution to the interaction energy, followed by the first-order electrostatic term. The sum of second- and higher-order induction and exchange-induction energies is found to provide nearly 40?% of the total interaction energy. After addition of vibrational, rigid-rotor, and translational contributions, the computed internal energy changes on complex formation approach results from gas-phase spectrophotometry at elevated temperatures within experimental uncertainties, while the corresponding entropy changes differ substantially. PMID:22696390

  7. Intermolecular interactions at early stage of protein/detergent particle association induced by salt/polyethylene glycol mixtures.

    Science.gov (United States)

    Odahara, Takayuki; Odahara, Koji

    2016-04-01

    Mixtures of neutral salts and polyethylene glycol are used for various purposes in biological studies. Although the effects of each component of the mixtures are theoretically well investigated, comprehension of their integrated effects remains insufficient. In this work, their roles and effects as a precipitant were clarified by studying dependence of precipitation curves on salt concentration for integral membrane protein/detergent particles of different physicochemical properties. The dependence of precipitation curves was reasonably related to intermolecular interactions among relevant molecules such as protein, detergent and polyethylene glycol by considering their physicochemical properties. The obtained relationships are useful as basic information to learn the early stage of biological macromolecular associations. PMID:26705098

  8. Electronic Mechanisms of Intra and Intermolecular J Couplings in Systems with C-H···O Interactions

    OpenAIRE

    Cavasotto, Claudio N.; Vizioli, Celia V.; Martin C. Ruiz de Azua; Claudia G. Giribet

    2003-01-01

    Abstract: Correlation effects on the change of 1J(CH) couplings in model systems I:NCH...H2O and II:CH4...H2O as a function of the H...O distance are discussed. RPA and SOPPA results follow a similar trend in system II. In system I RPA values decrease monotonously as the H...O distance decreases, while SOPPA ones exhibit flat maximum near equilibrium. Such different behavior is ascribed to the À-transmitted component. Intermolecular couplings at the equilibrium geometry of I are analyzed by...

  9. Structural aspects of intermolecular interactions in the solid state of 1,4-dibenzylpiperazines bearing nitrile or amidine groups

    International Nuclear Information System (INIS)

    X-ray diffraction analyses for new pentamidine analogs are presented: 1,4-bis(4-cyanobenzyl)piperazine (1) crystallizes in the triclinic space group and 1,4-bis(4-amidinobenzyl)piperazine tetrahydrochloride tetrahydrate (2) in the monoclinic space group (P21/n) revealing a complex system of hydrogen bonds for (2). The crystal structures of the title 1,4-bis(4-cyanobenzyl)piperazine (1) and 1,4-bis(4-amidinobenzyl)piperazine tetrahydrochloride tetrahydrate (2) are reported. Compound (1) crystallizes in the triclinic space group and compound (2) in the monoclinic space group P21/n. In both (1) and (2) the asymmetric unit contains one half of the molecule because the central piperazine rings were located across a symmetry center. The packing of both molecules was dominated by hydrogen bonds. The crystal lattice of (1) was formed by weak C—H?N and C—H?? interactions. The crystal structure of (2) was completely different, with cations as well as chloride anions and water molecules taking part in intermolecular interactions. Single-crystal X-ray diffraction studies combined with density functional theory (DFT) calculations allowed the characterization of the intermolecular interactions in those two systems having different types of very strong electrophilic groups: non-ionic nitrile and ionic amidine. Chemical shift data from 13C CP/MAS (Cross Polarization Magic Angle Spinning) NMR spectra were analyzed using the different procedures for the theoretical computation of shielding constants

  10. Experimental and theoretical electron-density study of three isoindole derivatives: topological and Hirshfeld surface analysis of weak intermolecular interactions.

    Science.gov (United States)

    Ch?ci?ska, Lilianna; Grabowsky, Simon; Ma?ecka, Magdalena; Rybarczyk-Pirek, Agnieszka J; Jó?wiak, Andrzej; Paulmann, Carsten; Luger, Peter

    2011-12-01

    A combined experimental and theoretical study of three isoindole derivatives was made on the basis of a topological analysis of their electron-density distributions. Experimental electron densities were determined from high-resolution X-ray diffraction data sets measured with synchrotron radiation at 100 K, whereas theoretical calculations were performed using DFT methods at the B3LYP\\6-311++G(3df,3pd) level of approximation. Both experimental and theoretical models are in good agreement with each other. Since the analysed structures possess a variety of hydrogen-bonding interactions, weak intermolecular contacts of C-H···C(?), C,N(?)···C,N(?) and H···H types were subject to our special interest and are discussed in detail. They were characterized quantitatively and qualitatively by topological properties using Bader's Atoms in Molecules theory and by mapping the electron-density distribution, electrostatic potential and a geometric function on the Hirshfeld surface. This way the forces and directions of intermolecular interactions as present on the molecular surfaces were depicted and described. These interactions not only guide crystal packing, but are likewise important for recognition processes involving (aza)isoindole fragments in a biological environment. PMID:22101546

  11. Lack of evidence for intermolecular epistatic interactions between adiponectin and resistin gene polymorphisms in Malaysian male subjects

    Scientific Electronic Library Online (English)

    Cia-Hin, Lau; Sekaran, Muniandy.

    Full Text Available Epistasis (gene-gene interaction) is a ubiquitous component of the genetic architecture of complex traits such as susceptibility to common human diseases. Given the strong negative correlation between circulating adiponectin and resistin levels, the potential intermolecular epistatic interactions be [...] tween ADIPOQ (SNP+45T > G, SNP+276G > T, SNP+639T > C and SNP+1212A > G) and RETN (SNP-420C > G and SNP+299G > A) gene polymorphisms in the genetic risk underlying type 2 diabetes (T2DM) and metabolic syndrome (MS) were assessed. The potential mutual influence of the ADIPOQ and RETN genes on their adipokine levels was also examined. The rare homozygous genotype (risk alleles) of SNP-420C > G at the RETN locus tended to be co-inherited together with the common homozygous genotypes (protective alleles) of SNP+639T > C and SNP+1212A > G at the ADIPOQ locus. Despite the close structural relationship between the ADIPOQ and RETN genes, there was no evidence of an intermolecular epistatic interaction between these genes. There was also no reciprocal effect of the ADIPOQ and RETN genes on their adipokine levels, i.e., ADIPOQ did not affect resistin levels nor did RETN affect adiponectin levels. The possible influence of the ADIPOQ gene on RETN expression warrants further investigation.

  12. Lack of evidence for intermolecular epistatic interactions between adiponectin and resistin gene polymorphisms in Malaysian male subjects

    Directory of Open Access Journals (Sweden)

    Cia-Hin Lau

    2012-01-01

    Full Text Available Epistasis (gene-gene interaction is a ubiquitous component of the genetic architecture of complex traits such as susceptibility to common human diseases. Given the strong negative correlation between circulating adiponectin and resistin levels, the potential intermolecular epistatic interactions between ADIPOQ (SNP+45T > G, SNP+276G > T, SNP+639T > C and SNP+1212A > G and RETN (SNP-420C > G and SNP+299G > A gene polymorphisms in the genetic risk underlying type 2 diabetes (T2DM and metabolic syndrome (MS were assessed. The potential mutual influence of the ADIPOQ and RETN genes on their adipokine levels was also examined. The rare homozygous genotype (risk alleles of SNP-420C > G at the RETN locus tended to be co-inherited together with the common homozygous genotypes (protective alleles of SNP+639T > C and SNP+1212A > G at the ADIPOQ locus. Despite the close structural relationship between the ADIPOQ and RETN genes, there was no evidence of an intermolecular epistatic interaction between these genes. There was also no reciprocal effect of the ADIPOQ and RETN genes on their adipokine levels, i.e., ADIPOQ did not affect resistin levels nor did RETN affect adiponectin levels. The possible influence of the ADIPOQ gene on RETN expression warrants further investigation.

  13. Effect of Intra-molecular Disorder and Inter-molecular Electronic Interactions on the Electronic Structure of Poly-p-Phenylene Vinylene (PPV)

    OpenAIRE

    Yang, Ping; Batista, Enrique R.; Tretiak, Sergei; Saxena, Avadh; Martin, Richard L.; Smith, D. L.

    2007-01-01

    We investigate the role of intra-molecular conformational disorder and inter-molecular electronic interactions on the electronic structure of disorder clusters of poly-p-phenylene vinylene (PPV) oligomers. Classical molecular dynamics is used to determine probable molecular geometries, and first-principle density functional theory (DFT) calculations are used to determine electronic structure. Intra-molecular and inter-molecular effects are disentangled by contrasting results for densely packe...

  14. The effects of intra- and inter-molecular interactions on the photophysics of platinum(II) complexes

    Science.gov (United States)

    Hight, Lauren M.

    Square planar platinum(II) complexes have been the subject of intense study for several years due to their many unique properties and potential applications. Exploiting the emission of these complexes allows for a wide range of applications as spectroscopic probes and anticancer reagents. Manipulation of both intra-molecular and inter-molecular interactions allows one to tune the photophysical properties of compounds with great precision. Chapter one of this thesis will introduce the critical role of platinum(II) in medicinal chemistry and basic photophysics of platinum(II) complexes. Chapter two describes the synthesis and studies of a series of novel expanded framework polypyridine platinum(II) complexes that employ a little-explored method of intra-molecular modification. The majority of the compounds exhibit improved photophysics over the parent compound [Pt(trpy)Cl]+. Chapter three summarizes a body of work conducted by McMillin group members over the past several years and describes the synthesis and characterization of the missing members of the series. These complexes involving 4'-substituted trpy ligands, exhibit very impressive photophysics and utilize a well-recognized approach to intra-molecular modification. Chapter four describes the solid state photophysical properties of compounds synthesized by the Lu group. These compounds provide excellent examples of classic intermolecular interaction in Pt(II) compounds and MMLCT emission.

  15. Intermolecular interaction between rare earth and manganese precursors in metalorganic chemical vapor deposition of perovskite manganite films

    Energy Technology Data Exchange (ETDEWEB)

    Nakamura, Toshihiro [Department of Engineering Science, Osaka Electro-Communication University, 18-8 Hatsu-cho, Neyagawa, Osaka 572-8530 (Japan)

    2015-07-15

    The gas-phase reaction mechanism was investigated in liquid delivery metalorganic chemical vapor deposition (MOCVD) of praseodymium and lanthanum manganite films. We studied the gas-phase behavior of praseodymium, lanthanum, and manganese precursors under actual CVD conditions by in situ infrared absorption spectroscopy. The rate of the decrease of the infrared absorbance due to Pr(DPM){sub 3} was almost constant even if Mn(DPM){sub 3} was added, indicating that the intermolecular interaction between Pr and Mn precursors in the gas phase is relatively weak in MOCVD of praseodymium manganite films. On the other hand, the temperature dependence of the infrared absorption indicates that the thermal decomposition of La(DPM){sub 3} was promoted in the presence of Mn(DPM){sub 3}. The significant intermolecular interaction occurs between La and Mn precursors in the gas phase in MOCVD of lanthanum manganite films. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  16. Intermolecular interactions in mixtures of poly (ethylene glycol) with methoxybenzene and ethoxybenzene: Volumetric and viscometric studies

    International Nuclear Information System (INIS)

    Highlights: • Density and viscosity values of PEG400 + methoxybenzene or + ethoxybenzene were measured. • The excess molar volume and thermodynamic functions of activation were calculated. • The results were interpreted in light of polymer–solvent interactions. • The changes in activation function indicate the viscous flow process. • The thermodynamic functions were correlated with the suitable equations. -- Abstract: The density and viscosity values of the binary mixtures of {poly (ethylene glycol) (PEG400) + methoxybenzene, or + ethoxybenzene} have been measured at T = (298.15, 308.15, and 318.15) K. From these experimental values, the excess molar volume, apparent specific volume, partial specific volume of solute, partial specific volume of solvent and excess Gibbs free energy of activation have been computed over the entire range of composition at three temperatures. From the experimental data, the thermodynamic functions of activation have been estimated for each binary mixture. The obtained results have been interpreted in light of polymer–solvent interactions and packing effects. The signs of excess molar volume and deviations of excess Gibbs free energy of activation have been used to obtain some information in regard to existence of specific interactions between PEG400 and solvents molecules. The changes in entropy and enthalpy of activation from the initial state to the transition state were also calculated in order to see which one of these functions controls viscous flow process in the studied polymer solutions. The excess molar volume and excess Gibbs free energy of activation values have been adequately fitted to the Redlich–Kister polynomial. Apparent specific volume values were correlated with the suitable equation. The different models proposed for correlating the viscosity of polymer solutions or liquid mixtures (segment-based-Eyring–NRTL, segment-based-Eyring–Wilson, Grunbreg–Nissan, Frenkel, Hind et al., Katti–Chauddhri, Tamura–Kurata, Auslander and McAllister) have also been used to fit the viscosity values

  17. Tuning intermolecular interactions to enhance solid-state nanopore force spectroscopy

    Science.gov (United States)

    Foun, Elaine

    Nanopores, nanometer sized holes in membranes, have recently come into prominence as tools for single molecule sensing. A technique called nanopore force spectroscopy uses the nanopore to probe energy landscapes between molecules. With the development of this technique, it will be possible for molecular recognition in complex fluids, such as blood. However, before that can be possible, solid-state nanopores, commonly fabricated in silicon nitride membranes, and having very confined sizes and charged surfaces, need to be optimized to minimize unwanted interactions between solution-phase molecules and the surface. DNA, for example, a crucial part of nanopore force spectroscopy, frequently sticks to the nanopore surface. Surface functionalization techniques, both on the nanopore and molecular surface, were attempted in this thesis work. These surface functionalization methods aimed to reduce surface charge or alter molecular properties in order to minimize the unwanted surface interactions, and they include silane modification, fluid lipid bilayer coating, and surfactant self-assembly on the DNA phosphate backbone. Results from some of these methods yield insights to improve nanopore force spectroscopy performance that will minimize the unwanted surface interactions and deliver on the promise of nanopore sensing.

  18. Perturbation theory of intermolecular interactions: What is the problem, are there solutions?

    International Nuclear Information System (INIS)

    We review the nature of the problem in the framework of Rayleigh-Schroedinger perturbation theory (the polarization approximation) considering explicitly two examples: the interaction of two hydrogen atoms and the interaction of Li with H. We show, in agreement with the work of Claverie and of Morgan and Simon, that the LiH problem is dramatically different from the H2 problem. In particular, the physical states of LiH are higher in energy than an infinite number of discrete, unphysical states and they are buried in a continuum of unbound, unphysical states, which starts well below the lowest physical state. Clavrie has shown that the perturbation expansion, under these circumstances, is likely to converge to an unphysical state of lower energy than the physical ground state, if it converges at all. We review, also, the application of two classes of exchange perturbation theory to LiH and larger systems. We show that the spectra of three Eisenschitz-London (EL) class, exchange perturbation theories have no continuum of unphysical states overlaying the physical states and no discrete, unphysical states below the lowest physical state. In contrast, the spectra of two Hirschfelder-Silbey class theories differ hardly at all from that found with the polarization approximation. Not one of the EL class of perturbation theories, however, eliminates all of the discrete unphysical states

  19. Theoretical Studies on the Intermolecular Interactions of Potentially Primordial Base-Pair Analogues

    Energy Technology Data Exchange (ETDEWEB)

    Leszczynski, Jerzy [Computational Center for Molecular Structure and Interactions, Jackson, MS; Sponer, Judit [Academy of Sciences of the Czech Republic; Sponer, Jiri [Academy of Sciences of the Czech Republic; Sumpter, Bobby G [ORNL; Fuentes-Cabrera, Miguel A [ORNL; Vazquez-Mayagoitia, Alvaro [ORNL

    2010-01-01

    Recent experimental studies on the Watson Crick type base pairing of triazine and aminopyrimidine derivatives suggest that acid/base properties of the constituent bases might be related to the duplex stabilities measured in solution. Herein we use high-level quantum chemical calculations and molecular dynamics simulations to evaluate the base pairing and stacking interactions of seven selected base pairs, which are common in that they are stabilized by two NH O hydrogen bonds separated by one NH N hydrogen bond. We show that neither the base pairing nor the base stacking interaction energies correlate with the reported pKa data of the bases and the melting points of the duplexes. This suggests that the experimentally observed correlation between the melting point data of the duplexes and the pKa values of the constituent bases is not rooted in the intrinsic base pairing and stacking properties. The physical chemistry origin of the observed experimental correlation thus remains unexplained and requires further investigations. In addition, since our calculations are carried out with extrapolation to the complete basis set of atomic orbitals and with inclusion of higher electron correlation effects, they provide reference data for stacking and base pairing energies of non-natural bases.

  20. Identification of molecular crystals capable of undergoing an acyl-transfer reaction based on intermolecular interactions in the crystal lattice.

    Science.gov (United States)

    Tamboli, Majid I; Krishnaswamy, Shobhana; Gonnade, Rajesh G; Shashidhar, Mysore S

    2013-09-16

    Investigation of the intermolecular acyl-transfer reactivity in molecular crystals of myo-inositol orthoester derivatives and its correlation with crystal structures enabled us to identify the essential parameters to support efficient acyl-transfer reactions in crystals: 1)?the favorable geometry of the nucleophile (-OH) and the electrophile (C-O) and 2)?the molecular assembly, reinforced by C-H???? interactions, which supports a domino-type reaction in crystals. These parameters were used to identify another reactive crystal through a data-mining study of the Cambridge Structural Database. A 2:1 co-crystal of 2,3-naphthalene diol and its di-p-methylbenzoate was selected as a potentially reactive crystal and its reactivity was tested by heating the co-crystals in the presence of solid sodium carbonate. A facile intermolecular p-toluoyl group transfer was observed as predicted. The successful identification of reactive crystals opens up a new method for the detection of molecular crystals capable of exhibiting acyl-transfer reactivity. PMID:23934729

  1. Intermolecular C–H?O interactions in cyclopentanone: An inelastic neutron scattering study

    Energy Technology Data Exchange (ETDEWEB)

    Vaz, Pedro D., E-mail: pmvaz@fc.ul.pt [CQB, Department of Chemistry and Biochemistry, Faculty of Science, University of Lisbon, 1749-016 Lisbon (Portugal); Nolasco, Mariela M. [Departamento de Química – CICECO, Universidade de Aveiro, P-3810-193 Aveiro (Portugal); Ribeiro-Claro, Paulo J.A., E-mail: prc@ua.pt [Departamento de Química – CICECO, Universidade de Aveiro, P-3810-193 Aveiro (Portugal)

    2013-12-12

    Highlights: • The inelastic neutron spectrum of cyclopentanone was obtained. • The neutron spectrum of the pure compound reveals presence of C–H?O hydrogen bonds. • Almost exact match between simulated C–H?O bonded dimer and experimental spectra. • Anti-translational ?H?O mode assigned to band at 95 cm{sup ?1} and confirmed by DFT results. - Abstract: The inelastic neutron scattering (INS) spectra of cyclopentanone were obtained for pure and 50% CCl{sub 4} solution forms. Spectra are compared with infrared and Raman data, and with DFT calculated eigenvectors. This exercise aims to find spectroscopic evidence in the neutron spectra for the presence of C–H?O hydrogen bonds. These are weak interactions with an energy of ca. ?6 kJ mol{sup ?1} as predicted by DFT. The neutron spectra show narrow and sharp bands which allows for an assignment of the vibrational modes. The simulated neutron spectrum of C–H?O bonded cyclopentanone dimers matches the experimental spectrum of the pure compound, whereas the monomer simulation monomer matches the experimental spectrum of the diluted solution, meaning that such interaction can be probed by INS. Assignment of the 95 cm{sup ?1} band to the ?H?O anti-translational mode, being supported by DFT results and in agreement with previous literature data, is considered and discussed.

  2. New aspects of weak C?H⋯? bonds: intermolecular interactions between alicyclic and aromatic rings in crystals of small compounds, peptides and proteins

    Science.gov (United States)

    Ciunik, Z.; Berski, S.; Latajka, Z.; Leszczy?ski, J.

    1998-02-01

    The geometry of intermolecular contacts between alicyclic and aromatic rings in a number of crystal structures suggests an attractive interaction between the rings. An analysis of molecular packing of 444 different crystal structures collected in the Cambridge Structural Database shows that phenyl…cyclohexanonyl, cyclohexyl, and/or cyclopentyl ring interactions occur in 59-82% of studied crystals. Similar interactions are observed between aromatic rings and heterocyclic pyrrolidine rings of proline in peptides and proteins. An analysis of data collected in the Brookhaven Protein Data Bank reveals that interactions between proline C?H groups and aromatic rings of phenylalanine, tyrosine, and tryptophan as acceptors are frequently observed in proteins. Based on these results, several geometric models of these interactions are proposed. Two of these models are fully optimized using quantum chemical calculations at the density functional theory level. Calculated energies suggest that the most important interaction between the cyclohexanone and benzene rings is described by the face-to-face model, in which three axial hydrogen atoms are directed toward the aromatic partner.

  3. Intermolecular interactions and thermodynamic properties of 3,6-diamino-1,2,4,5-tetrazine-1,4-dioxide dimers: A density functional theoretical study

    Scientific Electronic Library Online (English)

    Ning Ning, Zhao; Ya Ling, Zhao; Yin, Hu; Hai Xia, Ma; Feng Qi, Zhao; Ji Rong, Song.

    2013-08-01

    Full Text Available Three fully optimized structures of 3,6-diamino-1,2,4,5-tetrazine-1,4-dioxide (LAX-112) dimers have been obtained with the density functional theory (DFT) method at the B3LYP/6-311++G level. Vibrational frequency calculations were carried out to ascertain that each structure is a minimum (no imagina [...] ry frequencies). The intermolecular interaction energy is calculated with the basis set superposition error (BSSE) correction and zero point energy (ZPE) correction. The greatest corrected binding energy among the three dimers is -42.38 kJ mol-1. The charge redistribution mainly occurs on the adjacent O(N)......H atoms between submolecules and the charge transfer between two subsystems is very small. Natural bond orbital (NBO) analysis was performed to reveal the origin of the interaction. Based on the vibrational analysis, the standard thermodynamic functions (heat capacities (cºp), entropies (S°m) and enthalpies (H°m)) and the changes of thermodynamic properties from the monomer to dimer with the temperature ranging from 200.00 K to 800.00 K have been obtained using statistical thermodynamics. The results show that the strong hydrogen bonds dominantly contribute to the dimers, while the bonding energies are not only determined by the hydrogen bonding. The dimerization process of dimer II can occur spontaneously at room temperature.

  4. Study of intermolecular interactions in binary mixtures of 2-(dimethylamino)ethanol with methanol and ethanol at various temperatures

    International Nuclear Information System (INIS)

    Graphical abstract: The densities and ultrasonic speeds of the binary mixtures over the entire composition range were measured at various temperatures at atmospheric pressure. The excess molar volumes, isentropic compressibilities, and molar isentropic compressions have been calculated. The variations of these parameters with composition and temperature are discussed. The IR spectra were recorded they further supported the conclusion drawn from excess parameters, which indicates the presence of intermolecular hydrogen bonding between the oxygen atom of DMAE molecules and hydrogen atom of methanol and ethanol molecules in these mixtures.. - Highlights: • The study reports density and ultrasonic velocity data of 2-(dimethylamino)ethanol + methanol/ethanol mixtures. • To elucidate the interactions in 2-(dimethylamino)ethanol + methanol/ethanol binary mixtures. • Provides information on nature and relative strength of interactions in these mixtures. • Correlates physicochemical properties with interactions in these mixtures. - Abstract: The densities, ρ and ultrasonic speeds, u of the binary mixtures of 2-(dimethylamino)ethanol (DMAE) with methanol/ethanol, including those of pure liquids, over the entire composition range were measured at 298.15, 308.15 and 318.15 K. From the experimental data, the excess molar volumes, VmE and excess isentropic compressibilities, κsE have been calculated. The excess partial molar volumes, V¯m,1E and V¯m,2E and excess partial molar isentropic compressions, K¯s,m,1E and K¯s,m,2E over the whole composition range; and partial molar volumes, V¯m,1° and V¯m,2°, partial molar isentropic compressions, K¯s,m,1° and K¯s,m,2°, excess partial molar volumes, V¯m,1°E and V¯m,2°E, and excess partial molar isentropic compressions, K¯s,m,1°E and K¯s,m,2°E at infinite dilution have also been calculated. The variations of these parameters with composition and temperature are discussed in terms of intermolecular interactions. The IR spectra of these mixtures have also been recorded at 298.15 K

  5. Oligophenylenevinylenes in spatially confined nanochannels: Monitoring intermolecular interactions by UV/Vis and Raman spectroscopy

    DEFF Research Database (Denmark)

    Aloshyna, Mariya; Medina, Begona Milian; Poulsen, Lars; Moreau, Juliette; Beljonne, David; Cornil, Jerome; Silvestro, Giuseppe Di; Cerminara, Michele; Meinardi, Francesco; Tubino, Riccardo; Detert, Heiner; Schrader, Sigurd; Egelhaaf, Hans-Joachim; Botta, Chiara; Gierschner, Johannes

    2008-01-01

    Perhydrotriphenylene-based channel-forming inclusion compounds (ICs) and thin films made of polyphenylenevinylene (PPV)-type oligomers with terminal alkoxy groups are investigated and compared in a combined experimental and theoretical approach. Interchromophore interactions and host-guest interactions are elucidated by UV/Vis and Raman spectroscopy. The impact of the local environment of the chromophore on the optical and photophysical properties is discussed in light of quantum-chemical calcul...

  6. Studies of intermolecular interactions in solid dispersions using advanced surface chemical analysis

    OpenAIRE

    Maniruzzaman, M.; Snowden, Martin J; Bradely, Mike S; Douroumis, D.

    2015-01-01

    The aim of this study is to utilise an advanced surface chemical analysis based on X-ray photoelectron spectroscopy (XPS) to determine and characterise drug/polymer interactions in solid dispersions manufactured via hot melt extrusion (HME). Cetirizine HCl (CTZ) and verapamil HCl (VRP) were used as model cationic drugs while Eudragit® grade L100 and L100-55 polymers were used as anionic carriers. A molecular dynamics (MD) based simulation approach predicted drug/polymer interactions while sca...

  7. Prediction of polymer mixture compatibility by Monte Carlo simulation of intermolecular binary interactions

    OpenAIRE

    Ahmadi, Amirhossein; Freire, Juan J

    2009-01-01

    We have evaluated conformational and orientational averages of binary interaction integrals for pairs of chains constituting atomistic representations of short polymer molecules. By considering A-A, B-B and A-B pairs, we relate these results with the Flory-Huggins parameter for the A-B mixtures. This parameter is commonly accepted as a good indicator of compatibility. Since the method ignores the simultaneous interactions with other molecules in the mixture, the local enviro...

  8. Application of T1 relaxation times to studies of intermolecular interactions between Cr/AcAc/3 and 31P atom in ethyl esters of phosphor acids

    International Nuclear Information System (INIS)

    The measurements of relaxation times were carried out on BROKER HX-72 spectrometer at resonance frequency of 31P nucleus 36.43 MHz. The theory Gierer-Wirtz was used to quantitative description of intermolecular dipole interactions between model phosphor compounds and Cr/AcAc/3. The results were elaborated by the least square method using NICOLET minicomputer. (A.S.)

  9. Intermolecular spectroscopy of gases

    International Nuclear Information System (INIS)

    Spectroscopic techniques have been very successfully applied to the study of individual molecules. The same techniques can also be used to investigate intermolecular interactions. Collision-induced absorption (CIA) and collision-induced light scattering (CILS) are important examples of intermolecular interactions. These effects can be described by the dynamical information contained in the general intermolecular correlation functions. One of the aims of this review is to stress the central role of these correlation functions in the field of intermolecular spectroscopy. Because they have a well-defined physical meaning, they are very suitable for the purpose of introducing new physical approximations, particularly in the case of liquids. Some aspects of the theory of CIA will be discussed, mainly as applied to gases. References to similar situations in CILS will occasionally be made, but no comprehensive review will be attempted. One of the basic quantities in CIA is the absorption coefficient. The question is investigated wether it can be expanded in powers of the density. Finally, the moments of the spectrum, interference effects and line shapes are discussed. (KBE)

  10. Synthesis and description of intermolecular interactions in new sulfonamide derivatives of tranexamic acid

    Science.gov (United States)

    Ashfaq, Muhammad; Arshad, Muhammad Nadeem; Danish, Muhammad; Asiri, Abdullah M.; Khatoon, Sadia; Mustafa, Ghulam; Zolotarev, Pavel N.; Butt, Rabia Ayub; Şahin, Onur

    2016-01-01

    Tranexamic acid (4-aminomethyl-cyclohexanecarboxylic acid) was reacted with sulfonyl chlorides to produce structurally related four sulfonamide derivatives using simple and environmental friendly method to check out their three-dimensional behavior and van der Walls interactions. The molecules were crystallized in different possibilities, as it is/after alkylation at its O and N atoms/along with a co-molecule. All molecules were crystallized in monoclinic crystal system with space group P21/n, P21/c and P21/a. X-ray studies reveal that the molecules stabilized themselves by different kinds of hydrogen bonding interactions. The molecules are getting connected through O-H⋯O hydrogen bonds to form inversion dimers which are further connected through N-H⋯O interactions. The molecules in which N and O atoms were alkylated showed non-classical interaction and generated centro-symmetric R22(24) ring motif. The co-crystallized host and guest molecules are connected to each other via O-H⋯O interactions to generate different ring motifs. By means of the ToposPro software an analysis of the topologies of underlying nets that correspond to molecular packings and hydrogen-bonded networks in structures under consideration was carried out.

  11. Small-angle X-ray scattering probe of intermolecular interaction in red blood cells

    Science.gov (United States)

    Liu, Guan-Fen; Wang, We-Jia; Xu, Jia-Hua; Dong, Yu-Hui

    2015-03-01

    With high concentrations of hemoglobin (Hb) in red blood cells, self-interactions among these molecules could increase the propensities of their polymerization and aggregation. In the present work, high concentration Hb in solution and red blood cells were analyzed by small-angle X-ray scattering. Calculation of the effective structure factor indicates that the interaction of Hb molecules is the same when they are crowded together in both the cell and physiological saline. The Hb molecules stay individual without the formation of aggregates and clusters in cells. Supported by National Basic Research Program of China (2009CB918600) and National Natural Science Foundation of China (10979005)

  12. Intermolecular interactions in aniline benzene hetero-trimer and aniline homo-trimer ions

    Science.gov (United States)

    Ohashi, Kazuhiko; Inokuchi, Yoshiya; Nishi, Nobuyuki; Sekiya, Hiroshi

    2002-05-01

    The charge distribution and binding features of aniline-benzene hetero-trimer and aniline homo-trimer ions are investigated by vibrational spectroscopy and by near-infrared photodissociation and spontaneous unimolecular dissociation of mass-selected cluster ions. The absence of the charge resonance absorption indicates the charge localization in the trimer ions. Substantial red-shifts and enhanced intensities of the vibrational transitions suggest strong perturbations to the NH oscillators. The trimer ions are stabilized by the hydrogen-bonding interaction through the NH 2 group of the charged aniline with the neutral molecules rather than the charge-delocalization interaction among the component molecules.

  13. 12C/13C and H/D vapor pressure isotope effects of fluoroform: intermolecular interactions in liquid fluoroform

    International Nuclear Information System (INIS)

    A precision cryostat of the Bigeleisen-Brooks-Ribnikar-Ishida (BBIR) type with associated vacuum systems has been constructed and the appropriate temperature/pressure measurement and control systems designed and implemented. Various improvements in the cryostat design were incorporated in order to facilitate the assembly and repair processes. A major design change involved the incorporation of a digital stand alone computer to control cryostat operations. This apparatus was used to measure the 12C/13C and H/D Vapor Pressure Isotope Effects of Fluoroform. Analysis of the measured VPIE results, in light of existing experimental data and theories, has demonstrated the need of a temperature dependent liquid force field, specifically a temperature-dependent interaction force constant between the C-H stretching motion and translational motion in the direction of the figure axis of CHF3. This result is consistent with the observed spectroscopic data and vibrational and configurational models of fluoroform dimers. The intermolecular interaction is believed to be a weak hydrogen-bond in nature

  14. Determination of stepsize parameters for intermolecular vibrational energy transfer: Progress report, May 1, 1987-April 30, 1988

    International Nuclear Information System (INIS)

    Intermolecular vibrational energy transfer for highly excited polyatomic molecules is involved in any mechanism in which excitation energy is required (pyrolysis) or in which energy must be removed from a hot source (cooling). The average energy removed per collision, , is a useful quantity to compare efficiency for energy transfer. The objectives of this work are: to determine the dependence of on excitation energy and on the molecular complexity (number of vibrational modes) of substrate and deactivator; to assess the importance of intermolecular attractions (complex formation) on vibrational energy transfer; to obtain detailed information on the energy distribution after collision and to evaluate the importance of on high-temperature unimolecular reactions. This information will be obtained by monitoring the time dependence of the infrared emission, ultraviolet absorption, refractive index and pressure. The results from these complementary techniques will be benchmarked with values from previous studies on the relaxation of chemically activated alkyl and fluoroalkyl radicals. Trajectory calculations simulating energy transfer are being performed for ''generic'' substrate/deactivator pairs to provide additional details and insight on the important parameters. Model calculations are also being performed to determine the feasibility of obtaining information from experimental data for high-temperature unimolecular reactions

  15. Redetermined structure of diphenylphosphonimidotriphenylphosphorane: location of the hydrogen atoms and analysis of the intermolecular interactions

    Directory of Open Access Journals (Sweden)

    Richard Betz

    2011-05-01

    Full Text Available The title compound, C30H25NOP2, is a bulky phosphazene derivative. Its previous crystal structure [Cameron et al. (1979. Acta Cryst. B35, 1373–1377] is confirmed and its H atoms have been located in the present study. The formal P=N double bond is about 0.05?Å shorter than the P—N single bond and the large P=N—P bond angle reflects the steric strain in the molecule. An intramolecular C—H...O interaction occurs. In the crystal, short C—H...O contacts connect the molecules into chains propagating in [011], which are cross-linked via C—H...? interactions, generating a three-dimensional network. Aromatic ?–? stacking also occurs [shortest centroid–centroid separation = 3.6012?(11?Å].

  16. Co-amorphous simvastatin and glipizide combinations show improved physical stability without evidence of intermolecular interactions

    DEFF Research Database (Denmark)

    Löbmann, Korbinian; Strachan, Clare; Grohganz, Holger; Rades, Thomas; Korhonen, Ossi; Laitinen, Riikka

    2012-01-01

    The objective of this study was to prepare a co-amorphous drug/drug combination between two BCS class II drugs, simvastatin (SVS) and glipizide (GPZ). This pharmacologically relevant combination of two drugs could produce a promising candidate for formulations intended for combination therapy of...... metabolic disorders. The co-amorphous SVS-GPZ mixtures (molar ratios 2:1, 1:1 and 1:2) were prepared by mechanical activation (ball milling or cryomilling) and characterized with respect to their thermal properties, possible molecular interactions, dissolution properties and physical stability, and compared...... to the behaviour of pure amorphous forms and their physical mixtures. It was found that even though a molecular mixture was achieved with all SVS-GPZ mixture ratios, no molecular interactions between the drugs could be detected. By formation of co-amorphous single-phase mixtures, only the dissolution...

  17. Tuning of intermolecular interactions results in packing diversity in imidazolin-5-ones

    Indian Academy of Sciences (India)

    Ashish Singh; Basanta Kumar Rajbongshi; Gurunath Ramanathan

    2014-09-01

    Crystal structures of four green fluorescent protein (GFP) chromophore analogues with different packing interactions could be tuned by appropriate substitutions around the imidazolin-5-one ring are reported here. Compound 1 was crystallized from tetrahydrofuran at room temperature while compounds 2-4 have been crystallized from a mixture of methanol and dichloromethane in 3:1 ratio. Molecule 1, 2 and 3 crystallized in monoclinic lattice while molecule 4 preferred to crystallize in a triclinic crystal system. The crystal packing of these molecules was stabilized by C-H$\\ldots$ stacking and C-H $\\ldots$ O type of supramolecular interactions. The results reveal that packing diversity can be easily accomplished in these molecules by tuning the substituents around the imidazolin-5-one ring. Photophysical studies also reveal that all have good quantum yield and fluoresce typically in red region due to presence of electron donating groups around the imidazolin-5-one ring.

  18. Oligophenylenevinylenes in spatially confined nanochannels: Monitoring intermolecular interactions by UV/Vis and Raman spectroscopy

    DEFF Research Database (Denmark)

    Aloshyna, Mariya; Medina, Begona Milian

    2008-01-01

    Perhydrotriphenylene-based channel-forming inclusion compounds (ICs) and thin films made of polyphenylenevinylene (PPV)-type oligomers with terminal alkoxy groups are investigated and compared in a combined experimental and theoretical approach. Interchromophore interactions and host-guest interactions are elucidated by UV/Vis and Raman spectroscopy. The impact of the local environment of the chromophore on the optical and photophysical properties is discussed in light of quantum-chemical calculations. In stark contrast to thin films where preferential side-by-side orientation leads to quenching of photoluminescence (PL) via non-emissive traps, the ICs are found to be attractive materials for opto-electronic applications: they offer high chromophore concentrations, but at the same time behave as quasi-isolated entities of tightly packed, well-oriented objects with high PL quantum yields and the possibility of color tuning.

  19. Macrocyclic ?-Sheet Peptides that Mimic Protein Quaternary Structure through Intermolecular ?-Sheet Interactions

    OpenAIRE

    Khakshoor, Omid; Demeler, Borries; Nowick, James S.

    2007-01-01

    This paper reports the design, synthesis, and characterization of a family of cyclic peptides that mimic protein quaternary structure through ?-sheet interactions. These peptides are 54-membered-ring macrocycles comprising an extended heptapeptide ?-strand, two Hao ?-strand mimics [JACS 2000, 122, 7654] joined by one additional ?-amino acid, and two ?-linked ornithine ?-turn mimics [JACS 2003, 125, 876]. Peptide 3a, as the representative of these cyclic peptides, contains a heptapeptide seque...

  20. De novo design of protein-protein interactions through modification of inter-molecular helix-helix interface residues.

    Science.gov (United States)

    Yagi, Sota; Akanuma, Satoshi; Yamagishi, Manami; Uchida, Tatsuya; Yamagishi, Akihiko

    2016-05-01

    For de novo design of protein-protein interactions (PPIs), information on the shape and chemical complementarity of their interfaces is generally required. Recent advances in computational PPI design have allowed for de novo design of protein complexes, and several successful examples have been reported. In addition, a simple and easy-to-use approach has also been reported that arranges leucines on a solvent-accessible region of an α-helix and places charged residues around the leucine patch to induce interactions between the two helical peptides. For this study, we adopted this approach to de novo design a new PPI between the helical bundle proteins sulerythrin and LARFH. A non-polar patch was created on an α-helix of LARFH around which arginine residues were introduced to retain its solubility. The strongest interaction found was for the LARFH variant cysLARFH-IV-3L3R and the sulerythrin mutant 6L6D (KD=0.16μM). This artificial protein complex is maintained by hydrophobic and ionic interactions formed by the inter-molecular helical bundle structure. Therefore, by the simple and easy-to-use approach to create de novo interfaces on the α-helices, we successfully generated an artificial PPI. We also created a second LARFH variant with the non-polar patch surrounded by positively charged residues at each end. Upon mixing this LARFH variant with 6L6D, mesh-like fibrous nanostructures were observed by atomic force microscopy. Our method may, therefore, also be applicable to the de novo design of protein nanostructures. PMID:26867971

  1. The effect of intermolecular interactions on the electric dipole polarizabilities of nucleic acid base complexes

    Science.gov (United States)

    Czy?nikowska, ?aneta; Góra, Robert W.; Zale?ny, Robert; Bartkowiak, Wojciech; Baranowska-??czkowska, Angelika; Leszczynski, Jerzy

    2013-01-01

    In this Letter, we report on the interaction-induced electric dipole polarizabilities of 70 Watson-Crick B-DNA pairs (27 adenine-thymine and 43 guanine-cytosine complexes) and 38 structures of cytosine dimer in stacked alignment. In the case of hydrogen-bonded Watson-Crick base pairs the electrostatic as well as the induction and exchange-induction interactions, increase the average polarizability of the studied complexes, whereas the exchange-repulsion effects have the opposite effect and consistently diminish this property. On the other hand, in the case of the studied cytosine dimers in stacked alignment the dominant electrostatic contribution has generally much larger magnitude and the opposite sign, resulting in a significant reduction of the average polarizability of these complexes. As a part of this model study, we also assess the performance of recently developed LPol-ds reduced-size polarized basis set. Although being much smaller than the aug-cc-pVTZ set, the LPol-ds performs equally well as far as the excess polarizabilities of the studied hydrogen-bonded complexes are concerned.

  2. Gibb's energy and intermolecular free length of 'Borassus Flabellifier' (BF) and Adansonia digitata (AnD) aqueous binary mixture

    International Nuclear Information System (INIS)

    One of the potential driving forces behind a chemical reaction is favourable a new quantity known as the Gibbs free energy (G) of the system, which reflects the balance between these forces. Ultrasonic velocity and absorption measurements in liquids and liquid mixtures find extensive application to study the nature of intermolecular forces. Ultrasonic velocity measurements have been successfully employed to detect weak and strong molecular interactions present in binary and ternary liquid mixtures. After measuring the density and ultrasonic velocity of aqueous solution of 'Borassus Flabellifier' BF and Adansonia digitata And, we calculated Gibb's energy and intermolecular free length. The velocity of ultrasonic waves was measured, using a multi-frequency ultrasonic interferometer with a high degree of accuracy operating Model M-84 by M/s Mittal Enterprises, New Delhi, at a fixed frequency of 2 MHz. Natural sample 'Borassus Flabellifier' BF fruit pulp and Adansonia digitata AnD powder was collected from Dhar, District of MP, India for this study.

  3. Carbon dioxide clathrate hydrates: selective role of intermolecular interactions and action of the SDS catalyst.

    Science.gov (United States)

    Albertí, M; Pirani, F; Laganà, A

    2013-08-15

    The ability of a single sodium dodecyl sulfate (SDS) molecule to promote the formation of CO2 clathrate hydrates in water (as it does for methane) has been investigated at the microscopic level. For this purpose, the components of the related force field were carefully formulated and assembled following the procedure previously adopted for methane. The properties of the whole system (as well as those of its components) were analyzed by carrying out extended molecular dynamics calculations. Contrary to what happens for methane, the calculations singled out the propensity of CO2 (pure) water clusters to form clathrate hydrate-like structures and the disappearance of such propensity when a single SDS molecule is added to the clusters. This feature was found to be due to the strong interaction of carbon dioxide with the additive that makes the SDS molecule lose its shape together with its ability to drive water molecules to form a suitable cage. PMID:23635031

  4. Investigation of intermolecular interactions in finasteride drug crystals in view of X-ray and Hirshfeld surface analysis

    Science.gov (United States)

    Bojarska, Joanna; Maniukiewicz, Waldemar

    2015-11-01

    The N,N-dimethylformamide (DMF) solvate hemihydrate (1) of finasteride, has been structurally characterized by single-crystal X-ray diffraction at 100 K and compared with previously reported finasteride crystalline forms. In addition, in order to resolve ambiguity concerning H-bond interactions, the crystal structure of finasteride hemihydrate, (2), originally reported by Schultheiss et al. in 2009, has been redetermined with higher precision. The (1) and (2) pseudopolymorphs of finasteride crystallize as orthorhombic in chiral P212121 space group with two very similar host molecules in the asymmetric unit. The conformation of fused 6-membered rings are screw-boat, chair and chair for both molecules, while 5-membered rings assume chair in (1), and half-chair in (2). There is a fairly close resemblance of the molecular geometry for all analyzed compounds, arising due to the rigid host molecule. Inter- and intramolecular host-host, host-guest strong O-H⋯O, N-H⋯O hydrogen bonds and weak C-H⋯O interactions form 3D net conferring stability to the crystal packing. Finasterides can be classified as synthon pseudopolymorphs. Isostructural solvates crystallizing in the orthorhombic space group P212121, with Z? = 2, exhibit R22(8) C22(15) network, monoclinic solvate (Z? = 1) possess D11(2), while both orthorhombic and monoclinic polymorphs have C(4) motifs, respectively. The structural similarities and subtle differences have been interpreted in view of the 3D Hirshfeld surface analysis and associated 2D fingerprint plots, which enabled detailed qualitative and quantitative insight into the intermolecular interactions. The 97-100% of Hirshfeld surface areas are due to H···H, O···H/H⋯O, C···H/H⋯C and N⋯H/H⋯N contacts. Furthermore, the electrostatic potential has been mapped over the Hirshfeld surfaces to decode the electrostatic complementarities, which exist in the crystal packing.

  5. Intermolecular interaction between Cry2Aa and Cyt1Aa and its effect on larvicidal activity against Culex quinquefasciatus.

    Science.gov (United States)

    Bideshi, Dennis K; Waldrop, Greer; Fernandez-Luna, Maria Teresa; Diaz-Mendoza, Mercedes; Wirth, Margaret C; Johnson, Jeffrey J; Park, Hyun-Woo; Federici, Brian A

    2013-08-01

    The Cyt1Aa protein of Bacillus thuringiensis susbp. israelensis elaborates demonstrable toxicity to mosquito larvae, but more importantly, it enhances the larvicidal activity of this species Cry proteins (Cry11Aa, Cry4Aa, and Cry4Ba) and delays the phenotypic expression of resistance to these that has evolved in Culex quinquefasciatus. It is also known that Cyt1Aa, which is highly lipophilic, synergizes Cry11Aa by functioning as a surrogate membrane-bound receptor for the latter protein. Little is known, however, about whether Cyt1Aa can interact similarly with other Cry proteins not primarily mosquitocidal; for example, Cry2Aa, which is active against lepidopteran larvae, but essentially inactive or has very low toxicity to mosquito larvae. Here we demonstrate by ligand binding and enzyme-linked immunosorbent assays that Cyt1Aa and Cry2Aa form intermolecular complexes in vitro, and in addition show that Cyt1Aa facilitates binding of Cry2Aa throughout the midgut of C. quinquefasciatus larvae. As Cry2Aa and Cry11Aa share structural similarity in domain II, the interaction between Cyt1Aa and Cry2Aa could be a result of a similar mechanism previously proposed for Cry11Aa and Cyt1Aa. Finally, despite the observed interaction between Cry2Aa and Cyt1Aa, only a 2-fold enhancement in toxicity resulted against C. quinquefasciatus. Regardless, our results suggest that Cry2Aa could be a useful component of mosquitocidal endotoxin complements being developed for recombinant strains of B. thuringiensis subsp. israelensis and B. sphaericus aimed at improving the efficacy of commercial products and avoiding resistance. PMID:23727800

  6. Solid-State [2+2] Photodimerization and Photopolymerization of ?,?-Diarylpolyene Monomers: Effective Utilization of Noncovalent Intermolecular Interactions in Crystals

    Directory of Open Access Journals (Sweden)

    Yoriko Sonoda

    2010-12-01

    Full Text Available [2+2] Photocycloaddition of olefins is a very useful reaction in synthetic organic chemistry to obtain cyclobutane-containing molecules, which are almost inaccessible by other methods. The reaction, when performed in the crystalline state, occurs more efficiently and selectively than in homogeneous solution due to tight and regular molecular arrangement in the crystal state. Despite numerous examples for the solid-state [2+2] photodimerization of monoenes, however, it is still a challenge to prepare not only dimers but also higher oligomers and polymers from conjugated polyenes, which have multiple reactive double bonds in a molecule. In our recent studies of the solid-state photoreactions of ?,?-diarylpolyenes, noncovalent intermolecular interactions in crystals were effectively utilized to prealign molecules in stacking arrangements, suitable for the [2+2] reaction. With appropriate ring-substituents, [2+2] photodimerization and photopolymerization of the polyenes took place, although the degree of polymerization was relatively low. This review will describe the details of these reactions.

  7. Fabrication and Intermolecular Interactions of Silk Fibroin/Hydroxybutyl Chitosan Blended Nanofibers

    Directory of Open Access Journals (Sweden)

    Xiu-Mei Mo

    2011-03-01

    Full Text Available The native extracellular matrix (ECM is composed of a cross-linked porous network of multifibril collagens and glycosaminoglycans. Nanofibrous scaffolds of silk fibroin (SF and hydroxybutyl chitosan (HBC blends were fabricated using 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP and trifluoroacetic acid (TFA as solvents to biomimic the native ECM via electrospinning. Scanning electronic microscope (SEM showed that relatively uniform nanofibers could be obtained when 12% SF was blended with 6% HBC at the weight ratio of 50:50. Meanwhile, the average nanofibrous diameter increased when the content of HBC in SF/HBC blends was raised from 20% to 100%. Fourier transform infrared spectra (FTIR and 13C nuclear magnetic resonance (NMR showed SF and HBC molecules existed in hydrogen bonding interactions but HBC did not induce conformation of SF transforming from random coil form to β-sheet structure. X-ray diffraction (XRD confirmed the different structure of SF/HBC blended nanofibers from both SF and HBC. Thermogravimetry-Differential thermogravimetry (TG-DTG results demonstrated that the thermal stability of SF/HBC blend nanofibrous scaffolds was improved. The results indicated that the rearrangement of HBC and SF molecular chain formed a new structure due to stronger hydrogen bonding between SF and HBC. These electrospun SF/HBC blended nanofibers may provide an ideal tissue engineering scaffold and wound dressing.

  8. Intermolecular interactions of proton transfer compounds: synthesis, crystal structure and Hirshfeld surface analysis.

    Science.gov (United States)

    Direm, Amani; Altomare, Angela; Moliterni, Anna; Benali-Cherif, Nourredine

    2015-08-01

    Three new proton transfer compounds, [2-ammonio-5-methylcarboxybenzene perchlorate (1), (C8H10NO2(+)·ClO4(-)), 4-(ammoniomethyl)carboxybenzene nitrate (2), (C8H10NO2(+)·NO3(-)), and 4-(ammoniomethyl)carboxybenzene perchlorate (3), (C8H10NO2(+)·ClO4(-))], have been synthesized, their IR modes of vibrations have been assigned and their crystal structures studied by means of single-crystal X-ray diffraction. Their asymmetric units consist of one cation and one anion for both compounds (1) and (2). However, the crystal structure of compound (3) is based on a pair of cations and a pair of anions in its asymmetric unit. The three-dimensional Hirshfeld surface analysis and the two-dimensional fingerprint maps revealed that the three structures are dominated by H...O/O...H and H...H contacts. The strongest hydrogen-bonding interactions are associated with O-H...O and N-H...O constituting the highest fraction of approximately 50%, followed by those of the H...H type contributing 20%. Other close contacts are also present, including weak C...H/H...C contacts (with about 10%). PMID:26208623

  9. Benchmark Calculations of Three-Body Intermolecular Interactions and the Performance of Low-Cost Electronic Structure Methods.

    Czech Academy of Sciences Publication Activity Database

    ?ezá?, Jan; Huang, Y.; Hobza, Pavel; Beran, G. J. O.

    2015-01-01

    Ro?. 11, ?. 7 (2015), s. 3065-3079. ISSN 1549-9618 R&D Projects: GA ?R GP13-01214P; GA ?R GBP208/12/G016 Institutional support: RVO:61388963 Keywords : density functional theory * Plesset perturbation theory * noncovalent interactions * interaction energies Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 5.498, year: 2014

  10. Synthesis, X-Ray Structure, Magnetic Properties, and a Study of Intra/Intermolecular Radical-Radical Interactions of a Triradical TEMPO Compound.

    Science.gov (United States)

    Lloveras, Vega; Badetti, Elena; Wurst, Klaus; Vidal-Gancedo, José

    2015-10-01

    A novel triradical compound with a P=S core and three branches functionalized with 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) radicals is synthesized and characterized by IR, (1) H?NMR, (31) P?NMR, and EPR spectroscopy and MALDI-TOF mass spectrometry, and its chemical structure is confirmed by X-ray diffraction analysis. The triradical shows neither spin exchange interactions between its radical units nor detectable dipolar interactions. This is consistent with the separation between the radical units found in its X-ray diffraction structure, and discounts the existence of intramolecular interactions. This conclusion is confirmed by an EPR concentration study. The concentration at which intermolecular interactions start to appear is determined (5×10(-3) ?m) and this concentration should be taken into account as a higher concentration limit when studies on intramolecular radical-radical interactions in polyradicals with similar structure are required. SQUID magnetometry analysis of the compound shows antiferromagnetic interactions between the spin carriers of different molecules; that is, antiferromagnetic intermolecular interactions. PMID:26489060

  11. Design, synthesis, and optoelectronic properties of dendrimeric Pt(II) complexes and their ability to inhibit intermolecular interaction.

    Science.gov (United States)

    Li, Hui; Li, Jing; Ding, Junqiao; Yuan, Wei; Zhang, Zilong; Zou, Luyi; Wang, Xingdong; Zhan, Hongmei; Xie, Zhiyuan; Cheng, Yanxiang; Wang, Lixiang

    2014-01-21

    Dendrimeric Pt(II) complexes [(C(?)N)Pt(dpm)] and [Pt(C(?)N)2] (Hdpm = dipivaloylmethane, HC(?)N = 1,2-diphenylbenzoimidazole and its derivatives containing the carbazole dendrons) have been synthesized and characterized systematically. All of the complexes display green emission in the range of 495-535 nm that originated from the 360-440 nm absorption bands, which are assigned to d?(Pt)??*(L) metal-to-ligand charge transfer (MLCT) mixed with intraligand ?(L)??*(L) transition. Solution photoluminescence quantum yield (?p 0.26-0.31) of the heteroleptic complexes [(C(?)N)Pt(dpm)] obviously increases when compared with that of complex [(C(?)N)Pt(acac)]. Organic light-emitting diode devices based on these Pt(II) complexes with a multilayer configuration were fabricated and gave desirable electroluminescent (EL) performances, such as non- or less red-shifted EL spectra, in comparison with the photoluminescence spectra and slow efficiency roll-off with increasing brightness or current density. Complex [(t-BuCzCzPBI)Pt(dpm)] (where t-BuCzCzPBI = 1-(4-(3,6-di-(3,6-di-t-butyl-carbazol-9-yl))carbazol-9-yl)phenyl-2-phenylbenzoimidazole) showed the best performance, with a maximum current efficiency of 29.31 cd/A and a maximum external quantum efficiency (EQE) of 9.04% among the fabricated devices. Likewise, for homoleptic [Pt(t-BuCzCzPBI)2] dendrimer, the powder ?p (0.14) and maximum EQE (0.74%) improve by 7 and 7.4 times, respectively, as high as they do for nondendrimeric [Pt(1,2-diphenylbenzoimidazole)2] (0.02, 0.10%), although its efficiency is still lower than that of the heteroleptic counterpart due to the severely distorted square-planar geometry of the emitting core. These results reveal that large steric hindrance from ancillary ligand (dpm) or the homoleptic conformation can effectively inhibit intermolecular interaction for these dendrimeric Pt(II) complexes. PMID:24393007

  12. Landau-Zener tunneling in the presence of weak intermolecular interactions in a crystal of Mn4 single-molecule magnets

    OpenAIRE

    Wernsdorfer, W.; Bhaduri, S.; Vinslava, A.; Christou, G

    2005-01-01

    A Mn4 single-molecule magnet (SMM), with a well isolated spin ground state of S = 9/2, is used as a model system to study Landau-Zener (LZ) tunneling in the presence of weak intermolecular dipolar and exchange interactions. The anisotropy constants D and B are measured with minor hysteresis loops. A transverse field is used to tune the tunnel splitting over a large range. Using the LZ and inverse LZ method, it is shown that these interactions play an important role in the tunnel rates. Three ...

  13. Determination of stepsize parameters for intermolecular vibrational energy transfer. Final report, May 1, 1987--December 31, 1991

    Energy Technology Data Exchange (ETDEWEB)

    Tardy, D.C.

    1992-03-01

    Intermolecular energy transfer of highly excited polyatomic molecules plays an important role in many complex chemical systems: combustion, high temperature and atmospheric chemistry. By monitoring the relaxation of internal energy we have observed trends in the collisional efficiency ({beta}) for energy transfer as a function of the substrate`s excitation energy and the complexities of substrate and deactivator. For a given substrate {beta} increases as the deactivator`s mass increase to {approximately}30 amu and then exhibits a nearly constant value; this is due to a mass mismatch between the atoms of the colliders. In a homologous series of substrate molecules (C{sub 3}{minus}C{sub 8}) {beta} decreases as the number of atoms in the substrate increases; replacing F with H increases {beta}. All substrates, except for CF{sub 2}Cl{sub 2} and CF{sub 2}HCl below 10,000 cm{sup {minus}1}, exhibited that {beta} is independent of energy, i.e. <{Delta}E>{sub all} is linear with energy. The results are interpreted with a simple model which considers that {beta} is a function of the ocillators energy and its vibrational frequency. Limitations of current approximations used in high temperature unimolecular reactions were evaluated and better approximations were developed. The importance of energy transfer in product yields was observed for the photoactivation of perfluorocyclopropene and the photoproduction of difluoroethyne. 3 refs., 18 figs., 4 tabs.

  14. Intramolecular photo-switching and intermolecular energy transfer as primary photoevents in photoreceptive processes: The case of Euglena gracilis

    International Nuclear Information System (INIS)

    In this paper we report the results of measurements performed by FLIM on the photoreceptor of Euglenagracilis. This organelle consists of optically bistable proteins, characterized by two thermally stable isomeric forms: A498, non fluorescent and B462, fluorescent. Our data indicate that the primary photoevent of Euglena photoreception upon photon absorption consists of two contemporaneous different phenomena: an intramolecular photo-switch (i.e., A498 becomes B462), and a intermolecular and unidirectional Forster-type energy transfer. During the FRET process, the fluorescent B462 form acts as donor for the non-fluorescent A498 form of the protein nearby, which acts as acceptor. We hypothesize that in nature these phenomena follow each other with a domino progression along the orderly organized and closely packed proteins in the photoreceptor layer(s), modulating the isomeric composition of the photoreceptive protein pool. This mechanism guarantees that few photons are sufficient to produce a signal detectable by the cell.

  15. Crystal habits of cubic insulin from porcine pancreas and evaluation of intermolecular interactions by macrobond and EET analyses

    Science.gov (United States)

    Ootaki, Masanori; Endo, Shigeru; Sugawara, Yoko; Takahashi, Takuya

    2009-08-01

    Experimental and theoretical investigations of the crystal growth of cubic insulin from porcine pancreas were carried out. Three different crystal habits, cube, cube and dodecahedron, and rhombic dodecahedron forms, were obtained. Judging from the results of macroseeding, the most stable of these forms would be the rhombic dodecahedron surrounded by {1 1 0} faces. Molecular interactions in the crystal were evaluated by the macrobond analysis and electrostatic energy of transfer (EET) analysis. The calculated surface energy of {1 1 0} was lower than {1 0 0} by around 40%, which was consistent with the experimental results. Atomic EET supported the macrobond analysis, where the number of hydrogen bonds was primarily evaluated. At the same time, it was suggested that the parameters of the interaction energies of electrically neutral pairs would be smaller than those of charged pairs. The contribution from the bound water molecules to the crystal stabilization was discussed.

  16. Intermolecular interactions of inorganic and organic molecules embedded in zeolite-type materials probed by near-infrared Fourier transform Raman spectroscopy

    Science.gov (United States)

    Wirnsberger, Gernot; Fritzer, Harald P.; Koller, Hubert; Behrens, Peter; Popitsch, Alois

    1999-05-01

    Near-infrared Fourier transform Raman spectroscopy represents an excellently suited tool to investigate spectroscopically inorganic and organic molecules occluded in zeolite-type materials as well as interactions between them. Two examples are presented: First, insertion compounds of iodine in various microporous SiO 2 modifications (deca-dodecasil 3R, all-silica theta-1 and silicalite-1) are discussed. Intermolecular interaction between the inserted molecules is prevented by occlusion of iodine in the cages of deca-dodecasil 3R, but is allowed in the insertion compounds of hosts with higher pore dimensionalities. The intermolecular coupling is confirmed by an appreciable reduction of the Raman shifts, as observed similarly for liquid and amorphous iodine. The second example deals with pyridine and n-alkylamines ( n-propyl-, n-butyl- or n-pentylamine) occluded during synthesis in all-silica ferrierite. Raman spectra reveal for all compounds, regardless of the n-alkylamine used, an interaction between the n-alkylamine and neighboring pyridine molecules, with both amines being located in the ten-membered ring channels. For this reason, it is proposed that bimolecular complexes, consisting of an n-alkylamine weakly bound to a pyridine molecule act as structure-directing agents during synthesis.

  17. The role of weak intermolecular C-H…F interactions in supramolecular assembly: Structural investigations on 3,5- dibenzylidene-piperidin-4-one and database analysis

    Indian Academy of Sciences (India)

    R S Rathore; N S Karthikeyan; Y Alekhya; K Sathiyanarayanan; P G Aravindan

    2011-07-01

    The fluorinated and non-fluorinated dibenzylidene-4-piperidones were synthesized and their structures examined using X-ray crystallography. Interestingly, the para-fluorosubstituted dibenzylidene compound, in contrast to other analogs, is characterized by C-H…F bonded one-dimensional packing motif. To evaluate the ability of hydrogen bond donors and acceptors for forming interactions, in general and competitive situation, we have defined statistical descriptors. Analysis of Cambridge Structural Database using these newly defined parameters reveals high propensity of C-H…F interactions in organic crystals. The present structural study suggests much larger role of fluorine driven intermolecular interactions that are even though weak, but possess significant ability to direct and alter the packing.

  18. Spectra of tetraalkylammonium halogenides in the range of 30-400 sm-1 and the influence of intermolecular interaction on them

    International Nuclear Information System (INIS)

    The frequency of interionic vibrations in tetraalkylammonium salts versus the length of radicals is elucidated. The frequencies of (C8H17)4NI and (C10H21)4NI compounds coincide manifesting the saturation of this effect. The vibration frequencies decrease with increasing size and mass of the anion. In the ammonium salt solutions in CCL4 the vibration intensities of ?4 in carbon tetrachloride at 310 cm-1 increase considerably. This is explained by intermolecular interaction. Addition of phenol to the CCl4 solutions causes appearance of new bands above the interionic vibrations. Intensity redistribution with increase in the phenol concentration serves as an evidence of association processes with phenol and tetraalkylammonium slat participation. Most natural is an assignment of the bands appearing to the intermolecular vibrations with phenol and proton acceptor participation. The absence of spectral behaviour of the interaction in trialkylammonium salts may be due to a decrease of their proton donor ability in comparixon with tetraalkylammonium halohalides

  19. Polyelectrolyte and non-polyelectrolyte polyacrylamide copolymer solutions: the role of salt on the intra- and intermolecular interactions

    Scientific Electronic Library Online (English)

    Ana M. S., Maia; Marcos A., Villetti; Redouane, Borsali; Rosangela C., Balaban.

    2013-11-01

    Full Text Available Poli(acrilamida-co-dihexilacrilamida) (PAHM-0) e poli(acrilamida-co-acrilato de sódio-co-dihexilacrilamida) (PAHM-21) foram estudadas por espalhamento de raios-X a baixos ângulos (SAXS), espalhamento de luz (LS) e reologia. Os resultados de SAXS ressaltaram o caráter polieletrolítico da PAHM-21, com [...] uma conformação altamente estendida em solução aquosa devido às repulsões entre as cargas, enquanto a PAHM-0 tem uma conformação em novelo aleatório. As medidas de LS indicaram que a PAHM-0 forma aglomerados intermoleculares em solução, na presença e na ausência de sal, mesmo com um conteúdo hidrofóbico menor que o descrito na literatura para poliacrilamidas associativas. Contudo, os resultados reológicos mostraram que, apesar de haver associação hidrofóbica, não há um aumento da viscosidade. Os resultados de LS da PAHM-21 sugerem que esse polímero forma, predominantemente, associações intramoleculares na presença de sais. Além disso, as medidas viscosimétricas mostram que a sua viscosidade diminui com a blindagem das cargas pela adição de sais. Abstract in english Poly(acrylamide-co-dihexylacrylamide) (PAHM-0) and poly(acrylamide-co-sodium acrylate-co-dihexylacrylamide) (PAHM-21) were studied through small-angle X-ray scattering (SAXS), light scattering (LS) and rheology. SAXS results highlighted the polyelectrolyte character of PAHM-21, with highly extended [...] conformation in aqueous solution owing to charge repulsion, while the PAHM-0 has a coil conformation. LS measurements indicated that PAHM-0 makes intermolecular clusters in solution, in presence and absence of salt, even with a lower hydrophobic content than that described in the literature to the associative polyacrylamides. However, the rheological results showed that there is not an enhancement of the viscosity although hydrophobic association takes place. LS results for PAHM-21 suggest that this polymer makes intramolecular associations mainly in the presence of salts. Furthermore, the viscosity measurements show that its viscosity decreases due to screening of the charges by the addition of salts.

  20. INTER-MOLECULAR INTERACTIONS OF TETRAHYDROPYRAN + 1-BUTANOL BINARY SYSTEM AT T= (298.15, 303.15, 308.15, 313.15 & 318.15 K

    Directory of Open Access Journals (Sweden)

    Anil Kumar K

    2014-06-01

    Full Text Available The evaluation of the different thermo dynamical parameters such as isentropic compressibility, molar volume, free length, acoustic impedance, internal pressure with their excess E E values, excess velocity (u , deviations of isentropic compressibility (? K , excess molar volume (V , s m E E E excess free length (L , excess acoustic impedance (Z and excess internal pressure (ð over the entire f i range of composition have been carried out at T = (298.15, 303.15, 308.15, 313.15 & 318.15 K from the measurements of ultrasonic velocity (u and density (ñ of pure & binary liquid mixtures of tetrahydropyran (THP with 1-butanol. The results thus obtained are discussed for molecular interaction. The nature of these values as seen from the plots of these ultrasonic parameters with the composition range indicates presence of the intermolecular interaction between the components of molecules of the mixture.

  1. Intramolecular photo-switching and intermolecular energy transfer as primary photoevents in photoreceptive processes: The case of Euglena gracilis

    Energy Technology Data Exchange (ETDEWEB)

    Mercatelli, Raffaella; Quercioli, Franco [Istituto Sistemi Complessi, CNR, Via Madonna del Piano 10, 50019 Sesto Fiorentino (Italy); Barsanti, Laura; Evangelista, Valter [Istituto di Biofisica, CNR, Via Moruzzi 1, 56124 Pisa (Italy); Coltelli, Primo [ISTI, CNR, Via Moruzzi 1, 56124 Pisa (Italy); Passarelli, Vincenzo; Frassanito, Anna Maria [Istituto di Biofisica, CNR, Via Moruzzi 1, 56124 Pisa (Italy); Gualtieri, Paolo, E-mail: paolo.gualtieri@pi.ibf.cnr.it [Istituto di Biofisica, CNR, Via Moruzzi 1, 56124 Pisa (Italy)

    2009-07-24

    In this paper we report the results of measurements performed by FLIM on the photoreceptor of Euglenagracilis. This organelle consists of optically bistable proteins, characterized by two thermally stable isomeric forms: A{sub 498,} non fluorescent and B{sub 462}, fluorescent. Our data indicate that the primary photoevent of Euglena photoreception upon photon absorption consists of two contemporaneous different phenomena: an intramolecular photo-switch (i.e., A{sub 498} becomes B{sub 462}), and a intermolecular and unidirectional Forster-type energy transfer. During the FRET process, the fluorescent B{sub 462} form acts as donor for the non-fluorescent A{sub 498} form of the protein nearby, which acts as acceptor. We hypothesize that in nature these phenomena follow each other with a domino progression along the orderly organized and closely packed proteins in the photoreceptor layer(s), modulating the isomeric composition of the photoreceptive protein pool. This mechanism guarantees that few photons are sufficient to produce a signal detectable by the cell.

  2. Specific intermolecular interactions of conserved water molecules with amino acids in the Galectin-1 carbohydrate recognition domain

    Science.gov (United States)

    Di Lella, Santiago; Petruk, Ariel A.; Armiño, Diego J. Alonso de; Álvarez, Rosa M. S.

    2010-08-01

    Water molecules, rigidly associated to protein surfaces, play a key role in stabilizing biomolecules and participating in their biological functions. Recent studies on the solvation properties of the carbohydrate recognition domain of Galectin-1 by means of molecular dynamic simulations have revealed the existence of several water sites which were well correlated to both the bound water molecules observed in the crystal structure of the protein in the free state and to some of the hydroxyl groups of the carbohydrate ligand observed in the crystal structure of the complexed protein. In this work, we present a study using quantum mechanical methods (B3LYP/6-311++G(3df,3dp)//B3LYP/6-31+G(d)) to determine the energy involved in the binding of these water molecules to specific amino acids in the carbohydrate recognition domain of the protein. By modeling the hydroxyl groups of the carbohydrate by methanol, the energies associated to the local interactions between the ligand and the protein have been evaluated by replacing specific water molecules with methanol. The values of the binding energies have been compared to those previously obtained by the molecular dynamic method.

  3. Intra- and intermolecular energy transfer of large molecules in solution after picosecond excitation

    International Nuclear Information System (INIS)

    As an example of intramolecular vibrational redistribution experimental data of anthracene are presented. The absorption tail of anthracene at room temperature is compared with the transient absorption taken 7 ps after excitation with infrared photons of 3050 cm-1. The small shoulder seen at the room temperature curve results from three hot bands around 1400 cm-1. After IR-excitation of the CH stretching modes, the energy is rapidly redistributed and the absorption of the hot bands increases drastically. The experimental data suggest a rise of internal temperature of 170 K and the same increase of temperature is calculated when the energy of 3050 cm-1 is distributed over all the vibrational modes of anthracene. Similar findings were made for a number of other molecules

  4. Intermolecular energy transfer from UO22+ to Eu3+ in solutions

    International Nuclear Information System (INIS)

    The quenching constants for the UO22+ ion fluorescence by the Eu3+ ion in H2O, D2O, potassium formate and acetic acid media were determined by measuring the decrease in intensity of the 5050 A fluorescence peak and the lifetime of the UO22+ ion fluorescence. The energy transferred to the Eu3+ ion was found to be a small fraction of the energy lost by the UO22+ ion by the non-radiative processes. The variations of the quenching constants of the UO22+ ion and the fluorescence lifetimes were determined for different concentrations of potassium formate and acetic acid. These results indicate that the UO22+ ion forms inner sphere complexes with the two ligands mentioned

  5. Interacting Agegraphic Dark Energy

    OpenAIRE

    Wei, Hao; Cai, Rong-gen

    2007-01-01

    A new dark energy model, named "agegraphic dark energy", has been proposed recently, based on the so-called K\\'{a}rolyh\\'{a}zy uncertainty relation, which arises from quantum mechanics together with general relativity. In this note, we extend the original agegraphic dark energy model by including the interaction between agegraphic dark energy and pressureless (dark) matter. In the interacting agegraphic dark energy model, there are many interesting features different from the original agegrap...

  6. Intermolecular vibrational energy redistribution in DCO (X^2A'): Classical-Quantum correspondence, dynamical assignments of highly excited states, and phase space transport

    OpenAIRE

    Semparithi, A.; Keshavamurthy, S.

    2003-01-01

    Intermolecular dynamics of highly excited DCO (X^2A') is studied from a classical-quantum perspective using the effective spectroscopic Hamiltonian proposed recently by Trollch and Temps (Z. Phy. Chem. 215, 207 (2001)). This work focuses on the polyads P = 3 and P = 4 corresponding to excitation energies E_v ~ 5100 cm^-1 and 7000 cm^-1 respectively. The majority of states belonging to these polyads are dynamically assigned, despite extensive stochasticity in the classical ph...

  7. Vapour pressures of 1-methyl derivatives of benzimidazole, pyrazole and indole. The energy of the intermolecular hydrogen bond N-H?N

    International Nuclear Information System (INIS)

    Highlights: • Vapour pressures of 1-methyl derivatives of benzimidazole, pyrazole and indole. • Enthalpies, entropies and Gibbs free energies of sublimation/vaporisation were derived. • Temperatures and enthalpies of fusion were determined. • Energy of the intermolecular hydrogen bond N-H?N was estimated. - Abstract: The vapour pressures of the liquid phase of 1-methylpyrazole, 1-methylbenzimidazole and 1-methylindole were measured over the temperature ranges (253.9 to 293.3) K, (303.2 to 372.5) K, and (268.6 to 341.9) K, respectively, using a static method. The vapour pressures of the crystalline phase of the two latter compounds were also measured at temperatures between (301.2 to 328.9) K and (267.6 to 275.5) K, respectively. The results obtained enabled the determination of the standard molar enthalpies and entropies of sublimation and of vaporisation at the mean temperatures of the measurements and at T = 298.15 K. The temperatures and molar enthalpies of fusion were determined using differential scanning calorimetry. The enthalpies of the intermolecular hydrogen bonds N-H?N in the crystalline phase of benzimidazole and pyrazole were determined and compared with the result previously determined for the energy of the intermolecular hydrogen bond in crystalline imidazole

  8. Structural Analysis of Intermolecular Interactions in the Kinesin Adaptor Complex Fasciculation and Elongation Protein Zeta 1/ Short Coiled-Coil Protein (FEZ1/SCOCO)

    Science.gov (United States)

    da Silva, Júlio César; Sforça, Maurício Luís; Honorato, Rodrigo Vargas; Granato, Daniela Campos; dos Santos Migueleti, Deivid Lucas; Neves, Jorge L.; de Oliveira, Paulo Sergio Lopes; Paes-Leme, Adriana Franco; Zeri, Ana Carolina de Mattos; de Torriani, Iris Concepcion Linares; Kobarg, Jörg

    2013-01-01

    Cytoskeleton and protein trafficking processes, including vesicle transport to synapses, are key processes in neuronal differentiation and axon outgrowth. The human protein FEZ1 (fasciculation and elongation protein zeta 1 / UNC-76, in C. elegans), SCOCO (short coiled-coil protein / UNC-69) and kinesins (e.g. kinesin heavy chain / UNC116) are involved in these processes. Exploiting the feature of FEZ1 protein as a bivalent adapter of transport mediated by kinesins and FEZ1 protein interaction with SCOCO (proteins involved in the same path of axonal growth), we investigated the structural aspects of intermolecular interactions involved in this complex formation by NMR (Nuclear Magnetic Resonance), cross-linking coupled with mass spectrometry (MS), SAXS (Small Angle X-ray Scattering) and molecular modelling. The topology of homodimerization was accessed through NMR (Nuclear Magnetic Resonance) studies of the region involved in this process, corresponding to FEZ1 (92-194). Through studies involving the protein in its monomeric configuration (reduced) and dimeric state, we propose that homodimerization occurs with FEZ1 chains oriented in an anti-parallel topology. We demonstrate that the interaction interface of FEZ1 and SCOCO defined by MS and computational modelling is in accordance with that previously demonstrated for UNC-76 and UNC-69. SAXS and literature data support a heterotetrameric complex model. These data provide details about the interaction interfaces probably involved in the transport machinery assembly and open perspectives to understand and interfere in this assembly and its involvement in neuronal differentiation and axon outgrowth. PMID:24116125

  9. Landau-Zener tunneling in the presence of weak intermolecular interactions in a crystal of Mn4 single-molecule magnets

    Science.gov (United States)

    Wernsdorfer, W.; Bhaduri, S.; Vinslava, A.; Christou, G.

    2005-12-01

    A Mn4 single-molecule magnet (SMM), with a well-isolated spin ground state of S=9/2 , is used as a model system to study Landau-Zener (LZ) tunneling in the presence of weak intermolecular dipolar and exchange interactions. The anisotropy constants D and B are measured with minor hysteresis loops. A transverse field is used to tune the tunnel splitting over a large range. Using the LZ and inverse LZ method, it is shown that these interactions play an important role in the tunnel rates. Three regions are identified: (i) at small transverse fields, tunneling is dominated by single tunnel transitions, (ii) at intermediate transverse fields, the measured tunnel rates are governed by reshuffling of internal fields, and (iii) at larger transverse fields, the magnetization reversal starts to be influenced by the direct relaxation process, and many-body tunnel events may occur. The hole digging method is used to study the next-nearest-neighbor interactions. At small external fields, it is shown that magnetic ordering occurs which does not quench tunneling. An applied transverse field can increase the ordering rate. Spin-spin cross-relaxations, mediated by dipolar and weak exchange interactions, are proposed to explain additional quantum steps.

  10. Mapping intermolecular bonding in C??.

    Science.gov (United States)

    Sundqvist, Bertil

    2014-01-01

    The formation of intermolecular bonds in C?? has been investigated in detail at pressures below 2.2?GPa and up to 750?K. Fullerene samples were heated in a temperature gradient to obtain data on the formation of dimers and low-dimensional polymers along isobars. Intermolecular bonding was analyzed ex situ by Raman scattering, using both intramolecular modes and intermolecular stretching modes. Semi-quantitative reaction maps are given for the formation of dimers and chains. The activation energy for dimer formation decreases by 0.2?meV pm(-1) when intermolecular distances decrease and dimer formation is noticeably affected by the rotational state of molecules. Above 400-450?K larger oligomers are formed; below 1.4?GPa most of these are disordered, with small domains of linear chains, but above this the appearance of stretching modes indicates the existence of ordered one-dimensional polymers. At the highest pressures and temperatures two-dimensional polymers are also observed. PMID:25145952

  11. Intra and inter-molecular interactions dictate the aggregation state of irinotecan co-encapsulated with floxuridine inside liposomes

    DEFF Research Database (Denmark)

    Dicko, A.; Frazier, A.A.; Liboiron, B.D.; Hinderliter, A.; Ellena, J.F.; Xie, X.; Cho, C.; Weber, T.; Tardi, P.G.; Cabral-Lilly, D.; Cafiso, D.S.; Mayer, L.D.

    2008-01-01

    PURPOSE: The inter/intramolecular interactions between drugs (floxuridine, irinotecan) and excipients (copper gluconate, triethanolamine) in the dual-drug liposomal formulation CPX-1 were elucidated in order to identify the physicochemical properties that allow coordinated release of irinotecan and...... required to achieve the highest solubility of irinotecan, direct drug-excipient binding interactions were absent. CONCLUSIONS: Long-range interactions between irinotecan, floxuridine and excipients modulate the aggregation state of irinotecan, allowing for simultaneous release of both drugs from the...

  12. Analysis of Cl…Cl and C-H…Cl intermolecular interactions involving chlorine in substituted 2-chloroquinoline derivatives

    Indian Academy of Sciences (India)

    Venkatesha R Hathwar; S Mohana Roopan; R Subashini; F Nawaz Khan; T N Guru Row

    2010-09-01

    Six crystal structures of substituted 2-chloroquinoline derivatives have been analysed to evaluate the role of Cl atom as a self recognizing unit resulting in the formation of Cl…Cl and C-H…Cl interactions to generate supramolecular assembly in the solid state. The features of Type I and Type II geometries associated with Cl…Cl interactions have been analysed to show directional preferences leading to differences in the packing motifs in these crystal structures. C-H…Cl interactions are generated exclusively in structures depicting Type II Cl…Cl interaction have been observed in these structures.

  13. Landau-Zener tunneling in the presence of weak intermolecular interactions in a crystal of Mn4 single-molecule magnets

    CERN Document Server

    Wernsdorfer, W; Vinslava, A; Christou, G

    2005-01-01

    A Mn4 single-molecule magnet (SMM), with a well isolated spin ground state of S = 9/2, is used as a model system to study Landau-Zener (LZ) tunneling in the presence of weak intermolecular dipolar and exchange interactions. The anisotropy constants D and B are measured with minor hysteresis loops. A transverse field is used to tune the tunnel splitting over a large range. Using the LZ and inverse LZ method, it is shown that these interactions play an important role in the tunnel rates. Three regions are identified: (i) at small transverse fields, tunneling is dominated by single tunnel transitions; (ii) at intermediate transverse fields, the measured tunnel rates are governed by reshuffling of internal fields, (iii) at larger transverse fields, the magnetization reversal starts to be influenced by the direct relaxation process, and many-body tunnel events may occur. The hole digging method is used to study the next-nearest neighbor interactions. At small external fields, it is shown that magnetic ordering occ...

  14. Intermolecular, ion-molecular and interionic interactions in solutions of lithium and tetrabutylammonium salts in mixtures of methanol with propylene carbonate

    International Nuclear Information System (INIS)

    Interparticle interactions are investigated in solutions of LiI, LiBr, LiCl, LiNCS, (C4H9)4NI, (C4H9)4NBr, (C4H9)4NCl in mixtures of methanol with propylene carbonate in absence of self-association of molecules of methanol and in different salt concentrations by the methods of IR spectroscopy. Intermolecular and ion-molecular interactions are studied on IR absorption lines of valent vibrations of OH-groups of methanol (3300-3500 cm-1), interionic interaction - on lines of valent CN (2000-2100 cm-1) and deformation O-Cl-O (625 cm-1) vibrations of NVS- and ClO4- correspondingly. Concentrations of lithium complexes forming in solutions are calculated on intensities of valent absorption lines of OH-groups of methanol. In the case of salt concentration increase the content of complexes decreases. Ousting of solvent molecule by anions in complex happens so faster as electron-donor ability of it is higher

  15. Relationship between molecular weight of poly(ethylene)glycol and intermolecular interaction of Taka-amylase A monomers

    Science.gov (United States)

    Onuma, Kazuo; Furubayashi, Naoki; Shibata, Fujiko; Kobayashi, Yoshiko; Kaito, Sachiko; Ohnishi, Yuki; Inaka, Koji

    2010-04-01

    Dynamic and static light scattering investigations of Taka-amylase A (TAA) protein monomers were done using solutions containing poly(ethylene)glycol (PEG) with molecular weights of 1500, 4000, 8000, and 20 000. The anomalies observed in a previous study using a weight of 8000, in which the hydrodynamic TAA monomer radius at a zero protein concentration and the molecular weight of the monomers decreased when the PEG concentration was increased, were observed for all four weights. These anomalies became more pronounced as the PEG molecular weight was increased. The overall interaction parameter did not move further in the direction of the attractive force despite an increase in the PEG concentration from 6% to 12.5% for the PEG 8000 and 20 000 solutions. This was due to the change in the relative contributions of the static structure factor (direct interaction) and the hydrodynamic interaction factor (indirect interaction) against the overall interaction parameter. For the PEG 1500 and 4000 solutions, the change in the overall interaction parameter with an increase in the PEG concentration was controlled by changing the static structure factor. For the PEG 8000 and 20 000 solutions, a change in the hydrodynamic interaction factor with an increase in the PEG concentration offset the change in the static structure factor, unexpectedly resulting in the overall interaction parameter being independent of the PEG concentration. This suggests that the scale and density of a PEG network structure, which are thought to be the origin of the observed anomalies, change nonlinearly with the PEG molecular weight.

  16. Interaction of Pyrrolobenzodiazepine (PBD) Ligands with Parallel Intermolecular G-Quadruplex Complex Using Spectroscopy and ESI-MS

    OpenAIRE

    Raju, Gajjela; Srinivas, Ragampeta; Santhosh Reddy, Vangala; Idris, Mohammed M.; Kamal, Ahmed; Nagesh, Narayana

    2012-01-01

    Studies on ligand interaction with quadruplex DNA, and their role in stabilizing the complex at concentration prevailing under physiological condition, has attained high interest. Electrospray ionization mass spectrometry (ESI-MS) and spectroscopic studies in solution were used to evaluate the interaction of PBD and TMPyP4 ligands, stoichiometry and selectivity to G-quadruplex DNA. Two synthetic ligands from PBD family, namely pyrene-linked pyrrolo[2,1-c][1,4]benzodiazepine hybrid (PBD1), mix...

  17. Theoretical studies for the N2-N2O van der Waals complex: The potential energy surface, intermolecular vibrations, and rotational transition frequencies

    Science.gov (United States)

    Zheng, Rui; Zheng, Limin; Lu, Yunpeng; Yang, Minghui

    2015-10-01

    Theoretical studies of the potential energy surface (PES) and bound states are performed for the N2-N2O van der Waals (vdW) complex. A four-dimensional intermolecular PES is constructed at the level of single and double excitation coupled-cluster method with a non-iterative perturbation treatment of triple excitations [CCSD(T)] with aug-cc-pVTZ basis set supplemented with bond functions. Two equivalent T-shaped global minima are located, in which the O atom of N2O monomer is near the N2 monomer. The intermolecular fundamental vibrational states are assigned by inspecting the orientation of the nodal surface of the wavefunctions. The calculated frequency for intermolecular disrotation mode is 23.086 cm-1, which is in good agreement with the available experimental data of 22.334 cm-1. A negligible tunneling splitting with the value of 4.2 MHz is determined for the ground vibrational state and the tunneling splitting increases as the increment of the vibrational frequencies. Rotational levels and transition frequencies are calculated for both isotopomers 14N2-N2O and 15N2-N2O. The accuracy of the PES is validated by the good agreement between theoretical and experimental results for the transition frequencies and spectroscopic parameters.

  18. Electronic transitions and intermolecular forces

    International Nuclear Information System (INIS)

    This thesis describes two different subjects - electronic transitions and intermolecular forces - that are related mainly by the following observation: The wavenumber at which an electronic transition in an atom or molecule occurs, depends on the environment of that atom or molecule. This implies, for instance, that when a molecule becomes solvated its absorption spectrum may be shifted either to the blue or to the red side of the original gasphase spectrum. In part I attention is paid to the experimental aspects of VUV spectroscopy, both in the gasphase and in the condensed phase. In part II a series of papers are presented, dealing with the calculation of intermolecular forces (and some related topics) both for the ground state and for the excited state interactions, using different non-empirical methods. The calculations provide, among other results, a semiquantitative interpretation of the spectral blue shifts encountered in our experiments. (Auth.)

  19. A quantum-chemical validation about the formation of hydrogen bonds and secondary interactions in intermolecular heterocyclic systems

    Directory of Open Access Journals (Sweden)

    Boaz Galdino Oliveira

    2009-08-01

    Full Text Available We have performed a detailed theoretical study in order to understand the charge density topology of the C2H4O···C2H2 and C2H4S···C2H2 heterocyclic hydrogen-bonded complexes. Through the calculations derived from Quantum Theory of Atoms in Molecules (QTAIM, it was observed the formation of hydrogen bonds and secondary interactions. Such analysis was performed through the determination of optimized geometries at B3LYP/6-31G(d,p level of theory, by which is that QTAIM topological operators were computed, such as the electronic density ?(r, Laplacian Ñ2?(r, and ellipticity ?. The examination of the hydrogen bonds has been performed through the measurement of ?(r, Ñ2?(r and ? between (O···H—C and (S···H—C, whereas the secondary interaction between axial hydrogen atoms H? and carbon of acetylene. In this insight, it was verified the existence of secondary interaction only in C2H4S···C2H2 complex because its structure is propitious to form multiple interactions.

  20. Weak intermolecular interactions of chromium, molybdenum and vanadium bis-arene complexes with CH- and OH-acids

    International Nuclear Information System (INIS)

    Using the method of IR spectroscopy coordination interactions of molybdenum and vanadium organometallic compounds (OMC) (bis-ethyl benzene molybdenum, bisethyl benzene vanadium) with hydroperoxides of ternary butyl and cumyl, as well as with ternary butanol and phenol are investigated. Possible types of OMC coordination with CH- and OH-acids are considered. The role of coordination complexes in the oxidation mechanism of bis-arene derivatives of transition metals by hydroperoxides is discussed

  1. STUDY OF INTERMOLECULAR FORCES AND INTERACTIONS IN BINARY LIQUID MIXTURE CHLOROFORM, ACETONE, M-XYLENE, AND CYCLOHEXANE IN DMSO

    Directory of Open Access Journals (Sweden)

    Dheeraj Kumar

    2014-05-01

    Full Text Available Thermodynamic studies like density ( ? , ultrasonic speed ( u and excess molar volume ( Vm E of binary liquid mixture of Chloroform ,Acetone, m- Xylene ,Cyclohexane+ DMSO have been carried out over the different range of composition at 308.15 K. Thermodynamic parameters like isentropic compressibility Ks , interaction parameter, ?12 , Flory parameters, coefficients, Ai and standard deviations, ? (Y E have been computed from experimental findings.

  2. Intra and inter-molecular interactions dictate the aggregation state of irinotecan co-encapsulated with floxuridine inside liposomes

    DEFF Research Database (Denmark)

    Dicko, A.; Frazier, A.A.

    2008-01-01

    PURPOSE: The inter/intramolecular interactions between drugs (floxuridine, irinotecan) and excipients (copper gluconate, triethanolamine) in the dual-drug liposomal formulation CPX-1 were elucidated in order to identify the physicochemical properties that allow coordinated release of irinotecan and floxuridine and maintenance of the two agents at a fixed, synergistic 1:1 molar ratio. METHODS: Release of irinotecan and floxuridine from the liposomes was assessed using an in vitro-release assay. Fluorescence, Nuclear Magnetic Resonance spectroscopy (NMR) and UV-Vis were used to characterize the aggregation state of the drugs within the liposomes. RESULTS: Coordinated release of the drugs from liposomes was disrupted by removing copper gluconate. Approximately 45% of the total irinotecan was detectable in the copper-containing CPX-1 formulation by NMR, which decreased to 19% without copper present in the liposomal interior. Formation of higher order, NMR-silent aggregates was associated with slower and uncoordinated irinotecan release relative to floxuridine and loss of the synergistic drug/drug ratio. Solution spectroscopy and calorimetry revealed that while all formulation components were required to achieve the highest solubility of irinotecan, direct drug-excipient binding interactions were absent. CONCLUSIONS: Long-range interactions between irinotecan, floxuridine and excipients modulate the aggregation state of irinotecan, allowing for simultaneous release of both drugs from the liposomes Udgivelsesdato: 2008/7

  3. Interactive Energy Planning

    DEFF Research Database (Denmark)

    Blarke, Morten Boje

    2006-01-01

    anchoring along the shores of the land of communications and collaboration. Whether or not a particular typology is applicable, theory and praxis are establishing standpoints, which strengthens our understanding of the planning complex, and which should inspire improved energy planning methodologies and...... tools. This paper presents an “Interactive Energy Planning” framework, which is intended to support interactivity in planning, building on important theoretical and experimental advances in planning. In particular, the paper explores the potential significance of allowing a critical perspective on...... context analysis and problem-orientation to define the course of the planning process, and deploying value-rational planning tools primarily as a platform for interactivity. The focus on interactivity in energy planning will allow contemporary government planners, consultants, researchers, and...

  4. Anisotropic intermolecular interactions and rotational ordering in hydrogen containing solids. Final report, January 1, 1972--June 30, 1978

    Energy Technology Data Exchange (ETDEWEB)

    White, D.

    1978-01-01

    Thermodynamic properties, order-disorder phenomena, optical, electric and magnetic properties of hydrogen-containing molecular solids have been investigated. A summary of the findings of this 6 year research program is presented here. The approach in these studies was (a) thermodynamic and transport studies extending to very low temperatures, (b) pulsed NMR studies for determination of structural parameters important to spin-lattice relaxation, and (c) pulsed laser studies for the investigation of excitations and energy transfer mechanisms in solids. (GHT)

  5. Interacting Dark Energy

    OpenAIRE

    Zhang, Xinmin

    2004-01-01

    In this paper I discuss some of the phenomenologies of models of the dark energy interacting with the ordinary matter. After a very brief review about the current constraint on the equation of the state of the dark energy from the SN and a new scenario of dark energy {\\it the Quintom}, I present models of Quintessential Baryo(Lepto)genesis, Quintessino dark matter and mass varying neutrinos in details.

  6. Intra and inter-molecular interactions dictate the aggregation state of irinotecan co-encapsulated with floxuridine inside liposomes

    DEFF Research Database (Denmark)

    Dicko, A.; Frazier, A.A.; Liboiron, B.D.; Hinderliter, A.; Ellena, J.F.; Xie, X.; Cho, C.; Weber, T.; Tardi, P.G.; Cabral-Lilly, D.; Cafiso, D.S.; Mayer, L.D.

    2008-01-01

    PURPOSE: The inter/intramolecular interactions between drugs (floxuridine, irinotecan) and excipients (copper gluconate, triethanolamine) in the dual-drug liposomal formulation CPX-1 were elucidated in order to identify the physicochemical properties that allow coordinated release of irinotecan and...... floxuridine and maintenance of the two agents at a fixed, synergistic 1:1 molar ratio. METHODS: Release of irinotecan and floxuridine from the liposomes was assessed using an in vitro-release assay. Fluorescence, Nuclear Magnetic Resonance spectroscopy (NMR) and UV-Vis were used to characterize the...... aggregation state of the drugs within the liposomes. RESULTS: Coordinated release of the drugs from liposomes was disrupted by removing copper gluconate. Approximately 45% of the total irinotecan was detectable in the copper-containing CPX-1 formulation by NMR, which decreased to 19% without copper present in...

  7. Ab initio Intermolecular Potential Energy Surface and Calculation of Second Virial Coefficients for the Cl2–Cl2 Dimer

    OpenAIRE

    Nguyen Thanh Duoc; Nguyen Thi Ai Nhung; Tran Duong; Pham Van Tat

    2015-01-01

    The results presented in this paper are the ab initio intermolecular potentials and the second virial coefficient, B2 (T) of the dimer Cl2-Cl2. These ab initio potentials were proposed by the quantum chemical calculations at high level of theory CCSD (T) with basis sets of Dunning’s valence correlation-consistent aug-cc-pVmZ (m = 2, 3); these results were extrapolated to complete basis set limit aug-cc-pV23Z. The ab initio energies of complete basis set limit aug-cc-pV23Z resulted from the ex...

  8. A theoretical-experimental proposal, in teaching sequences about intermolecular interactions on teaching chemistry using varations of the test of adulteration in gasline and urucum dyes

    Directory of Open Access Journals (Sweden)

    Ademir de Souza Pereira

    2012-09-01

    Full Text Available This paper reports presents the results of a research developed with students of the high school in the Dourados, Mato Grosso do Sul, with the objective of proposing a theoretical-experimental teaching sequences, potentially significant, approaching the theme Intermolecular Interactions. The teaching sequence was developed with 44 students of the last year of the high school, with the duration of 9 classes of 50 minutes. The methodology presents the characteristics of the qualitative research, being based on David Ausubel's theoretical. We used, as advance organizer, the test determination of the ethanol content in gasoline, adapting, along the experiments, to the use of the natural dyes of the urucum seeds communly used through the region the research was done. The instruments used to collect the information was through the use of questionnaires and observations of the classes. At the end 32 students presented arguments, developing in each stage, as well as in participation, as in classroom discussion, evidencing the evolution conceptual on the process of significant learning.

  9. Intermolecular potential energy surface and thermophysical properties of the CH{sub 4}–N{sub 2} system

    Energy Technology Data Exchange (ETDEWEB)

    Hellmann, Robert, E-mail: robert.hellmann@uni-rostock.de; Bich, Eckard; Vogel, Eckhard [Institut für Chemie, Universität Rostock, 18059 Rostock (Germany); Vesovic, Velisa [Department of Earth Science and Engineering, Imperial College London, London SW7 2AZ (United Kingdom)

    2014-12-14

    A five-dimensional potential energy surface (PES) for the interaction of a rigid methane molecule with a rigid nitrogen molecule was determined from quantum-chemical ab initio calculations. The counterpoise-corrected supermolecular approach at the CCSD(T) level of theory was utilized to compute a total of 743 points on the PES. The interaction energies were calculated using basis sets of up to quadruple-zeta quality with bond functions and were extrapolated to the complete basis set limit. An analytical site-site potential function with nine sites for methane and five sites for nitrogen was fitted to the interaction energies. The PES was validated by calculating the cross second virial coefficient as well as the shear viscosity and binary diffusion coefficient in the dilute-gas limit for CH{sub 4}–N{sub 2} mixtures. An improved PES was obtained by adjusting a single parameter of the analytical potential function in such a way that quantitative agreement with the most accurate experimental values of the cross second virial coefficient was achieved. The transport property values obtained with the adjusted PES are in good agreement with the best experimental data.

  10. Basis Set Dependence of Interaction Energies Computed Using Composite Post-MP2 Methods.

    Czech Academy of Sciences Publication Activity Database

    Platts, J. A.; Hill, J. G.; Riley, K. E.; ?ezá?, Jan; Hobza, Pavel

    2013-01-01

    Ro?. 9, ?. 1 (2013), s. 330-337. ISSN 1549-9618 R&D Projects: GA ?R GBP208/12/G016 Institutional support: RVO:61388963 Keywords : plesset perturbation- theory * intermolecular interaction energies * density fitting approximations Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 5.310, year: 2013

  11. Competing intramolecular vs. intermolecular hydrogen bonds in solution.

    Science.gov (United States)

    Nagy, Peter I

    2014-01-01

    A hydrogen bond for a local-minimum-energy structure can be identified according to the definition of the International Union of Pure and Applied Chemistry (IUPAC recommendation 2011) or by finding a special bond critical point on the density map of the structure in the framework of the atoms-in-molecules theory. Nonetheless, a given structural conformation may be simply favored by electrostatic interactions. The present review surveys the in-solution competition of the conformations with intramolecular vs. intermolecular hydrogen bonds for different types of small organic molecules. In their most stable gas-phase structure, an intramolecular hydrogen bond is possible. In a protic solution, the intramolecular hydrogen bond may disrupt in favor of two solute-solvent intermolecular hydrogen bonds. The balance of the increased internal energy and the stabilizing effect of the solute-solvent interactions regulates the new conformer composition in the liquid phase. The review additionally considers the solvent effects on the stability of simple dimeric systems as revealed from molecular dynamics simulations or on the basis of the calculated potential of mean force curves. Finally, studies of the solvent effects on the type of the intermolecular hydrogen bond (neutral or ionic) in acid-base complexes have been surveyed. PMID:25353178

  12. Competing Intramolecular vs. Intermolecular Hydrogen Bonds in Solution

    Directory of Open Access Journals (Sweden)

    Peter I. Nagy

    2014-10-01

    Full Text Available A hydrogen bond for a local-minimum-energy structure can be identified according to the definition of the International Union of Pure and Applied Chemistry (IUPAC recommendation 2011 or by finding a special bond critical point on the density map of the structure in the framework of the atoms-in-molecules theory. Nonetheless, a given structural conformation may be simply favored by electrostatic interactions. The present review surveys the in-solution competition of the conformations with intramolecular vs. intermolecular hydrogen bonds for different types of small organic molecules. In their most stable gas-phase structure, an intramolecular hydrogen bond is possible. In a protic solution, the intramolecular hydrogen bond may disrupt in favor of two solute-solvent intermolecular hydrogen bonds. The balance of the increased internal energy and the stabilizing effect of the solute-solvent interactions regulates the new conformer composition in the liquid phase. The review additionally considers the solvent effects on the stability of simple dimeric systems as revealed from molecular dynamics simulations or on the basis of the calculated potential of mean force curves. Finally, studies of the solvent effects on the type of the intermolecular hydrogen bond (neutral or ionic in acid-base complexes have been surveyed.

  13. Disorder and intermolecular interactions in a family of tetranuclear Ni(II) complexes probed by high-frequency electron paramagnetic resonance.

    Science.gov (United States)

    Lawrence, Jon; Yang, En-Che; Edwards, Rachel; Olmstead, Marilyn M; Ramsey, Chris; Dalal, Naresh S; Gantzel, Peter K; Hill, Stephen; Hendrickson, David N

    2008-03-17

    High-frequency electron paramagnetic resonance (HFEPR) data are presented for four closely related tetranuclear Ni(II) complexes, [Ni(hmp)(MeOH)Cl]4.H2O (1a), [Ni(hmp)(MeOH)Br]4.H2O (1b), [Ni(hmp)(EtOH)Cl]4.H2O (2), and [Ni(hmp)(dmb)Cl]4 (3) (where hmp(-) is the anion of 2-hydroxymethylpyridine and dmb is 3,3'-dimethyl-1-butanol), which exhibit magnetic bistability (hysteresis) and fast magnetization tunneling at low temperatures, properties which suggest they are single-molecule magnets (SMMs). The HFEPR spectra confirm spin S = 4 ground states and dominant uniaxial anisotropy (DSz(2), D ZFS) parameters. The broad EPR lines, meanwhile, may be attributed to ligand and solvent disorder, which results in additional distributions of microenvironments. In the case of complex 3, there are no solvate molecules in the structure, and only one distinct Ni 4 molecule in the lattice. Consequently, the HFEPR data for complex 3 are extremely sharp. As the temperature of a crystal of complex 3 is decreased, the HFEPR spectrum splits abruptly at approximately 46 K into two patterns with very slightly different ZFS parameters. Heat capacity data suggest that this is caused by a structural transition at 46.6 K. A single-crystal X-ray structure at 12(2) K indicates large thermal parameters on the terminal methyl groups of the dmb (3,3-dimethyl-1-butanol) ligand. Most likely there exists dynamic disorder of parts of the dmb ligand above 46.6 K; an order-disorder structural phase transition at 46.6 K then removes some of the motion. A further decrease in temperature (<6 K) leads to further fine structure splittings for complex 3. This behavior is thought to be due to the onset of short-range magnetic correlations/coherences between molecules caused by weak intermolecular magnetic exchange interactions. PMID:18284196

  14. Theoretical study of intermolecular energy transfer involving electronically excited molecules: He(1S) + H2(B 1?/sub u/+)

    International Nuclear Information System (INIS)

    To further understanding of gas phase collision dynamics involving electronically-excited molecules, a fully quantum mechanical study of He + H2(B 1?/sub u/+) was undertaken. Iterative natural orbital configuration interaction (CI) calculations were performed to obtain the interaction potential between He and H2(B 1?/sub u/+). The potential energy surface (PES) is highly anisotropic and has a van der Waals well of about 0.03 eV for C/sub 2v/ approach. Avoided PES crossings occur with He + H2(E,F 1?/sub g/+) and with He + H2(X 1?/sub g/+) and cause a local maximum and a deep minimum in the He + H2(B 1?/sub u/+) PES, respectively. The crossing with He + H2(X 1?/sub g/+) provides a mechanism for fluorescence quenching. The computed CI energies were combined with previous multi-reference double excitation CI calculations and fit with analytic functions for convenience in scattering calculations. Accurate dipole polarizabilities and quadrupole moment of H2(B 1?/sub u/+) were computed for use in the multipole expansion, which is the analytic form of the long-range PES. 129 refs., 28 figs., 35 tabs

  15. New Type of Dual Solid-State Thermochromism: Modulation of Intramolecular Charge Transfer by Intermolecular ?-? Interactions, Kinetic Trapping of the Aci-Nitro Group, and Reversible Molecular Locking

    Science.gov (United States)

    Naumov, Pan?e; Lee, Sang Cheol; Ishizawa, Nobuo; Jeong, Young Gyu; Chung, Ihn Hee; Fukuzumi, Shunichi

    2009-09-01

    When heated above room temperature, some crystalline polymorphs of the 1,3-bis(hydroxyalkylamino)-4,6-dinitrobenzenes (BDBn, n = 2-5), bis(hydroxyalkyl) analogues of the intramolecular charge-transfer molecule 1,3-diamino-4,6-dinitrobenzene, exhibit "dual" thermochromism: gradual color change from yellow to orange at lower temperatures, and sharp color change from orange to red at higher temperatures. These two thermochromic changes are related to different solid-state processes. When allowed to cool to room temperature, the yellow color of the thermochromic molecules with different alkyl length (n) is recovered with unexpectedly different kinetics, the order of the respective rate constants ranging from 10-7-10-6 s-1 for BDB2 to about 0.1 s-1 in the case of BDB3. The thermochromic mechanism and the reasons behind the different kinetics were clarified on the basis of detailed crystallographic characterization, kinetic thermoanalysis, and spectroscopic study of eight crystalline forms (seven polymorphs and one solvate). It was found that the polymorphism is due to the possibility of "locking" and "unlocking" of the alkyl arms by formation of a strong intramolecular hydrogen bond between the hydroxyl groups at their hydroxyl termini. The locking of BDB2, with shortest alkyl arms, is reversible and it can be controlled thermally; either of the two conformations can be obtained in the solid state by proper thermal treatment. By use of high temperature in situ single crystal X-ray diffraction analysis of BDB3, direct evidence was obtained that the gradual thermochromic change is related to increased distance and weakened ?-? interactions between the stacked benzene rings: the lattice expands preferably in the stacking direction, causing enhanced oscillator strength and red shift of the absorption edge of the intramolecular charge transfer transition. The second, sharp thermochromic change had been assigned previously to solid-solid phase transition triggered by intramolecular proton transfer of one amino proton to the nitro group, whereupon an aci-nitro form is thermally populated. Contrary to the numerous examples of solid thermochromic molecules based on either pericyclic reactions or keto-enol tautomerism, this system appears to be the first organic thermochromic family where the thermochromic change appears as an effect of intermolecular ?-? interactions and thermal intramolecular proton transfer to aromatic nitro group.

  16. Interactions in Dark Energy Models

    OpenAIRE

    Zhang, Yi; Hui LI; Gong, Yungui; Zhu, Zong-Hong

    2011-01-01

    We perform a full dynamical analysis by considering the interactions between dark energy and radiation, and dark energy and dark matter. We find that the interaction helps alleviate the coincidence problem for the quintessence model.

  17. Visualizing the orientational dependence of an intermolecular potential.

    Science.gov (United States)

    Sweetman, Adam; Rashid, Mohammad A; Jarvis, Samuel P; Dunn, Janette L; Rahe, Philipp; Moriarty, Philip

    2016-01-01

    Scanning probe microscopy can now be used to map the properties of single molecules with intramolecular precision by functionalization of the apex of the scanning probe tip with a single atom or molecule. Here we report on the mapping of the three-dimensional potential between fullerene (C60) molecules in different relative orientations, with sub-Angstrom resolution, using dynamic force microscopy (DFM). We introduce a visualization method which is capable of directly imaging the variation in equilibrium binding energy of different molecular orientations. We model the interaction using both a simple approach based around analytical Lennard-Jones potentials, and with dispersion-force-corrected density functional theory (DFT), and show that the positional variation in the binding energy between the molecules is dominated by the onset of repulsive interactions. Our modelling suggests that variations in the dispersion interaction are masked by repulsive interactions even at displacements significantly larger than the equilibrium intermolecular separation. PMID:26879386

  18. Strong orbital interaction in a weak CH-? hydrogen bonding system

    Science.gov (United States)

    Li, Jianfu; Zhang, Rui-Qin

    2016-01-01

    For the first time, the intermolecular orbital interaction between benzene and methane in the benzene-methane complex, a representative of weak interaction system, has been studied by us using ab initio calculations based on different methods and basis sets. Our results demonstrate obvious intermolecular orbital interaction between benzene and methane involving orbital overlaps including both occupied and unoccupied orbitals. Similar to interatomic orbital interaction, the intermolecular interaction of orbitals forms “bonding” and “antibonding” orbitals. In the interaction between occupied orbitals, the total energy of the complex increases because of the occupation of the antibonding orbital. The existence of the CH-? hydrogen bond between benzene and methane causes a decrease in rest energy level, leading to at least ?1.51?kcal/mol intermolecular interaction energy. Our finding extends the concept of orbital interaction from the intramolecular to the intermolecular regime and gives a reliable explanation of the deep orbital reformation in the benzene-methane complex. PMID:26927609

  19. Study of intermolecular interactions in the system of equilibrium catalytic transesterification of esters. 4. Fourier IR studies of the interaction of alcohols with esters

    International Nuclear Information System (INIS)

    Interaction of alcohols ROH with esters PhCOOR (R = Me, n-Bu, n-C7H15) in binary mixtures and in solutions in non-polar solvents was studies over a wide temperature range by means of Fourier IR spectroscopy. Even with alcohol taken in a great excess, two bands are observed in the region of ?CO vibrations. The low-frequency band, correspond to the ester molecules bonded by hydrogen bonds of the C=O...HO type. The high-frequence band is shifted by 3-5 cm-1 with respect to the ester ?CO band. The discreteness of the shift, indicates that an H-complex of one more type is formed between the alcohol and the ester. The analysis of data available allows one to conclude that the complex formation involves the alkoxyl oxygen atom of the ester. The formation enthalpies were determined for H-bond of n-BuOH with the esters and with transesterification catalysts B(OBu)3

  20. Application of multistep deactivation processes in the interpretation of intermolecular energy transfer following chemical activation by kinetic techniques

    International Nuclear Information System (INIS)

    Interpretation of vibrational energy transfer following kinetically controlled chemical activation is refined by incorporating multistep deactivation processes into the RRKM treatment of the excited molecule. The functional form of the initial primary product energy distribution used is based on that suggested by Bunker. This model is applied in interpreting collisional energy transfer from cyclobutane-t, chemically activated by nuclear recoil reaction. New low pressure experimental data are used to estimate the average energy of the nascent cyclobutane-t and the average step sizes for energy transfer to He, N2, CO2, and parent on collision based on a stepladder deactivation model. Step sizes found for cyclobutane, He, N2, and CO2 are 10.0, 0.5, 2.0, and 5.0 kcal, respectively. 4 figures, 3 tables

  1. Intermolecular interactions in nuclear magnetic resonance: medium shifts of the 1H and 13C nuclei in methane in the gas phase and in solution and of gaseous 3He

    International Nuclear Information System (INIS)

    An analysis has been carried out of the continuum and the binary collision models used in the description of NMR solvent shifts caused by Van der Waals intermolecular interactions. The basic assumption underlying the models, i.e. ? sub(w)= -BE2 (I) is examined. The possible effects on I of such phenomena as B anisotropy and field gradients are discussed, as well as the inadequacy of I in representing the true intermolecular shielding. A new expression for E2 is proposed, which in connection with I forms the bais of a modified binary collision model. The new E2 expression takes into account the dynamic character of the interaction. The major obstacle to the binary collision model, the requirement for accurate parameters for the intermolecular potential employed in the statistical-mechanical averaging, is alleviated by the establishment of priority rules to be used in the selection of these paramters. The proposed binary collision model and a collision model are used to interpret the 1H and 13C medium shifts of methane in the gas phase and in solution. The proton shift data conform equally well to either model; the 13C data indicate that a large solvent-dependent term contributes to the observed medium shifts in addition to I. Proton and 13C B parameters of methane in the gas phase and in solution are discussed. Preliminary results of 3He medium shifts as a function of gas density are presented. An extracted B parameter based on the proposed binary collision model appears to agree well with the result of a quantum-mechanical calculation of B for a 3He atom in a uniform static electric field. (LL)

  2. Desensitization of metastable intermolecular composites

    Energy Technology Data Exchange (ETDEWEB)

    Busse, James R. (South Fork, CO); Dye, Robert C. (Los Alamos, NM); Foley, Timothy J. (Los Alamos, NM); Higa, Kelvin T. (Ridgecrest, CA); Jorgensen, Betty S. (Jemez Springs, NM); Sanders, Victor E. (White Rock, NM); Son, Steven F. (Los Alamos, NM)

    2011-04-26

    A method to substantially desensitize a metastable intermolecular composite material to electrostatic discharge and friction comprising mixing the composite material with an organic diluent and removing enough organic diluent from the mixture to form a mixture with a substantially putty-like consistency, as well as a concomitant method of recovering the metastable intermolecular composite material.

  3. Intermolecular potential energy surface, microwave and infrared spectra of the Kr-CO 2 complex from ab initio calculations

    Science.gov (United States)

    Chen, Rong; Zhu, Hua; Xie, Daiqian

    2011-08-01

    We present a new potential energy surface for Kr-CO 2 which incorporates its dependence on the asymmetric Q3 normal mode with CO 2 in both ground ( ?3 = 0) and the first excited ( ?3 = 1) states were generated by integration of this potential over the Q3 coordinate. Each potential is found to have a T-shaped global minimum. The radial DVR/angular FBR method are applied to calculate the rovibrational energy levels. The calculated band origin shifts, microwave and infrared spectra are in good agreement with the available experiment values.

  4. Ab initio Intermolecular Potential Energy Surface and Calculation of Second Virial Coefficients for the Cl2–Cl2 Dimer

    Directory of Open Access Journals (Sweden)

    Nguyen Thanh Duoc

    2015-12-01

    Full Text Available The results presented in this paper are the ab initio intermolecular potentials and the second virial coefficient, B2 (T of the dimer Cl2-Cl2. These ab initio potentials were proposed by the quantum chemical calculations at high level of theory CCSD (T with basis sets of Dunning’s valence correlation-consistent aug-cc-pVmZ (m = 2, 3; these results were extrapolated to complete basis set limit aug-cc-pV23Z. The ab initio energies of complete basis set limit aug-cc-pV23Z resulted from the exponential extrapolation were used to construct the 5-site pair potential functions. The second virial coefficients for this dimer were predicted from those with four-dimensional integration. The second virial coefficients were also corrected to first-order quantum effects. The results turn out to be in good agreement with experimental data, if available, or with those from empirical correlation. The quality of ab initio 5-site potentials proved the reliability for prediction of molecular thermodynamic properties.

  5. Intermolecular vibrational energy redistribution in DCO (X^2A'): Classical-Quantum correspondence, dynamical assignments of highly excited states, and phase space transport

    CERN Document Server

    Semparithi, A

    2003-01-01

    Intermolecular dynamics of highly excited DCO (X^2A') is studied from a classical-quantum perspective using the effective spectroscopic Hamiltonian proposed recently by Trollch and Temps (Z. Phy. Chem. 215, 207 (2001)). This work focuses on the polyads P = 3 and P = 4 corresponding to excitation energies E_v ~ 5100 cm^-1 and 7000 cm^-1 respectively. The majority of states belonging to these polyads are dynamically assigned, despite extensive stochasticity in the classical phase space, using the recently proposed technique of level velocities. A wavelet based time-frequency analysis is used to reveal the nature of phase space transport and the relevant dynamical bottlenecks. The local frequency analysis clearly illustrates the existence of mode-specific IVR dynamics i.e., differing nature of the IVR dynamics ensuing from CO stretch and the DCO bend bright states. In addition the role of the weak Fermi resonance involving the CO stretch and DCO bend modes is investigated. A key feature of the present work is th...

  6. Mapping intermolecular bonding in C60

    Science.gov (United States)

    Sundqvist, Bertil

    2014-08-01

    The formation of intermolecular bonds in C60 has been investigated in detail at pressures below 2.2 GPa and up to 750 K. Fullerene samples were heated in a temperature gradient to obtain data on the formation of dimers and low-dimensional polymers along isobars. Intermolecular bonding was analyzed ex situ by Raman scattering, using both intramolecular modes and intermolecular stretching modes. Semi-quantitative reaction maps are given for the formation of dimers and chains. The activation energy for dimer formation decreases by 0.2 meV pm-1 when intermolecular distances decrease and dimer formation is noticeably affected by the rotational state of molecules. Above 400-450 K larger oligomers are formed; below 1.4 GPa most of these are disordered, with small domains of linear chains, but above this the appearance of stretching modes indicates the existence of ordered one-dimensional polymers. At the highest pressures and temperatures two-dimensional polymers are also observed.

  7. Electronic Mechanisms of Intra and Intermolecular J Couplings in Systems with C-H···O Interactions

    Directory of Open Access Journals (Sweden)

    Claudio N. Cavasotto

    2003-04-01

    Full Text Available Abstract: Correlation effects on the change of 1J(CH couplings in model systems I:NCH...H2O and II:CH4...H2O as a function of the H...O distance are discussed. RPA and SOPPA results follow a similar trend in system II. In system I RPA values decrease monotonously as the H...O distance decreases, while SOPPA ones exhibit flat maximum near equilibrium. Such different behavior is ascribed to the π-transmitted component. Intermolecular couplings at the equilibrium geometry of I are analyzed by means of the CLOPPA approach. The larger absolute value of 2hJ(CO compared to 1hJ(HO is found to arise from contributions involving a vacant LMO localized in the C-H...O moiety.

  8. Intermolecular and Intramolecular Excited State Charge Transfer

    OpenAIRE

    Eisenthal, Kenneth B.

    1983-01-01

    A primary mechanism of energy relaxation and chemical change in organic molecules in excited electronic states is charge transfer. 1 The charge transfer process can be intermolecular, involving an excited molecule and a neighboring molecule, one serving as an acceptor and the other as a donor molecule, or intramolecular, involving a charge redistribution in the excited molecule which produces a very large excited state dipole moment.In our investigations of the dynamics of these various charg...

  9. The role of intermolecular coupling in the photophysics of disordered organic semiconductors: Aggregate emission in regioregular polythiophene

    CERN Document Server

    Clark, J; Friend, R H; Spano, F C; Clark, Jenny; Silva, Carlos; Friend, Richard H.; Spano, Frank C.

    2007-01-01

    We address the role of intermolecular interactions in determining the nature of photoexcitations in the conjugated polymer regioregular poly(3-hexylthiophene). By means of temperature-dependent absorption and photoluminescence spectroscopy, we show that optical emission is overwhelmingly dominated by weakly coupled H-aggregates. The relative absorbance of the 0-0 and 0-1 vibronic peaks provides a powerfully simple means to extract the magnitude of the intermolecular coupling energy, which was found to be on the order of 15 meV.

  10. Transport properties and intermolecular forces (1) viscosity

    International Nuclear Information System (INIS)

    A semi-empirical procedure is introduced by means of which the like and unlike interaction parameters of an intermolecular potential of the form L.J. (n-6) can be obtained from the temperature dependence of the viscosity of pure gases and their binary mixtures. The potentials with n=7 to 90 are considered. The procedure is tested and proved successful for the Ar - Kr system. It is found that the best potential representing the interaction of this system is the L.J. (11.5-6). It reproduces the experimental results satisfactorily to within 4%

  11. Interfacial charge rearrangement and intermolecular interactions: Density-functional theory study of free-base porphine adsorbed on Ag(111) and Cu(111)

    Science.gov (United States)

    Müller, Moritz; Diller, Katharina; Maurer, Reinhard J.; Reuter, Karsten

    2016-01-01

    We employ dispersion-corrected density-functional theory to study the adsorption of tetrapyrrole 2H-porphine (2H-P) at Cu(111) and Ag(111). Various contributions to adsorbate-substrate and adsorbate-adsorbate interactions are systematically extracted to analyze the self-assembly behavior of this basic building block to porphyrin-based metal-organic nanostructures. This analysis reveals a surprising importance of substrate-mediated van der Waals interactions between 2H-P molecules, in contrast to negligible direct dispersive interactions. The resulting net repulsive interactions rationalize the experimentally observed tendency for single molecule adsorption.

  12. Interfacial charge rearrangement and intermolecular interactions: Density-functional theory study of free-base porphine adsorbed on Ag(111) and Cu(111)

    CERN Document Server

    Müller, Moritz; Maurer, Reinhard J; Reuter, Karsten

    2015-01-01

    We employ dispersion-corrected density-functional theory to study the adsorption of tetrapyrrole 2H-porphine (2H-P) at Cu(111) and Ag(111). Various contributions to adsorbate-substrate and adsorbate-adsorbate interactions are systematically extracted to analyze the self-assembly behavior of this basic building block to porphyrin-based metal-organic nanostructures. This analysis reveals a surprising importance of substrate-mediated van der Waals interactions between 2H-P molecules, in contrast to negligible direct dispersive interactions. The resulting net repulsive interactions rationalize the experimentally observed tendency for single molecule adsorption.

  13. Intermolecular Adhesion in Conjugated Polymers

    CERN Document Server

    Schmit, J D; Schmit, Jeremy D.; Levine, Alex J.

    2006-01-01

    Conjugated polymers are observed to aggregate in solution. To account for this observation we propose a inter-chain binding mechanism based on the intermolecular tunneling of the delocalized $\\pi$-electrons occurring at points where the polymers cross. This tunneling mechanism predicts specific bound structures of chain that depend on whether they are semiconducting or metallic. Semiconducting chains should form polyacene-like states exhibiting binding at every other site, while (doped) metallic chains can bind at each site. We also show that solitons co-localize with the intermolecular binding sites thereby strengthening the binding effect and investigate the conformational statistics of the resulting bimolecular aggregates.

  14. Intermolecular symmetry-adapted perturbation theory study of large organic complexes

    Energy Technology Data Exchange (ETDEWEB)

    Heßelmann, Andreas, E-mail: andreas.hesselmann@chemie.uni-erlangen.de [Lehrstuhl für Theoretische Chemie, Universität Erlangen-Nürnberg, Egerlandstr. 3, D-91058 Erlangen (Germany); Korona, Tatiana, E-mail: tatiana.korona@chem.uw.edu.pl [Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw (Poland)

    2014-09-07

    Binding energies for the complexes of the S12L database by Grimme [Chem. Eur. J. 18, 9955 (2012)] were calculated using intermolecular symmetry-adapted perturbation theory combined with a density-functional theory description of the interacting molecules. The individual interaction energy decompositions revealed no particular change in the stabilisation pattern as compared to smaller dimer systems at equilibrium structures. This demonstrates that, to some extent, the qualitative description of the interaction of small dimer systems may be extrapolated to larger systems, a method that is widely used in force-fields in which the total interaction energy is decomposed into atom-atom contributions. A comparison of the binding energies with accurate experimental reference values from Grimme, the latter including thermodynamic corrections from semiempirical calculations, has shown a fairly good agreement to within the error range of the reference binding energies.

  15. Intermolecular symmetry-adapted perturbation theory study of large organic complexes

    International Nuclear Information System (INIS)

    Binding energies for the complexes of the S12L database by Grimme [Chem. Eur. J. 18, 9955 (2012)] were calculated using intermolecular symmetry-adapted perturbation theory combined with a density-functional theory description of the interacting molecules. The individual interaction energy decompositions revealed no particular change in the stabilisation pattern as compared to smaller dimer systems at equilibrium structures. This demonstrates that, to some extent, the qualitative description of the interaction of small dimer systems may be extrapolated to larger systems, a method that is widely used in force-fields in which the total interaction energy is decomposed into atom-atom contributions. A comparison of the binding energies with accurate experimental reference values from Grimme, the latter including thermodynamic corrections from semiempirical calculations, has shown a fairly good agreement to within the error range of the reference binding energies

  16. Intermolecular symmetry-adapted perturbation theory study of large organic complexes

    Science.gov (United States)

    Heßelmann, Andreas; Korona, Tatiana

    2014-09-01

    Binding energies for the complexes of the S12L database by Grimme [Chem. Eur. J. 18, 9955 (2012)] were calculated using intermolecular symmetry-adapted perturbation theory combined with a density-functional theory description of the interacting molecules. The individual interaction energy decompositions revealed no particular change in the stabilisation pattern as compared to smaller dimer systems at equilibrium structures. This demonstrates that, to some extent, the qualitative description of the interaction of small dimer systems may be extrapolated to larger systems, a method that is widely used in force-fields in which the total interaction energy is decomposed into atom-atom contributions. A comparison of the binding energies with accurate experimental reference values from Grimme, the latter including thermodynamic corrections from semiempirical calculations, has shown a fairly good agreement to within the error range of the reference binding energies.

  17. Direct measurements of intermolecular forces by chemical force microscopy

    Science.gov (United States)

    Vezenov, Dmitri Vitalievich

    1999-12-01

    Detailed description of intermolecular forces is key to understanding a wide range of phenomena from molecular recognition to materials failure. The unique features of atomic force microscopy (AFM) to make point contact force measurements with ultra high sensitivity and to generate spatial maps of surface topography and forces have been extended to include measurements between well-defined organic molecular groups. Chemical modification of AFM probes with self-assembled monolayers (SAMs) was used to make them sensitive to specific molecular interactions. This novel chemical force microscopy (CFM) technique was used to probe forces between different molecular groups in a range of environments (vacuum, organic liquids and aqueous solutions); measure surface energetics on a nanometer scale; determine pK values of the surface acid and base groups; measure forces to stretch and unbind a short synthetic DNA duplex and map the spatial distribution of specific functional groups and their ionization state. Studies of adhesion forces demonstrated the important contribution of hydrogen bonding to interactions between simple organic functionalities. The chemical identity of the tip and substrate surfaces as well as the medium had a dramatic effect on adhesion between model monolayers. A direct correlation between surface free energy and adhesion forces was established. The adhesion between epoxy polymer and model mixed SAMs varied with the amount of hydrogen bonding component in the monolayers. A consistent interpretation of CFM measurements in polar solvents was provided by contact mechanics models and intermolecular force components theory. Forces between tips and surfaces functionalized with SAMs terminating in acid or base groups depended on their ionization state. A novel method of force titration was introduced for highly local characterization of the pK's of surface functional groups. The pH-dependent changes in friction forces were exploited to map spatially the changes in ionization state on SAM surfaces. The phase contrast in tapping mode AFM between chemically distinct monolayer regions and corresponding adhesion forces were found to be directly correlated. Thus, both friction and intermittent contact CFM images could be interpreted in terms of the strength of intermolecular interactions. CFM was also used to probe biomolecular interactions. Separation forces between complementary oligonucleotide strands were significantly larger than the forces measured between noncomplementary strands and were consistent with the unbinding of a single DNA duplex. CFM data provided a direct measure of the forces required to elastically deform, structurally-transform and separate well-defined, synthetic duplexes into single strand oligonucleotides.

  18. High energy interactions at cosmic ray energies

    International Nuclear Information System (INIS)

    As a summary of super high energy events and exotic phenomena observed in cosmic ray experiments, some trends in very high energy physics are discussed in this paper. The results show that (1) violation of scaling law in interaction character at above 100 TeV, (2) increase of P/sub t/ at above 100 TeV, and (3) existence of exisotic phenomena observed deep underground

  19. How resonance assists hydrogen bonding interactions: an energy decomposition analysis.

    Science.gov (United States)

    Beck, John Frederick; Mo, Yirong

    2007-01-15

    Block-localized wave function (BLW) method, which is a variant of the ab initio valence bond (VB) theory, was employed to explore the nature of resonance-assisted hydrogen bonds (RAHBs) and to investigate the mechanism of synergistic interplay between pi delocalization and hydrogen-bonding interactions. We examined the dimers of formic acid, formamide, 4-pyrimidinone, 2-pyridinone, 2-hydroxpyridine, and 2-hydroxycyclopenta-2,4-dien-1-one. In addition, we studied the interactions in beta-diketone enols with a simplified model, namely the hydrogen bonds of 3-hydroxypropenal with both ethenol and formaldehyde. The intermolecular interaction energies, either with or without the involvement of pi resonance, were decomposed into the Hitler-London energy (DeltaEHL), polarization energy (DeltaEpol), charge transfer energy (DeltaECT), and electron correlation energy (DeltaEcor) terms. This allows for the examination of the character of hydrogen bonds and the impact of pi conjugation on hydrogen bonding interactions. Although it has been proposed that resonance-assisted hydrogen bonds are accompanied with an increasing of covalency character, our analyses showed that the enhanced interactions mostly originate from the classical dipole-dipole (i.e., electrostatic) attraction, as resonance redistributes the electron density and increases the dipole moments in monomers. The covalency of hydrogen bonds, however, changes very little. This disputes the belief that RAHB is primarily covalent in nature. Accordingly, we recommend the term "resonance-assisted binding (RAB)" instead of "resonance-assisted hydrogen bonding (RHAB)" to highlight the electrostatic, which is a long-range effect, rather than the electron transfer nature of the enhanced stabilization in RAHBs. PMID:17143867

  20. Crystal structure of an intermolecular 2:1 complex between adenine and thymine. Evidence for both Hoogsteen and 'quasi-Watson-Crick' interactions.

    Science.gov (United States)

    Chandrasekhar, Sosale; Naik, Tangali R Ravikumar; Nayak, Susanta K; Row, Tayur N Guru

    2010-06-15

    The titled complex, obtained by co-crystallization (EtOH/25 degrees C), is apparently the only known complex of the free bases. Its crystal structure, as determined by X-ray diffraction at both 90 K and 313 K, showed that one A-T pair involves a Hoogsteen interaction, and the other a Watson-Crick interaction but only with respect to the adenine unit. The absence of a clear-cut Watson-Crick base pair raises intriguing questions about the basis of the DNA double helix. PMID:20493694

  1. Ab initio potential energy curves for H2-H2+ interactions

    International Nuclear Information System (INIS)

    Potential energy surfaces for the ground and excited state interactions of H2 with H2+ have been calculated using SCF and CI techniques. Six geometries have been studied, in which the H2 and H2+ bond lengths were restricted to their equilibrium values, and the intermolecular H2-H2+ distance was varied from 0.5 to 20 au. Ground state binding energies range from 0.4 to 1.6 eV. The most stable geometry was found to be a perpendicular orientation with the H2+ molecule lying on a line bisecting the H2 bond axis. (Auth.)

  2. Interacting Induced Dark Energy Model

    CERN Document Server

    Bahrehbakhsh, Amir F

    2016-01-01

    Similar to the idea of the brane world scenarios, but based on the approach of the induced matter theory, for a non--vacuum five--dimensional version of general relativity, we propose a model in which the conventional matter sources considered as all kind of the matter (the baryonic and dark) and the induced terms emerging from the extra dimension supposed to be as dark energy. Then we investigate the FLRW type cosmological equations and illustrate that the model is capable to explain respectively the deceleration and then acceleration eras of the universe expansion with an interacting term between the matter and dark energy.

  3. Fixed points in interacting dark energy models

    OpenAIRE

    Chen, Xi-ming; Gong, Yungui

    2008-01-01

    The dynamical behaviors of two interacting dark energy models are considered. In addition to the scaling attractors found in the non-interacting quintessence model with exponential potential, new accelerated scaling attractors are also found in the interacting dark energy models. The coincidence problem is reduced to the choice of parameters in the interacting dark energy models.

  4. Molecular near-field antenna effect in resonance hyper-Raman scattering: Intermolecular vibronic intensity borrowing of solvent from solute through dipole-dipole and dipole-quadrupole interactions

    International Nuclear Information System (INIS)

    We quantitatively interpret the recently discovered intriguing phenomenon related to resonance Hyper-Raman (HR) scattering. In resonance HR spectra of all-trans-?-carotene (?-carotene) in solution, vibrations of proximate solvent molecules are observed concomitantly with the solute ?-carotene HR bands. It has been shown that these solvent bands are subject to marked intensity enhancements by more than 5 orders of magnitude under the presence of ?-carotene. We have called this phenomenon the molecular-near field effect. Resonance HR spectra of ?-carotene in benzene, deuterated benzene, cyclohexane, and deuterated cyclohexane have been measured precisely for a quantitative analysis of this effect. The assignments of the observed peaks are made by referring to the infrared, Raman, and HR spectra of neat solvents. It has been revealed that infrared active and some Raman active vibrations are active in the HR molecular near-field effect. The observed spectra in the form of difference spectra (between benzene/deuterated benzene and cyclohexane/deuterated cyclohexane) are quantitatively analyzed on the basis of the extended vibronic theory of resonance HR scattering. The theory incorporates the coupling of excited electronic states of ?-carotene with the vibrations of a proximate solvent molecule through solute–solvent dipole–dipole and dipole–quadrupole interactions. It is shown that the infrared active modes arise from the dipole–dipole interaction, whereas Raman active modes from the dipole–quadrupole interaction. It is also shown that vibrations that give strongly polarized Raman bands are weak in the HR molecular near-field effect. The observed solvent HR spectra are simulated with the help of quantum chemical calculations for various orientations and distances of a solvent molecule with respect to the solute. The observed spectra are best simulated with random orientations of the solvent molecule at an intermolecular distance of 10 Å

  5. Molecular near-field antenna effect in resonance hyper-Raman scattering: Intermolecular vibronic intensity borrowing of solvent from solute through dipole-dipole and dipole-quadrupole interactions

    Energy Technology Data Exchange (ETDEWEB)

    Shimada, Rintaro; Hamaguchi, Hiro-o, E-mail: hhama@nctu.edu.tw [Department of Applied Chemistry and Institute of Molecular Science, National Chiao Tung University, 1001 University Road, Hsinchu 30010, Taiwan (China)

    2014-05-28

    We quantitatively interpret the recently discovered intriguing phenomenon related to resonance Hyper-Raman (HR) scattering. In resonance HR spectra of all-trans-?-carotene (?-carotene) in solution, vibrations of proximate solvent molecules are observed concomitantly with the solute ?-carotene HR bands. It has been shown that these solvent bands are subject to marked intensity enhancements by more than 5 orders of magnitude under the presence of ?-carotene. We have called this phenomenon the molecular-near field effect. Resonance HR spectra of ?-carotene in benzene, deuterated benzene, cyclohexane, and deuterated cyclohexane have been measured precisely for a quantitative analysis of this effect. The assignments of the observed peaks are made by referring to the infrared, Raman, and HR spectra of neat solvents. It has been revealed that infrared active and some Raman active vibrations are active in the HR molecular near-field effect. The observed spectra in the form of difference spectra (between benzene/deuterated benzene and cyclohexane/deuterated cyclohexane) are quantitatively analyzed on the basis of the extended vibronic theory of resonance HR scattering. The theory incorporates the coupling of excited electronic states of ?-carotene with the vibrations of a proximate solvent molecule through solute–solvent dipole–dipole and dipole–quadrupole interactions. It is shown that the infrared active modes arise from the dipole–dipole interaction, whereas Raman active modes from the dipole–quadrupole interaction. It is also shown that vibrations that give strongly polarized Raman bands are weak in the HR molecular near-field effect. The observed solvent HR spectra are simulated with the help of quantum chemical calculations for various orientations and distances of a solvent molecule with respect to the solute. The observed spectra are best simulated with random orientations of the solvent molecule at an intermolecular distance of 10 Å.

  6. Important role of molecular packing and intermolecular interactions in two polymorphs of (Z)-2-phenyl-3-(4-(pyridin-2-yl)phenyl)acrylonitrile. Preparation, structures, and optical properties

    Science.gov (United States)

    Percino, M. Judith; Cerón, Margarita; Ceballos, Paulina; Soriano-Moro, Guillermo; Castro, M. Eugenia; Chapela, Víctor M.; Bonilla-Cruz, José; Reyes-Reyes, Marisol; López-Sandoval, Román; Siegler, Maxime A.

    2014-12-01

    The novel compound Z-2-phenyl-3-(4-(pyridin-2-yl)phenyl)acrylonitrile (PPyPAN) was synthesized from the condensation reaction between phenylacetonitrile and 4-(pyridin-2-yl)benzaldehyde. This compound crystallizes in two forms: polymorph I (triclinic, P - 1, Z? = 2) and polymorph II (orthorhombic, Pbc21, Z? = 2). The molecular structures and optical properties of the two polymorphs have been characterized via1H NMR, EI, FTIR, UV-Vis spectroscopy, DSC, single-crystal and XRPD. The molecular structure, packing properties, and intermolecular interactions were examined for both polymorphs of PPyPAN in order to interpret the emission properties. A subtle change in the molecular conformation (e.g., a rotation around single Csbnd C bonds) found for both polymorph plays an important role in their solid-state properties. The structure and optical properties of the new structures were well characterized and showed unique features for both polymorphic phases. For phase I, we observed an excitation spectrum with an ?ex at 325-346 nm, which is the maximum excitation or absorption wavelength for the lowest So ? S1 transition, which is characteristic to the ?-?* transition, and an emission spectrum with an ?emmax at 454 nm. For phase II, the excitation spectrum showed an ?exmax at 325 nm, whereas the ?emmax showed a red-shift to 492 nm.

  7. Metal-Arene Complexes with Indolo[3,2-c]-quinolines: Effects of Ruthenium vs Osmium and Modifications of the Lactam Unit on Intermolecular Interactions, Anticancer Activity, Cell Cycle, and Cellular Accumulation.

    Science.gov (United States)

    Filak, Lukas K; Göschl, Simone; Heffeter, Petra; Ghannadzadeh Samper, Katia; Egger, Alexander E; Jakupec, Michael A; Keppler, Bernhard K; Berger, Walter; Arion, Vladimir B

    2013-02-11

    Six novel ruthenium(II)- and osmium(II)-arene complexes with three modified indolo[3,2-c]quinolines have been synthesized in situ starting from 2-aminoindoloquinolines and 2-pyridinecarboxaldehyde in the presence of [M(p-cymene)Cl(2)](2) (M = Ru, Os) in ethanol. All complexes have been characterized by elemental analysis, spectroscopic techniques ((1)H, (13)C NMR, IR, UV-vis), and ESI mass spectrometry, while four complexes were investigated by X-ray diffraction. The complexes have been tested for antiproliferative activity in vitro in A549 (non-small cell lung), SW480 (colon), and CH1 (ovarian) human cancer cell lines and showed IC(50) values between 1.3 and >80 ?M. The effects of Ru vs Os and modifications of the lactam unit on intermolecular interactions, antiproliferative activity, and cell cycle are reported. One ruthenium complex and its osmium analogue have been studied for anticancer activity in vivo applied both intraperitoneally and orally against the murine colon carcinoma model CT-26. Interestingly, the osmium(II) complex displayed significant growth-inhibitory activity in contrast to its ruthenium counterpart, providing stimuli for further investigation of this class of compounds as potential antitumor drugs. PMID:23431223

  8. Metal–Arene Complexes with Indolo[3,2-c]-quinolines: Effects of Ruthenium vs Osmium and Modifications of the Lactam Unit on Intermolecular Interactions, Anticancer Activity, Cell Cycle, and Cellular Accumulation

    Science.gov (United States)

    2013-01-01

    Six novel ruthenium(II)– and osmium(II)–arene complexes with three modified indolo[3,2-c]quinolines have been synthesized in situ starting from 2-aminoindoloquinolines and 2-pyridinecarboxaldehyde in the presence of [M(p-cymene)Cl2]2 (M = Ru, Os) in ethanol. All complexes have been characterized by elemental analysis, spectroscopic techniques (1H, 13C NMR, IR, UV–vis), and ESI mass spectrometry, while four complexes were investigated by X-ray diffraction. The complexes have been tested for antiproliferative activity in vitro in A549 (non-small cell lung), SW480 (colon), and CH1 (ovarian) human cancer cell lines and showed IC50 values between 1.3 and >80 ?M. The effects of Ru vs Os and modifications of the lactam unit on intermolecular interactions, antiproliferative activity, and cell cycle are reported. One ruthenium complex and its osmium analogue have been studied for anticancer activity in vivo applied both intraperitoneally and orally against the murine colon carcinoma model CT-26. Interestingly, the osmium(II) complex displayed significant growth-inhibitory activity in contrast to its ruthenium counterpart, providing stimuli for further investigation of this class of compounds as potential antitumor drugs. PMID:23431223

  9. [Effect of stress actions on some hematologic and biochemical parameters of rat blood and on energetic intermolecular interactions in lipid extract under effect of light radiation].

    Science.gov (United States)

    Zabelinski?, S A; Chebotareva, M A; Tavrovskaia, T V; Skverchinskaia, E A; Shukoliukova, E P; Maslov, M N; Krivchenko, A I

    2012-01-01

    Comparative study has been carried of effect of the three-day long starvation, running, and their combination on morphological parameters of rat blood, lipid metabolism, and activity of blood Na,K-ATPase. Different effect has been shown of these stress factors on the blood erythrocyte composition. Starvation is accompanied by the most pronounced release of stored erythrocyte into blood, which results in a significant decrease both of the total amount of reticulocytes and the complete absence of reticulocytes of the I stage of maturity (the youngest). The running on treadmill led to a significant increase of the total amount of blood reticulocytes and to multiple increase of immature reticulocytes (RC-I and RC-II), which can indicate some stress of the bone marrow erythroid stem line. The curve of acid resistance of blood reticulocytes has shown the animal to experience the greatest stress at a combination of starvation and running. Starvation and running produced different effects on blood lipid characteristics. The content of triacylglycerides (TAG) in blood rose by 40% at starvation and decreased by 30% at running, a similar tendency being found for index of atherogeneity. The fatty acid composition of blood phospholipids at running and its combination with starvation practically did not differ from control. A change of Na,K-ATPase, which is so characteristic of reaction to various kinds of stress, sharply fell at starvation (by 22%), but increased at running (by 13%) and decreased markedly at combination of these actions. Absorption spectra of lipid extracts of the whole blood of the rats submitted to various stress actions showed that extracted from blood (at different amount depending on the kind of action) is an organic substance with coupled bonds, which absorbs light in the diapason of 360-620 nm. The absorption of light in the diapason of 400-410 nm has been found to belong to the Soret band of ferroheme and ferriheme. The shift of the Soret band indicates electron transitions in the iron cation. By the change and disappearance of the Soret band, it is possible to judge about the processes occurring in the lipid extract. The disappearance of the Soret band in the lipid extract indicates formation in it of steady radicals as a result of the ferriheme disintegration due to accumulation of energy in porphyrin, which does not seem to occur in the blood cell membranes. The iron atom in the ferriheme molecule is known to accept electron and yields a part of energy probably to porphyrin. Then ferriheme yields electron and becomes ferriheme with excess of energy in porphyrin. Hence, at admission of the next electron to the iron atom the porphyrin molecule is to get rid of the energy obtained earlier to prevent its disintegration. The heme is possible to be an accumulator and distributor of energy in tissue. PMID:23401964

  10. Theoretical investigation of the ethylene dimer: interaction energy and dipole moment.

    Science.gov (United States)

    Kalugina, Yulia N; Cherepanov, Victor N; Buldakov, Mikhail A; Zvereva-Loëte, Natalia; Boudon, Vincent

    2012-01-30

    The interaction potential energy and the interaction-induced dipole moment surfaces of the van der Waals C(2)H(4)-C(2)H(4) complex has been calculated for a broad range of intermolecular separations and configurations in the approximation of rigid interacting molecules. The calculations have been carried out using high-level ab initio theory with the aug-cc-pVTZ basis set and within the framework of the analytical description of long-range interactions between ethylene molecules. Binding energy for the most stable configuration of the C(2)H(4)-C(2)H(4) complex was calculated at the CCSD(T)/CBS level of theory. The harmonic fundamental vibrational frequencies for this complex were calculated at the MP2 level of theory. PMID:22102329

  11. Neutral CH3Cl and CH3Br clusters studied by X-ray photoelectron spectroscopy and modeling: Insight to intermolecular interactions and structure

    International Nuclear Information System (INIS)

    Single-component clusters of methyl chloride and methyl bromide have been produced by adiabatic expansion and their C 1s, Cl 2p and Br 3d photoelectron spectra recorded using synchrotron radiation and a high-resolution electron analyzer. The experimentally observed cluster-to-monomer shifts in core-level ionization energies are interpreted in terms of theoretical models based on molecular dynamics (MD) in conjunction with polarizable force fields developed and validated in the course of this work. MD simulations have also been used to explore the global and local structure of the clusters, providing evidence for a predominance of anti-parallel, head-to-tail arrangement of neighboring molecules. Whereas the cluster-to-monomer shifts are strongly dominated by polarization effects, the polarization contribution is very similar for ionization of carbon and the halogen, respectively. The difference in cluster shifts between the two ionization sites within the same molecule, C vs. Cl or C vs. Br, is thus determined by permanent electrostatic moments, i.e. the magnitude and direction of the permanent dipole moment and the local alignment of dipoles

  12. Vibrational assignments, spectroscopic investigation (FT-IR and FT-Raman), NBO, MEP, HOMO?LUMO analysis and intermolecular hydrogen bonding interactions of 7-fluoroisatin, 7-bromoisatin and 1-methylisatin ? A comparative study

    Science.gov (United States)

    Polat, Turgay; Bulut, Fatih; Ar?can, Ilknur; Kandemirli, Fatma; Yildirim, Gürcan

    2015-12-01

    In this comprehensive study, theoretical and experimental studies were carried out on 7-fluoroisatin, 7-bromoisatin and 1-methylisatin using FT-Raman and FT-IR spectra. The optimized geometrical parameters and theoretical vibrational frequencies were calculated by means of density functional theory (DFT/B3LYP) with 6-311++G(d,p) basis set based on scaled quantum mechanical (SQM) method for the first time. The relative abundances of the possible tautomers or conformers found were calculated with respect to the Boltzmann distribution. Moreover, the harmonic vibrational frequencies including IR and Raman intensities, thermodynamic and electronic parameters were computed in detail. The effects of substituents -F, ?Br and -CH3 on the crucial characteristics pertaining to the title compound of isatin were investigated, and the obtained data were compared with each other. Natural bond orbital (NBO) analysis was applied to study the stability arising from charge delocalization along with the compound. The chemical reactivity parameters (chemical hardness and softness, electronegativity, chemical potential and electrophilicity index) were discussed clearly. The HOMO and LUMO energies determined showed that the serious charge transfer occurs in the title molecules studied. Furthermore, the size, shape, charge density distributions and chemical reactivity sites belonging to the molecules were obtained by mapping electron density isosurface with electrostatic potential surfaces (ESP). Additionally, the hydrogen-bonded complexes were simulated to describe the roles of intermolecular hydrogen bonding on the molecular structures and vibrational frequencies.

  13. Weak interactions at high energies

    International Nuclear Information System (INIS)

    Review lectures are presented on the phenomenological implications of the modern spontaneously broken gauge theories of the weak and electromagnetic interactions, and some observations are made about which high energy experiments probe what aspects of gauge theories. Basic quantum chromodynamics phenomenology is covered including momentum dependent effective quark distributions, the transverse momentum cutoff, search for gluons as sources of hadron jets, the status and prospects for the spectroscopy of fundamental fermions and how fermions may be used to probe aspects of the weak and electromagnetic gauge theory, studies of intermediate vector bosons, and miscellaneous possibilities suggested by gauge theories from the Higgs bosons to speculations about proton decay. 187 references

  14. High-Energy Neutrino Interactions

    CERN Multimedia

    2002-01-01

    This experiment studies neutrino interactions in iron at the highest available energies using the narrow-band neutrino beam N3 and the wide-band neutrino beam N1. The basis of the detector is a massive target-calorimeter in which the energy deposited by a neutrino (or antineutrino) is measured by electronic techniques and the momentum of outgoing muons is determined by magnetic deflection. The detector is constructed in the form of a 20 m long iron-cored toroidal magnet, composed of modules of length 70~cm and 90~cm, and of 3.75~m diameter. Drift chambers placed in between each module measure the trajectory of muons from the neutrino interactions. The modules are of three types. The first ten modules are constructed of 2.5~cm iron plates with 20~scintillator planes inserted between the plates. The next five modules are constructed of 5~cm plates with 15~planes of scintillator and the last six modules are constructed of 15~cm plates with 5~planes of scintillators. The total mass of the detector is @=~1400 tons...

  15. Quantum structure of the intermolecular proton bond.

    Science.gov (United States)

    Roscioli, J R; McCunn, L R; Johnson, M A

    2007-04-13

    A proton shared between two closed-shell molecules, [A.H+.B], constitutes a ubiquitous soft binding motif in biological processes. The vibrational transitions associated with the shared proton, which provide a direct probe of this interaction, have been extensively studied in the condensed phase but have yielded only limited detailed information because of their diffuse character. We exploited recent advances in gas-phase ion spectroscopy to identify sharp spectral features that can be assigned to both the shared proton and the two tethered molecules in a survey of 18 cold, isolated [A.H+.B] ions. These data yield a picture of the intermolecular proton bond at a microscopic scale, facilitating analysis of its properties within the context of a floppy polyatomic molecule. PMID:17431174

  16. Interfacial Interactions in Polyurethane Elastomer - Poly(vinyl chloride) Blends

    OpenAIRE

    Malysheva T.

    2014-01-01

    An influence of chemical structure of hard segment in poly((urethane-urea)s (PUU) on intermolecular interactions in PUU/poly(vinyl chloride) (PVC) composite systems, as well as their morphology and mechanical properties has been studies. A formation of intra-and intermolecular interaction in the PUU/LiCl and PUU/PVC systems was determined by FTIR. Structural asymmetry and weakening intermolecular interactions in PUU promotes an increasing energy of interfacial H-bonds in PUU/PVC blends. Obtai...

  17. Interacting agegraphic tachyon model of dark energy

    International Nuclear Information System (INIS)

    Scalar-field dark energy models like tachyon are often regarded as an effective description of an underlying theory of dark energy. In this Letter, we implement the interacting agegraphic dark energy models with tachyon field. We demonstrate that the interacting agegraphic evolution of the universe can be described completely by a single tachyon scalar field. We thus reconstruct the potential as well as the dynamics of the tachyon field according to the evolutionary behavior of interacting agegraphic dark energy.

  18. New type of dual solid-state thermochromism: modulation of intramolecular charge transfer by intermolecular pi-pi interactions, kinetic trapping of the aci-nitro group, and reversible molecular locking.

    Science.gov (United States)

    Naumov, Pance; Lee, Sang Cheol; Ishizawa, Nobuo; Jeong, Young Gyu; Chung, Ihn Hee; Fukuzumi, Shunichi

    2009-10-22

    When heated above room temperature, some crystalline polymorphs of the 1,3-bis(hydroxyalkylamino)-4,6-dinitrobenzenes (BDBn, n = 2-5), bis(hydroxyalkyl) analogues of the intramolecular charge-transfer molecule 1,3-diamino-4,6-dinitrobenzene, exhibit "dual" thermochromism: gradual color change from yellow to orange at lower temperatures, and sharp color change from orange to red at higher temperatures. These two thermochromic changes are related to different solid-state processes. When allowed to cool to room temperature, the yellow color of the thermochromic molecules with different alkyl length (n) is recovered with unexpectedly different kinetics, the order of the respective rate constants ranging from 10(-7)-10(-6) s(-1) for BDB2 to about 0.1 s(-1) in the case of BDB3. The thermochromic mechanism and the reasons behind the different kinetics were clarified on the basis of detailed crystallographic characterization, kinetic thermoanalysis, and spectroscopic study of eight crystalline forms (seven polymorphs and one solvate). It was found that the polymorphism is due to the possibility of "locking" and "unlocking" of the alkyl arms by formation of a strong intramolecular hydrogen bond between the hydroxyl groups at their hydroxyl termini. The locking of BDB2, with shortest alkyl arms, is reversible and it can be controlled thermally; either of the two conformations can be obtained in the solid state by proper thermal treatment. By use of high temperature in situ single crystal X-ray diffraction analysis of BDB3, direct evidence was obtained that the gradual thermochromic change is related to increased distance and weakened pi-pi interactions between the stacked benzene rings: the lattice expands preferably in the stacking direction, causing enhanced oscillator strength and red shift of the absorption edge of the intramolecular charge transfer transition. The second, sharp thermochromic change had been assigned previously to solid-solid phase transition triggered by intramolecular proton transfer of one amino proton to the nitro group, whereupon an aci-nitro form is thermally populated. Contrary to the numerous examples of solid thermochromic molecules based on either pericyclic reactions or keto-enol tautomerism, this system appears to be the first organic thermochromic family where the thermochromic change appears as an effect of intermolecular pi-pi interactions and thermal intramolecular proton transfer to aromatic nitro group. PMID:19780605

  19. Desensitization and recovery of metastable intermolecular composites

    Energy Technology Data Exchange (ETDEWEB)

    Busse, James R. (South Fork, CO); Dye, Robert C. (Los Alamos, NM); Foley, Timothy J. (Los Alamos, NM); Higa, Kelvin T. (Ridgecrest, CA); Jorgensen, Betty S. (Jemez Springs, NM); Sanders, Victor E. (White Rock, NM); Son, Steven F. (Los Alamos, NM)

    2010-09-07

    A method to substantially desensitize a metastable intermolecular composite material to electrostatic discharge and friction comprising mixing the composite material with an organic diluent and removing enough organic diluent from the mixture to form a mixture with a substantially putty-like consistency, as well as a concomitant method of recovering the metastable intermolecular composite material.

  20. Interpreting the widespread nonlinear force spectra of intermolecular bonds

    OpenAIRE

    Friddle, Raymond W.; Noy, Aleksandr; De Yoreo, James J.

    2012-01-01

    Single molecule force spectroscopy probes the strength, lifetime, and energetic details of intermolecular interactions in a simple experiment. A growing number of these studies have reported distinctly nonlinear trends in rupture force with loading rate that are typically explained in conventional models by invoking complex escape pathways. Recent analyses suggested that these trends should be expected even for simple barriers based on the basic assumptions of bond rupture dynamics and thus m...

  1. Configuration Interactions Constrained by Energy Density Functionals

    CERN Document Server

    Brown, B Alex; Hjorth-Jensen, Morten

    2010-01-01

    A new method for constructing a Hamiltonian for configuration interaction calculations with constraints to energies of spherical configurations obtained with energy-density-functional (EDF) methods is presented. This results in a unified model that reproduced the EDF binding-energy in the limit of single-Slater determinants, but can also be used for obtaining energy spectra and correlation energies with renormalized nucleon-nucleon interactions. The three-body and/or density-dependent terms that are necessary for good nuclear saturation properties are contained in the EDF. Applications to binding energies and spectra of nuclei in the region above 208Pb are given.

  2. Theoretical study on the effect of solvent and intermolecular fluctuations in proton transfer reactions: General theory

    International Nuclear Information System (INIS)

    We present a theory of proton transfer reactions which incorporate the modulation of the proton's potential surface by intermolecular vibrations and the effect of coupling to solvent degree of freedom. The proton tunnels between states corresponding to it being localized in the wells of a double minimum potential. The resulting tunnel splitting depends on the intermolecular separation. The solvent response to the proton's charge is modeled as that of a continuous distribution of harmonic oscillators and the intermolecular stretching mode is also damped because of the interaction with solvent degree of freedom. The transition rate is given by the Fermi Gorlden Rule expression

  3. High-energy cosmic ray interactions

    International Nuclear Information System (INIS)

    Research into hadronic interactions and high-energy cosmic rays are closely related. On one hand--due to the indirect observation of cosmic rays through air showers--the understanding of hadronic multiparticle production is needed for deriving the flux and composition of cosmic rays at high energy. On the other hand the highest energy particles from the universe allow us to study the characteristics of hadronic interactions at energies far beyond the reach of terrestrial accelerators. This is the summary of three introductory lectures on our current understanding of hadronic interactions of cosmic rays.

  4. Intermolecular electronic and vibrational energy transfer from the single vibronic levels of p-difluorobenzene (1B2/sub u/) to cyclobutanone

    International Nuclear Information System (INIS)

    An attempt has been made to measure the singlet--singlet electronic energy transfer rates from 17 single vibronic levels (SVL) of p-C6H4F2(1B2/sub u/) to cyclobutanone. No variation in the energy transfer cross sections have been found for the 17 SVL transitions, and an average value of 103 A2 (?sigma/sub c/2) is obtained. This value is nearly identical to the value obtained for the vibrationally relaxed, thermal levels. The reason for the lack of variation is suggested to be the consequence of rapid, intramolecular vibrational energy redistribution induced by collisional perturbation

  5. Molecular simulation of fluids with non-identical intermolecular potentials: Thermodynamic properties of 10-5 + 12-6 Mie potential binary mixtures

    International Nuclear Information System (INIS)

    General methods for combining interactions between particles characterised by non-identical intermolecular potentials are investigated. The combination methods are tested by performing molecular dynamics simulations to determine the pressure, energy, isochoric and isobaric heat capacities, thermal expansion coefficient, isothermal compressibility, Joule-Thomson coefficient, and speed of sound of 10-5 + 12-6 Mie potential binary mixtures. In addition to the two non-identical Mie potentials, mixtures are also studied with non-identical intermolecular parameters. The combination methods are compared with results obtained by simply averaging the Mie exponents. When either the energy or size parameters are non-identical, very significant differences emerge in the thermodynamic properties predicted by the alternative combination methods. The isobaric heat capacity is the thermodynamic property that is most affected by the relative magnitude of the intermolecular potential parameters and the method for combining non-identical potentials. Either the arithmetic or geometric combination of potentials provides a simple and effective way of performing simulations involving mixtures of components characterised by non-identical intermolecular potentials, which is independent of their functional form

  6. Ferroelastic and ferroelectric phase transition in a molecular crystal : tanane - 3. — From ab initio computation of the intermolecular forces to statistical mechanics of the transition

    OpenAIRE

    Legrand, J F; Lajzerowicz, J.; Lajzerowicz-Bonneteau, J.; Capiomont, A.

    1982-01-01

    On the basis of structural data of the disordered tetragonal phase of tanane, the Van der Waals intermolecular forces are computed for the 16 nearest neighbours of a given molecule. Considering first the molecular ordering in a « rigid » tetragonal lattice, the pair energies between neighbouring molecules are analysed within a pseudo-spin formalism which shows that the main ordering interactions define linear chains of molecules along the ferroelectric Z-axis. As there is no exact procedure f...

  7. Origin of the low-viscosity of [emim][(FSO2)2N] ionic liquid and its lithium salt mixture: experimental and theoretical study of self-diffusion coefficients, conductivities, and intermolecular interactions.

    Science.gov (United States)

    Tsuzuki, Seiji; Hayamizu, Kikuko; Seki, Shiro

    2010-12-16

    The temperature-dependent viscosity, ionic conductivity, and self-diffusion coefficients of an ionic liquid, 1-ethyl-3-methylimidazolium bis(fluorosulfonyl)amide ([emim][FSA]), and its Li salt mixture were studied with reference to emim bis(trifluoromethyl-sulfonyl)amide ([emim][TFSA]) systems. The stabilization energies for the formation of the FSA(-) complexes with emim(+) and Li(+) were calculated by the MP2/6-311G** level ab initio method. The stabilization energies calculated for the FSA(-) complexes with emim(+) and Li(+) (-77.0 and -134.3 kcal/mol) were smaller than those for the corresponding TFSA(-) complexes (-78.8 and -137.2 kcal/mol). The weaker electrostatic and induction interactions are the causes of the smaller interaction energies for the FSA(-) complexes. The weaker interaction between the FSA(-) and emim(+) can be one of the causes of the lower viscosity of the [emim][FSA] ionic liquid compared with that of the [emim][TFSA] ionic liquid. The weaker interaction between the FSA(-) and Li(+) compared with that between the TFSA(-) and Li(+) explains the fact that the addition of Li salt to the [emim][FSA] ionic liquid induces a little increase of the viscosity and a little decrease of the ionic conductivity and self-diffusion coefficients of ions. The FSA(-) in the Li[FSA] complex prefers the cis form due to the stronger attraction and smaller deformation energy of the cis-FSA(-) compared with the trans-FSA(-). PMID:21080680

  8. Intermolecular potentials for ?-glycine from Raman and infrared scattering measurements

    International Nuclear Information System (INIS)

    The frequencies of intermolecular modes in ?-glycine-d0 and -d5 have been measured at 300 and 85 K by Raman and infrared scattering techniques. These frequencies were analyzed in terms of simple analytic interatomic potentials. Buckingham potentials were assumed for the nonbonded and hydrogen-bond interactions, and Coulomb and screened Coulomb potentials were assumed for the electrostatic interactions. The observed frequencies are well described by the simple model and the parameters of the hydrogen-bond potentials and the molecular charge distribution were determined from the analysis. 17 references, 4 figures, 5 tables

  9. Low energy light ion interactions

    Science.gov (United States)

    Cerutti, F.; Ballarini, F.; Battistoni, G.; Colleoni, P.; Ferrari, A.; Förtsch, S. V.; Gadioli, E.; Garzelli, M. V.; Mairani, A.; Ottolenghi, A.; Pepe, A.; Pinsky, L. S.; Sala, P. R.; Steyn, G. F.

    2007-02-01

    Light ion reactions are of importance in many trans-disciplinary fields, particularly in cancer therapy and space radiation protection. We show here the results of an analysis of the spectra of intermediate mass fragments produced in the C+Al interaction at 13 MeV/n, both in direct and inverse kinematics, which supplies a very reasonable reproduction of a great number of data providing useful information on the leading reaction mechanisms.

  10. Intra- and intermolecular vibrational energy transfer in tungsten carbonyl complexes W(CO)5(X) (X=CO, CS, CH3CN, and CD3CN).

    Science.gov (United States)

    Banno, Motohiro; Iwata, Koichi; Hamaguchi, Hiro-o

    2007-05-28

    Vibrational energy relaxation of degenerate CO stretches of four tungsten carbonyl complexes, W(CO)6, W(CO)5(CS), W(CO)5(CH3CN), and W(CO)5(CD3CN), is observed in nine alkane solutions by subpicosecond time-resolved infrared (IR) pump-probe spectroscopy. Between 0 and 10 ps after the vibrational excitation, the bleaching signal of the ground-state IR absorption band shows anisotropy. Decay of the anisotropic component corresponds either to the rotational diffusion of the molecule or to the intramolecular vibrational energy transfer among the degenerate CO stretch modes. The time constant of the anisotropy decay, tauaniso, shows distinct solvent dependence. By comparing the results for the T1u CO stretch of W(CO)6 and the A1 CO stretch of W(CO)5(CS), the time constant of the rotational diffusion, taur, and the time constant of the intramolecular energy transfer among the three degenerate vibrational modes, taue, are determined as 12 and 8 ps, respectively. The tauaniso value increases as the number of carbon atoms in the alkane solvent increases. After 10 ps, the recovery of the bleaching becomes isotropic. The isotropic decay represents the vibrational population relaxation, from v=1 to v=0. In heptane, the time constant for the isotropic decay, tau1, for W(CO)5(CS) and W(CO)6 was 140 ps. The tau1 for the two acetonitrile-substituted complexes, however, shows a smaller value of 80 ps. The vibrational energy relaxation of W(CO)5(CH3CN) and W(CO)5(CD3CN) is accelerated by the intramolecular energy redistribution from the CO ligand to the acetonitrile ligand. In the nine alkane solutions, the tau1 value of W(CO)6 ranges between 124 and 158 ps, showing the apparent V-shaped solvent dependence with its minimum in decane, while the tau1 value shows little solvent dependence for W(CO)5(CH3CN) and W(CO)5(CD3CN). PMID:17552772

  11. Hadronic Interactions at Cosmic Ray Energies

    OpenAIRE

    Ostapchenko, S.

    2006-01-01

    General physics of very high energy hadronic interactions is discussed. Special attention is payed to the contribution of semihard processes to the interaction dynamics and to the role of parton shadowing and parton density saturation. In particular, the implementation of non-linear interaction effects in the QGSJET-II model is discussed in detail. The predictions of the model are compared to selected accelerator data, including ones of the RHIC collider, and the relation to the calculated ex...

  12. Intermolecular Forces in Introductory Chemistry Studied by Gas Chromatography, Computer Models, and Viscometry

    Science.gov (United States)

    Wedvik, Jonathan C.; McManaman, Charity; Anderson, Janet S.; Carroll, Mary K.

    1998-07-01

    An experiment on intermolecular forces for first-term introductory college chemistry is presented. The experiment integrates traditional viscometry-based measurements with modern chromatographic analysis and use of computer-based molecular models. Students performing gas chromatographic (GC) analyses of mixtures of n-alkanes and samples that simulate crime scene evidence discover that liquid mixtures can be separated rapidly into their components based upon intermolecular forces. Each group of students is given a liquid sample that simulates one collected at an arson scene, and the group is required to determine the identity of the accelerant. Students also examine computer models to better visualize how molecular structure affects intermolecular forces: London forces, dipole-dipole interactions, and hydrogen bonding. The relative viscosities of organic liquids are also measured to relate physical properties to intermolecular forces.

  13. JACEE results on very high energy interactions

    International Nuclear Information System (INIS)

    Direct observations of cosmic ray interactions in emulsion chambers of the JACEE experiment at energies above 1 TeV/nucleon are presented. An analysis of two decay of short lived particles produced in cosmic ray interactions is described. The known decay modes of bottom and charged particles do not account satisfactorily for the observations. This could possibly indicate a new decay channel of a heavy particle. The JACEE results support the hypothesis of existence of a long-flying component in cosmic ray showers. An interaction event was observed which may be the first direct observation of (mini)anticentauro interaction. (author)

  14. Expectations for ultra-high energy interactions

    International Nuclear Information System (INIS)

    Strong interactions at ultra-high energies are discussed with emphasis on the hadrons produced in high energy collisions. Evidence is considered that quantum chromodynamics might be the right theory, and also some estimates are given of quantum chromodynamics asymptotic-freedom phenomena, the work under discussion being very preliminary. 6 references

  15. Dark energy interacting with two fluids

    International Nuclear Information System (INIS)

    A cosmological model of dark energy interacting with dark matter and another general component of the universe is investigated. We found general constraints on these models imposing an accelerated expansion. The same is also studied in the case for holographic dark energy

  16. Generalized Interacting Holographic Dark Energy Model

    CERN Document Server

    Rashid, Muneer Ahmad; Jamil, Mubasher

    2009-01-01

    In this manuscript, we present a generalization of the interacting holographic dark energy model using two equations of states for the dark energy: the modified variable Chaplygin gas and the viscous generalized Chaplygin gas. The dynamics of the model are expressed by the use of scalar fields and the scalar potentials.

  17. Dark energy interacting with two fluids

    Energy Technology Data Exchange (ETDEWEB)

    Cruz, Norman [Departamento de Fisica, Facultad de Ciencia, Universidad de Santiago, Casilla 307, Santiago (Chile)], E-mail: ncruz@lauca.usach.cl; Lepe, Samuel [Instituto de Fisica, Facultad de Ciencias Basicas y Matematicas, Universidad Catolica de Valparaiso, Avenida Brasil 2950, Valparaiso (Chile)], E-mail: slepe@ucv.cl; Pena, Francisco [Departamento de Ciencias Fisicas, Facultad de Ingenieria, Ciencias y Administracion, Universidad de La Frontera, Avda. Francisco Salazar 01145, Casilla 54-D Temuco (Chile)], E-mail: fcampos@ufro.cl

    2008-05-29

    A cosmological model of dark energy interacting with dark matter and another general component of the universe is investigated. We found general constraints on these models imposing an accelerated expansion. The same is also studied in the case for holographic dark energy.

  18. An unprecedented self-assembled porous framework constructed by intermolecular S···S contacts

    International Nuclear Information System (INIS)

    An unprecedented self-assembled porous framework is constructed with a multi-sulfur donor molecule with ferrocenyl group (FcVET). The solvent-specific framework maintained by intermolecular S···S contacts forms one-dimensional hexagonal channels (? ? 7.5 A) filled with the solvated molecules. A careful evacuation of the solvated FcVET crystals leaves solvent-free FcVET crystals in which the identical framework structure with the same intermolecular S···S contacts is maintained. In contrast to the polar hydrogen bond donor-acceptor pairs, thiol-containing moieties are not regarded as good hydrogen bond tectons due to their insufficient polarity. On the other hand, although it is not directional, the intermolecular S···S interaction can be used in forming functional molecular assemblies as exemplified in the sulfur-rich molecular complexes of 4,5-bis(ethylenedithio)tetrathiafulvalene (ET) and metal-bisdithiolene complexes. These intermolecular charge transfer complexes need close contacts in solid states to exhibit electrical conductivity or magnetic properties, and the S···S interactions provide favorable interactions among the molecular components. The significant strength of this intermolecular interaction originates from a complementary electrophile-nucleophile interaction, or can be explained by a polar flattening model

  19. Interacting Induced Dark Energy Model

    OpenAIRE

    Bahrehbakhsh, Amir F.

    2016-01-01

    Similar to the idea of the brane world scenarios, but based on the approach of the induced matter theory, for a non--vacuum five--dimensional version of general relativity, we propose a model in which the conventional matter sources considered as all kind of the matter (the baryonic and dark) and the induced terms emerging from the extra dimension supposed to be as dark energy. Then we investigate the FLRW type cosmological equations and illustrate that the model is capable to explain respect...

  20. Casimir energy of frequency dependent interactions

    Science.gov (United States)

    Graham, N.; Quandt, M.; Weigel, H.

    2014-10-01

    Vacuum polarization (or Casimir) energies can be straightforwardly computed from scattering data for static field configurations whose interactions with the fluctuating field are frequency independent. In effective theories, however, such interactions are typically frequency dependent. As a consequence, the relationship between scattering data and the Green's function is modified, which may or may not induce additional contributions to the vacuum polarization energy. We discuss several examples that naturally include frequency dependent interactions: (i) scalar electrodynamics with a static background potential, (ii) an effective theory that emerges from integrating out a heavy degree of freedom, and (iii) quantum electrodynamics coupled to a frequency dependent dielectric material. In the latter case, we argue that introducing dissipation as required by the Kramers-Kronig relations requires the consideration of the Casimir energy within a statistical mechanics formalism, while in the absence of dissipation, we can work entirely within field theory, using an alternative formulation of the energy density.

  1. Interacting holographic dark energy with logarithmic correction

    OpenAIRE

    Jamil, Mubasher(School of Natural Sciences (SNS), National University of Science and Technology (NUST), H-12, Islamabad, Pakistan); Farooq, M. Umar

    2010-01-01

    The holographic dark energy (HDE) is considered to be the most promising candidate of dark energy. Its definition is originally motivated from the entropy-area relation which depends on the theory of gravity under consideration. Recently a new definition of HDE is proposed with the help of quantum corrections to the entropy-area relation in the setup of loop quantum cosmology. Using this new definition, we investigate the model of interacting dark energy and derive its effective equation of s...

  2. Imperfect Fermi gas: Kinetic and interaction energies

    International Nuclear Information System (INIS)

    A uniform ground-state three-dimensional Fermi gas with short-range repulsive pairwise interaction is under consideration. Its kinetic and interaction energies are calculated up to the second order of the expansion in the gas parameter. Similar to recent results for an interacting Bose gas, the quantities in question are found to depend on the pairwise interaction through two characteristic lengths: the former, a, is the s-wave scattering length, and the latter, b, is related to a by b=a-m(?a/?m), where m stands for the fermion mass. To control the results, we proceed in two independent ways. The first involves the Hellmann-Feynman theorem applied to derive the kinetic and interaction energies from the total-energy expansion in the gas parameter first found by Huang and Yang. The second way operates with in-medium pair wave functions and allows one to calculate the quantities of interest ''from scratch.'' The results of the present investigation, taken together with those of the recent consideration of a dilute Bose gas, make it possible to conclude that the pairwise interaction in a quantum gas has an essential and nontrivial effect on the kinetic energy, which is not the case for a classical many-particle system

  3. High energy photon interactions at the LHC

    OpenAIRE

    2009-01-01

    Experimental prospects for studying high-energy photon-photon and photon-proton interactions at the CERN Large Hadron Collider (LHC) are discussed. Cross sections are calculated for many electroweak and beyond the Standard Model processes. Selection strategies based on photon interaction tagging techniques are studied. Assuming a typical LHC multipurpose detector, various signals and their irreducible backgrounds are presented after applying acceptance cuts. Prospects are discussed for the Hi...

  4. Finding a unifying motif of intermolecular cooperativity in protein associations

    CERN Document Server

    Accordino, Sebastián R; Appignanesi, Gustavo A; Fernández, Ariel

    2011-01-01

    At the molecular level, most biological processes entail protein associations which in turn rely on a small fraction of interfacial residues called hot spots. Here we show that hot spots share a unifying molecular attribute: they provide a third-body contribution to intermolecular cooperativity. Such motif, based on the wrapping of interfacial electrostatic interactions, is essential to maintain the integrity of the interface and can be exploited in rational drug design since such regions may serve as blueprints to engineer small molecules disruptive of protein-protein interfaces.

  5. Interacting holographic dark energy with logarithmic correction

    Energy Technology Data Exchange (ETDEWEB)

    Jamil, Mubasher; Farooq, M. Umar, E-mail: mjamil@camp.nust.edu.pk, E-mail: mufarooq@yahoo.com [Center for Advanced Mathematics and Physics, National University of Sciences and Technology, Rawalpindi, 46000 (Pakistan)

    2010-03-01

    The holographic dark energy (HDE) is considered to be the most promising candidate of dark energy. Its definition is motivated from the entropy-area relation which depends on the theory of gravity under consideration. Recently a new definition of HDE is proposed with the help of quantum corrections to the entropy-area relation in the setup of loop quantum cosmology. Employing this new definition, we investigate the model of interacting dark energy and derive its effective equation of state. Finally we establish a correspondence between generalized Chaplygin gas and entropy-corrected holographic dark energy.

  6. Interacting holographic dark energy with logarithmic correction

    International Nuclear Information System (INIS)

    The holographic dark energy (HDE) is considered to be the most promising candidate of dark energy. Its definition is motivated from the entropy-area relation which depends on the theory of gravity under consideration. Recently a new definition of HDE is proposed with the help of quantum corrections to the entropy-area relation in the setup of loop quantum cosmology. Employing this new definition, we investigate the model of interacting dark energy and derive its effective equation of state. Finally we establish a correspondence between generalized Chaplygin gas and entropy-corrected holographic dark energy

  7. Interacting holographic dark energy with entropy corrections

    CERN Document Server

    Jamil, Mubasher

    2010-01-01

    The holographic dark energy (HDE) is considered to be the most promising candidate of dark energy. Its definition is originally motivated from the entropy-area relation which depends on the theory of gravity under consideration. Recently a new definition of HDE is proposed with the help of quantum corrections to the entropy-area relation in the setup of loop quantum cosmology. Using this new definition, we investigate the model of interacting dark energy and derive its effective equation of state. Finally we establish a correspondence between generalized Chaplygin gas and entropy-corrected holographic dark energy.

  8. Gravity and Cosmology with Interacting Dark Energy

    OpenAIRE

    Silbergleit, A. S.

    2016-01-01

    Dark energy (DE) is not necessarily uniform when other sources of gravity are present: interaction with matter leads to its variation in space and time. We study cosmological implications of this fact by analyzing cosmological models in which DE density interacts with matter and thus changes with time. We model the DE--matter interaction by specifying the rate of change of the DE density as an arbitrary function of it and the density of matter, in a single--phase case. In the case of several ...

  9. Gravity and Cosmology with Interacting Dark Energy

    CERN Document Server

    Silbergleit, A S

    2016-01-01

    Dark energy (DE) is not necessarily uniform when other sources of gravity are present: interaction with matter leads to its variation in space and time. We study cosmological implications of this fact by analyzing cosmological models in which DE density interacts with matter and thus changes with time. We model the DE--matter interaction by specifying the rate of change of the DE density as an arbitrary function of it and the density of matter, in a single--phase case. In the case of several matter components interacting with dark energy we assume the rate of every interacting phase density to be an arbitrary function of this density and the DE density. We describe some properties of cosmological solutions valid for a general law of DE--matter interaction, and discuss physical admissibility of the interaction laws. We study numerous families of exact solutions, both singular, non-singular, and mixed. Some of them exhibit interesting properties, such as, for instance, absence of the horizon problem due to the ...

  10. High energy electron beam interaction with tantalum

    International Nuclear Information System (INIS)

    Preliminary studies were performed on the interaction of high energy electron beams (HEEB) with commercially pure tantalum (Ta). Small Ta bars, nominally 2 x 0.5 x 0.1 cm were irradiated with HEEBs of energies ranging from 2.5 to 3 MeV, 1.5 kA, 1 to 2 micros pulse with a beam radius of 0.3 cm and larger. These HEEBs had a gaussian energy distribution. Following exposure in a vacuum, the bars were examined visually, with light optical microscopy and scanning electron microscopy which also provided energy dispersive x-rays (EDX) analysis. Weight and dimensional measurements were made on some of the bars. Based on the results of these examinations, a model for the interaction of HEEBs with Ta was developed and is presented

  11. Interacting holographic tachyon model of dark energy

    OpenAIRE

    Rozas-Fernández, Alberto; Brizuela, David; Cruz, N.

    2010-01-01

    We propose a holographic tachyon model of dark energy with interaction between the components of the dark sector. The correspondence between the tachyon field and the holographic dark energy densities allows the reconstruction of the potential and the dynamics of the tachyon scalar field in a flat FriedmannRobertsonWalker universe. We show that this model can describe the observed accelerated expansion of our universe with a parameter space given by the most recent observational results. © 20...

  12. Intuitive discussion of high energy photon interaction

    International Nuclear Information System (INIS)

    High energy photon interactions are discussed in terms of the hadronic structure of the photon. It is shown how certain qualitative features of the data may be understood from this point of view, and some indications of its limitations are given. (author)

  13. Strong interactions at very high energy

    International Nuclear Information System (INIS)

    Strong interactions in the very high energy field are studied. The main facts broached fall into three groups: the total cross section behaviour, the multiplicity of particles produced in the collisions and the characteristics of the collision core, i.e. the study of particles formed with a strong transverse momentum, that most concerned by the parton model

  14. Interacting vacuum energy in the dark sector

    International Nuclear Information System (INIS)

    We analyse three cosmological scenarios with interaction in the dark sector, which are particular cases of a general expression for the energy flux from vacuum to matter. In the first case the interaction leads to a transition from an unstable de Sitter phase to a radiation dominated universe, avoiding in this way the initial singularity. In the second case the interaction gives rise to a slow-roll power-law inflation. Finally, the third scenario is a concordance model for the late-time universe, with the vacuum term decaying into cold dark matter. We identify the physics behind these forms of interaction and show that they can be described as particular types of the modified Chaplygin gas

  15. Interacting vacuum energy in the dark sector

    Energy Technology Data Exchange (ETDEWEB)

    Chimento, L. P. [Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and IFIBA, CONICET, Cuidad Universitaria, Buenos Aires 1428 (Argentina); Carneiro, S. [Instituto de Física, Uníversídade Federal da Bahia, 40210-340, Salvador, BA (Brazil)

    2015-03-26

    We analyse three cosmological scenarios with interaction in the dark sector, which are particular cases of a general expression for the energy flux from vacuum to matter. In the first case the interaction leads to a transition from an unstable de Sitter phase to a radiation dominated universe, avoiding in this way the initial singularity. In the second case the interaction gives rise to a slow-roll power-law inflation. Finally, the third scenario is a concordance model for the late-time universe, with the vacuum term decaying into cold dark matter. We identify the physics behind these forms of interaction and show that they can be described as particular types of the modified Chaplygin gas.

  16. Nonlinear interaction involving zero energy waves

    International Nuclear Information System (INIS)

    Three-wave interactions involving one or two modes with non-definite sign of wave energy, treated by second order differential equations in time, are studied. The third mode is assumed to suffer heavy linear damping, and is treated by means of Tang's adiabatic approximation. The possibility of negative pump energy and positive decay mode energy is shown to lead to an explosive situation. Self-similar explosive solutions are derived, and it is shown that almost any solution asymptotically approaches, in some sense, these self-similar solutions. (Auth.)

  17. Thermodynamic curvature for attractive and repulsive intermolecular forces.

    Science.gov (United States)

    May, Helge-Otmar; Mausbach, Peter; Ruppeiner, George

    2013-09-01

    The thermodynamic curvature scalar R for the Lennard-Jones system is evaluated in phase space, including vapor, liquid, and solid state. We paid special attention to the investigation of R along vapor-liquid, liquid-solid, and vapor-solid equilibria. Because R is a measure of interaction strength, we traced out the line R=0 dividing the phase space into regions with effectively attractive (R0) interactions. Furthermore, we analyzed the dependence of R on the strength of attraction applying a perturbation ansatz proposed by Weeks-Chandler-Anderson. Our results show clearly a transition from R>0 (for poorly repulsive interaction) to R<0 when loading attraction in the intermolecular potential. PMID:24125229

  18. Interactive Joint Transfer of Energy and Information

    DEFF Research Database (Denmark)

    Popovski, Petar; Fouladgar, A. M.

    2013-01-01

    In some communication networks, such as passive RFID systems, the energy used to transfer information between a sender and a recipient can be reused for successive communication tasks. In fact, from known results in physics, any system that exchanges information via the transfer of given physical resources, such as radio waves, particles and qubits, can conceivably reuse, at least part, of the received resources. This paper aims at illustrating some of the new challenges that arise in the design of communication networks in which the signals exchanged by the nodes carry both information and energy. To this end, a baseline two-way communication system is considered in which two nodes communicate in an interactive fashion. In the system, a node can either send an “on” symbol (or “1”), which costs one unit of energy, or an “off” signal (or “0”), which does not require any energy expenditure. Upon reception of a “1” signal, the recipient node “harvests”, with some probability, the energy contained in the signal and stores it for future communication tasks. Inner and outer bounds on the achievable rates are derived. Numerical results demonstrate the effectiveness of the proposed strategies and illustrate some key design insights. Index Terms— Two-way channel, interactive communication, energy transfer, energy harvesting.

  19. Constraining dark energy interacting models with WMAP

    CERN Document Server

    Olivares, G; Pavón, D; Olivares, German; Atrio-Barandela, Fernando; Pavon, Diego

    2006-01-01

    We determine the range of parameter space of an interacting quintessence (IQ) model that best fits the luminosity distance of type Ia supernovae data and the recent WMAP measurements of Cosmic Microwave Background temperature anisotropies. Models in which quintessence decays into dark matter provide a clean explanation for the coincidence problem. We focus on cosmological models of zero spatial curvature. We show that if the dark energy (DE) decays into cold dark matter (CDM) at a rate that brings the ratio of matter to dark energy constant at late times, the supernovae data are not sufficient to constrain the interaction parameter. On the contrary, WMAP data constrain it to be smaller than $c^2 < 10^{-2}$ at the $3\\sigma$ level. Accurate measurements of the Hubble constant and the dark energy density, independent of the CMB data, would support/disprove this set of models.

  20. THz absorption spectrum of the CO2–H2O complex: Observation and assignment of intermolecular van der Waals vibrations

    DEFF Research Database (Denmark)

    Andersen, Jonas; Heimdal, J.; Wallin Mahler Andersen, Denise; Nelander, B.; Larsen, René Wugt

    2014-01-01

    have been assigned and provide crucial observables for benchmark theoretical descriptions of this systems’ flat intermolecular potential energy surface. A (semi)-empirical value for the zero-point energy of 273 ± 15 cm?1 from the class of intermolecular van der Waals vibrations is proposed and the...... combination with high-level quantum chemical calculations provides a value of 726 ± 15 cm?1 for the dissociation energy D0...

  1. Correlated ab initio investigations on the intermolecular and intramolecular potential energy surfaces in the ground electronic state of the O2(-)(X2?g)-HF(X1?+) complex.

    Science.gov (United States)

    Fawzy, Wafaa M; Elsayed, Mahmoud; Zhang, Yuchen

    2013-01-01

    This work reports the first highly correlated ab initio study of the intermolecular and intramolecular potential energy surfaces in the ground electronic state of the O(2)(-)(X(2)?(g))-HF(X(1)?(+)) complex. Accurate electronic structure calculations were performed using the coupled cluster method including single and double excitations with addition of the perturbative triples correction [CCSD(T)] with the Dunning's correlation consistent basis sets aug-cc-pVnZ, n = 2-5. Also, the explicitly correlated CCSD(T)-F12a level of theory was employed with the AVnZ basis as well as the Peterson and co-workers VnZ-F12 basis sets with n = 2 and 3. Results of all levels of calculations predicted two equivalent minimum energy structures of planar geometry and C(s) symmetry along the A" surface of the complex, whereas the A' surface is repulsive. Values of the geometrical parameters and the counterpoise corrected dissociation energies (Cp-D(e)) that were calculated using the CCSD(T)-F12a/VnZ-F12 level of theory are in excellent agreement with those obtained from the CCSD(T)/aug-cc-pV5Z calculations. The minimum energy structure is characterized by a very short hydrogen bond of length of 1.328 Å, with elongation of the HF bond distance in the complex by 0.133 Å, and D(e) value of 32.313 Kcal/mol. Mulliken atomic charges showed that 65% of the negative charge is localized on the hydrogen bonded end of the superoxide radical and the HF unit becomes considerably polarized in the complex. These results suggest that the hydrogen bond is an incipient ionic bond. Exploration of the potential energy surface confirmed the identified minimum and provided support for vibrationally induced intramolecular proton transfer within the complex. The T-shaped geometry that possesses C(2v) symmetry presents a saddle point on the top of the barrier to the in-plane bending of the hydrogen above and below the axis that connects centers of masses of the monomers. The height of this barrier is 7.257 Kcal/mol, which is higher in energy than the hydrogen bending frequency by 909.2 cm(-1). The calculated harmonic oscillator vibrational frequencies showed that the H-F stretch vibrational transition in the complex is redshifted by 2564 cm(-1) and gained significant intensity (by at least a factor of 30) with respect to the transition in the HF monomer. These results make the O(2)(-)-HF complex an excellent prototype for infrared spectroscopic investigations on open-shell complexes with vibrationally induced proton transfer. PMID:23298038

  2. Interactions between dark energy and dark matter

    Energy Technology Data Exchange (ETDEWEB)

    Baldi, Marco

    2009-03-20

    We have investigated interacting dark energy cosmologies both concerning their impact on the background evolution of the Universe and their effects on cosmological structure growth. For the former aspect, we have developed a cosmological model featuring a matter species consisting of particles with a mass that increases with time. In such model the appearance of a Growing Matter component, which is negligible in early cosmology, dramatically slows down the evolution of the dark energy scalar field at a redshift around six, and triggers the onset of the accelerated expansion of the Universe, therefore addressing the Coincidence Problem. We propose to identify this Growing Matter component with cosmic neutrinos, in which case the present dark energy density can be related to the measured average mass of neutrinos. For the latter aspect, we have implemented the new physical features of interacting dark energy models into the cosmological N-body code GADGET-2, and we present the results of a series of high-resolution simulations for a simple realization of dark energy interaction. As a consequence of the new physics, cold dark matter and baryon distributions evolve differently both in the linear and in the non-linear regime of structure formation. Already on large scales, a linear bias develops between these two components, which is further enhanced by the non-linear evolution. We also find, in contrast with previous work, that the density profiles of cold dark matter halos are less concentrated in coupled dark energy cosmologies compared with {lambda}{sub CDM}. Also, the baryon fraction in halos in the coupled models is significantly reduced below the universal baryon fraction. These features alleviate tensions between observations and the {lambda}{sub CDM} model on small scales. Our methodology is ideally suited to explore the predictions of coupled dark energy models in the fully non-linear regime, which can provide powerful constraints for the viable parameter space of such scenarios. (orig.)

  3. Interactions between dark energy and dark matter

    International Nuclear Information System (INIS)

    We have investigated interacting dark energy cosmologies both concerning their impact on the background evolution of the Universe and their effects on cosmological structure growth. For the former aspect, we have developed a cosmological model featuring a matter species consisting of particles with a mass that increases with time. In such model the appearance of a Growing Matter component, which is negligible in early cosmology, dramatically slows down the evolution of the dark energy scalar field at a redshift around six, and triggers the onset of the accelerated expansion of the Universe, therefore addressing the Coincidence Problem. We propose to identify this Growing Matter component with cosmic neutrinos, in which case the present dark energy density can be related to the measured average mass of neutrinos. For the latter aspect, we have implemented the new physical features of interacting dark energy models into the cosmological N-body code GADGET-2, and we present the results of a series of high-resolution simulations for a simple realization of dark energy interaction. As a consequence of the new physics, cold dark matter and baryon distributions evolve differently both in the linear and in the non-linear regime of structure formation. Already on large scales, a linear bias develops between these two components, which is further enhanced by the non-linear evolution. We also find, in contrast with previous work, that the density profiles of cold dark matter halos are less concentrated in coupled dark energy cosmologies compared with ?CDM. Also, the baryon fraction in halos in the coupled models is significantly reduced below the universal baryon fraction. These features alleviate tensions between observations and the ?CDM model on small scales. Our methodology is ideally suited to explore the predictions of coupled dark energy models in the fully non-linear regime, which can provide powerful constraints for the viable parameter space of such scenarios. (orig.)

  4. Energy security and climate policy. Assessing interactions

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2007-03-28

    World energy demand is surging. Oil, coal and natural gas still meet most global energy needs, creating serious implications for the environment. One result is that CO2 emissions, the principal cause of global warming, are rising. This new study underlines the close link between efforts to ensure energy security and those to mitigate climate change. Decisions on one side affect the other. To optimise the efficiency of their energy policy, OECD countries must consider energy security and climate change mitigation priorities jointly. The book presents a framework to assess interactions between energy security and climate change policies, combining qualitative and quantitative analyses. The quantitative analysis is based on the development of energy security indicators, tracking the evolution of policy concerns linked to energy resource concentration. The 'indicators' are applied to a reference scenario and CO2 policy cases for five case-study countries: The Czech Republic, France, Italy, the Netherlands, and the United Kingdom. Simultaneously resolving energy security and environmental concerns is a key challenge for policy makers today. This study helps chart the course.

  5. Spatial assignment of symmetry adapted perturbation theory interaction energy components: The atomic SAPT partition

    International Nuclear Information System (INIS)

    We develop a physically-motivated assignment of symmetry adapted perturbation theory for intermolecular interactions (SAPT) into atom-pairwise contributions (the A-SAPT partition). The basic precept of A-SAPT is that the many-body interaction energy components are computed normally under the formalism of SAPT, following which a spatially-localized two-body quasiparticle interaction is extracted from the many-body interaction terms. For electrostatics and induction source terms, the relevant quasiparticles are atoms, which are obtained in this work through the iterative stockholder analysis (ISA) procedure. For the exchange, induction response, and dispersion terms, the relevant quasiparticles are local occupied orbitals, which are obtained in this work through the Pipek-Mezey procedure. The local orbital atomic charges obtained from ISA additionally allow the terms involving local orbitals to be assigned in an atom-pairwise manner. Further summation over the atoms of one or the other monomer allows for a chemically intuitive visualization of the contribution of each atom and interaction component to the overall noncovalent interaction strength. Herein, we present the intuitive development and mathematical form for A-SAPT applied in the SAPT0 approximation (the A-SAPT0 partition). We also provide an efficient series of algorithms for the computation of the A-SAPT0 partition with essentially the same computational cost as the corresponding SAPT0 decomposition. We probe the sensitivity of the A-SAPT0 partition to the ISA grid and convergence parameter, orbital localization metric, and induction coupling treatment, and recommend a set of practical choices which closes the definition of the A-SAPT0 partition. We demonstrate the utility and computational tractability of the A-SAPT0 partition in the context of side-on cation-? interactions and the intercalation of DNA by proflavine. A-SAPT0 clearly shows the key processes in these complicated noncovalent interactions, in systems with up to 220 atoms and 2845 basis functions

  6. Spatial assignment of symmetry adapted perturbation theory interaction energy components: The atomic SAPT partition

    Science.gov (United States)

    Parrish, Robert M.; Sherrill, C. David

    2014-07-01

    We develop a physically-motivated assignment of symmetry adapted perturbation theory for intermolecular interactions (SAPT) into atom-pairwise contributions (the A-SAPT partition). The basic precept of A-SAPT is that the many-body interaction energy components are computed normally under the formalism of SAPT, following which a spatially-localized two-body quasiparticle interaction is extracted from the many-body interaction terms. For electrostatics and induction source terms, the relevant quasiparticles are atoms, which are obtained in this work through the iterative stockholder analysis (ISA) procedure. For the exchange, induction response, and dispersion terms, the relevant quasiparticles are local occupied orbitals, which are obtained in this work through the Pipek-Mezey procedure. The local orbital atomic charges obtained from ISA additionally allow the terms involving local orbitals to be assigned in an atom-pairwise manner. Further summation over the atoms of one or the other monomer allows for a chemically intuitive visualization of the contribution of each atom and interaction component to the overall noncovalent interaction strength. Herein, we present the intuitive development and mathematical form for A-SAPT applied in the SAPT0 approximation (the A-SAPT0 partition). We also provide an efficient series of algorithms for the computation of the A-SAPT0 partition with essentially the same computational cost as the corresponding SAPT0 decomposition. We probe the sensitivity of the A-SAPT0 partition to the ISA grid and convergence parameter, orbital localization metric, and induction coupling treatment, and recommend a set of practical choices which closes the definition of the A-SAPT0 partition. We demonstrate the utility and computational tractability of the A-SAPT0 partition in the context of side-on cation-? interactions and the intercalation of DNA by proflavine. A-SAPT0 clearly shows the key processes in these complicated noncovalent interactions, in systems with up to 220 atoms and 2845 basis functions.

  7. Low Energy Pion-Hyperon Interaction

    OpenAIRE

    Junior, Celso de Camargo Barros; Hama, Yogiro

    2000-01-01

    We study the low energy pion-hyperon interaction considering effective non-linear chiral invariant Lagrangians including pions, rho mesons, hyperons and corresponding resonances. Then we calculate the S- and P-wave phase-shifts, total cross sections, angular distributions and polarizations for the momentum in the center-of-mass frame up to k=400 MeV. With these results we discuss the CP violation in the csi-> pi-lambda and omega-> pi-csi weak decays.

  8. Four-body long-range interactions between ultracold weakly-bound diatomic molecules

    CERN Document Server

    Lepers, Maxence; Luc-Koenig, Eliane; Dulieu, Olivier

    2015-01-01

    Using the multipolar expansion of electrostatic and magnetostatic potential energies, we characterize the long-range interactions between two weakly-bound diatomic molecules, taking as an example the paramagnetic Er$_2$ Feshbach molecules which were produced recently. Since inside each molecule, individual atoms conserve their identity, the intermolecular potential energy can be expanded as the sum of pairwise atomic potential energies. In the case of Er$_2$ Feshbach molecules, we show that the interaction between atomic magnetic dipoles gives rise to the usual $R^{-3}$ term of the multipolar expansion, with $R$ the intermolecular distance, but also to additional terms scaling as $R^{-5}$, $R^{-7}$, and so on. Those terms are due to the interaction between effective molecular multipole moments, and are strongly anisotropic with respect to the orientation of the molecules. Similarly the atomic pairwise van der Waals interaction results in $R^{-6}$, $R^{-8}$, ... terms in the intermolecular potential energy. By...

  9. Redshift drift exploration for interacting dark energy

    Science.gov (United States)

    Geng, Jia-Jia; Li, Yun-He; Zhang, Jing-Fei; Zhang, Xin

    2015-08-01

    By detecting redshift drift in the spectra of the Lyman- forest of distant quasars, the Sandage-Loeb (SL) test directly measures the expansion of the universe, covering the "redshift desert" of . Thus this method is definitely an important supplement to the other geometric measurements and will play a crucial role in cosmological constraints. In this paper, we quantify the ability of the SL test signal by a CODEX-like spectrograph for constraining interacting dark energy. Four typical interacting dark energy models are considered: (i) , (ii) , (iii) , and (iv) . The results show that for all the considered interacting dark energy models, relative to the current joint SN BAO CMB observations, the constraints on and would be improved by about 60 and 30-40 %, while the constraints on w and would be slightly improved, with a 30-year observation of the SL test. We also explore the impact of the SL test on future joint geometric observations. In this analysis, we take the model with as an example, and we simulate future SN and BAO data based on the space-based project WFIRST. We find that with the future geometric constraints, the redshift drift observations would help break the geometric degeneracies in a meaningful way, thus the measurement precisions of , , w, and could be substantially improved using future probes.

  10. Redshift drift exploration for interacting dark energy

    CERN Document Server

    Geng, Jia-Jia; Zhang, Jing-Fei; Zhang, Xin

    2015-01-01

    By detecting redshift drift in the spectra of Lyman-$\\alpha$ forest of distant quasars, Sandage-Loeb (SL) test directly measures the expansion of the universe, covering the "redshift desert" of $2 \\lesssim z \\lesssim5$. Thus this method is definitely an important supplement to the other geometric measurements and will play a crucial role in cosmological constraints. In this paper, we quantify the ability of SL test signal by a CODEX-like spectrograph for constraining interacting dark energy. Four typical interacting dark energy models are considered: (\\romannumeral1) $Q=\\gamma H\\rho_c$, (\\romannumeral2) $Q=\\gamma H\\rho_{de}$, (\\romannumeral3) $Q=\\gamma H_0\\rho_c$, and (\\romannumeral4) $Q=\\gamma H_0\\rho_{de}$. The results show that for all the considered interacting dark energy models, relative to the current joint SN+BAO+CMB+$H_0$ observations, the constraints on $\\Omega_m$ and $H_0$ would be improved by about 60\\% and 30--40\\%, while the constraints on $w$ and $\\gamma$ would be slightly improved, with a 30-y...

  11. Ground state analytical ab initio intermolecular potential for the Cl{sub 2}-water system

    Energy Technology Data Exchange (ETDEWEB)

    Hormain, Laureline; Monnerville, Maurice, E-mail: maurice.monnerville@univ-lille1.fr; Toubin, Céline; Duflot, Denis; Pouilly, Brigitte; Briquez, Stéphane [Laboratoire de Physique des Lasers Atomes et Molécules, Unité Mixte de Recherche (UMR) 8523, Université Lille I, Bât. P5, 59655 Villeneuve d’Ascq Cedex (France); Bernal-Uruchurtu, Margarita I.; Hernández-Lamoneda, Ramón [Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Morelos, Cuernavaca 62209, México (Mexico)

    2015-04-14

    The chlorine/water interface is of crucial importance in the context of atmospheric chemistry. Modeling the structure and dynamics at this interface requires an accurate description of the interaction potential energy surfaces. We propose here an analytical intermolecular potential that reproduces the interaction between the Cl{sub 2} molecule and a water molecule. Our functional form is fitted to a set of high level ab initio data using the coupled-cluster single double (triple)/aug-cc-p-VTZ level of electronic structure theory for the Cl{sub 2} ? H{sub 2}O complex. The potential fitted to reproduce the three minima structures of 1:1 complex is validated by the comparison of ab initio results of Cl{sub 2} interacting with an increasing number of water molecules. Finally, the model potential is used to study the physisorption of Cl{sub 2} on a perfectly ordered hexagonal ice slab. The calculated adsorption energy, in the range 0.27 eV, shows a good agreement with previous experimental results.

  12. Ground state analytical ab initio intermolecular potential for the Cl2-water system

    Science.gov (United States)

    Hormain, Laureline; Monnerville, Maurice; Toubin, Céline; Duflot, Denis; Pouilly, Brigitte; Briquez, Stéphane; Bernal-Uruchurtu, Margarita I.; Hernández-Lamoneda, Ramón

    2015-04-01

    The chlorine/water interface is of crucial importance in the context of atmospheric chemistry. Modeling the structure and dynamics at this interface requires an accurate description of the interaction potential energy surfaces. We propose here an analytical intermolecular potential that reproduces the interaction between the Cl2 molecule and a water molecule. Our functional form is fitted to a set of high level ab initio data using the coupled-cluster single double (triple)/aug-cc-p-VTZ level of electronic structure theory for the Cl2 - H2O complex. The potential fitted to reproduce the three minima structures of 1:1 complex is validated by the comparison of ab initio results of Cl2 interacting with an increasing number of water molecules. Finally, the model potential is used to study the physisorption of Cl2 on a perfectly ordered hexagonal ice slab. The calculated adsorption energy, in the range 0.27 eV, shows a good agreement with previous experimental results.

  13. Ground state analytical ab initio intermolecular potential for the Cl2-water system

    International Nuclear Information System (INIS)

    The chlorine/water interface is of crucial importance in the context of atmospheric chemistry. Modeling the structure and dynamics at this interface requires an accurate description of the interaction potential energy surfaces. We propose here an analytical intermolecular potential that reproduces the interaction between the Cl2 molecule and a water molecule. Our functional form is fitted to a set of high level ab initio data using the coupled-cluster single double (triple)/aug-cc-p-VTZ level of electronic structure theory for the Cl2 ? H2O complex. The potential fitted to reproduce the three minima structures of 1:1 complex is validated by the comparison of ab initio results of Cl2 interacting with an increasing number of water molecules. Finally, the model potential is used to study the physisorption of Cl2 on a perfectly ordered hexagonal ice slab. The calculated adsorption energy, in the range 0.27 eV, shows a good agreement with previous experimental results

  14. Monomer spectroscopic analysis and dimer interaction energies on N-(4-methoxybenzoyl)-2-methylbenzenesulfonamide by experimental and theoretical approaches

    Science.gov (United States)

    Karakaya, Mustafa; Sert, Yusuf; Sreenivasa, Swamy; Suchetan, Parameshwar Adimoole; Ç?rak, Ça?r?

    2015-05-01

    In this study, theoretical harmonic vibrational frequencies and geometric parameters of N-(4-methoxybenzoyl)-2-methylbenzenesulfonamide have been investigated by Hartree-Fock (HF), density functional theory (B3LYP hybrid functional) methods with 6-311++G (d,p) basis set, for the first time. Experimental FT-IR (400-4000 cm-1) and Laser-Raman spectra (100-4000 cm-1) of title compound in solid phase have been recorded. Interaction energies, N-H⋯O hydrogen bonds, C-H⋯O and aromatic ?⋯? stacking interactions in dimer structures of the title compound have been evaluated by the calculation methods. The dimer calculations have aimed to present the efficacy and performance of M06-2X hybrid functional on the intermolecular interactions and more strongly bound systems for the corrected and interaction energy by the counterpoise correction procedure. The interaction energies by M06-2X approach give more stable results than HF and B3LYP, extremely. The more strongly bonds, especially, on N-H⋯O hydrogen bonds and ?⋯? interaction for the both dimer structure have also supported that the M06-2X functional of density functional is more effective.

  15. Energy fluctuations shape free energy of nonspecific biomolecular interactions

    OpenAIRE

    Elkin, Michael; Andre, Ingemar; Lukatsky, David B.

    2011-01-01

    Understanding design principles of biomolecular recognition is a key question of molecular biology. Yet the enormous complexity and diversity of biological molecules hamper the efforts to gain a predictive ability for the free energy of protein-protein, protein-DNA, and protein-RNA binding. Here, using a variant of the Derrida model, we predict that for a large class of biomolecular interactions, it is possible to accurately estimate the relative free energy of binding based...

  16. Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions

    Science.gov (United States)

    Elkin, Michael; Andre, Ingemar; Lukatsky, David B.

    2012-01-01

    Understanding design principles of biomolecular recognition is a key question of molecular biology. Yet the enormous complexity and diversity of biological molecules hamper the efforts to gain a predictive ability for the free energy of protein-protein, protein-DNA, and protein-RNA binding. Here, using a variant of the Derrida model, we predict that for a large class of biomolecular interactions, it is possible to accurately estimate the relative free energy of binding based on the fluctuation properties of their energy spectra, even if a finite number of the energy levels is known. We show that the free energy of the system possessing a wider binding energy spectrum is almost surely lower compared with the system possessing a narrower energy spectrum. Our predictions imply that low-affinity binding scores, usually wasted in protein-protein and protein-DNA docking algorithms, can be efficiently utilized to compute the free energy. Using the results of Rosetta docking simulations of protein-protein interactions from Andre et al. (Proc. Natl. Acad. Sci. USA 105:16148, 2008), we demonstrate the power of our predictions.

  17. Calculation of intermolecular potentials for H2−H2 and H2−O2 dimers ab initio and prediction of second virial coefficients

    International Nuclear Information System (INIS)

    Highlights: • We construct the angular orientations of dimers H2−H2 and H2−O2. • We calculate the ab initio intermolecular interaction energies for all built orientations. • Extrapolating the interaction energies to the complete basis set limit aug-cc-pV23Z. • We develop two 5-site ab initio intermolecular potentials of dimers H2−H2, H2−O2. • Calculating the virial coefficients of dimer H2−H2 and H2−O2. - Abstract: The intermolecular interaction potentials of the dimers H2−H2 and H2−O2 were calculated from quantum mechanics, using coupled-cluster theory CCSD(T) and correlation-consistent basis sets aug-cc-pVmZ (m = 2, 3); the results were extrapolated to the basis set limit aug-cc-pV23Z. The interaction energies were corrected for the basis set superposition error with the counterpoise scheme. For comparison also Møller–Plesset perturbation theory (at levels 2–4) with the basis sets aug-cc-pVTZ were considered, but the results proved inferior. The quantum mechanical results were used to construct analytical pair potential functions. From these functions the second virial coefficients of hydrogen and the cross virial coefficients of the hydrogen–oxygen system were obtained by integration; in both cases corrections for quantum effects were included. The results agree well with experimental data, if available, or with empirical correlations

  18. Isotopic effects on non-linearity, molecular radius and intermolecular free length

    Indian Academy of Sciences (India)

    Ranjan Dey; Arvind K Singh; N K Soni; B S Bisht; J D Pandey

    2006-08-01

    Computation of non-linearity parameter $(B/A)$, molecular radius $(r_{m})$ and intermolecular free length $(L_{f})$ for H2O, C6H6, C6H12, CH3OH, C2H5OH and their deuterium-substituted compounds have been carried out at four different temperatures, viz., 293.15, 303.15, 313.15 and 323.15 K. The aim of the investigation is an attempt to study the isotopic effects on the non-linearity parameter and the physicochemical properties of the liquids, which in turn has been used to study their effect on the intermolecular interactions produced thereof.

  19. Detection of complex formation and determination of intermolecular geometry through electrical anharmonic coupling of molecular vibrations using electron-vibration-vibration two-dimensional infrared spectroscopy.

    Science.gov (United States)

    Guo, Rui; Fournier, Frederic; Donaldson, Paul M; Gardner, Elizabeth M; Gould, Ian R; Klug, David R

    2009-10-14

    Electrical interactions between molecular vibrations can be non-linear and thereby produce intermolecular coupling even in the absence of a chemical bond. We use this fact to detect the formation of an intermolecular complex using electron-vibration-vibration two-dimensional infrared spectroscopy (EVV 2DIR) and also to determine the distance and angle between the two molecular species. PMID:19774270

  20. Lipid intermolecular hydrogen bonding: influence on structural organization and membrane function.

    Science.gov (United States)

    Boggs, J M

    1987-10-01

    The great variety of different lipids in membranes, with modifications to the hydrocarbon chains, polar groups and backbone structure suggests that many of these lipids may have unique roles in membrane structure and function. Acidic groups on lipids are clearly important, since they allow interaction with basic groups on proteins and with divalent cations. Another important property of certain lipids is their ability to interact intermolecularly with other lipids via hydrogen bonds. This interaction occurs through acidic and basic moieties in the polar head groups of phospholipids, and the amide moiety and hydroxyl groups on the acyl chain, sphingosine base and sugar groups of sphingo- and glycolipids. The putative ability of different classes of lipids to interact by intermolecular hydrogen bonding, the molecular groups which may participate and the effect of these interactions on some of their physical properties are summarized in Table IX. It is frequently questioned whether intermolecular hydrogen bonding could occur between lipids in the presence of water. Correlations of their properties with their molecular structures, however, suggest that it can. Participation in intermolecular hydrogen bonding increases the lipid phase transition temperature by approx. 8-16 Cdeg relative to the electrostatically shielded state and by 20-30 Cdeg relative to the repulsively charged state, while having variable effects on the enthalpy. It increases the packing density in monolayers, possibly also in the liquid-crystalline phase in bilayers, and decreases the lipid hydration. These effects can probably be accounted for by transient, fluctuating hydrogen bonds involving only a small percentage of the lipid at any one time. Thus, rotational and lateral diffusion of the lipids may take place but at a slower rate, and the lateral expansion is limited. Intermolecular hydrogen bonding between lipids in bilayers may be significantly stabilized, despite the presence of water, by the fact that the lipids are already intermolecularly associated as a result of the hydrophobic effect and the Van der Waals' interactions between their chains. The tendency of certain lipids to self-associate, their asymmetric distribution in SUVs, their preferential association with cholesterol in non-cocrystallizing mixtures, their temperature-induced transitions to the hexagonal phase and their inhibitory effect on penetration of hydrophobic residues of proteins partway into the bilayer can all be explained by their participation in intermolecular hydrogen bonding interactions.(ABSTRACT TRUNCATED AT 400 WORDS) PMID:3307919

  1. Dark matter interacts with variable vacuum energy

    CERN Document Server

    G, Iván E Sánchez

    2014-01-01

    We investigate a spatially flat Friedmann-Robertson-Walker (FRW) scenario with two interacting components, dark matter and variable vacuum energy (VVE) densities, plus two decoupled components, one is a baryon term while the other behaves as a radiation component. We consider a linear interaction in the derivative dark component density. We apply the $\\chi^2$ method to the observational Hubble data for constraining the cosmological parameters and analyze the amount of dark energy in the radiation era for the model. It turns out that our model fulfills the severe bound of $\\Omega_{x}(z\\simeq 1100)<0.009$ at $2\\sigma$ level, so is consistent with the recent analysis that includes cosmic microwave background anisotropy measurements from Planck survey, the future constraints achievable by Euclid and CMBPol experiments, reported for the behavior of the dark energy at early times, and fulfills the stringent bound $\\Omega_{x}(z\\simeq 10^{10})<0.04$ at $2\\sigma$ level in the big-bang nucleosynthesis epoch. We a...

  2. Redshift drift exploration for interacting dark energy

    Energy Technology Data Exchange (ETDEWEB)

    Geng, Jia-Jia; Li, Yun-He; Zhang, Jing-Fei [Northeastern University, Department of Physics, College of Sciences, Shenyang (China); Zhang, Xin [Northeastern University, Department of Physics, College of Sciences, Shenyang (China); Peking University, Center for High Energy Physics, Beijing (China)

    2015-08-15

    By detecting redshift drift in the spectra of the Lyman-? forest of distant quasars, the Sandage-Loeb (SL) test directly measures the expansion of the universe, covering the ''redshift desert'' of 2 interacting dark energy. Four typical interacting dark energy models are considered: (i) Q = ?H?{sub c}, (ii) Q = ?H?{sub de}, (iii) Q = ?H{sub 0}?{sub c}, and (iv) Q = ?H{sub 0}?{sub de}. The results show that for all the considered interacting dark energy models, relative to the current joint SN + BAO + CMB + H{sub 0} observations, the constraints on ?{sub m} and H{sub 0} would be improved by about 60 and 30-40 %, while the constraints on w and ? would be slightly improved, with a 30-year observation of the SL test. We also explore the impact of the SL test on future joint geometric observations. In this analysis, we take the model with Q = ?H?{sub c} as an example, and we simulate future SN and BAO data based on the space-based project WFIRST. We find that with the future geometric constraints, the redshift drift observations would help break the geometric degeneracies in a meaningful way, thus the measurement precisions of ?{sub m}, H{sub 0}, w, and ? could be substantially improved using future probes. (orig.)

  3. Redshift drift exploration for interacting dark energy

    International Nuclear Information System (INIS)

    By detecting redshift drift in the spectra of the Lyman-α forest of distant quasars, the Sandage-Loeb (SL) test directly measures the expansion of the universe, covering the ''redshift desert'' of 2 interacting dark energy. Four typical interacting dark energy models are considered: (i) Q = γHρc, (ii) Q = γHρde, (iii) Q = γH0ρc, and (iv) Q = γH0ρde. The results show that for all the considered interacting dark energy models, relative to the current joint SN + BAO + CMB + H0 observations, the constraints on Ωm and H0 would be improved by about 60 and 30-40 %, while the constraints on w and γ would be slightly improved, with a 30-year observation of the SL test. We also explore the impact of the SL test on future joint geometric observations. In this analysis, we take the model with Q = γHρc as an example, and we simulate future SN and BAO data based on the space-based project WFIRST. We find that with the future geometric constraints, the redshift drift observations would help break the geometric degeneracies in a meaningful way, thus the measurement precisions of Ωm, H0, w, and γ could be substantially improved using future probes. (orig.)

  4. Weak interactions at high energies. [Lectures, review

    Energy Technology Data Exchange (ETDEWEB)

    Ellis, J.

    1978-08-01

    Review lectures are presented on the phenomenological implications of the modern spontaneously broken gauge theories of the weak and electromagnetic interactions, and some observations are made about which high energy experiments probe what aspects of gauge theories. Basic quantum chromodynamics phenomenology is covered including momentum dependent effective quark distributions, the transverse momentum cutoff, search for gluons as sources of hadron jets, the status and prospects for the spectroscopy of fundamental fermions and how fermions may be used to probe aspects of the weak and electromagnetic gauge theory, studies of intermediate vector bosons, and miscellaneous possibilities suggested by gauge theories from the Higgs bosons to speculations about proton decay. 187 references. (JFP)

  5. Correlations in high-energy interactions

    International Nuclear Information System (INIS)

    The short-range correlations in rapidity whose existence has been firmly established in high-energy interactions are used to explain chaotic multiplicity behavior in proton-nucleon collisions at 800 GeV. In order to determine the values of higher-order moments from the second-order moment, we have used the pure birth approximation which is in agreement with the ''linked pair'' approximation of Carruthers. The calculated values of the normalized factorial moments for a given bin size show a good agreement with our data

  6. A simple and reliable approach to docking protein-protein complexes from very sparse NOE-derived intermolecular distance restraints

    International Nuclear Information System (INIS)

    A simple and reliable approach for docking protein-protein complexes from very sparse NOE-derived intermolecular distance restraints (as few as three from a single point) in combination with a novel representation for an attractive potential between mapped interaction surfaces is described. Unambiguous assignments of very sparse intermolecular NOEs are obtained using a reverse labeling strategy in which one the components is fully deuterated with the exception of selective protonation of the ?-methyl groups of isoleucine, while the other component is uniformly 13C-labeled. This labeling strategy can be readily extended to selective protonation of Ala, Leu, Val or Met. The attractive potential is described by a 'reduced' radius of gyration potential applied specifically to a subset of interfacial residues (those with an accessible surface area ? 50% in the free proteins) that have been delineated by chemical shift perturbation. Docking is achieved by rigid body minimization on the basis of a target function comprising the sparse NOE distance restraints, a van der Waals repulsion potential and the 'reduced' radius of gyration potential. The method is demonstrated for two protein-protein complexes (EIN-HPr and IIAGlc-HPr) from the bacterial phosphotransferase system. In both cases, starting from 100 different random orientations of the X-ray structures of the free proteins, 100% convergence is achieved to a single cluster (with near identical atomic positions) with an overall backbone accuracy of ?2 A. The approach described is not limited to NMR, since interfaces can also be mapped by alanine scanning mutagenesis, and sparse intermolecular distance restraints can be derived from double cycle mutagenesis, cross-linking combined with mass spectrometry, or fluorescence energy transfer

  7. Strongly Interacting Matter at High Energy Density

    Energy Technology Data Exchange (ETDEWEB)

    McLerran,L.

    2008-09-07

    This lecture concerns the properties of strongly interacting matter (which is described by Quantum Chromodynamics) at very high energy density. I review the properties of matter at high temperature, discussing the deconfinement phase transition. At high baryon density and low temperature, large N{sub c} arguments are developed which suggest that high baryonic density matter is a third form of matter, Quarkyonic Matter, that is distinct from confined hadronic matter and deconfined matter. I finally discuss the Color Glass Condensate which controls the high energy limit of QCD, and forms the low x part of a hadron wavefunction. The Glasma is introduced as matter formed by the Color Glass Condensate which eventually thermalizes into a Quark Gluon Plasma.

  8. A new intermolecular mechanism to selectively drive photoinduced damages

    CERN Document Server

    Gokhberg, Kirill; Kuleff, Alexander I; Cederbaum, Lorenz S

    2014-01-01

    Low-energy electrons (LEEs) are known to be effective in causing strand breaks in DNA. Recent experiments show that an important direct source of LEEs is the intermolecular Coulombic decay (ICD) process. Here we propose a new cascade mechanism initiated by core excitation and terminated by ICD and demonstrate its properties. Explicit calculations show that the energies of the emitted ICD-electrons can be controlled by selecting the initial atomic excitation. The properties of the cascade may have interesting applications in the fields of electron spectroscopy and radiation damage. Initiating such a cascade by resonant X-ray absorption from a high-Z element embedded in a cancerous cell nucleus, ICD will deliver genotoxic particles \\textit{locally} at the absorption site, increasing in that way the controllability of the induced damage.

  9. Determination of a silane intermolecular force field potential model from an ab initio calculation

    International Nuclear Information System (INIS)

    Intermolecular interaction potentials of the silane dimer in 12 orientations have been calculated by using the Hartree-Fock (HF) self-consistent theory and the second-order Moeller-Plesset (MP2) perturbation theory. We employed basis sets from Pople's medium-size basis sets [up to 6-311++G(3df, 3pd)] and Dunning's correlation consistent basis sets (up to the triply augmented correlation-consistent polarized valence quadruple-zeta basis set). We found that the minimum energy orientations were the G and H conformers. We have suggested that the Si-H attractions, the central silicon atom size, and electronegativity play essential roles in weakly binding of a silane dimer. The calculated MP2 potential data were employed to parametrize a five-site force field for molecular simulations. The Si-Si, Si-H, and H-H interaction parameters in a pairwise-additive, site-site potential model for silane molecules were regressed from the ab initio energies.

  10. Calculation of the absolute thermodynamic properties of association of host-guest systems from the intermolecular potential of mean force

    Science.gov (United States)

    Ghoufi, Aziz; Malfreyt, Patrice

    2006-12-01

    The authors report calculations of the intermolecular potential of mean force (PMF) in the case of the host-guest interaction. The host-guest system is defined by a water soluble calixarene and a cation. With an organic cation such as the tetramethylammonium cation, the calixarene forms an insertion complex, whereas with the Lanthane cation, the supramolecular assembly is an outer-sphere complex. The authors apply a modified free energy perturbation method and the force constraint technique to establish the PMF profiles as a function of the separation distance between the host and guest. They use the PMF profile for the calculation of the absolute thermodynamic properties of association that they compare to the experimental values previously determined. They finish by giving some structural features of the insertion and outer-sphere complexes at the Gibbs free energy minimum.

  11. An assay for intermolecular exchange of alpha crystallin

    Science.gov (United States)

    Gopalakrishnan, S.; Takemoto, L.; Spooner, B. S. (Principal Investigator)

    1992-01-01

    An affinity column of alpha crystallin linked to cyanogen bromide-activated Sepharose was developed to study the exchange of alpha subunits. Alpha crystallin bound to the Sepharose-alpha complex was dissociated with 8 mol/l urea, followed by quantitation using high-performance reverse-phase liquid chromatography. The time course of binding at 37 degrees C showed a hyperbolic binding pattern reaching equilibrium between 6-18 hr. Under these conditions, binding of beta and gamma crystallins to the same matrix was less than 10% of the alpha values, as was binding of alpha to glycine-coupled Sepharose. This assay was used to demonstrate changes in the subunit exchange of alpha crystallins present in high molecular weight versus lower molecular weight aggregates of the human lens. These results show that this binding procedure was a specific reproducible assay that might be used to study intermolecular interactions of the alpha crystallins.

  12. Nano-spectroscopic imaging of intermolecular structure, coupling and dynamics

    CERN Document Server

    Pollard, Benjamin; Hinrichs, Karsten; Raschke, Markus B

    2013-01-01

    Molecular self-assembly, the function of biomembranes, and the performance of organic solar cells rely on molecular interactions on the nanoscale. The understanding and design of such intrinsic or engineered heterogeneous functional soft matter has long been impeded by a lack of spectroscopic tools with sufficient nanometer spatial resolution, attomolar sensitivity, and intermolecular spectroscopic specificity. We implement vibrational scattering-scanning near-field optical microscopy ($s$-SNOM) in a multi-spectral modality with unprecedented spectral precision to investigate the structure-function relationship in nano-phase separated block-copolymers. We use a vibrational resonance as a sensitive reporter of the local chemical environment and resolve, with few nanometer spatial resolution and 0.2 cm$^{-1}$ spectral precision, spectral Stark shifts and line broadening correlated with molecular-scale morphologies. By creating images of solvatochromic vibrational shifts we discriminate local variations in elect...

  13. Investigation of the influence of solute-solvent interactions on the vibrational energy relaxation dynamics of large molecules in liquids.

    Science.gov (United States)

    Pigliucci, Anatolio; Duvanel, Guillaume; Daku, Latévi Max Lawson; Vauthey, Eric

    2007-07-19

    The influence of solute-solvent interactions on the vibrational energy relaxation dynamics of perylene and substituted perylenes in the first singlet excited-state upon excitation with moderate (vibrational wavepacket, were found to take place on a very similar time scale. No significant relationship between the strength of nonspecific solute-solvent interactions and the vibrational energy relaxation dynamics of the solutes could be evidenced. On the other hand, in alcohols the spectral narrowing is faster with a solute having H-bonding sites, indicating that this specific interaction tends to favor vibrational energy relaxation. No relationship between the dynamics of spectral narrowing and macroscopic solvent properties, such as the thermal diffusivity, could be found. On the other hand, a correlation between this narrowing dynamics and the number of low-frequency modes of the solvent molecules was evidenced. All these observations cannot be discussed with a model where vibrational energy relaxation occurs via two consecutive and dynamically well-separated steps, namely ultrafast intramolecular vibrational redistribution followed by slower vibrational cooling. On the contrary, the results indicate that both intra- and intermolecular vibrational energy redistribution processes are closely entangled and occur, at least partially, on similar timescales. PMID:17591756

  14. Stacked and H-Bonded Cytosine Dimers. Analysis of the Intermolecular Interaction Energies by Parallel Quantum Chemistry and Polarizable Molecular Mechanics.

    Czech Academy of Sciences Publication Activity Database

    Gresh, N.; Šponer, Judit E.; Devereux, M.; Gkionis, Konstantinos; de Courcy, B.; Piquemal, J.P.; Šponer, Ji?í

    2015-01-01

    Ro?. 119, ?. 30 (2015), s. 9477-9495. ISSN 1520-6106 R&D Projects: GA ?R(CZ) GAP208/11/1822 Institutional support: RVO:68081707 Keywords : DENSITY-FUNCTIONAL THEORY * DISTRIBUTED MULTIPOLE ANALYSIS * PERTURBATION-THEORY APPROACH Subject RIV: BO - Biophysics Impact factor: 3.302, year: 2014

  15. Low-energy electron interactions with biomolecules

    Science.gov (United States)

    Winstead, Carl

    2012-06-01

    Low-energy electron interactions with biomolecules have been the focus of sustained attention over the past decade. The demonstration by Sanche and coworkers that even subexcitation and subionization electrons can induce strand breaks in DNA opened a new frontier in understanding radiation damage to living systems. Many studies of DNA subunits and their analogues, both experimental and theoretical, have elucidated likely mechanisms by which slow electrons attach to and disrupt DNA, although the full picture is far from clear and some elements of it remain controversial. Increasing attention is also being given to low-energy electron collisions with amino acids in order to explore possible mechanisms of electron-mediated radiation damage to proteins. In a completely different context, electron-biomolecule collisions are fundamental to spark ignition and cumbustion of biofuels such as methanol and ethanol. Not to be overlooked, either, is the simplest but most ubiquitous biomolecule of all, water, whose low-energy electron cross sections remain surprisingly ill-characterized. This talk will survery recent ab initio computational studies using the Schwinger multichannel method of DNA- and protein-related molecules, alcohols, and water. Much of the work to be presented was carried out in collaboration with experimentalists who undertook complementary measurements, allowing for useful comparisons to be made. Although the primary focus will be on electronically elastic collisions relevant to dissociative attachment and electron transport, electron-impact excitation cross sections for water will be presented and discussed.

  16. K--4He interaction at low energies

    International Nuclear Information System (INIS)

    An isobar model of the anti KN-?? coupled-channels system is constructed for the total isospin I = 0 channel, which has an s-wave resonance, Y0*(1405) or ?(1405), about 30 MeV below the anti KN threshold. Low-energy K--4He elastic scattering is analyzed using the isobar-hole formalism, which can cope with the complexity of the anti KN-?? coupled-channels system and the singular behaviour of the scattering amplitude at the anti KN threshold. Various medium corrections to the ? propagation through the nucleus are properly taken into account and the ?-(residual) nucleus interaction is treated by introducing a phenomenological potential VY. The experimental scattering data can be well reproduced with an appropriate choice of the potential VY. A simple calculation using the isobar-hole model, however, fails to explain the kaonic helium atom data. (orig.)

  17. Exchange interaction energy in magnetic recording simulation

    Energy Technology Data Exchange (ETDEWEB)

    Igarashi, Masukazu, E-mail: masukazu.igarashi@xmail.plala.or.jp; Tonooka, Shun; Katada, Hiroyuki; Maeda, Maki; Hara, Miki [HGST, A Western Digital Company, 2880 Kohzu, Odawara, Kanagawa 256-8510 (Japan); Wood, Roger [HGST, A Western Digital Company, San Jose, California 95119 (United States)

    2015-05-07

    Based on a phenomenological theory, micromagnetic simulations and experiments are used to evaluate an improved function for the exchange interaction between magnetic particles in perpendicular recording media. Assuming diluted spin layers in the particle boundary and a gradual rather than abrupt rotation of magnetization between grain cores, the exchange energy is better described by an even power series of ?, rather than a cosine function. The conventional cosine function does not have a restoring torque near ??=?? and adjacent grains tend to align strictly antiparallel. In contrast, using a power series of ?, adjacent grains tend to align at a small angle away from ??=??. This gives rise to a small in-plane magnetization component and therefore a distinct peak in in-plane susceptibility is observed around H?=?0. From magnetization measurements of a real medium, a peak is observed around H?=?0, which matches with an assumption of 2 or 3 spin layers. In some situations, the exchange interaction between discretized cells for numerical calculation is better described by a power series rather than a cosine function.

  18. Cosmological constraints on a dark matter -- dark energy interaction

    OpenAIRE

    Hoffman, Mark B.

    2003-01-01

    It is generally assumed that the two dark components of the energy density of the universe, a smooth component called dark energy and a fluid of nonrelativistic weakly interacting particles called dark matter, are independent of each other and interact only through gravity. In this paper, we consider a class of models in which the dark matter and dark energy interact directly. The dark matter particle mass is proportional to the value of a scalar field, and the energy densit...

  19. Cosmological Evolution With Interaction Between Dark Energy And Dark Matter

    OpenAIRE

    Bolotin, Yu. L.; Kostenko, A.; Lemets, O. A.; Yerokhin, D. A.

    2013-01-01

    In this review we consider in detail different theoretical topics associated with interaction in the dark sector. We study linear and nonlinear interactions which depend on the dark matter and dark energy densities. We consider a number of different models (including the holographic dark energy and dark energy in a fractal universe) with interacting dark energy (DE) and dark matter (DM), have done a thorough analysis of these models. The main task of this review was not only...

  20. Calculations on Noncovalent Interactions and Databases of Benchmark Interaction Energies.

    Czech Academy of Sciences Publication Activity Database

    Hobza, Pavel

    2012-01-01

    Ro?. 45, ?. 4 (2012), s. 663-672. ISSN 0001-4842 R&D Projects: GA ?R GBP208/12/G016 Grant ostatní: European Social Fund(XE) CZ.1.05/2.1.00/03.0058 Institutional research plan: CEZ:AV0Z40550506 Keywords : non-covalent interactions * covalent interactions * quantum chemical approach Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 20.833, year: 2012

  1. Theoretical study of intermolecular energy transfer involving electronically excited molecules: He(/sup 1/S) + H/sub 2/(B /sup 1/. sigma. /sub u//sup +/). [Solution for coupled channel equations

    Energy Technology Data Exchange (ETDEWEB)

    Grimes, R.M.

    1986-11-01

    To further understanding of gas phase collision dynamics involving electronically-excited molecules, a fully quantum mechanical study of He + H/sub 2/(B /sup 1/..sigma../sub u//sup +/) was undertaken. Iterative natural orbital configuration interaction (CI) calculations were performed to obtain the interaction potential between He and H/sub 2/(B /sup 1/..sigma../sub u//sup +/). The potential energy surface (PES) is highly anisotropic and has a van der Waals well of about 0.03 eV for C/sub 2v/ approach. Avoided PES crossings occur with He + H/sub 2/(E,F /sup 1/..sigma../sub g//sup +/) and with He + H/sub 2/(X /sup 1/..sigma../sub g//sup +/) and cause a local maximum and a deep minimum in the He + H/sub 2/(B /sup 1/..sigma../sub u//sup +/) PES, respectively. The crossing with He + H/sub 2/(X /sup 1/..sigma../sub g//sup +/) provides a mechanism for fluorescence quenching. The computed CI energies were combined with previous multi-reference double excitation CI calculations and fit with analytic functions for convenience in scattering calculations. Accurate dipole polarizabilities and quadrupole moment of H/sub 2/(B /sup 1/..sigma../sub u//sup +/) were computed for use in the multipole expansion, which is the analytic form of the long-range PES. 129 refs., 28 figs., 35 tabs.

  2. Hydrogen bonding effects on coordinated sulfoxides and relative role of intra- and inter-molecular interactions determining the dmso orientation in [RR'NHOH][ fac-RuCl 3(dmso) 3] compounds: a crystallographic and molecular mechanics study

    Science.gov (United States)

    Geremia, S.; Calligaris, M.; Kukushkin, Y. N.; Zinchenko, A. V.; Kukushkin, V. Yu.

    2000-01-01

    Compounds with hydroxyl ammonium cations, [RR'NHOH][ fac-RuCl 3(dmso-S) 3], with R=R'=H ( 1), R=Me, R'=H ( 2) and R=R'=Et ( 3), have been prepared and structurally characterized by X-ray analyses. The three compounds display chain-like structures, formed by hydrogen bonding between the hydroxyl ammonium cations and the chlorine and oxygen atoms of the ruthenium anion. H-bonding involving the dmso oxygen atoms causes a lengthening of the S-O bonds. The comparison of the solid state structures with results of Molecular Mechanics calculations show that the arrangement of the fac-dmso-S ligands is not determined by H-bonding or packing effects, but from intramolecular steric and electrostatic interactions. These give rise to hindered rotation about the Ru-S bonds.

  3. Understanding the interaction between dark energy and dark matter

    International Nuclear Information System (INIS)

    We have studied the interaction between dark energy and dark matter from the thermodynamical consideration. Assuming the interaction as stable fluctuations around equilibrium and using the logarithmic correction to entropy caused by the fluctuation, we have derived the physical expression of the interaction. We have tested the viability of our scenario on the interaction by confronting with cosmological observations. (authors)

  4. IMPROPER HYDROGEN BONDS - A THEORETICAL STUDY ABOUT THE MOLECULAR STRUCTURE OF INTERMOLECULAR SYSTEMS FORMED BY H3C-H+Δ...X AND H3C+Δ...H-Y WITH X = CL- OR F- AND Y = CL OR F

    Directory of Open Access Journals (Sweden)

    B.G OLIVEIRA

    2009-01-01

    Full Text Available In this work is presented a theoretical study of the molecular properties of the H3C-H...X and H3C+δ...H-Y intermolecular systems with X = CL- or F- and Y = Cl or F. In the H3C-H...X complex, it is formed a traditional hydrogen bond between the CL- or F- anions and the hydrogen atom of the methyl. About the H3C+δ...H-Y complex, it was observed an improper hydrogen bond because the carbon atom of the methyl cation function as a proton acceptor. In this insight, the capacity of methane to interact with halogen anions (CL- or F- and molecular acids (HCl or HF was examined at the B3LYP/6-311++G(3df,3dp level of calculation. Moreover, the interaction strengths of the H3C-H...X and H3C+δ...H-Y complexes was evaluated by computing their intermolecular distances and binding energies. Finally, QTAIM calculations also were executed with the purpose to examine the intermolecular interactions through the quantification of their electronic densities (p as well as by the interpretation of the Laplacian operators (.

  5. Comparison of the local binding motifs in the imidazolium-based ionic liquids [EMIM][BF4] and [EMMIM][BF4] through cryogenic ion vibrational predissociation spectroscopy: Unraveling the roles of anharmonicity and intermolecular interactions

    International Nuclear Information System (INIS)

    We clarify the role of the critical imidazolium C(2)H position (the central C between N atoms in the heterocycle) in the assembly motif of the [EMIM][BF4] ionic liquid by analyzing the vibrational spectra of the bare EMIM+ ion as well as that of the cationic [EMIM]2[BF4]+ (EMIM+ = 1-ethyl-3-methylimidazolium, C6H11N2+) cluster. Vibrational spectra of the cold, mass-selected ions are obtained using cryogenic ion vibrational predissociation of weakly bound D2 molecules formed in a 10 K ion trap. The C(2)H behavior is isolated by following the evolution of key vibrational features when the C(2) hydrogen, the proposed binding location of the anion to the imidazolium ring, is replaced by either deuterium or a methyl group (i.e., in the EMMIM+ analogue). Strong features in the ring CH stretching region of the bare ion are traced to Fermi resonances with overtones of lower frequency modes. Upon incorporation into the EMIM+ ? ? ? BF4? ? ? ? EMIM+ ternary complex, the C(2)H oscillator strength is dramatically increased, accounting for the much more complicated patterns derived from the EMIM+ ring CH stretches in the light isotopomer, which are strongly suppressed in the deuterated analogue. Further changes in the spectra that occur when the C(2)H is replaced by a methyl group are consistent with BF4? attachment directly to the imidazolium ring in an arrangement that maximizes the electrostatic interaction between the molecular ions

  6. Structure, vibrational spectra and DFT characterization of the intra- and inter-molecular interactions in 2-hydroxy-5-methylpyridine-3-carboxylic acid--normal modes of the eight-membered HB ring.

    Science.gov (United States)

    Godlewska, P; Ja?czak, J; Kucharska, E; Hanuza, J; Lorenc, J; Michalski, J; Dymi?ska, L; W?gli?ski, Z

    2014-01-01

    Fourier transform IR and Raman spectra, XRD studies and DFT quantum chemical calculations have been used to characterize the structural and vibrational properties of 2-hydroxy-5-methylpyridine-3-carboxylic acid. In the unit-cell of this compound two molecules related by the inversion center interact via OH?N hydrogen bonds. The double hydrogen bridge system is spaced parallel to the (102) crystallographic plane forming eight-membered arrangement characteristic for pyridine derivatives. The six-membered ring is the second characteristic unit formed via the intramolecular OH?O hydrogen bond. The geometry optimization of the monomer and dimer have been performed applying the Gaussian03 program package. All calculations were performed in the B3LYP/6-31G(d,p) basis set using the XRD data as input parameters. The relation between the molecular and crystal structures has been discussed in terms of the hydrogen bonds formed in the unit cell. The vibrations of the dimer have been discussed in terms of the resonance inside the system built of five rings coupled via hydrogen bonds. PMID:24184924

  7. Comparison of the local binding motifs in the imidazolium-based ionic liquids [EMIM][BF{sub 4}] and [EMMIM][BF{sub 4}] through cryogenic ion vibrational predissociation spectroscopy: Unraveling the roles of anharmonicity and intermolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Fournier, Joseph A.; Wolke, Conrad T.; Johnson, Christopher J.; Johnson, Mark A., E-mail: mark.johnson@yale.edu, E-mail: mccoy@chemistry.ohio-state.edu [Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520 (United States); McCoy, Anne B., E-mail: mark.johnson@yale.edu, E-mail: mccoy@chemistry.ohio-state.edu [Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210 (United States)

    2015-02-14

    We clarify the role of the critical imidazolium C{sub (2)}H position (the central C between N atoms in the heterocycle) in the assembly motif of the [EMIM][BF{sub 4}] ionic liquid by analyzing the vibrational spectra of the bare EMIM{sup +} ion as well as that of the cationic [EMIM]{sub 2}[BF{sub 4}]{sup +} (EMIM{sup +} = 1-ethyl-3-methylimidazolium, C{sub 6}H{sub 11}N{sub 2}{sup +}) cluster. Vibrational spectra of the cold, mass-selected ions are obtained using cryogenic ion vibrational predissociation of weakly bound D{sub 2} molecules formed in a 10 K ion trap. The C{sub (2)}H behavior is isolated by following the evolution of key vibrational features when the C{sub (2)} hydrogen, the proposed binding location of the anion to the imidazolium ring, is replaced by either deuterium or a methyl group (i.e., in the EMMIM{sup +} analogue). Strong features in the ring CH stretching region of the bare ion are traced to Fermi resonances with overtones of lower frequency modes. Upon incorporation into the EMIM{sup +} ? ? ? BF{sub 4}{sup ?} ? ? ? EMIM{sup +} ternary complex, the C{sub (2)}H oscillator strength is dramatically increased, accounting for the much more complicated patterns derived from the EMIM{sup +} ring CH stretches in the light isotopomer, which are strongly suppressed in the deuterated analogue. Further changes in the spectra that occur when the C{sub (2)}H is replaced by a methyl group are consistent with BF{sub 4}{sup ?} attachment directly to the imidazolium ring in an arrangement that maximizes the electrostatic interaction between the molecular ions.

  8. Strong and Electromagnetic Interactions at SPS Energies

    CERN Document Server

    Ribicki, Andrzej

    2009-01-01

    Particle production in peripheral Pb+Pb collisions has been measured at a beam energy of 158 GeV per nucleon, corresponding to psNN 17.3 GeV. The measurements provide full double differential coverage in a wide range of longitudinal and transverse momenta, including the central (“mid-rapidity”) area and extending far into the projectile fragmentation region. The resulting analysis shows the heavy ion reaction as a mixture of different processes. In particular, surprising phenomena, like the presence of large and strongly varying structures in the shape of the double differential cross section d2s /dxFd pT , are induced by the final state electromagnetic interaction between produced particles and the charged spectator system. This effect is largest at low transverse momenta, where it results in a deep valley in the xF -dependence of the produced p+/p? ratio. The basic characteristics of the electromagnetic phenomenon described above agree with the results of a theoretical analysis, performed by means of ...

  9. The Energy-Momentum Tensor for Gravitational Interactions

    OpenAIRE

    Wyss, Walter

    1999-01-01

    Within the Lagrange formalism we show that the gauge invariant total energy-momentum tensor for gravitational interactions is zero. If the equations of motion are satisfied the energy tensor is conserved.

  10. Supramolecular methods for controlling intermolecular [2+2] photocycloaddition reactions of unsaturated compounds in solutions

    Science.gov (United States)

    Ushakov, E. N.; Gromov, S. P.

    2015-08-01

    This review deals with the methods of supramolecular chemistry used for controlling the efficiency and stereoselectivity of intermolecular [2+2] photocycloaddition of olefins and other unsaturated compounds in homogeneous solutions. The best-studied methods are self-assembly through cation-macrocycle interactions, complexation with molecular templates through hydrogen bonding, and confinement of the reactants in supramolecular containers. The possibilities of using anionic templates and combined supramolecular approaches are discussed. The bibliography includes 107 references.

  11. Dark Mass Creation During EWPT Via Dark Energy Interaction

    OpenAIRE

    Kisslinger, Leonard S.; Casper, Steven

    2013-01-01

    We add Dark Matter Dark Energy terms with a quintessence field interacting with a Dark Matter field to a MSSM EW Lagrangian previously used to calculate the magnetic field created during the EWPT. From the expectation value of the quintessence field we estimate the Dark Matter mass for parameters used in previous work on Dark Matter-Dark Energy interactions.

  12. Tuning Aryl?CH···O Intermolecular Interactions on Pt(111)

    DEFF Research Database (Denmark)

    Demers-Carpentier, Vincent; Laliberte, Marc-Andre?

    2011-01-01

    Scanning tunneling microscopy (STM) data are reported for the room-temperature adsorption of 2,2,2-trifluoroacetophenone (TFAP), 2,2,2-trifluorovinylbenzene (TFVB), octafluoroacetophenone (OFAP), and methyl benzoate (MB) on Pt(111). The objective of the study is to establish the role of aryl?CH···O bonding in forming self-assembled low-nuclearity structures at room temperature and to compare aryl?CH···O bonding by ester and ketone carbonyl functions. The STM images clearly evidence the formation of homochiral dimers and trimers of TFAP, and density functional theory (DFT) calculations reveal aryl?CH···O bonding as the driving force for dimer formation. In contrast to TFAP, chemisorbed TFVB and OFAP do not form such self-assembled structures as they lack carbonyl and aryl?CH groups, respectively. The self-assembly of MB on Pt(111) differs from that of TFAP, in that it can form structures stabilized by one, as distinct from two, aryl?CH···O bonds. The results are discussed with respect to the enantioselective hydrogenation of ?-ketoesters on cinchona modified Pt catalysts.

  13. Study of intermolecular interactions in hetero-organic thin films

    OpenAIRE

    Stadtmüller, Benjamin

    2013-01-01

    The interest in organic semiconductors is based on their great potential to serve as active materials in electronic devices such as organic light-emitting diodes or organic photovoltaic cells. The performance of these molecular assemblies does not only depend on the properties of the organic bulk materials but also on the interfaces formed by the contact between different materials. Therefore, the physical properties of interfaces between metal contacts and organic materials have been studied...

  14. Dark Energy and Its Interactions with Neutrinos

    OpenAIRE

    Zhang, Xinmin

    2005-01-01

    In this talk I will firstly review on the current constraints on the equation of state of the dark energy from observational data, then present a new scenario of dark energy dubbed {\\it Quintom}. The recent fits to the type Ia supernova data and the cosmic microwave background and so on in the literature find that the behavior of dark energy is to great extent in consistency with a cosmological constant, however the dynamical dark energy scenarios are generally not ruled out...

  15. Marine renewable energy technology and environmental interactions

    CERN Document Server

    2014-01-01

    It is now widely recognized that there is a need for long-term secure and suitable sustainable forms of energy. Renewable energy from the marine environment, in particular renewable energy from tidal currents, wave and wind, can help achieve a sustainable energy future. Our understanding of environmental impacts and suitable mitigation methods associated with extracting renewable energy from the marine environment is improving all the time, and it is essential that we be able to distinguish between natural and anthropocentric drivers and impacts. An overview of current understanding of the en

  16. Magnon energies and exchange interactions in terbium

    DEFF Research Database (Denmark)

    Houmann, Jens Christian Gylden

    1968-01-01

    The magnon density of states, and hence the magnetic contribution to the specific heat, and also the exchange interaction between ions in the same sublattice have been calculated for Tb at 90°K, using experimental results obtained by inelastic neutron scattering.......The magnon density of states, and hence the magnetic contribution to the specific heat, and also the exchange interaction between ions in the same sublattice have been calculated for Tb at 90°K, using experimental results obtained by inelastic neutron scattering....

  17. Molecular Alignment in Gaseous Expansions and Anisotropy of Intermolecular Forces

    Science.gov (United States)

    Aquilanti, Vincenzo

    2005-05-01

    Recently we experimentally demonstrated how a planar molecule tends to travel as a "frisbee" when a gaseous mixture with lighter carriers expands into a vacuum, the orientation being due to collisions. The molecule is benzene, the prototype of aromatic chemistry .The demonstration is via two complementary experiments: interrogating benzene by IR-laser light and controlling its orientation by selective scattering on a rare gas target. The results cast new light on the microscopic mechanism of collisional alignment (our earlier work regarded diatomic molecules, such as O2 and N2) and suggest a useful way to produce intense beams of aligned molecules, permitting studies of steric effects in gas-phase processes. This study has been extended to other simple hydrocarbons such as ethylene, acetylene and ethane, indicating that collisional alignment is effective also in these cases. Applications are in progress for molecule — surface scattering, opening expectations for nanocatalysis. Combining collisional studies of supersonic seeded beams of aligned molecules with results from scattering of rotationally hot molecular beams allows development of systematic characterization of intermolecular forces, particularly regarding molecular anisotropies and their roles is cluster formation: investigated systems include atmospheric gases, hydrocarbons, water. This extends our previous collisional studies on interactions of open-shell atoms, aligned by a magnetic field. The review presented here concludes with a sketch of accompanying theoretical developments, and by perspectives for collisional orientations and even chiral discrimination in linear flows or vortices.

  18. Early dark energy and its interaction with dark matter

    OpenAIRE

    Pu, Bo-Yu; Xu, Xiao-dong; Wang, Bin; Abdalla, Elcio

    2014-01-01

    We study a class of early dark energy models which has substantial amount of dark energy in the early epoch of the universe. We examine the impact of the early dark energy fluctuations on the growth of structure and the CMB power spectrum in the linear approximation. Furthermore we investigate the influence of the interaction between the early dark energy and the dark matter and its effect on the structure growth and CMB. We finally constrain the early dark energy model para...

  19. Buildings Interaction with Urban Energy Systems

    DEFF Research Database (Denmark)

    Heller, Alfred; Wyckmans, Annemie; Zucker, Gerhard; Petersen, Steffen; Haider, Catrin

    2015-01-01

    The goal towards a fossil free energy system is expressed in amongst others European and national targets, and puts pressure on the application of renewable energy sources combined with energy efficiency. Many cities are even more ambitious than their national targets and want to be among the first......, focusing on the impacts that buildings play in the overall energy system. Here buildings are not only consumers but rather prosumers that are able to produce renewable energy themselves. Buildings moreover offer potential storage capacities that can be utilized in demand shifting, which is necessary to...... to demonstrate that they can become not only smart fossil-free energy cities but sustainable in a wider sense, including water, waste, transportation and more. In the current paper, the research agenda to support such goals through smart city efforts is presented for a few European cases as examples...

  20. Instability in interacting dark energy and dark matter fluids

    International Nuclear Information System (INIS)

    We consider a model of dark energy interacting with dark matter. An interaction may be interesting for the solution of the coincidence problem. We model dark energy as a fluid with constant equation of state parameter w and study background and linear perturbations. While non-interacting models with constant w are well behaved, a simple interaction leads to an instability in the dark sector perturbations at early times. The instability is severe, non-adiabatic and independent of how weak the coupling is.

  1. Cosmological evolution with interaction between dark energy and dark matter

    Science.gov (United States)

    Bolotin, Yuri L.; Kostenko, Alexander; Lemets, Oleg A.; Yerokhin, Danylo A.

    2015-12-01

    In this review we consider in detail different theoretical topics associated with interaction in the dark sector. We study linear and nonlinear interactions which depend on the dark matter and dark energy densities. We consider a number of different models (including the holographic dark energy and dark energy in a fractal universe), with interacting dark energy and dark matter, have done a thorough analysis of these models. The main task of this review was not only to give an idea about the modern set of different models of dark energy, but to show how much can be diverse dynamics of the universe in these models. We find that the dynamics of a universe that contains interaction in the dark sector can differ significantly from the Standard Cosmological Model.

  2. Load Matching and Grid Interaction of Net Zero Energy Buildings

    DEFF Research Database (Denmark)

    Voss, Karsten; Sartori, Igor

    2010-01-01

    “Net Zero Energy Building” has become a prominent wording to describe the synergy of energy efficient building and renewable energy utilization to reach a balanced energy budget over a yearly cycle. Taking into account the energy exchange with a grid infrastructure overcomes the limitations of seasonal energy storage on-site. Even though the wording “Net Zero Energy Building” focuses on the annual energy balance, large differences may occur between solution sets in the amount of grid interaction needed to reach the goal. The paper reports on the analysis of example buildings concerning the load matching and grid interaction. Indices to describe both issues are proposed and foreseen as part of a harmonized definition framework. The work is part of subtask A of the IEA SHCP Task40/ECBCS Annex 52: “Towards Net Zero Energy Solar Buildings”.

  3. Load Matching and Grid Interaction of Net Zero Energy Buildings

    DEFF Research Database (Denmark)

    Voss, Karsten; Sartori, Igor; Napolitano, Assunta; Geier, Sonja; Gonzalves, Helder; Hall, Monika; Heiselberg, Per; Widén, Joakim; Candanedo, José A.; Musall, Eike; Karlsson, Björn; Torcellini, Paul

    2010-01-01

    “Net Zero Energy Building” has become a prominent wording to describe the synergy of energy efficient building and renewable energy utilization to reach a balanced energy budget over a yearly cycle. Taking into account the energy exchange with a grid infrastructure overcomes the limitations of...... seasonal energy storage on-site. Even though the wording “Net Zero Energy Building” focuses on the annual energy balance, large differences may occur between solution sets in the amount of grid interaction needed to reach the goal. The paper reports on the analysis of example buildings concerning the load...... matching and grid interaction. Indices to describe both issues are proposed and foreseen as part of a harmonized definition framework. The work is part of subtask A of the IEA SHCP Task40/ECBCS Annex 52: “Towards Net Zero Energy Solar Buildings”....

  4. Hadron-nucleus interactions at high energy

    International Nuclear Information System (INIS)

    Properties of energetic secondaries produced at large angles using 800 GeV incident protons are presented. H2, Be, C, Al, Cu and Pb targets were used for the study. The yields for producing such secondaries vary as A/sup ?/ where A is the atomic mass number of the target and ? attains values as large as 1.6. There is evidence that jet-like events have ? values approaching unity, indicating a hard scattering mechanism may be occurring. Events with large values of target-fragmentation energy have, on average, large values of energy in the central region and small values of forward-going energy. Energy flows and number of secondaries are independent of the target when events with similar amounts of energy in the central region are studied

  5. Hadron-nucleus interactions at high energy

    Energy Technology Data Exchange (ETDEWEB)

    Gomez, R.; Dauwe, L.; Haggerty, H.; Malamud, E.; Nikolic, M.; Lannutti, J.; Hagopian, S.; Pifer, B.; Abrams, R.; Ares, J.

    1986-05-01

    Properties of energetic secondaries produced at large angles using 800 GeV incident protons are presented. H/sub 2/, Be, C, Al, Cu and Pb targets were used for the study. The yields for producing such secondaries vary as A/sup ..cap alpha../ where A is the atomic mass number of the target and ..cap alpha.. attains values as large as 1.6. There is evidence that jet-like events have ..cap alpha.. values approaching unity, indicating a hard scattering mechanism may be occurring. Events with large values of target-fragmentation energy have, on average, large values of energy in the central region and small values of forward-going energy. Energy flows and number of secondaries are independent of the target when events with similar amounts of energy in the central region are studied.

  6. Low-energy hadronic interactions beyond the current algebra approach

    International Nuclear Information System (INIS)

    The new low-energy AP3-interaction, which is produced by convergent box-constituent-quark-loop diagrams, is obtained within chiral perturbation theory at the quark level (CHPT)q with linear realization of chiral U(3) x U(3) symmetry. Its contributions to processes of low-energy interactions of low-lying mesons are investigated. The new interaction goes beyond the framework of the low-energy current algebra approach and of the effective chiral Lagrangians with linear realization of chiral symmetry, constructed at the hadronic level. (author). 17 refs, 3 figs

  7. Electrostatic interaction energies of homogeneous cubic charge distributions

    CERN Document Server

    Essén, H

    2007-01-01

    The starting point is the problem of finding the interaction energy of two coinciding homogeneous cubic charge distributions. The brute force method of subdividing the cube into $N^3$ sub-cubes and doing the sums results in slow convergence because of the Coulomb singularity. Using symmetry and algebra the Coulomb singularities can be eliminated. This leads to an accurate numerical algorithm as well as an interesting exact result relating the desired interaction energy to three other interaction energies, namely those of cubes touching each other at a face, at an edge, and at a corner, respectively. As an application a simple model illustrating Wigner crystallization is presented.

  8. High energy e+e- interactions

    International Nuclear Information System (INIS)

    A review is given about the experimental studies of e+e- interactions. After a description of the PETRA and PEP storage rings the structure of leptons and the weak neutral current contributions to lepton pair production are discussed. Then experiments for the search for new particles, the jet formation in e+e- annihilation, and the quark and gluon fragmentation are described. (HSI)

  9. Effective dark energy equation of state in interacting dark energy models

    OpenAIRE

    Avelino, P. P.; da Silva, H. M. R.

    2012-01-01

    In models where dark matter and dark energy interact non-minimally, the total amount of matter in a fixed comoving volume may vary from the time of recombination to the present time due to energy transfer between the two components. This implies that, in interacting dark energy models, the fractional matter density estimated using the cosmic microwave background assuming no interaction between dark matter and dark energy will in general be shifted with respect to its true va...

  10. Pair interaction energy between deformable drops and bubbles

    Science.gov (United States)

    Danov, K. D.; Petsev, D. N.; Denkov, N. D.; Borwankar, R.

    1993-11-01

    The potential energy of interaction between two deformed particles, having the shape of spherical segments and separated by a planar film, is considered. An exact explicit expression for the van der Waals interaction energy between such deformed particles of arbitrary size and deformation is derived by using the microscopic approach of Hamaker [Physica 4, 1058 (1937)]. By means of Derjaguin's approximation [Kolloid Z. 69, 155 (1934)] explicit expressions for the electrostatic, steric, depletion, and other types of interaction are derived. The relative contributions of the interaction across the planar film and between the spherical surfaces surrounding the film, are analyzed for different cases. The surface deformation energy caused by an increase of the interfacial area during the particle deformation is also considered. The implication of the obtained formulas for treatment of the particle interactions in some particular systems like emulsions, microemulsions, and vesicles, as well as for the adhesion of such particles to a solid wall is briefly discussed.

  11. Explosives sensing by using electron-rich supramolecular polymers: role of intermolecular hydrogen bonding in significant enhancement of sensitivity.

    Science.gov (United States)

    Gole, Bappaditya; Song, Wentao; Lackinger, Markus; Mukherjee, Partha Sarathi

    2014-10-13

    We demonstrate here that supramolecular interactions enhance the sensitivity towards detection of electron-deficient nitro-aromatic compounds (NACs) over discrete analogues. NACs are the most commonly used explosive ingredients and are common constituents of many unexploded landmines used during World War II. In this study, we have synthesised a series of pyrene-based polycarboxylic acids along with their corresponding discrete esters. Due to the electron richness and the fluorescent behaviour of the pyrene moiety, all the compounds act as sensors for electron-deficient NACs through a fluorescence quenching mechanism. A Stern-Volmer quenching constant determination revealed that the carboxylic acids are more sensitive than the corresponding esters towards NACs in solution. The high sensitivity of the acids was attributed to supramolecular polymer formation through hydrogen bonding in the case of the acids, and the enhancement mechanism is based on an exciton energy migration upon excitation along the hydrogen-bond backbone. The presence of intermolecular hydrogen bonding in the acids in solution was established by solvent-dependent fluorescence studies and dynamic light scattering (DLS) experiments. In addition, the importance of intermolecular hydrogen bonds in solid-state sensing was further explored by scanning tunnelling microscopy (STM) experiments at the liquid-solid interface, in which structures of self-assembled monolayer of the acids and the corresponding esters were compared. The sensitivity tests revealed that these supramolecular sensors can even detect picric acid and trinitrotoluene in solution at levels as low as parts per trillion (ppt), which is much below the recommended permissible level of these constituents in drinking water. PMID:25187022

  12. Photons from Jet - Plasma Interaction in collisional energy loss scenario

    OpenAIRE

    Bhattacharya, Lusaka; Roy, Pradip K

    2008-01-01

    We calculate photons from jet plasma interaction in a collisional energy loss scenario. It is shown that the PHENIX photon data is well reproduced when photons from initial hard collisions are taken into account.

  13. Evolution of interacting viscous dark energy model in Einstein cosmology

    International Nuclear Information System (INIS)

    We investigate the evolution of the viscous dark energy (DE) interacting with the dark matter (DM) in the Einstein cosmology model. By using the linearizing theory of the dynamical system, we find that, in our model, there exists a stable late time scaling solution which corresponds to the accelerating universe. We also find the unstable solution under some appropriate parameters. In order to alleviate the coincidence problem, some authors considered the effect of quantum correction due to the conform anomaly and the interacting dark energy with the dark matter. However, if we take into account the bulk viscosity of the cosmic fluid, the coincidence problem will be softened just like the interacting dark energy cosmology model. That is to say, both the non-perfect fluid model and the interacting the dark energy cosmic model can alleviate or soften the singularity of the universe. (authors)

  14. Chirality of weakly bound complexes: The potential energy surfaces for the hydrogen-peroxide?noble-gas interactions

    Energy Technology Data Exchange (ETDEWEB)

    Roncaratti, L. F., E-mail: lz@fis.unb.br; Leal, L. A.; Silva, G. M. de [Instituto de Física, Universidade de Brasília, 70910 Brasília (Brazil); Pirani, F. [Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, 06123 Perugia (Italy); Aquilanti, V. [Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, 06123 Perugia (Italy); Instituto de Física, Universidade Federal da Bahia, 40210 Salvador (Brazil); Gargano, R. [Instituto de Física, Universidade de Brasília, 70910 Brasília (Brazil); Departments of Chemistry and Physics, University of Florida, Quantum Theory Project, Gainesville, Florida 32611 (United States)

    2014-10-07

    We consider the analytical representation of the potential energy surfaces of relevance for the intermolecular dynamics of weakly bound complexes of chiral molecules. In this paper we study the H{sub 2}O{sub 2}?Ng (Ng=He, Ne, Ar, Kr, and Xe) systems providing the radial and the angular dependence of the potential energy surface on the relative position of the Ng atom. We accomplish this by introducing an analytical representation which is able to fit the ab initio energies of these complexes in a wide range of geometries. Our analysis sheds light on the role that the enantiomeric forms and the symmetry of the H{sub 2}O{sub 2} molecule play on the resulting barriers and equilibrium geometries. The proposed theoretical framework is useful to study the dynamics of the H{sub 2}O{sub 2} molecule, or other systems involving O–O and S–S bonds, interacting by non-covalent forces with atoms or molecules and to understand how the relative orientation of the O–H bonds changes along collisional events that may lead to a hydrogen bond formation or even to selectivity in chemical reactions.

  15. On effect of strong interaction on binding energies of mesomolecules

    International Nuclear Information System (INIS)

    An effect of nuclear interaction on the binding energy of mesomolecular ions is considered. The nuclear dd potential has been reconstructed from phase shifts of the deuteron-deuteron scattering, so it has been possible to estimate reliably a contribution from the nuclear interaction to the binding energies for all five discrete levels of the dd? mesomolecule. The results obtained can be of interest in problem of the mesomolecular physics and, in particular, for mesonic catalysis of nuclear reactions

  16. Dynamical behavior of interacting dark energy in loop quantum cosmology

    OpenAIRE

    Xiao, Kui; Zhu, Jian-yang

    2010-01-01

    The dynamical behaviors of interacting dark energy in loop quantum cosmology are discussed in this paper. Based on defining three dimensionless variables, we simplify the equations of the fixed points. The fixed points for interacting dark energy can be determined by the Friedmann equation coupled with the dynamical equations {in Einstein cosmology}. But in loop quantum cosmology, besides the Friedmann equation, the conversation equation also give a constrain on the fixed points. The differen...

  17. The growth of structure in interacting dark energy models

    International Nuclear Information System (INIS)

    If dark energy interacts with dark matter, there is a change in the background evolution of the universe, since the dark matter density no longer evolves as a?3. In addition, the non-gravitational interaction affects the growth of structure. In principle, these changes allow us to detect and constrain an interaction in the dark sector. Here we investigate the growth factor and the weak lensing signal for a new class of interacting dark energy models. In these models, the interaction generalises the simple cases where one dark fluid decays into the other. In order to calculate the effect on structure formation, we perform a careful analysis of the perturbed interaction and its effect on peculiar velocities. Assuming a normalization to today's values of dark matter density and overdensity, the signal of the interaction is an enhancement (suppression) of both the growth factor and the lensing power, when the energy transfer in the background is from dark matter to dark energy (dark energy to dark matter)

  18. The effect of intermolecular hydrogen bonding on the fluorescence of a bimetallic platinum complex.

    Science.gov (United States)

    Zhao, Guang-Jiu; Northrop, Brian H; Han, Ke-Li; Stang, Peter J

    2010-09-01

    The bimetallic platinum complexes are known as unique building blocks and arewidely utilized in the coordination-driven self-assembly of functionalized supramolecular metallacycles. Hence, photophysical study of the bimetallic platinum complexes will be very helpful for the understanding on the optical properties and further applications of coordination-driven self-assembled supramolecular metallacycles. Herein, we report steady-state and time-resolved spectroscopic experiments as well as quantum chemistry calculations to investigate the significant intermolecular hydrogen bonding effects on the intramolecular charge transfer (ICT) fluorescence of a bimetallic platinum compound 4,4'-bis(trans-Pt(PEt(3))(2)OTf)benzophenone 3 in solution. We demonstrated that the fluorescent state of compound 3 can be assigned as a metal-to-ligand charge transfer (MLCT) state. Moreover, it was observed that the formation of intermolecular hydrogen bonds can effectively lengthen the fluorescence lifetime of 3 in alcoholic solvents compared with that in hexane solvent. At the same time, the electronically excited states of 3 in solution are definitely changed by intermolecular hydrogen bonding interactions. As a consequence, we propose a new fluorescence modulation mechanism by hydrogen bonding to explain different fluorescence emissions of 3 in hydrogen-bonding solvents and nonhydrogen-bonding solvents. PMID:20698713

  19. Effective theory of interacting dark energy

    Science.gov (United States)

    Gleyzes, Jérôme; Langlois, David; Mancarella, Michele; Vernizzi, Filippo

    2015-08-01

    We present a unifying treatment of dark energy and modified gravity that allows distinct conformal-disformal couplings of matter species to the gravitational sector. In this very general approach, we derive the conditions to avoid ghost and gradient instabilities. We compute the equations of motion for background quantities and linear perturbations. We illustrate our formalism with two simple scenarios, where either cold dark matter or a relativistic fluid is nonminimally coupled. This extends previous studies of coupled dark energy to a much broader spectrum of gravitational theories.

  20. Effective Theory of Interacting Dark Energy

    CERN Document Server

    Gleyzes, Jérôme; Mancarella, Michele; Vernizzi, Filippo

    2015-01-01

    We present a unifying treatment of dark energy and modified gravity that allows distinct conformal-disformal couplings of matter species to the gravitational sector. In this very general approach, we derive the conditions to avoid ghost and gradient instabilities. We compute the equations of motion for background quantities and linear perturbations. We illustrate our formalism with two simple scenarios, where either cold dark matter or a relativistic fluid is nonminimally coupled. This extends previous studies of coupled dark energy to a much broader spectrum of gravitational theories.

  1. Interactive Joint Transfer of Energy and Information

    DEFF Research Database (Denmark)

    Popovski, Petar; Fouladgar, A. M.; Simeone, Osvaldo

    2013-01-01

    In some communication networks, such as passive RFID systems, the energy used to transfer information between a sender and a recipient can be reused for successive communication tasks. In fact, from known results in physics, any system that exchanges information via the transfer of given physical...

  2. Binding energies of ? ? hypernuclei and the ? ? interaction

    International Nuclear Information System (INIS)

    The binding energies of the ? ? hypernuclei /sub ? ?/10Be and /sub ? ?/6He were calculated variationally with a 2? + 2? and with an ? + 2? model respectively. For /sub ? ?/?110Be the integrations were made with Monte Carlo techniques while for /sub ? ?/6He direct numerical methods were used. A wide range of phenomenological ? ? potentials based on meson-exchange models was considered

  3. Strong interactions studies with medium energy probes

    International Nuclear Information System (INIS)

    This report discusses work on: charmonium spectroscopy; proton form- factor in the time-like region; proton-antiproton forward scattering; QCD scaling laws; light quark spectroscopy; high resolutions electron scattering; quasi-free electron scattering; and low energy pion double charge exchange

  4. Vibronic spectra of perylene bisimide oligomers: effects of intermolecular charge-transfer excitation and conformational flexibility.

    Science.gov (United States)

    Gao, Fang; Zhao, Yi; Liang, WanZhen

    2011-03-31

    We have recently presented a theoretical study on the temperature-dependent absorption and photoluminescence spectroscopy of rubrene multichromophores by combining the time-dependent long-range-corrected density functional theory with the Frenkel exciton model (Gao; et al. J. Phys. Chem. A2009, 113, 12847). The spectra of rubrene multichromophores up to heptamers have been calculated and the effects of exciton-phonon coupling and temperature on the photophysical properties of both H- and J-aggregated oligomers were addressed. However, in that work the contribution of intermolecular charge-transfer excitons (CTEs) to vibronic spectra was not addressed. Here we take into account the effect of CTEs for the absorption and emission spectra of the aggregated perylene bisimide (PBI) oligomers in order to have a quantitative explanation to the experimental absorption and emission spectra of the PBI dyes. The role of intermolecular CTEs is discussed for different intermolecular orientations and distances. The simulations demonstrate that the contribution of CTEs becomes significant when the intermolecular distance is less than 4.5 Å for the ?-? stacked PBI aggregates, and the mixed exciton model is prerequisite to explain the experimentally observed red-shift of the absorption spectra in this case. The large Stokes shift of the emission spectra can be reproduced by our model, and it is induced by the asymmetric nature of the lowest excitonic state of the H-aggregated oligomers. The experimentally observed broad emission bands come from two species with different conformations. As for J-aggregated PBI oligomers, the interactions of FEs induce the red-shift and the increase of the relative intensity of 0-0 peak of the absorption spectra with more aggregated units. PMID:21384839

  5. Interacting dark sector with variable vacuum energy

    CERN Document Server

    Chimento, Luis P; García, Iván E Sánchez

    2013-01-01

    We examine a cosmological scenario where dark matter is coupled to a variable vacuum energy while baryons and photons are two decoupled components for a spatially flat Friedmann-Robertson-Walker spacetime. We apply the $\\chi^{2}$ method to the updated observational Hubble data for constraining the cosmological parameters and analyze the amount of dark energy in the radiation era. We show that our model fulfills the severe bound of $\\Omega_{x}(z\\simeq 1100)<0.009$ at the $2\\sigma$ level, so it is consistent with the recent analysis that includes cosmic microwave background anisotropy measurements from the Planck survey, the Atacama Cosmology Telescope, and the South Pole Telescope along with the future constraints achievable by the Euclid and CMBPol experiments, and fulfills the stringent bound $\\Omega_{x}(z\\simeq 10^{10})<0.04$ at the $2\\sigma$ level in the big-bang nucleosynthesis epoch.

  6. Simulating two-dimensional infrared-Raman and Raman spectroscopies for intermolecular and intramolecular modes of liquid water.

    Science.gov (United States)

    Ito, Hironobu; Tanimura, Yoshitaka

    2016-02-21

    Full classical molecular dynamics (MD) simulations of two-dimensional (2D) infrared-Raman and 2D Raman spectroscopies of liquid water were carried out to elucidate a mode-mode coupling mechanism using a polarizable water model for intermolecular and intramolecular vibrational spectroscopy (POLI2VS). This model is capable of describing both infrared and Raman spectra. Second-order response functions, which consist of one molecular polarizability and two molecular dipole moments for 2D IR-Raman and three molecular polarizabilities for 2D Raman spectroscopies, were calculated using an equilibrium-non-equilibrium hybrid MD approach. The obtained signals were analyzed using a multi-mode Brownian oscillator (BO) model with nonlinear system-bath interactions representing the intramolecular OH stretching, intramolecular HOH bending, hydrogen bonded (HB)-intermolecular librational motion and HB-intermolecular vibrational (translational) motion of liquid water. This model was applied through use of hierarchal Fokker-Planck equations. The qualitative features of the peak profiles in the 2D spectra obtained from the MD simulations are accurately reproduced with the BO model. This indicates that this model captures the essential features of the intermolecular and intramolecular motion. We elucidate the mechanisms governing the 2D signal profiles involving anharmonic mode-mode coupling, the nonlinearities of the polarizability and dipole moment, and the vibrational dephasing processes of liquid water even in the case that the 2D spectral peaks obtained from the MD simulation overlap or are unclear. The mode coupling peaks caused by electrical anharmonic coupling (EAHC) and mechanical anharmonic coupling (MAHC) are observed in all of the 2D spectra. We find that the strength of the MAHC between the OH-stretching and HB-intermolecular vibrational modes is comparable to that between the OH-stretching and HOH bending modes. Moreover, we find that this OH-stretching and HB-intermolecular vibrational coupling should be observed as off-diagonal cross peaks in the 2D spectra. PMID:26896979

  7. Protein-Protein Interaction Analysis by Docking

    OpenAIRE

    Stephan Ederer; Florian Fink; Wolfram Gronwald

    2009-01-01

    Based on a protein-protein docking approach we have developed a procedure to verify or falsify protein-protein interactions that were proposed by other methods such as yeast-2-hybrid assays. Our method currently utilizes intermolecular energies but can be expanded to incorporate additional terms such as amino acid based pair-potentials. We show some early results that demonstrate the general applicability of our approach.

  8. Calculations of Potential Energy Surfaces Using Monte Carlo Configuration Interaction

    CERN Document Server

    Coe, J P; Paterson, M J; 10.1063/1.4767052

    2012-01-01

    We apply the method of Monte Carlo configuration interaction (MCCI) to calculate ground-state potential energy curves for a range of small molecules and compare the results with full configuration interaction. We show that the MCCI potential energy curve can be calculated to relatively good accuracy, as quantified using the non-parallelity error, using only a very small fraction of the FCI space. In most cases the potential curve is of better accuracy than its constituent single-point energies. We finally test the MCCI program on systems with basis sets beyond full configuration interaction: a lattice of fifty hydrogen atoms and ethylene. The results for ethylene agree fairly well with other computational work while for the lattice of fifty hydrogens we find that the fraction of the full configuration interaction space we were able to consider appears to be too small as, although some qualitative features are reproduced, the potential curve is less accurate.

  9. High-energy interactions at the Pierre Auger Observatory

    CERN Document Server

    ,

    2015-01-01

    The interaction of Ultra High Energy Cosmic Rays (UHECRs) with the atoms of the atmosphere can occur at center-of-mass energies that surpass 100 TeV, while present human-made accelerators go up to 13 TeV. Therefore it provides a unique opportunity to explore hadronic interactions at the highest energies. However, the extraction of hadronic interaction properties from the Extensive Air Showers (EAS) characteristics, which are induced by the UHECR, is intrinsically related to the nature of the primary cosmic ray. As such, to break the degeneracy between hadronic interactions and primary mass composition, a consistent description of the shower observables must be achieved. Such detailed studies have been conducted in the last years at the Pierre Auger Observatory, the largest UHECRs detector in the world. It combines two complementary techniques to measure the EAS characteristics. In this talk, we will present the latest measurements on shower observables, both on the electromagnetic and muonic shower components...

  10. Hadronic interactions and cosmic rays at ultra high energies

    Directory of Open Access Journals (Sweden)

    Lipari Paolo

    2013-06-01

    Full Text Available Observations of ultra high energy cosmic rays allow in principle to obtain information about the properties of hadronic interactions in an energy range not accessible with particle accelerators. This task is however complicated by the fact that the composition of the primary CR is not known and must be estimated from the same data set. Solving the ambiguity between composition and hadronic interaction modeling is a central problem for UHECR observations. Recently the Pierre Auger collaboration has presented an estimate of the p–air interaction length at a laboratory energy E0 ? 1018.24?eV. The interaction length is inferred from the shape of the tail of the Xmax distribution of the observed showers, following a method pioneered by the Fly's Eye group. In this work we want to analyse critically this method, and discuss its potential for further studies.

  11. Dynamics of interacting phantom and quintessence dark energies

    CERN Document Server

    Farooq, M Umar; Debnath, Ujjal

    2011-01-01

    We present models, in which phantom energy interacts with two different types of dark energies including variable modified Chaplygin gas (VMCG) and new modified Chaplygin gas (NMCG). We then construct potentials for these cases. It has been shown that the potential of the phantom field decreases from a higher value with the evolution of the Universe.

  12. Ferrocene Orientation Determined Intramolecular Interactions Using Energy Decomposition Analysis

    Directory of Open Access Journals (Sweden)

    Feng Wang

    2015-11-01

    Full Text Available Two very different quantum mechanically based energy decomposition analyses (EDA schemes are employed to study the dominant energy differences between the eclipsed and staggered ferrocene conformers. One is the extended transition state (ETS based on the Amsterdam Density Functional (ADF package and the other is natural EDA (NEDA based in the General Atomic and Molecular Electronic Structure System (GAMESS package. It reveals that in addition to the model (theory and basis set, the fragmentation channels more significantly affect the interaction energy terms (ΔE between the conformers. It is discovered that such an interaction energy can be absorbed into the pre-partitioned fragment channels so that to affect the interaction energies in a particular conformer of Fc. To avoid this, the present study employs a complete fragment channel—the fragments of ferrocene are individual neutral atoms. It therefore discovers that the major difference between the ferrocene conformers is due to the quantum mechanical Pauli repulsive energy and orbital attractive energy, leading to the eclipsed ferrocene the energy preferred structure. The NEDA scheme further indicates that the sum of attractive (negative polarization (POL and charge transfer (CL energies prefers the eclipsed ferrocene. The repulsive (positive deformation (DEF energy, which is dominated by the cyclopentadienyle (Cp rings, prefers the staggered ferrocene. Again, the cancellation results in a small energy residue in favour of the eclipsed ferrocene, in agreement with the ETS scheme. Further Natural Bond Orbital (NBO analysis indicates that all NBO energies, total Lewis (no Fe and lone pair (LP deletion all prefer the eclipsed Fc conformer. The most significant energy preferring the eclipsed ferrocene without cancellation is the interactions between the donor lone pairs (LP of the Fe atom and the acceptor antibond (BD* NBOs of all C–C and C–H bonds in the ligand, LP(Fe-BD*(C–C & C–H, which strongly stabilizes the eclipsed (D5h conformation by −457.6 kcal·mol−1.

  13. Vibrational Spectra of ??-Type BEDT-TTF Salts: Relationship between Conducting Property, Time-Averaged Site Charge and Inter-Molecular Distance

    Directory of Open Access Journals (Sweden)

    Takashi Yamamoto

    2012-07-01

    Full Text Available The relationship between the conducting behavior and the degree of charge fluctuation in the ??-type BEDT-TTF salts is reviewed from the standpoints of vibrational spectroscopy and crystal structure. A group of ??-type ET salts demonstrates the best model compounds for achieving the above relationship because the two-dimensional structure is simple and great diversity in conducting behavior is realized under ambient pressure. After describing the requirement for the model compound, the methodology for analyzing the results of the vibrational spectra is presented. Vibrational spectroscopy provides the time-averaged molecular charge, the charge distribution in the two-dimensional layer, and the inter-molecular interactions, etc. The experimental results applied to 2/3-filled and 3/4-filled ??-type ET salts are reported. These experimental results suggest that the conducting property, the difference in the time-averaged molecular charges between the ionic and neutral-like sites, the alternation in the inter-molecular distances and the energy levels in the charge distributions are relevant to one another. The difference in the time-averaged molecular charges, ??, is a useful criterion for indicating conducting behavior. All superconductors presented in this review are characterized as small but finite ??.

  14. Meson-nuclear interactions at medium energies

    International Nuclear Information System (INIS)

    A brief review of selected directions in medium energy physics is given. Special attention is paid to the propagation of hadrons in the nuclear medium which results in a modification of the free properties of the probe hadron and the nucleus. Such modifications are germane to our understanding of both particles and nuclei. Examples are given involving pion and kaon scattering, absorption and production from nuclei. Some of what has been learned is summarized and some of the hopes for the future are outlined

  15. Meson-nuclear interactions at medium energies

    Energy Technology Data Exchange (ETDEWEB)

    Eisenstein, R A

    1981-01-01

    A brief review of selected directions in medium energy physics is given. Special attention is paid to the propagation of hadrons in the nuclear medium which results in a modification of the free properties of the probe hadron and the nucleus. Such modifications are germane to our understanding of both particles and nuclei. Examples are given involving pion and kaon scattering, absorption and production from nuclei. Some of what has been learned is summarized and some of the hopes for the future are outlined.

  16. Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interface.

    Science.gov (United States)

    Temiz, N Alpay; Camacho, Carlos J

    2009-07-01

    A major obstacle towards understanding the molecular basis of transcriptional regulation is the lack of a recognition code for protein-DNA interactions. Using high-quality crystal structures and binding data on the promiscuous family of C(2)H(2) zinc fingers (ZF), we decode 10 fundamental specific interactions responsible for protein-DNA recognition. The interactions include five hydrogen bond types, three atomic desolvation penalties, a favorable non-polar energy, and a novel water accessibility factor. We apply this code to three large datasets containing a total of 89 C(2)H(2) transcription factor (TF) mutants on the three ZFs of EGR. Guided by molecular dynamics simulations of individual ZFs, we map the interactions into homology models that embody all feasible intra- and intermolecular bonds, selecting for each sequence the structure with the lowest free energy. These interactions reproduce the change in affinity of 35 mutants of finger I (R(2) = 0.998), 23 mutants of finger II (R(2) = 0.96) and 31 finger III human domains (R(2) = 0.94). Our findings reveal recognition rules that depend on DNA sequence/structure, molecular water at the interface and induced fit of the C(2)H(2) TFs. Collectively, our method provides the first robust framework to decode the molecular basis of TFs binding to DNA. PMID:19429892

  17. INTERACTION ENERGIES IN NON WATSON-CRICK PAIRS: AN AB INITIO STUDY OF G·U AND U·U PAIRS

    Directory of Open Access Journals (Sweden)

    SANDRA T MADARIAGA

    2005-03-01

    Full Text Available Ab initio calculations at the MP2/6-31G** level have been carried out on the non-Watson-Crick nucleic acids pairs G·U and U·U to obtain the interaction energies and to see whether the derived values are comparable or not with the canonical G-C, A-T and A-U pairs. Optimized geometries of the pairs show that the structural parameters of the isolated bases differ very little on pairing. The guanine -NH2 group does not participate in the hydrogen bonding formation and possesses a pyramidal structure; its intrinsic nonplanarity plays an important role in the out-of-plane intermolecular interactions. Thus, the G·U pair projects three hydrogen bonding acceptor sites, namely, N7(G, O6(G and O4(U to the RNA major groove. The interaction energy (DHºint calculated for the G·U pair (-13.6 kcal/mol is comparable to that determined for A-T (-13.0 kcal/mol, but considerable smaller than the experimental value reported for G-C (-21.0 kcal/mol. The U·U pair follows the trend that pairing between pyrimidines bases should have lower interacting energies than purine-pyrimidine pairs

  18. Very low-energy neutrino interactions

    Energy Technology Data Exchange (ETDEWEB)

    Suzuki, Toshio [Department of Physics and Graduate School of Integrated Basic Sciences, College of Humanities and Sciences, Nihon University, Sakurajosui 3-25-40, Setagaya-ku, Tokyo 156-8550 (Japan); Department of Physics and Graduate School of Integrated Basic Sciences, College of Humanities and Sciences, National Astronomical Observatory of Japan, Mitaka, Tokyo 181-8588 (Japan)

    2015-05-15

    Neutrino-nucleus reaction cross sections are now evaluated rather accurately by shell-model (SM) or SM+RPA calculations based on recent advances in nuclear structure studies. Due to these achievements, reliable constraints on super-nova neutrino temperatures as well as neutrino oscillation parameters become possible. Supernova neutrino tempeatures are constrained from abundances of elements obtained by using new ?-nucleus reaction cross sections. A possibility of constructing supernova neutrino spectrum from beta-beam measurements is pointed out. Neutrino mass hierarchy and mixing angle ?{sub 13} can be determined from abundance ratio of {sup 7}Li/{sup 11}B, which is sensitive to the MSW matter oscillation effects in supernova explosions. Inverted mass hierarchy is shown to be statistically more favored based on a recent analysis of presolar grains. Effects of neutrino-neutrino interactions are also shown to play important roles in r-process nucleosynthesis. Importance and possibilities of direct measurements of ?-induced cross sections on {sup 40}Ar and {sup 208}Pb are discussed for future supernova neutrino detections. Recent calculations of the cross sections for ?-{sup 40}Ar are presented. The need for new theoretical evaluations of the cross sections for ?-{sup 208}Pb is pointed out. Challenges to experiments on coherent elastic scattering are presented.

  19. Very low-energy neutrino interactions

    International Nuclear Information System (INIS)

    Neutrino-nucleus reaction cross sections are now evaluated rather accurately by shell-model (SM) or SM+RPA calculations based on recent advances in nuclear structure studies. Due to these achievements, reliable constraints on super-nova neutrino temperatures as well as neutrino oscillation parameters become possible. Supernova neutrino tempeatures are constrained from abundances of elements obtained by using new ν-nucleus reaction cross sections. A possibility of constructing supernova neutrino spectrum from beta-beam measurements is pointed out. Neutrino mass hierarchy and mixing angle θ13 can be determined from abundance ratio of 7Li/11B, which is sensitive to the MSW matter oscillation effects in supernova explosions. Inverted mass hierarchy is shown to be statistically more favored based on a recent analysis of presolar grains. Effects of neutrino-neutrino interactions are also shown to play important roles in r-process nucleosynthesis. Importance and possibilities of direct measurements of ν-induced cross sections on 40Ar and 208Pb are discussed for future supernova neutrino detections. Recent calculations of the cross sections for ν-40Ar are presented. The need for new theoretical evaluations of the cross sections for ν-208Pb is pointed out. Challenges to experiments on coherent elastic scattering are presented

  20. Interacting new agegraphic viscous dark energy with varying $G$

    OpenAIRE

    Sheykhi, A.; Setare, M. R.

    2010-01-01

    We consider the new agegraphic model of dark energy with a varying gravitational constant, $G$, in a non-flat universe. We obtain the equation of state and the deceleration parameters for both interacting and noninteracting new agegraphic dark energy. We also present the equation of motion determining the evolution behavior of the dark energy density with a time variable gravitational constant. Finally, we generalize our study to the case of viscous new agegraphic dark energ...

  1. Breaking parameter degeneracy in interacting dark energy models from observations

    OpenAIRE

    Xu, Xiao-dong; He, Jian-Hua; Wang, Bin

    2011-01-01

    We study the interacting dark energy model with time varying dark energy equation of state. We examine the stability in the perturbation formalism and the degeneracy among the coupling between dark sectors, the time-dependent dark energy equation of state and dark matter abundance in the cosmic microwave background radiation. Further we discuss the possible ways to break such degeneracy by doing global fitting using the latest observational data and we get a tight constraint...

  2. Ligand binding affinity prediction by linear interaction energy methods.

    Science.gov (United States)

    Hansson, T; Marelius, J; Aqvist, J

    1998-01-01

    A recent method for estimating ligand binding affinities is extended. This method employs averages of interaction potential energy terms from molecular dynamics simulations or other thermal conformational sampling techniques. Incorporation of systematic deviations from electrostatic linear response, derived from free energy perturbation studies, into the absolute binding free energy expression significantly enhances the accuracy of the approach. This type of method may be useful for computational prediction of ligand binding strengths, e.g., in drug design applications. PMID:9570087

  3. Interacting agegraphic dark energy models in non-flat universe

    OpenAIRE

    Sheykhi, Ahmad

    2009-01-01

    A so-called "agegraphic dark energy" was recently proposed to explain the dark energy-dominated universe. In this Letter, we generalize the agegraphic dark energy models to the universe with spatial curvature in the presence of interaction between dark matter and dark energy. We show that these models can accommodate $w_D = -1 $ crossing for the equation of state of dark energy. In the limiting case of a flat universe, i.e. $k = 0$, all previous results of agegraphic dark en...

  4. Four-body long-range interactions between ultracold weakly-bound diatomic molecules

    Science.gov (United States)

    Lepers, M.; Quéméner, G.; Luc-Koenig, E.; Dulieu, O.

    2016-01-01

    Using the multipolar expansion of electrostatic and magnetostatic potential energies, we characterize the long-range interactions between two weakly-bound diatomic molecules, taking as an example the paramagnetic Er2 Feshbach molecules which were produced recently. Since inside each molecule individual atoms conserve their identity, the intermolecular potential energy can be expanded as the sum of pairwise atomic potential energies. In the case of Er2 Feshbach molecules, we show that the interaction between atomic magnetic dipoles gives rise to the usual {R}-3 term of the multipolar expansion, where R is the intermolecular distance, but also to additional terms scaling as {R}-5, {R}-7, and so on. Those terms are due to the interaction between effective molecular multipole moments, and are strongly anisotropic with respect to the orientation of the molecules. Similarly, the atomic pairwise van der Waals interaction results in {R}-6, {R}-8, ... terms in the intermolecular potential energy. By calculating the reduced electric-quadrupole moment of erbium ground level =-1.305 a.u., we also demonstrate that the electric–quadrupole interaction energy is negligible with respect to the magnetic dipole and van der Waals interaction energies. The general formalism presented in this article can be applied to calculate the long-range potential energy between arbitrary charge distributions composed of almost free subsystems.

  5. Intermolecular Casimir-Polder Forces in Water and near Surfaces

    CERN Document Server

    Thiyam, Priyadarshini; Sernelius, Bo E; Parsons, Drew F; Malthe-Sørenssen, Anders; Boström, Mathias

    2014-01-01

    The Casimir-Polder force is an important long range interaction involved in adsorption and desorption of molecules in fluids. We explore Casimir-Polder interactions between methane molecules in water, and between a molecule in water near SiO2 and hexane surfaces. Inclusion of the finite molecular size in the expression for the Casimir-Polder energy leads to estimates of the dispersion contribution to the binding energies between molecules and between one molecule and a planar surface.

  6. Influence of intermolecular order at the interfaces

    OpenAIRE

    Sehati, Parisa

    2012-01-01

    The work presented in this thesis covers a range of different surfaces and interfaces of organic molecules/polymers and metallic materials. It is of vita importance to understand how charge transfer processes and other electrical interactions existing at physisorped contacts can influence the electronic structure at an interface. Hence our mission in these studies was to understand the physics happening at the aforementioned surfaces and interfaces of relevance to electronic devices, mainly s...

  7. Strong interactions studies with medium energy probes

    International Nuclear Information System (INIS)

    This progress report refers to the period August 1992 to August 1993, which includes the first year of the three-year period December 1, 1992--November 30, 1995 of the existing research contract. As anticipated in the 1992--1995 proposal the major preoccupation during 1992--1993 was with Fermilab experiment E760. This experiment, whose primary objective is to make very high-resolution study of Charmonium Spectroscopy via proton-antiproton annihilations, has turned out to be a veritable gold-mine of exciting hadronic physics in other areas as well. These include the proton from factor in the time-life region, proton-antiproton forward scattering, QCD scaling laws, and light quark spectroscopy. A large fraction of the data from E760 have been analyzed during this year, and several papers have been published. In addition to the E760 experiment at Fermilab continued progress was made earlier nuclear physics-related experiments at LAMPF, MIT, and NIKHEF, and their results for publication. Topics include high- resolution electron scattering, quasi-free electron scattering and low-energy pion double charge exchange

  8. Molecular mechanisms of action of film gas analyzer, sensitive to amines. 3. Iodine and dithizone part in processes of amine interaction with film element: polyvinyl alcohol-I2-dithizone

    International Nuclear Information System (INIS)

    CNDO semiempirical method with modified potential of atomic core interaction is used to study character of interaction of the complex polyvinyl alcohol-I2 with dithizone and diethyl amine molecules. Different types of coordination of dithizne molecule to polyvinyl alcohol fragment are considered, equilibrium intermolecular distances are found and energy characteristics of the systems considered are obtained

  9. Photoinduced intra- and intermolecular electron transfer in solutions and in solid organized molecular assemblies.

    Science.gov (United States)

    Lemmetyinen, Helge; Tkachenko, Nikolai V; Efimov, Alexander; Niemi, Marja

    2011-01-14

    The present paper highlights results of a systematic study of photoinduced electron transfer, where the fundamental aspects of the photochemistry occurring in solutions and in artificially or self-assembled molecular systems are combined and compared. In photochemical electron transfer (ET) reactions in solutions the electron donor, D, and acceptor, A, have to be or to diffuse to a short distance, which requires a high concentration of quencher molecules and/or long lifetimes of the excited donor or acceptor, which cannot always be arranged. The problem can partly be avoided by linking the donor and acceptor moieties covalently by a single bond, molecular chain or chains, or rigid bridge, forming D-A dyads. The covalent combination of porphyrin or phthalocyanine donors with an efficient electron acceptor, e.g. fullerene, has a two-fold effect on the electron transfer properties. Firstly, the electronic systems of the D-A pair result in a formation of an exciplex intermediate upon excitation both in solutions and in solid phases. The formation of the exciplex accelerates the ET rate, which was found to be as fast as >10(12) s(-1). Secondly, the total reorganization energy can be as small as 0.3 eV, even in polar solvents, which allows nanosecond lifetimes for the charge separated (CS) state. Molecular assemblies can form solid heterogeneous, but organized systems, e.g. molecular layers. This results in more complex charge separation and recombination dynamics. A distinct feature of the ET in organized assemblies is intermolecular interactions, which open a possibility for a charge migration both in the acceptor and in the donor layers, after the primary intramolecular exciplex formation and charge separation in the D-A dyad. The intramolecular ET is fast (35 ps) and efficient, but the formed interlayer CS states have lifetimes in microsecond or even second time domain. This is an important result considering possible applications. PMID:21031207

  10. Interacting holographic dark energy in Brans-Dicke theory

    International Nuclear Information System (INIS)

    We study cosmological application of interacting holographic energy density in the framework of Brans-Dicke cosmology. We obtain the equation of state and the deceleration parameter of the holographic dark energy in a non-flat universe. As system's IR cutoff we choose the radius of the event horizon measured on the sphere of the horizon, defined as L=ar(t). We find that the combination of Brans-Dicke field and holographic dark energy can accommodate wD=-1 crossing for the equation of state of noninteracting holographic dark energy. When an interaction between dark energy and dark matter is taken into account, the transition of wD to phantom regime can be more easily accounted for than when resort to the Einstein field equations is made.

  11. Does the Dark Energy Interact with the Ordinary Baryonic Matter?

    Science.gov (United States)

    Harutyunian, Haik

    2015-08-01

    The possible consequences resulted due to the interaction and energy exchange between the dark energy carrier and the ordinary baryonic matter is considered. We act on the premise that the acceleration of the Universe would be impossible if no such interaction did occur. Second point to be taken into account is the structural features of baryonic matter which consist of atoms with the most mass concentrated in their nuclei. On the other hand all the objects started with the atomic nuclei and up to planets and stars exist owing to their negative binding (nuclear or gravitational) energy. Then one should expect the objects made of baryonic matter to gain energy in average if the mentioned two substances really interact. Therefore the absolute value of binding energy seems to go down both for gravitationally bound objects and atomic nuclei, thus increasing their internal excessive energy and the probability of the spontaneous decay. Any self-consistent consideration based on the common physical concepts leads one to arrive at a conclusion that the gradual decrease of nuclear binding energy makes the mass of nucleons and nuclei should grow up. Moreover, due to the decrease of the nuclear binding energy the limit of instability or radioactivity gradually shifts towards the lighter nuclei. The cosmological consequences of such a possibility are considered in this report.

  12. Alleviation of Cosmic Age Problem In Interacting Dark Energy Model

    CERN Document Server

    Wang, Shuang

    2008-01-01

    We investigate the cosmic age problem associated with the old high-$z$ quasar APM 08279 + 5255 and the oldest globular cluster M 107, both being difficult to accommodate in $\\Lambda$CDM model. By evaluating the age of the Universe in a model that has an extremely phantom like form of dark energy (DE), we show that simply introducing the dark energy alone does not remove the problem, and the interaction between dark matter (DM) and DE need to be taken into account. Next, as examples, we consider two interacting DE models. It is found that both these two interacting DE Models can predict a cosmic age much greater than that of $\\Lambda$CDM model at any redshift, and thus substantially alleviate the cosmic age problem. Therefore, the interaction between DM and DE is the crucial factor required to make the predicted cosmic ages consistent with observations.

  13. ?? production and multiple parton interactions at supercollider energies

    International Nuclear Information System (INIS)

    We extend previous calculations of direct charmonium production at large pT to SSC energies and then calculate the cross-section for ?? production due to multiple parton interactions in a single hadronic collision. We compare these results to standard ?? production considering such processes as qanti q/gg??? and discuss the possible utility of such events as a gauge of multiple parton interactions. (orig.)

  14. On the Casimir Energy of Frequency Dependent Interactions

    CERN Document Server

    Graham, N; Weigel, H

    2014-01-01

    Vacuum polarization (or Casimir) energies can be straightforwardly computed from scattering data for static field configurations whose interactions with the fluctuating field are frequency independent. In effective theories, however,such interactions are typically frequency dependent. As a consequence, the relationship between scattering data and the Green's function is modified, which may or may not induce additional contributions to the vacuum polarization energy. We discuss several examples that naturally include frequency dependent interactions: (i) scalar electrodynamics with a static background potential, (ii) an effective theory that emerges from integrating out a heavy degree of freedom, and (iii) quantum electrodynamics coupled to a frequency dependent dielectric material. In the latter case, we argue that introducing dissipation as required by the Kramers-Kronig relations requires the consideration of the Casimir energy within a statistical mechanics formalism, while in the absence of dissipation we...

  15. Systematic Uncertainties in High-Energy Hadronic Interaction Models

    Science.gov (United States)

    Zha, M.; Knapp, J.; Ostapchenko, S.

    2003-07-01

    Hadronic interaction models for cosmic ray energies are uncertain since our knowledge of hadronic interactions is extrap olated from accelerator experiments at much lower energies. At present most high-energy models are based on Grib ov-Regge theory of multi-Pomeron exchange, which provides a theoretical framework to evaluate cross-sections and particle production. While experimental data constrain some of the model parameters, others are not well determined and are therefore a source of systematic uncertainties. In this paper we evaluate the variation of results obtained with the QGSJET model, when modifying parameters relating to three ma jor sources of uncertainty: the form of the parton structure function, the role of diffractive interactions, and the string hadronisation. Results on inelastic cross sections, on secondary particle production and on the air shower development are discussed.

  16. Hadron diffractive scattering at ultrahigh energies and coulomb interaction

    CERN Document Server

    Anisovich, V V

    2016-01-01

    We study the interplay of hadronic and Coulomb interactions for $pp$ scattering at LHC energies on the basis of the previous determination of the real part of the amplitude [{\\it V.V. Anisovich, V.A. Nikonov, J. Nyiri}, Int. J. Mod. Phys. A{\\bf 30}, 1550188 (2015)]. The interference of hadron and Coulomb interactions is discussed in terms of the $K$-matrix function technique. Supposing the black disk mode for the asymptotic interaction of hadrons, we calculate interference effects for the energies right up to $\\sqrt{s}= 10^6$ TeV. It turns out that the real part of the amplitude is concentrated in the impact parameter space at the border of the black disk that results in a growth of interplay effects with the energy increase.

  17. Dancing Crystals: A Dramatic Illustration of Intermolecular Forces

    Science.gov (United States)

    Mundell, Donald W.

    2007-01-01

    Crystals of naphthalene form on the surface of an acetone solution and dance about in an animated fashion illustrating surface tension, crystallization, and intermolecular forces. Additional experiments reveal the properties of the solution. Flows within the solutions can be visualized by various means. Previous demonstrations of surface motion…

  18. Coiodação de alquenos com nucleófilos oxigenados: reações intermoleculares

    Directory of Open Access Journals (Sweden)

    Sanseverino Antonio Manzolillo

    2001-01-01

    Full Text Available A review on the electrophilic addition of iodine to alkenes in the presence of oxygen containing nucleophiles (cohalogenation reaction is presented. The intermolecular reactions are discussed with emphasis in methods of reaction and synthetic applications of the resulting vicinal iodo-functionalized products (iodohydrins, beta-iodoethers and beta-iodocarboxylates.

  19. Holographic dark energy linearly interacting with dark matter

    OpenAIRE

    Chimento, Luis P.; Forte, Mónica I.; Richarte, Martín G.

    2012-01-01

    We investigate a spatially flat Friedmann-Robertson-Walker (FRW) cosmological model with cold dark matter coupled to a modified holographic Ricci dark energy through a general interaction term linear in the energy densities of dark matter and dark energy, the total energy density and its derivative. Using the statistical method of $\\chi^2$-function for the Hubble data, we obtain $H_0=73.6$km/sMpc, $\\omega_s=-0.842$ for the asymptotic equation of state and $ z_{acc}= 0.89 $. ...

  20. Modelling transient energy release from molten fuel coolant interaction debris

    International Nuclear Information System (INIS)

    A simple model of transient energy release in a Molten Fuel Coolant Interaction is presented. A distributed heat transfer model is used to examine the effect of heat transfer coefficient, time available for rapid energy heat transfer and particle size on transient energy release. The debris is assumed to have an Upper Limit Lognormal distribution. Model predictions are compared with results from the SUW series of experiments which used thermite-generated uranium dioxide molybdenum melts released below the surface of a pool of water. Uncertainties in the physical principles involved in the calculation of energy transfer rates are discussed. (author)

  1. Interactions of Policies for Renewable Energy and Climate

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2011-07-01

    This paper explores the relationships between climate policy and renewable energy policy instruments. It shows that, even where CO2 emissions are duly priced, specific incentives for supporting the early deployment of renewable energy technologies are justified by the steep learning curves of nascent technologies. This early investment reduces costs in the longer term and makes renewable energy affordable when it needs to be deployed on a very large scale to fully contribute to climate change mitigation and energy security. The paper also reveals other noteworthy interaction effects of climate policy and renewable policy instruments on the wholesale electricity prices in deregulated markets, which open new areas for future research.

  2. Bulk-Brane Interaction and Holographic Dark Energy

    OpenAIRE

    Setare, M.R.

    2006-01-01

    In this paper we consider the bulk-brane interaction to obtain the equation of state for the holographic energy density in non-flat universe enclosed by the event horizon measured from the sphere of horizon named $L$. We assumes that the cold dark matter energy density on the brane is conserved, but the holographic dark energy density on the brane is not conserved due to brane-bulk energy exchange. Our calculation show, taking $\\Omega_{\\Lambda}=0.73$ for the present time, the lower bound of $...

  3. Intermolecular reaction screening as a tool for reaction evaluation.

    Science.gov (United States)

    Collins, Karl D; Glorius, Frank

    2015-03-17

    Synthetic organic chemistry underpins many scientific disciplines. The development of new synthetic methods proceeds with the ultimate intention of providing access to novel structural motifs or providing safer, increasingly efficient, or more economical chemical reactions. To facilitate the identification and application of new methods in solving real synthetic problems, this Account will highlight the benefits of providing a fuller picture of both the scope and limitations of new reactions, with a primary focus on the evaluation of functional group tolerance and stability of a reaction using intermolecular screens. This Account will begin with a discussion on reaction evaluation, specifically considering the suitability of a given reaction for application in target-oriented synthesis. A comparison of desirable and essential criteria when choosing a reaction is given, and a short discussion on the value of negative and qualitative data is provided. The concept of intermolecular reaction screening will be introduced, and a direct comparison with a traditional substrate scope highlights the benefits and limitations of each and thus the complementary nature of these approaches. In recent years, a number of ad hoc applications of intermolecular screens to evaluate the functional group tolerance of a reaction or the stability of functional groups to a given set of reaction conditions have been reported, and will be discussed. More recently, we have developed a formal high-throughput intermolecular screening protocol that can be utilized to rapidly evaluate new chemical reactions. This simple and rapid protocol enables a much broader evaluation of a reaction in terms of functional group tolerance and the stability of chemical motifs to the reaction conditions than is feasible with a typical reaction scope. The development, evaluation, and application of this method within our group will be discussed in detail, with both the potential benefits and limitations highlighted and discussed. In addition, we will discuss more recent applications of intermolecular screens from both industrial and academic groups. Modifications in protocols and applications will be highlighted, including problem based evaluations, assessment of biomolecule compatibility, establishment of relative rate data, and the identification of new reactivity. Such screens have been applied in diverse chemistries including C-H functionalization reactions, frustrated Lewis-pair-catalyzed hydrogenations, heterogeneous catalysis, photoredox catalysis, enantioselective organocatalysis, and polymer science. We feel that the application of intermolecular screens to such a diversity of reactions highlights the practical simplicity of such screens. A summary of the applications and potential utility of intermolecular reaction evaluation is provided. PMID:25699585

  4. Correlation energies in the random phase approximation using realistic interactions

    CERN Document Server

    Barbieri, C; Papakonstantinou, P; Roth, R

    2006-01-01

    The self-consistent random phase approximation (RPA) based on a correlated realistic nucleon-nucleon interaction is used to evaluate correlation energies in closed-shell nuclei beyond the Hartree-Fock level. The relevance of contributions associated with charge exchange excitations as well as the necessity to correct for the double counting of the second order contribution to the RPA ring summation are emphasized. Once these effects are properly accounted for, the RPA ring summation provides an efficient tool to assess the impact of long-range correlations on binding energies throughout the whole nuclear chart, which is of particular importance when starting from realistic interactions.

  5. Constraints on interacting Dark Energy models from galaxy rotation curves

    International Nuclear Information System (INIS)

    Interacting Dark Energy models have been introduced as a possible alternative to the standard ?CDM concordance cosmological scenario in order to ease the fine-tuning problems of the cosmological constant. However, the interaction of the Dark Energy field with other massive particles in the universe induces also an effective modification of structure formation processes, leading to a different dynamical behavior of density perturbations with respect to the standard scenario. In particular, high-resolution N-body simulations have recently shown that also the structural properties of highly nonlinear objects, as e.g. their average concentration at a given mass, could be significantly modified in the presence of an interaction between Dark Energy and Dark Matter. While a constant interaction strength leads to less concentrated density profiles, a steep growth in time of the coupling function has been shown to determine a large increase of halo concentrations over a wide range of masses, including the typical halos hosting luminous spiral galaxies. This determines a substantial worsening of the 'cusp-core' tension arising in the standard ?CDM model and provides a direct way to constrain the form of the Dark Energy interaction. In the present paper we make use of the outcomes of some high-resolution N-body simulations of a specific class of interacting Dark Energy models to compare the predicted rotation curves of luminous spiral galaxies forming in these cosmologies against real observational data. Our results show how some specific interacting Dark Energy scenarios featuring a steep growth in time of the coupling function — which are virtually indistinguishable from ?CDM in the background — cannot fit the observed rotation curves of luminous spiral galaxies and can therefore be ruled out only on the basis of dynamical properties of small-scale structures. Our study is a pilot investigation of the effects of a Dark Energy interaction at small scales, and demonstrates how the dynamical properties of visible galaxies can in some cases provide direct constraints on the nature of Dark Energy

  6. Observability of large weak interactions at very high energies

    International Nuclear Information System (INIS)

    The possibility is examined that some weak interaction cross sections become large at very high energies. Such effects could lead to observable weak interaction phenomena in very high energy pp and p anti p colliding beams. Apart from direct production of W's and Z's, the possibility of observable weak effects required the Higgs mass to be much larger than the mass of the vector bosons. However, for feasible experiments such effects are suppressed in many popular gauge theories, and it is expected that observable weak cross sections will not get large at high energies. Theories with more than one Higgs boson may allow large observable effects. However, it may soon be possible to rule out such theories on the basis of new experimental data and more detailed phenomenological analyses now in progress. Also discussed is how to experimentally identify weak interaction effects at the very high energy colliding beam machines. The method consists of the detection of parity violating effects in the production of hadron resonances. Numerical results indicate that such effects due to the production of W's and Z's should be observable at Isabelle energies. Observation of such effects may be the best method to establish that new behavior of cross sections is not hadronic in origin. By observing hadron resonances with different quantum numbers, it is possible to study the flavor dependence of high energy weak effects; the energy dependence of the phi/? ratio may even be a useful signal of W production. In addition, weak interaction cross sections are calculated for the scattering of polarized beams. The possibility of observing unconventional kinds of weak interactions is briefly considered

  7. Making Energy Interventions more Effective : Situation, Interaction, and Precondition

    OpenAIRE

    Henning, Annette

    2015-01-01

    A main purpose of this paper is to propose to policy makers, building professionals, and other non-social scientists a way to make energy interventions more culturally informed and, thereby, more effective. The case study on house purchasers gives an ample illustration of the richer results that can be achieved by paying attention to three aspects of energy efficiency initiatives: the contexts and situations of choice in each particular case, the interaction among relevant social actors, and ...

  8. Hadron spectra from high energy proton proton interactions

    Energy Technology Data Exchange (ETDEWEB)

    Diebold, R.; /Argonne; Guerriero, L.; /Bari U.; Lanou, R.; /Brown U.; Cocconi, G.; /CERN; Gittelman, B.; Loh, E.; /Cornell U., Phys. Dept.; Friedman, J.; Kendall, H.; Rosenson, L.; /MIT; Awschalom, M.; Billinge, R.; Brenner, A.E.; Juhala, R.; Peters, R.; Read, A.L.; Reardon, P.J.; Schievell, J.F.; Shafer, R.; White, T.O.; /Fermilab

    1970-06-01

    It is proposed to measure the hadron spectra resulting from high energy proton-proton collisions using a single arm focusing spectrometer. These measurements will provide elastic and inelastic P-P cross sections for incident beam energies up to 200 GeV/c and for momentum transfers |t| from 0.01 up to about 10 to 15 (BeV/c){sup 2}. In addition, they will obtain yields of pions and kaons produced in the interactions.

  9. Distributed energy resources in grid interactive AC microgrids

    OpenAIRE

    Wang, Xiongfei; Guerrero, Josep; Chen, Zhe; Frede BLAABJERG

    2010-01-01

    Increased penetration of distributed energy resources (DER) and large-scale deployment of renewable energy sources are challenging the entire architecture of traditional power system. Microgrid, featuring higher flexibility and reliability, becomes an attractive candidate for the configuration of future electrical power system. This paper gives an overview of DER units in the grid interactive ac microgrid. The options in structures and control methods of power electronics interfaced DER units...

  10. Anti-? dominance in pp interactions at intermediate energies

    International Nuclear Information System (INIS)

    The ?+/?- ratio originating from string decays is predicted to be >1 in pp interaction at SPS energies. The anti-? dominance increases with decreasing beam energy. This surprising behaviour is caused by the combinatorics of quark-antiquark production in small, finite strings. Since this behaviour is not found in a statistical description of hadron production in pp collisions, it may serve as a potent observable to probe the hadronization mechanism in such collisions. (author)

  11. Distributed energy resources in grid interactive AC microgrids

    DEFF Research Database (Denmark)

    Wang, Xiongfei; Guerrero, Josep; Chen, Zhe; Blaabjerg, Frede

    2010-01-01

    Increased penetration of distributed energy resources (DER) and large-scale deployment of renewable energy sources are challenging the entire architecture of traditional power system. Microgrid, featuring higher flexibility and reliability, becomes an attractive candidate for the configuration of future electrical power system. This paper gives an overview of DER units in the grid interactive ac microgrid. The options in structures and control methods of power electronics interfaced DER units ar...

  12. Intermolecular Hydrogen Transfer in Isobutane Hydrate

    Directory of Open Access Journals (Sweden)

    Takeshi Sugahara

    2012-05-01

    Full Text Available Electron spin resonance (ESR spectra of butyl radicals induced with γ-ray irradiation in the simple isobutane (2-methylpropane hydrate (prepared with deuterated water were investigated. Isothermal annealing results of the γ-ray-irradiated isobutane hydrate reveal that the isobutyl radical in a large cage withdraws a hydrogen atom from the isobutane molecule through shared hexagonal-faces of adjacent large cages. During this “hydrogen picking” process, the isobutyl radical is apparently transformed into a tert-butyl radical, while the sum of isobutyl and tert-butyl radicals remains constant. The apparent transformation from isobutyl to tert-butyl radicals is an irreversible first-order reaction and the activation energy was estimated to be 35 ± 3 kJ/mol, which was in agreement with the activation energy (39 ± 5 kJ/mol of hydrogen picking in the γ-ray-irradiated propane hydrate with deuterated water.

  13. Proton tunnelling in intermolecular hydrogen bonds

    Energy Technology Data Exchange (ETDEWEB)

    Horsewill, A.J. [Nottingham Univ. (United Kingdom); Johnson, M.R. [Institut Max von Laue - Paul Langevin (ILL), 38 - Grenoble (France); Trommsdorff, H.P. [Grenoble-1 Univ., 38 (France)

    1997-04-01

    The wavefunctions of particles extend beyond the classically accessible regions of potential energy-surfaces (PES). A manifestation of this partial delocalization is the quantum-mechanical tunneling effect which enables a particle to escape from a metastable potential-well. Tunnelling is most important for the lightest atoms, so that the determination of its contribution to proton transfer, one of the most fundamental chemical reactions, is an important issue. QENS and NMR techniques have been employed to study the motion of protons in the hydrogen bond of benzoic-acid crystals, a system which has emerged as a particularly suitable model since proton transfer occurs in a near symmetric double-well potential. The influence of quantum tunnelling was revealed and investigated in these experiments. This work provides an experimental benchmark for theoretical descriptions of translational proton-tunnelling. (author). 7 refs.

  14. Experimental studies of pion-nucleus interactions at intermediate energies

    International Nuclear Information System (INIS)

    This report summarizes the work on experimental research in intermediate energy nuclear physics carried out at New Mexico State University in 1991 under a great from the US Department of Energy. Most of these studies have involved investigations of various pion-nucleus interactions. The work has been carried out both with the LAMPF accelerator at the Los Alamos National Laboratory and with the cyclotron at the Paul Scherrer Institute (PSI) near Zurich, Switzerland. Part of the experimental work involves measurements of new data on double-charge-exchange scattering, using facilities at LAMPF which we helped modify, and on pion absorption, using a new detector system at PSI that covers nearly the full solid-angle region which we helped construct. Other work involved preparation for future experiments using polarized nuclear targets and a new high-resolution spectrometer system for detecting ?0 mesons. We also presented several proposals for works to be done in future years, involving studies related to pi-mesonic atoms, fundamental pion-nucleon interactions, studies of the difference between charged and neutral pion interactions with the nucleon, studies of the isospin structure of pion-nucleus interactions, and pion scattering from polarized 3He targets. This work is aimed at improving our understanding of the pion-nucleon interaction, of the pion-nucleus interaction mechanism, and of nuclear structure

  15. Effects of salt on intermolecular polyelectrolyte complexes formation between cationic microgel and polyanion.

    Science.gov (United States)

    Ogawa, Kazuyoshi

    2015-12-01

    The study of interpolyelectrolyte complex (IPEC) formation between cationic microgel and polyanion was presented. The size and molecular weight of cationic microgel are much larger than those of linear anionic polyelectrolyte. The resulting IPEC was divided by dynamic light scattering (DLS), static light scattering (SLS), and turbidity or spectrometry; (i) water-soluble intra-particle complexes consisting of one microgel to which linear polyelectrolytes bind; (ii) complex coacervates (inter-particle complexes composed of aggregated intra-particle complexes); and (iii) insoluble amorphous precipitates. These types depended on not only the mixing ratio of polyanion to cationic microgel but also salt concentration. This trend was discussed from IPEC's composition, thermodynamics of IPEC formation and the salt effect on intermolecular interactions which were expected in IPEC formation. The results obtained from the use of microgel in IPEC's study suggested that not only electrostatic interaction but also hydrophobic interaction play an important role in the aggregation or association of IPEC. PMID:26472211

  16. Energy spectrum of the equal spin-spin interactions Hamiltonian

    CERN Document Server

    Kessel, A R; Yakovleva, N M

    2002-01-01

    The energy spectrum of eigenvalues of the equal spin-spin interactions (ESSI) Hamiltonian has been found. The obtained spectrum is free from limitations imposed on number of spins and parameters of the ESSI Hamiltonian. This model can be used for consideration of spin dynamics of mesoscopic systems and molecules with large number of nuclei spins.

  17. Dimensionality of Local Minimizers of the Interaction Energy

    KAUST Repository

    Balagué, D.

    2013-05-22

    In this work we consider local minimizers (in the topology of transport distances) of the interaction energy associated with a repulsive-attractive potential. We show how the dimensionality of the support of local minimizers is related to the repulsive strength of the potential at the origin. © 2013 Springer-Verlag Berlin Heidelberg.

  18. Colloid interaction energies for physically and chemically heterogeneous porous media

    Science.gov (United States)

    The mean and variance of the colloid interaction energy (phi*) as a function of separation distance (h) were calculated on physically and/or chemically heterogeneous solid surfaces at the representative elementary area (REA) scale. Nanoscale roughness was demonstrated to have a significant influence...

  19. MINT - A Simple Model for Low Energy Hadronic Interactions

    CERN Document Server

    Schmelling, M

    2005-01-01

    The bulk of inelastic hadronic interactions is characterized by longitudinal phase space and exponentially damped transverse momentum spectra. A simple model with only a single adjustable parameter is presented, making it a very convenient tool for systematic studies, which gives a surprisingly good description of pA-collisions at 920 GeV beam energy.

  20. Polarization phenomena in electromagnetic interactions at intermediate energies

    Energy Technology Data Exchange (ETDEWEB)

    Burkert, V.

    1990-01-01

    Recent results of polarization measurements in electromagnetic interactions at intermediate energies are discussed. Prospects of polarization experiments at the new CW electron accelerators, as well as on upgraded older machines are outlined. It is concluded that polarization experiments will play a very important role in the study of the structure of the nucleon and of light nuclei. 72 refs.

  1. Polarization phenomena in electromagnetic interactions at intermediate energies

    International Nuclear Information System (INIS)

    Recent results of polarization measurements in electromagnetic interactions at intermediate energies are discussed. Prospects of polarization experiments at the new CW electron accelerators, as well as on upgraded older machines are outlined. It is concluded that polarization experiments will play a very important role in the study of the structure of the nucleon and of light nuclei. 72 refs

  2. Interactions between renewable energy policy and renewable energy industrial policy: A critical analysis of China's policy approach to renewable energies

    International Nuclear Information System (INIS)

    This paper analyzes China's policy approach to renewable energies and assesses how effectively China has met the ideal of appropriate interactions between renewable energy policy and renewable energy industrial policy. First we briefly discuss the interactions between these two policies. Then we outline China's key renewable energy and renewable industrial policies and find that China's government has well recognized the need for this policy interaction. After that, we study the achievements and problems in China's wind and solar PV sector during 2005–2012 and argue that China's policy approach to renewable energies has placed priority first on developing a renewable energy manufacturing industry and only second on renewable energy itself, and it has not effectively met the ideal of appropriate interactions between renewable energy policy and renewable energy industrial policy. Lastly, we make an in-depth analysis of the three ideas underlying this policy approach, that is, the green development idea, the low-carbon leadership idea and indigenous innovation idea. We conclude that Chinas' policy approach to renewable energies needs to enhance the interactions between renewable energy policy and renewable energy industrial policy. The paper contributes to a deeper understanding of China's policy strategy toward renewable energies. -- Highlights: •Interactions between renewable energy policy and renewable energy industrial policy are discussed. •China's key renewable energy and renewable energy industrial policies are outlined. •Two empirical cases illustrate China's policy approach to renewable energies. •We argue that China needs to enhance the interactions between the two policies. •Three ideas underlie China's policy approach to renewable energies

  3. The interaction between dark energy and dark matter

    International Nuclear Information System (INIS)

    In this review we first present a general formalism to study the growth of dark matter perturbations in the presence of interactions between dark matter(DM) and dark energy(DE). We also study the signature of such interaction on the temperature anisotropies of the large scale cosmic microwave background (CMB). We find that the effect of such interaction has significant signature on both the growth of dark matter structure and the late Integrated Sachs Wolfe effect(ISW). We further discuss the potential possibility to detect the coupling by cross-correlating CMB maps with tracers of the large scale structure. We finally confront this interacting model with WMAP 5-year data as well as other data sets. We find that in the 1? range, the constrained coupling between dark sectors can solve the coincidence problem.

  4. Interactions of quarks and gluons with nuclei at intermediate energies

    Energy Technology Data Exchange (ETDEWEB)

    Mueller, A.H. [Columbia Univ., New York, NY (United States)

    1994-04-01

    Some processes involving the interaction of medium energy quarks and gluons with nuclear matter are described. Possible mechanisms for the A-dependence of the energy loss of leading protons produced in proton-nucleus collisions are given, and an experiment which may help to distinguish these mechanisms is described. A possible color transparency experiment at CEBAF is described. Experiments to measure energy loss of quarks in nuclear matter and the formation time of hadrons are discussed along with the possibilities of measuring {sigma}{sub J}/{psi} and {sigma}{sub {psi}{prime}} at CEBAF.

  5. Energies and pressures in viruses: contribution of nonspecific electrostatic interactions

    CERN Document Server

    Šiber, Antonio; Podgornik, Rudolf

    2011-01-01

    We summarize some aspects of electrostatic interactions in the context of viruses. A simplified but, within well defined limitations, reliable approach is used to derive expressions for electrostatic energies and the corresponding osmotic pressures in single-stranded RNA viruses and double-stranded DNA bacteriophages. The two types of viruses differ crucially in the spatial distribution of their genome charge which leads to essential differences in their free energies, depending on the capsid size and total charge in a quite different fashion. Differences in the free energies are trailed by the corresponding characteristics and variations in the osmotic pressure between the inside of the virus and the external bathing solution.

  6. Six-dimensional calculation of intermolecular states in molecule-large molecule complexes by filter diagonalization: Benzene - H2O

    International Nuclear Information System (INIS)

    We present an approach toward the dynamically exact calculation of intermolecular states in molecule-large molecule complexes. The approach employs an intermolecular Hamiltonian specifically formulated with the case of molecule-large molecule complexes in mind. In addition, it makes use of filter diagonalization techniques to diagonalize that Hamiltonian. The approach is applied to the calculation of J=0 intermolecular states below about 110 cm-1 in the benzene -H2O complex. The results of the calculation are interpreted in terms of five internal rotation states, a doubly degenerate bending mode and a singly degenerate stretching mode, the latter two modes involving the relative translation of the monomer moieties in the complex. The internal rotation states are discussed in the context of the two-dimensional, free internal rotation/water in-plane torsion model of Pribble et al. [J. Chem. Phys. 103, 531 (1995)]. It is shown that that model is largely successful in identifying the important features of the low-energy benzene - H2O states that involve rotation and/or libration of water. It is also shown, though, that multimode couplings can have major effects on the detailed nature of the intermolecular level structure of the species. copyright 1999 American Institute of Physics

  7. Effective low-energy Hamiltonians for interacting nanostructures

    Science.gov (United States)

    Kinza, Michael; Ortloff, Jutta; Honerkamp, Carsten

    2010-10-01

    We present a functional renormalization group (fRG) treatment of trigonal graphene nanodisks and composites thereof, modeled by finite-size Hubbard-like Hamiltonians with honeycomb lattice structure. At half filling, the noninteracting spectrum of these structures contains a certain number of half-filled states at the Fermi level. For the case of trigonal nanodisks, including interactions between these degenerate states was argued to lead to a large ground state spin with potential spintronics applications [M. Ezawa, Eur. Phys. J. B 67, 543 (2009)10.1140/epjb/e2009-00041-7]. Here we perform a systematic fRG flow where the excited single-particle states are integrated out with a decreasing energy cutoff, yielding a renormalized low-energy Hamiltonian for the zero-energy states that includes effects of the excited levels. The numerical implementation corroborates the results obtained with a simpler Hartree-Fock treatment of the interaction effects within the zero-energy states only. In particular, for trigonal nanodisks the degeneracy of the one-particle-states with zero energy turns out to be protected against influences of the higher levels. As an explanation, we give a general argument that within this fRG scheme the zero-energy degeneracy remains unsplit under quite general conditions and for any size of the trigonal nanodisk. We also discuss a second class of nanostructures, bow-tie-shaped systems, where the zero-energy states are not protected.

  8. Reconstruction of the dark matter-vacuum energy interaction

    Science.gov (United States)

    Wang, Yuting; Zhao, Gong-Bo; Wands, David; Pogosian, Levon; Crittenden, Robert G.

    2015-11-01

    An interaction between the vacuum energy and dark matter is an intriguing possibility which may offer a way of solving the cosmological constant problem. Adopting a general prescription for momentum exchange between the two dark components, we reconstruct ? (a ), the temporal evolution of the coupling strength between dark matter and vacuum energy, in a nonparametric Bayesian approach using combined observational data sets from the cosmic microwave background, supernovae and large scale structure. An evolving interaction between the vacuum energy and dark matter removes some of the tensions between different data sets. However, it is not preferred over ? CDM in the Bayesian sense, as improvement in the fit is not sufficient to compensate for the increase in the volume of the parameter space.

  9. Reconstruction of the dark matter-vacuum energy interaction

    CERN Document Server

    Wang, Yuting; Wands, David; Pogosian, Levon; Crittenden, Robert G

    2015-01-01

    An interaction between the vacuum energy and dark matter is an intriguing possibility which may offer a way of solving the cosmological constant problem. Adopting a general prescription for momentum exchange between the two dark components, we reconstruct the temporal evolution of the coupling strength between dark matter and vacuum energy, $\\alpha(a)$ in a non-parametric Bayesian approach using the combined observational datasets from the cosmic microwave background, supernovae and large scale structure. An evolving interaction between the vacuum energy and dark matter removes some of the tensions between different types of datasets, and is favoured at $\\sim95\\%$ CL if we include the baryon acoustic oscillations measurements of the BOSS Lyman-$\\alpha$ forest sample.

  10. THz absorption spectrum of the CO2–H2O complex: Observation and assignment of intermolecular van der Waals vibrations

    DEFF Research Database (Denmark)

    Andersen, Jonas; Heimdal, J.

    2014-01-01

    Terahertz absorption spectra have been recorded for the weakly bound CO2–H2O complex embedded in cryogenic neon matrices at 2.8 K. The three high-frequency van der Waals vibrational transitions associated with out-of-plane wagging, in-plane rocking, and torsional motion of the isotopic H2O subunit have been assigned and provide crucial observables for benchmark theoretical descriptions of this systems’ flat intermolecular potential energy surface. A (semi)-empirical value for the zero-point energy of 273 ± 15 cm?1 from the class of intermolecular van der Waals vibrations is proposed and the combination with high-level quantum chemical calculations provides a value of 726 ± 15 cm?1 for the dissociation energy D0

  11. Equilibrium surface tension and the interaction energy of DMSO with tert-butyl alcohol or iso-amyl alcohol at various temperatures

    International Nuclear Information System (INIS)

    Highlights: • Surface tension of non-ideal binary systems of alcohol/DMSO determined. • The surface tension data of binary mixtures were correlated with five equations. • The interaction energy values were calculated by using LWW model. • The U12 value shows different behavior for two systems with increasing temperature. - Abstract: Surface tension of binary mixtures of tert-butyl alcohol (TBA) and iso-amyl alcohol (IAA) with DMSO (dimethyl sulfoxide) were measured over the entire concentration range at pressure of 82.5 kPa at temperatures between (298.15 and 328.15) K. Correlating the surface tension and surface tension deviation of the above mentioned binary systems was performed with empirical and thermodynamic based models. The average relative error obtained from the comparison of experimental and calculated surface tension values for the two binary systems with five models at various temperatures is less than 2%. The effect of temperature on the interaction energy values in binary mixtures has been used to obtain information about solute structural effects on DMSO. Also, the experimental data were used to evaluate the nature and type of intermolecular interactions in binary mixtures

  12. Inelastic interactions of high energy particles with nuclei

    International Nuclear Information System (INIS)

    Problems of inelastic interaction of high energy particles (protons, pions etc.) with nuclei: are discussed in the lecture. Main attention is paid to phenomena related to the growth of lengths of secondary particle production at high energies. Multiperipheral parton model data are used. Three models of hadron multiple production on nuclei are considered and compared: dominance model of fan-shaped diagrams (DMED) eikonal model (EM), based on the Glanber multiple scattering theory and additive quark model (AQM), which to some extent is a synthesis of the first two models. The above models differ in describing spacetime picture of interaction process. In DMED the absence of leading particle rescattering and presence of cascade of secondary particles of moderate energy are noted. Successive rescattering of leading particles at complete absence of the cascade of secondary particles is investigated in the framework of the EM. Both types of rescattering exist in the AQM determined by quark state of initial and secondary particles. Two-part correlations are studied in particle production on nuclei, correlations in jets etc. It is shown that all known experimental data can be described in the framework of multiperipheral parton model of strong interactions. The AQM complemented by the conception of production lengths provides a perfect quantitative description of inclusive spectra in hadron-nuclei as well as in lepton-nuclei interactions

  13. Mutually interacting tachyon dark energy with variable G and ?

    International Nuclear Information System (INIS)

    We consider a tachyonic scalar field as a model of dark energy with interaction between components in the case of variable G and ?. We assume a flat Universe with a specific form of scale factor and study cosmological parameters numerically and graphically. Statefinder analysis is also performed. For a particular choice of interaction parameters we succeed in obtaining an analytical expression of densities. We find that our model will be stable at the late stage but there is an instability in the early Universe, so we propose this model as a realistic model of our Universe. (research papers)

  14. Mutually interacting tachyon dark energy with variable G and ?

    Science.gov (United States)

    Sadeghi, Jafar; Khurshudyan, Martiros; Hakobyan, Margarit; Farahani, Hoda

    2015-02-01

    We consider a tachyonic scalar field as a model of dark energy with interaction between components in the case of variable G and ?. We assume a flat Universe with a specific form of scale factor and study cosmological parameters numerically and graphically. Statefinder analysis is also performed. For a particular choice of interaction parameters we succeed in obtaining an analytical expression of densities. We find that our model will be stable at the late stage but there is an instability in the early Universe, so we propose this model as a realistic model of our Universe.

  15. Calciate-mediated intermolecular hydroamination of diphenylbutadiyne with secondary anilines.

    Science.gov (United States)

    Glock, Carsten; Görls, Helmar; Westerhausen, Matthias

    2012-07-18

    Calciate-mediated intermolecular hydroamination of diphenylbutadiyne with N-phenyl and N-isopropyl-substituted anilines yields E- and Z-isomers of the corresponding 1-anilino-1,4-diphenylbut-1-ene-3-yne. In the case of HNPh(2) solely heterobimetallic K(2)Ca(NPh(2))(4) is able to effectively catalyze this hydroamination reaction in tetrahydrofuran at elevated temperatures. PMID:22684250

  16. Highly Stereoselective Intermolecular Haloetherification and Haloesterification of Allyl Amides.

    Science.gov (United States)

    Soltanzadeh, Bardia; Jaganathan, Arvind; Staples, Richard J; Borhan, Babak

    2015-08-10

    An organocatalytic and highly regio-, diastereo-, and enantioselective intermolecular haloetherification and haloesterification reaction of allyl amides is reported. A variety of alkene substituents and substitution patterns are compatible with this chemistry. Notably, electronically unbiased alkene substrates exhibit exquisite regio- and diastereoselectivity for the title transformation. We also demonstrate that the same catalytic system can be used in both chlorination and bromination reactions of allyl amides with a variety of nucleophiles with little or no modification. PMID:26110812

  17. Contemporary models of high energy interactions: present status and perspectives

    Science.gov (United States)

    Ostapchenko, S. S.

    2003-05-01

    Modern approaches to the description of high energy hadronic and nuclear collisions are reviewed in connection with extensive air shower (EAS) physics. Special attention is devoted to the so-called semihard partonic processes which appear to dominate the interactions at very high energies. It is shown that a corresponding treatment can be developed in the framework of the Gribov-Regge approach, introducing a concept of 'semihard Pomeron', the latter being a t-channel iteration of the phenomenological 'soft' Pomeron and QCD parton ladder. A comparison is made with the QCD eikonal (mini-jet) scheme and essential differences as well as observable consequences for EAS development are analysed in detail. The role of nonlinear interaction contributions described by enhanced Pomeron diagrams is also investigated. It is demonstrated that such diagrams provide important screening corrections to the interaction mechanism and allow us to resolve a seeming contradiction between realistic parton momentum distributions and observed energy dependence of hadron-hadron cross sections. A modification of the standard scheme by correct treatment of energy-momentum sharing mechanism in hadronic collisions is also considered. Finally, we discuss possible ways to discriminate between the alternative approaches.

  18. Exploring the properties of valence electron based potential functions for the nonbonded interactions in atomistic force fields

    CERN Document Server

    Plattner, Nuria

    2016-01-01

    The possibility to construct and parametrize the nonbonded interactions in atomistic force fields based on the valence electron structure of molecules is explored in this paper. Three different charge distribution models using simple valence electron based potential functions are introduced and compared. It is shown that the three models can be constructed such that they only require one adjustable parameter for the electrostatic potential of a molecule. The accuracy of the electrostatic potential is evaluated for the three models and compared to population-derived charges and higher order multipole moments for a set of 12 small molecules. Furthermore the accuracy and parametrization of the interaction energies of the three models is evaluated based on {\\it ab initio} intermolecular interaction energies. It is shown that the valence electron potential models provide systematic advantages over conventional point charge models for the calculation of intermolecular interaction energies even with the very simple ...

  19. Accuracy of Several Wave Function and Density Functional Theory Methods for Description of Noncovalent Interaction of Saturated and Unsaturated Hydrocarbon Dimers.

    Czech Academy of Sciences Publication Activity Database

    Granatier, Jaroslav; Pito?ák, M.; Hobza, Pavel

    2012-01-01

    Ro?. 8, ?. 7 (2012), s. 2282-2292. ISSN 1549-9618 Grant ostatní: APVV(SK) APVV-0059-10 Institutional research plan: CEZ:AV0Z40550506 Keywords : intermolecular interaction energies * Plesset perturbation-theory * molecular-orbital methods * protein rubredoxin Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 5.389, year: 2012

  20. INTERMOLECULAR ENERGY AND SURFACE TENSION IN PURE NON AUTOASSOCIATED LIQUIDS

    Directory of Open Access Journals (Sweden)

    Gabriel Hernández de la Torre

    2010-08-01

    Full Text Available Se deduce una ecuación para calcular la energía libre en la superficie de un líquido, como una función de las densidades ortobáricas. Se considera la contribución molecular al área de la superficie de moléculas globulares, moléculas planas y parafinas normales y se calcula la tensión superficial para las especies anteriores. Los valores calculados de la tensión superficial presentan excelente concordancia con los valores experimentales.

  1. On the importance and origin of aromatic interactions in chemistry and biodisciplines.

    Czech Academy of Sciences Publication Activity Database

    Riley, Kevin Eugene; Hobza, Pavel

    2013-01-01

    Ro?. 46, ?. 4 (2013), s. 927-936. ISSN 0001-4842 R&D Projects: GA ?R GBP208/12/G016 Grant ostatní: Operational Program Research and Development for Innovations(XE) CZ.1.05/2.1.00/03.0058 Institutional support: RVO:61388963 Keywords : pi-pi interactions * potential-energy surface * ab-initio calculation * benzene dimer * intermolecular interaction * protein rubredoxin Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 24.348, year: 2013

  2. New holographic dark energy model with non-linear interaction

    CERN Document Server

    Oliveros, A

    2014-01-01

    In this paper the cosmological evolution of a holographic dark energy model with a non-linear interaction between the dark energy and dark matter components in a FRW type flat universe is analysed. In this context, the deceleration parameter $q$ and the equation state $w_{\\Lambda}$ are obtained. We found that, as the square of the speed of sound remains positive, the model is stable under perturbations since early times; it also shows that the evolution of the matter and dark energy densities are of the same order for a long period of time, avoiding the so--called coincidence problem. We have also made the correspondence of the model with the dark energy densities and pressures for the quintessence and tachyon fields. From this correspondence we have reconstructed the potential of scalar fields and their dynamics.

  3. New holographic dark energy model with non-linear interaction

    Science.gov (United States)

    Oliveros, A.; Acero, Mario A.

    2015-05-01

    In this paper the cosmological evolution of a holographic dark energy model with a non-linear interaction between the dark energy and dark matter components in a FRW type flat universe is analysed. In this context, the deceleration parameter q and the equation state w ? are obtained. We found that, as the square of the speed of sound remains positive, the model is stable under perturbations since early times; it also shows that the evolution of the matter and dark energy densities are of the same order for a long period of time, avoiding the so-called coincidence problem. We have also made the correspondence of the model with the dark energy densities and pressures for the quintessence and tachyon fields. From this correspondence we have reconstructed the potential of scalar fields and their dynamics.

  4. On the nuclear interaction. Potential, binding energy and fusion reaction

    CERN Document Server

    Casinos, I

    2008-01-01

    The nuclear interaction is responsible for keeping neutrons and protons joined in an atomic nucleus. Phenomenological nuclear potentials, fitted to experimental data, allow one to know about the nuclear behaviour with more or less success where quantum mechanics is hard to be used. A nuclear potential is suggested and an expression for the potential energy of two nuclear entities, either nuclei or nucleons, is developed. In order to estimate parameters in this expression, some nucleon additions to nuclei are considered and a model is suggested as a guide of the addition process. Coulomb barrier and energy for the addition of a proton to each one of several nuclei are estimated by taking into account both the nuclear and electrostatic components of energy. Studies on the binding energies of several nuclei and on the fusion reaction of two nuclei are carried out.

  5. Accurate nuclear radii and binding energies from a chiral interaction

    CERN Document Server

    Ekstrom, A; Wendt, K A; Hagen, G; Papenbrock, T; Carlsson, B D; Forssen, C; Hjorth-Jensen, M; Navratil, P; Nazarewicz, W

    2015-01-01

    The accurate reproduction of nuclear radii and binding energies is a long-standing challenge in nuclear theory. To address this problem two-nucleon and three-nucleon forces from chiral effective field theory are optimized simultaneously to low-energy nucleon-nucleon scattering data, as well as binding energies and radii of few-nucleon systems and selected isotopes of carbon and oxygen. Coupled-cluster calculations based on this interaction, named NNLOsat, yield accurate binding energies and radii of nuclei up to 40Ca, and are consistent with the empirical saturation point of symmetric nuclear matter. In addition, the low-lying collective 3- states in 16O and 40Ca are described accurately, while spectra for selected p- and sd-shell nuclei are in reasonable agreement with experiment.

  6. Interaction of the intermediate energy neutrino with nuclei

    Science.gov (United States)

    Bugayev, E. V.; Rudzskiy, M. A.; Bisnovatyy-Kogan, G. S.; Seidov, Z. F.

    1980-01-01

    The interaction of the electronic neutrino with nuclei C-12, O-16, Ci-37, Fe-56, Ga-71, and Br81 is considered for neutrino energy up to 300 MeV. The nuclei are described by single-particle shell-model with Woods-Saxon potential. The parameters of the potential are specially chosen for each nuclei in order to describe correctly the upper occupied single particle levels of the nuclei. The cross sections for inelastic and elastic interactions of neutrino with nuclei are calculated within this model, taking into account charged and neutral current of weak interaction. The neutral currents are described by Weinberg theory. The results of the cross section calculations are presented and the comparisons with the results of the other authors are given. The possibilities of improvement of the exactness of obtained results are discussed. Some details of the calculations are included.

  7. Interacting new agegraphic version of pilgrim dark energy

    Science.gov (United States)

    Jawad, Abdul; Abbas, G.

    2015-05-01

    We discuss the cosmological evolution of the interacting pilgrim dark energy (DE) with conformal age of the universe in flat FRW universe. We evaluate the equation of state (EoS) parameter for three different values of interacting parameter which evolutes the universe from matter dominated to phantom-like eras by evolving quintessence as well as vacuum DE eras. We also give the correspondence of the present DE model with quintessence, tachyon, k-essence, dilaton and DBI-essence scalar field models. We discuss the dynamics of scalar field and corresponding potentials. We find that the behavior of scalar field, corresponding potentials and kinetic energy terms (in k-essence and dilaton field) consistent with the present day observations. Also, cosmological planes such as ? ?rtheta-? ?rtheta' and r - s planes corresponds to ?CDM limit.

  8. T asymmetry in the strong interaction at medium energies

    International Nuclear Information System (INIS)

    We examine current intermediate-energy nucleon-nucleon data sensitive to T asymmetry and conclude that of these data, some np polarization and asymmetry measurements give the best evidence that T is good, despite the fact that these data have the largest errors of any of the data considered. This conclusion is reached using a one-boson-exchange potential due to Bryan and Gersten, wherein T is violated at short distances. We argue that any short-range T-asymmetric model would probably lead to the same conculsion. We show that the current N-N data admit the possibility of strong-interaction T asymmetry, so long as it be of short range. For experimentalists who may search for strong-interaction T violation in intermediate energy N-N scattering, we suggest maximum errors for several measurements so that any such T violation may not be missed

  9. A phenomenological analysis of antiproton interactions at low energies

    CERN Document Server

    Bianconi, A; Bussa, M P; Lodi-Rizzini, E; Venturelli, L; Zenoni, A

    2000-01-01

    We present an optical potential analysis of the antiproton-protoninteractions at low energies. Our optical potential is purely phenomenological,and has been parametrized on data recently obtained by the Obelix Collaborationat momenta below 180 MeV/c. It reasonably fits annihilation and elastic databelow 600 MeV/c, and allows us for an evaluation of the elastic cross sectionand rho-parameter down to zero kinetic energy. Moreover we show that themechanism that depresses antiproton-nucleus annihilation cross sections at lowenergies is present in antiproton-proton interactions too.

  10. Self-interaction errors in nuclear energy density functionals

    CERN Document Server

    Chamel, N

    2010-01-01

    When applied to a single nucleon, nuclear energy density functionals may yield a non-vanishing internal energy thus implying that the nucleon is interacting with itself. It is shown how to avoid this unphysical feature for semi-local phenomenological functionals containing all possible bilinear combinations of local densities and currents up to second order in the derivatives. The method outlined in this Rapid Communication could be easily extended to functionals containing higher order terms, and could serve as a guide for constraining the time-odd part of the functional.

  11. Interaction of Compliance and Voluntary Renewable Energy Markets

    Energy Technology Data Exchange (ETDEWEB)

    Bird, Lori [National Renewable Energy Lab. (NREL), Golden, CO (United States); Lokey, Elizabeth [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2007-10-01

    In recent years, both compliance and voluntary markets have emerged to help support the development of renewable energy resources. Both of these markets are growing rapidly and today about half of U.S. states have RPS policies in place, with a number of these policies adopted in the last several years. In addition, many states have recently increased the stringency of their RPS policies. This paper examines key market interaction issues between compliance and voluntary renewable energy markets. It provides an overview of both the compliance and voluntary markets, addressing each market's history, purpose, size, scope, and benefits while addressing issues, including double counting.

  12. Regional Analysis of Energy, Water, Land and Climate Interactions

    Science.gov (United States)

    Tidwell, V. C.; Averyt, K.; Harriss, R. C.; Hibbard, K. A.; Newmark, R. L.; Rose, S. K.; Shevliakova, E.; Wilson, T.

    2014-12-01

    Energy, water, and land systems interact in many ways and are impacted by management and climate change. These systems and their interactions often differ in significant ways from region-to-region. To explore the coupled energy-water-land system and its relation to climate change and management a simple conceptual model of demand, endowment and technology (DET) is proposed. A consistent and comparable analysis framework is needed as climate change and resource management practices have the potential to impact each DET element, resource, and region differently. These linkages are further complicated by policy and trade agreements where endowments of one region are used to meet demands in another. This paper reviews the unique DET characteristics of land, energy and water resources across the United States. Analyses are conducted according to the eight geographic regions defined in the 2014 National Climate Assessment. Evident from the analyses are regional differences in resources endowments in land (strong East-West gradient in forest, cropland and desert), water (similar East-West gradient), and energy. Demands likewise vary regionally reflecting differences in population density and endowment (e.g., higher water use in West reflecting insufficient precipitation to support dryland farming). The effect of technology and policy are particularly evident in differences in the energy portfolios across the eight regions. Integrated analyses that account for the various spatial and temporal differences in regional energy, water and land systems are critical to informing effective policy requirements for future energy, climate and resource management. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

  13. Photoinduced tautomerism of 2,6-dicarbomethoxyphenol in DMF–water mixtures: Perturbation from intermolecular processes

    Energy Technology Data Exchange (ETDEWEB)

    Mandal, Abhijit, E-mail: pcam2008@gmail.com [Department of Chemistry and Environment, Heritage Institute of Technology, Chowbaga Road, Anandapur, Kolkata 700107 (India); Misra, Ramprasad [Department of Physical Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032 (India)

    2014-06-01

    In this paper, we report the spectral signatures of photoinduced tautomerism of 4-methyl-2,6-dicarbomethoxyphenol (CMOH) in DMF–water mixtures with varying compositions. Excited state intramolecular proton transfer (ESIPT) reaction of CMOH has been observed in bulk DMF, indicated by dual fluorescence from its normal and tautomeric forms while only a single emission peak is observed in water from its anionic species. Binary mixture of a polar aprotic (DMF) and a polar protic (water) solvent gives rise to a competition between intramolecular and intermolecular hydrogen bonding (with media) processes of the probe. This competition is found to be largely dependent on the proton affinity of the media and also on the excitation energy. Solvent separated ion pair and intermolecularly H-bonded CMOH–Solvent complex have been detected in the excited state at specific solvent compositions that are converted to the anionic form due to the change in excitation wavelengths. The formation of hydrogen bonded 1:1 molecular clusters of different rotamers of CMOH with DMF and water in the ground state has been investigated using quantum chemical calculations. A combined experimental and theoretical analysis indicates that the HOMO to LUMO transitions dictate the electronic absorption profiles of the CMOH–DMF and CMOH–water clusters. These findings are expected to shed light on the mechanism of acid–base reactions of several hydrogen bonded systems that are part of many biologically relevant processes. -- Highlights: •Photoinduced tautomerization of CMOH has been studied in DMF–water mixture. •CMOH forms 1:1 molecular clusters with DMF and water. •The competition between intra- and intermolecular hydrogen bonding is revealed. •HOMO to LUMO transition dictates the absorption spectra of CMOH in DMF and water.

  14. Energy-dependent interactions in few-body systems

    International Nuclear Information System (INIS)

    Energy-dependent interactions in few-body systems are discussed. A class of multichannel few-body scattering models which are characterized by the simultaneous presence of and communication between two different types of channels. First, usual two- and three-particle scattering channels (external ones), hamiltonians for which have ordinary spectral properties. Second, the internal channels, hamiltonians for which have only a point spectrum. Faddeev equations for external and internal channels are discussed

  15. Nucleus-nucleus interactions in the transition energy regime

    International Nuclear Information System (INIS)

    There are at least two ways for studying large interactions in nucleus-nucleus collisions. One way is to use the method of angular correlations between fission fragments. The aim of the experiments presented here was to make a survey on the role of the various experimental parameters. In that respect three targets have been studied and different projectiles and bombarding energies have been used. Results are presented and discussed

  16. Interaction of low-energy neutrons with tellurium isotopes

    International Nuclear Information System (INIS)

    Total neutron cross sections of sup(122,124,126,128,130)Te isotopes are obtained for 0.41-2.16 MeV energy range. These data are analyzed on the basis of different variants of the generalized optical model. The optical potential real part had the radial Woods-Saxon dependence. The potential imaginary part was taken in the form of the Woods-Saxon form-factor derivative and spinorbit interaction - in the Thomas form

  17. Electrochemical study of the intermolecular electron transfer to Pseudomonas aeruginosa cytochrome cd1 nitrite reductase

    International Nuclear Information System (INIS)

    The kinetics of electron transfer reaction between cytochrome cd1 nitrite reductase (NiR) from Pseudomonas aeruginosa and various physiological/non physiological redox partners was investigated using cyclic voltammetry at the pyrolytic graphite electrode. While NiR did not exchange electron with the electrode, cytochrome c551 and azurin, both from Ps. aeruginosa, behaved as fast electrochemical systems. The intermolecular electron transfers between NiR and cytochrome c551 or azurin as electron shuttles, in the presence of nitrite, were studied. Second order rate constants of 2x106 and 1.4x105 M-1 s-1 are calculated for cytochrome c551 and azurin, respectively. The dependence of the second-order rate constant on ionic strength and pH is discussed. Finally, the effect of the global charge of the electron shuttles was explored using differently charged species (proteins or small ions). The experimental results suggest involvement of polar interactions as well as of hydrophobic contacts in the protein recognition prior to the intermolecular electron transfer. As the cross-reaction between Ps. nautica cytochrome c552 and Ps. aeruginosa NiR was shown to be as efficient as the catalytic reaction involving the physiological partners, it is concluded to a 'pseudo-specificity' in the recognition between NiR and the electron donor

  18. Intermolecular complexation and phase separation in aqueous solutions of oppositely charged biopolymers.

    Science.gov (United States)

    Singh, S Santinath; Siddhanta, A K; Meena, Ramavatar; Prasad, Kamalesh; Bandyopadhyay, S; Bohidar, H B

    2007-07-01

    Turbidity measurements performed at 450nm were used to follow the process of complex formation, and phase separation in gelatin-agar aqueous solutions. Acid (Type-A) and alkali (Type-B) processed gelatin (polyampholyte) and agar (anionic polyelectrolyte) solutions, both having concentration of 0.1% (w/v) were mixed in various proportions, and the mixture was titrated (with 0.01 M HCl or NaOH) to initiate associative complexation that led to coacervation. The titration profiles clearly established observable transitions in terms of the solution pH corresponding to the first occurrence of turbidity (pH(C), formation of soluble complexes), and a point of turbidity maximum (pH(phi), formation of insoluble complexes). Decreasing the pH beyond pH(phi) drove the system towards precipitation. The values of pH(C) and pH(phi) characterized the initiation of the formation of intermolecular charge neutralized soluble aggregates, and the subsequent formation of microscopic coacervate droplets. These aggregates were characterized by dynamic light scattering. It was found that Type-A and -B gelatin samples formed soluble intermolecular complexes (and coacervates) with agar molecules through electrostatic and patch-binding interactions, respectively. PMID:17367849

  19. Pressure and temperature effects on intermolecular vibrational dynamics of ionic liquids.

    Science.gov (United States)

    Penna, Tatiana C; Faria, Luiz F O; Matos, Jivaldo R; Ribeiro, Mauro C C

    2013-03-14

    Low frequency Raman spectra of ionic liquids have been obtained as a function of pressure up to ca. 4.0 GPa at room temperature and as a function of temperature along the supercooled liquid and glassy state at atmospheric pressure. Intermolecular vibrations are observed at ~20, ~70, and ~100 cm(-1) at room temperature in ionic liquids based on 1-alkyl-3-methylimidazolium cations. The component at ~100 cm(-1) is assigned to librational motion of the imidazolium ring because it is absent in non-aromatic ionic liquids. There is a correspondence between the position of intermolecular vibrational modes in the normal liquid state and the spectral features that the Raman spectra exhibit after partial crystallization of samples at low temperatures or high pressures. The pressure-induced frequency shift of the librational mode is larger than the other two components that exhibit similar frequency shifts. The lowest frequency vibration observed in a glassy state corresponds to the boson peak observed in light and neutron scattering spectra of glass-formers. The frequency of the boson peak is not dependent on the length scale of polar?non-polar heterogeneity of ionic liquids, it depends instead on the strength of anion-cation interaction. As long as the boson peak is assigned to a mixing between localized modes and transverse acoustic excitations of high wavevectors, it is proposed that the other component observed in Raman spectra of ionic liquids has a partial character of longitudinal acoustic excitations. PMID:23514505

  20. Intra- and intermolecular forces dependent main chain conformations of esters of ?,?-dehydroamino acids

    Science.gov (United States)

    Siod?ak, Dawid; Bujak, Maciej; Sta?, Monika

    2013-09-01

    Esters of dehydroamino acids occur in nature. To investigate their conformational properties, the low-temperature structures of Ac-?Ala-OMe, Ac-?Val-OMe, Z-(Z)-?Abu-OMe, and Z-(Z)-?Abu-NHMe were studied by single-crystal X-ray diffraction. The ?Ala ester prefers the fully extended conformation C5. Both the ?Val and (Z)-?Abu esters assume the conformation ?, whereas the amide analogue of the latter prefers the conformation ?. For the conformations found, DFT calculations using B3LYP/6-311++G(d,p) with the SCRF-PCM and M062X/6-311++G(d,p) with the SCRF-SMD method were applied to mimicking chloroform and water environment. The tendency of the ?Val and (Z)-?Abu esters towards the conformation ?, and their amide analogues towards the conformation ?, with increase of the polarity of environment was found. The analysis of both intra- and intermolecular interactions including hydrogen bonds, carbonyl dipole attraction, and ?-electron conjugation, enabled to understand and elucidate the conformational preferences of studied compounds. The studies show how the molecular structure, and in consequence, the conformation adopted by molecules is influenced by the different intra- and intermolecular forces.

  1. Analysis of Intermolecular Coordinate Contributions to Third-order Ultrafast Spectroscopy of Liquids in the Harmonic Oscillator

    Energy Technology Data Exchange (ETDEWEB)

    Thantu, Napoleon; McMorrow, D.; Melinger, J. S.; Kleiman, V.; Lotshaw, W. T.

    2001-07-01

    The apparently-multicomponent subpicosecond intermolecular dynamics of carbon disulfide liquid are addressed in a unified manner in terms of an inhomogeneously broadened quantum mechanical harmonic oscillator model for a single vibrational coordinate. For an inhomogeneously broadened (Gaussian) distribution of oscillators, the model predicts naturally the bimodal character of the subpicosecond intermolecular dynamics of carbon disulfide liquid, and also the spectral evolution effects (spectral narrowing and saturation) that are observed for solutions of carbon disulfide in weakly interacting alkane solvents. The unique dynamical signature of these low-frequency vibrational coordinates is determined largely by the physical constraints on the coordinates (near equality of oscillator frequency, dephasing frequency, and inhomogeneous bandwidth), such that constructive and destructive interference effects play a dominant role in shaping the experimental observable.

  2. Rovibrational matrix elements of the multipole moments and of the polarizability of the H2 molecule in the solid phase: Effect of intermolecular potential

    Indian Academy of Sciences (India)

    Adya Prasad Mishra; T K Balasubramanian

    2001-10-01

    Rovibrational matrix elements of the multipole moments $Q_{\\ell}$ up to rank 10 and of the linear polarizability of the H2 molecule in the condensed phase have been computed taking into account the effect of the intermolecular potential. Comparison with gas phase matrix elements shows that the effect of solid state interactions is marginal.

  3. Spectroscopic and computational studies of a Ru(II) terpyridine complex: the importance of weak intermolecular forces to photophysical properties.

    Science.gov (United States)

    Garino, Claudio; Gobetto, Roberto; Nervi, Carlo; Salassa, Luca; Rosenberg, Edward; Ross, J B Alexander; Chu, Xi; Hardcastle, Kenneth I; Sabatini, Cristiana

    2007-10-15

    The complex [Ru(tpy)(CO)(2)TFA]+[PF(6)]- (where tpy = 2,2':6',2' '-terpyridine and TFA = CF(3)CO(2)-) (1) has been synthesized and fully characterized spectroscopically. The X-ray structure of the complex has been determined. The photopysical properties of the ruthenium complex and the free ligand tpy have been investigated at room temperature and at 77 K in acetonitrile solution and in the solid state. Their electronic spectra are highly influenced by intermolecular stacking interactions, both in solution and in the solid state. Density functional theory (DFT) and time-dependent DFT (TDDFT) calculations have been performed to characterize the electronic structure and the excited states of [Ru(tpy)(CO)(2)TFA]+[PF(6)]- and tpy. TDDFT calculations on three different conformations of free ligand have been performed as well. Absorption and emission spectra of tpy have been studied at different temperatures and concentrations in order to have a better understanding of this ruthenium derivative's properties. The absorption spectrum of 1 is characterized by metal-perturbed ligand-centered (LC) bands in the UV region. No metal-to-ligand charge transfer (MLCT) bands are observed in the visible for the complex. Only at high concentrations (10(-4) M) does a very weak band appear at 470 nm. At 77 K and low concentrations, solutions of 1 exhibit a major 3LC emission band centered at 468 nm (21.4 x 10(-3) cm(-1)). When the concentration of the complex is increased, an unstructured narrow emission at 603 nm (16.6 x 10(-3) cm(-1)), with a lifetime of 10 micros, dominates the emission spectrum in glassy acetonitrile. This emission originates from a pi-pi stacked dimeric (or oligomeric) species. TDDFT calculations performed on a tail-to-tail dimer structure, similar to that seen in the solid state, ascribe the transition to a triplet excited state, where intermolecular metal (d) --> ligand (pi*, polypyridine) charge transfer occurs. A good estimate of the transition energy is also obtained (623 nm, 1.94 eV). PMID:17845034

  4. Microscopic positive-energy potential based on Gogny interaction

    CERN Document Server

    Blanchon, G; Arellano, H F; Mau, N Vinh

    2014-01-01

    We present nucleon elastic scattering calculation based on Green's function formalism in the Random-Phase Approximation. For the first time, the Gogny effective interaction is used consistently throughout the whole calculation to account for the complex, non-local and energy-dependent optical potential. Effects of intermediate single-particle resonances are included and found to play a crucial role in the account for measured reaction cross section. Double counting of the particle-hole second-order contribution is carefully addressed. The resulting integro-differential Schr\\"odinger equation for the scattering process is solved without localization procedures. The method is applied to neutron and proton elastic scattering from $^{40}$Ca. A successful account for differential and integral cross sections, including analyzing powers, is obtained for incident energies up to 30 MeV. Discrepancies at higher energies are related to much too high volume integral of the real potential for large partial waves. Moreover...

  5. Importance of the Donor:Fullerene intermolecular arrangement for high-efficiency organic photovoltaics

    KAUST Repository

    Graham, Kenneth

    2014-07-09

    The performance of organic photovoltaic (OPV) material systems are hypothesized to depend strongly on the intermolecular arrangements at the donor:fullerene interfaces. A review of some of the most efficient polymers utilized in polymer:fullerene PV devices, combined with an analysis of reported polymer donor materials wherein the same conjugated backbone was used with varying alkyl substituents, supports this hypothesis. Specifically, the literature shows that higher-performing donor-acceptor type polymers generally have acceptor moieties that are sterically accessible for interactions with the fullerene derivative, whereas the corresponding donor moieties tend to have branched alkyl substituents that sterically hinder interactions with the fullerene. To further explore the idea that the most beneficial polymer:fullerene arrangement involves the fullerene docking with the acceptor moiety, a family of benzo[1,2-b:4,5-b]dithiophene-thieno[3,4-c]pyrrole-4,6-dione polymers (PBDTTPD derivatives) was synthesized and tested in a variety of PV device types with vastly different aggregation states of the polymer. In agreement with our hypothesis, the PBDTTPD derivative with a more sterically accessible acceptor moiety and a more sterically hindered donor moiety shows the highest performance in bulk-heterojunction, bilayer, and low-polymer concentration PV devices where fullerene derivatives serve as the electron-accepting materials. Furthermore, external quantum efficiency measurements of the charge-transfer state and solid-state two-dimensional (2D) 13C{1H} heteronuclear correlation (HETCOR) NMR analyses support that a specific polymer:fullerene arrangement is present for the highest performing PBDTTPD derivative, in which the fullerene is in closer proximity to the acceptor moiety of the polymer. This work demonstrates that the polymer:fullerene arrangement and resulting intermolecular interactions may be key factors in determining the performance of OPV material systems. © 2014 American Chemical Society.

  6. AIC, BIC, Bayesian evidence against the interacting dark energy model

    Science.gov (United States)

    Szyd?owski, Marek; Krawiec, Adam; Kurek, Aleksandra; Kamionka, Micha?

    2015-01-01

    Recent astronomical observations have indicated that the Universe is in a phase of accelerated expansion. While there are many cosmological models which try to explain this phenomenon, we focus on the interacting CDM model where an interaction between the dark energy and dark matter sectors takes place. This model is compared to its simpler alternative—the CDM model. To choose between these models the likelihood ratio test was applied as well as the model comparison methods (employing Occam's principle): the Akaike information criterion (AIC), the Bayesian information criterion (BIC) and the Bayesian evidence. Using the current astronomical data: type Ia supernova (Union2.1), , baryon acoustic oscillation, the Alcock-Paczynski test, and the cosmic microwave background data, we evaluated both models. The analyses based on the AIC indicated that there is less support for the interacting CDM model when compared to the CDM model, while those based on the BIC indicated that there is strong evidence against it in favor of the CDM model. Given the weak or almost non-existing support for the interacting CDM model and bearing in mind Occam's razor we are inclined to reject this model.

  7. AIC, BIC, Bayesian evidence against the interacting dark energy model

    International Nuclear Information System (INIS)

    Recent astronomical observations have indicated that the Universe is in a phase of accelerated expansion. While there are many cosmological models which try to explain this phenomenon, we focus on the interacting ?CDM model where an interaction between the dark energy and dark matter sectors takes place. This model is compared to its simpler alternative - the ?CDM model. To choose between these models the likelihood ratio test was applied as well as the model comparison methods (employing Occam's principle): the Akaike information criterion (AIC), the Bayesian information criterion (BIC) and the Bayesian evidence. Using the current astronomical data: type Ia supernova (Union2.1), h(z), baryon acoustic oscillation, the Alcock- Paczynski test, and the cosmic microwave background data, we evaluated both models. The analyses based on the AIC indicated that there is less support for the interacting ?CDM model when compared to the ?CDM model, while those based on the BIC indicated that there is strong evidence against it in favor of the ?CDM model. Given the weak or almost non-existing support for the interacting ?CDM model and bearing in mind Occam's razor we are inclined to reject this model. (orig.)

  8. AIC, BIC, Bayesian evidence against the interacting dark energy model

    Energy Technology Data Exchange (ETDEWEB)

    Szydlowski, Marek [Jagiellonian University, Astronomical Observatory, Krakow (Poland); Jagiellonian University, Mark Kac Complex Systems Research Centre, Krakow (Poland); Krawiec, Adam [Jagiellonian University, Institute of Economics, Finance and Management, Krakow (Poland); Jagiellonian University, Mark Kac Complex Systems Research Centre, Krakow (Poland); Kurek, Aleksandra [Jagiellonian University, Astronomical Observatory, Krakow (Poland); Kamionka, Michal [University of Wroclaw, Astronomical Institute, Wroclaw (Poland)

    2015-01-01

    Recent astronomical observations have indicated that the Universe is in a phase of accelerated expansion. While there are many cosmological models which try to explain this phenomenon, we focus on the interacting ?CDM model where an interaction between the dark energy and dark matter sectors takes place. This model is compared to its simpler alternative - the ?CDM model. To choose between these models the likelihood ratio test was applied as well as the model comparison methods (employing Occam's principle): the Akaike information criterion (AIC), the Bayesian information criterion (BIC) and the Bayesian evidence. Using the current astronomical data: type Ia supernova (Union2.1), h(z), baryon acoustic oscillation, the Alcock- Paczynski test, and the cosmic microwave background data, we evaluated both models. The analyses based on the AIC indicated that there is less support for the interacting ?CDM model when compared to the ?CDM model, while those based on the BIC indicated that there is strong evidence against it in favor of the ?CDM model. Given the weak or almost non-existing support for the interacting ?CDM model and bearing in mind Occam's razor we are inclined to reject this model. (orig.)

  9. Cosmological evolution of interacting dark energy in Lorentz violation

    CERN Document Server

    Zen, Freddy P; Gunara, Bobby E; Triyanta,; Purwanto, A

    2008-01-01

    The cosmological evolution of an interacting scalar field model in which the scalar field has its interaction with dark matter, radiation, and baryon via Lorentz violation is investigated. We propose a model of interaction through the effective coupling parameter, $\\bar{\\beta}$, $Q_m = - \\dot{\\bar{\\beta}}\\rho_m/\\bar{\\beta}$. We apply the dynamical systems to study the linear dynamics of an interacting model and show that the dynamics is completely determined by only two parameters $\\lambda_1$ and $\\lambda_2$. We determine all critical points and study their stability. By choosing the values of $\\lambda_1$ and $\\lambda_2$, we show the numerical solution for different interesting cases. There exists the sequence of radiation, dark matter, and scalar field dark energy but the baryon is sub dominant. The model allows the possible of the universe in the phantom phase with the constant potential. We also find that the vacuum expectation value of the vector field determines the time variations in the gravitational c...

  10. AIC, BIC, Bayesian evidence against the interacting dark energy model

    International Nuclear Information System (INIS)

    Recent astronomical observations have indicated that the Universe is in a phase of accelerated expansion. While there are many cosmological models which try to explain this phenomenon, we focus on the interacting ?CDM model where an interaction between the dark energy and dark matter sectors takes place. This model is compared to its simpler alternative—the ?CDM model. To choose between these models the likelihood ratio test was applied as well as the model comparison methods (employing Occam’s principle): the Akaike information criterion (AIC), the Bayesian information criterion (BIC) and the Bayesian evidence. Using the current astronomical data: type Ia supernova (Union2.1), h(z), baryon acoustic oscillation, the Alcock–Paczynski test, and the cosmic microwave background data, we evaluated both models. The analyses based on the AIC indicated that there is less support for the interacting ?CDM model when compared to the ?CDM model, while those based on the BIC indicated that there is strong evidence against it in favor of the ?CDM model. Given the weak or almost non-existing support for the interacting ?CDM model and bearing in mind Occam’s razor we are inclined to reject this model

  11. On intermolecular dipolar coupling in two strongly polar liquids: dimethyl sulfoxide and acetonitrile.

    Science.gov (United States)

    Jadzyn, Jan; Swiergiel, Jolanta

    2011-05-26

    The paper presents the results of studies of the electric and dielectric properties of dimethyl sulfoxide (DMSO) and acetonitrile (ACN), two strongly polar liquids composed of the molecules of the same dipole moment value (? ? 4 D) but of a quite different static dielectric permittivity (?(S)(DMSO) > ?(S)(ACN)). It was shown that the activation energies for both the dc ionic conductivity (?(DC)) and the viscosity (?) are two times higher for DMSO than for ACN; however, for both of the liquids, the temperature dependence of the product ?(DC)? is quite close to the prediction of the Stokes-Einstein relation. The dielectric results are interpreted in terms of the intermolecular dipole-dipole coupling. An exceptional behavior of DMSO most certainly results from its "monomolecularity", i.e., from the lack of the dipolar coupling in that strongly polar liquid. The effect is a consequence of a very specific structure of the DMSO molecule where its rotational dynamics makes the intermolecular dipole-dipole coupling very unfavorable, in contrast to the ACN molecules. PMID:21528869

  12. Structurally Defined Molecular Hypervalent Iodine Catalysts for Intermolecular Enantioselective Reactions.

    Science.gov (United States)

    Haubenreisser, Stefan; Wöste, Thorsten H; Martínez, Claudio; Ishihara, Kazuaki; Muñiz, Kilian

    2016-01-01

    Molecular structures of the most prominent chiral non-racemic hypervalent iodine(III) reagents to date have been elucidated for the first time. The formation of a chirally induced supramolecular scaffold based on a selective hydrogen-bonding arrangement provides an explanation for the consistently high asymmetric induction with these reagents. As an exploratory example, their scope as chiral catalysts was extended to the enantioselective dioxygenation of alkenes. A series of terminal styrenes are converted into the corresponding vicinal diacetoxylation products under mild conditions and provide the proof of principle for a truly intermolecular asymmetric alkene oxidation under iodine(I/III) catalysis. PMID:26596513

  13. Microscopic positive-energy potential based on the Gogny interaction

    Science.gov (United States)

    Blanchon, G.; Dupuis, M.; Arellano, H. F.; Vinh Mau, N.

    2015-01-01

    We present a nucleon elastic scattering calculation based on Green's function formalism in the random-phase approximation. For the first time, the finite-range Gogny effective interaction is used consistently throughout the whole calculation to account for the complex, nonlocal, and energy-dependent optical potential. Effects of intermediate single-particle resonances are included and found to play a crucial role in the account for measured reaction cross sections. Double counting of the particle-hole second-order contribution is carefully addressed. The resulting integro-differential Schrödinger equation for the scattering process is solved without localization procedures. The method is applied to neutron and proton elastic scattering from 40Ca. A successful account for differential and integral cross sections, including analyzing powers, is obtained for incident energies up to 30 MeV. Discrepancies at higher energies are related to a much-too-high volume integral of the real potential for large partial waves. This work opens the way to simultaneously assess effective interactions suitable for both nuclear structure and reactions.

  14. Low-z test for interacting dark energy

    Science.gov (United States)

    Gonçalves, R. S.; Carvalho, G. C.; Alcaniz, J. S.

    2015-12-01

    A nonminimal coupling between the dark matter and dark energy components may offer a way of solving the so-called coincidence problem. In this paper we propose a low-z test for such hypothesis using measurements of the gas mass fraction fgas in relaxed and massive galaxy clusters. The test applies to any model whose dilution of dark matter is modified with respect to the standard a-3 scaling, as usual in interacting models, where a is the cosmological scale factor. We apply the test to current fgas data and perform Monte Carlo simulations to forecast the necessary improvements in number and accuracy of upcoming observations to detect a possible interaction in the cosmological dark sector. Our results show that improvements in the present relative error ?gas/fgas are more effective to achieve this goal than an increase in the size of the fgas sample.

  15. Experimental Summary: Very High Energy Cosmic Rays and their Interactions

    Directory of Open Access Journals (Sweden)

    Kampert Karl-Heinz

    2013-06-01

    Full Text Available The XVII International Symposium on Very High Energy Cosmic Ray Interactions, held in August of 2012 in Berlin, was the first one in the history of the Symposium,where a plethora of high precision LHC data with relevance for cosmic ray physics was presented. This report aims at giving a brief summary of those measurements andit discusses their relevance for observations of high energy cosmic rays. Enormous progress has been made also in air shower observations and in direct measurements of cosmic rays, exhibiting many more structure in the cosmic ray energy spectrum than just a simple power law with a knee and an ankle. At the highest energy, the flux suppression may not be dominated by the GZK-effect but by the limiting energy of a nearby source or source population. New projects and application of new technologies promise further advances also in the near future. We shall discuss the experimental and theoretical progress in the field and its prospects for coming years.

  16. Observational constraints on a holographic, interacting dark energy model

    CERN Document Server

    Durán, Iván; Zimdahl, Winfried

    2010-01-01

    We constrain an interacting, holographic dark energy model, first proposed by two of us in [1], with observational data from supernovae, CMB shift, baryon acoustic oscillations, x-rays, and the Hubble rate. The growth function for this model is also studied. The model fits the data reasonably well but still the conventional $\\Lambda$CDM model fares better. Nevertheless, the holographic model greatly alleviates the coincidence problem and shows compatibility at $1\\sigma$ confidence level with the age of the old quasar APM 08279+5255.

  17. Observational constraints on a holographic, interacting dark energy model

    International Nuclear Information System (INIS)

    We constrain an interacting, holographic dark energy model, first proposed by two of us in [1], with observational data from supernovae, CMB shift, baryon acoustic oscillations, x-rays, and the Hubble rate. The growth function for this model is also studied. The model fits the data reasonably well but still the conventional ?CDM model fares better. Nevertheless, the holographic model greatly alleviates the coincidence problem and shows compatibility at 1? confidence level with the age of the old quasar APM 08279+5255

  18. Interacting ghost dark energy models with variable G and ?

    International Nuclear Information System (INIS)

    In this paper we consider several phenomenological models of variable ?. Model of a flat Universe with variable ? and G is accepted. It is well known, that varying G and ? gives rise to modified field equations and modified conservation laws, which gives rise to many different manipulations and assumptions in literature. We will consider two component fluid, which parameters will enter to ?. Interaction between fluids with energy densities ?1 and ?2 assumed as Q = 3Hb(?1+?2). We have numerical analyze of important cosmological parameters like EoS parameter of the composed fluid and deceleration parameter q of the model

  19. Towards first-principles based modeling of poly-3-alkylthiophenes: The nature of interactions in 2,2´-bithiophene dimer.

    Czech Academy of Sciences Publication Activity Database

    Sitkiewicz, S. P.; Mikolajczyk, M. M.; Toman, Petr; Zalesny, R.; Bartkowiak, W.

    2013-01-01

    Ro?. 566, 12 April (2013), s. 67-70. ISSN 0009-2614 R&D Projects: GA ?R(CZ) GAP205/10/2280 Grant ostatní: AV ?R(CZ) M200501204 Institutional research plan: CEZ:AV0Z40500505 Institutional support: RVO:61389013 Keywords : poly-3-alkylthiophenes * intermolecular interactions * interaction energy decomposition Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 1.991, year: 2013

  20. Influence of intermolecular contacts on the structure of recombinant prolidase from Thermococcus sibiricus.

    Science.gov (United States)

    Trofimov, A A; Slutskaya, E A; Polyakov, K M; Dorovatovskii, P V; Gumerov, V M; Popov, V O

    2012-11-01

    Prolidases are peptidases that are specific for dipeptides with proline as the second residue. The structure of recombinant prolidase from the hyperthermophilic archaeon Thermococcus sibiricus (Tsprol) was determined at 2.6?Å resolution. The homodimer of Tsprol is characterized by a complete lack of interactions between the N- and C-terminal domains of the two subunits and hence can be considered to be the most open structure when compared with previously structurally studied prolidases. This structure exists owing to intermolecular coordination bonds between cadmium ions derived from the crystallization solution and histidine residues of a His tag and aspartate and glutamate residues, which link the dimers to each other. This linking leads to the formation of a crystal with a loose packing of protein molecules and low resistance to mechanical influence and temperature increase. PMID:23143231

  1. Influence of intermolecular contacts on the structure of recombinant prolidase from Thermococcus sibiricus

    International Nuclear Information System (INIS)

    The structure of recombinant prolidase from the hyperthermophilic archaeon Thermococcus sibiricus (Tsprol) was determined at 2.6 Å resolution. Prolidases are peptidases that are specific for dipeptides with proline as the second residue. The structure of recombinant prolidase from the hyperthermophilic archaeon Thermococcus sibiricus (Tsprol) was determined at 2.6 Å resolution. The homodimer of Tsprol is characterized by a complete lack of interactions between the N- and C-terminal domains of the two subunits and hence can be considered to be the most open structure when compared with previously structurally studied prolidases. This structure exists owing to intermolecular coordination bonds between cadmium ions derived from the crystallization solution and histidine residues of a His tag and aspartate and glutamate residues, which link the dimers to each other. This linking leads to the formation of a crystal with a loose packing of protein molecules and low resistance to mechanical influence and temperature increase

  2. Screening effects in the ultra-high energy neutrino interactions

    International Nuclear Information System (INIS)

    We study possible saturation effects in the total crosssections describing the interaction of ultra-high energy neutrinos with nucleons. This analysis is performed within two approaches, i.e., within the Golec-Biernat-Wuesthoff saturation model and within the scheme unifying the DGLAP and BFKL dynamics incorporating non-linear screening effects which follow from the Balitzki-Kovchegov equation. The structure functions in both approaches are constrained by HERA data. It is found that screening effects affect the extrapolation of the neutrino-nucleon total cross-sections to ultra-high neutrino energies E? and reduce their magnitude by a factor equal to about 2 at E??1012 GeV. This reduction becomes amplified by nuclear shadowing in the case of the neutrino-nucleus cross-sections and an approximate estimate of this effect is performed. (orig.)

  3. High-energy interactions in the region of extreme multiplicities

    International Nuclear Information System (INIS)

    Hadron and nuclear interactions at high energies in the region of extreme multiplicities (much higher than mean multiplicities) are reviewed. Collective phenomena such as Bose-Einstein condensation, Cherenkov gluon radiation, clustering, and an excess yield of soft photons may manifest themselves in this region. The phenomenological gluon-dominance model developed for describing extreme multiplicities predicts the restrictions on their values and the type of hadronization mechanism and makes it possible to estimate thee size of the hadronization region. The status of the research within the Thermalization project at the U-70 accelerator of the Institute for High Energy Physics (IHEP, Protvino) is reported, and information about searches for new collective phenomena and about studies of known ones in the region of extreme multiplicities is given.

  4. NUCLEAR INTERACTIONS OF HIGH ENERGY PROTONS IN NUCLEAR EMULSION

    Energy Technology Data Exchange (ETDEWEB)

    Fujioka, G.; Fukushima, H.; Hayashino, T.; Homma, Y.; Horiguchi, T.; Igarashi, M.; Inayoshi, A.; Miyagaki, M.; Noguchi, Y.; Tsuzuki, Y.; Yamasaki, H.; /Kobe U. /Osaka City U. /Osaka Prefecture U. /Kinki U., Osaka /Okayama U. /Wakayama Medical Coll.

    1977-01-01

    Inelastic nuclear interactions in nuclear emulsions exposed to 200, 300 and 400 GeV proton beams are investigated. Dependence of inelastic cross sections on A is discussed. It seems to have been generally accepted that N{sub h}-distribution has little dependence on incident energies, but it is shown that the fraction of events without heavily ionizing tracks (N{sub h}=0) increases appreciably with increasing primary energies. Classifying events by number of heavily ionizing particles, the pseudo-rapidity distributions are studied, and the number of shower particles at higher rapidity region is less in central collisions with heavy nuclei compared to that in collisions with small N{sub h}.

  5. [Noncovalent cation-? interactions--their role in nature].

    Science.gov (United States)

    Fink, Krzysztof; Boraty?ski, Janusz

    2014-01-01

    Non-covalent interactions play an extremely important role in organisms. The main non-covalent interactions in nature are: ion-ion interactions, dipole-dipole interactions, hydrogen bonds, and van der Waals interactions. A new kind of intermolecular interactions--cation-? interactions--is gaining increasing attention. These interactions occur between a cation and a ? system. The main contributors to cation-? interactions are electrostatic, polarization and, to a lesser extent, dispersion interactions. At first, cation-? interactions were studied in a gas phase, with metal cation-aromatic system complexes. The characteristics of these complexes are as follows: an increase of cation atomic number leads to a decrease of interaction energy, and an increase of cation charge leads to an increase of interaction energy. Aromatic amino acids bind with metal cations mainly through interactions with their main chain. Nevertheless, cation-? interaction with a hydrophobic side chain significantly enhances binding energy. In water solutions most cations preferentially interact with water molecules rather than aromatic systems. Cation-? interactions occur in environments with lower accessibility to a polar solvent. Cation-? interactions can have a stabilizing role on the secondary, tertiary and quaternary structure of proteins. These interactions play an important role in substrate or ligand binding sites in many proteins, which should be taken into consideration when the screening of effective inhibitors for these proteins is carried out. Cation-? interactions are abundant and play an important role in many biological processes. PMID:25380210

  6. A Field Theory Model for Dark Matter and Dark Energy in Interaction

    CERN Document Server

    Micheletti, Sandro; Wang, Bin

    2009-01-01

    We propose a field theory model for dark energy and dark matter in interaction. Comparing the classical solutions of the field equations with the observations of the CMB shift parameter, BAO, lookback time and Gold supernovae sample, we observe a possible interaction between dark sectors with energy decay from dark energy into dark matter. The observed interaction provides an alleviation to the coincidence problem.

  7. Weak-scale string theories and ultrahigh energy neutrino interactions

    International Nuclear Information System (INIS)

    We discuss if ultrahigh energy (UHE) neutrinos can be responsible for the observed vertical extensive air showers with energy ? 1020 eV. After briefly reviewing the proposal that the decay products from UHE neutrinos annihilations on relic neutrinos are the observed UHE primaries, we concentrate on the suggestion that UHE neutrinos can acquire cross-sections approaching hadronic size if the string scale is as low as ? 10 TeV. In this case, the vertical air showers observed with energies above the Greisen-Zatsepin-Kuzmin cutoff at E ? 6 · 1019 eV could be initiated directly by neutrinos which are the only known primaries able to travel long distances unimpeded. We review the calculation of the neutrino-nucleon cross-section ?KKN? due to the exchange of Kaluza-Klein excitations of the graviton in a field theoretical framework and discuss the issue of unitarity. We find that ?KKN? and the transferred energy per interaction are too small to explain vertical showers even in the most optimistic scenario

  8. Resonant Electromagnetic Interaction in Low Energy Nuclear Reactions

    Science.gov (United States)

    Chubb, Scott

    2008-03-01

    Basic ideas about how resonant electromagnetic interaction (EMI) can take place in finite solids are reviewed. These ideas not only provide a basis for conventional, electron energy band theory (which explains charge and heat transport in solids), but they also explain how through finite size effects, it is possible to create many of the kinds of effects envisioned by Giuliano Preparata. The underlying formalism predicts that the orientation of the external fields in the SPAWAR protocolootnotetextKrivit, Steven B., New Energy Times, 2007, issue 21, item 10. http://newenergytimes.com/news/2007/NET21.htm^,ootnotetextSzpak, S.; Mosier-Boss, P.A.; Gordon, F.E. Further evidence of nuclear reactions in the Pd lattice: emission of charged particles. Naturwissenschaften 94,511(2007)..has direct bearing on the emission of high-energy particles. Resonant EMI also implies that nano-scale solids, of a particular size, provide an optimal environment for initiating Low Energy Nuclear Reactions (LENR) in the PdD system.

  9. Low energy constraints on electroweak vector boson self-interactions

    International Nuclear Information System (INIS)

    Agreements between electroweak precision experiments and the predictions of the Standard Model at the quantum level may imply nontrivial constraints on weak boson self-interactions. I critically examine the universality of the observed electroweak couplings and find that it holds to within 0.2 to 0.5% accuracy, which strongly supports the hypothesis of local gauge symmetry underlying weak-boson interactions. We then assume that non-standard weak boson interactions are characterized by a gauge invariant effective Lagrangian with non-renormalizable higher-dimensional operators. Twelve such operators made of electroweak bosons are obtained in the lowest nontrivial dimension in both the linear and non-linear realization of the symmetry breaking sector. Only a subset of these operators (four in the linear and three in the non-linear Lagrangian) are constrained by the present precision experiments. Although educated order-of-magnitude estimates for the remaining operator terms are possible, a low-energy constraints based on such estimates are by no means substitutes for direct measurements at LEP2 and beyond. Finally, the question of whether there already exists quantitative evidence for the standard weak-boson self-couplings in electroweak quantum corrections is critically examined. copyright 1995 American Institute of Physics

  10. Saturation model for two-photon interactions at high energies

    CERN Document Server

    Timneanu, N; Motyka, L; 10.1007/s100520200893

    2002-01-01

    We formulate and analyse a saturation model for the total gamma gamma and gamma* gamma* cross-sections and for the real photon structure function F_2^gamma(x,Q^2). The model is based on a picture in which the gamma* gamma* total cross-section for arbitrary photon virtualities is driven by the interaction of colour dipoles, into which the virtual photons fluctuate. The cross-section describing this interaction is assumed to satisfy the saturation property with the saturation radius taken from the Golec-Biernat and Wusthoff analysis of the gamma* p interaction at HERA. The model is supplemented by the QPM and non-pomeron reggeon contributions. The model gives a very good description of the data on the gamma gamma total cross-section, on the photon structure function F_2^gamma(x,Q^2) at low x and on the gamma* gamma* cross-section extracted from LEP double tagged events. Production of heavy flavours in gamma gamma collisions is also studied. Predictions of the model for the very high energy range which will be p...

  11. Saturation model for two-photon interactions at high energies

    International Nuclear Information System (INIS)

    We formulate and analyse a saturation model for the total ?? and ?* ?* cross-sections and for the real photon structure function F2?(x,Q2). The model is based on a picture in which the ?* ?* total cross-section for arbitrary photon virtualities is driven by the interaction of colour dipoles into which the virtual photons fluctuate. The cross-section describing this interaction is assumed to satisfy the saturation property with the saturation radius taken from the Golec-Biernat and Wuesthoff analysis of the ?*p interaction at HERA. The model is supplemented by the QPM and non-pomeron reggeon contributions. The model gives a very good description of the data on the ?? total cross-section, on the photon structure function F2?(x,Q2) at low x and on the ?* ?* cross-section extracted from LEP double tagged events. The production of heavy flavours in ?? collisions is also studied. Predictions of the model for the very high energy range which will be probed at future linear colliders are given. (orig.)

  12. Search for Quarks in High-Energy Neutrino Interactions

    CERN Multimedia

    2002-01-01

    This experiment is a search for quarks produced in high energy neutrino interactions. Neutrino interactions take place in a 23-ton lead target and are recognized by one or more particles crossing the counter hodoscopes S1 and S2, together with the absence of an incident particle signal in the initial veto counter V^0.\\\\ \\\\ The lead is viewed by an avalanche chamber to measure the specific ionization of the charged secondaries produced in the @n-interaction with high accuracy even in jet-like events, and by a series of two pairs of scintillation counter hodoscopes (ST1, ST2). The latter provide time-of-flight measurements and dE/dx measurements for a fast analysis in low and medium multiplicity provide a trigger for the chamber. \\\\ \\\\ In order to reduce the background in the set-up, very low momentum particles (mainly due to cascading processes in the target) are separated out by a @= 1 T.m magnet placed behind the target. \\\\ \\\\ A system of wire chambers W1, W2, which register both the position and the time at...

  13. Inhomogeneous models of interacting dark matter and dark energy

    CERN Document Server

    Sussman, R A; Gonzalez, O M; Sussman, Roberto A; Quiros, Israel; Gonzalez, Osmel Martin

    2005-01-01

    We derive and analyze a class of spherically symmetric cosmological models whose source is an interactive mixture of inhomogeneous cold dark matter (DM) and a generic homogeneous dark energy (DE) fluid. If the DE fluid corresponds to a quintessense scalar field, the interaction term can be associated with a well motivated non--minimal coupling to the DM component. By constructing a suitable volume average of the DM component we obtain a Friedman evolution equation relating this average density with an average Hubble scalar, with the DE component playing the role of a repulsive and time-dependent $\\Lambda$ term. Once we select an ``equation of state'' linking the energy density ($\\mu$) and pressure ($p$) of the DE fluid, as well as a free function governing the radial dependence, the models become fully determinate and can be applied to known specific DE sources, such as quintessense scalar fields or tachyonic fluids. Considering the simple equation of state $p= (\\gamma-1) \\mu$ with $0\\leq\\gamma <2/3$, we s...

  14. Resonant Interaction, Approximate Symmetry, and Electromagnetic Interaction (EMI) in Low Energy Nuclear Reactions (LENR)

    Science.gov (United States)

    Chubb, Scott

    2007-03-01

    Only recently (talk by P.A. Mosier-Boss et al, in this session) has it become possible to trigger high energy particle emission and Excess Heat, on demand, in LENR involving PdD. Also, most nuclear physicists are bothered by the fact that the dominant reaction appears to be related to the least common deuteron(d) fusion reaction,d+d ->α+γ. A clear consensus about the underlying effect has also been illusive. One reason for this involves confusion about the approximate (SU2) symmetry: The fact that all d-d fusion reactions conserve isospin has been widely assumed to mean the dynamics is driven by the strong force interaction (SFI), NOT EMI. Thus, most nuclear physicists assume: 1. EMI is static; 2. Dominant reactions have smallest changes in incident kinetic energy (T); and (because of 2), d+d ->α+γ is suppressed. But this assumes a stronger form of SU2 symmetry than is present; d+d ->α+γ reactions are suppressed not because of large changes in T but because the interaction potential involves EMI, is dynamic (not static), the SFI is static, and because the two incident deuterons must have approximate Bose Exchange symmetry and vanishing spin. A generalization of this idea involves a resonant form of reaction, similar to the de-excitation of an atom. These and related (broken gauge) symmetry EMI effects on LENR are discussed.

  15. Spectral energy transfer of atmospheric gravity waves through sum and difference nonlinear interactions

    OpenAIRE

    Huang, K. M.; Liu, A.Z.; Zhang, S.D.; Yi, F.; Li, Z.

    2012-01-01

    Nonlinear interactions of gravity waves are studied with a two-dimensional, fully nonlinear model. The energy exchanges among resonant and near-resonant triads are examined in order to understand the spectral energy transfer through interactions. The results show that in both resonant and near-resonant interactions, the energy exchange between two high frequency waves is strong, but the energy transfer from large to small vertical scale waves is rather weak. This suggests that the energy casc...

  16. Combining climate and energy policies: synergies or antagonism? Modeling interactions with energy efficiency instruments

    International Nuclear Information System (INIS)

    In addition to the already present Climate and Energy package, the European Union (EU) plans to include a binding target to reduce energy consumption. We analyze the rationales the EU invokes to justify such an overlapping and develop a minimal common framework to study interactions arising from the combination of instruments reducing emissions, promoting renewable energy (RE) production and reducing energy demand through energy efficiency (EE) investments. We find that although all instruments tend to reduce GHG emissions and although a price on carbon tends also to give the right incentives for RE and EE, the combination of more than one instrument leads to significant antagonisms regarding major objectives of the policy package. The model allows to show in a single framework and to quantify the antagonistic effects of the joint promotion of RE and EE. We also show and quantify the effects of this joint promotion on ETS permit price, on wholesale market price and on energy production levels. (authors)

  17. Combining climate and energy policies: synergies or antagonism? Modeling interactions with energy efficiency instruments

    Energy Technology Data Exchange (ETDEWEB)

    Lecuyer, Oskar [EDF R and D - Efese, 1 av du General de Gaulle, 92141 Clamart (France)] [CIRED, 45 bis av de la Belle-Gabrielle, 94736 Nogent-sur-Marne (France); Bibas, Ruben [CIRED, 45 bis av de la Belle-Gabrielle, 94736 Nogent-sur-Marne (France)

    2012-01-15

    In addition to the already present Climate and Energy package, the European Union (EU) plans to include a binding target to reduce energy consumption. We analyze the rationales the EU invokes to justify such an overlapping and develop a minimal common framework to study interactions arising from the combination of instruments reducing emissions, promoting renewable energy (RE) production and reducing energy demand through energy efficiency (EE) investments. We find that although all instruments tend to reduce GHG emissions and although a price on carbon tends also to give the right incentives for RE and EE, the combination of more than one instrument leads to significant antagonisms regarding major objectives of the policy package. The model allows to show in a single framework and to quantify the antagonistic effects of the joint promotion of RE and EE. We also show and quantify the effects of this joint promotion on ETS permit price, on wholesale market price and on energy production levels. (authors)

  18. INTERACTION ENERGIES IN NON WATSON-CRICK PAIRS: AN AB INITIO STUDY OF G·U AND U·U PAIRS

    Scientific Electronic Library Online (English)

    SANDRA T, MADARIAGA; J.GUILLERMO, CONTRERAS; C.GLORIA, SEGUEL.

    2005-03-01

    Full Text Available Ab initio calculations at the MP2/6-31G** level have been carried out on the non-Watson-Crick nucleic acids pairs G·U and U·U to obtain the interaction energies and to see whether the derived values are comparable or not with the canonical G-C, A-T a [...] nd A-U pairs. Optimized geometries of the pairs show that the structural parameters of the isolated bases differ very little on pairing. The guanine -NH2 group does not participate in the hydrogen bonding formation and possesses a pyramidal structure; its intrinsic nonplanarity plays an important role in the out-of-plane intermolecular interactions. Thus, the G·U pair projects three hydrogen bonding acceptor sites, namely, N7(G), O6(G) and O4(U) to the RNA major groove. The interaction energy (DHºint) calculated for the G·U pair (-13.6 kcal/mol) is comparable to that determined for A-T (-13.0 kcal/mol), but considerable smaller than the experimental value reported for G-C (-21.0 kcal/mol). The U·U pair follows the trend that pairing between pyrimidines bases should have lower interacting energies than purine-pyrimidine pairs

  19. Effects of corotating interaction regions on Ulysses high energy particles

    International Nuclear Information System (INIS)

    We investigate the intensity variation of low energy (?6-23 MeV/N) heliospheric ions and of galactic protons (250-2200 MeV) observed by the Kiel Electron Telescope onboard the Ulysses spacecraft associated with Corotating Interaction Regions (CIR) from mid-1992 to end of June 1995. This period covers Ulysses' transit to high southern latitudes, the south polar pass, return to the solar equator and ascent to the north pole up to 70 deg. We find that the flux of high energy protons exhibits a periodicity of about 26 days with a relative intensity variation of 10%. At latitudes below ?50 deg. the recurrent variations of galactic protons are in coincidence with the passage of CIRs and enhancements of low energies protons and alpha particles which are accelerated at the shocks of the CIRs. The modulation of galactic protons is observed up to high southern latitudes, where the signatures of a CIR are no longer visible in plasma or magnetic field data. The periodicity does not depend on latitude and its phase apparently remains constant during Ulysses' pass over the south pole as well as through the solar equator

  20. Low energy charged particles interacting with amorphous solid water layers

    Energy Technology Data Exchange (ETDEWEB)

    Horowitz, Yonatan; Asscher, Micha [Institute of Chemistry, Hebrew University of Jerusalem, Edmund J. Safra Campus, Givat-Ram, Jerusalem 91904 (Israel)

    2012-04-07

    The interaction of charged particles with condensed water films has been studied extensively in recent years due to its importance in biological systems, ecology as well as interstellar processes. We have studied low energy electrons (3-25 eV) and positive argon ions (55 eV) charging effects on amorphous solid water (ASW) and ice films, 120-1080 ML thick, deposited on ruthenium single crystal under ultrahigh vacuum conditions. Charging the ASW films by both electrons and positive argon ions has been measured using a Kelvin probe for contact potential difference (CPD) detection and found to obey plate capacitor physics. The incoming electrons kinetic energy has defined the maximum measurable CPD values by retarding further impinging electrons. L-defects (shallow traps) are suggested to be populated by the penetrating electrons and stabilize them. Low energy electron transmission measurements (currents of 0.4-1.5 {mu}A) have shown that the maximal and stable CPD values were obtained only after a relatively slow change has been completed within the ASW structure. Once the film has been stabilized, the spontaneous discharge was measured over a period of several hours at 103 {+-} 2 K. Finally, UV laser photo-emission study of the charged films has suggested that the negative charges tend to reside primarily at the ASW-vacuum interface, in good agreement with the known behavior of charged water clusters.

  1. Heavy ion interactions in the TeV energy domain

    International Nuclear Information System (INIS)

    Heavy-ion interactions at 60 and 200 A GeV have been studied at the CERN SPS. The energy flow in the pseudo-rapidity region >2.4 is studied with two sampling calorimeters in the WA80 experiment. It is concluded that the nuclear geometry plays an important role for energy flow in nucleus-nucleus collisions at these energies. The laser system for the gain control of the sampling calorimeters is described as well. A new emulsion technique for accurate angular measurements in the pseudo-rapidity region >1.3 used in the EMU01 experiment is described. With this technique the pseudo-rapidity distributions of relativistic singly charged particles are studied. The conclusion is that the geometry together with the fluctuations in participating nucleons, break-up of strings and decay of resonances can describe the obtained results. The standard emulsion technique is used to study the target fragmentation in nucleus-nucleus collisions at 200 A GeV. It is found that a first order cascade correction alone is unable to explain the observed emulsion results on target related fragments. (author)

  2. Interaction of low-energy highly charged ions with matter

    International Nuclear Information System (INIS)

    The thesis presented herein deals with experimental studies of the interaction between highly charged ions and neutral matter at low collision energies. The energy range investigated is of great interest for the understanding of both charge exchange reactions between ions comprising the solar wind and various astrophysical gases, as well as the creation of near-surface nanostructures. Over the course of this thesis an experimental setup was constructed, capable of reducing the kinetic energy of incoming ions by two orders of magnitude and finally focussing the decelerated ion beam onto a solid or gaseous target. A coincidence method was employed for the simultaneous detection of photons emitted during the charge exchange process together with the corresponding projectile ions. In this manner, it was possible to separate reaction channels, whose superposition presumably propagated large uncertainties and systematic errors in previous measurements. This work has unveiled unexpectedly strong contributions of slow radiative decay channels and clear evidence of previously only postulated decay processes in charge exchange-induced X-ray spectra. (orig.)

  3. Intermolecular Coulombic Decay in Biology: The Initial Electron Detachment from FADH(-) in DNA Photolyases.

    Science.gov (United States)

    Harbach, Philipp H P; Schneider, Matthias; Faraji, Shirin; Dreuw, Andreas

    2013-03-21

    Intermolecular coulombic decay (ICD) is an efficient mechanism of low-energy electron generation in condensed phases and is discussed as their potential source in living cells, tissues, and materials. The first example of ICD as an operating mechanism in real biological systems, that is, in the DNA repair enzymes photolyases, is presented. Photolyase function involves light-induced electron detachment from a reduced flavin adenine dinucleotide (FADH(-)), followed by its transfer to the DNA-lesion triggering repair of covalently bound nucleobase dimers. Modern quantum chemical methods are employed to demonstrate that the transferred electron is efficiently generated via a resonant ICD process between the antenna pigment and the FADH(-) cofactors. PMID:26291360

  4. Interacting entropy-corrected agegraphic Chaplygin gas model of dark energy

    OpenAIRE

    Malekjani, M.; Khodam-Mohammadi, A.

    2010-01-01

    In this work, we consider the interacting agegraphic dark energy models with entropy correction terms due to loop quantum gravity. We study the correspondence between the Chaplygin gas energy density with the interacting entropy-corrected agegraphic dark energy models in non-flat FRW universe. We reconstruct the potentials and the dynamics of the interacting entropy-corrected agegraphic scalar field models. This model is also extended to the interacting entropy-corrected age...

  5. Intermolecular complexes of singly linked bisporphyrins with trinitrobenzene

    Science.gov (United States)

    Jeyakumar, D.; Krishnan, V.

    1992-12-01

    Several covalently linked bisporphyrin systems, free-base (H 2P---H 2P), hybrid bisporphyrins (Zn---H 2P) and Zn(II) dimers (ZnP---ZnP) and their 1:1 molecular complexes with sym 1,3,5-trinitrobenzene have been investigated by optical absorption and emission, and magnetic resonance spectroscopic methods. In these systems, two porphyrin units are linked singly through one of the meso aryl groups via ether linkages of variable length. The bisporphyrins cooperatively bind a molecule of a ?-acceptor; 1,3,5-trinitrobenzene (TNB). The binding constant values vary with interchromophore separation. Maximum binding is observed in the bisporphyrin bearing a two-ether covalent linkage. It is found that TNB quenches the fluorescence of the two porphyrine units in a selective manner. It is suggested that a critical distance between the two porphyrin units is necessary for the observance of maximum cooperative intermolecular binding with an acceptor.

  6. Effects of symmetry energy and momentum dependent interaction on low-energy reaction mechanisms

    CERN Document Server

    Zheng, H; Baran, V; Burrello, S

    2015-01-01

    We study the dipole response associated with the Pygmy Dipole Resonance (PDR) and the Isovector Giant Dipole Resonance (IVGDR), in connection with specific properties of the nuclear effective interaction (symmetry energy and momentum dependence), in the neutron-rich systems $^{68}$Ni, $^{132}$Sn and $^{208}$Pb. We perform our investigation within a microscopic transport model based on the Landau-Vlasov kinetic equation. We observe that the peak energies of PDR and IVGDR are shifted to higher values when employing momentum dependent interactions, with respect to the results obtained neglecting momentum dependence. The calculated energies are close to the experimental values and similar to the results obtained in Hartree-Fock (HF) with Random Phase Approximation (RPA) calculations.

  7. QCD and high energy hadronic interactions. Experiments summary

    International Nuclear Information System (INIS)

    The experimental contributions to the 1993 Rencontres de Moriond on QCD and High Energy Hadronic Interactions are summarized. New results were given on the neutron spin structure function with the first test of the Bjorken sum rule, the first very low x measurements at HERA, as well as numerous progress in DIS, direct photons, jet production, soft gluons effects and ?s measurements. Data on exotic bound states, heavy quark production and top search were discussed. B physics results included the first observation of B0antiB0 time oscillations. The new measurement of the real part of the pantip scattering amplitude was reported as well as other diffractive results. 4 figs., 6 tabs., 39 refs

  8. Modeling energy-economy interactions using integrated models

    International Nuclear Information System (INIS)

    Integrated models are defined as economic energy models that consist of several submodels, either coupled by an interface module, or embedded in one large model. These models can be used for energy policy analysis. Using integrated models yields the following benefits. They provide a framework in which energy-economy interactions can be better analyzed than in stand-alone models. Integrated models can represent both energy sector technological details, as well as the behaviour of the market and the role of prices. Furthermore, the combination of modeling methodologies in one model can compensate weaknesses of one approach with strengths of another. These advantages motivated this survey of the class of integrated models. The purpose of this literature survey therefore was to collect and to present information on integrated models. To carry out this task, several goals were identified. The first goal was to give an overview of what is reported on these models in general. The second one was to find and describe examples of such models. Other goals were to find out what kinds of models were used as component models, and to examine the linkage methodology. Solution methods and their convergence properties were also a subject of interest. The report has the following structure. In chapter 2, a 'conceptual framework' is given. In chapter 3 a number of integrated models is described. In a table, a complete overview is presented of all described models. Finally, in chapter 4, the report is summarized, and conclusions are drawn regarding the advantages and drawbacks of integrated models. 8 figs., 29 refs

  9. Interactive seismic interpretation with piecewise global energy minimization

    KAUST Repository

    Hollt, Thomas

    2011-03-01

    Increasing demands in world-wide energy consumption and oil depletion of large reservoirs have resulted in the need for exploring smaller and more complex oil reservoirs. Planning of the reservoir valorization usually starts with creating a model of the subsurface structures, including seismic faults and horizons. However, seismic interpretation and horizon tracing is a difficult and error-prone task, often resulting in hours of work needing to be manually repeated. In this paper, we propose a novel, interactive workflow for horizon interpretation based on well positions, which include additional geological and geophysical data captured by actual drillings. Instead of interpreting the volume slice-by-slice in 2D, we propose 3D seismic interpretation based on well positions. We introduce a combination of 2D and 3D minimal cost path and minimal cost surface tracing for extracting horizons with very little user input. By processing the volume based on well positions rather than slice-based, we are able to create a piecewise optimal horizon surface at interactive rates. We have integrated our system into a visual analysis platform which supports multiple linked views for fast verification, exploration and analysis of the extracted horizons. The system is currently being evaluated by our collaborating domain experts. © 2011 IEEE.

  10. Testing models of vacuum energy interacting with cold dark matter

    CERN Document Server

    Li, Yun-He; Zhang, Xin

    2015-01-01

    We test the models of vacuum energy interacting with cold dark matter, and try to probe the possible deviation from the $\\Lambda$CDM model using current observations. We focus on two specific models, $Q=3\\beta H\\rho_{\\Lambda}$ and $Q=3\\beta H\\rho_c$. The data combinations come from the Planck 2013 data, the baryon acoustic oscillations measurements, the Type-Ia supernovae data, the Hubble constant measurement, the redshift space distortions data and the galaxy weak lensing data. For the $Q=3\\beta H\\rho_c$ model, we find that it can be tightly constrained by all the data combinations, while for the $Q=3\\beta H\\rho_{\\Lambda}$ model there still exist significant degeneracies between parameters. The tightest constraints for the coupling constant are $\\beta=-0.026^{+0.036}_{-0.053}$ (for $Q=3\\beta H\\rho_{\\Lambda}$) and $\\beta=-0.00045\\pm0.00069$ (for $Q=3\\beta H\\rho_c$) at $1\\sigma$ level. For all the fit results, we find that the null interaction $\\beta=0$ is always consistent with data. Our work completes the di...

  11. Rewetting phenomena and their relation to intermolecular forces between a hot wall and the fluid

    International Nuclear Information System (INIS)

    The rewetting phenomena and the different physical concepts which are used in their modelisation are reviewed. The present work studies the effect of the intermolecular forces between the hot wall and the fluid on this phase transition. Using suitable approximations, a local equation of state is obtained by the treatment of the fluid-fluid and fluid-wall intermolecular interactions. This local equation of state depends on the distance from the wall, and the critical pressure and temperature become a function of the distance from the wall, whereas the critical density is left constant throughout the fluid. At the wall, the critical pressure and temperature are half their bulk values and increase towards the bulk value as the distance from the wall increases. The penetration of a temperature profile in this fluid is studied by assuming that the liquid density is not strongly affected by this temperature profile as long as there is no phase transition. It is shown that the phase transition will occur extremely rapidly when the interfacial temperature upon contact is higher than the minimum of the local spinodal temperature, which varies with the distance from the wall. The result ist cast in the form of an interfacial rewetting temperature fTc above which rewetting of the surface by liquid-wall contacts is not expected because these contacts will be terminated in extremely short times. Comparing the theory with available data shows that in the usual rewetting situations the theory reduces to the use of the bulk spinodal temperature. For surfaces coated with poorly wetted materials the correction factor due to surface effects applies, reducing the rewetting temperature, in agreement with the experimental data. For liquid metals it appears that the theory is applied in a region where the basic theoretical approximations are very coarse; but even in that case the experimental trend is qualitatively predicted by the theory. (author) 43 figs., 11 tabs., 105 refs

  12. Interactions of some fluids with dark energy in f(T) theory

    OpenAIRE

    Nassur, S. B.; Houndjo, M. J. S.; Salako, I. G.; Tossa, J.

    2016-01-01

    We investigate the interaction of the dark energy with some fluids filling the universe in the framework of $f(T)$ theory, where $T$ denotes the torsion scalar, searching for the associated gravitational actions. Dark energy is assumed to be of gravitational origin. The interaction of dark energy and baryonic matter is considered resulting in a decay of the energy density of the ordinary matter, where universe appears as driven by cosmological constant. Furthermore we consider the interaction...

  13. Interaction of turbulence with flexible beams in fluidic energy harvesting

    Science.gov (United States)

    Danesh Yazdi, Amir Hossein

    Advances in the development and fabrication of microelectronics have enhanced the energy efficiency of these devices to such an extent that they can now operate at very low power levels, typically on the order of a few microwatts or less. Batteries are primarily thought of as the most convenient source of power for electronic devices, but in instances where a device needs to be deployed in a difficult-to-access location such as under water, the added weight and especially maintenance of such a power source becomes costly. A solution that avoids this problem and is particularly attractive in a "deploy & forget" setting involves designing a device that continuously harvests energy from the surrounding environment. Piezoelectric energy harvesters, which employ the direct piezoelectric effect to convert mechanical strain into electrical energy, have garnered a great deal of attention in the literature. This work presents an overview of the experimental and analytical results related to fluidic energy extraction from vortex and turbulent flow using piezoelectric cantilever beams. In particular, the development of the FTGF (Fourier Transform-Green's Function) solution approach to the coupled, continuous electromechanical equations governing piezoelectric cantilever beams and the associated TFB (Train of Frozen Boxcars) method, which models the flow of vortices and turbulent eddies over the beams, is discussed. In addition, the behavior of fluidic energy harvesters in decaying isotropic, homogeneous grid turbulence generated by passive, semi-passive and active grids is examined and a novel grid-turbulence forcing model is introduced. An expression for the expected power output of the piezoelectric beam is obtained by utilizing this forcing function model in the single degree-of-freedom electromechanical equations. Furthermore, approximate, closed-form solutions to the theoretical expected power are derived from deterministic turbulence forcing models and are compared with experimental results. The power output response spectrum of a generic piezoelectric beam in grid turbulence is also studied and recommendations are made on the type of beam that will produce the largest output in turbulence. Finally, the interaction of two piezoelectric harvesters in quiescent flow and grid turbulence is theoretically modeled and experimentally validated.

  14. Interactions of energy technology development and new energy exploitation with water technology development in China

    International Nuclear Information System (INIS)

    Interactions of energy policies with water technology development in China are investigated using a hybrid input-output model and scenario analysis. The implementation of energy policies and water technology development can produce co-benefits for each other. Water saving potential of energy technology development is much larger than that of new energy exploitation. From the viewpoint of proportions of water saving co-benefits of energy policies, energy sectors benefit the most. From the viewpoint of proportions of energy saving and CO2 mitigation co-benefits of water technology development, water sector benefits the most. Moreover, economic sectors are classified into four categories concerning co-benefits on water saving, energy saving and CO2 mitigation. Sectors in categories 1 and 2 have big direct co-benefits. Thus, they can take additional responsibility for water and energy saving and CO2 mitigation. If China implements life cycle materials management, sectors in category 3 can also take additional responsibility for water and energy saving and CO2 mitigation. Sectors in category 4 have few co-benefits from both direct and accumulative perspectives. Thus, putting additional responsibility on sectors in category 4 might produce pressure for their economic development. -- Highlights: ? Energy policies and water technology development can produce co-benefits for each other. ? For proportions of water saving co-benefits of energy policies, energy sectors benefit the most. ? For proportions of energy saving and CO2 mitigation co-benefits of water policy, water sector benefits the most. ? China’s economic sectors are classified into four categories for policy implementation at sector scale.

  15. 2010 Atomic & Molecular Interactions Gordon Research Conference

    Energy Technology Data Exchange (ETDEWEB)

    Todd Martinez

    2010-07-23

    The Atomic and Molecular Interactions Gordon Conferences is justifiably recognized for its broad scope, touching on areas ranging from fundamental gas phase and gas-condensed matter collision dynamics, to laser-molecule interactions, photophysics, and unimolecular decay processes. The meeting has traditionally involved scientists engaged in fundamental research in gas and condensed phases and those who apply these concepts to systems of practical chemical and physical interest. A key tradition in this meeting is the strong mixing of theory and experiment throughout. The program for 2010 conference continues these traditions. At the 2010 AMI GRC, there will be talks in 5 broadly defined and partially overlapping areas of intermolecular interactions and chemical dynamics: (1) Photoionization and Photoelectron Dynamics; (2) Quantum Control and Molecules in Strong Fields; (3) Photochemical Dynamics; (4) Complex Molecules and Condensed Phases; and (5) Clusters and Reaction Dynamics. These areas encompass many of the most productive and exciting areas of chemical physics, including both reactive and nonreactive processes, intermolecular and intramolecular energy transfer, and photodissociation and unimolecular processes. Gas phase dynamics, van der Waals and cluster studies, laser-matter interactions and multiple potential energy surface phenomena will all be discussed.

  16. Biomolecular interactions probed by fluorescence resonance energy transfer

    Science.gov (United States)

    Lange, Daniela Charlotte

    2000-09-01

    This thesis describes how a physical phenomenon, Fluorescence Resonance Energy Transfer (FRET), can be exploited for the study of interactions between biomolecules. The physical basis of this phenomenon is discussed and it is described how some of its characteristics can be exploited in measurement. A recently introduced method, photobleaching FRET microscopy, was implemented and its image analysis refined to suit our biological context. Further, a new technique is proposed, which combines FRET with confocal laser scanning microscopy to optimize resolution and to allow for 3D-studies in living cells. The first part of this thesis presents the application of FRET to the study of oligomerization of G-protein coupled receptors (GPCRs), which was performed at the Fraser Laboratories at McGill University in Montreal. It is demonstrated how FRET microscopy allowed us to circumvent problems of traditional biochemical approaches and provided the first direct evidence for GPCR oligomerization in intact cells. We found that somatostatin receptors (SSTRs) functionally interact by forming oligomers with their own kind, with different SSTR isoforms, and even with distantly related GPCRs, such as dopamine receptors, the latter of which is breaking with the dogma that GPCRs would only pair up with their own kind. The high sensitivity of the FRET technique allowed us to characterize these interactions under more physiological conditions, which lead to the observation that oligomerization is induced by receptor agonist. We further studied the differential effects of agonists and antagonists on receptor oligomerization, leading to a model for the molecular mechanism underlying agonist/antagonist function and receptor activation. The second part was carried out at the Neurobiology Laboratory of the VA Medical Center in Newington, CT. The objective was to further our understanding of Niemann- Pick type C disease, which is characterized by a defect in intracellular cholesterol trafficking, with emphasis on defining the role of apoD in this disease. In vitro FRET studies on the dynamic structure of apoD and its close relative, ?-lactoglobulin, are presented. FRET combined with conventional fluorescence microscopy established a direct association between apoD and cholesterol in situ. No evidence was found for interaction between apoD and the NPC1 protein.

  17. Dark Energy-Dark Matter Interaction from the Abell Cluster A586

    CERN Document Server

    Bertolami, Orfeu; Delliou, Morgan Le

    2008-01-01

    We find that deviation from the virial equilibrium of the Abell Cluster A586 yields evidence of the interaction between dark matter and dark energy. We argue that this interaction might imply a violation of the Equivalence Principle. Our analysis show that evidence is found in the context of two different models of dark energy-dark matter interaction.

  18. Proton-nucleus interaction at low and intermediate energies

    International Nuclear Information System (INIS)

    The elastic scattering of protons from a number of nuclei between 12C and 208Pb is the subject matter of the present study at the projectile energies 30.3, 66.5 and 1044 MeV within the framework of the generalized diffraction models of Frahn and Venter. The best fit parameter values, the cut-off angular momentum T, the rounding parameter ? and the real nuclear phase shift ? are obtained from the elastic scattering analyses of the entrance channel angular distributions. The interaction radius R, diffuseness d and the reaction cross section ?r, have been estimated from the best fit parameters. Energy dependence of T, ? and ?r/?R2 and mass dependence of R are discussed. Finally, the inelastic scattering of protons exciting to the lowest 2+ collective states in 42,44,48Ca, 48Ti and 148,154Sm and 3- collective state in 40Ca are studied to check the validity of the derived elastic scattering parameters. The deformation parameters ?2 and ?3, so extracted are comparable with the available values in literature. (author)

  19. Neutral strange particle production in neutrino interactions at Tevatron energies

    International Nuclear Information System (INIS)

    This thesis reports on a study of neutral strange particle production by high energy muon-neutrinos. The neutrinos were obtained from a 800 GeV proton beam-dump at Fermilab. Neutrino events were observed using a hybrid bubble chamber detector system. The data contained deep inelastic neutrino-nucleon interactions with an average momentum transfer 2> = 23 (GeV/c)2. Rates for K0 and ? production in neutrino and anti-neutrino charged current events are presented. The distributions of these particles in Feynman x and rapidity are also studied. Significant differences were observed in the production mechanism for the K0 meson and the ? baryon. The production rates of K0's were observed to increase with energy, whereas the rates for ? production remained essentially constant. In Feynman x, the K0's were produced in the central region and the ?'s were produced backwards. The data are compared with the LUND monte carlo for string fragmentation. In the monte carlo, K0's are mostly produced from s/bar s/ pair production during fragmentation. The ?'s are generally produced through recombination with the diquark from the target nucleon. The data agree with this model for strange particle production. 39 refs., 24 figs., 10 tabs

  20. Experimental Studies of Elementary Particle Interactions at High Energies

    Energy Technology Data Exchange (ETDEWEB)

    Goulianos, Konstantin [The Rockefeller University

    2013-07-31

    This is the final report of a program of research on ``Experimental Studies of Elementary Particle Interactions at High Energies'' of the High Energy Physics (HEP) group of The Rockefeller University. The research was carried out using the Collider Detector at Fermilab (CDF) and the Compact Muon Solenoid (CMS) detector at the Large Hadron Collider (LHC) at CERN. Three faculty members, two research associates, and two postdoctoral associates participated in this project. At CDF, we studied proton-antiproton collisions at an energy of 1.96 TeV. We focused on diffractive interactions, in which the colliding antiproton loses a small fraction of its momentum, typically less than 1%, while the proton is excited into a high mass state retaining its quantum numbers. The study of such collisions provides insight into the nature of the diffractive exchange, conventionally referred to as Pomeron exchange. In studies of W and Z production, we found results that point to a QCD-based interpretation of the diffractive exchange, as predicted in a data-driven phenomenology developed within the Rockefeller HEP group. At CMS, we worked on diffraction, supersymmetry (SUSY), dark matter, large extra dimensions, and statistical applications to data analysis projects. In diffraction, we extended our CDF studies to higher energies working on two fronts: measurement of the single/double diffraction and of the rapidity gap cross sections at 7 TeV, and development of a simulation of diffractive processes along the lines of our successful model used at CDF. Working with the PYTHIA8 Monte Carlo simulation authors, we implemented our model as a PYTHIA8-MBR option in PYTHIA8 and used it in our data analysis. Preliminary results indicate good agreement. We searched for SUSY by measuring parameters in the Constrained Minimal Supersymmetric extension of the Standard Model (CMSSM) and found results which, combined with other experimental constraints and theoretical considerations, indicate that the CMSSM is not a viable model. Expressing our results in terms of simple topologies, we exclude squark masses below 0.75 TeV and gluino masses below 1.1 TeV. Astrophysical measurements suggest that about 80% of the matter density of the Universe is non-luminous. One of the theories on dark matter attributes it to Weakly Interacting Massive Particles (WIMPs). We searched for WIMPs in 7 TeV and 8 TeV collisions at CMS and set limits on WIMP production rates, which are competitive and complementary to those of direct detection experiments. Searching for monojets (events with only one jet), which in a popular model could be produced by a jet paired by a gravitino that escapes into extra dimensions, we significantly improved the previously set limit. Our results have been used to set limits on Higgs decay to invisible particles and on production of top squarks in compressed SUSY scenarios. Statistics. We computed Bayesian reference priors for several types of measurement and used them in the analysis of CMS data; investigated the applicability of bootstrap methods to HEP measurements; studied several issues associated with simple-versus-simple hypothesis testing and applied the resulting methods to the measurement of some properties of the top quark and Higgs boson.