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Sample records for improves protein digestive

  1. Improving performance of broilers fed lower digestible protein diets

    Qaisrani, S.N.

    2014-01-01

    Background and Problem Statement There is a great interest in recent years to replace soybean meal by cost effective protein sources such as rapeseed meal and maize gluten in animal feed. In poultry, this replacement, however, may result in a poorer performance due to among others its low ileal digestibility, which may lead to hindgut protein fermentation. This hindgut protein fermentation can result in the production of harmful compounds such as ammonia, branched chain fatty acids, biogenic ...

  2. High Hydrostatic Pressure Pretreatment of Whey Protein Isolates Improves Their Digestibility and Antioxidant Capacity

    Michèle M. Iskandar

    2015-05-01

    Full Text Available Whey proteins have well-established antioxidant and anti-inflammatory bioactivities. High hydrostatic pressure processing of whey protein isolates increases their in vitro digestibility resulting in enhanced antioxidant and anti-inflammatory effects. This study compared the effects of different digestion protocols on the digestibility of pressurized (pWPI and native (nWPI whey protein isolates and the antioxidant and anti-inflammatory properties of the hydrolysates. The pepsin-pancreatin digestion protocol was modified to better simulate human digestion by adjusting temperature and pH conditions, incubation times, enzymes utilized, enzyme-to-substrate ratio and ultrafiltration membrane molecular weight cut-off. pWPI showed a significantly greater proteolysis rate and rate of peptide appearance regardless of digestion protocol. Both digestion methods generated a greater relative abundance of eluting peptides and the appearance of new peptide peaks in association with pWPI digestion in comparison to nWPI hydrolysates. Hydrolysates of pWPI from both digestion conditions showed enhanced ferric-reducing antioxidant power relative to nWPI hydrolysates. Likewise, pWPI hydrolysates from both digestion protocols showed similar enhanced antioxidant and anti-inflammatory effects in a respiratory epithelial cell line as compared to nWPI hydrolysates. These findings indicate that regardless of considerable variations of in vitro digestion protocols, pressurization of WPI leads to more efficient digestion that improves its antioxidant and anti-inflammatory properties.

  3. Improvement of Protein Digestibility in Jatropha curcas Seed Cakes by Gamma Irradiation

    Full text: The effect of gamma radiation on protein digestibility of Jatropha curcas press cake was investigated using in vitro digestibility technique. Six varieties of Jatropha curcas seeds were subjected to cobalt-60 gamma radiation at doses of 10-100 kGy. All treated seeds were defatted by screw press. In vitro protein digest abilities in defatted seeds were assayed using trinitrobenzene sulphonic acid (TNBS) method, by which the contents of alpha amino induced from the function of enzymes were determined using L-alanine as a reference standard. It was found that irradiation treatment at 60 kGy significantly increased the protein digestibility by 15-92%. Also, the results showed that moisture, crude protein, fat and ash contents were unchanged by irradiation, whereas fiber was significantly decreased (p < 0.05). Therefore, irradiation could serve as a possible processing method for protein utilization improvement in defatted Jatropha curcas seeds before using as a protein supplement in animal feed

  4. Improving performance of broilers fed lower digestible protein diets

    Qaisrani, S.N.

    2014-01-01

    Background and Problem Statement There is a great interest in recent years to replace soybean meal by cost effective protein sources such as rapeseed meal and maize gluten in animal feed. In poultry, this replacement, however, may result in a poorer performance due to among others i

  5. Digestibility of sorghum proteins.

    Axtell, J D; Kirleis, A. W.; Hassen, M M; D'Croz Mason, N; Mertz, E T; Munck, L.

    1981-01-01

    Published information indicates that rice, maize, and wheat proteins are much more digestible in children than sorghum proteins are (66-81% compared with 46%). However, this digestibility difference cannot be demonstrated with the weanling rat, which gave digestibility values of 80% for cooked and 85% for uncooked sorghum gruels. Therefore, a search was made for a laboratory system sensitive to the digestibility differences between sorghum and other cereals. We found that porcine pepsin in vi...

  6. Improving the in vitro protein digestibility of sorghum with reducing agents

    Hamaker, B. R.; Kirleis, A. W.; Butler, L G; Axtell, J. D.; Mertz, E T

    1987-01-01

    We have shown in previous reports that cooked sorghum protein is less digestible than other cooked cereal proteins. The pepsin-indigestible proteins in sorghum were found to be mainly prolamin proteins. Cooking sorghum in the presence of 2-mercaptoethanol increased protein digestibility (in vitro with pepsin or trypsin/chymotrypsin) to a level comparable with other cereals. At a concentration of 100 mM, other reducing agents (dithiothreitol, sodium bisulfite, and L-cysteine) were equally effe...

  7. Combination of acid labile detergent and C18 Empore™ disks for improved identification and sequence coverage of in-gel digested proteins.

    Koehn, Henning; Lau, Benjamin; Clerens, Stefan; Plowman, Jeffrey E; Dyer, Jolon M; Ramli, Umi Salamah; Deb-Choudhury, Santanu

    2011-04-01

    A protocol for improved extraction of peptides from in-gel protein digests, using a combination of the acid labile surfactant, sodium deoxycholate (SDC) and C18 Empore™ membranes, is presented. This approach results in better mass spectrum quality, higher numbers of identified peptide peaks and improved identification scores compared to standard tryptic digestion protocols, or protocols using only SDC or only C18 Empore™ disks. The advantages of the new protocol are demonstrated for two different types of samples: Merino wool intermediate filament proteins and Elaeis guineensis (oil palm) mesocarp proteins. PMID:21327873

  8. Improvement of anaerobic digestion of sludge

    Dohanyos, Michael; Zabranska, Jana; Kutil, Josef; Jenicek, Pavel

    2003-07-01

    Anaerobic digestion improvement can be accomplished by different methods. Besides optimization of process conditions is frequently used pretreatment of input sludge and increase of process temperature. Thermophilic process brings a higher solids reduction and biogas production, the high resistance to foaming, no problems with odour, the higher effect of destroying pathogens and the improvement of the energy balance of the whole treatment plant. Disintegration of excess activated sludge in lysate centrifuge was proved in full-scale conditions causing increase of biogas production. The rapid thermal conditioning of digested sludge is acceptable method of particulate matter disintegration and solubilization. (author)

  9. Cooking temperature is a key determinant of in vitro meat protein digestion rate: investigation of underlying mechanisms.

    Bax, Marie-Laure; Aubry, Laurent; Ferreira, Claude; Daudin, Jean-Dominique; Gatellier, Philippe; Rémond, Didier; Santé-Lhoutellier, Véronique

    2012-03-14

    The present study aimed to evaluate the digestion rate and nutritional quality of pig muscle proteins in relation to different meat processes (aging, mincing, and cooking). Under our experimental conditions, aging and mincing had little impact on protein digestion. Heat treatments had different temperature-dependent effects on the meat protein digestion rate and degradation potential. At 70 °C, the proteins underwent denaturation that enhanced the speed of pepsin digestion by increasing enzyme accessibility to protein cleavage sites. Above 100 °C, oxidation-related protein aggregation slowed pepsin digestion but improved meat protein overall digestibility. The digestion parameters defined here open new insights on the dynamics governing the in vitro digestion of meat protein. However, the effect of cooking temperature on protein digestion observed in vitro needs to be confirmed in vivo. PMID:22335241

  10. Excess sludge and herbaceous plant co-digestion for volatile fatty acids generation improved by protein and cellulose conversion enhancement.

    Zhang, Dong; Fu, Xiang; Jia, Shuting; Dai, Lingling; Wu, Bing; Dai, Xiaohu

    2016-01-01

    Volatile fatty acids (VFA), the substrate for the bio-methane yield, can be generated from excess sludge or herbaceous plant waste during the anaerobic fermentation process. However, due to the high protein content and the low carbon-to-nitrogen (C/N) ratio of excess sludge, the nutrient utilization of excess sludge to generate VFA and bio-methane usually becomes inefficient and uneconomical. In this study, the laboratory findings showed that both the organic conversion and VFA generation from the mixture of excess sludge and herbaceous plant waste (e.g., the tall fescue was used as model), could be significantly enhanced, especially when the C/N ratio was adjusted to 20/1. In order to get more VFA and bio-methane generation, the effects of different thermal pretreatment strategies on the excess sludge and tall fescue co-fermentation were investigated. The study of thermal pretreatment revealed that the maximal VFA generation (585.2 g COD/kg of total solids (TS)) from the mixture of sludge and tall fescue by thermal pretreatment at 100 °C was almost 9.9 and 4.1 times higher than un-pretreated sole sludge and tall fescue, respectively. Then the mechanism of enhanced VFA generation from the mixture by thermal pretreatment was investigated. It was observed that pretreating the mixture of excess sludge and tall fescue at 100 °C caused the greatest hydrolysis and acidification. The produced VFA was applied to generate the bio-methane, and it was showed that the bio-methane produced from the thermal-pretreated (100 °C) mixture was almost 9.6 and 4.9 times as high as un-pretreated sole sludge and tall fescue, respectively. In addition, the detection of enzyme activities showed that the main enzymes related to cellulose, hemicelluloses, lignin degradation, and acid forming were more active when VFA was produced from the thermal-pretreated (100 °C) mixture than other cases. Class Bacteroidia, class β-Proteobateria, α-Proteobateria, and phylum Firmicutes of the reactor

  11. Functionalizing Microporous Membranes for Protein Purification and Protein Digestion

    Dong, Jinlan; Bruening, Merlin L.

    2015-07-01

    This review examines advances in the functionalization of microporous membranes for protein purification and the development of protease-containing membranes for controlled protein digestion prior to mass spectrometry analysis. Recent studies confirm that membranes are superior to bead-based columns for rapid protein capture, presumably because convective mass transport in membrane pores rapidly brings proteins to binding sites. Modification of porous membranes with functional polymeric films or TiO2 nanoparticles yields materials that selectively capture species ranging from phosphopeptides to His-tagged proteins, and protein-binding capacities often exceed those of commercial beads. Thin membranes also provide a convenient framework for creating enzyme-containing reactors that afford control over residence times. With millisecond residence times, reactors with immobilized proteases limit protein digestion to increase sequence coverage in mass spectrometry analysis and facilitate elucidation of protein structures. This review emphasizes the advantages of membrane-based techniques and concludes with some challenges for their practical application.

  12. Variation in In Vitro Digestibility of Barley Protein

    Buchmann, N. B.

    1979-01-01

    In vitro digestibility of protein was measured with pepsin/pancreatin in 321 spring barley lines grown in the field. The variation in digestibility was far less than the variation in the protein content. A small environmental influence on the digestibility was found. Two entries had slightly...

  13. Perspectives into factors limiting in vivo digestion of legume proteins: antinutritional compounds or storage proteins?

    Carbonaro, M; Grant, G; Cappelloni, M; Pusztai, A

    2000-03-01

    The in vivo protein digestibility of raw and cooked common bean (Phaseolus vulgaris L.) and faba bean (Vicia faba L.) and of protein fractions extracted from them was determined with growing rats. Overnight-fasted rats were intubated with a protein suspension or fed the same amount of protein added to a basal diet. The rats were killed 1 h later, the contents of stomach and small intestine were washed out, and their protein contents were measured. The in vivo digestibility of proteins of raw common bean flour was 72.4% and not significantly improved after cooking. In contrast, the digestibility of faba bean proteins was decreased from 86.5 to 60.6% by the thermal treatment. Globulins from either species had similar digestibilities (approximately 70%). Proteins in the soluble fraction of cooked beans were more digestible than those in the insoluble fraction, which contained the bulk of the proteins. Hemagglutination assay and trypsin inhibitor determination indicated that after the thermal treatment only very low, nonharmful, levels of both lectin and inhibitor remained. Faba bean contained more polyphenols than common bean samples, with most of the polyphenols being bound to globulins. However, protein-bound polyphenols were markedly decreased after cooking. SDS-PAGE characterization of the gastrointestinal digesta of globulins and amino acid analysis of undigested proteins of whole cooked common bean and faba bean suggested that it is mainly the structural properties of the storage proteins and not their binding of polyphenols, which determines the extent of protein aggregation on autoclaving and may therefore be responsible for their low digestibility. PMID:10725143

  14. Pepsin digestibility of proteins in sorghum and other major cereals

    Mertz, Edwin T.; Hassen, Mohamed M.; Cairns-Whittern, Carleen; Kirleis, Allen W.; Tu, Lichuan; John D. Axtell

    1984-01-01

    We have shown previously that sorghum is highly digestible in the rat. However, other workers have shown that sorghum is much less digestible than wheat, maize, and rice in young children. Because the rat does not show these digestibility differences, we developed an empirical pepsin digestion method, first reported in 1981, which simulates the digestion values found in children. In this report the method has been improved and used to analyze wheat, maize, rice, millet, and sorghum and certai...

  15. The efficient approaches for enzymatic digestion of plant proteins

    Dyčka, Filip

    2012-01-01

    In this work the fast and efficient methods applying ultrasound and infrared radiation were employed for in-gel digestion of proteins extracted from Hordeum vulgare. These techniques can be used instead of time consuming conventional protocol prior mass spectrometry analysis. The comparative study indicates that the examined protocols are able to enhance digestion efficiency and protein identification.

  16. Protein and starch digestibilities and mineral availability of products developed from potato, soy and corn flour.

    Gahlawat, P; Sehgal, S

    1998-01-01

    A technique for development of potato flour was standardized. Five products viz. cake, biscuit, weaning food, panjiri and ladoo were prepared incorporating potato flour, defatted soy flour and corn flour. Baking and roasting were the major processing techniques employed for the development of these products. Protein, ash and fat contents of potato flour were almost similar to those of raw potatoes. Significant differences in protein, ash and fat contents of all the products were observed. Protein and starch digestibility of potato flour was significantly higher than that of raw potatoes. Protein digestibility increased by 12 to 17 percent on baking or roasting of products. Processed products had significantly higher starch digestibility and mineral availability compared to raw products. Thus, it can be concluded that roasting and baking are effective means of improving starch and protein digestibility and mineral availability of products. PMID:9839814

  17. Mathematical modeling for digestible protein in animal feeds for tilapia

    Luiz Vítor Oliveira Vidal; Wilson Massamitu Furuya; Elias Nunes Martins; Tadeu Orlandi Xavier; Mariana Michelato; Themis Sakaguti Graciano

    2012-01-01

    The objective of this study was to formulate mathematical models to estimate digestible protein in some animal feeds for tilapia. Literature results of the proximate composition of crude protein, ether extract, and mineral matter, as well as digestible protein obtained in biological assays, were used. The data were subjected to multiple linear stepwise backward regression. Path analysis was performed to measure the direct and indirect effects of each independent variable on the dependent one....

  18. INVITRO DIGESTIBILITY OF PROTEIN FROM BARLEY AND OTHER CEREALS

    Buchmann, N. B.

    1979-01-01

    An in vitro method for measuring barley protein digestibility is presented. Samples were first incubated with pepsin in HCl; pancreatin was then added concomitantly with a bacteriostatic borate buffer. After TCA-precipitation, soluble nitrogen was measured. The digestion was unaffected by...

  19. Mathematical modeling for digestible protein in animal feeds for tilapia

    Luiz Vítor Oliveira Vidal

    2012-06-01

    Full Text Available The objective of this study was to formulate mathematical models to estimate digestible protein in some animal feeds for tilapia. Literature results of the proximate composition of crude protein, ether extract, and mineral matter, as well as digestible protein obtained in biological assays, were used. The data were subjected to multiple linear stepwise backward regression. Path analysis was performed to measure the direct and indirect effects of each independent variable on the dependent one. To validate the model, the experience used data from independent studies and values obtained from a digestibility trial with juvenile Nile tilapia testing five meat and bone meals, using the Guelph feces collecting system and chromium oxide (III as an indicator. The obtained model used to estimate digestible protein values (DP of animal origin is: DP(g kg-1 = -204.15+1.203xCP;R² = 0.953. The path coefficients showed a high direct positive effect (0.900 of crude protein on the digestible protein content. The mineral matter content has an indirect negative effect on protein digestibility (-0.710, reducing the crude protein content and quality.

  20. Effects of dietary protein concentration on performance and nutrient digestibility in Pekin ducks during aflatoxicosis.

    Chen, X; Murdoch, R; Zhang, Q; Shafer, D J; Applegate, T J

    2016-04-01

    A 14-d study was conducted to determine the impact of dietary crude protein concentration on performance, serum biochemistry, and nutrient digestive functions in Pekin ducklings during aflatoxicosis. A total of 144 male Pekin ducklings were randomly allotted to 4 dietary treatments arranged in a 2×2 factorial with 2 crude protein (CP) (20 and 24% on an analyzed basis) with or without 0.2 mg/kg aflatoxin B1 (AFB1) (0.21 mg/kg analyzed). The AFB1 reduced BW gain, feed intake, and breast muscle weight by 33 to 43% (PPekin ducklings primarily through inhibited feed intake, as well as influence nutrient digestion processes (jejunum morphology, digestive enzyme activity, and apparent energy digestibility). Higher dietary CP can improve growth performance of ducklings regardless of AF exposure, but did not interact with dietary AFB1 on performance, serum biochemistry, or nutrient digestion in Pekin ducklings from hatch to 14 d. PMID:26740138

  1. Subcritical Water Processing of Proteins: An Alternative to Enzymatic Digestion?

    Powell, Thomas; Bowra, Steve; Cooper, Helen J

    2016-06-21

    Subcritical water is an emerging tool in the processing of bioorganic waste. Subcritical water is an environmentally benign solvent which has the potential to provide an alternative to traditional methods of protein hydrolysis without the inclusion of expensive acids or enzymes. To date, most studies on the subcritical water mediated hydrolysis of proteins have focused on the production of amino acids, rather than the intermediate peptides. Here, we investigate the specificity of subcritical water with respect to the production of peptides from three model proteins, hemoglobin, bovine serum albumin, and β-casein, and compare the results with enzymatic digestion of proteins by trypsin. In addition, the effect of subcritical water (SCW) treatment on two protein post-translational modifications, disulfide bonds and phosphorylation, was investigated. The results show that high protein sequence coverages (>80%) can be obtained following subcritical water hydrolysis. These are comparable to those obtained following treatment with tryspin. Under mild subcritical water conditions (160 °C), all proteins showed favored cleavage of the Asp-X bond. The results for β-casein revealed favored cleavage of the Glu-X bond at subcritical water temperatures of 160 and 207 °C. That was similarly observed for bovine serum albumin at a subcritical water temperature of 207 °C. Subcritical water treatment results in very limited cleavage of disulfide bonds. Reduction and alkylation of proteins either prior to or post subcritical water treatment improve reported protein sequence coverages. The results for phosphoprotein β-casein show that, under mild subcritical water conditions, phosphorylation may be retained on the peptide hydrolysis products. PMID:27181872

  2. Effects of enzymatic dephosphorylation on infant in vitro gastrointestinal digestibility of milk protein concentrate.

    Liu, Dasong; Wang, Yuanyuan; Yu, Yun; Hu, Jinhua; Lu, Naiyan; Regenstein, Joe M; Wang, Miao; Zhou, Peng

    2016-04-15

    This study investigated the effects of dephosphorylation extent on infant in vitro gastric clotting property and gastrointestinal digestibility of milk protein concentrate. Dephosphorylation was affected by phosphatase type and incubation pH. A series of milk protein concentrate with 0-69% dephosphorylation were obtained by incubation with calf intestinal alkaline phosphatase at pH 6.5 for 0-420 min. Both β- and αs1-caseins in the modified milk protein concentrate showed multiply dephosphorylated isoforms with different numbers of phosphate groups depending on the extent of dephosphorylation. With increased dephosphorylation of milk protein concentrate, the gastric clotting extent decreased and the gastrointestinal digestibility increased under infant in vitro conditions. These results suggested the potential of developing a dephosphorylated milk protein concentrate, with improved gastric clotting property and gastrointestinal digestibility, to simulate the multiply phosphorylated patterns of human casein and hence to further the humanization of infant formula on a molecular level. PMID:26617031

  3. PROTEIN FRACTIONATION AND IN VITRO DIGESTIBILITY OF AZOLLA IN RUMINANTS

    S. PARASHURAMULU

    2013-05-01

    Full Text Available A study was undertaken to evaluate the nutritive value and digestibility of Azolla in ruminants by in vitro techniques. The crude protein, crude fibre and ether extract contents were at a level of 21.37%, 12.5% and 2.3%, respectively. The neutral and acid detergent fibre levels were about 35.4 and 23.9%, respectively. The average in vitro dry matter digestibility, in vitro organic matter digestibility and metabolozable energy contents were 79.5%, 63.8 mg/200mg and 7.36 MJ/kg DM (1759 kcal/kg, respectively. The various protein fractions A, B1, B2, B3 and C estimated by Cornell net crude protein solubility system were 18.22, 42.56, 15.15, 7.47 and 16.61% of total protein, respectively. The Azolla contained significantly higher B1 fraction followed by A, B2 and C and lowest fraction of C. Thus in view of above, present study indicated Azolla to be a good source protein supplement with 21.37% crude protein with highest B protein fractions, moderate source of energy (1759 kcal ME/kg, high dry matter and organic matter digestibilities and rich in trace minerals thus could be used as an alternate protein supplement or as supplementary protein supplement to ruminants.

  4. ENZYME DIGEST AND ACID HYDROLYZED INDEX OF PROTEIN QUALITY EVALUATION

    H.Mohammadiha P. Mostafavi

    1984-08-01

    Full Text Available A pancreatopeptidase (Elastase digest index was devised for a rapid and accurate estimation of protein quality. This index was calculated on the basis of all the amino acids released by an in-vitro Elastase digestion, acid hydrolyses of same sample and the residue of enzyme hydrolyzed. The amino acids were determined by Thin-Layer Chromatography. Samples used were cooked white kidneybeans, cooked and over-heated soybean powder, and skimmed milk powder. Good correlation was observed between elastase index value and their biological values reported in the literature from feeding trials. The pattern of aminoacids released by acid and by enzyme hydrolysis was about the same.

  5. INVITRO DIGESTIBILITY OF PROTEIN FROM BARLEY AND OTHER CEREALS

    Buchmann, N. B.

    1979-01-01

    An in vitro method for measuring barley protein digestibility is presented. Samples were first incubated with pepsin in HCl; pancreatin was then added concomitantly with a bacteriostatic borate buffer. After TCA-precipitation, soluble nitrogen was measured. The digestion was unaffected by......, the field-grown barleys per se differed too little for the accuracy to be confirmed. The other cereals tested, oats, rye, maize, wheat, and rice, gave unsatisfactory results with pepsin/pancreatin, and also with pepsin, pancreatin, or pronase used separately. The ranking of the cereals according to in...

  6. Serial CSTR digester configuration for improving biogas production from manure

    Boe, Kanokwan; Angelidaki, Irini

    2009-01-01

    A new configuration of manure digesters for improving biogas production has been investigated in laboratory scale. A single thermophilic continuous-flow stirred tank reactor (CSTR) operated with a hydraulic retention time (HRT) of 15 days was compared to a serial CSTR configuration with volume di...

  7. [Digestibility and protein quality of quinua: comparative study of quinua (Chenopodium Quinoa) seed and flour in children].

    López de Romaña, G; Graham, G G; Rojas, M; MacLean, W C

    1981-09-01

    Based on the hypothesis that the digestibility of quinua seed is the limiting factor in the utilization of nutrients from this staple, two quinua-based diets were prepared using quinua seeds and quinua flour. Theses diets were offered to children recovering from malnutrition. The digestibility and protein quality of the quinua diets were compared to those of a casein control diet by analyzing the children's metabolic balance. Results showed that digestibility of the quinua diets were compared to those of a casein control diet by analyzing the children's metabolic balance. Results showed that digestibility of the quinua seed is the limiting factor in the protein and energy utilization, and that milling improves significantly the digestibility of fat and carbohydrates. Findings also confirmed that the protein quality of quinua seeds is adequate for human consumption. PMID:6807239

  8. Rapid and efficient protein enzymatic digestion: An experimental comparison

    Dyčka, Filip; Bobáľ, P.; Mazanec, Karel; Bobálová, Janette

    2012-01-01

    Roč. 33, č. 2 (2012), s. 288-295. ISSN 0173-0835 R&D Projects: GA MŠk 1M0570; GA MŠk 1M06030; GA AV ČR IAA600040701 Institutional research plan: CEZ:AV0Z40310501 Keywords : in- gel digestion * MALDI-TOF MS * protein Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 3.261, year: 2012

  9. Removal of detergents from protein digests for mass spectrometry analysis

    Yeung, Yee-Guide; Nieves, Edward; Angeletti, Ruth; Stanley, E. Richard

    2008-01-01

    Detergents are commonly used for the extraction of hydrophobic proteins and must be removed for sensitive detection of peptides by mass spectrometry (MS). We demonstrate that ethyl acetate (EA) is able to extract octylglycoside (OG) from a protease digest without loss of peptides or interference with the MS peptide spectral profile. EA extraction was also found to reduce interference of SDS, NP-40 or Triton X-100 in the MS analysis.

  10. Protein oxidation and proteolysis during storage and in vitro digestion of pork and beef patties.

    Rysman, Tine; Van Hecke, Thomas; Van Poucke, Christof; De Smet, Stefaan; Van Royen, Geert

    2016-10-15

    The effect of protein oxidation on proteolysis during meat digestion was investigated following storage and subsequent in vitro digestion of beef and pork patties. Protein oxidation was evaluated as thiol oxidation, total carbonylation, and specific carbonylation (α-amino adipic and γ-glutamic semialdehyde). Furthermore, 4-hydroxyphenylalanine, a hydroxylation product of phenylalanine, was identified and quantified as a new protein oxidation marker. After 7days of chilled illuminated storage (4°C), significant oxidative modifications were quantified and the oxidative degradation was continued during in vitro digestion. The observed effects were more abundant in beef patties. Protein oxidation before digestion resulted in impaired proteolysis during digestion. PMID:27173550

  11. Relationship between Molecular Structure Characteristics of Feed Proteins and Protein In vitro Digestibility and Solubility.

    Bai, Mingmei; Qin, Guixin; Sun, Zewei; Long, Guohui

    2016-08-01

    The nutritional value of feed proteins and their utilization by livestock are related not only to the chemical composition but also to the structure of feed proteins, but few studies thus far have investigated the relationship between the structure of feed proteins and their solubility as well as digestibility in monogastric animals. To address this question we analyzed soybean meal, fish meal, corn distiller's dried grains with solubles, corn gluten meal, and feather meal by Fourier transform infrared (FTIR) spectroscopy to determine the protein molecular spectral band characteristics for amides I and II as well as α-helices and β-sheets and their ratios. Protein solubility and in vitro digestibility were measured with the Kjeldahl method using 0.2% KOH solution and the pepsin-pancreatin two-step enzymatic method, respectively. We found that all measured spectral band intensities (height and area) of feed proteins were correlated with their the in vitro digestibility and solubility (p≤0.003); moreover, the relatively quantitative amounts of α-helices, random coils, and α-helix to β-sheet ratio in protein secondary structures were positively correlated with protein in vitro digestibility and solubility (p≤0.004). On the other hand, the percentage of β-sheet structures was negatively correlated with protein in vitro digestibility (pfeed proteins are closely related to their in vitro digestibility at 28 h and solubility. Furthermore, the α-helix-to-β-sheet ratio can be used to predict the nutritional value of feed proteins. PMID:26954145

  12. Dry anaerobic digestion of lignocellulosic and protein residues

    Maryam M Kabir

    2015-12-01

    Full Text Available Utilisation of wheat straw and wool textile waste in dry anaerobic digestion (AD process was investigated. Dry-AD of the individual substrates as well as co-digestion of those were evaluated using different total solid (TS contents ranging between 6 to 30%. Additionally, the effects of the addition of nutrients and cellulose- or protein-degrading enzymes on the performance of the AD process were also investigated. Dry-AD of the wheat straw resulted in methane yields of 0.081 – 0.200 Nm3CH4/kgVS with the lowest and highest values obtained at 30 and 21% TS, respectively. The addition of the cellulolytic enzymes could significantly increase the yield in the reactor containing 13% TS (0.231 Nm3CH4/kg VS. Likewise, degradation of wool textile waste was enhanced significantly at TS of 13% with the addition of the protein-degrading enzyme (0.131 Nm3CH4/kg VS. Furthermore, the co-digestion of these two substrates showed higher methane yields compared with the methane potentials calculated for the individual fractions at all the investigated TS contents due to synergetic effects and better nutritional balance.

  13. Secondary Structure and Subunit Composition of Soy Protein In Vitro Digested by Pepsin and Its Relation with Digestibility

    Yang, Yong; Wang, Zhongjiang; Wang, Rui; Sui, Xiaonan; Qi, Baokun; Han, Feifei; Li, Yang; Jiang, Lianzhou

    2016-01-01

    In the present study, in vitro digestibility and structure of soybean protein isolates (SPIs) prepared from five soybean varieties were investigated in simulated gastric fluid (SGF), using FT-IR microspectroscopy and SDS-PAGE. The result indicated that β-conformations were prone to be hydrolyzed by pepsin preferentially and transformed to unordered structure during in vitro digestion, followed by the digestion of α-helix and unordered structure. A negative linear correlation coefficient was found between the β-conformation contents of five SPIs and their in vitro digestibility values. The intensities of the protein bands corresponding to 7S and 11S fractions were decreased and many peptide bands appeared at 11~15 kDa during enzymatic hydrolysis. β-conglycinin was poorly hydrolyzed with pepsin, especially the β-7S subunit. On the other hand, basic polypeptides of glycinin degraded slower than acidic polypeptides and represented a large proportion of the residual protein after digestion. 11S-A3 of all SPIs disappeared after 1 h digestion. Moreover, a significant negative linear correlation coefficient (r = −0.89) was found between the β-7S contents of five SPIs and their in vitro digestibility values. These results are useful for further studies of the functional properties and bioactive properties of these varieties and laid theoretical foundations for the development of the specific functional soy protein isolate. PMID:27298825

  14. Effects of Industrial Heating Processes of Milk-Based Enteral Formulas on Site-Specific Protein Modifications and Their Relationship to in Vitro and in Vivo Protein Digestibility.

    Wada, Yasuaki; Lönnerdal, Bo

    2015-08-01

    Heat treatments are applied to milk and dairy products to ensure their microbiological safety and shelf lives. Types of heating processes may have different effects on protein modifications, leading to different protein digestibility. In this study, milk-based liquid nutritional formulas (simulating enteral formulas) were subjected to steam injection ultra-high-temperature treatment or in-can sterilization, and the formulas were investigated by proteomic methods and in vitro and in vivo digestion assays. Proteomic analyses revealed that in-can sterilization resulted in higher signals for N(ε)-carboxymethyllysine and dephosphorylation of Ser residues in major milk proteins than in steam-injected formula, reflecting the more severe thermal process of in-can sterilization. In vitro and in vivo digestion assays indicated that steam injection improved protein digestibility, supposedly by denaturation, while the improvement seemed to be overwhelmed by formation of aggregates that showed resistance to digestion in in-can sterilized formula. Adverse effects of heat treatment on protein digestibility are more likely to be manifested in milk-based formulas than in cow's milk. Although the differences might be of limited significance in terms of amino acid bioavailability, these results emphasize the importance of protein quality of raw materials and selection of heating processes. PMID:26161498

  15. Protein quality as determined by the Digestible Indispensable Amino Acid Score: evaluation of factors underlying the calculation.

    Wolfe, Robert R; Rutherfurd, Shane M; Kim, Il-Young; Moughan, Paul J

    2016-09-01

    The Food and Agriculture Organization of the United Nations recently recommended the adoption of a new and improved scoring system (Digestible Indispensable Amino Acid Score [DIAAS]) to quantify dietary protein quality. The DIAAS is based on the relative digestible content of the indispensable amino acids (IAAs) and the amino acid requirement pattern. Factors involved in calculation of the DIAAS include: use of the content and profile of IAAs as the basis for quality; methods for determination of the protein and amino acid content of the protein source; accuracy of individual requirement values for IAAs; normalization of IAA requirements by the estimated average requirement for protein; and basing the DIAAS on the true ileal digestibility of each IAA in the test protein. This review outlines the rationale for including each of these factors in the calculation of the DIAAS and describes associated potential errors. PMID:27452871

  16. In Vitro Determination of Wheat Dry Matter Solubility and Protein Digestibility

    Rodica Căpriţă

    2012-10-01

    Full Text Available The objectives of the present study were to determine the in vitro dry matter (DM solubility and protein digestibility (PD of wheat grains. Two experiments were conducted. In experiment 1, samples were incubated for different time periods with pepsin, simulating gastric digestion, and in experiment 2, samples were digested following an in vitrotwo-step procedure, simulating gastric and small intestine digestion. DM solubility in gastric digestion showed an increase with the incubation time. DM solubility of wheat ranged in experiment 1 from 0.1532 g/g at 30 minutes digestion time, to 0.1714 g/g at 120 minutes digestion time. Samples showed higher DM solubility and PD after small intestine incubation than after gastric incubation. DM solubility increased with 16.67% and PD increased with 24.87% when gastric digestion was followed by 240 minutes intestinal digestion.

  17. Proteins of Bacuri almonds: nutritional value and in vivo digestibility

    Magalli Costa Barbosa Lima e Silva

    2014-03-01

    Full Text Available Bacuri (Scheelea phalerata Mart. is a type of palm fruit tree widely distributed in the Brazilian Cerrado. The objective of this paper was to study the almonds of bacuri, in their form in natura and processed, focusing on their nutritional value through the profile of amino acids, anti-nutritional factors and in vivo digestibility. Raw and toasted samples of the almond presented a high level of proteins and fiber. Proteins of raw bacuri almond showed no limiting amino acid when compared to the ones recommended by FAO/WHO, and histidine was the most limiting essential amino acid in the toasted almonds. The almond of bacuri does not present anti- nutritional factors. In an assay with rats fed with control (casein, tests (bacuri almond flours and aproteic diets, we verified the quantity of ration ingested and body weight gain, determining the urinary and metabolic nitrogen. Rats treated with the test diets presented inferior values of True Digestibility (DV, (82.9 and 72.3%, respectively for the raw and toasted almonds when compared to the control group (92.3%. The raw bacuri almond presented a superior nutritional value to the one found in the toasted almond.

  18. Susceptibility of sweet potato (Ipomoea batatas) peel proteins to digestive enzymes

    Maloney, Katherine P; Truong, Van-Den; Allen, Jonathan C.

    2014-01-01

    Sweet potato proteins have been shown to possess antioxidant and antidiabetic properties in vivo. The ability of a protein to exhibit systemic effects is somewhat unusual as proteins are typically susceptible to digestive enzymes. This study was undertaken to better understand how digestive enzymes affect sweet potato proteins. Two fractions of industrially processed sweet potato peel, containing 6.8% and 8.5% protein and 80.5% and 83.3% carbohydrate, were used as a source of protein. Sweet p...

  19. Growth of Nile tilapia post-larvae from broodstock fed diet with different levels of digestible protein and digestible energy

    Silia Maria de Negreiros Sousa

    2013-08-01

    Full Text Available This study was carried out to evaluate the influence of different levels of digestible energy and digestible protein in diets of Nile tilapia (Oreochromis niloticus broodstock on offspring growth during sex reversal stage. A total of 2,700 post-larvae (8.2±0.001 mg derived from breeders fed nine diets with distinct levels of digestible protein (28, 34 and 40% DP and digestible energy (2,800; 3,400; and 4,000 kcal DE.kg-1 were stored in twenty-seven 70 L tanks. After 30 days of growth, their average final weight (AFW, g, average weight gain (AWG, g, final standard length (SL, cm, condition factor (CF, specific growth rate (SGR, %/day, stock uniformity (UNI, %, survival (SUR, % and sex reversal rate (SRR, % were measured. Although female nutrition is thought to influence the performance or quality of progeny during early life stages, no influence of diets supplied to broodstock was detected on any parameter. Nonetheless, the offspring presented commercially satisfactory growth rates. Thus, diets containing 28% of digestible protein and 2,800 kcal of digestible energy.kg of diet-1 can be used to feed Nile tilapia broodstock without jeopardizing offspring performance during the sex reversal phase.

  20. Digestibility Improvement of Sorted Waste with Alkaline Hydrothermai Pretreatment

    WANG Hao; WANG Hongtao; LU Wenjing; ZHAO Yan

    2009-01-01

    The digestibility of sorted municipal solid waste (MSW) is often limited by the high content of structured green waste. The objectives of this study are to investigate the effect of alkaline hydrothermal pretreatment on the anaerobic digestion of sorted waste and to analyze the biogas production of different parts of the waste. The waste was hydrothermally pretreated in a dilute alkali solution. The hydrolysis product was then incubated in a 500 mL saline bottle to determine the biochemical methane potential (BMP) under mesophilic anaerobic conditions. The optimum hydrothermal condition was 170℃ at 4 g NaOH/100 g solid for one hour. The concentration of chemical oxygen demand (COD) was 13 936 mg/L and the methane yield was 164 mL/g volatile solid (VS) for 6 days incubation at the optimum conditions. The biogas production was increased more than 50% over the control, with the methane conversion ratio on a carbon basis enhanced to 30.6%. The organic part of the sorted waste was mainly kitchen garbage and leaves. Model kitchen garbage completely liquified at 130℃ for one hour had a methane yield of 276 mL/g VS. The alkali addition slightly enhanced the hydrolyzation rate and methane yield. The biogas potential of leaves was improved by pre-treatment at above 150℃ under alkaline conditions.

  1. Trypsin immobilization in ordered porous polymer membranes for effective protein digestion.

    Qiao, Juan; Kim, Jin Yong; Wang, Yuan Yuan; Qi, Li; Wang, Fu Yi; Moon, Myeong Hee

    2016-02-01

    Fast and effective protein digestion is a vital process for mass spectrometry (MS) based protein analysis. This study introduces a porous polymer membrane enzyme reactor (PPMER) coupled to nanoflow liquid chromatography-tandem MS (nLC-ESI-MS/MS) for on-line digestion and analysis of proteins. Poly (styrene-co-maleic anhydride) (PS-co-MAn) was fabricated by the breath figure method to make a porous polymer membrane in which the MAn group was covalently bound to enzyme. Based on this strategy, microscale PPMER (μPPMER) was constructed for on-line connection with the nLC-ESI-MS/MS system. Its capability for enzymatic digestion with bovine serum albumin (BSA) was evaluated with varied digestion periods. The on-line proteolysis of BSA and subsequent analysis with μPPMER-nLC-ESI-MS/MS revealed that peptide sequence coverage increased from 10.3% (digestion time 10 min) to 89.1% (digestion time 30 min). μPPMER can efficiently digest proteins due to the microscopic confinement effect, showing its potential application in fast protein identification and protease immobilization. Applications of on-line digestion using μPPMER with human plasma and urinary proteome samples showed that the developed on-line method yielded equivalent or better performance in protein coverage and identified more membrane proteins than the in-solution method. This may be due to easy accommodation of hydrophobic membrane proteins within membrane pores. PMID:26772135

  2. Porous layer open tubular columns with immobilized trypsin for protein digestion

    Knob, R.

    2013-01-01

    We have developed a monolithic porous layer open tubular (PLOT) column with immobilized trypsin for protein digestion. The PLOT column was prepared in a 10 (mikro)m ID fused silica capillary. Trypsin was immobilized on the monolithic surface and the developed enzyme reactor was used for protein digestion followed by on-line ESI/MS analysis.

  3. Improvement of the digestion of cattle slurry via the process of co-digestion

    Cornell, Marie

    2011-01-01

    The use of maize (Zea mays) as a co-substrate with cattle slurry for the production of biogas was investigated in detail by running several long term digestion trials under different operational conditions in laboratory scale semi-continuous digesters. These conditions included varying the organic loading rate (OLR) from 2 to 6 g VS l-1 d-1, the proportion of cattle slurry from 25 to 100%, and the recirculating regime. Results indicated that the co-digestion of cattle slurry and maize was ...

  4. Improving biogas quality and methane yield via co-digestion of agricultural and urban biomass wastes.

    Poulsen, Tjalfe G; Adelard, Laetitia

    2016-08-01

    Impact of co-digestion versus mono-digestion on biogas and CH4 yield for a set of five biomass materials (vegetable food waste, cow dung, pig manure, grass clippings, and chicken manure) was investigated considering 95 different biomass mixes of the five materials under thermophilic conditions in bench-scale batch experiments over a period of 65days. Average biogas and CH4 yields were significantly higher during co-digestion than during mono-digestion of the same materials. This improvement was most significant for co-digestion experiments involving three biomass types, although it was independent of the specific biomasses being co-digested. Improvement in CH4 production was further more prominent early in the digestion process during co-digestion compared to mono-digestion. Co-digestion also appeared to increase the ultimate CH4/CO2 ratio of the gas produced compared to mono-digestion although this tendency was relatively weak and not statistically significant. PMID:27256782

  5. Dietary N,N-dimethylglycine supplementation improves nutrient digestibility and attenuates pulmonary hypertension syndrome in broilers.

    Kalmar, I D; Cools, A; Buyse, J; Roose, P; Janssens, G P J

    2010-12-01

    N,N-dimethylglycine (DMG) is an intermediary metabolite in cellular choline and betaine metabolism. The present trial aimed to evaluate the effect of dietary DMG on nutrient digestibility and development of pulmonary hypertension syndrome in broilers. A total of 64 14-day-old broiler hens (Ross-308) were raised until age 40 days under cold environmental temperature conditions (15 °C) and were fed a high energy feed in order to incite pulmonary hypertension. Birds were randomly assigned to two groups of which each group had eight replicate pens of four birds each. Test diets contained 0 or 167 mg Na-DMG (Taminizer(®) D; Taminco N.V., Ghent, Belgium)/kg feed. N,N-dimethylglycine supplementation resulted in a significant improvement in apparent faecal digestibility of crude protein and nitrogen-free extract. Further, fulminant ascites was numerically lowered by DMG and incidence of pulmonary hypertension decreased significantly from 44.8% in the control group to 14.6% in the DMG group. Finally, fasted plasma level of non-esterified fatty acids (NEFA) was twofold in the control group in relation to the DMG group. In conclusion, these data demonstrate beneficial effects of DMG on digestibility of non-fat fractions, on fat metabolism and on progression towards broiler ascites syndrome. PMID:20662970

  6. High efficiency and quantitatively reproducible protein digestion by trypsin-immobilized magnetic microspheres

    Sun, Liangliang; Li, Yihan; Yang, Ping; Zhu, Guijie; Dovichi, Norman J.

    2011-01-01

    Aldehyde- and NHS-activated magnetic microspheres were used to immobilize trypsin (CHO-trypsin and NHS-trypsin), and their performance for protein digestion was evaluated by reversed phase liquid chromatography-electrospray ionization-tandem mass spectrometry using an LTQ Orbitrap Velos instrument. NHS-trypsin provided greater sequence coverage and identified more peptides for the digestion of bovine serum albumin. A one-minute digestion at room temperature using the immobilized trypsin also ...

  7. Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis

    Leon, Ileana R; Schwämmle, Veit; Jensen, Ole N; Sprenger, Richard Remko

    2013-01-01

    combination of qualitative and quantitative LC-MS/MS methods and statistical data analysis. In contrast to previous studies we employed both standard qualitative as well as data-independent quantitative workflows to systematically assess trypsin digestion efficiency and bias using mitochondrial protein...... protocols and replicates, with an average 40% protein sequence coverage and an average of 11 peptides identified per protein. Systematic quantitative and statistical analysis of physicochemical parameters demonstrated that deoxycholate-assisted in-solution digestion combined with phase transfer allows for......The majority of mass spectrometry-based protein quantification studies uses peptide-centric analytical methods and thus strongly relies on efficient and unbiased protein digestion protocols for sample preparation. We present a novel objective approach to assess protein digestion efficiency using a...

  8. Susceptibility of sweet potato (Ipomoea batatas) peel proteins to digestive enzymes.

    Maloney, Katherine P; Truong, Van-Den; Allen, Jonathan C

    2014-07-01

    Sweet potato proteins have been shown to possess antioxidant and antidiabetic properties in vivo. The ability of a protein to exhibit systemic effects is somewhat unusual as proteins are typically susceptible to digestive enzymes. This study was undertaken to better understand how digestive enzymes affect sweet potato proteins. Two fractions of industrially processed sweet potato peel, containing 6.8% and 8.5% protein and 80.5% and 83.3% carbohydrate, were used as a source of protein. Sweet potato proteins were incubated with pepsin, trypsin, and chymotrypsin and protein breakdown was visualized with SDS-PAGE. After pepsin digestion, samples were assayed for amylase inhibitory activity. Sporamin, the major storage protein in sweet potatoes, which functions as a trypsin inhibitor as well, exhibited resistance to pepsin, trypsin, and chymotrypsin. Sporamin from blanched peel of orange sweet potatoes was less resistant to pepsin digestion than sporamin from outer peel and from extract of the white-skinned Caiapo sweet potato. Trypsin inhibitory activity remained after simulated gastric digestion, with the Caiapo potato protein and peel samples exhibiting higher inhibitory activity compared to the blanched peel sample. Amylase and chymotrypsin inhibitory activity was not present in any of the samples after digestion. PMID:25473492

  9. Strategies to improve anaerobic digestion of wastes with especial attention to lignocellulosic substrates

    Fonoll Almansa, Xavier

    2015-01-01

    The energy demand increase and the generation of wastes is being the major problem regarding the next generation sustainability. Both problems can be corrected through the implementation of anaerobic digestion, a waste treatment technology able to produce electricity, heat and a fertilizer. The anaerobic co-digestion between two wastes with complementary characteristics has been widely studied to improve the methane production in anaerobic digesters. However, to increase the methane productio...

  10. Update: The Digestion and Absorption of Carbohydrate and Protein: Role of the Small Intestine.

    Leese, H. J.

    1984-01-01

    Discusses the role of the small intestine in the digestion and absorption of carbohydrates and proteins. Indicates as outdated the view that these materials must be broken down to monomeric units before absorption and that the gut secretes a mixture of digestive juices which brings about absorption. (JN)

  11. Performance and digestion by steers grazing tall fescue and supplemented with energy and protein.

    Elizalde, J C; Cremin, J D; Faulkner, D B; Merchen, N R

    1998-06-01

    We studied the effects of different levels of protein and energy supplementation on BW gains and sites of nutrient digestion in steers grazing the primary growth of endophyte-infected tall fescue (Festuca arundinacea Schreb cv. Kentucky 31). Angus steers (n = 168; mean BW = 246.8 +/- 15.0 kg) grazed tall fescue without supplementation (C) or were supplemented with 1.4 kg/d of cracked corn (CC1), 1.4 kg/d of corn gluten feed (CGF1), 2.8 kg/d of CC (CC2), 2.8 kg/d of CGF (CGF2), or .7 kg/d of cornstarch and .7 kg/d of corn gluten meal (CS-CGM) during an 85-d period in a randomized complete block design. Supplemented steers (S) had a higher (P = .03) ADG than the control steers (.64 vs .74 kg/d). There was an interaction (P = .02) between supplement type and level. Supplementation during the grazing period had no effect on subsequent feedlot ADG (average 1.3 kg/d). In a digestion study, Angus x Simmental steers (n = 4; 412 +/- 20.4 kg) fitted with cannulas in the esophagus, rumen, and duodenum grazed tall fescue (C), C + 3.1 kg/d CGF, C + 3.1 kg/d of cracked corn (CC), or C + 1.4 kg/d CS-CGM over four experimental periods in a Latin square design. The ruminal ammonia nitrogen concentration tended to be higher (P .10) among treatments. Duodenal N flows and efficiencies of net ruminal microbial protein synthesis were not different (P > .10) among treatments. Supplementation of steers grazing primary growth of tall fescue improved animal gain but did not have a great effect on ruminal fermentation, OM digestion, or net ruminal microbial protein synthesis. PMID:9655590

  12. Influence of dietary protein content and source on colonic fermentative activity in dogs differing in body size and digestive tolerance.

    Nery, J; Goudez, R; Biourge, V; Tournier, C; Leray, V; Martin, L; Thorin, C; Nguyen, P; Dumon, H

    2012-08-01

    Low-consistency, high-moisture feces have been observed in large dogs (Canis lupus familiaris), compared with small dogs, and particularly in sensitive breeds (e.g., German Shepherd dogs). The aim of this work was to determine if greater colonic protein fermentation is responsible for poorer fecal quality in large sensitive dogs. Twenty-seven bitches were allotted to 4 groups based on size and digestive sensitivity: small, medium, large tolerant, and large sensitive. Five experimental diets varying in protein source [highly digestible wheat gluten (WG) vs. medium digestible poultry meal (PM), and protein concentration from 21.4 to 21.6 (LP) to 38.2 to 39.2% CP (HP)] were tested. Diets were fed for 14 d and followed by a 12-d transition period. Digestive fermentation by-products were investigated in fresh stools [ammonia, phenol, indole, and short chain fatty acids including acetate, propionate, and butyrate (C2 to C4 SCFA), branched-chain fatty acids (BCFA), and valerate] and in urine (phenol and indole). Bacterial populations in feces were identified. The PM diets resulted in greater fecal concentrations of ammonia, BCFA, valerate, indole, and C2 to C4 SCFA than WG diets (P = 0.002, P fermentation products in feces together with improved fecal quality in dogs, especially in large sensitive ones. Poor fecal quality in large sensitive dogs could be partly related to the pattern of protein fermentation in the hindgut. PMID:22328724

  13. Digestion kinetics of potato protein isolates in vitro and in vivo.

    He, Tao; Spelbrink, Robin E J; Witteman, Ben J; Giuseppin, Marco L F

    2013-11-01

    Recently, an industrial process was developed to isolate native protein fractions from potato: a high (HMW) and a low (LMW) molecular weight fraction. Digestion kinetics of HMW and LMW was studied in vitro and in vivo and compared with reference proteins. Under simulated conditions, highest digestion was found for whey protein, followed by soy, pea, HMW, casein and LMW. Ingestion of 20 g of proteins by eight healthy subjects (following a randomized, double-blind, cross-over design) induced a slow and moderate increase with HMW and LMW, while a peaked and high increase with whey protein, in postprandial plasma amino acid levels. Casein gave a similar profile as HMW, with higher levels. Contrary to whey and casein, HMW and LMW did not result in any changes in plasma insulin or glucose levels. This study provides insights in digestion of native potato protein isolates to assist their use as protein sources in food applications. PMID:23713493

  14. Compact structure and proteins of pasta retard in vitro digestive evolution of branched starch molecular structure.

    Zou, Wei; Sissons, Mike; Warren, Frederick J; Gidley, Michael J; Gilbert, Robert G

    2016-11-01

    The roles that the compact structure and proteins in pasta play in retarding evolution of starch molecular structure during in vitro digestion are explored, using four types of cooked samples: whole pasta, pasta powder, semolina (with proteins) and extracted starch without proteins. These were subjected to in vitro digestion with porcine α-amylase, collecting samples at different times and characterizing the weight distribution of branched starch molecules using size-exclusion chromatography. Measurement of α-amylase activity showed that a protein (or proteins) from semolina or pasta powder interacted with α-amylase, causing reduced enzymatic activity and retarding digestion of branched starch molecules with hydrodynamic radius (Rh)protein(s) was susceptible to proteolysis. Thus the compact structure of pasta protects the starch and proteins in the interior of the whole pasta, reducing the enzymatic degradation of starch molecules, especially for molecules with Rh>100nm. PMID:27516291

  15. Investigating the fate of activated sludge extracellular proteins in sludge digestion using sodium dodecyl sulfate polyacrylamide gel electrophoresis.

    Park, Chul; Helm, Richard F; Novak, John T

    2008-12-01

    The fate of activated sludge extracellular proteins in sludge digestion was investigated using three different cation-associated extraction methods and sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Extraction methods used were the cation exchange resin (CER) method for extracting calcium (Ca2+) and magnesium (Mg2+), sulfide extraction for removing iron, and base treatment (pH 10.5) for dissolving aluminum. Extracellular polymeric substances extracted were then subjected to SDS-PAGE, and the resultant protein profiles were examined before and after sludge digestion. The SDS-PAGE results showed that three methods led to different SDS-PAGE profiles for both undigested and digested sludges. The results further revealed that CER-extracted proteins remained mainly undegraded in anaerobic digestion, but were degraded in aerobic digestion. While the fate of sulfide- and base-extracted proteins was not clear for aerobic digestion, their changes in anaerobic digestion were elucidated. Most sulfide-extracted proteins were removed by anaerobic digestion, while the increase in protein band intensity and diversity was observed for base-extracted proteins. These results suggest that activated sludge flocs contain different fractions of proteins that are distinguishable by their association with certain cations and that each fraction undergoes different fates in anaerobic and aerobic digestion. The proteins that were resistant to degradation and generated during anaerobic digestion were identified by liquid chromatography tandem mass spectrometry. Protein identification results and their putative roles in activated sludge and anaerobic digestion are discussed in this study. PMID:19146099

  16. Accelerated protein digestion and amino acid absorption after Roux-en-Y gastric bypass

    Bojsen-Møller, Anna Kirstine; Jacobsen, Siv H; Dirksen, Carsten;

    2015-01-01

    BACKGROUND: Roux-en-Y gastric bypass (RYGB) involves exclusion of major parts of the stomach and changes in admixture of gastro-pancreatic enzymes, which could have a major impact on protein digestion and amino acid absorption. OBJECTIVE: We investigated the effect of RYGB on amino acid appearance...... RYGB. CONCLUSIONS: RYGB accelerates caseinate digestion and amino acid absorption, resulting in faster and higher but more transient postprandial elevation of plasma amino acids. Changes are likely mediated by accelerated intestinal nutrient entry and clearly demonstrate that protein digestion is not...

  17. Prebiotics affect nutrient digestibility but not faecal ammonia in dogs fed increased dietary protein levels.

    Hesta, M; Roosen, W; Janssens, G P J; Millet, S; De Wilde, R

    2003-12-01

    An increased protein content and less digestible protein sources in the diet can induce bad faecal odour. The present study investigated the effect of adding prebiotics to dog diets enriched with animal-derived protein sources on apparent digestibilities and faecal ammonia concentration. In three subsequent periods eight healthy beagle dogs were fed a commercial dog diet that was gradually supplemented by up to 50 % with meat and bone meal (MBM), greaves meal (GM) or poultry meal (PM) respectively. Afterwards, 3 % fructo-oligosaccharides or 3 % isomalto-oligosaccharides were substituted for 3 % of the total diet. Supplementation with animal-derived protein sources did not decrease the apparent N digestibility significantly but oligosaccharides did. On the other hand the bacterial N content (% DM) in the faeces was highest in the oligosaccharide groups followed by the protein-supplemented groups and lowest in the control groups. When the apparent N digestibility was corrected for bacterial N no significant differences were noted anymore except for the GM group where the corrected N digestibility was still lower after oligosaccharide supplementation. The amount of faecal ammonia was significantly increased by supplementing with protein or oligosaccharides in the MBM and GM groups but not in the PM group. When apparent N digestibility is interpreted, a correction for bacterial N should be taken into account, especially when prebiotics are added to the diet. Oligosaccharides did not reduce the faecal ammonia concentrations as expected. PMID:14641959

  18. Proteolytic Digestion and TiO2 Phosphopeptide Enrichment Microreactor for Fast MS Identification of Proteins

    Deng, Jingren; Lazar, Iulia M.

    2016-04-01

    The characterization of phosphorylation state(s) of a protein is best accomplished by using isolated or enriched phosphoprotein samples or their corresponding phosphopeptides. The process is typically time-consuming as, often, a combination of analytical approaches must be used. To facilitate throughput in the study of phosphoproteins, a microreactor that enables a novel strategy for performing fast proteolytic digestion and selective phosphopeptide enrichment was developed. The microreactor was fabricated using 100 μm i.d. fused-silica capillaries packed with 1-2 mm beds of C18 and/or TiO2 particles. Proteolytic digestion-only, phosphopeptide enrichment-only, and sequential proteolytic digestion/phosphopeptide enrichment microreactors were developed and tested with standard protein mixtures. The protein samples were adsorbed on the C18 particles, quickly digested with a proteolytic enzyme infused over the adsorbed proteins, and further eluted onto the TiO2 microreactor for enrichment in phosphopeptides. A number of parameters were optimized to speed up the digestion and enrichments processes, including microreactor dimensions, sample concentrations, digestion time, flow rates, buffer compositions, and pH. The effective time for the steps of proteolytic digestion and enrichment was less than 5 min. For simple samples, such as standard protein mixtures, this approach provided equivalent or better results than conventional bench-top methods, in terms of both enzymatic digestion and selectivity. Analysis times and reagent costs were reduced ~10- to 15-fold. Preliminary analysis of cell extracts and recombinant proteins indicated the feasibility of integration of these microreactors in more advanced workflows amenable for handling real-world biological samples.

  19. Improving methodology in open vessel digestion with a graphite heating block (T7)

    Full text: Open block digestion systems have been very popular in environmental analysis over the past decades, but have consistently suffered from the major drawback of their sensitivity against corrosion and the subsequent risk of contamination. Therefore block digestion systems have not been considered state-of-the-art technology in trace and ultra trace sample preparation. Graphite block digestion systems are well established in North America and are recently becoming more frequently considered in Europe. These systems overcome the deficiencies of the traditional systems, made from stainless steel or aluminum, because the block is manufactured from graphite and typically coated with a fluoro-polymer to present the possibility metallic contamination from the surface of the system during the handling of the samples. Graphite block systems present an alternative to the current mainstream technology of open and closed vessel microwave assisted digestion systems, as they allow large numbers of samples to be digested simultaneously, thus overcoming one of the major weaknesses of closed vessel systems. More recently a number of improvements in the technology has been developed for graphite block digestion systems and studies have been performed to evaluate the effects of such improvements. The paper presented will deal with the technological improvements: monitoring and control of sample temperature vs. monitoring of block temperature, elimination of cross contamination effects during open vessel block digestion, evaporation of samples for pre-concentration or multiple digestion steps, addressing the needs of various labs and applications for block digesters. The effects of those developments will be discussed; application examples and finally an outlook into possible future trends for graphite block digestion systems will be given. (author)

  20. Tissular and soluble miRNAs for diagnostic and therapy improvement in digestive tract cancers.

    Albulescu, Radu; Neagu, Monica; Albulescu, Lucian; Tanase, Cristiana

    2011-01-01

    Digestive cancers (e.g., gastric, colorectal, pancreatic or hepatocarcinoma) are among the most frequently reported cancers in the world, and are characterized by invasivity, metastatic potential and poor outcomes. This group includes some of the most critical cancers (among them, are those ranked second to forth in cancer-related mortality) and, despite all sustained efforts, they maintain a profile of low survival rates and lack successful therapies. Discovery of biomarkers that improve disease characterization may make optimized or personalized therapy possible. Novel biomarkers are expected to provide, hopefully, less-invasive or noninvasive diagnostic tools that make possible earlier detection of disease. Also, they may provide a more reliable selection instrument in the drug discovery process. miRNAs, short noncoding RNAs, have emerged in the last few years as significant regulators of cellular activities, controlling protein expression at the post-transcriptional level, with a significant implication in pathology in general and, of most relevance, in cancers. Deregulation of miRNA expression levels and some genetic alterations were demonstrated in various cancers, including digestive cancers. Investigations in tissue samples have provided a considerable amount of knowledge, identifying altered expressions of miRNAs associated with tumorigenesis and tumor progression. Overexpression of some tumor-inducing or tumor-promoting miRNAs was demonstrated, as well as the downregulation of tumor-suppressor miRNAs. Both individual miRNAs, as well as sets of multiple miRNAs, were set up as candidate biomarkers for diagnostics or monitoring, offering relevant insights into tumorigenic mechanisms. Circulating miRNAs were demonstrated as valuable instruments in tumor diagnosis and the prognosis of digestive cancers (affecting the esophagus, stomach, intestine, colorectum, liver and pancreas), and are being investigated thoroughly in order to generate and validate less

  1. Experimental co-digestion of corn stalk and vermicompost to improve biogas production

    Anaerobic co-digestion of corn stalk and vermicompost (VC) as well as mono-digestion of corn stalk were investigated. Batch mono-digestion experiments were performed at 35 ± 1 oC and initial total solid loading (TSL) ranged from 1.2% to 6.0%. Batch co-digestion experiments were performed at 35 ± 1 oC and initial TSL of 6% with VC proportions ranged from 20% to 80% of total solid (TS). For mono-digestion of corn stalk, a maximum methane yield of 217.60 ± 13.87 mL/g TSadded was obtained at initial TSL of 4.8%, and acidification was found at initial TSL of 6.0% with the lowest pH value of 5.10 on day 4. Co-digestion improved the methane yields by 4.42-58.61% via enhancing volatile fatty acids (VFAs) concentration and pH value compared with mono-digestion of corn stalk. The maximum biogas yield of 410.30 ± 11.01 mL/g TSadded and methane yield of 259.35 ± 13.85 mL/g TSadded were obtained for 40% VC addition. Structure analysis by X-ray diffractometry (XRD) showed that the lowest crystallinity of 35.04 of digested corn stalk was obtained from co-digestion with 40% VC, which decreased 29.4% compared to 49.6 obtained from un-treated corn stalk. It is concluded that co-digestion with VC is beneficial for improving biodigestibility and methane yield from corn stalk.

  2. Analytical criteria for predicting apparent digestibility of soybean protein in preruminant calves.

    Lalles, J P; Tukur, H M; Toullec, R; Miller, B G

    1996-03-01

    A series of experiments on the use of soybean as a protein source in milk replacers for veal calves was undertaken to determine the relationships between the physicochemical and antinutritional properties and apparent digestibilities of nine soybean products. Soybean provided between 58 and 71% of dietary CP, and skim milk or whey powder provided the remainder. Soybean products were analyzed for CP, native protein, aggregated protein, carbohydrate-linked protein, peptides, antitryptic activity, and immunoreactivity of lectin, glycinin, alpha-conglycinin, and beta-conglycinin. The apparent digestibility of N calculated for soybean protein varied between 59 and 84%. Simple linear correlations were significant between apparent digestibility of soybean N and concentrations of native protein, antitryptic activity, glycinin, alpha-conglycinin, and beta-conglycinin. However, only variation in antitryptic activity, alpha-conglycinin, and beta-conglycinin contributed significantly to an explanation for the variation in apparent digestibility of soybean N in a multiple linear equation. Under our experimental conditions, beta-conglycinin was the best predictor of digestibility of soybean N. Antitryptic activity became the best predictor when soybean products had no detectable beta-conglycinin. PMID:8708110

  3. Cooking Chicken Breast Reduces Dialyzable Iron Resulting from Digestion of Muscle Proteins

    Gokhale, Aditya S.; Mahoney, Raymond R.

    2014-01-01

    The purpose of this research was to study the effect of cooking chicken breast on the production of dialyzable iron (an in vitro indicator of bioavailable iron) from added ferric iron. Chicken breast muscle was cooked by boiling, baking, sautéing, or deep-frying. Cooked samples were mixed with ferric iron and either extracted with acid or digested with pepsin and pancreatin. Total and ferrous dialyzable iron was measured after extraction or digestion and compared to raw chicken samples. For uncooked samples, dialyzable iron was significantly enhanced after both extraction and digestion. All cooking methods led to markedly reduced levels of dialyzable iron both by extraction and digestion. In most cooked, digested samples dialyzable iron was no greater than the iron-only (no sample) control. Cooked samples showed lower levels of histidine and sulfhydryls but protein digestibility was not reduced, except for the sautéed sample. The results showed that, after cooking, little if any dialyzable iron results from digestion of muscle proteins. Our research indicates that, in cooked chicken, residual acid-extractable components are the most important source of dialyzable iron. PMID:26904627

  4. Centrifugal Methods and Devices for Rapid In-Gel Digestion of Proteins

    Lazarev, Alexander V.; Rejtar, Tomas; Dai, Shujia; Karger, Barry L.

    2009-01-01

    Modern proteomic research frequently relies upon separation of proteins in a polyacrylamide gel matrix followed by in-gel enzymatic digestion and extraction of peptides for subsequent analysis by mass spectrometry. In this work, we propose a novel semi-automated method of mechanical processing of gel bands by passing these bands through a specially designed centrifugal device termed a Gel Shredder prior to digestion and extraction of peptides. Such a device allows integrated washing, destaini...

  5. Super-atmospheric pressure ionization mass spectrometry and its application to ultrafast online protein digestion analysis.

    Chen, Lee Chuin; Ninomiya, Satoshi; Hiraoka, Kenzo

    2016-06-01

    Ion source pressure plays a significant role in the process of ionization and the subsequent ion transmission inside a mass spectrometer. Pressurizing the ion source to a gas pressure greater than atmospheric pressure is a relatively new approach that aims to further improve the performance of atmospheric pressure ionization sources. For example, under a super-atmospheric pressure environment, a stable electrospray can be sustained for liquid with high surface tension such as pure water, because of the suppression of electric discharge. Even for nano-electrospray ionization (nano-ESI), which is known to work with aqueous solution, its stability and sensitivity can also be enhanced, particularly in the negative mode when the ion source is pressurized. A brief review on the development of super-atmospheric pressure ion sources, including high-pressure electrospray, field desorption and superheated ESI, and the strategies to interface these ion sources to a mass spectrometer will be given. Using a recent ESI prototype with an operating temperature at 220 °C under 27 atm, we also demonstrate that it is possible to achieve an online Asp-specific protein digestion analysis in which the whole processes of digestion, ionization and MS acquisition could be completed on the order of a few seconds. This method is fast, and the reaction can even be monitored on a near-real-time basis. Copyright © 2016 John Wiley & Sons, Ltd. PMID:27270863

  6. Changes in antioxidant and antiinflammatory activity of black bean (Phaseolus vulgaris L.) protein isolates due to germination and enzymatic digestion.

    López-Barrios, Lidia; Antunes-Ricardo, Marilena; Gutiérrez-Uribe, Janet A

    2016-07-15

    Germination is an inexpensive process to improve the nutritional properties of legumes. The effect of germinating black bean seeds on the production of cotyledon protein hydrolysates (CPH) with antioxidant and antiinflammatory activities was analyzed in this research. After simulated enzymatic digestion, the oxygen radical absorbance capacity (ORAC) of CPH obtained from germinated black beans was lower than that observed for raw cotyledons. There were no significant differences among CPH cellular antioxidant activities (CAA), except for the high CAA of the 120 min hydrolysate obtained from one day germinated black bean cotyledons. The most significant changes due to germination and enzymatic hydrolysis were observed for the inhibition of nitric oxide (NO) production in macrophages. The NO synthesis inhibition observed for raw CPH was reduced after simulated gastrointestinal digestion but for germinated samples the inhibition was doubled. Peptides derived from cell wall proteins produced during germination could be responsible of antiinflammatory activity. PMID:26948633

  7. Fast and efficient protein enzymatic digestion in proteomics

    Dyčka, Filip; Bobáľ, P.; Bobálová, Janette

    Koszeg, 2010. s. 49. ISBN 978-963-7067-20-4. [IMMS. Informal Meeting on Mass Spectrometry /28./. 02.05.2010-06.05.2010, Koszeg] R&D Projects: GA MŠk 1M0570; GA MŠk 1M06030; GA AV ČR IAA600040701 Institutional research plan: CEZ:AV0Z40310501 Keywords : digestion * microwave * ultrasonic * infrared radiation Subject RIV: CB - Analytical Chemistry, Separation

  8. Improvement of anaerobic digestion of municipal wastewater treatment plant sludges and lignocellulosic substrates in biogas production

    Kolbl, Sabina

    2014-01-01

    The aim of this doctoral dissertation was to improve the production of methane by mechanical and enzymatic pretreatments of organic substrates. For anaerobic digestion of different substrates and determination of biomethane potential, Automatic Methane Potential Test System (AMPTS II) device was used. AMPTS II is an analytical laboratory scale device used in measurements of ultra low speed production of biomethane produced during the anaerobic digestion of biodegradable substrates. Although b...

  9. High pressure processing of meat: effects on ultrastructure and protein digestibility.

    Kaur, Lovedeep; Astruc, Thierry; Vénien, Annie; Loison, Olivier; Cui, Jian; Irastorza, Marion; Boland, Mike

    2016-05-18

    The effects of high pressure processing (HPP, at 175 and 600 MPa) on the ultrastructure and in vitro protein digestion of bovine longissimus dorsi muscle meat were studied. HPP caused a significant change in the visual appearance and texture of the meat subjected to HPP at 600 MPa so that it appeared similar to cooked meat, unlike the meat subjected to HPP at 175 MPa that showed no significant visible change in the colour and texture compared to the raw meat. The muscles were subjected to digestion under simulated gastric conditions for 1 h and then under simulated small-intestinal conditions for a further 2 h. The digests were analysed using gel electrophoresis (SDS-PAGE) and ninhydrin assay for amino N. The effect of the acid conditions of the stomach alone was also investigated. Reduced SDS-PAGE results showed that pepsin-digested (60 min) HPP meats showed fewer proteins or peptides of high molecular weight than the pepsin-digested untreated meat, suggesting more breakdown of the parent proteins in HPP-treated meats. This effect was more pronounced in the muscles treated at 600 MPa. These results are in accordance with microscopy results, which showed greater changes in the myofibrillar structure after simulated gastric digestion of the sample processed at 600 MPa than at 175 MPa. Transmission electron microscopy also showed the presence of protein aggregates in the former sample, resulting probably from protein denaturation of sarcoplasmic proteins, in the subcellular space and between myofibrils; along with cell contraction (similar to that caused by heating) in the former. PMID:27143217

  10. Monolithic liquid-chromatography columns for protein analysisprotein digest separation and integrated systems

    van de Meent, M. H. M.

    2010-01-01

    The objectives of the research described in this thesis are to evaluate the applicability of both silica-based and polymeric monolithic columns for protein analysis. The first part describes investigations into the effects of column length and stationary-phase chemistry on the separation of protein digests. The second part is devoted to the development of LC based integrated systems for the separation and identification of protein mixtures.

  11. Serine proteinase of Renibacterium salmoninarum digests a major autologous extracellular and cell-surface protein.

    Rockey, D D; Turaga, P S; Wiens, G D; Cook, B A; Kaattari, S L

    1991-10-01

    Renibacterium salmoninarum is a pathogen of salmonid fish that produces large amounts of extracellular protein (ECP) during growth. A proteolytic activity present in ECP at elevated temperatures digested the majority of the proteins in ECP. This digestion was also associated with the loss of ECP immunosuppressive function. In vitro activity of the proteinase in ECP was temperature dependent: it was not detected in an 18-h digest at 4 and 17 degrees C but became readily apparent at 37 degrees C. Proteinase activity was detected at bacterial physiological temperatures (17 degrees C) in reactions incubated for several days. Under these conditions, digestion of partially purified p57, a major constituent of ECP and a major cell-surface protein, yielded a spectrum of breakdown products similar in molecular weight and antigenicity to those in ECP. This pattern of digestion suggests that most of the immunologically related constituents of ECP are p57 and its breakdown products. The proteolytic activity was sensitive to phenylmethylsulfonyl fluoride, methanol, and ethanol and to 10-min incubation at temperatures above 65 degrees C. Electrophoretic analysis of the proteinase on polyacrylamide gels containing proteinase substrates indicated the native form to be 100 kDa or greater. The enzyme was active against selected unrelated substrates only when coincubated with a denaturant (0.1% lauryl sulfate) and (or) a reducing agent (20 mM dithiothreitol). PMID:1777853

  12. Effect of Different Protein Levels On Nutrient Digestion Metabolism and Serum Biochemical Parameters in Calves

    LI Hui; DIAO Qi-yu; ZHANG Nai-feng; TU Yan; WANG Ji-feng

    2008-01-01

    The current study has been performed to examine the effects of different dietary protein levels on the growth,nutrient digestion and absorption,as well as biochemical parameters in calves.Nine healthy newborn calves were selected,randomly divided into 3 groups and fed 3 milk replacers with different protein levels(18,22,and 26%),respectively.Five period-digestion-metabolism trials were taken between 12-20,22-30,32-40,42-50,and 52-60 days after birth.All 3 groups showed a similar growth curve during 11 to 61 experimental days,however,the growth rate of the 22%crude protein(CP) group was 8.89%higher than that of the 18%CP group and 19.48%higher than that of the 26%CP group.respectively. The apparent digestibility of dry material(DM)declined gradually with age,whereas,the apparent digestibility of N,extract ether(EE)rose slightly.Compared to the 22%CP and 26%CP group,calves fed with 18%CP apparently had a lower digestibility than DM,EE,and nitrogen(N).The average apparent digestibilities of N were 69.39,75.36,and 74.55%, respectively.Both the apparent digestibility and retention of calcium(Ca)and phosphorus(P)were steady throughout the experiment,but the average apparent digestibility of P in the 26%CP group was only 63.83%,which was markedly lower than that of the 18%CP group(70.40%)and 22%CP group(69.73%).In addition,the sernm concentrations of total protein(TP),albumin(ALB),and globulin(GLOB)of the 22%CP group were higher than those in the 18%CP and 26%CP groups.The urea N(BUN)content in the 18%CP group,on the other hand,was significantly lower than that of the other two groups.The highest glucose(GLU)concentration was found in the 22%CP group(5.38 mmol L-1),at the end of the trials.The protein levels in the milk replacer affected the digestion metabolism of nutrition and the serum biochemical parameters of calves at different physiological phases.Calves fed with 22%CP milk replacer had a better growth performance than the other groups.

  13. Malting process optimization for protein digestibility enhancement in finger millet grain.

    Hejazi, Sara Najdi; Orsat, Valérie

    2016-04-01

    Finger millet (Eleusine coracana) is a nutritious, gluten-free, and drought resistant cereal containing high amounts of protein, carbohydrate, and minerals. However, bio-availability of these nutrients is restricted due to the presence of an excessive level of anti-nutrient components, mainly phytic acid, tannin, and oxalate. It has been shown that a well-designed malting/germination process can significantly reduce these anti-nutrients and consequently enhance the nutrient availability. In the present study, the effects of two important germination factors, duration and temperature, on the enhancement of in-vitro protein digestibility of finger millet were thoroughly investigated and optimized. Based on a central composite design, the grains were germinated for 24, 36, and 48 h at 22, 26, and 30 °C. For all factor combinations, protein, peptide, phytic acid, tannin, and oxalate contents were evaluated and digestibility was assessed. It was shown that during the malting/germinating process, both temperature and duration factors significantly influenced the investigated quantities. Germination of finger millet for 48 h at 30 °C increased protein digestibility from 74 % (for native grain) up to 91 %. Besides, it notably decreased phytic acid, tannin, and oxalate contents by 45 %, 46 %, and 29 %, respectively. Linear correlations between protein digestibility and these anti-nutrients were observed. PMID:27413219

  14. Amino acid digestibility of plant protein feed ingredients for growing pigs.

    Cotten, B; Ragland, D; Thomson, J E; Adeola, O

    2016-03-01

    Two experiments were designed to determine the N and AA digestibility of various protein sources (potato protein concentrate, soy protein concentrate, soy protein isolate, linseed meal, sunflower meal, cottonseed meal, canola meal, and camelina meal) fed to growing pigs. In each experiment, barrows were surgically fitted with a simple T-cannula at the distal ileum and fed 4 experimental diets and a N-free diet (NFD) on the basis of a replicated 5 × 2 crossover arrangement with 5 diets and 2 periods. For Exp. 1, 20 cannulated 25-kg barrows received potato concentrate, soy concentrate, soy isolate, and linseed meal. The apparent ileal digestibility (AID) and standardized ileal digestibility (SID) of N for potato concentrate, soy concentrate, and soy isolate were similar and greater than that for linseed meal ( camelina meal were fed to 42-kg barrows to determine their AID and SID of AA. The AID and SID of N and all AA were greatest for sunflower meal ( < 0.05), and canola meal had similar AID and SID of N, Met, Thr, Leu, and Val. The AID and SID of all essential AA, except for Met and Trp, were lowest for sunflower meal ( < 0.05). Cottonseed meal had lower AID and SID for Lys, Ile, Leu, Met, Thr, and Val compared with the other protein sources ( < 0.05). In conclusion, the digestibility of N and AA varies greatly among oilseed meals. PMID:27065269

  15. Improved Design of Anaerobic Digesters for Household Biogas Production in Indonesia: One Cow, One Digester, and One Hour of Cooking per Day

    Joseph G. Usack

    2014-01-01

    Full Text Available A government-sponsored initiative in Indonesia to design and implement low-cost anaerobic digestion systems resulted in 21 full-scale systems with the aim to satisfy the cooking fuel demands of rural households owning at least one cow. The full-scale design consisted of a 0.3 m diameter PVC pipe, which was operated as a conventional plug-flow system. The system generated enough methane to power a cooking stove for ∼1 h. However, eventual clogging from solids accumulation inside the bioreactor proved to be a major drawback. Here, we improved the digester configuration to remedy clogging while maintaining system performance. Controlled experiments were performed using four 9-L laboratory-scale digesters operated at a temperature of 27±1°C, a volatile solids loading rate of 2.0 g VS·L−1·day−1, and a 21-day hydraulic retention time. Two of the digesters were replicates of the original design (control digesters, while the other two digesters included internal mixing or effluent recycle (experimental digesters. The performance of each digester was compared based on methane yields, VS removal efficiencies, and steady-state solids concentrations during an operating period of 311 days. Statistical analyses revealed that internal mixing and effluent recycling resulted in reduced solids accumulation compared to the controls without diminishing methane yields or solids removal efficiencies.

  16. Ascorbate and Apple Phenolics Affect Protein Oxidation in Emulsion-Type Sausages during Storage and in Vitro Digestion.

    Rysman, Tine; Van Hecke, Thomas; De Smet, Stefaan; Van Royen, Geert

    2016-05-25

    The effect of sodium ascorbate and apple phenolics on the oxidative stability of emulsion-type sausages during storage and digestion was investigated. Emulsion-type sausages containing 0.05% sodium ascorbate or 3% freeze-dried apple pomace were subjected to chilled illuminated storage and subsequent in vitro digestion. Lipid oxidation was assessed as TBARS, and protein oxidation was evaluated as thiol oxidation, total carbonyls, and γ-glutamic and α-amino adipic semialdehyde. Proteolysis was measured after digestion to evaluate protein digestibility. The results suggest the presence of protein-ascorbate and protein-phenol interactions, which may decrease protein digestibility and may interfere with spectrophotometric methods for measuring oxidation. PMID:27133801

  17. Variation in crude protein and in vitro dry matter digestion of wheat forage

    Pasture bloat can be a serious problem for ruminant livestock grazing winter wheat (Triticum aestivum L.). Decreased gains with nonlethal bloat episodes, yearly herd deaths up to 2%, and the cost and risk of active intervention reduce profi ts. Wheat has high digestibility, crude protein (CP), and s...

  18. Thesis Abstract Bean (Phaseolus vulgaris L.) lines: chemical composition and protein digestibility.

    Mesquita, F R; Silva, M I A; Corrêa, A D

    2016-01-01

    The bean represents the main source of proteins for the low income populations, although the digestibility of those proteins is relatively low. Consequently, the programs of plant genetic breeding have been working on the search for new lines with higher protein levels. Thus, with the purpose of supplying information to the researchers, in this study, 21 bean (Phaseolus vulgaris L.) lines were analyzed for the centesimal and mineral composition, protein digestibility, phenolic compounds, and trypsin inhibitor. The entirely randomized experimental design was used with 21 treatments (lines) and three repetitions. All values were within the following ranges: 22.34 to 36.28 g crude protein/100 g dry matter (DM); 7.56 to 20.91 g neutral detergent fiber/100 g DM; 0.53 to 2.55 g fat/100 g DM and 2.97 to 4.87 g ashes/100 g DM. The levels of phosphorus, potassium, calcium, magnesium, and sulfur, in g/100 g DM, varied from 0.45 to 0.72; 1.51 to 2.48; 0.03 to 0.28; 0.18 to 0.34 and 0.28 to 0.45, respectively. Regarding copper, manganese, zinc and iron, the levels, in mg/kg DM, varied from 11.37 to 17.73; 14.93 to 28.90; 36.67 to 69.90 and 71.37 to 126.90, respectively. The in vitro protein digestibility varied from 18.03 to 48.32%. The levels of phenolic compounds varied from 0.28 to 1.08 mg acid tanic/100 g DM and the one of trypsin inhibitor from 59.93 to 151.07 trypsin inhibited units/mg DM. Among the lines with higher protein contents, "ESAL 569" (beige with brown stripe) presented the largest protein digestibility and considerable levels of minerals. "P-180" (beige with brown stripe) was one of the lines with higher crude protein contents and digestibilities, and also presented high levels for most of the minerals. No relation between protein digestibility and the contents of phenolic compounds or trypsin inhibitor was observed. PMID:27173357

  19. Denaturation and in Vitro Gastric Digestion of Heat-Treated Quinoa Protein Isolates Obtained at Various Extraction pH

    Ruiz, Geraldine Avila; Opazo-Navarrete, Mauricio; Meurs, Marlon; Minor, Marcel; Sala, Guido; Boekel, van, R.; Stieger, Markus; Janssen, Anja E.M.

    2016-01-01

    The aim of this study was to determine the influence of heat processing on denaturation and digestibility properties of protein isolates obtained from sweet quinoa (Chenopodium quinoa Willd) at various extraction pH values (8, 9, 10 and 11). Pretreatment of suspensions of protein isolates at 60, 90 and 120 °C for 30 min led to protein denaturation and aggregation, which was enhanced at higher treatment temperatures. The in vitro gastric digestibility measured during 6 h was lower for protein ...

  20. NUTRALYS® pea protein: characterization of in vitro gastric digestion and in vivo gastrointestinal peptide responses relevant to satiety

    Joost Overduin; Laetitia Guérin-Deremaux; Daniel Wils; Lambers, Tim T.

    2015-01-01

    Background: Pea protein (from Pisum sativum) is under consideration as a sustainable, satiety-inducing food ingredient. Objective: In the current study, pea-protein-induced physiological signals relevant to satiety were characterized in vitro via gastric digestion kinetics and in vivo by monitoring post-meal gastrointestinal hormonal responses in rats. Design: Under in vitro simulated gastric conditions, the digestion of NUTRALYS® pea protein was compared to that of two dairy proteins, slo...

  1. Cell surface molecules and fibronectin-mediated cell adhesion: effect of proteolytic digestion of membrane proteins

    1982-01-01

    Proteases have been used as a tool to investigate the role of surface molecules in fibronectin-mediated cell adhesion. Proteolytic digestion of membrane-proteins by pronase (1 mg/ml for 20 min at 37 degrees C) completely inhibited adhesion of baby hamster kidney (BHK) fibroblasts on fibronectin-coated plastic dishes. Various degrees of inhibition were also obtained after treatment with proteinase K, chymotrypsin, papain, subtilopeptidase A, and thermolysin. Protein synthesis was required to r...

  2. Appearent Digestibility of Plant Protein Based Diets by European Sea Bass Dicentrarchus labrax L., 1758

    Altan, Özgür; Ali Yıldırım Korkut

    2011-01-01

    Commercial culture of carnivorous fish demands the reduction of environmental impact of feeds; that requires minimal use of dietary animal protein. This study investigated the digestibility of diets formulated exclusively out of plant protein, added rendered ingredients and feed attractants, by the carnivore European sea bass, Dicentrarchus labrax. Juvenile European sea bass (14.0±1.0 cm) conditioned to accept artificial dry feed were stocked in polypropylene cages and fed a...

  3. Incidence of various process parameters on in vitro protein digestibility of beef meat

    Hassoun, Ahmad; Sante-Lhoutellier, Veronique; Lebert, André; Kondjoyan, Alain; Daudin, Jean-Dominique

    2011-01-01

    Protein in vitro digestion was characterized by pepsin proteolysis of myofibrillar proteins extracted from processed beef samples using 2 descriptors of the kinetics: maximum value (ODmax) and half life time (t 1/2). An experimental fractional factorial design with 32 trials was used to investigate the effect of processes variables; it consists of 5 factors each taking 2 levels (muscle type, mincing, pH, NaCl content, cooking time) and 1 factor taking 4 levels (cooking temperature). The stati...

  4. Application of protein misfolding cyclic amplification to detection of prions in anaerobic digestate.

    Gilroyed, Brandon H; Braithwaite, Shannon L; Price, Luke M; Reuter, Tim; Czub, Stefanie; Graham, Catherine; Balachandran, Arumuga; McAllister, Tim A; Belosevic, Miodrag; Neumann, Norman F

    2015-11-01

    The exceptional physio-chemical resistance of prions to established decontamination procedures poses a challenge to assessing the suitability of applied inactivation methods. Prion detection is limited by the sensitivity level of Western blotting or by the cost and time factors of bioassays. In addition, prion detection assays can be limited by either the unique or complex nature of matrices associated with environmental samples. To investigate anaerobic digestion (AD) as a practical and economical approach for potential conversion of specified risk materials (SRM) into value added products (i.e., renewable energy), challenges associated with detection of prions in a complex matrix need to be overcome to determine potential inactivation. Protein misfolding cyclic amplification (PMCA) assay, with subsequent Western blot visualization, was used to detect prions within the AD matrix. Anaerobic digestate initially inhibited the PMCA reaction and/or Western blot detection. However, at concentrations of ≤1% of anaerobic digestate, 263K scrapie prions could be amplified and semi-quantitatively detected. Infectious 263K prions were also proven to be bioavailable in the presence of high concentrations of digestate (10-90%). Development of the PMCA application to digestate provides extremely valuable insight into the potential degradation and/or fate of prions in complex biological matrices without requiring expensive and time-consuming bioassays. PMID:26272376

  5. Rapid Online Non-Enzymatic Protein Digestion Analysis with High Pressure Superheated ESI-MS.

    Chen, Lee Chuin; Kinoshita, Masato; Noda, Masato; Ninomiya, Satoshi; Hiraoka, Kenzo

    2015-07-01

    Recently, we reported a new ESI ion source that could electrospray the super-heated aqueous solution with liquid temperature much higher than the normal boiling point (J. Am. Soc. Mass Spectrom. 25, 1862-1869). The boiling of liquid was prevented by pressurizing the ion source to a pressure greater than atmospheric pressure. The maximum operating pressure in our previous prototype was 11 atm, and the highest achievable temperature was 180°C. In this paper, a more compact prototype that can operate up to 27 atm and 250°C liquid temperatures is constructed, and reproducible MS acquisition can be extended to electrospray temperatures that have never before been tested. Here, we apply this super-heated ESI source to the rapid online protein digestion MS. The sample solution is rapidly heated when flowing through a heated ESI capillary, and the digestion products are ionized by ESI in situ when the solution emerges from the tip of the heated capillary. With weak acid such as formic acid as solution, the thermally accelerated digestion (acid hydrolysis) has the selective cleavage at the aspartate (Asp, D) residue sites. The residence time of liquid within the active heating region is about 20 s. The online operation eliminates the need to transfer the sample from the digestion reactor, and the output of the digestive reaction can be monitored and manipulated by the solution flow rate and heater temperature in a near real-time basis. PMID:25832029

  6. Improvement of raw starch digestibility by ion-beam mutation of Aspergillus awamori

    Aspergillus awamori possess the ability to express raw starch digestibility. For the effective utilization of starchy crops produced in South-Asian countries, it is important to achieve the digestion of raw starchs for industrial fermentation process. In this study, higher ratio of mutant strains of Aspergillus awamori IFO4033 were isolated by irradiation of C5+ ion-beam on freeze dried spores with improvement of enzyme production for two-to threefold in the extracellular α-amylase compared with gamma-irradiation. The digestibility of raw starch from cassava, sago and sukun increased remarkably about two-to threefold by some mutant strains obtained from irradiation of C5+ ion-beam. (author)

  7. Improved ADM1 model for anaerobic digestion process considering physico-chemical reactions.

    Zhang, Yang; Piccard, Sarah; Zhou, Wen

    2015-11-01

    The "Anaerobic Digestion Model No. 1" (ADM1) was modified in the study by improving the bio-chemical framework and integrating a more detailed physico-chemical framework. Inorganic carbon and nitrogen balance terms were introduced to resolve the discrepancies in the original bio-chemical framework between the carbon and nitrogen contents in the degraders and substrates. More inorganic components and solids precipitation processes were included in the physico-chemical framework of ADM1. The modified ADM1 was validated with the experimental data and used to investigate the effects of calcium ions, magnesium ions, inorganic phosphorus and inorganic nitrogen on anaerobic digestion in batch reactor. It was found that the entire anaerobic digestion process might exist an optimal initial concentration of inorganic nitrogen for methane gas production in the presence of calcium ions, magnesium ions and inorganic phosphorus. PMID:26253912

  8. The effect of gamma irradiation on the chemical composition and digestible crude protein of poultry excreta

    The changes in the chemical composition, digestible crude protein and cell-wall constituents for two types of excreta of laying hens were studied. In type I, excreta were dried at 170-180 C for 10 minutes whereas in type II dried at 55-60 C for several days. Each type was divided into two parts, the first stored for 3 months with the control. The second part was irradiated by gamma irradiation at 100 KGy and stored for 3 months with the control. The results indicated that here was significant decrease in the crude fibre (CF), NDF and ADF between the samples and the control, for the types I and II where CF, NDF and ADF values, before and after storage, decreased by 12%, 5% and 6%, respectively, ADL values decreased by 8% (I) and 3%(II). Hemicellulose and soluble carbohydrate (NFE) values increased by 5% and 7% for types I and II respectively as a result of irradiation in comparison to the control before and after storage. Gamma irradiation had no effect on crude protein, crude fat, crude ash and digested crude protein for types I and II before and after storage. Drying type I at high temperature in comparison to type II, before and after storage, decreased the crude protein values by 16%. Digested crude protein and CF, decreased 12% and NDF by 7%. Storage of excreta after drying had no effect on the chemical changes due to irradiation for types I and II. (author). 23 refs., 6 figs., 7 tabs

  9. Estimation of the True Digestibility of Rumen Undegraded Dietary Protein in the Small Intestine of Ruminants by the Mobile Bag Technique

    Hvelplund, Torben; Weisbjerg, Martin Riis; Andersen, L. S.

    1992-01-01

    intestinal digestibility from information on the intestinal digestibility of the protein in the intact feed at any degradability estimated. The results clearly show that intestinal digestibility of undegraded dietary protein cannot be considered as a constant value as used in most protein evaluation systems...

  10. Superiority of alkali-extracted rice protein in bioavailability to starch degraded rice protein comes from digestion of prolamin in growing rats.

    Kumagai, Takehisa; Watanabe, Reiko; Saito, Mariko; Watanabe, Toshiyuki; Kubota, Masatoshi; Kadowaki, Motoni

    2009-04-01

    The rice protein prepared from alkaline extraction (AE-RP) has high digestibility compared to that obtained from starch degradation (SD-RP) in in vitro digestion experiments, and alterations in the protein body (PB) structures were observed in AE-RP in the previous study. The improvement in the digestibility of AE-RP is probably a result of the structural change of PB. The present study was carried out to elucidate the superiority of AE-RP compared to SD-RP in bioavailability in growing rats. There were no major differences between AE-RP and SD-RP in polypeptide compositions according to SDS-PAGE and their amino acid compositions. The equivalent body weight gain and similar growth curves in both AE-RP and casein (control) groups were obtained during the feeding period of 28 d, and their values were significantly higher compared to the SD-RP group (plysine concentrations at the last stage of the feeding period in the AE-RP and SD-RP groups were approximate levels and were appreciably lower, compared to that of the casein group (pimproved by alkaline extraction. PMID:19436144

  11. Seed protein improvement by nuclear techniques

    The proceedings contain papers presented at two different meetings: 1) on seed protein improvement and 2) on aneuploids in wheat protein improvement. The former meeting discusses the seed protein content in cereals and grain legumes and the relation between protein content and yield; the procedures for analysis of protein and lysine content is also discussed. The latter meeting reports the results of co-operative experiments concerned with the chromosomal location of genes affecting protein and lysine content in wheat

  12. Sonoreactor-based technology for fast high-throughput proteolytic digestion of proteins.

    Rial-Otero, R; Carreira, R J; Cordeiro, F M; Moro, A J; Fernandes, L; Moura, I; Capelo, J L

    2007-02-01

    Fast (120 s) and high-throughput (more than six samples at once) in-gel trypsin digestion of proteins using sonoreactor technology has been achieved. Successful protein identification was done by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, MALDI-TOF-MS. Specific identification of the adenylylsulphate reductase alfa subunit from a complex protein mixture from Desulfovibrio desulfuricans ATCC 27774 was done as a proof of the methodology. The new sample treatment is of easy implementation, saves time and money, and can be adapted to online procedures and robotic platforms. PMID:17269750

  13. Fecal collection methods for the determination of protein digestibility in bullfrogs

    Marta Verardino De Stéfani

    2015-08-01

    Full Text Available Adequate methods for the determination of protein digestibility in bullfrogs are important for the understanding of nutrient utilization. Therefore, this study evaluated two methods of feces collection: intestinal dissection and fecal decantation, using cylindric-conical tanks. Frogs were fed with a commercial diet (45% crude protein which was ground and supplemented with 0.5% chromium oxide III. The frogs were fasted 48h before force-feeding (5% of the animal's live weight. For the decantation method, the animals were sacrificed 36 h after force-feeding and feces were collected directly from the large intestine. For the sedimentation method, feces were collected when they appeared in the tubes attached to the front end of the cylindric tanks. No significant difference (P>0.05 in the apparent digestibility coefficients of crude protein for dietary was observed between the methods tested (74.0% and 76.4% for the dissection and decantation methods, respectively. In conclusion, both methods can be used for the determination of protein digestibility of bullfrog feeds

  14. HORSE SPECIES SYMPOSIUM: Can the microbiome of the horse be altered to improve digestion?

    Coverdale, J A

    2016-06-01

    Intensive management practices in the horse industry present a unique challenge to the microbiome of the large intestine. Common management practices such as high-concentrate diets, low forage quality, meal feeding, and confinement housing have an impact on intestinal function, specifically large intestinal fermentation. The microbiome of the equine large intestine is a complex and diverse ecosystem, and disruption of microbiota and their environment can lead to increased incidence of gastrointestinal disorder. Digestion in the horse can be improved through a variety of approaches such as feedstuff selection, forage quality, feeding management, and inclusion of digestive aids. These digestive aids, such as prebiotics and probiotics, have been used to improve digestibility of equine diets and stabilize the microbiome of the large intestine. Probiotics, or direct-fed microbials, have been widely used in horses for treatment and prevention of gastrointestinal disease. The introduction of these live, beneficial microorganisms orally into the intestinal tract has yielded variable results. However, it is difficult to compare data due to variations in choice of organism, dosage, and basal diet. Although there are still many unanswered questions about the mode of action of successful probiotics, evidence indicates competitive inhibition and enhanced immunity. Lactic acid bacteria such as , and and yeast have all successfully been used in the horse. Use of these products has resulted in improved fiber digestibility in horses offered both high-starch and high-fiber diets. When high-concentrate diets were fed, probiotic supplementation helped maintain cecal pH, decreased lactic acid concentrations, and enhanced populations of cellulolytic bacteria. Similarly, use of prebiotic preparations containing fructooligosaccharide (FOS) or mannanoligosaccharides have improved DM, CP, and NDF digestibility when added to high-fiber diets. Furthermore, use of FOS in horses reduced

  15. Studies on voltammetric determination of cadmium in samples containing native and digested proteins

    Drozd, Marcin; Pietrzak, Mariusz, E-mail: mariusz@ch.pw.edu.pl; Malinowska, Elżbieta

    2014-03-01

    Highlights: • Proteins exhibit diverse impact on the DPASV cadmium signals. • Proteins subjected to HNO{sub 3} introduce less interference, than the native ones. • Optimal amount of SDS depends on the kind of protein. • Presence of thiolated coating agents of QDs do not influence the analysis. - Abstract: This work focuses on determination of cadmium ions using anodic stripping voltammetry (ASV) on thin film mercury electrode in conditions corresponding to those obtained after digestion of cadmium-based quantum dots and their conjugates. It presents the impact of selected proteins, including potential receptors and surface blocking agents on the voltammetric determination of cadmium. Experiments regarding elimination of interferences related to proteins presence using sodium dodecyl sulfate (SDS) are also shown. Effect of SDS on selected analytical parameters and simplicity of analyses carried out was investigated in the framework of current studies. The significant differences of influence among tested proteins on ASV cadmium determination, as well as the variability in SDS effectiveness as the antifouling agent were observed and explained. This work is especially important for those, who design new bioassays and biosensors with a use of quantum dots as electrochemical labels, as it shows what problems may arise from presence of native and digested proteins in tested samples.

  16. Physicochemical properties and in vitro starch digestibility of potato starch/protein blends.

    Lu, Zhan-Hui; Donner, Elizabeth; Yada, Rickey Y; Liu, Qiang

    2016-12-10

    This study aimed to investigate effects of starch-protein interactions on physicochemical properties and in vitro starch digestibility of composite potato starch/protein blends (0, 5, 10, or 15% protein) during processing (cooking, cooling and reheating). The effect on recrystallization and short-range ordering in starch was studied by light microscopy, differential scanning calorimetry and Fourier transform infrared spectroscopy. The results show that protein in the blend proportionally restricted starch granule swelling during cooking and facilitated amylopectin recrystallization during cold-storage. The facilitating effect of protein diminished with increasing blend ratio. Resistant starch content in the processed blends was positively correlated to intensity ratio of 1053/1035cm(-1) in FTIR spectra arising from slow retrogradation of amylopectin (r(2)>0.88, P≤0.05), whose formation was favored by the presence of protein in the blends and further enhanced by cooling of cooked blends. As a conclusion, starch-protein interaction reduced starch digestibility of the processed blends. PMID:27577912

  17. Effects of gamma irradiation on ruminal protein degradation and intestinal digestibility of cottonseed meal

    The dry matter of cottonseed meal (CSM) was determined by freeze-drying 1 g sample in duplicate. Based on this value, sufficient water was added to increase the moisture content of 2.5 kg of CSM to 250 g/kg. Gamma irradiation was carried out in a cobalt-60 irradiator at 20 deg. C. The dose rate determined by Fricke dosimetry was 0.37 Gy/s. Three polyethylene packages of samples were irradiated in a gamma cell for total doses of 25, 50 and 75 kGy in the presence of air. Prior to sealing in plastic bags, samples were allowed to air equilibrate for 2 h, then refrigerated (4 deg. C). Duplicate nylon bags of untreated or irradiated CSM were suspended in the rumen of four non-lactating Holstein cows for up to 48 h, and in situ resulting data were fitted to non-linear degradation model to calculate degradation parameters of crude protein. Proteins of untreated and treated CSM bag residues were fractionated by gel electrophoresis. Intestinal digestibility of crude protein was measured using the mobile nylon bag technique. As shown, gamma irradiation of CSM resulted in decreasing of crude protein disappearance in the rumen. This is beneficial effect for high producing ruminants, which need high amount of escaped protein from rumen to intestine. Fitting disappearance data to non-linear degradation model showed that the wash out fraction and degradation rate of crude protein decreased linearly (P < 0.01), but the potentially degradable fraction increased quadratically (P < 0.01) with increases in irradiation doses. As a consequence, the effective degradability of crude protein decreased linearly (P < 0.01) as doses increased. Intestinal digestibility of ruminally undegraded crude protein increased linearly (P < 0.01) as irradiation doses increased. Three major protein components were observed: globulin 9S, globulin 5S and albumin 2S. Electrophoretic results indicated that globulin 9S in untreated cottonseed meal (whereas globulin 9S, globulin 5S and albumin 2S in gamma

  18. Effect of domestic processing on the cooking time, nutrients, antinutrients and in vitro protein digestibility of the African yambean (Sphenostylis stenocarpa).

    Ene-obong, H N; Obizoba, I C

    1996-01-01

    The effects of processing (soaking, dehulling, fermentation and heat treatment) on the cooking time, protein, mineral, tannin, phytate and in vitro protein digestibility (IVPD) of the African yambean (AYB) were examined. The cooking time ranged from 90-155 minutes. Soaking reduced cooking time by about 50 percent. Soaking for 12 hours was the most appropriate to reduce cooking time, tannin and phytate levels. It improved in vitro protein digestibility (IVPD). Prolonged soaking (24 hours) decreased calcium (Ca) and iron (Fe) values by 19 percent and 35 percent, respectively. Dehulling showed that Ca, Fe, magnesium (Mg) and zinc (Zn) were concentrated in the seed coat of the AYB. The seeds soaked and dehulled retained Mg and Zn. Dehulling reduced tannin but had no significant effect on phytate and the IVPD of the AYB except for seeds soaked for 12 hours before dehulling. Soaking for 24 hours before dehulling significantly increased crude protein content by 16 percent (p roasting increased the IVPD by 8-11 percent. Fermentation had no effect on the crude protein, Ca, Fe, Mg and Zn but significantly reduced phytate content of the AYB. Fermentation had no advantage over heat treatment with respect to improving the in vitro protein digestibility of the AYB. PMID:9139303

  19. Phosphopeptide Enrichment by Covalent Chromatography after Derivatization of Protein Digests Immobilized on Reversed-Phase Supports

    Nika, Heinz; Nieves, Edward; Hawke, David H.; Angeletti, Ruth Hogue

    2013-01-01

    A rugged sample-preparation method for comprehensive affinity enrichment of phosphopeptides from protein digests has been developed. The method uses a series of chemical reactions to incorporate efficiently and specifically a thiol-functionalized affinity tag into the analyte by barium hydroxide catalyzed β-elimination with Michael addition using 2-aminoethanethiol as nucleophile and subsequent thiolation of the resulting amino group with sulfosuccinimidyl-2-(biotinamido) ethyl-1,3-dithioprop...

  20. In Vitro Protein Digestibility and Physical Properties of Instant Teh Talua Dried by Spray Dryer

    Rina Yenrina; Deivy Andhika Permata; Dini Rasjmida; Rahmal Tayandi

    2016-01-01

    Abstract—This study aims to learn the effect of the addition of different concentrations of tea on protein digestibility and physical properties of the  product. This study has been completed from February to July 2014. This study begins with the process of making instant teh talua, then continue with prodct analysis. This study used a completely randomized design (CRD) with 5 treatments and 3 replications. Data were analyzed statistically by F test and if significantly different, followed by...

  1. The role of protein synthesis and digestive enzymes in acinar cell injury

    Logsdon, Craig D.; Ji, Baoan

    2013-01-01

    The exocrine pancreas is the organ with the highest level of protein synthesis in the adult—each day the pancreas produces litres of fluid filled with enzymes that are capable of breaking down nearly all organic substances. For optimal health, the pancreas must produce sufficient enzymes of the right character to match the dietary intake. Disruption of normal pancreatic function occurs primarily as a result of dysfunction of the acinar cells that produce these digestive enzymes, and can lead ...

  2. Improved biogas production from food waste by co-digestion with de-oiled grease trap waste.

    Wu, Li-Jie; Kobayashi, Takuro; Kuramochi, Hidetoshi; Li, Yu-You; Xu, Kai-Qin

    2016-02-01

    The objective of this study was to assess the feasibility of co-digesting food waste (FW) and de-oiled grease trap waste (GTW) to improve the biogas production. A lab-scale mesophilic digester (MD), a temperature-phased anaerobic digester (TPAD) and a TPAD with recycling (TPAD-R) were synchronously operated under mono-digestion (FW) and co-digestion (FW+de-oiled GTW). Co-digestion increased the biogas yield by 19% in the MD and TPAD-R, with a biogas yield of 0.60L/g VS added. Specific methanogenic activity in the TPAD-R was much higher than that in the MD. In addition to methane, hydrogen at a yield of approximately 1mol/mol hexose was produced in the TPAD-R. Alkalinity was consumed more in the co-digestion than in mono-digestion. Co-digestion resulted in more lipid accumulation in each digester. The MD favored the degradation of lipid and conversion of long-chain fatty acids more than the TPAD and TPAD-R. PMID:26679046

  3. NUTRALYS® pea protein: characterization of in vitro gastric digestion and in vivo gastrointestinal peptide responses relevant to satiety

    Joost Overduin

    2015-04-01

    Design: Under in vitro simulated gastric conditions, the digestion of NUTRALYS® pea protein was compared to that of two dairy proteins, slow-digestible casein and fast-digestible whey. In vivo, blood glucose and gastrointestinal hormonal (insulin, ghrelin, cholecystokinin [CCK], glucagon-like peptide 1 [GLP-1], and peptide YY [PYY] responses were monitored in nine male Wistar rats following isocaloric (11 kcal meals containing 35 energy% of either NUTRALYS® pea protein, whey protein, or carbohydrate (non-protein. Results: In vitro, pea protein transiently aggregated into particles, whereas casein formed a more enduring protein network and whey protein remained dissolved. Pea-protein particle size ranged from 50 to 500 µm, well below the 2 mm threshold for gastric retention in humans. In vivo, pea-protein and whey-protein meals induced comparable responses for CCK, GLP-1, and PYY, that is, the anorexigenic hormones. Pea protein induced weaker initial, but equal 3-h integrated ghrelin and insulin responses than whey protein, possibly due to the slower gastric breakdown of pea protein observed in vitro. Two hours after meals, CCK levels were more elevated in the case of protein meals compared to that of non-protein meals. Conclusions: These results indicate that 1 pea protein transiently aggregates in the stomach and has an intermediately fast intestinal bioavailability in between that of whey and casein; 2 pea-protein- and dairy-protein-containing meals were comparably efficacious in triggering gastrointestinal satiety signals.

  4. Crude protein, fibre and phytic acid in vitro digestibility of selected legume and buckwheat samples

    Vojtíšková, Petra; Kráčmar, Stanislav

    2013-01-01

    The aim of this study was to determine crude protein, fi bre and phytic acid in vitro digestibility of selected legumes and buckwheat products. All analyses except the phytic acid contents were performed in the line with the Commission Regulation (EC) No. 152/2009. A modifi ed version of Holt's Method was used for phytic acid (phytate) determination. None of all samples contained more than 11% of moisture. Soybeans are rich in crude protein; they contain nearly 40% of this compound. The conte...

  5. Effects of meat cooking, and of ingested amount, on protein digestion speed and entry of residual proteins into the colon: a study in minipigs.

    Marie-Laure Bax

    Full Text Available The speed of protein digestion impacts on postprandial protein anabolism. After exercise or in the elderly, fast proteins stimulate protein synthesis more efficiently than slow proteins. It has been shown that meat might be a source of fast proteins. However, cooking temperature, acting on the macrostructure and microstructure of the meat could affect both the speed, and efficiency, of protein digestion. This study aims to evaluate, in vivo, the effect of meat cooking on digestion parameters, in the context of a complete meal. Six minipigs fitted with an ileal cannula and an arterial catheter were used. In order to measure the true ileal digestibility, tested meat was obtained from a calf, the muscle proteins of which were intrinsically labelled with (15N-amino acids. Three cooking temperatures (60, 75 and 95°C; core temperature for 30 min, and three levels of intake (1, 1.45, and 1.90 g protein/kg body weight were tested. Following meat ingestion, ileal digesta and arterial blood were collected over a 9-h period. The speed of digestion, evaluated from the kinetics of amino acid appearance in blood within the first 3 h, was greater for the cooking temperature of 75°C, than for 60 or 95°C. The true ileal digestibility, which averaged 95%, was not affected by cooking temperature or by the level of meat intake. The amino acid composition of the digesta flowing at the ileum was not affected by cooking temperature. These results show that cooking temperature can modulate the speed of meat protein digestion, without affecting the efficiency of the small intestinal digestion, and consequently the entry of meat protein residues into the colon.

  6. Protein cleavage strategies for an improved analysis of the membrane proteome

    Poetsch Ansgar; Fischer Frank

    2006-01-01

    Abstract Background Membrane proteins still remain elusive in proteomic studies. This is in part due to the distribution of the amino acids lysine and arginine, which are less frequent in integral membrane proteins and almost absent in transmembrane helices. As these amino acids are cleavage targets for the commonly used protease trypsin, alternative cleavage conditions, which should improve membrane protein analysis, were tested by in silico digestion for the three organisms Saccharomyces ce...

  7. Modified Protein Improves Vitiligo Symptoms in Mice

    ... Research 2013 August 2013 (historical) Modified Protein Improves Vitiligo Symptoms in Mice Altering a key protein involved in the development of vitiligo may protect against—or even reverse—the pigmentation ...

  8. Improved radiopaque agent for X-ray examination of the upper regions of the digestive tract

    The authors describe an improved composition of barium suspension intended for X-ray examination of the upper regions of the digestive tract: esophagus, stomach and duodenum. Sorbitol, sodium citrate, antifoamnsilane and sodium carboxymethyl cellulose were incorporated additionally in the composition of barium sulfate suspension. It made it possible to raise barium sulfate concentration up to 190 mass volume per cent without a significant increase in the viscosity of the agent. The suspension also possesses a high enough anticoagulation stability in the acid medium of gastric juice. The agent can be used for both routine examination of the upper parts of the digestive tract and for primary (simultaneous) double contrast examination. The agent was tested under clinical conditions in 550 patients with the diseases of the esophagus, stomach and duodenum

  9. Improving methane production from digested manure biofibers by mechanical and thermal alkaline pretreatment.

    Tsapekos, P; Kougias, Panagiotis G; Frison, A; Raga, R; Angelidaki, I

    2016-09-01

    Animal manure digestion is associated with limited methane production, due to the high content in fibers, which are hardly degradable lignocellulosic compounds. In this study, different mechanical and thermal alkaline pretreatment methods were applied to partially degradable fibers, separated from the effluent stream of biogas reactors. Batch and continuous experiments were conducted to evaluate the efficiency of these pretreatments. In batch experiments, the mechanical pretreatment improved the degradability up to 45%. Even higher efficiency was shown by applying thermal alkaline pretreatments, enhancing fibers degradability by more than 4-fold. In continuous experiments, the thermal alkaline pretreatment, using 6% NaOH at 55°C was proven to be the most efficient pretreatment method as the methane production was increased by 26%. The findings demonstrated that the methane production of the biogas plants can be increased by further exploiting the fraction of the digested manure fibers which are discarded in the post-storage tank. PMID:27268439

  10. Response of growth and digestive organs development of Pelung x Kampung crossbred chicken to dietary proteins

    Sofjan Iskandar

    2004-12-01

    Full Text Available More information on the performance of local breed of chicken encourages more exploration on early digestive tract development of Pelung x Kampung cross chicken. One hundred and sixty day-old chicks (doc of Pelung x Kampung crossbred were sexed and allocated to two different dietary proteins of 15 or 19% with the same level of dietary energy (2900 kcal/kg and other nutrients according to levels suggested for light high breed chicken. Rations, in a form of mash, and water provided ad libitum during the 28 days of observation. Body weight and feed consumption were recorded weekly. Thirty-two day old chickens were sacrificed for digestive track analysis, then two chickens obtained from each trial replicate were also sacrificed at day 7, 14, 21 and 28, following at least 3 hours of starvation to clear the tract from remaining digesta. The cut organs (crop, proventriculus, gizzard, duodenum, jejunum, ileum and caecum were separated and cleaned carefully from digesta with tissue paper prior to weighing. Number of birds in each cage was rearranged to keep the number relatively the same throughout the replicates every week after sacrificing. Higher body weight of young chicken to 19% dietary protein compared to 15% dietary protein was shown at 28 days of age. Gizzard, duodenum, jejunum and ileum developments of male chicks were significantly higher than that of females when the chicks reached the age of 28 day. Generally the relatif weight of duodenum and jejunum were relatively higher than the development of growth or development of other digestive organ segmens. Response of other observed parameters other than mentioned above to dietary protein nor sex were not significantly different at any other ages.

  11. The Effects of Fortification of Legumes and Extrusion on the Protein Digestibility of Wheat Based Snack

    Swapnil S. Patil

    2016-04-01

    Full Text Available Cereal food products are an important part of the human diet with wheat being the most commonly consumed cereal in many parts of the world. Extruded snack products are increasing in consumer interest due to their texture and ease of use. However, wheat based foods are rich in starch and are associated with high glycaemic impact products. Although legume materials are generally rich in fibre and protein and may be of high nutritive value, there is a paucity of research regarding their use in extruded snack food products. The aim of this study was to prepare wheat-based extrudates using four different legume flours: lentil, chickpea, green pea, and yellow pea flour. The effects of adding legumes to wheat-based snacks at different levels (0%, 5%, 10%, and 15% during extrusion were investigated in terms of protein digestibility. It was observed that fortification of snacks with legumes caused a slight increase in the protein content by 1%–1.5% w/w, and the extrusion technique increased the protein digestibility by 37%–62% w/v. The product developed by extrusion was found to be low in fat and moisture content.

  12. Minimizing asynchronism to improve the performances of anaerobic co-digestion of food waste and corn stover.

    Zhou, Qi; Shen, Fei; Yuan, Hairong; Zou, Dexun; Liu, Yanping; Zhu, Baoning; Jaffu, Muhanmad; Chufo, Akiber; Li, Xiujin

    2014-08-01

    To investigate the existence of the asynchronism during the anaerobic co-digestion of different substrates, two typical substrates of food waste and corn stover were anaerobically digested with altering organic loadings (OL). The results indicated that the biodegradability of food waste and corn stover was calculated to be 81.5% and 55.1%, respectively, which was main reason causing the asynchronism in the co-digestion. The asynchronism was minimized by NaOH-pretreatment for corn stover, which could improve the biodegradability by 36.6%. The co-digestion with pretreatment could increase the biomethane yield by 12.2%, 3.2% and 0.6% comparing with the co-digestion without pretreatment at C/N ratios of 20, 25 and 30 at OL of 35 g-VS/L, respectively. The results indicated that the digestibility synchronism of food waste and corn stover was improved through enhancing the accessibility and digestibility of corn stover. The biomethane production could be increased by minimizing the asynchronism of two substrates in co-digestion. PMID:24880810

  13. Denaturation and in Vitro Gastric Digestion of Heat-Treated Quinoa Protein Isolates Obtained at Various Extraction pH

    Ruiz, Geraldine Avila; Opazo-Navarrete, Mauricio; Meurs, Marlon; Minor, Marcel; Sala, Guido; van Boekel, Martinus; Stieger, Markus; Janssen, Anja E.M.

    2016-01-01

    The aim of this study was to determine the influence of heat processing on denaturation and digestibility properties of protein isolates obtained from sweet quinoa (Chenopodium quinoa Willd) at various extraction pH values (8, 9, 10 and 11). Pretreatment of suspensions of protein isolates at 60, 90 and 120 °C for 30 min led to protein denaturation and aggregation, which was enhanced at higher treatment temperatures. The in vitro gastric digestibility measured during 6 h was lower for protein ...

  14. Protein improvement in crop plants

    There are compelling reasons for attempting to increase the quality and quantity of protein available in crop plants through plant breeding, despite the fact that some critics have argued that no worldwide protein shortage exists. What used to be thought of as a 'protein gap' has now come to be considered in terms of protein-calorie malnutrition. This is only right since protein and calorie nutrition are inextricable. t the moment there are still unanswered questions as to the precise protein requirements of humans as a function of age, health and ambient conditions. There are, in addition, some indications that the incidence of Kwashiorkor (protein deficiency disease) is increasing in different parts of the world. At a recent meeting of the Protein Advisory Group of the United Nations System, Dr. Jean Mayer, an eminent human nutritionist of Harvard University, U.S.A., indicated the reasons for concern for the current food situation generally, and the protein food supply in particular. These factors include: - Immoderate continuing human population increases, most pronounced in some poor developing countries. - The highly accelerated consumption of animal foods associated with increasing affluence in the richer countries of the world. The production of such foods as meat demands great expenditures of grain, which is an inefficient mode of obtaining the required calories and protein for human consumption. - The over-exploitation of many of the world's fishery resources resulting in reduced yields, perhaps irreversibly, of some fishes. - Recent price increases in petroleum and fertilizer products which have imposed a major obstacle to increasing crop production. - The apparent alteration of climates in places like Africa, Asia and other parts of the Northern hemisphere which may put significant restrictions on crop production. hey are cogent reasons to be seriously concerned about these matters. (author)

  15. The Effects of Different Energy and Protein Ratio to Sheep’s Nutrient Intake and Digestibility

    Sri Mawati

    2013-06-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} The objective of this research was to study the effects of different energy and protein ratio towards sheep’s nutrient intake and digestibility. Twenty four male sheep’s, 6 – 7 months old with initial average live weight 13+1.56 kg, coefficient variant11.78% were used in this research. The complete feed ration which consisted of King Grass (Pennisetum purpureum, soybean powder, rice bran, dried cassava and molasses was used in this research. Protein content on each component was 10, 12 and 14% and total digestible nutrients (TDN 60 and 65%, respectively. Dry matter (DM and organic matter (OM intake, DM and OM digestibility were studied in this research. Analysis of variance (ANOVA was employed to analyze the data. Test of Small Difference (P<0.05 was then carried out if significant different occurred. The research results showed that Dry matter and OM ration intake showed significant different among treatments (P<0.05. The highest DM intake was obtained at crude protein (CP 14% and TDN 65% i.e. 695.54 g while the lowest value was CP 14% and TDN 65% i.e. 462.11 g. Thus different DM and OM intake were caused by different ration ingredients composition. Dry matter and OM ration digestibility were not show

  16. Impact of Lipid and Protein Co-oxidation on Digestibility of Dairy Proteins in Oil-in-Water (O/W) Emulsions.

    Obando, Mónica; Papastergiadis, Antonios; Li, Shanshan; De Meulenaer, Bruno

    2015-11-11

    Enrichment of polyunsaturated fatty acids (PUFAs) is a growing trend in the food industry. However, PUFAs are known to be susceptible to lipid oxidation. It has been shown that oxidizing lipids react with proteins present in the food and that as a result polymeric protein complexes are produced. Therefore, the aim of this work was to investigate the impact of lipid and protein co-oxidation on protein digestibility. Casein and whey protein (6 mg/mL) based emulsions with 1% oil with different levels of PUFAs were subjected to respectively autoxidation and photo-oxidation. Upon autoxidation at 70 °C, protein digestibility of whey protein based emulsions containing fish oil decreased to 47.7 ± 0.8% after 48 h, whereas in the controls without oil 67.8 ± 0.7% was observed. Upon photo-oxidation at 4 °C during 30 days, mainly casein-based emulsions containing fish oil were affected: the digestibility amounted to 43.9 ± 1.2%, whereas in the control casein solutions without oil, 72.6 ± 0.2% of the proteins were digestible. Emulsions containing oils with high PUFA levels were more prone to lipid oxidation and thus upon progressive oxidation showed a higher impact on protein digestibility. PMID:26466987

  17. Cysteine and Aspartyl Proteases Contribute to Protein Digestion in the Gut of Freshwater Planaria

    Goupil, Louise S.; Ivry, Sam L.; Hsieh, Ivy; Suzuki, Brian M.; Craik, Charles S.; O’Donoghue, Anthony J.; McKerrow, James H.

    2016-01-01

    Proteases perform numerous vital functions in flatworms, many of which are likely to be conserved throughout the phylum Platyhelminthes. Within this phylum are several parasitic worms that are often poorly characterized due to their complex life-cycles and lack of responsiveness to genetic manipulation. The flatworm Schmidtea mediterranea, or planaria, is an ideal model organism to study the complex role of protein digestion due to its simple life cycle and amenability to techniques like RNA interference (RNAi). In this study, we were interested in deconvoluting the digestive protease system that exists in the planarian gut. To do this, we developed an alcohol-induced regurgitation technique to enrich for the gut enzymes in S. mediterranea. Using a panel of fluorescent substrates, we show that this treatment produces a sharp increase in proteolytic activity. These enzymes have broad yet diverse substrate specificity profiles. Proteomic analysis of the gut contents revealed the presence of cysteine and metallo-proteases. However, treatment with class-specific inhibitors showed that aspartyl and cysteine proteases are responsible for the majority of protein digestion. Specific RNAi knockdown of the cathepsin B-like cysteine protease (SmedCB) reduced protein degradation in vivo. Immunohistochemistry and whole-mount in situ hybridization (WISH) confirmed that the full-length and active forms of SmedCB are found in secretory cells surrounding the planaria intestinal lumen. Finally, we show that the knockdown of SmedCB reduces the speed of tissue regeneration. Defining the roles of proteases in planaria can provide insight to functions of conserved proteases in parasitic flatworms, potentially uncovering drug targets in parasites. PMID:27501047

  18. Cysteine and Aspartyl Proteases Contribute to Protein Digestion in the Gut of Freshwater Planaria.

    Goupil, Louise S; Ivry, Sam L; Hsieh, Ivy; Suzuki, Brian M; Craik, Charles S; O'Donoghue, Anthony J; McKerrow, James H

    2016-08-01

    Proteases perform numerous vital functions in flatworms, many of which are likely to be conserved throughout the phylum Platyhelminthes. Within this phylum are several parasitic worms that are often poorly characterized due to their complex life-cycles and lack of responsiveness to genetic manipulation. The flatworm Schmidtea mediterranea, or planaria, is an ideal model organism to study the complex role of protein digestion due to its simple life cycle and amenability to techniques like RNA interference (RNAi). In this study, we were interested in deconvoluting the digestive protease system that exists in the planarian gut. To do this, we developed an alcohol-induced regurgitation technique to enrich for the gut enzymes in S. mediterranea. Using a panel of fluorescent substrates, we show that this treatment produces a sharp increase in proteolytic activity. These enzymes have broad yet diverse substrate specificity profiles. Proteomic analysis of the gut contents revealed the presence of cysteine and metallo-proteases. However, treatment with class-specific inhibitors showed that aspartyl and cysteine proteases are responsible for the majority of protein digestion. Specific RNAi knockdown of the cathepsin B-like cysteine protease (SmedCB) reduced protein degradation in vivo. Immunohistochemistry and whole-mount in situ hybridization (WISH) confirmed that the full-length and active forms of SmedCB are found in secretory cells surrounding the planaria intestinal lumen. Finally, we show that the knockdown of SmedCB reduces the speed of tissue regeneration. Defining the roles of proteases in planaria can provide insight to functions of conserved proteases in parasitic flatworms, potentially uncovering drug targets in parasites. PMID:27501047

  19. In Vitro Protein Digestibility and Physical Properties of Instant Teh Talua Dried by Spray Dryer

    Rina Yenrina

    2016-02-01

    Full Text Available Abstract—This study aims to learn the effect of the addition of different concentrations of tea on protein digestibility and physical properties of the  product. This study has been completed from February to July 2014. This study begins with the process of making instant teh talua, then continue with prodct analysis. This study used a completely randomized design (CRD with 5 treatments and 3 replications. Data were analyzed statistically by F test and if significantly different, followed by Duncan's test New Multiple Range Test (DNMRT at 5% level. The treatment in this study include A (Without Tea Extract, B (5 g of Tea Extract in 100 ml of water, C (10 g of Tea Extract in 100 ml of water, D (15 g of Tea Extract in 100 ml of water, and E (20 g of Tea Extract in 100 ml of water. The results of this study showed that the addition of treatment between different tea extract gives significant effect on protein content, water-soluble portion, protein digestibility, and no significant effect on moisture content and water activities.

  20. Pepsin immobilized in dextran-modified fused-silica capillaries for on-line protein digestion and peptide mapping

    Stigter, E.C.A. [Division of Biomedical Analysis, Department of Pharmaceutical Sciences, Faculty of Science, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht (Netherlands)], E-mail: e.c.a.stigter@uu.nl; Jong, G.J. de; Bennekom, W.P. van [Division of Biomedical Analysis, Department of Pharmaceutical Sciences, Faculty of Science, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht (Netherlands)

    2008-07-07

    On-line digestion of proteins under acidic conditions was studied using micro-reactors consisting of dextran-modified fused-silica capillaries with covalently immobilized pepsin. The proteins used in this study differed in molecular weight, isoelectric point and sample composition. The injected protein samples were completely digested in 3 min and the digest was analyzed with micro-high performance liquid chromatography (HPLC) and tandem mass spectrometry (MS/MS). The different proteins present in the samples could be identified with a Mascot database search on the basis of auto-MS/MS data. It proved also to be possible to digest and analyze protein mixtures with a sequence coverage of 55% and 97% for the haemoglobin {beta}- and {alpha}-chain, respectively, and 35-55% for the various casein variants. Protease auto-digestion, sample carry-over and loss of signal due to adsorption of the injected proteins were not observed. The backpressure of the reactor is low which makes coupling to systems such as Surface Plasmon Resonance biosensors, which do not tolerate too high pressure, possible. The reactor was stable for at least 40 days when used continuously.

  1. Pepsin immobilized in dextran-modified fused-silica capillaries for on-line protein digestion and peptide mapping

    On-line digestion of proteins under acidic conditions was studied using micro-reactors consisting of dextran-modified fused-silica capillaries with covalently immobilized pepsin. The proteins used in this study differed in molecular weight, isoelectric point and sample composition. The injected protein samples were completely digested in 3 min and the digest was analyzed with micro-high performance liquid chromatography (HPLC) and tandem mass spectrometry (MS/MS). The different proteins present in the samples could be identified with a Mascot database search on the basis of auto-MS/MS data. It proved also to be possible to digest and analyze protein mixtures with a sequence coverage of 55% and 97% for the haemoglobin β- and α-chain, respectively, and 35-55% for the various casein variants. Protease auto-digestion, sample carry-over and loss of signal due to adsorption of the injected proteins were not observed. The backpressure of the reactor is low which makes coupling to systems such as Surface Plasmon Resonance biosensors, which do not tolerate too high pressure, possible. The reactor was stable for at least 40 days when used continuously

  2. Apparent digestibility coefficients of three protein ingredients in capaz, Pimelodus grosskopfii

    Rubén D. Valbuena- Villareal; Beatriz E. Zapata- Berruecos; Mariana C. Gutiérrez-Espinosa

    2012-01-01

    The purpose of this study vas to determine the digestibility of dry matter (DM), crude protein (CP), and gross energy (GE) of three ingredients in capaz (Pimelodus grosskopfii). Ninety specimens of capaz were used. They weighted and sized about 114 ± 15 g and 23 ± 0.5 cm respectively. In order to collect the feces a battery of three fiberglass tanks with a capacity of 200 L, and conical bottom (modified Guelph system) was used. The ADC of ingredients were calculated by indirect method using ...

  3. Induced mutants for cereal grain protein improvement

    Out of 17 papers and one summary presented, six dealing with the genetic improvement of seed protein using ionizing radiations fall within the INIS subject scope. Other topics discussed were non-radiation induced mutants used for cereal grain protein improvement

  4. Can electromagnetic fields influence the structure and enzymatic digest of proteins? A critical evaluation of microwave-assisted proteomics protocols

    Damm, Markus; Nusshold, Christoph; Cantillo, David; Rechberger, Gerald N.; Gruber, Karl; Sattler, Wolfgang; Kappe, C Oliver

    2012-01-01

    This study reevaluates the putative advantages of microwave-assisted tryptic digests compared to conventionally heated protocols performed at the same temperature. An initial investigation of enzyme stability in a temperature range of 37–80 °C demonstrated that trypsin activity declines sharply at temperatures above 60 °C, regardless if microwave dielectric heating or conventional heating is employed. Tryptic digests of three proteins of different size (bovine serum albumin, cytochrome c and ...

  5. Struvite Precipitation as a Means of Recovering Nutrients and Mitigating Ammonia Toxicity in a Two-Stage Anaerobic Digester Treating Protein-Rich Feedstocks

    Shunli Wang

    2016-08-01

    Full Text Available Accumulation of ammonia, measured as total ammonia nitrogen (TAN, a product of protein decomposition in slaughterhouse wastes, inhibits the anaerobic digestion process, reducing digester productivity and leading to failure. Struvite precipitation (SP is an effective means to remove TAN and enhance the buffering of substrates. Different Mg and P sources were evaluated as reactants in SP in acidogenic digester effluents to reduce its TAN levels. In order to measure impact of TAN removal, a standard biochemical methane potential (BMP test was conducted to measure methane yield from treatments that had the highest TAN reductions. SP results showed 6 of 9 reagent combinations resulted in greater than 70% TAN removal. The BMP results indicated that SP treatment by adding Mg(OH2 and H3PO4 resulted in 57.6% nitrogen recovery and 41.7% increase in methane yield relative to the substrate without SP. SP is an effective technology to improve nutrient recovery and methane production from the anaerobic digestion of protein-rich feedstocks.

  6. Denaturation and in Vitro Gastric Digestion of Heat-Treated Quinoa Protein Isolates Obtained at Various Extraction pH

    Ruiz, Geraldine Avila; Opazo-Navarrete, Mauricio; Meurs, Marlon; Minor, Marcel; Sala, Guido; Boekel, van Martinus; Stieger, Markus; Janssen, Anja E.M.

    2016-01-01

    The aim of this study was to determine the influence of heat processing on denaturation and digestibility properties of protein isolates obtained from sweet quinoa (Chenopodium quinoa Willd) at various extraction pH values (8, 9, 10 and 11). Pretreatment of suspensions of protein isolates at 60,

  7. imFASP: An integrated approach combining in-situ filter-aided sample pretreatment with microwave-assisted protein digestion for fast and efficient proteome sample preparation.

    Zhao, Qun; Fang, Fei; Wu, Ci; Wu, Qi; Liang, Yu; Liang, Zhen; Zhang, Lihua; Zhang, Yukui

    2016-03-17

    An integrated sample preparation method, termed "imFASP", which combined in-situ filter-aided sample pretreatment and microwave-assisted trypsin digestion, was developed for preparation of microgram and even nanogram amounts of complex protein samples with high efficiency in 1 h. For imFASP method, proteins dissolved in 8 M urea were loaded onto a filter device with molecular weight cut off (MWCO) as 10 kDa, followed by in-situ protein preconcentration, denaturation, reduction, alkylation, and microwave-assisted tryptic digestion. Compared with traditional in-solution sample preparation method, imFASP method generated more protein and peptide identifications (IDs) from preparation of 45 μg Escherichia coli protein sample due to the higher efficiency, and the sample preparation throughput was significantly improved by 14 times (1 h vs. 15 h). More importantly, when the starting amounts of E. coli cell lysate decreased to nanogram level (50-500 ng), the protein and peptide identified by imFASP method were improved at least 30% and 44%, compared with traditional in-solution preparation method, suggesting dramatically higher peptide recovery of imFASP method for trace amounts of complex proteome samples. All these results demonstrate that the imFASP method developed here is of high potential for high efficient and high throughput preparation of trace amounts of complex proteome samples. PMID:26920773

  8. The impact of dietary protein levels on nutrient digestibility and water and nitrogen balances in eventing horses.

    Oliveira, C A A; Azevedo, J F; Martins, J A; Barreto, M P; Silva, V P; Julliand, V; Almeida, F Q

    2015-01-01

    This study was performed to evaluate the impact of dietary protein levels on nutrient digestibility and water and nitrogen balances in conditioning eventing horses. Twenty-four Brazilian Sport Horses, male and female (8.0 to 15.0 yr; 488 ± 32 kg BW), were used in a randomized design with 4 levels of CP diets: 7.5%, 9.0%, 11.0%, and 13.0%. A digestion assay was performed with partial feces collection over 4 d, followed by 1 d of total urine collection. Data were submitted to regression analysis and adjusted to linear and quadratic models (P water intake, total water intake, or fecal water excretion. Urinary excretion values showed a linear increase in response to increased dietary protein levels, but no impact was observed on water balance, with an average of 8.4 L/d. Nitrogen intake (NI), N absorption (NA), and urinary N increased linearly as a function of increasing dietary protein levels. There was no impact of dietary protein levels on N retention (NR), with an average of 7.5 g N/d. Nitrogen retention as a percentage of NI or NA showed no significant changes in the function of dietary protein levels. There was an impact of dietary protein levels on the digestibility coefficient of CP, NDF, ADF, and digestible protein intake on conditioning eventing horses. The 11.6% CP level in the diet provided an intake of 2.25 g CP/kg BW and 0.37 g N/kg BW, and this intake was the most appropriate for the conditioning of intensely exercised horses, considering the responses related to NI, NA, and the estimated NR to NA ratio. The NDF and ADF responses indicated that dietary fiber was more digested with an increased amount of N in the digestive tract. PMID:25568371

  9. Influence of Hydrocolloids (Dietary Fibers) on Lipid Digestion of Protein-Stabilized Emulsions: Comparison of Neutral, Anionic, and Cationic Polysaccharides.

    Qin, Dingkui; Yang, Xiaojun; Gao, Songran; Yao, Junhu; McClements, David Julian

    2016-07-01

    The impact of dietary fibers on lipid digestion within the gastrointestinal tract depends on their molecular and physicochemical properties. In this study, the influence of the electrical characteristics of dietary fibers on their ability to interfere with the digestion of protein-coated lipid droplets was investigated using an in vitro small intestine model. Three dietary fibers were examined: cationic chitosan; anionic alginate; neutral locust bean gum (LBG). The particle size, ζ-potential, microstructure, and apparent viscosity of β-lactoglobulin stabilized oil-in-water emulsions containing different types and levels of dietary fiber were measured before and after lipid digestion. The rate and extent of lipid digestion depended on polysaccharide type and concentration. At relatively low dietary fiber levels (0.1 to 0.2 wt%), the initial lipid digestion rate was only reduced by chitosan, but the final extent of lipid digestion was unaffected by all 3 dietary fibers. At relatively high dietary fiber levels (0.4 wt%), alginate and chitosan significantly inhibited lipid hydrolysis, whereas LBG did not. The impact of chitosan on lipid digestion was attributed to its ability to promote fat droplet aggregation through bridging flocculation, thereby retarding access of the lipase to the droplet surfaces. The influence of alginate was mainly ascribed to its ability to sequester calcium ions and promote depletion flocculation. PMID:27300319

  10. Rumen Degradability and Small Intestinal Digestibility of the Amino Acids in Four Protein Supplements.

    Wang, Y; Jin, L; Wen, Q N; Kopparapu, N K; Liu, J; Liu, X L; Zhang, Y G

    2016-02-01

    The supplementation of livestock feed with animal protein is a present cause for public concern, and plant protein shortages have become increasingly prominent in China. This conflict may be resolved by fully utilizing currently available sources of plant protein. We estimated the rumen degradability and the small intestinal digestibility of the amino acids (AA) in rapeseed meal (RSM), soybean meal (SBM), sunflower seed meal (SFM) and sesame meal (SSM) using the mobile nylon bag method to determine the absorbable AA content of these protein supplements as a guide towards dietary formulations for the dairy industry. Overall, this study aimed to utilize protein supplements effectively to guide dietary formulations to increase milk yield and save plant protein resources. To this end, we studied four cows with a permanent rumen fistula and duodenal T-shape fistula in a 4×4 Latin square experimental design. The results showed that the total small intestine absorbable amino acids and small intestine absorbable essential amino acids were higher in the SBM (26.34% and 13.11% dry matter [DM], respectively) than in the SFM (13.97% and 6.89% DM, respectively). The small intestine absorbable Lys contents of the SFM, SSM, RSM and SBM were 0.86%, 0.88%, 1.43%, and 2.12% (DM basis), respectively, and the absorbable Met contents of these meals were 0.28%, 1.03%, 0.52%, and 0.47% (DM basis), respectively. Among the examined food sources, the milk protein score of the SBM (0.181) was highest followed by those of the RSM (0.136), SSM (0.108) and SFM (0.106). The absorbable amino acid contents of the protein supplements accurately reflected protein availability, which is an important indicator of the balance of feed formulation. Therefore, a database detailing the absorbable AA should be established. PMID:26732449

  11. Amaranth-protein interaction in food system and its impact on tryptic digestibility

    Amaranth, a food color, is used in variety of food products to attract consumers, especially children. The purpose of the present study was to identify the component present in the food system which acts as a carrier of color and its distribution. The protein is the most possible candidate for color-conjugates and this was first explored by staining the resolved food proteins on PAGE simultaneously and separately with Amaranth as well as by Coomassie brilliant blue R250. It is the most widely used dye for protein assay. The color intensity of the Amaranth-protein complexes was slightly less than those of Coomassie brilliant blue R250, although the bands stained by Amaranth were very sharp, clearly separated and distinct. The staining procedure followed for Amaranth was quick. The impact of tryptic digestibility on amaranth-protein complexes has illustrated that dye may safely be used without any adverse effect. The possible moode of conjugation between amino acid and azo-bond is also discussed. (author)

  12. Amino acid profiles and digestible indispensable amino acid scores of proteins from the prioritized key foods in Bangladesh.

    Shaheen, Nazma; Islam, Saiful; Munmun, Sarah; Mohiduzzaman, Md; Longvah, Thingnganing

    2016-12-15

    Concentrations of standard amino acids were determined in the composite samples (representing 30 agro-ecological zones of Bangladesh) of six prioritized key dietary protein sources: Oryza sativa (rice), Triticum aestivum (wheat flour), Lens culinaris (lentils), Pangusius pangusius (pangas), Labeo rohita (rohu) and Oreochromis mossambicus (tilapia). Digestible indispensable amino acid scores (DIAAS) was calculated using published data on amino acids' digestibility to evaluate the protein quality of these foods. Indispensable amino acid (IAA) contents (mg IAA/g protein), found to be highest in pangas (430) and lowest in wheat (336), of all these analyzed foods exceeded the FAO recommended daily allowance (277mg IAA/g protein) and contributed on average 40% to total amino acid contents. Untruncated DIAAS values ranged from 51% (lysine) in wheat to 106% (histidine) in pangas and distinguished pangas, rohu, and tilapia containing 'excellent quality' protein (DIAAS>100%) with potential to complement lower quality protein of cereals, fruits, and vegetables. PMID:27451158

  13. Combining protein extraction and anaerobic digestion to produce feed, fuel and fertilizer from green biomass – An organic biorefinery concept

    Fernandez, Maria Santamaria; Salces, Beatriz Molinuevo; Lübeck, Mette;

    Organically grown green biomass (red clover, clover grass) was investigated as a resource for organic feed and organic fertilizer by combination of proteins extraction and anaerobic digestion of the residues. Extraction of proteins from both crops revealed very favourable amino acid composition f...... inhibition was detected but the adaptation of microorganisms in the case of the press cake and the substrate overload in the case of the brown juice played a major role for efficient conversion of both fractions during the anaerobic digestion process....

  14. Effects of synchronizing starch and protein degradation in rumen on fermentation, nutrient utilization and total tract digestibility in sheep

    Birgul Bozan; Gulay Deniz; Bulent Haluk Gulmez; Hakan Biricik; Ibrahim Ismet Turkmen; Hidir Gencoglu

    2010-01-01

    The objective of this experiment was to investigate the effects of synchronizing the dietary starch and crude protein (CP) degradation in the rumen on nutrient utilization, fermentation, and total tract digestibility in sheep. The four diets were formulated with different rates of starch and CP release in the rumen but with similar metabolic energy, starch, and CP. The diets were slowly degradable starch, slowly degradable protein; slowly degradable starch, rapidly degradable protein; rapidly...

  15. Characterization of digestates: do they fit with soil improvers or fertilisers standards?

    Trémier, A.; Buffet, J.; Daumoin, M.; Saint Cast, P.; Picard, S.; Berger, S.

    2013-01-01

    Management of digestates could be a key issue for the future development of the anaerobic digestion market. Actually, a clear definition of their status and quality is necessary to secure valorization opportunities for all of the treated organic matter. In this study, three digestion plants have been followed for one year. Raw, solid and liquid digestate were sampled and characterized five times along the year in order to state on their quality and to compare it to the existing standards for ...

  16. Improving the stability of thermophilic anaerobic digesters treating SS-OFMSW through enrichment with compost and leachate seeds

    Ghanimeh, Sophia A.

    2013-03-01

    This paper examines the potential of improving the stability of thermophilic anaerobic digestion of source-sorted organic fraction of municipal solid waste (SS-OFMSW) by adding leachate and compost during inoculation. For this purpose, two stable thermophilic digesters, A (control) and B (with added leachate and compost), were subjected to a sustained substrate shock by doubling the organic loading rate for one week. Feeding was suspended then gradually resumed to reach the pre-shock loading rate (2. gVS/l/d). Digester A failed, exhibiting excessive increase in acetate and a corresponding decrease in pH and methane generation, and lower COD and solids removal efficiencies. In contrast, digester B was able to restore its functionality with 90% recovery of pre-shock methane generation rate at stable pH, lower hydrogen levels, and reduced VFAs and ammonia accumulation. © 2012 Elsevier Ltd.

  17. Improving the mixing performances of rice straw anaerobic digestion for higher biogas production by computational fluid dynamics (CFD) simulation.

    Shen, Fei; Tian, Libin; Yuan, Hairong; Pang, Yunzhi; Chen, Shulin; Zou, Dexun; Zhu, Baoning; Liu, Yanping; Li, Xiujin

    2013-10-01

    As a lignocellulose-based substrate for anaerobic digestion, rice straw is characterized by low density, high water absorbability, and poor fluidity. Its mixing performances in digestion are completely different from traditional substrates such as animal manures. Computational fluid dynamics (CFD) simulation was employed to investigate mixing performances and determine suitable stirring parameters for efficient biogas production from rice straw. The results from CFD simulation were applied in the anaerobic digestion tests to further investigate their reliability. The results indicated that the mixing performances could be improved by triple impellers with pitched blade, and complete mixing was easily achieved at the stirring rate of 80 rpm, as compared to 20-60 rpm. However, mixing could not be significantly improved when the stirring rate was further increased from 80 to 160 rpm. The simulation results agreed well with the experimental results. The determined mixing parameters could achieve the highest biogas yield of 370 mL (g TS)(-1) (729 mL (g TS(digested))(-1)) and 431 mL (g TS)(-1) (632 mL (g TS(digested))(-1)) with the shortest technical digestion time (T 80) of 46 days. The results obtained in this work could provide useful guides for the design and operation of biogas plants using rice straw as substrates. PMID:23873639

  18. Effect of Dietary Protein Level and Origin on the Redox Status in the Digestive Tract of Mice

    Guowei Le

    2008-04-01

    Full Text Available The present study was undertaken to evaluate the effects of high protein (soybean protein or casein on the balance between production of free radicals and antioxidant level in digestive organs of mice. For this purpose, male (C57BL/6J mice were adapted to experimental diets containing soybean protein or casein with 20% (normal protein diets, NPDs or 60% (high protein diets, HPDs, and HPDs supplemented with 0.06g/kg cysteamine. After two weeks of feeding, oxidative and antioxidative parameters in duodenum, liver and pancreas were measured. The results show that ingestion of high protein markedly increased contents of superoxide anion and malondialdehyde (MDA, decreased activities of superoxide dismutase (SOD, glutathione peroxidase (GSH-Px, catalase (CAT and Na+ K+-ATPase, and content of reduced glutathione (GSH in digestive organs of mice (P<0.05. Levels of oxidative parameters were lower and antioxidant capacity of both enzyme and non-enzyme was higher in mice fed with soybean protein than those fed with casein. In groups fed HPDs supplemented with cysteamine, oxidative stress was mitigated. However, oxidative parameter levels were still higher than those of NPD-fed groups. The present study indicates that ingestion of high protein diets could result in an imbalance between oxidant and antioxidant, and thus induce oxidative stress in digestive organs of mice. The oxidative damage was smaller in mice fed with high level of soy protein in comparison with casein.

  19. Intestinal absorption of end products from digestion of carbohydrates and proteins in the pig.

    Rerat, A A

    1985-07-01

    The kinetics of appearance of various nutrients in the portal vein during the postprandial period was studied in conscious pigs by means of a technique based on measurement of the porto-arterial differences in nutrient concentrations simultaneously with that of the portal blood flow rate. The rate and level of appearance of sugars in the portal vein varied with the carbohydrate ingested. It was very rapid after intake of glucose and sucrose, slower after that of maize starch and very slow after that of lactose. The absorption of the latter became very rapid again if it was hydrolysed prior to its ingestion. During absorption, some sugars (fructose or galactose) released from the corresponding sucrose and lactose, respectively during digestion, were partly metabolized into glucose by the enterocyte. The rate of absorption of amino acids released in the digestive tract varied according to the origin of the food ingested, i.e. it was more rapid after intake of wheat or fish proteins than after that of barley. In the case of barley the absorption rate of amino acids differed from that of glucose of the starch. The profile of the amino acid mixtures appearing in the portal vein during absorption differed a little from the profiles of those present in the ingested proteins in the case of essential amino acids and differed much in the case of non essential amino acids. Some essential amino acids (histidine, aromatic amino acids) appeared more rapidly and others more slowly, (lysine, sulphur amino acids, arginine). Because of transaminations, only small amounts of glutamic acid occurred in the portal vein whereas the amounts of alanine as compared to those ingested, were very large. The hierarchy of amino acid absorption was the same whatever the protein studied (fish, wheat, barley). The appearance in the portal vein of alpha-amino nitrogen from enzyme hydrolysates perfused through the duodenum was more rapid than after perfusion of a mixture of free amino acids. During

  20. Effect of simulated processing on the antioxidant capacity and in vitro protein digestion of fruit juice-milk beverage model systems.

    He, Zhiyong; Yuan, Bo; Zeng, Maomao; Tao, Guanjun; Chen, Jie

    2015-05-15

    The effects of simulated processing (pH adjustment and thermal treatment) on the antioxidant capacity and in vitro protein digestion of fruit juice-milk beverage (FJMB) models consisting of whey protein (WP), and chlorogenic acid (CHA) or catechin (CAT) were investigated. Results indicated that CAT was more susceptible to processing than CHA, and showed a significant (p 0.05) by pasteurization, whereas sterilization initially accelerated WP digestion but did not change its overall digestibility. PMID:25577106

  1. Effects of diets containing vegetable protein concentrates on performance and activity of digestive enzymes in silver catfish (Rhamdia quelen

    Naglezi de Menezes Lovatto

    2014-02-01

    Full Text Available The purpose of study was to evaluate the effect of using protein concentrates crambe and sunflower meal in the diet of silver catfish juveniles, as substitute for animal protein source. A total of 300 silver catfish had been separate in 15 experimental units of 280 L, totaling five treatments with three replications. We evaluated two levels (25% and 50% replacement of the meat and bone meal by protein concentrates of crambe and sunflower meals. Evaluated growth parameters, biological index and digestive enzymes in fish. There was no statistical difference for mass (g and standard length (cm, but the fish diet CPFCr-25% had greater total length (cm. No difference in dry matter, crude protein and total protein deposited (calculated. However, there was a higher concentration of ash in the carcass of the animals fed the control diet and CPFCr-50% in relation to diet CPFG- 50%, in addition, higher levels of lipids in fish fed diet CPFG-50%. No significant differences for hepatosomatic index, digestive somatic index and intestinal quotient of animals subjected to different treatments. The activity of digestive enzymes trypsin and chymotrypsin did not change. There was increased activity of acid protease. The quantitative and qualitative increase in protein concentration from this fraction allows the use of bran protein concentrates crambe and sunflower as substitutes for animal protein source.

  2. Comparison of cake compositions, pepsin digestibility and amino acids concentration of proteins isolated from black mustard and yellow mustard cakes

    Sarker, Ashish Kumar; Saha, Dipti; Begum, Hasina; Zaman, Asaduz; Rahman, Md. Mashiar

    2015-01-01

    As a byproduct of oil production, black and yellow mustard cakes protein are considered as potential source of plant protein for feed applications to poultry, fish and swine industries. The protein contents in black and yellow mustard cakes were 38.17% and 28.80% and their pepsin digestibility was 80.33% and 77.43%, respectively. The proteins were extracted at different pH and maximum proteins (89.13% of 38.17% and 87.76% of 28.80% respectively) isolated from black and yellow mustard cakes at...

  3. In vivo assessment of the ability of condensed tannins to interfere with the digestibility of plant protein in sheep

    To assess the effect of condensed tannin (CT) astringency on the digestibility of protein post-ruminally, CT were purified from four types (accessions) of Mulga (Acacia aneura), and a Leucaena pallida and dosed into sheep as complexes with 15N-plant protein (tannin-protein complexes, TPC), together with an indigestible marker, chromium-EDTA (Cr-EDTA). Each CT treatment dose comprised 12 mg CT, 10 mg 15N-protein, and 2.77 mg of Cr. A protein-only control (same as the other TPC solutions but without any CT) treatment was also included to make a total of six treatments. Treatments were applied in two 6 x 6 Latin Square designs with 72 h between each infusion for each sheep. In the first, the solutions were infused post-ruminally via an abomasal cannula. In the second they were dosed directly into the mouth following an intra-nasal dose of an analogue of vasopressin in an attempt to stimulate the oesophageal groove reflex to direct the solutions more efficiently toward the small intestine. Results showed no detectable effect of CT type on the in vivo digestibility of the 15N-protein. Protein digestibilities were uniformly high, indicative of complete dissociation of the TPC. There was no correlation between protein digestibility, mouth to faeces, and protein digestibility, abomasum to faeces (P > 0.05). In vivo digestibility was also uncorrelated with CT astringencies defined in vitro (P > 0.05). Astringency in vitro was defined as the mg of CT required to achieve half-maximal precipitation of 0.5 mg of protein (bovine serum albumin). In vitro, the most astringent CT (A. aneura 883558), had at least 1.6 times the astringency of the weakest CT (A. aneura 842394). The A. aneura with the weakest CT also contained less than 1/3 the total amount of CT/g leaf dry matter than that with the strongest, highlighting the scope for selection of more nutritionally useful types of A. aneura. Limitations of the in vivo protocol used are discussed and it is concluded that the effect

  4. In vivo assessment of the ability of condensed tannins to interfere with the digestibility of plant protein in sheep

    Andrabi, S.M.; Ritchie, M.M.; Stimson, C.; Horadagoda, A.; Hyde, M.; McNeill, D.M. [MC Franklin Laboratory, Faculty of Veterinary Science, University of Sydney, Camden, NSW (Australia)]. E-mail: karalue@bigpond.net.au

    2005-08-19

    To assess the effect of condensed tannin (CT) astringency on the digestibility of protein post-ruminally, CT were purified from four types (accessions) of Mulga (Acacia aneura), and a Leucaena pallida and dosed into sheep as complexes with {sup 15}N-plant protein (tannin-protein complexes, TPC), together with an indigestible marker, chromium-EDTA (Cr-EDTA). Each CT treatment dose comprised 12 mg CT, 10 mg {sup 15}N-protein, and 2.77 mg of Cr. A protein-only control (same as the other TPC solutions but without any CT) treatment was also included to make a total of six treatments. Treatments were applied in two 6 x 6 Latin Square designs with 72 h between each infusion for each sheep. In the first, the solutions were infused post-ruminally via an abomasal cannula. In the second they were dosed directly into the mouth following an intra-nasal dose of an analogue of vasopressin in an attempt to stimulate the oesophageal groove reflex to direct the solutions more efficiently toward the small intestine. Results showed no detectable effect of CT type on the in vivo digestibility of the {sup 15}N-protein. Protein digestibilities were uniformly high, indicative of complete dissociation of the TPC. There was no correlation between protein digestibility, mouth to faeces, and protein digestibility, abomasum to faeces (P > 0.05). In vivo digestibility was also uncorrelated with CT astringencies defined in vitro (P > 0.05). Astringency in vitro was defined as the mg of CT required to achieve half-maximal precipitation of 0.5 mg of protein (bovine serum albumin). In vitro, the most astringent CT (A. aneura 883558), had at least 1.6 times the astringency of the weakest CT (A. aneura 842394). The A. aneura with the weakest CT also contained less than 1/3 the total amount of CT/g leaf dry matter than that with the strongest, highlighting the scope for selection of more nutritionally useful types of A. aneura. Limitations of the in vivo protocol used are discussed and it is concluded

  5. Ecoengineering high rate anaerobic digestion systems: analysis of improved syntrophic biomethanation catalysts.

    Thiele, J H; Wu, W M; Jain, M K; Zeikus, J G

    1990-04-25

    High performance biomethanation granules with operational specific COD removal rates of 7 kg COD removed/kg SS/d were obtained by ecoengineering conventional, granular, UASB digester sludge using a designed protocol of starvation and selection on a defined volatile fatty acid (VFA) based mineral medium. Addition of low (0.15 mM) sulfate levels to this VFA medium increased the maximum shock-load COD removal rate of the ecoengineered biomethanation granules to 9 kg COD/kg SS/d with specific acetate, propionate, and butyrate removal rates of 111, 28, and 64 mol/g SS/d. Addition of moderate (26 mM) calcium levels inhibited growth and altered the structure of granules. The general cellular, growth, stability, and performance features of these ecoengineered granules are described and discussed in relation to their use as improved biomethanation starter cultures. PMID:18588244

  6. Quantification of the main digestive processes in ruminants: the equations involved in the renewed energy and protein feed evaluation systems.

    Sauvant, D; Nozière, P

    2016-05-01

    The evolution of feeding systems for ruminants towards evaluation of diets in terms of multiple responses requires the updating of the calculation of nutrient supply to the animals to make it more accurate on aggregated units (feed unit, or UF, for energy and protein digestible in the intestine, or PDI, for metabolizable protein) and to allow prediction of absorbed nutrients. The present update of the French system is based on the building and interpretation through meta-analysis of large databases on digestion and nutrition of ruminants. Equations involved in the calculation of UF and PDI have been updated, allowing: (1) prediction of the out flow rate of particles and liquid depending on the level of intake and the proportion of concentrate, and the use of this in the calculation of ruminal digestion of protein and starch from in situ data; (2) the system to take into account the effects of the main factors of digestive interactions (level of intake, proportion of concentrate, rumen protein balance) on organic matter digestibility, energy losses in methane and in urine; (3) more accurate calculation of the energy available in the rumen and the efficiency of its use for the microbial protein synthesis. In this renewed model UF and PDI values of feedstuffs vary depending on diet composition, and intake level. Consequently, standard feed table values can be considered as being only indicative. It is thus possible to predict the nutrient supply on a wider range of diets more accurately and in particular to better integrate energy×protein interactions occurring in the gut. PMID:26696120

  7. Improvement of anaerobic digestion of sewage sludge through microwave pre-treatment.

    Serrano, A; Siles, J A; Martín, M A; Chica, A F; Estévez-Pastor, F S; Toro-Baptista, E

    2016-07-15

    Sewage sludge generated in the activated sludge process is a polluting waste that must be treated adequately to avoid important environmental impacts. Traditional management methods, such as landfill disposal or incineration, are being ruled out due to the high content in heavy metal, pathogens, micropolluting compounds of the sewage sludge and the lack of use of resources. Anaerobic digestion could be an interesting treatment, but must be improved since the biomethanisation of sewage sludge entails low biodegradability and low methane production. A microwave pre-treatment at pilot scale is proposed to increase the organic matter solubilisation of sewage sludge and enhance the biomethanisation yield. The operational variables of microwave pre-treatment (power and specific energy applied) were optimised by analysing the physicochemical characteristics of sewage sludge (both total and soluble fraction) under different pre-treatment conditions. According to the variation in the sCOD and TN concentration, the optimal operation variables of the pre-treatment were fixed at 20,000 J/g TS and 700 W. A subsequent anaerobic digestion test was carried out with raw and pre-treated sewage sludge under different conditions (20,000 J/g TS and 700 W; 20,000 J/g TS and 400 W; and 30,000 J/g TS and 400 W). Although stability was maintained throughout the process, the enhancement in the total methane yield was not high (up to 17%). Nevertheless, very promising improvements were determined for the kinetics of the process, where the rG and the OLR increased by 43% and 39%, respectively, after carrying out a pre-treatment at 20,000 J/g TS and 700 W. PMID:27107391

  8. Comparative studies of peak intensities and chromatographic separation of proteolytic digests, PTMs, and intact proteins obtained by nanoLC-ESI MS analysis at room and elevated temperatures.

    Moskovets, Eugene V; Ivanov, Alexander R

    2016-06-01

    This work demonstrates that the chromatographic separation performed at highly stabilized elevated temperature results in significant improvements in sensitivity, quantitative accuracy, chromatographic resolution, and run-to-run reproducibility of nanoLC-MS analysis of complex peptides mixtures. A newly developed platform was shown to provide conditions for accurate temperature stabilization and temperature homogeneity when performing nanoLC-ESI MS analysis. We quantitatively assessed and compared the recovery of peptides and small proteins from nanoLC columns at room and elevated temperatures. We found that analyses performed at highly stabilized elevated temperatures led to improved detection sensitivity, reproducibility, and chromatographic resolution in reversed-phase LC separation of unmodified peptides (both hydrophilic and hydrophobic), post-translationally modified peptides (O-phosphorylated), and small intact proteins. The analytical benefits of elevated temperatures for qualitative and quantitative proteomic LC-MS profiling were demonstrated using mixtures of synthetic peptides, tryptic digests of mixtures of model proteins, and digested total lysates of isolated rat kidney mitochondria. The effect of elevated temperature on the ion suppression was also demonstrated. Graphical Abstract A fragment of overlaid LC retention time-m/z planar views demonstrates the improved separation performance in the analysis of a complex peptide mixture at elevated temperature. Retention time-m/z 2D peptide features detected at 60 °C (magenta) were matched and aligned with features detected at room temperature (green). PMID:26898204

  9. Comparative evaluation of standardized ileal amino acid digestibility in protein supplements for piglets.

    Eklund, M; Sauer, N; Hörner, S; Rademacher, M; Mosenthin, R

    2012-12-01

    Standardized ileal digestibility (SID) of AA was determined in 6 protein ingredients for piglets. A basal diet based on corn (Zea mays) starch and casein was supplemented with fluid-bed-dried porcine intestinal mucosa hydrolysate, spray-dried porcine intestinal mucosa hydrolysate, soy (Glycine max) protein concentrate, 2 batches of soy protein, or full-fat soybeans. The SID of AA did not differ between the 4 soybean products (P > 0.05). Compared to most SID values in the 4 soybean products, SID of AA were lower in the 2 porcine intestinal mucosa hydrolysates (P ≤ 0.05). In conclusion, although the initial trypsin inhibitor contents in the raw soybeans have not been determined, high SID values in the 4 soybean products indicate that the different processing procedures used to manufacture these products were efficient to inactivate trypsin inhibitors. For most AA in the 2 porcine intestinal mucosa hydrolysates, drying procedure did not affect SID of AA, but SID values were generally lower compared to the 4 soybean products. PMID:23365314

  10. Identification of cereal proteins by analysis of in-gel digested nonspecific peptides by MALDI-TOF MS

    Chmelík, Josef; Řehulka, Pavel; Allmaier, G.

    2004, s. 48. ISBN 963 7067 108. [IMMS. Informal Meeting on Mass Spectrometry /22./. Tokaj (HU), 02.05.2004-06.05.2004] R&D Projects: GA MZe QD1023 Institutional research plan: CEZ:AV0Z4031919 Keywords : MALDI-TOF MS * cereal proteins * in-gel digest Subject RIV: CB - Analytical Chemistry, Separation

  11. In vitro availability of iron and zinc: Effects of the type, concentration and fractions of digestion products of the protein

    Pérez-Llamas, F.; Diepenmaat-Wolters, M.G.E.; Zamora, S.

    1996-01-01

    An in vitro dialysis method was employed to determine the effect on the Fe and Zn absorption of the type (beef, pork and soyabean) and the amount (10 and 30 g/kg) of protein present. In addition, the effects of low- and high-molecular-weight (LMW and HMW respectively) digestion products were investi

  12. Enhancement of ACE and prolyl oligopeptidase inhibitory potency of protein hydrolysates from sardine and tuna by-products by simulated gastrointestinal digestion.

    Martínez-Alvarez, Oscar; Batista, Irineu; Ramos, Cristina; Montero, Pilar

    2016-04-20

    This work was focused on the study of the bioactive potential of three fish protein hydrolysates, one of them prepared from industrial sardine by-products (head and viscera) and the others from tuna by-products (head, and muscle and viscera). These protein hydrolysates exhibited moderate ability to inhibit Angiotensin Converting Enzyme or ACE (IC50 between 0.24-1.16 mg dry weight per ml) and prolyl oligopeptidase or PO (IC50 between 3.30-9.57 mg ml(-1)), those obtained from tuna by-products being the most effective. Overall, ACE- and PO-inhibiting activities were enhanced by sequential nanofiltration through 3 and 1 kDa MWCO membranes (IC50 between 0.02-0.16 mg ml(-1) (ACE) and 1.10-4.21 mg ml(-1) (PO)). The inhibitory properties of the hydrolysates were greatly improved by in vitro gastric digestion, and were barely affected by further intestinal digestion. The digested tuna hydrolysates, mainly that from heads, proved to be the best source of PO- and ACE- inhibiting molecules (IC50 = 0.16 mg ml(-1) (ACE) and 1.04 mg ml(-1) (PO)) and could be potential new ingredients in food with interest in the prevention or treatment of cardiovascular and neurological diseases. PMID:27045751

  13. Effect of radiation processing on in vitro protein digestibility and availability of calcium, phosphorus and iron of peanut

    Hassan, Amro B.; Diab, Eiman E.; Mahmoud, Nagat S.; Elagib, Randa A. A.; Rushdi, Mohamed A. H.; Osman, Gammaa A. M.

    2013-10-01

    The effect of gamma irradiation of two peanut cultivars (Sodari and Madani) on protein content, in vitro protein digestibility and availability of calcium, phosphorus and iron was determined. Seeds were treated with gamma irradiation at dose levels of 1.0, 1.5 and 2.0 kGy. Total protein in seeds was not changed significantly by irradiation. However, the in vitro protein digestibility was decreased for both cultivars. In addition, the irradiation also caused an increment on the available calcium, phosphorus and iron for both cultivars. Moreover, radiation processing caused an increment on tannin content of the seeds especially at the dose 2 kGy for both cultivars. Regarding these results, irradiation treatment of peanut up to 2 kGy can be used as an effective alternative method to chemical treatments for insect disinfestation and microbial disinfection.

  14. Eco-efficient post treatment of digestate from farm and collective biogas plants to improve nutrients (N&P) recycling

    Trémier, Anne; Béline, Fabrice; Déchaux, Claire;

    opportunity to improve nutrient recycling from organic waste through the development of an eco-effi cient post-treatment system. In this context, LCA was applied to evaluate the sustainability of diff erent raw digestate post-treatment technologies regarding recycling of nutrients from agricultural and...... organic waste to agricultural soils for decreased resource depletion and climate mitigation. Substitution of the use of N and P mineral fertilizers with recycled soil health improver or organic fertilizers products as function of fi ve diff erent post-treatment technologies and raw digestate......Anaerobic digestion (AD) of organic waste from agriculture and others sectors is a widely used technology which shows increasing implementation due to its capacity to produce renewable energy and also to reduce greenhouse gas emissions from waste management. The development of AD is also an...

  15. Effect of radiation processing on antinutrients, in-vitro protein digestibility and protein efficiency ratio bioassay of legume seeds

    El-Niely, Hania F.G. [Food Irradiation Research Department, National Center for Radiation Research and Technology, Atomic Energy Authority, P.O. Box 29, Nasr City, Cairo (Egypt)]. E-mail: elniely@hotmail.com

    2007-06-15

    The effects of irradiation (dose levels of 5, 7.5 and 10 kGy) on nutritive characteristics of peas (Pisum satinum L), cowpeas (Vigna unguiculata L.Walp), lentils (Lens culinaris Med), kidneybeans (Phaseolus vulgaris L), and chickpeas (Cicer arietinum L) were examined. Analyses included proximate composition, levels of anti-nutrients (phytic acid, tannins), available lysine (AL), in vitro protein digestibility (IVPD), and protein efficiency ratio (PER) in the growing rat. The results showed that moisture, crude protein, crude fat, crude fiber, and ash were unchanged by the irradiation. Radiation processing significantly (p<0.05) reduced the levels of phytic acid (PA), tannins (TN), and AL. IVPD and PER were significantly enhanced in a dose-dependent manner, relative to unirradiated control samples, for all legumes. The data sets for each legume exhibited high correlation coefficients between radiation dose and PA, TN, AL, IVPD, and PER. These results demonstrate the benefits of irradiation on the nutritional properties of these legumes.

  16. Effect of radiation processing on antinutrients, in-vitro protein digestibility and protein efficiency ratio bioassay of legume seeds

    El-Niely, Hania F. G.

    2007-06-01

    The effects of irradiation (dose levels of 5, 7.5 and 10 kGy) on nutritive characteristics of peas ( Pisum satinum L), cowpeas ( Vigna unguiculata L.Walp), lentils ( Lens culinaris Med), kidneybeans ( Phaseolus vulgaris L), and chickpeas ( Cicer arietinum L) were examined. Analyses included proximate composition, levels of anti-nutrients (phytic acid, tannins), available lysine (AL), in vitro protein digestibility (IVPD), and protein efficiency ratio (PER) in the growing rat. The results showed that moisture, crude protein, crude fat, crude fiber, and ash were unchanged by the irradiation. Radiation processing significantly ( p<0.05) reduced the levels of phytic acid (PA), tannins (TN), and AL. IVPD and PER were significantly enhanced in a dose-dependent manner, relative to unirradiated control samples, for all legumes. The data sets for each legume exhibited high correlation coefficients between radiation dose and PA, TN, AL, IVPD, and PER. These results demonstrate the benefits of irradiation on the nutritional properties of these legumes.

  17. Effect of radiation processing on antinutrients, in-vitro protein digestibility and protein efficiency ratio bioassay of legume seeds

    The effects of irradiation (dose levels of 5, 7.5 and 10 kGy) on nutritive characteristics of peas (Pisum satinum L), cowpeas (Vigna unguiculata L.Walp), lentils (Lens culinaris Med), kidneybeans (Phaseolus vulgaris L), and chickpeas (Cicer arietinum L) were examined. Analyses included proximate composition, levels of anti-nutrients (phytic acid, tannins), available lysine (AL), in vitro protein digestibility (IVPD), and protein efficiency ratio (PER) in the growing rat. The results showed that moisture, crude protein, crude fat, crude fiber, and ash were unchanged by the irradiation. Radiation processing significantly (p<0.05) reduced the levels of phytic acid (PA), tannins (TN), and AL. IVPD and PER were significantly enhanced in a dose-dependent manner, relative to unirradiated control samples, for all legumes. The data sets for each legume exhibited high correlation coefficients between radiation dose and PA, TN, AL, IVPD, and PER. These results demonstrate the benefits of irradiation on the nutritional properties of these legumes

  18. Hydrocolloids Decrease the Digestibility of Corn Starch, Soy Protein, and Skim Milk and the Antioxidant Capacity of Grape Juice

    Yi, Yue; Jeon, Hyeong-Ju; Yoon, Sun; Lee, Seung-Min

    2015-01-01

    Hydrocolloids have many applications in foods including their use in dysphagia diets. We aimed to evaluate whether hydrocolloids in foods affect the digestibility of starch and protein, and their effects on antioxidant capacity. The thickening hydrocolloids: locust bean gum and carboxymethyl cellulose, and the gel-forming agents: agar agar, konjac-glucomannan, and Hot & Soft Plus were blended with corn starch and soy protein, skim milk, or grape juice and were examined for their in vitro-dige...

  19. Comparison of Seven Chemical Pretreatments of Corn Straw for Improving Methane Yield by Anaerobic Digestion

    Song, Zilin; GaiheYang,; Liu, Xiaofeng; Yan, Zhiying; Yuan, Yuexiang; Liao, Yinzhang

    2014-01-01

    Agriculture straw is considered a renewable resource that has the potential to contribute greatly to bioenergy supplies. Chemical pretreatment prior to anaerobic digestion can increase the anaerobic digestibility of agriculture straw. The present study investigated the effects of seven chemical pretreatments on the composition and methane yield of corn straw to assess their effectiveness of digestibility. Four acid reagents (H2SO4, HCl, H2O2, and CH3COOH) at concentrations of 1%, 2%, 3%, and ...

  20. In vitro digestion of Pickering emulsions stabilized by soft whey protein microgel particles: influence of thermal treatment.

    Sarkar, Anwesha; Murray, Brent; Holmes, Melvin; Ettelaie, Rammile; Abdalla, Azad; Yang, Xinyi

    2016-04-13

    Emulsions stabilized by soft whey protein microgel particles have gained research interest due to their combined advantages of biocompatibility and a high degree of resistance to coalescence. We designed Pickering oil-in-water emulsions using whey protein microgels by a facile route of heat-set gel formation followed by mechanical shear and studied the influence of heat treatment on emulsions stabilized by these particles. The aim of this study was to compare the barrier properties of the microgel particles and heat-treated fused microgel particles at the oil-water interface in delaying the digestion of the emulsified lipids using an in vitro digestion model. A combination of transmission electron microscopy and surface coverage measurements revealed an increased coverage of heat-treated microgel particles at the interface. The heat-induced microgel particle aggregation and, therefore, a fused network at the oil-water interface were more beneficial to delay the rate of digestion in the presence of pure lipase and bile salts compared to intact whey protein microgel particles, as shown by the measurements of zeta potential and free fatty acid release, plus theoretical calculations. However, simulated gastric digestion with pepsin impacted significantly on such barrier effects, due to the proteolysis of the particle network at the interface irrespective of the heat treatment, as visualized using sodium dodecyl sulfate polyacryl amide gel electrophoresis measurements. PMID:26959339

  1. Effect of protein corona magnetite nanoparticles derived from bread in vitro digestion on Caco-2 cells morphology and uptake.

    Di Silvio, Desirè; Rigby, Neil; Bajka, Balazs; Mackie, Alan; Baldelli Bombelli, Francesca

    2016-06-01

    Nanoparticles (NPs) in biological fluids immediately interact with proteins forming a biomolecular corona (PC) that imparts their biological identity. While several studies on the formation of the PC in human plasma have been reported, the PC of orally administrated NPs has been less investigated, mostly in the presence of a food matrix. In fact, food matrixes when digested are subject of several dynamic changes that will certainly affect the PC formed on the NPs. The lack of studies on this topic is clearly related to the difficulty in isolating representative PC NPs from such a complex environment. In this work magnetite NPs were added to in vitro simulated digestion simultaneously with bread and PC NPs were isolated after gastric and duodenal phases by sucrose gradient ultracentrifugation (UC). The PC NPs were characterized in terms of size and protein composition. Translocation studies were then performed on Caco-2 monolayers in a serum free environment and cell morphology was characterized by confocal microscopy. PC NPs isolated from gastric and duodenal phases were different in size, surface charge and protein corona composition. NP cellular uptake was enhanced by the digestive PC inducing morphology changes in the cell monolayer. Overall, in this work we were able to isolate PC NPs from digested fluids in the presence of a food matrix and study their biological response on Caco-2 cells. PMID:26520468

  2. Digestibility of Protein and Energy and Protein Value of Some Roughages for Growing Swine

    D. Carlson; Johansen, H.N.

    1997-01-01

    The present investigatin was undertaken to study the faecal degestibility of dry matter organic matter, protein and fibre for growing pigs fed on high level roughage. The three roughage types studied were clovergrass, clovergrass silage and wholecrop pea-barley silage. The study was conducted in two experimental periods (exp 1 and exp 2). Ineach experiment 10 crossbred female pigs (5 x 2 littermates) were diveded into two groups fed either fresh clovergrass or frozen and thawed clovergrass (e...

  3. A Comparative Study of In-Gel Digestions Using Microwave and Pressure-Accelerated Technologies

    Alvarado, Rudy; Tran, Diana; Ching, Bonnie; Phinney, Brett S.

    2010-01-01

    One of the most popular methods to prepare tryptic peptides for bottom-up proteomic analysis is in-gel digestion. To date, there have been few studies comparing various digestion methods. In this study, we compare the efficiency of several popular in-gel digestion methods, along with new technologies that may improve digestion efficiency, using a human epidermoid carcinoma cell lysate protein standard. The efficiency of each protocol was based on the average number of proteins identified and ...

  4. Identification and characterization of antioxidant peptides obtained by gastrointestinal digestion of amaranth proteins.

    Orsini Delgado, María C; Nardo, Agustina; Pavlovic, Marija; Rogniaux, Hélène; Añón, María C; Tironi, Valeria A

    2016-04-15

    The objective of the present work was to separate and identify antioxidant peptides from a simulated gastrointestinal digest (Id) from Amaranthus mantegazzianus proteins (I), which has previously been demonstrated to have this activity. I and Id were separated by preparative RP-HPLC. Fractions were evaluated by the ORAC method and the more active ones were analyzed by LC-MS/MS. Each fraction presented diverse peptides from different proteins, most of them from the 11S globulin. After grouping the peptides from 11S globulin according to their overlapping sequences, and based on previous information about structure-activity relationships, ten sequences were synthesized, in order to evaluate their antioxidant activity. Four peptides presented interesting activity: AWEEREQGSR>YLAGKPQQEH∼IYIEQGNGITGM∼TEVWDSNEQ. They exhibited some of the structural characteristics already known to demonstrate this activity, all of them containing at least one bulky aromatic residue. All belonged to little structured, internal or exposed regions of the acid subunit of the 11S globulin. PMID:26675853

  5. Environmental sustainability of an energy self-sufficient sewage treatment plant: improvements through DEMON and co-digestion.

    Schaubroeck, Thomas; De Clippeleir, Haydée; Weissenbacher, Norbert; Dewulf, Jo; Boeckx, Pascal; Vlaeminck, Siegfried E; Wett, Bernhard

    2015-05-01

    It is still not proven that treatment of sewage in a wastewater treatment plant (WWTP) is (in every case) environmentally friendly. To address this matter, we have applied a state-of-the-art life cycle assessment (LCA) to an energy self-sufficient WWTP in Strass (Austria), its supply chain and the valorization of its 'products': produced electricity out of biogas from sludge digestion and the associated stabilized digestate, applied as agricultural fertilizer. Prominent aspects of our study are: a holistic environmental impact assessment, measurement of greenhouse gas emissions (including N2O), and accounting for infrastructure, replacement of conventional fertilizers and toxicity of metals present in the stabilized digestate. Additionally, the environmental sustainability improvement by implementing one-stage partial nitritation/anammox (e.g. DEMON(®)) and co-digestion was also assessed. DEMON on the digesters reject water leads to a considerable saving of natural resources compared to nitritiation/denitritation (about 33% of the life cycle resource input), this through the lowering of sludge consumption for N-removal, and thus increasing electricity production via a higher sludge excess. However, its N2O emission could be restrained through further optimization as it represents a large share (30-66%) of the plants' damaging effect on human health, this through climate change. The co-substrate addition to the digester resulted in no significant improvement of the digestion process but induced net electricity generation. If respective amounts of conventional fertilizers are replaced, the land application of the stabilized digestate is environmentally friendly through prevention of natural resource consumption and diversity loss, but possibly not regarding human health impact due the presence of toxic heavy metals, mainly Zn, in the digestate. The outcomes show that the complete life cycle results in a prevention of resource extraction from nature and a potential

  6. 75 FR 82428 - VASRD Improvement Forum-Updating Disability Criteria for the Genitourinary System, Digestive...

    2010-12-30

    ... System, Dental Conditions, and Infectious Diseases, Immune Disorders and Nutritional Deficiencies AGENCY... System, Digestive System, Dental Conditions, and Infectious Diseases, Immune Disorders and Nutritional..., Immune Disorders and Nutritional Deficiencies (38 CFR 4.88-4.89), (2) the Digestive System (38 CFR...

  7. Pancreatic lipase-related protein 2 digests fats in human milk and formula in concert with gastric lipase and carboxyl ester lipase

    Johnson, Karin; Ross, Leah; Miller, Rita; Xiao, Xunjun; Lowe, Mark E.

    2013-01-01

    INTRODUCTION Dietary fats must be digested into fatty acids and monoacylglycerols prior to absorption. In adults, colipase-dependent pancreatic triglyceride lipase (PTL) contributes significantly to fat digestion. In newborn rodents and humans, the pancreas expresses low levels of PTL. In rodents, a homologue of PTL, pancreatic lipase related protein 2 (PLRP2) and carboxyl ester lipase (CEL) compensate for the lack of PTL. In human newborns, the role for PLRP2 in dietary fat digestion is uncl...

  8. Review of feedstock pretreatment strategies for improved anaerobic digestion: From lab-scale research to full-scale application.

    Carrere, Hélène; Antonopoulou, Georgia; Affes, Rim; Passos, Fabiana; Battimelli, Audrey; Lyberatos, Gerasimos; Ferrer, Ivet

    2016-01-01

    When properly designed, pretreatments may enhance the methane potential and/or anaerobic digestion rate, improving digester performance. This paper aims at providing some guidelines on the most appropriate pretreatments for the main feedstocks of biogas plants. Waste activated sludge was firstly investigated and implemented at full-scale, its thermal pretreatment with steam explosion being most recommended as it increases the methane potential and digestion rate, ensures sludge sanitation and the heat needed is produced on-site. Regarding fatty residues, saponification is preferred for enhancing their solubilisation and bioavailability. In the case of animal by-products, this pretreatment can be optimised to ensure sterilisation, solubilisation and to reduce inhibition linked to long chain fatty acids. With regards to lignocellulosic biomass, the first goal should be delignification, followed by hemicellulose and cellulose hydrolysis, alkali or biological (fungi) pretreatments being most promising. As far as microalgae are concerned, thermal pretreatment seems the most promising technique so far. PMID:26384658

  9. Comparison of two different fecal collection methods for protein digestibility and amino acid availability coefficients of three animal protein sources for sunshine bass (Morone chrysops x Morone saxatilis)

    Apparent digestibility coefficients (ADCs) for protein and individual amino acid availabilities in menhaden fish meal (MEN) and two grades of poultry by-product meal (PBM) were determined for market-size (500 g) sunshine bass using two different fecal collection methods, passive netting (net) or man...

  10. Effects of synchronizing starch and protein degradation in rumen on fermentation, nutrient utilization and total tract digestibility in sheep

    Birgul Bozan

    2010-01-01

    Full Text Available The objective of this experiment was to investigate the effects of synchronizing the dietary starch and crude protein (CP degradation in the rumen on nutrient utilization, fermentation, and total tract digestibility in sheep. The four diets were formulated with different rates of starch and CP release in the rumen but with similar metabolic energy, starch, and CP. The diets were slowly degradable starch, slowly degradable protein; slowly degradable starch, rapidly degradable protein; rapidly degradable starch, rapidly degradable protein; and rapidly degradable starch, slowly degradable protein. The diets were fed to four cannulated sheep ad libi- tumin two equal portions, using a 4x4 Latin square design. Dry matter intake (DM was not influenced by either the rate of starch or protein degradation. There was no significant effect of dietary treatment on the digestibility of DM, organic matter, starch, CP, neutral detergent fiber or acid detergent fiber in the rumen and total tract. Ruminal pH was greater for sheep fed slowly degrad- able starch diets than rapidly degradable starch (P< 0.05. Ruminal total volatile fatty acid concentrations were not affected by treatments but the molar proportions of propionic acid were greater for sheep fed rapid- ly degradable starch diets than slowly degradable starch diets (P< 0.05. The ratios of acetic acid (A to pro- pionic acid (P were higher for sheep fed slowly degradable starch diets than rapidly degradable starch diets (P< 0.05. Ruminal ammonia-N concentrations were not affected from the degradability characteristics of protein. Rumen pH and A:P were higher in diets containing slowly degradable starch than in diets rapidly degradable starch. Propionic acid was higher in diets containing rapidly degradable starch than in diets con- taining slowly degradable starch. Rumen fermentation and utilization of nutrients in the rumen affected starch degradability more than protein degradability. Synchronizing

  11. Effect of non-protein nitrogen and fodder legumes on the intake, digestibility and growth parameters of buffaloes

    Two in vivo digestibility studies and three nylon bag studies were conducted using four rumen fistulated male buffaloes to investigate the role of supplements of tree legumes and non-protein nitrogen on the feed intake, rumen function and growth of buffaloes given a basal diet of rice straw. Straw dry matter (DM) intake and digestibility were increased by urea treatment compared with urea supplementation. Inclusion of legume tree leaves in the diet increased the in vivo DM digestibility of both untreated and treated straw, but the increment was much higher for untreated straw. A supplementation of legumes also increased the in vivo nitrogen (N) digestibility of the diet of buffaloes. A trend towards an increase in straw intake with legume supplementation was also observed. Of the tree fodder legumes tested, Erythrina lithosperma had the highest potential for providing protein. Inclusion of legumes in the diet increased the DM and N degradation rates of feedstuff. In a growth trial of grazing female buffalo calves, the inclusion of fodder legumes increased the weight gain when compared with grazing alone. (author). 6 refs, 5 tabs

  12. Improving decoy databases for protein folding algorithms

    Lindsey, Aaron

    2014-01-01

    Copyright © 2014 ACM. Predicting protein structures and simulating protein folding are two of the most important problems in computational biology today. Simulation methods rely on a scoring function to distinguish the native structure (the most energetically stable) from non-native structures. Decoy databases are collections of non-native structures used to test and verify these functions. We present a method to evaluate and improve the quality of decoy databases by adding novel structures and removing redundant structures. We test our approach on 17 different decoy databases of varying size and type and show significant improvement across a variety of metrics. We also test our improved databases on a popular modern scoring function and show that they contain a greater number of native-like structures than the original databases, thereby producing a more rigorous database for testing scoring functions.

  13. Comparison of cake compositions, pepsin digestibility and amino acids concentration of proteins isolated from black mustard and yellow mustard cakes.

    Sarker, Ashish Kumar; Saha, Dipti; Begum, Hasina; Zaman, Asaduz; Rahman, Md Mashiar

    2015-01-01

    As a byproduct of oil production, black and yellow mustard cakes protein are considered as potential source of plant protein for feed applications to poultry, fish and swine industries. The protein contents in black and yellow mustard cakes were 38.17% and 28.80% and their pepsin digestibility was 80.33% and 77.43%, respectively. The proteins were extracted at different pH and maximum proteins (89.13% of 38.17% and 87.76% of 28.80% respectively) isolated from black and yellow mustard cakes at pH 12. The purity of isolated proteins of black and yellow mustard cakes was 89.83% and 91.12% respectively and their pepsin digestibility was 89.67% and 90.17% respectively which assigned the absence of antinutritional compounds. It was found that essential amino acids isoleucine, lysine, methionine, threonine and tryptophan and non essential amino acids arginine and tyrosine were present in greater concentration in black mustard cake protein whereas other amino acids were higher in yellow mustard cake protein. PMID:25859422

  14. Serine protease P-IIc is responsible for the digestion of yolk proteins at the late stage of silkworm embryogenesis.

    Wang, Dandan; Zhang, Yan; Dong, Zhaoming; Guo, Pengchao; Ma, Sanyuan; Guo, Kaiyu; Xia, Qingyou; Zhao, Ping

    2016-07-01

    In silkworms, yolk proteins comprise vitellin, egg-specific protein and 30K proteins, which are sequentially degraded by endogenous proteases strictly regulated during embryogenesis. Although the process has been extensively investigated, there is still a gap in the knowledge about the degradation of silkworm yolk proteins on the last two days of embryonic development. In the present study, we isolated and purified a gut serine protease P-IIc, which demonstrated optimal activity at 25 °C and pH 11. Semi-quantitative RT-PCR combined with western blotting showed that P-IIc was actively expressed and significantly accumulated in the gut on the last two days of embryogenesis. When natural yolk proteins were incubated with P-IIc in vitro, vitellin and ESP were selectively degraded. P-IIc also demonstrated activity towards 30K proteins as evidenced by rapid and complete digestion of BmLP1 and partial digestion of BmLP2 and BmLP3. Furthermore, RNAi knockdown of P-IIc in silkworm embryos significantly reduced the degradation rate of residual yolk proteins on embryonic day 10. Taken together, our results indicate that P-IIc represents an embryonic gut protease with a relatively broad substrate specificity, which plays an important role in the degradation of yolk proteins at the late stage of silkworm embryogenesis. PMID:27137459

  15. Effects of processing moisture on the physical properties and in vitro digestibility of starch and protein in extruded brown rice and pinto bean composite flours.

    Sumargo, Franklin; Gulati, Paridhi; Weier, Steven A; Clarke, Jennifer; Rose, Devin J

    2016-11-15

    The influence of pinto bean flour and processing moisture on the physical properties and in vitro digestibility of rice-bean extrudates has been investigated. Brown rice: pinto bean flour (0%, 15%, 30%, and 45% bean flour) were extruded under 5 moisture conditions (17.2%, 18.1%, 18.3%, 19.5%, and 20.1%). Physical properties [bulk density, unit density, radial expansion, axial expansion, overall expansion, specific volume, hardness, color, water solubility index, and water absorption index] and in vitro starch and protein digestibilities were determined. Increasing bean flour and processing moisture increased density and hardness while decreasing expansion. Rapidly digestible starch decreased and resistant starch increased as bean substitution and processing moisture increased. In vitro protein digestibility increased with increasing bean flour or with decreasing processing moisture. Incorporating bean flour into extruded snacks can negatively affect physical attributes (hardness, density, and expansion) while positively affecting in vitro starch (decrease) and protein (increase) digestibilities. PMID:27283689

  16. Effects of electron beam irradiation on chemical composition, antinutritional factors, ruminal degradation and in vitro protein digestibility of canola meal

    Taghinejad-Roudbaneh, M., E-mail: mtaghinejad@iaut.ac.i [Department of Animal Science, Faculty of Agriculture, Islamic Azad University, Tabriz Branch, P.O. Box 51589, Tabriz (Iran, Islamic Republic of); Ebrahimi, S.R. [Department of Animal Science, Faculty of Agriculture, Shahr-e-Qods Branch, Islamic Azad University, P.O. Box 37515-374, Shahr-e-Qods (Iran, Islamic Republic of); Azizi, S. [Department of Clinical Sciences, Faculty of Veterinary Medicine, Urmia University, P.O. Box 57155-1177, Urmia (Iran, Islamic Republic of); Shawrang, P. [Nuclear Science and Technology Research Institute, Agricultural, Medical and Industrial Research School, Atomic Energy Organization of Iran, P.O. Box 31485-498, Karaj (Iran, Islamic Republic of)

    2010-12-15

    The aim of the present study was to determine the impact of electron beam (EB) irradiation at doses of 15, 30 and 45 kGy on the nutritional value of canola meal. The phytic acid and total glucosinolate content of EB-irradiated canola meal decreased as irradiation doses increased (P<0.01). From in situ results, irradiation of canola meal at doses of 45 kGy decreased (P<0.05) the effective degradibility of crude protein (CP) by 14%, compared with an untreated sample. In vitro CP digestibility of EB-irradiated canola meal at doses of 15 and 30 kGy was improved (P<0.05). Electrophoresis results showed that napin and cruciferin sub-units of 30 and 45 kGy EB-irradiated canola meal were more resistant to degradation, compared with an untreated sample. Electron beam irradiation was effective in protecting CP from ruminal degradation and reducing antinutritional factors of irradiated canola meal.

  17. Effects of electron beam irradiation on chemical composition, antinutritional factors, ruminal degradation and in vitro protein digestibility of canola meal

    Taghinejad-Roudbaneh, M.; Ebrahimi, S. R.; Azizi, S.; Shawrang, P.

    2010-12-01

    The aim of the present study was to determine the impact of electron beam (EB) irradiation at doses of 15, 30 and 45 kGy on the nutritional value of canola meal. The phytic acid and total glucosinolate content of EB-irradiated canola meal decreased as irradiation doses increased ( P<0.01). From in situ results, irradiation of canola meal at doses of 45 kGy decreased ( P<0.05) the effective degradibility of crude protein (CP) by 14%, compared with an untreated sample. In vitro CP digestibility of EB-irradiated canola meal at doses of 15 and 30 kGy was improved ( P<0.05). Electrophoresis results showed that napin and cruciferin sub-units of 30 and 45 kGy EB-irradiated canola meal were more resistant to degradation, compared with an untreated sample. Electron beam irradiation was effective in protecting CP from ruminal degradation and reducing antinutritional factors of irradiated canola meal.

  18. Simplified sample preparation method for protein identification by matrix-assisted laser desorption/ionization mass spectrometry: in-gel digestion on the probe surface

    Stensballe, A; Jensen, Ole Nørregaard

    2001-01-01

    -gel digestion of protein samples directly on the MALDI-MS metal probe. Removal of detergent and reagents as well as protein reduction and S-alkylation were performed prior to cutting of protein samples from the polyacrylamide gel slab. The general utility of this approach was demonstrated by on-probe digestion...... preparation protocol while being less labour intensive and more cost-effective due to minimal consumption of reagents, enzymes and consumables. Preliminary data obtained on a MALDI quadrupole-TOF tandem mass spectrometer demonstrated the utility of the on-probe digestion protocol for peptide mass mapping and...

  19. Anaerobic digestate from biogas production as a resource for improving soil fertility: effects on crop yield and soil properties

    Pastorelli, Roberta; Lagomarsino, Alessandra; Vignozzi, Nadia; Valboa, Giuseppe; Papini, Rossella; Fabiani, Arturo; Simoncini, Stefania; Mocali, Stefano; Piccolo, Raimondo

    2013-04-01

    Soil fertility is fundamental in determining crops productivity in all farming systems. Production of biogas through anaerobic digestion of energy crops generates residues that can represent a valuable resource to sustain and improve soil fertility and to increase soil organic matter content. Residues from anaerobic digestion contain organic fractions and available nutrients, that can thus be returned to the cultivation soil as fertilizer and soil conditioner. However, some unknown aspects of digested residues utilization remain to explore: i) the nutrient supply and the real potential for mineral fertilization substitution, ii) the impact on the structure and functioning of soil microbial communities, iii) the direct and indirect effects on soil structure, organic matter and C mineralization. The aim of the present research was to gain a better understanding of these aspects, evaluating the effects of anaerobic digestate application on soil properties and maize yield. With the main focus of comparing mineral fertilization (250 Kg N ha-1) with digested residues addition (at the dose of 25 % and 50 % of mineral fertilizer), a triplicate sets of plots were designed in a field experiment on a silty-clay loam soil in the southern Po Valley (Italy). The amount of applied residues was calculated according to its N content in order to fertilizer each plots with the same amount of total nitrogen. Residues from digestion showed a N content of 0.4 % (60 % as N-NH4) and a C/N ratio of 3. Changes in soil quality after residues application were studied with a holistic approach, involving microbiological, physical and chemical aspects of soil fertility. In particular, we determined: the abundance and diversity of bacterial and fungal soil communities; the soil organic matter content, its distribution within soil aggregates and the C mineralization potential; cation exchange capacity; the main macro and micro nutrients; bulk density; aggregate stability. No significant

  20. Effect of replacement of fish meal by potato protein concentrate in the diet for rainbow trout on feeding rate, digestibility and growth

    Xie, Shougi; Jokumsen, Alfred

    1999-01-01

    increased incorporation levels of PPC. Apparent digestibility of dry matter, crude protein and ash increased with increased proportion of dietary PPC, while there was no significant effect on the apparent digestibility of crude fat. The incorporation of 5.6% PPC decreased growth rate and 8.9% PPC decreased...

  1. Improving nutritive value of a North African range grass (Stipa tenacissima) : Effect of dung ash and urea treatment on digestion by goats

    Genin, Didier; Khorchani, T; Hammadi, M

    2007-01-01

    In and zones of North Africa, hays formerly harvested from native range forages such as Alfa (Stipa tenacissima), can provide alternative diets for livestock during periods of forage scarcity. However, they usually constitute low-quality forages. Soaking Alfa hay in alkaline solutions prepared from dung ash, with the addition of urea, was evaluated as a potential economic treatment for improving rumen digestibility. A digestion trial was conducted using 3-year-old male goats to compare digest...

  2. Effect of hemoglobin powder substituted for fishmeal on growth performance, protein digestibility, and trypsin gene expression in Litopenaeus vannamei

    Duangrat Chookird

    2010-05-01

    Full Text Available Recent increases in the price and demand of fishmeal, the primary protein source in shrimp feeds, have caused asearch for alternative protein sources. Hemoglobin powder (HE is a by-product produced by separating hemoglobin fromplasma of farm animal un-coagulant blood. HE contains high protein content but low lipid content, and thus has highpotential for fishmeal substitution.A six week feeding trial was carried out to investigate effects of HE substituted for fishmeal protein on growth performance,protein digestibility and trypsin gene expression in Pacific white shrimp (Litopenaeus vannamei. Six diets with0%, 12.5%, 25%, 50%, 75% and 100% of HE replacing fishmeal protein were fed four times daily to six groups of shrimp withan average initial weight of 3.53 g/shrimp. Growth of shrimp decreased with increasing level of HE substitution. Although the12.5% HE substitution caused significantly lower final weight, weight gain, SGR, feed intake, PER and PPV in comparisonwith the control diet, FCR of this diet was not statistically different (p0.05. In-vitro and in-vivo protein digestibility of 12.5% HE substitution were significantly lower than that of the controlgroup in which the trypsin gene expression of shrimp fed 12.5% HE substituted diet was the highest.

  3. Principles of lysosomal membrane digestion: stimulation of sphingolipid degradation by sphingolipid activator proteins and anionic lysosomal lipids.

    Kolter, Thomas; Sandhoff, Konrad

    2005-01-01

    Sphingolipids and glycosphingolipids are membrane components of eukaryotic cell surfaces. Their constitutive degradation takes place on the surface of intra-endosomal and intra-lysosomal membrane structures. During endocytosis, these intra-lysosomal membranes are formed and prepared for digestion by a lipid-sorting process during which their cholesterol content decreases and the concentration of the negatively charged bis(monoacylglycero)phosphate (BMP)--erroneously also called lysobisphosphatidic acid (LBPA)--increases. Glycosphingolipid degradation requires the presence of water-soluble acid exohydrolases, sphingolipid activator proteins, and anionic phospholipids like BMP. The lysosomal degradation of sphingolipids with short hydrophilic head groups requires the presence of sphingolipid activator proteins (SAPs). These are the saposins (Saps) and the GM2 activator protein. Sphingolipid activator proteins are membrane-perturbing and lipid-binding proteins with different specificities for the bound lipid and the activated enzyme-catalyzed reaction. Their inherited deficiency leads to sphingolipid- and membrane-storage diseases. Sphingolipid activator proteins not only facilitate glycolipid digestion but also act as glycolipid transfer proteins facilitating the association of lipid antigens with immunoreceptors of the CD1 family. PMID:16212488

  4. Thermal wet oxidation improves anaerobic biodegradability of raw and digested biowaste

    Lissens, G.; Thomsen, Anne Belinda; De Baere, L.;

    2004-01-01

    Anaerobic digestion of solid biowaste generally results in relatively low methane yields of 50-60% of the theoretical maximum. Increased methane recovery from organic waste would lead to reduced handling of digested solilds, lower methane emissions to the environment, and higher green energy....... Measured methane yields for raw yard waste, wet oxidized yard waste, raw food waste, and wet oxidized food waste were 345, 685, 536, and 571 mL of CH4/g of volatile suspended solids, respectively. Higher oxygen pressure during wet oxidation of digested biowaste considerably increased the total methane...... profits. The objective of this research was to enhance the anaerobic biodegradability and methane yields from different biowastes (food waste, yard waste, and digested biowaste already treated in a full-scale biogas plant (DRANCO, Belgium)) by assessing thermal wet oxidation. The biodegradability of the...

  5. Recreates of steers on pastures with and without supplementation proteineous / energetics in the waters: intake, digestibility of nutrients and performance

    Daniel Lucas Santos Dias; Robério Rodrigues Silva; Fabiano Fereira da Silva; Gleidson Giordano Pinto de Carvalho; Rita Kelly Couto Brandão; Anderson Luiz Nascimento da Silva; Daniele Soares Barroso; Túlio Otávio Jardim D'Almeida Lins; Fabricio Bacelar Lima Mendes

    2015-01-01

    The objective of this study was to evaluate the supply of supplement of protein and supplement mineral in the rearing of crossbred steers Holstein x Zebu ½ maintained on Brachiaria brizantha. Marandu, in the rainy season and its implications on intake, nutrient digestibility and animal performance. Were used 22 steers averaging seven months of age and mean initial body weight of 164.09 ± 12.13 kg, distributed in a completely randomized design with two types of supplement and eleven repetition...

  6. The Development of Digestion and Absorption and the Energy Protein Lipid and Carbohydrate Requirements of the Premature Infants

    Aydın, Ahmet; Çam, Halit; Fıçıcıoğlu, Can; Mıkla, Şerare

    1994-01-01

    Premature infants have high energy and nutrient requirements for their rapid growth The knowledge of the development of salivary gastric biliary and intestinal enzymes and factors involved in digestion and absorption plays important roles in the choice of the feeding constituents In this review we shall discuss the protein lipid and carbohydrate requirements of the premature infants and the importance of breast feeding Key words: Premature Infant Nutriton Gastrointestinal Functions

  7. Protein cleavage strategies for an improved analysis of the membrane proteome

    Poetsch Ansgar

    2006-03-01

    Full Text Available Abstract Background Membrane proteins still remain elusive in proteomic studies. This is in part due to the distribution of the amino acids lysine and arginine, which are less frequent in integral membrane proteins and almost absent in transmembrane helices. As these amino acids are cleavage targets for the commonly used protease trypsin, alternative cleavage conditions, which should improve membrane protein analysis, were tested by in silico digestion for the three organisms Saccharomyces cerevisiae, Halobacterium sp. NRC-1, and Corynebacterium glutamicum as hallmarks for eukaryotes, archea and eubacteria. Results For the membrane proteomes from all three analyzed organisms, we identified cleavage conditions that achieve better sequence and proteome coverage than trypsin. Greater improvement was obtained for bacteria than for yeast, which was attributed to differences in protein size and GRAVY. It was demonstrated for bacteriorhodopsin that the in silico predictions agree well with the experimental observations. Conclusion For all three examined organisms, it was found that a combination of chymotrypsin and staphylococcal peptidase I gave significantly better results than trypsin. As some of the improved cleavage conditions are not more elaborate than trypsin digestion and have been proven useful in practice, we suppose that the cleavage at both hydrophilic and hydrophobic amino acids should facilitate in general the analysis of membrane proteins for all organisms.

  8. Chemical Composition, Starch Digestibility and Antioxidant Capacity of Tortilla Made with a Blend of Quality Protein Maize and Black Bean

    Luis A. Bello-Pérez

    2011-12-01

    Full Text Available Tortilla and beans are the basic components in the diet of people in the urban and rural areas of Mexico. Quality protein maize is suggested for tortilla preparation because it presents an increase in lysine and tryptophan levels. Beans contain important amounts of dietary fiber. The objective of this study was to prepare tortilla with bean and assesses the chemical composition, starch digestibility and antioxidant capacity using a quality protein maize variety. Tortilla with bean had higher protein, ash, dietary fiber and resistant starch content, and lower digestible starch than control tortilla. The hydrolysis rate (60 to 50% and the predicted glycemic index (88 to 80 of tortilla decreased with the addition of bean in the blend. Extractable polyphenols and proanthocyanidins were higher in the tortilla with bean than control tortilla. This pattern produced higher antioxidant capacity of tortilla with bean (17.6 μmol Trolox eq/g than control tortilla (7.8 μmol Trolox eq/g. The addition of bean to tortilla modified the starch digestibility and antioxidant characteristics of tortilla, obtaining a product with nutraceutical characteristics.

  9. Chemical composition, starch digestibility and antioxidant capacity of tortilla made with a blend of quality protein maize and black bean.

    Grajales-García, Eva M; Osorio-Díaz, Perla; Goñi, Isabel; Hervert-Hernández, Deisy; Guzmán-Maldonado, Salvador H; Bello-Pérez, Luis A

    2012-01-01

    Tortilla and beans are the basic components in the diet of people in the urban and rural areas of Mexico. Quality protein maize is suggested for tortilla preparation because it presents an increase in lysine and tryptophan levels. Beans contain important amounts of dietary fiber. The objective of this study was to prepare tortilla with bean and assesses the chemical composition, starch digestibility and antioxidant capacity using a quality protein maize variety. Tortilla with bean had higher protein, ash, dietary fiber and resistant starch content, and lower digestible starch than control tortilla. The hydrolysis rate (60 to 50%) and the predicted glycemic index (88 to 80) of tortilla decreased with the addition of bean in the blend. Extractable polyphenols and proanthocyanidins were higher in the tortilla with bean than control tortilla. This pattern produced higher antioxidant capacity of tortilla with bean (17.6 μmol Trolox eq/g) than control tortilla (7.8 μmol Trolox eq/g). The addition of bean to tortilla modified the starch digestibility and antioxidant characteristics of tortilla, obtaining a product with nutraceutical characteristics. PMID:22312252

  10. Ruminal, Intestinal, and Total Digestibilities of Nutrients in Cows Fed Diets High in Fat and Undegradable Protein

    Palmquist, D.L.; Weisbjerg, Martin Riis; Hvelplund, Torben

    1993-01-01

    To study relationships of high undegradable intake protein and dietary fat on intestinal AA supply, the ruminal, intestinal, and total digestibilities of diets with or without added fat (5% of DM) and animal protein (blood meal: hydrolyzed feather meal, 1:1; 8% of DM) were examined with four cows...... in a 2×2 factorial design in a 4×4 Latin square experiment. Ruminal degradabilities were 14.9 and 18.6%, and intestinal digestibilities were 98.9 and 68.3%, respectively, for CP in blood meal and feather meal. Treatment effects on ruminal digestibilities were small. Protein supplementation increased...... total N intake by 29%, duodenal AA N flow by 39%, and AA N absorbed by 37%; absorption of Leu and Lys increased 60 and 33%, and absorption of ne and Met increased 11 and 7%, respectively. Measured duodenal AA N flow (Cr2O3 marker) was 33% higher in cows cannulated adjacent to the pylorus compared with...

  11. Thermostable trypsin conjugates immobilized to biogenic magnetite show a high operational stability and remarkable reusability for protein digestion

    In this work, magnetosomes produced by microorganisms were chosen as a suitable magnetic carrier for covalent immobilization of thermostable trypsin conjugates with an expected applicability for efficient and rapid digestion of proteins at elevated temperatures. First, a biogenic magnetite was isolated from Magnetospirillum gryphiswaldense and its free surface was coated with the natural polysaccharide chitosan containing free amino and hydroxy groups. Prior to covalent immobilization, bovine trypsin was modified by conjugating with α-, β- and γ-cyclodextrin. Modified trypsin was bound to the magnetic carriers via amino groups using 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide and N-hydroxysulfosuccinimide as coupling reagents. The magnetic biomaterial was characterized by magnetometric analysis and electron microscopy. With regard to their biochemical properties, the immobilized trypsin conjugates showed an increased resistance to elevated temperatures, eliminated autolysis, had an unchanged pH optimum and a significant storage stability and reusability. Considering these parameters, the presented enzymatic system exhibits properties that are superior to those of trypsin forms obtained by other frequently used approaches. The proteolytic performance was demonstrated during in-solution digestion of model proteins (horseradish peroxidase, bovine serum albumin and hen egg white lysozyme) followed by mass spectrometry. It is shown that both magnetic immobilization and chemical modification enhance the characteristics of trypsin making it a promising tool for protein digestion. (paper)

  12. Thermostable trypsin conjugates immobilized to biogenic magnetite show a high operational stability and remarkable reusability for protein digestion

    Pečová, M.; Šebela, M.; Marková, Z.; Poláková, K.; Čuda, J.; Šafářová, K.; Zbořil, R.

    2013-03-01

    In this work, magnetosomes produced by microorganisms were chosen as a suitable magnetic carrier for covalent immobilization of thermostable trypsin conjugates with an expected applicability for efficient and rapid digestion of proteins at elevated temperatures. First, a biogenic magnetite was isolated from Magnetospirillum gryphiswaldense and its free surface was coated with the natural polysaccharide chitosan containing free amino and hydroxy groups. Prior to covalent immobilization, bovine trypsin was modified by conjugating with α-, β- and γ-cyclodextrin. Modified trypsin was bound to the magnetic carriers via amino groups using 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide and N-hydroxysulfosuccinimide as coupling reagents. The magnetic biomaterial was characterized by magnetometric analysis and electron microscopy. With regard to their biochemical properties, the immobilized trypsin conjugates showed an increased resistance to elevated temperatures, eliminated autolysis, had an unchanged pH optimum and a significant storage stability and reusability. Considering these parameters, the presented enzymatic system exhibits properties that are superior to those of trypsin forms obtained by other frequently used approaches. The proteolytic performance was demonstrated during in-solution digestion of model proteins (horseradish peroxidase, bovine serum albumin and hen egg white lysozyme) followed by mass spectrometry. It is shown that both magnetic immobilization and chemical modification enhance the characteristics of trypsin making it a promising tool for protein digestion.

  13. Hydrocolloids Decrease the Digestibility of Corn Starch, Soy Protein, and Skim Milk and the Antioxidant Capacity of Grape Juice.

    Yi, Yue; Jeon, Hyeong-Ju; Yoon, Sun; Lee, Seung-Min

    2015-12-01

    Hydrocolloids have many applications in foods including their use in dysphagia diets. We aimed to evaluate whether hydrocolloids in foods affect the digestibility of starch and protein, and their effects on antioxidant capacity. The thickening hydrocolloids: locust bean gum and carboxymethyl cellulose, and the gel-forming agents: agar agar, konjac-glucomannan, and Hot & Soft Plus were blended with corn starch and soy protein, skim milk, or grape juice and were examined for their in vitro-digestability by comparing the reducing sugar and trichloroacetic acid (TCA)-soluble peptide, for antioxidant capacity by total polyphenol contents and the 2,2-diphenyl-1-picrylhydrazyl radical scavenging activity. The hydrocolloids resulted in a decrease in starch digestibility with the gel-forming agents. Hydrocolloids diminished TCA-soluble peptides in skim milk compared to soy protein with the exception of locust bean gum and decreased free radical scavenging capacities and total phenolic contents in grape juice. Our findings may provide evidence for the use of hydro-colloids for people at risk of nutritional deficiencies such as dysphagia patients. PMID:26770915

  14. Crude protein levels in diets containing pelleted concentrate for lactating goats: intake, digestibility, milk production and composition

    Edileusa de Jesus dos Santos

    2015-08-01

    Full Text Available This study aimed to evaluate the effects of crude protein (100, 130, 160 and 190 g kg-1 of dry matter of diets composed of 200 g kg-1 of Tifton 85 grass hay and 800 g kg-1 of pelleted concentrate on intake, nutrient digestibility, production and composition of milk in lactating goats. Eight female Saanen goats with 42.7 ± 1.43 kg and 57.7 ± 7.37 days of lactation and milk production of 2 ± 0.22 kg at the beginning of the experiment were housed in individual 1.32 × 3.10 m stalls and distributed into two 4 × 4-balanced Latin squares. Intake of dry matter, organic matter, crude protein, neutral detergent fiber corrected for ash and protein, ether extract and total digestible nutrients showed a quadratic effect, with maximum intake of 2.030; 2.000; 305; 769; 55 and 1.574 g day-1 at the levels of 140.7; 140.8; 189.2; 140.9; 144.9 e 142.7 g kg-1 DM, respectively. Digestibility of dry matter, organic matter, crude protein, non-fibrous carbohydrates, ether extract and total digestible nutrient level varied linearly, with increases estimated at 0.54; 0.50, 2.02, 0.49, 0.80 and 0.63 g/100g for each percentage unit of protein added to the diet, respectively. Milk production was affected, with increase of 0.54 g for each 1% crude protein added to the diet. Milk lactose level decreased linearly, unlike the fat level, which increased linearly. Protein level showed a quadratic behavior, with a maximum of 36.7 g per kg of milk at the level of 160.5 g per kg of DM. It is recommended to use crude protein between 135 g and 150 g per kg of dry matter of diets consisting of 800 g of pelleted concentrate (composed of soybean meal replacing the alfalfa hay as protein source per kg of DM for lactating goats producing 2 kg of milk per day.

  15. Maize silage supplementation to lower quality grass silage improves the intake, apparent digestibility and N retention in wether sheep

    Ivana Matić

    2009-12-01

    Full Text Available The objective of this experiment was to study the effects of interactions between lower quality grass silage (GS dominated by orchardgrass (Dactylis glomerata L. and maize silage (MS (Zea mays L. on ad libitum intake, digestibility and N retention in wether sheep. The study consisted of four feeding treatments involving GS and MS alone, and GS and MS mixtures in ratios of 67:33 or 33:67 (DM basis fed twice daily. The GS was harvested at the beginning of flowering of orchardgrass (about 35 % of plants were in flower while the MS used was of lower DM and starch concentration (264 g kg-1 fresh weight and 211 g kg-1 DM respectively. Mean DM content of GS was 408 g kg-1 fresh weight. MS was lower in crude protein (CP (62 g kg-1 DM than the GS (98 g kg-1 DM (P<0.001. GS contained larger quantities of neutral detergent fibre (NDF and acid detergent fiber (ADF (P<0.001 than MS. Inclusion of MS in the diet (33 % vs. 67 % had positive linear effects on fresh matter (FM voluntary intake (P<0.05, digestibility of DM, organic matter (OM, digestible OM in the DM (D-value (P<0.05, starch digestibility (P<0.05, N intake (P<0.01, N output in faeces (P<0.05 and absorbed N (P<0.05. A positive associative effect of GS and MS was observed for all intake parameters measured (FM, DM, OM, NDF (quadratic, P<0.05 to P<0.01, digestibility of DM, ADF (quadratic, P<0.05, CP (quadratic, P<0.01, N intake and absorbed N (quadratic, P<0.01. It was concluded that positive interactions of GS and MS were recorded for a limited number of parameters because of the lower quality MS than required for the full benefit of two forages fed together.

  16. Comparison of liquid hot water and alkaline pretreatments of giant reed for improved enzymatic digestibility and biogas energy production.

    Jiang, Danping; Ge, Xumeng; Zhang, Quanguo; Li, Yebo

    2016-09-01

    Liquid hot water (LHW) and alkaline pretreatments of giant reed biomass were compared in terms of digestibility, methane production, and cost-benefit efficiency for electricity generation via anaerobic digestion with a combined heat and power system. Compared to LHW pretreatment, alkaline pretreatment retained more of the dry matter in giant reed biomass solids due to less severe conditions. Under their optimal conditions, LHW pretreatment (190°C, 15min) and alkaline pretreatment (20g/L of NaOH, 24h) improved glucose yield from giant reed by more than 2-fold, while only the alkaline pretreatment significantly (pelectrical energy production due to high energy input. Alkaline pretreatment achieved 27% higher net electrical energy production than that of non-pretreatment (3859kJ/kg initial total solids), but alkaline liquor reuse is needed for improved net benefit. PMID:27233098

  17. Digestive tract

    Scintiscanning of salivary glands with (sup 99m)Tc is commented. The uses of triolein - and oleic acid labelled with 131I, 125I or 82Br are discussed in the study of fat absorption, as well as 14C and 191Y. The use of 57Co as a radiotracer in the intestinal absorption of vitamin B12 is analysed. Orientation is given about 51Cr - albumin clearance in the study of plasmatic protein loss by digestive tract. The radiotracers 131I, 125I and 51Cr are pointed out in the investigation of immunoglobulins. Consideration is given to the quantification of digestive bleedings by the use of 51Cr

  18. Effect of plants containing secondary compounds with palm oil on feed intake, digestibility, microbial protein synthesis and microbial population in dairy cows.

    Anantasook, N; Wanapat, M; Cherdthong, A; Gunun, P

    2013-06-01

    The objective of this study was to determine the effect of rain tree pod meal with palm oil supplementation on feed intake, digestibility, microbial protein synthesis and microbial populations in dairy cows. Four, multiparous early-lactation Holstein-Friesian crossbred (75%) lactating dairy cows with an initial body weight (BW) of 405±40 kg and 36±8 DIM were randomly assigned to receive dietary treatments according to a 4×4 Latin square design. The four dietary treatments were un-supplementation (control), supplementation with rain tree pod meal (RPM) at 60 g/kg, supplementation with palm oil (PO) at 20 g/kg, and supplementation with RPM at 60 g/kg and PO at 20 g/kg (RPO), of total dry matter intake. The cows were offered concentrates, at a ratio of concentrate to milk production of 1:2, and chopped 30 g/kg of urea treated rice straw was fed ad libitum. The RPM contained condensed tannins and crude saponins at 88 and 141 g/kg of DM, respectively. It was found that supplementation with RPM and/or PO to dairy cows diets did not show negative effects on feed intake and ruminal pH and BUN at any times of sampling (p>0.05). However, RPM supplementation resulted in lower crude protein digestibility, NH3-N concentration and number of proteolytic bacteria. It resulted in greater allantoin absorption and microbial crude protein (p<0.05). In addition, dairy cows showed a higher efficiency of microbial N supply (EMNS) in both RPM and RPO treatments. Moreover, NDF digestibility and cellulolytic bacteria numbers were highest in RPO supplementation (p<0.05) while, supplementation with RPM and/or PO decreased the protozoa population in dairy cows. Based on this study, supplementation with RPM and/or PO in diets could improve fiber digestibility, microbial protein synthesis in terms of quantity and efficiency and microbial populations in dairy cows. PMID:25049855

  19. Interactive effects of dietary protein concentration and aflatoxin B1 on performance, nutrient digestibility, and gut health in broiler chicks.

    Chen, X; Naehrer, K; Applegate, T J

    2016-06-01

    A 20-day trial was conducted to determine the impact of aflatoxin B1 (AFB1) and dietary protein concentration on performance, nutrient digestibility, and gut health in broiler chicks. The 6 dietary treatments were arranged in a 2 × 3 factorial with 3 crude protein (CP) concentrations (16, 22, and 26%) with or without 1.5 mg/kg AFB1 Each diet was fed to 6 replicate cages (6 chicks per cage) from zero to 20 d of age. Endogenous N and amino acid loss were estimated from birds fed a N-free diet with or without 1.5 mg/kg AFB1 A significant interaction between AFB1 and CP concentration was observed for growth performance, where reduction of BW gain, feed intake, gain:feed ratio, and breast muscle weight by AFB1 were most profound in birds fed the 16%-CP diet, and were completely eliminated when birds were fed the 26%-CP diet (AFB1 by CP interaction; P ≤ 0.023). Similarly, AFB1 reduced serum albumin, total protein, and globulin concentrations in birds fed 16 and 22% CP diets, but not in those fed the 26%-CP (AFB1 by CP interaction; P ≤ 0.071). Gut permeability was increased in birds fed AFB1-contamiated diets as measured by serum lactulose/rhamnose ratio (main effect; P = 0.04). Additionally, AFB1 tended to increase endogenous N loss (P = 0.09), and significantly reduced apparent ileal digestible energy and standardized ileal N and amino acid digestibility in birds fed the 16%-CP diet, while birds fed higher dietary CP were not affected (AFB1 by CP interaction; P ≤ 0.01). Further, AFB1 increased the translation initiation factor 4E-binding protein (4EBP1), claudin1, and multiple jejunal amino acid transporters expression (main effect; P ≤ 0.04). Results from this study indicate that a 1.5 mg AFB1/kg diet significantly impairs growth, major serum biochemistry measures, gut barrier, endogenous loss, and energy and amino acid digestibility. Aflatoxicosis can be augmented by low dietary CP, while higher dietary CP completely eliminated the impairment of

  20. Effects of ethanol and protein deficiency on pancreatic digestive and lysosomal enzymes.

    Apte, M V; Wilson, J. S.; Korsten, M A; McCaughan, G W; Haber, P S; Pirola, R. C.

    1995-01-01

    The pathogenesis of alcoholic pancreatitis is not fully understood. An increase in pancreatic digestive and lysosomal enzyme synthesis because of ethanol consumption could contribute to the development of pancreatic injury in alcoholics. This study aimed, firstly, to determine the effect of ethanol on the content and messenger RNA levels of pancreatic digestive enzymes and on the messenger RNA level of the lysosomal enzyme cathepsin B, and secondly, to examine the influence of concomitant pro...

  1. New technologies in proteomics: automated excision and digestion of fluorescently stained protein gel spots and identification of proteins by MALDI-QTOF mass spectrometry

    This presentation is an overview of the techniques and systems we use for large-scale proteomics in plants. This includes a variety of 2D gel electrophoresis methods, and automation of spot-cutting, in-gel digestion, nanoLC-MS/MS tandem mass spectrometry and SEQUEST based protein identification. Examples and applications of several new technologies will also be shown, including the use of a robotic spot cutter in conjunction with high sensitivity fluorescent protein staining and the identification of proteins by redundant peptide identification in a high-throughput fashion using a hybrid MALDI-Qtof mass spectrometer

  2. Investigation on the effects of dietary protein reduction with constant ratio of digestible sulfur amino acids and threonine to lysine on performance, egg quality and protein retention in two strains of laying hens

    Farhad Foroudi; Abdollah Ghasemi-Jirdehi; Saeed Khalaji; Seyed Naser Mousavi

    2013-01-01

    An experiment was conducted to determine the possibility of using various levels of crude protein (CP) by providing laying hens with constant levels of digestible sulfur amino acid, threonine and lysine to improve performance and egg quality. The experiment was conducted as a completely randomized block design in a factorial arrangement (4 × 2) with 8 replicates of 10 hens in each. Factors included 4 levels of CP (18.5%, 17.5%, 16.5% and 15.5%) and 2 strains (LSL and Hy-Line W-36) of laying h...

  3. The expression of proteins involved in digestion and detoxification are regulated in Helicoverpa armigera to cope up with chlorpyrifos insecticide.

    Dawkar, Vishal V; Chikate, Yojana R; More, Tushar H; Gupta, Vidya S; Giri, Ashok P

    2016-02-01

    Helicoverpa armigera is a key pest in many vital crops, which is mainly controlled by chemical strategies. To manage this pest is becoming challenging due to its ability and evolution of resistance against insecticides. Further, its subsequent spread on nonhost plant is remarkable in recent times. Hence, decoding resistance mechanism against phytochemicals and synthetic insecticides is a major challenge. The present work describes that the digestion, defense and immunity related enzymes are associated with chlorpyrifos resistance in H. armigera. Proteomic analysis of H. armigera gut tissue upon feeding on chlorpyrifos containing diet (CH) and artificial diet (AD) using nano-liquid chromatography-mass spectrometry identified upregulated 23-proteins in CH fed larvae. Database searches combined with gene ontology analysis revealed that the identified gut proteins engrossed in digestion, proteins crucial for immunity, adaptive responses to stress, and detoxification. Biochemical and quantitative real-time polymerase chain reaction analysis of candidate proteins indicated that insects were struggling to get nutrients and energy in presence of CH, while at the same time endeavoring to metabolize chlorpyrifos. Moreover, we proposed a potential processing pathway of chlorpyrifos in H. armigera gut by examining the metabolites using gas chromatography-mass spectrometry. H. armigera exhibit a range of intriguing behavioral, morphological adaptations and resistance to insecticides by regulating expression of proteins involved in digestion and detoxification mechanisms to cope up with chlorpyrifos. In these contexts, as gut is a rich repository of biological information; profound analysis of gut tissues can give clues of detoxification and resistance mechanism in insects. PMID:25284010

  4. Forage cactus associated with different fiber sources for lactating Sindhi cows: intake, digestibility and microbial protein production

    Carla Aparecida Soares Saraiva

    2014-10-01

    Full Text Available This experiment was carried to evaluate the effect of forage cactus with different fiber sources (elephant grass hay [EGH], corn straw [CS], hay of cassava shoots [HCS], fresh sugarcane bagasse [FSB], and hydrolyzed sugarcane bagasse [HSB] on intake, apparent digestibility and macrobiotic protein production of cows. Five cows with 265 kg average body weight, 4.95 kg average daily milk yield and 5.22 kg 4% fat-corrected milk yield were randomly allocated to a 5 × 5 Latin square design. The animals fed cactus associated with CS, EGH and HCS showed higher intake of DM and nutrients. However, regarding the digestibility, diets with sugarcane bagasse showed higher digestibility compared with those with CS and hay. For microbial protein, the excretion of purine derivatives, synthesis of microbial N and microbial protein production were higher in the treatment with CS than in the treatment with sugarcane bagasse. On the other hand, the treatment with EGH and HCS did not have statistical differences compared with the other cases. The mean efficiency of microbial protein synthesis of the experiment was 131 g microbial crude protein/kg of TDN. The treatment with CS showed better efficiency; however, it was statistically superior only compared with FSB. The other treatments did not show statistical difference compared with the other cases. Diets with cactus associated with corn straw, hay of elephant grass or hay of cassava shoots provide higher intake of dry matter and nutrients and better metabolic response compared with diets with cactus associated with sugarcane bagasse for lactating Sindhi cows.

  5. Strategies in protein sequencing and characterization: Multi-enzyme digestion coupled with alternate CID/ETD tandem mass spectrometry

    Highlights: • Multi-enzyme digestion for protein sequencing and characterization by CID/ETD. • Simultaneous use of trypsin/chymotrypsin for the maximization of sequence. • Identification of PTMs, sequence variants and species-specific residues. • Increase of accuracy in sequence assignments by orthogonal fragmentation techniques. - Abstract: A strategy based on a simultaneous multi-enzyme digestion coupled with electron transfer dissociation (ETD) and collision-induced dissociation (CID) was developed for protein sequencing and characterization, as a valid alternative platform in ion-trap based proteomics. The effect of different proteolytic procedures using chymotrypsin, trypsin, a combination of both, and Lys-C, was carefully evaluated in terms of number of identified peptides, protein coverage, and score distribution. A systematic comparison between CID and ETD is shown for the analysis of peptides originating from the in-solution digestion of standard caseins. The best results were achieved with a trypsin/chymotrypsin mix combined with CID and ETD operating in alternating mode. A post-database search validation of MS/MS dataset was performed, then, the matched peptides were cross checked by the evaluation of ion scores, rank, number of experimental product ions, and their relative abundances in the MS/MS spectrum. By integrated CID/ETD experiments, high quality-spectra have been obtained, thus allowing a confirmation of spectral information and an increase of accuracy in peptide sequence assignments. Overlapping peptides, produced throughout the proteins, reduce the ambiguity in mapping modifications between natural variants and animal species, and allow the characterization of post translational modifications. The advantages of using the enzymatic mix trypsin/chymotrypsin were confirmed by the nanoLC and CID/ETD tandem mass spectrometry of goat milk proteins, previously separated by two-dimensional gel electrophoresis

  6. Strategies in protein sequencing and characterization: Multi-enzyme digestion coupled with alternate CID/ETD tandem mass spectrometry

    Nardiello, Donatella; Palermo, Carmen, E-mail: carmen.palermo@unifg.it; Natale, Anna; Quinto, Maurizio; Centonze, Diego

    2015-01-07

    Highlights: • Multi-enzyme digestion for protein sequencing and characterization by CID/ETD. • Simultaneous use of trypsin/chymotrypsin for the maximization of sequence. • Identification of PTMs, sequence variants and species-specific residues. • Increase of accuracy in sequence assignments by orthogonal fragmentation techniques. - Abstract: A strategy based on a simultaneous multi-enzyme digestion coupled with electron transfer dissociation (ETD) and collision-induced dissociation (CID) was developed for protein sequencing and characterization, as a valid alternative platform in ion-trap based proteomics. The effect of different proteolytic procedures using chymotrypsin, trypsin, a combination of both, and Lys-C, was carefully evaluated in terms of number of identified peptides, protein coverage, and score distribution. A systematic comparison between CID and ETD is shown for the analysis of peptides originating from the in-solution digestion of standard caseins. The best results were achieved with a trypsin/chymotrypsin mix combined with CID and ETD operating in alternating mode. A post-database search validation of MS/MS dataset was performed, then, the matched peptides were cross checked by the evaluation of ion scores, rank, number of experimental product ions, and their relative abundances in the MS/MS spectrum. By integrated CID/ETD experiments, high quality-spectra have been obtained, thus allowing a confirmation of spectral information and an increase of accuracy in peptide sequence assignments. Overlapping peptides, produced throughout the proteins, reduce the ambiguity in mapping modifications between natural variants and animal species, and allow the characterization of post translational modifications. The advantages of using the enzymatic mix trypsin/chymotrypsin were confirmed by the nanoLC and CID/ETD tandem mass spectrometry of goat milk proteins, previously separated by two-dimensional gel electrophoresis.

  7. Measurement of the Intestinal Digestibility of Rumen Undegraded Protein Using Different Methods and Correlation Analysis.

    Wang, Y; Zhang, Y G; Liu, Xiaolan; Kopparapu, N K; Xin, Hangshu; Liu, J; Guo, Jianhua

    2015-10-01

    Four methods were adopted, including the mobile nylon bag (MNB) method, modified three-step in vitro (MTS) method, original three-step in vitro (OTS) method, and acid detergent insoluble nitrogen (ADIN) estimating method, to evaluate the intestinal digestibility of rumen undegradable protein (DRUP) of 10 types of concentrates and 7 types of roughages. After correlation analysis to determine the DRUP values using the MNB, MTS, OTS, and ADIN methods, the study aimed to find out appropriate methods to replace the MNB method due to its disadvantages such as high price, long time period, and use of a duodenal T-fistula. Three dairy cows with a permanent ruminal fistula and duodenal T-fistula were used in a single-factor experimental design. The results showed that the determined DRUP values using the MNB method for soybean meal, cottonseed meal, rapeseed meal, sunflower meal, corn germ meal, corn, rice bran, barley, wheat bran, corn fiber feed, Alfalfa (Zhao dong), Alfalfa (Long mu 801), Alfalfa (Long mu 803), grass (North), Grass (Inner Mongolia), corn silage and corn straw were 98.13%, 87.37%, 88.47%, 82.60%, 75.40%, 93.23%, 69.27%, 91.27%, 72.37%, 79.03%, 66.72%, 68.64%, 73.57%, 50.47%, 51.52%, 54.05%, and 43.84%, respectively. The coefficient of determination (R (2) = 0.964) of the results between the MTS method and the MNB method was higher than that (R (2) = 0.942) between the OTS method and the MNB method. The coefficient of determination of the DRUP values of the concentrates among the in vitro method (including the MTS and OTS methods) and the MNB method was higher than that of the roughage. There was a weak correlation between the determined DRUP values in concentrates obtained from the ADIN method and those from the MNB method, and there was a significant correlation (pprotein; SP, soluble protein; NDF, neutral detergent fiber; EE, ether extract). It was concluded that both the MTS method and the OTS may suitable to replace the MNB method for determining the

  8. Effect of supplementation of lysine and methionine on growth performance, nutrients digestibility and serum biochemical indices for growing sika deer (Cervus Nippon fed protein deficient diet

    Jian Huang

    2015-02-01

    Full Text Available This study was conducted to investigate the effect of supplementation of lysine (Lys and methionine (Met on growth performance, nutrients digestibility and serum biochemical indices for growing sika deer fed crude protein (CP deficient diet. Sixteen 5-month-old growing male sika deer were randomly assigned to 4 groups receiving diets (n=4: i CP-adequate (16.63% diet; ii CP-deficient (13.77% diet with 3 g/kg Lys; iii CP-deficient with 3 g/kg Lys and 1 g/kg Met; iv CP-deficient diet with 3 g/kg Lys and 2 g/kg Met. The digestibility of dry matter P<0.01, organic matter (P<0.01, CP (P<0.01, serum albumin (P<0.01, and total protein (P<0.01 concentrations of groups receiving CP-adequate or Met supplementation were improved. The average daily gain (P=0.10, gain to feed ratio (P=0.07, the digestibility of acid (P=0.07 and neutral detergent fibre (P=0.09, and the serum globulin (P=0.08 concentrations had a tendency to increase as the Met or CP level increased. Meanwhile, blood urea nitrogen (P<0.01 and alanine aminotransferase (P<0.01 were decreased for CP-deficient, but no response to Met-added diets; aspartate aminotransferase (P=0.04 depressed for both CP-deficient and Met-added diets. Therefore, amino acids added to CP-deficient diets show high efficiency: they remain among the simplest ways for growth performance, while cutting down environmental waste and economic consumption.

  9. The effect of dietary protein on reproduction in the mare. I. The composition and evaluation of the digestibility of dietary protein from different sources

    F.E. Van Niekerk

    1997-07-01

    Full Text Available Four rations that differed in their crude protein and essential amino-acid content were compiled. Digestibility of the crude protein and essential amino-acid contents were determined biologically in a feeding trial using 4 Anglo-Arab stallions. Their respective daily diets were: Diet 1: 2 kg cubes, 5 kg tef hay (Eragrostis tef; Diet 2: 2 kg cubes, 5 kg lucerne hay (Medicago sativa; Diet 3: 2 kg cubes, 5 kg tef hay, 200 g fishmeal; Diet 4: 2 kg cubes, 5 kg lucerne hay, 200 g fishmeal. The concentrations of the amino-acids threonine, iso-leucine, leucine and arginine were increased in the total ration when lucerne hay replaced the tef hay while fishmeal supplementation increased the methionine and lysine contents, which provided a wide range of concentrations of digestible amino-acids in each of the 4 rations.

  10. Improved method for trypsin digestion of Paraplast sections before immunofluorescence staining.

    Rowse-Eagle, D; Watson, H D; Tignor, G H

    1981-01-01

    Formalin-fixed, Paraplast-embedded tissue sections mounted on subbed slides were digested with crude trypsin in modified Sorensen phosphate buffer containing sodium fluoride before immunofluorescence staining. This method prevented detachment of sections from slides during processing, thereby permitting immunofluorescence and histological examinations of adjacent serial sections.

  11. Improvement of the protein quality of corn with soybean protein.

    Bressani, R; Elías, L G; Braham, J E

    1978-01-01

    In most Central American countries, lime-treated corn provides 31% of the total protein and 45% of the energy intake, and beans 24% of the protein and 12% of the calories. Such diet is low in protein quality and quantity, as well as in energy. To overcome these deficiencies, corn can be supplemented either with its limiting amino acids, lysine and tryptophan, or better still, with whole soybeans which improve not only the amount and quality of the protein consumed but, because of their high oil content, the energy intake as well. In addition, animal experiments have shown that for maximum utilization of these nutrients, adequate vitamin and mineral intake is indispensable. At a level of 15 parts of whole soybean or 8 parts soybean-derived products, to 85--92 parts of corn there were no significant changes in the rheological or organoleptic characteristics of the tortilla prepared there of. Higher levels of soybean products, however, may affect the consistency of the lime-treated corn dough and, therefore, the tortilla acceptability. Since corn is usually cooked, but not ground, at home, the soybean supplement can be successfully added at the wet--milling stage of dough preparation or whole soybeans and corn may be cooked together, when a nutritional intervention is desired at the village level. At an industrial scale, if whole soybeans are used, they may be cooked together with corn, and if soy flour is used, this can be mixed at the end of the process when the cooked corn is ground to a flour. A flow diagram for supplementing corn with 15% whole soybeans is presented. If interventions of this nature are to be successful, there is need for increasing the prestige of corn-based food, as well as of nutrition education programs in these populations. PMID:569424

  12. Digestion of high rate activated sludge coupled to biochar formation for soil improvement in the tropics.

    Nansubuga, Irene; Banadda, Noble; Ronsse, Frederik; Verstraete, Willy; Rabaey, Korneel

    2015-09-15

    High rate activated sludge (HRAS) is well-biodegradable sludge enabling energy neutrality of wastewater treatment plants via anaerobic digestion. However, even through successful digestion a notable residue still remains. Here we investigated whether this residue can be converted to biochar, for its use as a fertilizer or as a solid fuel, and assessed its characteristics and overall process efficiency. In a first phase, HRAS was anaerobicaly digested under mesophilic conditions at a sludge retention time of 20 days. HRAS digested well (57.9 ± 6.2% VS degradation) producing on average 0.23 ± 0.04 L CH4 per gram VS fed. The digestate particulates were partially air-dried to mimic conditions used in developing countries, and subsequently converted to biochar by fixed-bed slow pyrolysis at a residence time of 15 min and at highest heating temperatures (HHT) of 300 °C, 400 °C and 600 °C. Subsequently, the produced chars were characterized by proximate analysis, CHN-elemental analysis, pH in solution and bomb calorimetry for higher heating value. The yield and volatile matter decreased with increasing HHT while ash content and fixed carbon increased with increasing HHT. The produced biochar showed properties optimal towards soil amendment when produced at a temperature of 600 °C with values of 5.91 wt%, 23.75 wt%, 70.35% on dry basis (db) and 0.44 for volatile matter, fixed carbon, ash content and H/C ratio, respectively. With regard to its use for energy purposes, the biochar represented a lower calorific value than the dried HRAS digestate likely due to high ash content. Based on these findings, it can be concluded that anaerobic digestion of HRAS and its subsequent biochar formation at HHT of 600 °C represents an attractive route for sludge management in tropic settings like in Uganda, coupling carbon capture to energy generation, carbon sequestration and nutrient recovery. PMID:26072019

  13. Effects of different sources of protein on digestive characteristics, microbial efficiency, and nutrient flow in dairy goats

    Nivea Regina de Oliveira Felisberto

    2011-10-01

    Full Text Available Diets formulated with protein sources presenting different resistance to ruminal degradation were compared by evaluating ruminal parameters, production and microbial efficiency and nutrients flow to the omasum in goats. Eight rumen cannulated non-lactating, non-pregnant goats were distributed in a 4 × 4 Latin square design with two replicates. Treatments consisted of four diets where different sources of plant protein accounted for the major protein source named soybean meal, source of higher ruminal degradability, and three other sources of higher resistance of degradation: roasted soybean, corn gluten meal, and cottonseed cake. Amounts of rumen protein were similar among rations; however, flows of dry matter, protein and non-fiber carbohydrate to omasum were higher for diets with protein source with reduced rumen degradation rate. Higher values of rumen ammonia were obtained by using ration with soybean meal as major source of protein. Higher values of pH were obtained for rations with roasted soybean e cottonseed cake. Regarding kinetic of transit, similar values were found among rations. Diets with protein sources presenting reduced ruminal degradation increase nutrients flow to the omasum in goats and alter digestive parameters such as pH and ammonia without compromising bacteria growth and efficiency, which grants their use for dairy goats with similar efficiency to rations using more degradable sources of protein.

  14. The anaerobic co-digestion of sheep bedding and ⩾ 50% cattle manure increases biogas production and improves biofertilizer quality.

    Cestonaro, Taiana; Costa, Mônica Sarolli Silva de Mendonça; Costa, Luiz Antônio de Mendonça; Rozatti, Marcos Antonio Teofilo; Pereira, Dercio Ceri; Lorin, Higor Eisten Francisconi; Carneiro, Leocir José

    2015-12-01

    Sheep manure pellets are peculiarly shaped as small 'capsules' of limited permeability and thus are difficult to degrade. Fragmentation of manure pellets into a homogeneous mass is important for decomposition by microorganisms, and occurs naturally by physical shearing due to animal trampling, when sheep bedding is used. However, the high lignocellulose content of sheep bedding may limit decomposition of sheep manure. Here, we evaluated if co-digestion of sheep bedding with cattle manure would improve the yield and quality of the useful products of anaerobic digestion of sheep bedding--biogas and biofertilizer--by providing a source of nutrients and readily available carbon. Mixtures of sheep bedding and cattle manure in varying proportions (0%, 25%, 50%, 75%, or 100% cattle manure) were added to 6-L digesters, used in a batch system, and analyzed by uni and multivariate statistical tools. PC1, which explained 64.96% of data variability, can be referred to as 'organic fraction/productivity', because higher rates of organic fraction consumption (COD, cellulose and hemicellulose contents) led to higher digester productivity (biogas production, nutrient concentration, and sample stability changes). Therefore, productivity and organic fraction variables were most influenced by manure mixtures with higher (⩾ 50%) or lower (⩽ 25%) ratios of cattle manure, respectively. Increasing the amount of cattle manure up to 50% enhanced the biogas potential production from 142 L kg(-1)TS (0% of cattle manure) to 165, 171, 160 L biogas kg(-1)TS for the mixtures containing 100%, 75% and 50% of cattle manure, respectively. Our results show that the addition of ⩾ 50% cattle manure to the mixture increases biogas production and improves the quality of the final biofertilizer. PMID:26341827

  15. Milk production response to varying protein supply is independent of forage digestibility in dairy cows

    Alstrup, Lene; Weisbjerg, Martin Riis; Hymøller, Lone;

    2014-01-01

    1.7 kg/d and a higher CP concentration increased it by 1.2 kg/d. We detected no interaction between forage digestibility and CP concentration on milk production. Reduced digestibility was accompanied by an increase in the plasma level of glucose, suggesting that other nutrients were limiting to milk...... of the same concentrate per day in the automatic milking system in addition to the mixed ration. Every feeding period lasted 3 wk, and DM intake and milk yield were measured in the last week in each period, and milk samples for determining milk composition, including fatty acid content, and blood...

  16. The effect of dietary protein on reproduction in the mare. I. The composition and evaluation of the digestibility of dietary protein from different sources

    F.E. Van Niekerk; C.H. Van Niekerk

    1997-01-01

    Four rations that differed in their crude protein and essential amino-acid content were compiled. Digestibility of the crude protein and essential amino-acid contents were determined biologically in a feeding trial using 4 Anglo-Arab stallions. Their respective daily diets were: Diet 1: 2 kg cubes, 5 kg tef hay (Eragrostis tef); Diet 2: 2 kg cubes, 5 kg lucerne hay (Medicago sativa); Diet 3: 2 kg cubes, 5 kg tef hay, 200 g fishmeal; Diet 4: 2 kg cubes, 5 kg lucerne hay, 200 g fishmeal. The co...

  17. Digestive System

    ... 5 Things to Know About Zika & Pregnancy Digestive System KidsHealth > For Parents > Digestive System Print A A ... body can absorb and use. About the Digestive System Almost all animals have a tube-type digestive ...

  18. Digestive Diseases

    ... cells and provide energy. This process is called digestion. Your digestive system is a series of hollow ... are also involved. They produce juices to help digestion. There are many types of digestive disorders. The ...

  19. Peptidomics of Peptic Digest of Selected Potato Tuber Proteins: Post-Translational Modifications and Limited Cleavage Specificity.

    C K Rajendran, Subin R; Mason, Beth; Udenigwe, Chibuike C

    2016-03-23

    Bioinformatic tools are useful in predicting bioactive peptides from food proteins. This study was focused on using bioinformatics and peptidomics to evaluate the specificity of peptide release and post-translational modifications (PTMs) in a peptic digest of potato protein isolate. Peptides in the protein hydrolysate were identified by LC-MS/MS and subsequently aligned to their parent potato tuber proteins. Five major proteins were selected for further analysis, namely, lipoxygenase, α-1,4-glucan phosphorylase, annexin, patatin, and polyubiquitin, based on protein coverage, abundance, confidence levels, and function. Comparison of the in silico peptide profile generated with ExPASy PeptideCutter and experimental peptidomics data revealed several differences. The experimental peptic cleavage sites were found to vary in number and specificity from PeptideCutter predictions. Average peptide chain length was also found to be higher than predicted with hexapeptides as the smallest detected peptides. Moreover, PTMs, particularly Met oxidation and Glu/Asp deamidation, were observed in some peptides, and these were unaccounted for during in silico analysis. PTMs can be formed during aging of potato tubers, or as a result of processing conditions during protein isolation and hydrolysis. The findings provide insights on the limitations of current bioinformatics tools for predicting bioactive peptide release from proteins, and on the existence of structural modifications that can alter the peptide bioactivity and functionality. PMID:26947758

  20. Dietary actinidin from kiwifruit (Actinidia deliciosa cv. Hayward) increases gastric digestion and the gastric emptying rate of several dietary proteins in growing rats.

    Montoya, Carlos A; Hindmarsh, Jason P; Gonzalez, Lucrecia; Boland, Mike J; Moughan, Paul J; Rutherfurd, Shane M

    2014-04-01

    Dietary actinidin influences the extent to which some dietary proteins are digested in the stomach, and it is hypothesized that the latter modulation will in turn affect their gastric emptying rate (GE). In this study, the effect of dietary actinidin on GE and gastric digestion of 6 dietary protein sources was determined in growing rats. Each dietary protein source [beef muscle, gelatin, gluten, soy protein isolate (SPI), whey protein isolate, and zein] was included in 2 semisynthetic diets as the sole nitrogen source. For each protein source, 1 of the 2 diets contained actinidin [76.5 U/g dry matter (DM)] in the form of ground freeze-dried green kiwifruit (Actinidia deliciosa cv. Hayward), whereas the other diet contained freeze-dried gold kiwifruit (Actinidia chinensis cv. Hort16A), which is devoid of actinidin (3.4 U/g DM). For both diets, dietary kiwifruit represented 20% of the diet on a DM basis. The real-time GE was determined in rats gavaged with a single dose of the diets using magnetic resonance spectroscopy over 150 min (n = 8 per diet). Gastric protein digestion was determined based on the free amino groups in the stomach chyme collected from rats fed the diets (n = 8 per diet) that were later killed. GE differed across the protein sources [e.g., the half gastric emptying time (T(½)) ranged from 157 min for gluten to 266 min for zein] (P < 0.05). Dietary actinidin increased the gastric digestion of beef muscle (0.6-fold), gluten (3.2-fold), and SPI (0.6-fold) and increased the GE of the diets containing beef muscle (43% T(½)) and zein (23% T(½); P < 0.05). There was an inverse correlation between gastric protein digestion and DM retained in the stomach (r = -0.67; P < 0.05). In conclusion, dietary actinidin increased gastric protein digestion and accelerated the GE for several dietary protein sources. GE may be influenced by gastric protein digestion, and dietary actinidin can be used to modulate GE and protein digestion in the stomach of some

  1. Recombinant immobilized rhizopuspepsin as a new tool for protein digestion in hydrogen/deuterium exchange mass spectrometry.

    Rey, Martial; Man, Petr; Brandolin, Gérard; Forest, Eric; Pelosi, Ludovic

    2009-11-01

    Hydrogen/deuterium (H/D) exchange coupled to mass spectrometry is nowadays routinely used to probe protein interactions or conformational changes. The method has many advantages, e.g. very low sample consumption, but offers limited spatial resolution. One way to higher resolution leads through the use of different proteases or their combinations. In the present work we describe recombinant production, purification and use of aspartic protease zymogen from Rhizopus chimensis, protease type XVIII (EC 3.4.23.6), commonly referred to as rhizopuspepsinogen (Rpg). The enzyme was expressed in Escherichia coli, refolded and purified to homogeneity. A typical yield was approximately 100 mg of pure enzyme per 1 L of original bacterial culture. The kinetics of protease activation, i.e. removal of the propeptide achieved by autolysis in an acidic environment, was followed by mass spectrometry. The digestion efficiency was tested for the protease in solution as well as for the immobilized enzyme. Apomyoglobin was successfully digested under all conditions tested and the protease displayed very low or no autodigestion. The results outperformed those obtained with commercial protease where the digestion of apomyoglobin was incomplete and accompanied by many contaminating peptides. Taken together, the recombinant protease type XVIII can be considered as a new and highly efficient tool for H/D exchange followed by mass spectrometry. PMID:19827048

  2. Papain digestion of crude Trichoderma reesei cellulase: Purification and properties of cellobiohydrolase I and II core proteins

    Woodward, J.; Brown, J.P.; Evans, B.R.; Affholter, K.A.

    1992-01-01

    Papain digestion of a crude Trichoderma reesei cellulose preparation followed by gel filtration on a Superdex column resulted in the separation of cellobiohydrolase (CBH) I and II core proteins (cp). They were further purified to apparent homogeneity by chromatofocusing. N-terminal protein sequencing of the CBH II cp preparation confirmed its identity. A comparison of the catalytic activity and cellulose-binding ability of these core proteins was made. The major differences between them were the findings that CBH II cp possessed a sixfold higher specific activity toward p-nitrophenylcellobioside than the native CBH II preparation and still bound to microcrystalline cellulose, unlike CBH I cp. Neither CBH I cp nor CBH II cp had activity toward carboxymethylcellulose, but both were able to hydrolyze barley b-glucan. These data suggest that removal of the cellulose-binding domain and hinge region from CBH I and II have different effects on their properties.

  3. Papain digestion of crude Trichoderma reesei cellulase: Purification and properties of cellobiohydrolase I and II core proteins

    Woodward, J.; Brown, J.P.; Evans, B.R.; Affholter, K.A.

    1992-12-01

    Papain digestion of a crude Trichoderma reesei cellulose preparation followed by gel filtration on a Superdex column resulted in the separation of cellobiohydrolase (CBH) I and II core proteins (cp). They were further purified to apparent homogeneity by chromatofocusing. N-terminal protein sequencing of the CBH II cp preparation confirmed its identity. A comparison of the catalytic activity and cellulose-binding ability of these core proteins was made. The major differences between them were the findings that CBH II cp possessed a sixfold higher specific activity toward p-nitrophenylcellobioside than the native CBH II preparation and still bound to microcrystalline cellulose, unlike CBH I cp. Neither CBH I cp nor CBH II cp had activity toward carboxymethylcellulose, but both were able to hydrolyze barley b-glucan. These data suggest that removal of the cellulose-binding domain and hinge region from CBH I and II have different effects on their properties.

  4. Impact of dehulling on the physico-chemical properties and in vitro protein digestion of common beans (Phaseolus vulgaris L.).

    Romano, A; Giosafatto, C V L; Masi, P; Mariniello, L

    2015-04-01

    The objective of this study was to understand the effect of dehulling on the microstructural, physico-chemical characteristics, and in vitro protein digestion of common bean flours with particular regard to differences between adults and infants. The microstructure of flour samples from undehulled (WB) and manually dehulled (SB) beans, observed through scanning electron microscopy, showed that WB starch granules appeared to be surrounded by an integral matrix, while the SB starch granule structure was still visible although covered by protein clusters. The starch granules were oval and spherical, with heterogeneous sizes ranging from 19 to 30 μm in diameter. Particle size analysis determined with a laser diffraction particle size analyzer showed similar bimodal particle size distributions of small (1-25 μm) and large (>100 μm) granules, though the particle size of WB was obviously higher than SB. Color and other physico-chemical analyses showed that dehulling had significant (P flour protein digestion which could be utilized in various food applications. PMID:25778680

  5. Eliminating methanogenic activity in hydrogen reactor to improve biogas production in a two-stage anaerobic digestion process co-digesting municipal food waste and sewage sludge.

    Zhu, Heguang; Parker, Wayne; Conidi, Daniela; Basnar, Robert; Seto, Peter

    2011-07-01

    Laboratory scale two-stage anaerobic digestion process model was operated for 280 days to investigate the feasibility to produce both hydrogen and methane from a mixture feedstock (1:1 (v/v)) of municipal food waste and sewage sludge. The maximum hydrogen and methane yields obtained in the two stages were 0.93 and 9.5 mL/mL feedstock. To eliminate methanogenic activity and obtain substantial hydrogen production in the hydrogen reactor, both feedstock and mixed liquor required treatment. The heat treatment (100°C, 10 min) for feedstock and a periodical treatment (every 2-5 weeks, either heating, removal of biomass particles or flushing with air) for mixed liquor were effective in different extent. The methane production in the second stage was significantly improved by the hydrogen production in the first stage. The maximum methane production obtained in the period of high hydrogen production was more than 2-fold of that observed in the low hydrogen production period. PMID:21592783

  6. Functional and anti-nutritional properties, in-vitro protein digestibility and amino acid composition of dehulled afzelia africana seeds

    Analysis of Afzelia africana seed flour showed that the seeds possessed high water absorption capacity (128.31%), good oil absorption capacity (588.49%) and fairly good emulsion property (35.25%). However, it had the Least gelation concentration (6 .00% w/v) and foaming properties ( 8.00%,3 .00%). Anti-nutritional factors were very low, with the highest being phytate (13.59/o) and tannin the least (0.43%). Total amino acid composition was 796.6 mg/g protein. Essentiaal amino acids (48.5%)w ere in high proportion with in-vitro digestibility of 71.5%. (author)

  7. Inaccuracy of AOAC method 2009.01 with amyloglucosidase for measuring non-digestible oligosaccharides and proposal for an improvement of the method.

    Tanabe, Kenichi; Nakamura, Sadako; Oku, Tsuneyuki

    2014-05-15

    We wished to clarify the inaccuracy of AOAC method 2009.01 for the measurement of non-digestible oligosaccharides and to propose an improved method using porcine intestinal enzymes. Amyloglucosidase used in AOAC method 2009.01 scarcely hydrolyses sucrose, palatinose and panose (which are readily digested by intestinal enzymes). Hence, oligosaccharides could not be measured accurately by AOAC method 2009.01. To confirm the inaccuracy of the method, we used porcine intestinal enzymes instead of amyloglucosidase. Using the improved method, fructooligosaccharide and galactooligosaccharide were measured accurately as non-digestible oligosaccharides, but sucrose, palatinose, panose and isomaltooligosaccharide were not. The improved method hydrolysed digestible oligosaccharides into monosaccharides. These results demonstrate that the inaccuracy of AOAC method 2009.01 for oligosaccharide measurement is due to incomplete hydrolysis by amyloglucosidase. We propose that amyloglucosidase should be replaced with porcine intestinal enzymes for such measurements. PMID:24423568

  8. Effect of limonene on anaerobic digestion of citrus waste and pretreatments for its improvement

    RUIZ FUERTES, BEGOÑA

    2015-01-01

    [EN] Anaerobic digestion is a sustainable and technically sound way to valorise citrus waste if the inhibitory effect of the citrus essential oil (CEO) is controlled. Several strategies have been proposed to overcome these difficulties: keeping the organic loading rate (OLR) in low values to avoid excess dosage of inhibitor, supplementing the citrus waste with nutrient and buffering solutions or pre-treating the citrus waste in order to reduce the CEO concentration, either by recovery or by d...

  9. Improved biogas production from rice straw by co-digestion with kitchen waste and pig manure

    Ye, Jingqing [Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China); School of Environmental Sciences and Engineering, Sun Yat-sen University, Guangzhou 510275 (China); Li, Dong; Sun, Yongming [Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China); Wang, Guohui [School of Environmental Sciences and Engineering, Sun Yat-sen University, Guangzhou 510275 (China); Yuan, Zhenhong, E-mail: yuanzh@ms.giec.ac.cn [Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China); Zhen, Feng; Wang, Yao [Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640 (China)

    2013-12-15

    Highlights: • Biogas production was enhanced by co-digestion of rice straw with other materials. • The optimal ratio of kitchen waste, pig manure and rice straw is 0.4:1.6:1. • The maximum biogas yield of 674.4 L/kg VS was obtained. • VFA inhibition occurred when kitchen waste content was more than 26%. • The dominant VFA were propionate and acetate in successful reactors. - Abstract: In order to investigate the effect of feedstock ratios in biogas production, anaerobic co-digestions of rice straw with kitchen waste and pig manure were carried out. A series of single-stage batch mesophilic (37 ± 1 °C) anaerobic digestions were performed at a substrate concentration of 54 g/L based on volatile solids (VS). The results showed that the optimal ratio of kitchen waste, pig manure, and rice straw was 0.4:1.6:1, for which the C/N ratio was 21.7. The methane content was 45.9–70.0% and rate of VS reduction was 55.8%. The biogas yield of 674.4 L/kg VS was higher than that of the digestion of rice straw or pig manure alone by 71.67% and 10.41%, respectively. Inhibition of biogas production by volatile fatty acids (VFA) occurred when the addition of kitchen waste was greater than 26%. The VFA analysis showed that, in the reactors that successfully produced biogas, the dominant intermediate metabolites were propionate and acetate, while they were lactic acid, acetate, and propionate in the others.

  10. Improved biogas production from rice straw by co-digestion with kitchen waste and pig manure

    Highlights: • Biogas production was enhanced by co-digestion of rice straw with other materials. • The optimal ratio of kitchen waste, pig manure and rice straw is 0.4:1.6:1. • The maximum biogas yield of 674.4 L/kg VS was obtained. • VFA inhibition occurred when kitchen waste content was more than 26%. • The dominant VFA were propionate and acetate in successful reactors. - Abstract: In order to investigate the effect of feedstock ratios in biogas production, anaerobic co-digestions of rice straw with kitchen waste and pig manure were carried out. A series of single-stage batch mesophilic (37 ± 1 °C) anaerobic digestions were performed at a substrate concentration of 54 g/L based on volatile solids (VS). The results showed that the optimal ratio of kitchen waste, pig manure, and rice straw was 0.4:1.6:1, for which the C/N ratio was 21.7. The methane content was 45.9–70.0% and rate of VS reduction was 55.8%. The biogas yield of 674.4 L/kg VS was higher than that of the digestion of rice straw or pig manure alone by 71.67% and 10.41%, respectively. Inhibition of biogas production by volatile fatty acids (VFA) occurred when the addition of kitchen waste was greater than 26%. The VFA analysis showed that, in the reactors that successfully produced biogas, the dominant intermediate metabolites were propionate and acetate, while they were lactic acid, acetate, and propionate in the others

  11. High-moisture air-tight storage of barley and wheat improves nutrient digestibility.

    Poulsen, H D; Blaabjerg, K; Nørgaard, J V; Ton Nu, M A

    2012-12-01

    Barley (Hordeum vulgare) and wheat (Triticum aestivum) are often stored dry with 14% or less moisture, which during rainy periods may require that grains are dried after harvest. The hypothesis is that air-tight storage of high-moisture barley and wheat will increase nutrient digestibility due to chemical conversions prior to feeding. The objective was to evaluate the effect of high moisture compared to dry storage of barley and wheat on digestibility of P and CP. The crops were grown on 1 field keeping other factors constant. Half of the grains was harvested in the morning after a rainy day and stored in air-tight silos (DM, %: barley, 85.2; wheat, 82.8) and the other half was harvested later the same day (windy and sunny) and stored dry (DM, %: barley, 89.8; wheat, 88.3). After 6 mo of storage, 1 low- and 1 high-moisture diet were prepared with a barley:wheat ratio of 1:1 mixed with soybean (Glycine max) meal and rapeseed cake to produce a compound diet without inorganic P and microbial phytase. Sixteen 45-kg pigs housed in metabolism crates were fed either the low- or the high-moisture diet for 5 d for adaptation and 7 d for total collection of feces. Digestibility of P was 12% higher (P pigs. Therefore, high-moisture air-tight storage saved energy (without drying) and at the same time enhanced P digestibility and increased the nutritional value of grain probably through enzymatic activity during storage. PMID:23365343

  12. Enzymatic digestion improves testicular sperm retrieval in non-obstructive azoospermic patients

    Tahereh Modarresi; Marjan Sabbaghian; Abdolhossein Shahverdi; Hani Hosseinifar; Ali Asghar Akhlaghi; Mohammad Ali Sadighi Gilani

    2013-01-01

    Background: In patients with non-obstructive azoospermia (NOA), vital spermatozoa from the tissue is obtained from testes by enzymatic treatment besides the mechanical treatment. Objective: To increase the sperm recovery success of testicular sperm extraction (TESE), with enzymatic digestion if no sperm is obtained from testis tissue by mechanical method. Materials and Methods: Tissue samples were collected from 150 men who presented with clinical and laboratory data indicating NOA by means o...

  13. Corn germ with pericarp in relation to whole corn: nutrient contents, food and protein efficiency, and protein digestibility-corrected amino acid score

    Maria Margareth Veloso Naves

    2011-03-01

    Full Text Available The germ fraction with pericarp (bran is generated in the industrial processing of corn kernel, and it is used for oil extraction and animal feed. This study evaluated the nutritional and protein quality of this fraction in relation to whole corn. The proximate composition, mineral contents, and amino acid profile of the germ fraction with pericarp and of whole corn were determined. A 4-week experiment was conducted using 36 weanling male Wistar rats, and three 10%-protein diets (reference, germ with 15% lipids and casein with 15% lipids, two 6%-protein diets (whole corn and casein, and a protein-free diet were prepared. The germ showed higher contents of proteins, lipids, dietary fiber (27.8 g.100 g-1, ash, minerals (Fe and Zn- approximately 5 mg.100 g-1, and lysine (57.2 mg.g-1 protein than those of corn. The germ presented good quality protein (Relative Protein Efficiency Ratio-RPER = 80%; Protein Digestibility-Corrected Amino Acid Score-PDCAAS = 86%, higher than that of corn (RPER = 49%; PDCAAS = 60%. The corn germ fraction with pericarp is rich in dietary fiber, and it is a source of good quality protein as well as of iron and zinc, and its use as nutritive raw material is indicated in food products for human consumption.

  14. Estimation of the optimal ratio of standardized ileal digestible threonine to lysine for finishing barrows fed low crude protein diets.

    Xie, Chunyuan; Zhang, Shihai; Zhang, Guijie; Zhang, Fengrui; Chu, Licui; Qiao, Shiyan

    2013-08-01

    Two experiments were conducted to determine the standardized ileal digestible (SID) lysine (Lys) requirement and the ideal SID threonine (Thr) to Lys ratio for finishing barrows. In Exp. 1, 120 barrows with an average body weight of 72.8±3.6 kg were allotted to one of six dietary treatments in a randomized complete block design conducted for 35 d. Each diet was fed to five pens of pigs containing four barrows. A normal crude protein (CP) diet providing 15.3% CP and 0.71% SID Lys and five low CP diets providing 12% CP with SID Lys concentrations of 0.51, 0.61, 0.71, 0.81 and 0.91% were formulated. Increasing the SID Lys content of the diet resulted in an increase in weight gain (linear effect p = 0.04 and quadratic effect p = 0.08) and an improvement in feed conversion ratio (FCR) (linear effect p = 0.02 and quadratic effect p = 0.02). For weight gain and FCR, the estimated SID Lys requirement of finishing barrows were 0.71 and 0.71% (linear broken-line analysis), 0.79 and 0.78% (quadratic analysis), respectively. Exp. 2 was a 26 d dose-response study using SID Thr to Lys ratios of 0.56, 0.61, 0.67, 0.72 and 0.77. A total of 138 barrows weighing 72.5±4.4 kg were randomly allotted to receive one of the five diets. All diets were formulated to contain 0.61% SID Lys (10.5% CP), which is slightly lower than the pig's requirement. Weight gain was quadratically (p = 0.03) affected by SID Thr to Lys ratio while FCR was linearly improved (p = 0.02). The SID Thr to Lys ratios for maximal weight gain and minimal FCR and serum urea nitrogen (SUN) were 0.67, 0.71 and 0.64 using a linear broken-line model and 0.68, 0.78 and 0.70 using a quadratic model, respectively. Based on the estimates obtained from the broken-line and quadratic analysis, we concluded that the dietary SID Lys requirement for both maximum weight gain and minimum FCR was 0.75%, and an optimum SID Thr to Lys ratio was 0.68 to maximize weight gain, 0.75 to optimize FCR and 0.67 to minimize SUN for finishing

  15. Hydrolysis by Alcalase Improves Hypoallergenic Properties of Goat Milk Protein

    Yun, Sung-Seob; Lee, Won-Jae; Kim, Jin-Wook; Ha, Ho-Kyung; Yoo, Michelle

    2016-01-01

    Goat milk is highly nutritious and is consumed in many countries, but the development of functional foods from goat milk has been slow compared to that for other types of milk. The aim of this study was to develop a goat milk protein hydrolysate (GMPH) with enhanced digestibility and better hypoallergenic properties in comparison with other protein sources such as ovalbumin and soy protein. Goat milk protein was digested with four commercial food-grade proteases (separately) under various conditions to achieve the best hydrolysis of αs -casein and β-lactoglobulin. It was shown that treatment with alcalase (0.4%, 60℃ for 30 min) effectively degraded these two proteins, as determined by SDS-PAGE, measurement of nonprotein nitrogen content, and reverse-phase high-performance liquid chromatography. Hydrolysis with alcalase resulted in a significant decrease in β-lactoglobulin concentration (almost to nil) and a ~40% reduction in the level of αs-casein. Quantification of histamine and TNF-α released from HMC-1 cells (human mast cell line) showed that the GMPH did not induce an allergic response when compared to the control. Hence, the GMPH may be useful for development of novel foods for infants, the elderly, and convalescent patients, to replace cow milk.

  16. Improving Biomethane Production and Mass Bioconversion of Corn Stover Anaerobic Digestion by Adding NaOH Pretreatment and Trace Elements

    ChunMei Liu; HaiRong Yuan; DeXun Zou; YanPing Liu; BaoNing Zhu; XiuJin Li

    2015-01-01

    This research applied sodium hydroxide (NaOH) pretreatment and trace elements to improve biomethane production when using corn stover for anaerobic digestion. Full-factor experimental tests identified the best combination of trace elements with the NaOH pretreatment, indicating that the best combination was with 1.0, 0.4, and 0.4 mg·L−1·d−1 of elements Fe, Co, and Ni, respectively. The cumulative biomethane production adding NaOH pretreatment and trace elements was 11,367 mL; total solid bioc...

  17. Infogest: an international network for improving health properties of food by sharing our knowledge on the digestive process

    Léonil, Joelle

    2012-01-01

    Establishing the links between food and human health was a top research priority for Europe. EU legislation, as advised by EFSA, now demands proper scientific data in nutrition and health claims. There is a lot of data being generated on the link between the food digestion and human health and a significant effort continues to be expended separately in each EU country on optimizing food for preventing the development of food-related diseases. The main objective of the COST Action “Improving...

  18. In vitro protein digestibility and physico-chemical properties of flours and protein concentrates from two varieties of lentil (Lens culinaris).

    Barbana, Chockry; Boye, Joyce Irene

    2013-02-01

    The chemical composition of whole lentil flours and lentil protein concentrates prepared by alkaline extraction and iso-electric precipitation from Blaze and Laird varieties of lentil were studied. The protein composition of the flours and concentrates, determined by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) and size-exclusion high-performance liquid chromatography (SE-HPLC) showed that the extracted proteins were composed mainly of globulins and albumins. Trypsin inhibitor activity ranged between 0.94 and 1.94 trypsin inhibitor units (TIU) mg(-1) for the flours, but was markedly lower in the protein concentrates ranging between 0.17 and 0.66 TIU mg(-1). In vitro protein digestibility ranged between 75.90 and 77.05% for the flours, whereas significantly (P flours and the concentrates from both varieties. Thermal properties of both flours as studied by differential scanning calorimetry (DSC) were comparable. However, the endothermic parameters of the two protein concentrates were significantly (P lentil protein concentrates is higher than that of the flours, however, both lentil flours and protein concentrates contain useful proteins that could serve as value-added ingredients in food formulations. PMID:23151538

  19. Improving ADM1 model to simulate anaerobic digestion start-up with inhibition phase based on cattle slurry

    The Anaerobic Digestion Model No.1 (ADM1) was improved to simulate an anaerobic digestion start-up phase. To improve the ADM1, a combined hydrolysis equation was used based on the Contois model of bacterial growth and the function of hydrolysis inhibition by VFA. The start-up with fresh cattle slurry was carried out in a pilot-scale reactor to calibrate the chosen parameters of the ADM1. The important aspects of model calibration were hydrolysis rate, the number of anaerobic microbes in cattle slurry, and the growth rate of bacteria. Good simulation results were achieved after calibration for the independent start-up test with pre-conditioned cattle slurry. - Highlights: • Improved ADM1 can be used for simulation of reactor start-up with inhibition phase. • The hydrolysis rate had a decreased value in case of high VFA concentration or low number of hydrolytic bacteria. • Hydrolysis inhibitory threshold value of 9.85 g L−1 was obtained for VFA. • Start-up with pre-conditioned cattle slurry had a relatively short inhibition phase

  20. On the digestibility and utilization of labelled protein of feeds and foods rich in dietary fibres

    Labelled straw meal as model substance and broiler hens as experimental animals, which take in 25% of ration dry matter as straw were used. Since the digestibility of high-polymeric carbohydrate is considerably increased by γ-rays in ruminants untreated and irradiated straw were included. The hens were given a ration which also contained labelled wheat and which was supplemented with straw meal in order to find the origin of the additional N excretion by the fibre. (author)

  1. Highly stable trypsin-aggregate coatings on polymer nanofibers for repeated protein digestion

    Kim, Byoung Chan; Lopez-Ferrer, Daniel; Lee, Sang-Mok; Ahn, Hye-Kyung; Nair, Sujith; Kim, Seong H; Kim, Beom Soo; Petritis, Konstantinos; Camp, David G.; Grate, Jay W.; Smith, Richard D.; Koo, Yoon-Mo; Gu, Man Bock; Kim, Jungbae

    2009-01-01

    A stable and robust trypsin-based biocatalytic system was developed and demonstrated for proteomic applications. The system utilizes polymer nanofibers coated with trypsin aggregates for immobilized protease digestions. After covalently attaching an initial layer of trypsin to the polymer nanofibers, highly concentrated trypsin molecules are crosslinked to the layered trypsin by way of a glutaraldehyde treatment. This process produced a 300-fold increase in trypsin activity compared with a co...

  2. Improving methane production from digested manure biofibers by mechanical and thermal alkaline pretreatment

    Tsapekos, Panagiotis; Kougias, Panagiotis; Frison, A.;

    2016-01-01

    , enhancing fibers degradability by more than 4-fold. In continuous experiments, the thermal alkaline pretreatment, using 6% NaOH at 55 °C was proven to be the most efficient pretreatment method as the methane production was increased by 26%. The findings demonstrated that the methane production of the biogas......Animal manure digestion is associated with limited methane production, due to the high content in fibers, which are hardly degradable lignocellulosic compounds. In this study, different mechanical and thermal alkaline pretreatment methods were applied to partially degradable fibers, separated from...

  3. Non Starch Polysaccharidase - A Potent tool in improving fibre digestibility in Ruminants

    Yancy Mary Issac

    2010-06-01

    Full Text Available Manipulation of rumen fermentation by using feed additives has been gaining popularity in ruminant nutrition in recent years. One such approach is the use of fibrolytic enzymes in the treatment of feedstuffs to enhance their digestibility. The better understanding of the production techniques, enzyme activity, mode of enzyme action and application techniques of commercial non starch polysaccharidase enzymes can help the scientific community for competent utilization of these biotechnological products for efficient utilization of the available feed resources. [Vet. World 2010; 3(3.000: 142-144

  4. Improving health properties of food by sharing our knowledge on the digestive process

    Dupont, Didier

    2013-01-01

    Descriptions are provided by the Actions directly via e-COST. The Science Policy Briefing n°36 jointly published by ESF and COST in March 2009 clearly stated that the links between food and human health was a top research priority for Europe. EU legislation, as advised by EFSA, now demands proper scientific data in nutrition and health claims. There is a lot of data being generated on the link between the food digestion and human health and a significant effort continues to be expended se...

  5. Investigation on the effects of dietary protein reduction with constant ratio of digestible sulfur amino acids and threonine to lysine on performance, egg quality and protein retention in two strains of laying hens

    Farhad Foroudi

    2013-01-01

    Full Text Available An experiment was conducted to determine the possibility of using various levels of crude protein (CP by providing laying hens with constant levels of digestible sulfur amino acid, threonine and lysine to improve performance and egg quality. The experiment was conducted as a completely randomized block design in a factorial arrangement (4 × 2 with 8 replicates of 10 hens in each. Factors included 4 levels of CP (18.5%, 17.5%, 16.5% and 15.5% and 2 strains (LSL and Hy-Line W-36 of laying hens. Hens were fed experimental diets from 25 to 33 weeks of age. Production performance was measured for eight weeks and egg quality characteristics were determined at 29 and 33 weeks of age. Protein reduction decreased egg weight, egg mass and hen body weight linearly (P≤0.01. Egg production was not affected by protein reduction but feed efficiency, and average daily feed intake increased significantly (P≤0.01. Lohmann Selected Leghorn laying hens showed significantly higher egg production, egg weight, egg mass, weight gain, feed efficiency and feed intake compared to the W-36 laying hens (P≤0.01. Shell thickness increased linearly as protein levels decreased (P≤0.05. There were significant differences between two strains on the egg quality characteristics (P≤0.01. Significant (P≤0.05 CP × strain interactions were observed for hen weight, albumen height, Haugh units, yolk and shell percentage. Based on the results of this experiment, a reduction in dietary protein level (from 18.5% to 15.5%, without any alteration in digestible TSAA and Thr: Lys ratio, led to inferior egg mass and feed conversion ratio during the peak production period.

  6. A comparative in vitro study of the digestibility of heat- and high pressure-induced gels prepared from industrial milk whey proteins

    He, Jin-Song; Mu, Tai-Hua; Wang, Juan

    2013-06-01

    We undertook this study to compare the digestibility of heat- and high pressure-induced gels produced from whey protein isolate (WPI). To simulate in vivo gastrointestinal digestion of WPI gels, a pepsin-trypsin digestion system was used. The in vitro protein digestibility of WPI gels induced by high pressure (400 MPa and 30 min; P-gel) and those induced by heat (80°C and 30 min; H-gel) was compared using a protein concentration of 0.14 g mL-1. The in vitro protein digestibility of P-gels was significantly greater than that of H-gels (p<0.05). The size-exclusion chromatography profiles of the hydrolysates showed that the P-gel generated more and smaller peptides than natural WPI and H-gels. Furthermore, Sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis showed some soluble disulfide-mediated aggregation in the P-gel, while there was more insoluble aggregation in the H-gel than the P-gel. The P-gel was more sensitive to proteinase than the H-gel, which was related to the content of S-S bonds, and this in turn could be attributed to the differences in the gelation mechanism between the H-gel and P-gel.

  7. Improving Biomethane Production and Mass Bioconversion of Corn Stover Anaerobic Digestion by Adding NaOH Pretreatment and Trace Elements

    ChunMei Liu

    2015-01-01

    Full Text Available This research applied sodium hydroxide (NaOH pretreatment and trace elements to improve biomethane production when using corn stover for anaerobic digestion. Full-factor experimental tests identified the best combination of trace elements with the NaOH pretreatment, indicating that the best combination was with 1.0, 0.4, and 0.4 mg·L−1·d−1 of elements Fe, Co, and Ni, respectively. The cumulative biomethane production adding NaOH pretreatment and trace elements was 11,367 mL; total solid bioconversion rate was 55.7%, which was 41.8%–62.2% higher than with NaOH-pretreatment alone and 22.2%–56.3% higher than with untreated corn stover. The best combination was obtained 5–9 days shorter than T90 and maintained good system operation stability. Only a fraction of the trace elements in the best combination was present in the resulting solution; more than 85% of the total amounts added were transferred into the solid fraction. Adding 0.897 g of Fe, 0.389 g of Co, and 0.349 g of Ni satisfied anaerobic digestion needs and enhanced biological activity at the beginning of the operation. The results showed that NaOH pretreatment and adding trace elements improve corn stover biodegradability and enhance biomethane production.

  8. Improving Biomethane Production and Mass Bioconversion of Corn Stover Anaerobic Digestion by Adding NaOH Pretreatment and Trace Elements.

    Liu, ChunMei; Yuan, HaiRong; Zou, DeXun; Liu, YanPing; Zhu, BaoNing; Li, XiuJin

    2015-01-01

    This research applied sodium hydroxide (NaOH) pretreatment and trace elements to improve biomethane production when using corn stover for anaerobic digestion. Full-factor experimental tests identified the best combination of trace elements with the NaOH pretreatment, indicating that the best combination was with 1.0, 0.4, and 0.4 mg·L(-1)·d(-1) of elements Fe, Co, and Ni, respectively. The cumulative biomethane production adding NaOH pretreatment and trace elements was 11,367 mL; total solid bioconversion rate was 55.7%, which was 41.8%-62.2% higher than with NaOH-pretreatment alone and 22.2%-56.3% higher than with untreated corn stover. The best combination was obtained 5-9 days shorter than T90 and maintained good system operation stability. Only a fraction of the trace elements in the best combination was present in the resulting solution; more than 85% of the total amounts added were transferred into the solid fraction. Adding 0.897 g of Fe, 0.389 g of Co, and 0.349 g of Ni satisfied anaerobic digestion needs and enhanced biological activity at the beginning of the operation. The results showed that NaOH pretreatment and adding trace elements improve corn stover biodegradability and enhance biomethane production. PMID:26137469

  9. Buffalo Cheese Whey Proteins, Identification of a 24 kDa Protein and Characterization of Their Hydrolysates: In Vitro Gastrointestinal Digestion

    Bassan, Juliana C.; Goulart, Antonio J.; Nasser, Ana L. M.; Bezerra, Thaís M. S.; Garrido, Saulo S.; Rustiguel, Cynthia B.; Guimarães, Luis H. S.; Monti, Rubens

    2015-01-01

    Milk whey proteins are well known for their high biological value and versatile functional properties, characteristics that allow its wide use in the food and pharmaceutical industries. In this work, a 24 kDa protein from buffalo cheese whey was analyzed by mass spectrometry and presented homology with Bos taurus beta-lactoglobulin. In addition, the proteins present in buffalo cheese whey were hydrolyzed with pepsin and with different combinations of trypsin, chymotrypsin and carboxypeptidase-A. When the TNBS method was used the obtained hydrolysates presented DH of 55 and 62% for H1 and H2, respectively. Otherwise for the OPA method the DH was 27 and 43% for H1 and H2, respectively. The total antioxidant activities of the H1 and H2 samples with and without previous enzymatic hydrolysis, determined by DPPH using diphenyl-p-picrylhydrazyl radical, was 4.9 and 12 mM of Trolox equivalents (TE) for H2 and H2Dint, respectively. The increased concentrations for H1 and H2 samples were approximately 99% and 75%, respectively. The in vitro gastrointestinal digestion efficiency for the samples that were first hydrolyzed was higher compared with samples not submitted to previous hydrolysis. After in vitro gastrointestinal digestion, several amino acids were released in higher concentrations, and most of which were essential amino acids. These results suggest that buffalo cheese whey is a better source of bioavailable amino acids than bovine cheese whey. PMID:26465145

  10. Long-term thermophilic mono-digestion of rendering wastes and co-digestion with potato pulp

    Bayr, S., E-mail: suvi.bayr@jyu.fi; Ojanperä, M.; Kaparaju, P.; Rintala, J.

    2014-10-15

    Highlights: • Rendering wastes’ mono-digestion and co-digestion with potato pulp were studied. • CSTR process with OLR of 1.5 kg VS/m{sup 3} d, HRT of 50 d was unstable in mono-digestion. • Free NH{sub 3} inhibited mono-digestion of rendering wastes. • CSTR process with OLR of 1.5 kg VS/m{sup 3} d, HRT of 50 d was stable in co-digestion. • Co-digestion increased methane yield somewhat compared to mono-digestion. - Abstract: In this study, mono-digestion of rendering wastes and co-digestion of rendering wastes with potato pulp were studied for the first time in continuous stirred tank reactor (CSTR) experiments at 55 °C. Rendering wastes have high protein and lipid contents and are considered good substrates for methane production. However, accumulation of digestion intermediate products viz., volatile fatty acids (VFAs), long chain fatty acids (LCFAs) and ammonia nitrogen (NH{sub 4}-N and/or free NH{sub 3}) can cause process imbalance during the digestion. Mono-digestion of rendering wastes at an organic loading rate (OLR) of 1.5 kg volatile solids (VS)/m{sup 3} d and hydraulic retention time (HRT) of 50 d was unstable and resulted in methane yields of 450 dm{sup 3}/kg VS{sub fed}. On the other hand, co-digestion of rendering wastes with potato pulp (60% wet weight, WW) at the same OLR and HRT improved the process stability and increased methane yields (500–680 dm{sup 3}/kg VS{sub fed}). Thus, it can be concluded that co-digestion of rendering wastes with potato pulp could improve the process stability and methane yields from these difficult to treat industrial waste materials.

  11. Níveis de proteína e de arginina digestível na ração pré-inicial de frangos de corte Protein and digestible arginine levels in pre-starter broiler rations

    Mônica Schaitl Thon

    2010-05-01

    Full Text Available O experimento foi conduzido para avaliar níveis de proteína bruta e arginina digestível na ração pré-inicial de frangos de corte e seus efeitos no desempenho das aves dos 7 aos 21 dias de idade. Foram utilizados 600 pintos da linhagem Cobb 500, distribuídos em delineamento de blocos casualizados em esquema fatorial 4 × 2, composto de quatro níveis de arginina digestível (1,363; 1,463; 1,563 e 1,663% e dois níveis de proteína bruta (20 e 22%, totalizando oito tratamentos, cada um com cinco repetições de 15 aves. Avaliaram-se o ganho de peso, o consumo de ração, o índice de conversão alimentar, a biometria dos órgãos do trato gastrintestinal e a digestibilidade e retenção de matéria seca e nitrogênio. O maior ganho de peso na fase de 1 a 14 dias de idade foi obtido com a ração com 22% de proteína bruta. Os níveis de arginina digestível tiveram efeito quadrático na conversão alimentar na fase de 1 a 10 dias de idade. O peso do esôfago e inglúvio foi maior nas aves alimentadas com a ração com 20% de proteína bruta, no entanto, houve efeito quadrático dos níveis de arginina digestível sobre o comprimento do intestino aos 10 dias de idade e sobre o peso do esôfago + inglúvio aos 3 dias de idade. Houve interação entre os níveis de proteína bruta e arginina digestível para o peso relativo do fígado aos 14 dias, que respondeu de forma quadrática ao nível de 20% de proteína bruta, e para o comprimento de intestino, cujo maior valor foi obtido com os níveis de 22% de proteína bruta e 1,603% de arginina digestível. O balanço e a retenção de nitrogênio foram maiores no nível de 22% de proteína bruta. O nível de 1,363% de arginina digestível atende às exigências nutricionais dos frangos de corte na fase pré-inicial.This experiment was carried out to evaluate levels of crude protein and digestible arginine in pre-starter broiler ration and their effects on the performance of the broilers from 7 to

  12. Study on the In Vitro Simulated Digestion Process of Whey Protein and Effects of Heat Treatment%乳清蛋白的体外模拟消化过程及热处理的影响

    何光华; 黄俊; 尤玉如; 肖功年; 刘士旺; 储小军; 魏培莲; 王仁风

    2012-01-01

    The in vitro pepsin and trypsin digestion process of whey protein and the effects of heat treatments were investigated in this paper. SDS-PAGE analytical results indicated that the effects of pepsin and trypsin on the digestion of whey protein was not very obvious. The dry heat-treatment (75-100 ℃, 1 h) did nearly not affect the in vitro digestion process by trypsin, while undcr the same conditions, the wet heat-treatment could remarkably improve the digestive effect of trypsin on the whey protein. After wet heat-treatment(75 ℃ and 100 ℃, 30 min) and trypsin digestion (8 h) of whey protein, its nitrogen releasing rate reached to 82.1% and 91.3%, respectively. However, the nitrogen releasing rate without wet heat-treatment was only 66.7%. This result suggested that the in vitro digestion process of whey protein was affected by different heat treatments. Wet heat treatment can effectively improve the digestion rate of whey protein, the higher the temperature of wet heat treatment, the faster the in vitro digestion rate of whey protein.%探讨了乳清蛋白体外胃蛋白酶和胰蛋白酶的消化过程,以及热处理对该消化过程的影响.SDS-PAGE分析结果表明,胃蛋白酶和胰蛋白酶对乳清蛋白的体外消化作用的影响不明显.干热处理(75℃和100C,1h)几乎不影响乳清蛋白的体外胰蛋白酶消化过程,而在同样条件下,湿热处理能显著提高胰蛋白酶对乳清蛋白的消化作用.乳清蛋白分别经75℃和100℃湿热处理30 min后,再由胰蛋白酶消化8h,其氮释放率分别达到82.1%和91.3%.而未湿热处理的氮释放率仅为66.7%,表明不同热处理方式对乳清蛋白的体外消化过程产生不同的影响.湿热处理能有效地提高乳清蛋白的消化速率,且湿热处理温度越高,乳清蛋白的体外消化速率越快.

  13. Improved protein sequence coverage by on resin deglycosylation and cysteine modification for biomarker discovery.

    Kamada, Haruhiko; Fugmann, Tim; Neri, Dario; Roesli, Christoph

    2009-02-01

    Membrane proteins and secreted factors (soluble proteins or extracellular matrix components) are the targets of most monoclonal antibodies, which are currently in clinical development. These proteins are frequently post-translationally modified, e.g. by the formation of disulfide bonds or by glycosylation, which complicates their identification using proteomics technologies. Here, we describe a novel methodology for the on resin deglycosylation and cysteine modification of proteins after in vitro, in vivo or ex vivo biotinylation. Biotinylated proteins are captured on streptavidin resin and all subsequent modifications, as well as the proteolytic digestion, which yields peptides for MS analysis, are performed on resin. Using biotinylated bovine fetuin-A as a test protein, an improvement in sequence coverage from 7.9 to 58.7% could be shown, including the identification of all three glycosylation sites. Furthermore, a complex mixture derived from the ex vivo biotinylation of vascular structures in human kidney with cancer obtained by perfusion after surgical resection revealed almost a doubling of sequence coverage for all checked proteins when analyzed by LC-MALDI TOF/TOF. PMID:19137555

  14. Yeast (different sources and levels) as protein source in diets of reared piglets: effects on protein digestibility and N-metabolism.

    Spark, M; Paschertz, H; Kamphues, J

    2005-01-01

    The aim of this study was to examine the feeding value of different yeasts as a substitute for soya bean meal, the main protein source in diets of weaned piglets. Tested two yeasts were already available on the market, Saccharomyces cerevisiae and Kluyveromyces lactis (beer and milk yeast), which replaced 40% of the soya bean meal in the diets. Furthermore, a yeast (Kluyveromyces fragilis) grown on whey, a side-product of cheese production, was used in increasing concentrations in the diets, so that increasing amounts of the soya bean meal (20%, 40% and 60%) could be replaced. As proved in these experiments, a replacement of 60% of the soya protein with whey yeast protein had positive effects on the performances (daily weight gain) and on the N-metabolism and did not have negative effects on the health or the faeces consistency. The whey yeast stands out because of its high protein quality (N-digestibility and N-retention). Furthermore, the replacement of soya bean meal with highly digestible yeasts is welcomed under the aspect of animal health, because of the reduction of anti-nutritive soya components (stachyose, glycinin) in diets of weaned piglets. The controlled production conditions of the yeasts result in a high feed safety; in addition, the yeast as an end-of-pipe-product is a resource conserving and valuable feed. A main stimulus for the use of yeasts, however, in a food production controlled by economic standpoints, is their price and the costs of other competing feeds. PMID:15787992

  15. The influence of straw meal on the crude protein and amino acid metabolism and the digestibility of crude nutrients in broiler hens. 3

    In two experiments with colostomized broiler hens the influence of a straw meal supplement on the apparent digestibility of the amino acids of the ration and the 15N-labelled basic amino acids in wheat was studied. In experiment 1 the animals received 120 g mixed feed plus 0, 20, 30 and 40 g straw meal per animal and day. The digestibility of the amino acids decreased on average from 86% to 83%, 80% and 79% with the growing straw intake. In contrast to the control variant, 20 g straw meal intake resulted in a singificant decrease of digestibility for lysine, histidine, glycine, tyrosine, phenylanaline, cystine and methionine. 30 and 40 g straw meal reduced significantly the digestibility of all amino acids with the exception of arginine. The amino acid composition of the crude protein in feces changed only very slightly due to the straw supplement. In experiment 2 15N-labelled wheat was a component of the ration. Of the 15N-labelled amino acids lysine, histidine and arginine, 88, 90 and 95% were apparently digested. The adaptation of the animals to straw meal intake did not change the digestibility of the amino acids. (author)

  16. Stability of Trans-Resveratrol Encapsulated in a Protein Matrix Produced Using Spray Drying to UV Light Stress and Simulated Gastro-Intestinal Digestion.

    Koga, Clarissa C; Andrade, Juan E; Ferruzzi, Mario G; Lee, Youngsoo

    2016-02-01

    Trans-resveratrol has demonstrated the potential to provide both therapeutic and preventive activities against chronic diseases such as heart disease and cancer. The incorporation of trans-resveratrol into food products would allow for broader access of this bioactive compound to a larger population. However, this strategy is limited by instability of trans-resveratrol under environmental conditions and within the digestive system leading to isomerization of trans-resveratrol (bioactive form) to cis-resveratrol (bio-inactive form). Studies in the stabilization of trans-resveratrol into protein microparticles are presented. Trans-resveratrol was encapsulated using whey protein concentrate (WPC) or sodium caseinate (SC), with or without anhydrous milk fat (AMF). Binding of resveratrol and aromatic residues in protein was estimated utilizing the Stern-Volmer equation and the number of tryptophan residues. The stability of encapsulated resveratrol was evaluated after exposure to ultraviolet A (UVA) light and 3-stage in vitro digestion. After UVA light exposure, SC-based microcapsules maintained a higher trans:cis resveratrol ratio (0.63, P < 0.05) than WPC-based microcapsules (0.43) and unencapsulated resveratrol (0.49). In addition, encapsulation of resveratrol in both protein microparticles led to an increased digestive stability and bioaccessibility in comparison to unencapsulated resveratrol (47% and 23%, respectively, P < 0.05). SC-based microcapsules provided a higher digestive stability and bioaccessibility (86% and 81%; P < 0.05) compared to WPC-based microcapsules (71% and 68%). The addition of AMF to the microcapsules did not significantly change the in vitro digestion values. In conclusion, SC-based microencapsulation increased the stability of trans-resveratrol to UVA light exposure and simulated digestion conditions. This encapsulation-system-approach can be extended to other labile, bioactive polyphenols. PMID:26677808

  17. The role of condensed tannins in the nutritional value of Lotus pedunculatus for sheep. 4. Sites of carbohydrate and protein digestion as influenced by dietary reactive tannin concentration.

    Barry, T N; Manley, T R; Duncan, S J

    1986-01-01

    cell-wall digestion, probably due to bonding with lignin. However, the considerable post-rumen digestion of hemicellulose was not associated with post-rumen lignin digestion. 6. It was concluded that a desired concentration of CT in Lotus sp. should represent a balance between the positive effect of CT in improving the efficiency of N digestion and their negative effect in depressing rumen carbohydrate digestion. A recommended concentration is 30-40 g/kg DM. PMID:3663569

  18. Sequencing of proteins from two-dimensional gels by using in situ digestion and transfer of peptides to polyvinylidene difluoride membranes: application to proteins associated with sensitization in Aplysia.

    Kennedy, T. E.; Gawinowicz, M A; Barzilai, A; Kandel, E R; Sweatt, J D

    1988-01-01

    We have developed a method for obtaining partial internal amino acid sequence data from proteins isolated directly from preparative two-dimensional polyacrylamide gels. Proteins from a crude cell homogenate are separated using preparative two-dimensional polyacrylamide gel electrophoresis. Then, the gel is stained with Coomassie blue and the protein spots of interest are cut out. The in situ protein is digested with Staphylococcus aureus V8 protease in a second polyacrylamide gel and the pept...

  19. Ileal and total tract apparent crude protein and amino acid digestibility of ensiled and dried cassava leaves and sweet potato vines in growing pigs

    Nguyen, T.H.L.; Ngoan, L.D.; Bosch, G.; Verstegen, M.W.A.; Hendriks, W.H.

    2012-01-01

    The present study was conducted to determine the ileal and total tract apparent digestibility of crude protein (CP) and amino acids (AA) in ensiled and dried cassava (Manihot esculenta) leaves (CL) and sweet potato (Ipomoea batatas) vines (SPV) as a single ingredient or in a 50:50 mixture of CL + SP

  20. Improvement of protein content in winter wheat with physicochemical mutagens

    Induced mutation is one of the approaches to improve the protein content of wheat. In present experiments the wheat mutation contained high protein, gluten and lysine were obtained by means of treating dry seeds with different physicochemical mutation. The procedure of breeding for improving the qiality of wheat was found

  1. Monolithic liquid-chromatography columns for protein analysisprotein digest separation and integrated systems

    van de Meent, M.H.M.

    2010-01-01

    The objectives of the research described in this thesis are to evaluate the applicability of both silica-based and polymeric monolithic columns for protein analysis. The first part describes investigations into the effects of column length and stationary-phase chemistry on the separation of protein

  2. The effects of inulin supplementation of diets with or without hydrolysed protein sources on digestibility, faecal characteristics, haematology and immunoglobulins in dogs.

    Verlinden, A; Hesta, M; Hermans, J M; Janssens, G P J

    2006-11-01

    Dogs with food allergy are often treated by giving a diet with hydrolysed protein sources. Prebiotics might also be successful in prevention and treatment of allergic disease through their effect on the colonic microflora, analogous to studies on probiotics in allergic children. The present study was set up to investigate the effect of supplementing inulin (IN) to commercial hypoallergenic dog diets on apparent nutrient digestibility, faecal characteristics, haematology and Ig in dogs. Supplementation of 3 % IN did not affect faecal pH, food and water intake and urine production. Compared with the intact protein diet with a limited number of ingredients (L), the diet with a hydrolysed protein source (H) resulted in an increased water intake (Pdogs fed the L+IN diet. Total faecal IgA concentrations were lower in the H group (P<0.05) because of lower antigenic stimulation of hydrolysed protein, which implies that hydrolysed protein is really hypoallergenic. The present study indicates that the use of hydrolysed protein diets for canine food allergy treatment can affect digestibility and that combination with IN affected apparent protein digestibility but not IgA response. PMID:17092385

  3. Actinidin from kiwifruit (Actinidia deliciosa cv. Hayward) increases the digestion and rate of gastric emptying of meat proteins in the growing pig.

    Montoya, Carlos A; Rutherfurd, Shane M; Olson, Trent D; Purba, Ajitpal S; Drummond, Lynley N; Boland, Mike J; Moughan, Paul J

    2014-03-28

    The present study aimed to investigate the effect of dietary actinidin on the kinetics of gastric digestion of beef muscle proteins and on the rate of stomach emptying in growing pigs. For this purpose, 120 pigs (mean body weight 28 (sd 2·9) kg) were fed beef muscle protein-based diets containing either actinidin (fresh green kiwifruit pulp or gold kiwifruit pulp supplemented with purified actinidin) or no actinidin (fresh gold kiwifruit pulp or green kiwifruit pulp with inactivated actinidin). Additionally, fifteen pigs were fed with a protein-free diet to determine the endogenous protein flow. Pigs were euthanised at exactly 0·5, 1, 3, 5 and 7 h postprandially (n 6 per time point for each kiwifruit diet and n 3 for protein-free diet). Stomach chyme was collected for measuring gastric retention, actinidin activity, individual beef muscle protein digestion based on SDS-PAGE and the degree of hydrolysis based on the appearance of free amino groups. The stomach emptying of DM and N was faster when actinidin was present in the diet (P34 kDa; P< 0·05). In conclusion, dietary actinidin fed in the form of fresh green kiwifruit increased the rate of gastric emptying and the digestion of several beef muscle proteins. PMID:24252432

  4. Phytase improves apparent total tract digestibility of phosphorus and calcium in piglets fed diets with adequate or reduced phosphorus content.

    Kühn, I; Partanen, K

    2012-12-01

    The effect of a thermotolerant 6-phytase produced by Trichoderma reesei on performance and apparent total tract digestibility (ATTD) of P and Ca was evaluated in 192 weaned piglets (randomized block design; 16 replicates; 2 piglets each). Diets based on wheat (Triticum aestivum), barley (Hordeum vulgare), oat (Avena sativa), soybean (Glycine max) meal, and whey protein with adequate [positive control (PC)] or reduced [negative control (NC)] Ca and P levels were fed for 46 d after weaning. The PC and NC diets contained 8.0 and 6.4 g/kg Ca and 2.9 and 1.9 g/kg digestible P, respectively. Pelleted diets contained 0, 500, or 1000 phytase units (FTU)/kg. Growth performance and G:F were measured during starter (25 d) and weaner pig (21 d) periods. The ATTD of Ca and P was determined by spot sampling at the end of the weaner pig period (8 pens per treatment over 5 consecutive d). Data were analyzed using a mixed model with random block effect and fixed effect of dietary P and phytase level and their interaction. Dietary P level did not affect ADG or G:F of piglets over the entire feeding period (P > 0.10) whereas phytase increased G:F (P feed DM) without further increase in the weaner pig period (P > 0.10). A P × phytase interaction (P < 0.05) was observed for ATTD of P, more so for NC (48, 61, and 68%, respectively) than PC diets (52, 62, and 61%). The ATTD of Ca was higher (P < 0.05) for PC than NC diets (68 vs. 58%) and increased quadratically by phytase (61, 65, and 63%). In conclusion, the phytase tested enhanced piglet performance during the postweaning period and increased ATTD of P and Ca. PMID:23365327

  5. Fibrillization of whey proteins improves foaming capacity and foam stability at low protein concentrations

    Oboroceanu, Daniela; Wang, Lizhe; Magner, Edmond; Auty, Mark A. E.

    2014-01-01

    peer-reviewed The foaming properties of fibrillar whey proteins were compared with those of native or denatured whey proteins and also with egg white protein. Whey protein foaming capacity and stability were related to protein concentration, pH, time of whipping, pressure and heating treatments. Foams produced from fibrils showed significant improvement in foaming capacity and stability when compared with non-fibrillar whey proteins. Dynamic high shear (microfluidization) or moderate shear...

  6. Concentrados protéicos para bovinos: 2. Digestão pós-ruminal da matéria seca e da proteína Protein concentrates for bovines: 2. Post-ruminal digestion of protein and dry matter

    N.M. Rodriguez

    2003-06-01

    Full Text Available O objetivo deste trabalho foi avaliar a digestão pós-ruminal de fontes protéicas. Utilizou-se a técnica de sacos de náilon móveis introduzidos no duodeno e colhidos nas fezes. Os alimentos introduzidos no intestino foram anteriormente incubados em sacos de náilon no rúmen ou foram separados das frações solúveis em água. O farelo de soja foi a fonte protéica de maior degradabilidade ruminal (73% e altíssima digestibilidade intestinal (98%. O glúten de milho foi a fonte protéica menos degradada no rúmen (16% e sua parcela sobrepassante foi altamente digerida no intestino (95%. Os farelos de algodão e de mamona mostraram características semelhantes com digestibilidade total da proteína de 95% e em torno de 65% de degradabilidade ruminal. O farelo de palmiste foi menos digerido (87% digestibilidade total quando incubado. Farinhas de origem animal foram menos digeridas no intestino e também no rúmen (fora o glúten, com digestibilidades totais de 75% para farinha de carne e ossos, 85% para farinha de penas e vísceras e farinha de peixe I, 67% para farinha de peixe II e apenas 46% para farinha de sangue.This work aimed to evaluate post ruminal digestion of protein sources, by mobile nylon bags introduced in the duodenum of fistulated steers and collected from faeces. The feedstuffs were previously incubated in the rumen or separated the water soluble fraction before the intestinal digestion test. The soybean meal at 5% passage rate showed the highest ruminal protein degradability (73% and highest intestinal digestibility (98%. Gluten meal was the least rumen degradable protein (16% and showed a high digestible undegradable protein (95% if rumen incubated previously. Cottonseed meal and castorbean meal had similar patterns of digestion with total digestible protein of 95% and about 70% of rumen degradability. Rumen incubated palmist meal was less digestible (87% of total digestibility. Animal origin meals were less digestible

  7. Improvement of anaerobic digestion of waste-activated sludge by using H₂O₂ oxidation, electrolysis, electro-oxidation and thermo-alkaline pretreatments.

    Feki, Emna; Khoufi, Sonia; Loukil, Slim; Sayadi, Sami

    2015-10-01

    Disintegration of municipal waste-activated sludge (WAS) is regarded as a prerequisite of the anaerobic digestion process to reduce sludge volume and improve biogas yield. Pretreatment of WAS using thermo-alkaline (TA), H2O2 oxidation, electrolysis and electro-oxidation (EO) processes were investigated and compared in term of COD solubilization and biogas production. For each pretreatment, the influences of different operational variables were studied in detail. At optimum conditions, EO gave the maximum COD solubilization (28 %). The effects of pretreatments under the optimum conditions on anaerobic digestion were experienced with biochemical methane potential assay. Significant increases in biogas yield up to 78 and 40 % were observed respectively in the EO and TA pretreated samples compared to raw sludge. Results clearly revealed that the application of EO is a significant alternative method for the improvement of WAS anaerobic digestion. PMID:25982985

  8. Improved Functional Characteristics of Whey Protein Hydrolysates in Food Industry

    Jeewanthi, Renda Kankanamge Chaturika; Lee, Na-Kyoung; Paik, Hyun-Dong

    2015-01-01

    This review focuses on the enhanced functional characteristics of enzymatic hydrolysates of whey proteins (WPHs) in food applications compared to intact whey proteins (WPs). WPs are applied in foods as whey protein concentrates (WPCs), whey protein isolates (WPIs), and WPHs. WPs are byproducts of cheese production, used in a wide range of food applications due to their nutritional validity, functional activities, and cost effectiveness. Enzymatic hydrolysis yields improved functional and nutr...

  9. Hydrolysis of soybean protein improves iron bioavailability

    Iron is an important trace metal element in human body. Iron deficiency affects human health, especially pregnant women and children. Soybean protein is a popular food in Asia and can contain a high amount of iron (145.70±0.74 ug/g); however, it is usually reported as an inhibitor of iron absorption...

  10. Expression of occludin, tight-junction-associated protein, in human digestive tract.

    Kimura, Y; Shiozaki, H.; Hirao, M; Maeno, Y.; Doki, Y.; Inoue, M; Monden, T.; Ando-Akatsuka, Y.; Furuse, M; Tsukita, S; Monden, M

    1997-01-01

    The tight junction seals cells together at a subapical location and functionally separates the plasma membrane into an apical and a basolateral domain. This junction is one of the most characteristic structural markers of the polarized epithelial cell. Recently, occludin has been identified as an integral transmembrane protein localizing at the tight junction and directly associated with ZO-1, an undercoat-constitutive cytoplasmic protein. We have investigated occludin expression in conjuncti...

  11. Identification of a Low Digestibility δ-Conglutin in Yellow Lupin (Lupinus luteus L.) Seed Meal for Atlantic Salmon (Salmo salar L.) by Coupling 2D-PAGE and Mass Spectrometry

    Ogura, Takahiro; Hernández, Adrián; Aizawa, Tomoko; Ogihara, Jun; Sunairi, Michio; Alcaino, Javier; Salvo-Garrido, Haroldo; Maureira-Butler, Iván J.

    2013-01-01

    The need of quality protein in the aquaculture sector has forced the incorporation of alternative plant proteins into feeding diets. However, most plant proteins show lower digestibility levels than fish meal proteins, especially in carnivorous fishes. Manipulation of protein content by plant breeding can improve the digestibility rate of plant proteins in fish, but the identification of low digestibility proteins is essential. A reduction of low digestibility proteins will not only increase feed efficiency, but also reduce water pollution. Little is known about specific digestible protein profiles and/or molecular identification of more bioavailable plant proteins in fish diets. In this study, we identified low digestibility L. luteus seed proteins using Atlantic salmon (Salmo salar) crude digestive enzymes in an in vitro assay. Low digestibility proteins were identified by comparing SDS-PAGE banding profiles of digested and non-digested lupin seed proteins. Gel image analysis detected a major 12 kDa protein band in both lupin meal and protein isolate digested products. The 12 kDa was confirmed by 2D-PAGE gels and the extracted protein was analyzed with an ion trap mass spectrometer in tandem mass mode. The MS/MS data showed that the 12 kDa low digestibility protein was a large chain δconglutin, a common seed storage protein of yellow lupin. Comparison of the protein band profiles between lupin meal and protein isolates showed that the isolatation process did not affect the low digestibility of the 12 kDa protein. PMID:24278278

  12. Identification of a low digestibility δ-Conglutin in yellow lupin (Lupinus luteus L. seed meal for atlantic salmon (Salmo salar L. by coupling 2D-PAGE and mass spectrometry.

    Takahiro Ogura

    Full Text Available The need of quality protein in the aquaculture sector has forced the incorporation of alternative plant proteins into feeding diets. However, most plant proteins show lower digestibility levels than fish meal proteins, especially in carnivorous fishes. Manipulation of protein content by plant breeding can improve the digestibility rate of plant proteins in fish, but the identification of low digestibility proteins is essential. A reduction of low digestibility proteins will not only increase feed efficiency, but also reduce water pollution. Little is known about specific digestible protein profiles and/or molecular identification of more bioavailable plant proteins in fish diets. In this study, we identified low digestibility L. luteus seed proteins using Atlantic salmon (Salmo salar crude digestive enzymes in an in vitro assay. Low digestibility proteins were identified by comparing SDS-PAGE banding profiles of digested and non-digested lupin seed proteins. Gel image analysis detected a major 12 kDa protein band in both lupin meal and protein isolate digested products. The 12 kDa was confirmed by 2D-PAGE gels and the extracted protein was analyzed with an ion trap mass spectrometer in tandem mass mode. The MS/MS data showed that the 12 kDa low digestibility protein was a large chain δconglutin, a common seed storage protein of yellow lupin. Comparison of the protein band profiles between lupin meal and protein isolates showed that the isolatation process did not affect the low digestibility of the 12 kDa protein.

  13. Antioxidant and Chelating Activity of Nontoxic Jatropha curcas L. Protein Hydrolysates Produced by In Vitro Digestion Using Pepsin and Pancreatin

    Santiago Gallegos Tintoré

    2015-01-01

    Full Text Available The antioxidant and metal chelating activities in J. curcas protein hydrolysates have been determined. The hydrolysates were produced by treatment of a nontoxic genotype with the digestive enzymes pepsin and pancreatin and then were characterized by fast protein liquid chromatography and reverse phase chromatography. Peptidic fractions with higher radical scavenging activity were analysed by matrix-assisted laser desorption/ionization mass spectrometry. The antioxidant activity was determined by measuring inhibition of the oxidative degradation of β-carotene and by measuring the reactive oxygen species (ROS in Caco-2 cell cultures. Cu2+ and Fe2+ chelating activities were also determined. The hydrolysates inhibited the degradation of β-carotene and the formation of ROS in Caco-2 cells. The lower molecular weight peptidic fractions from FPLC had stronger antioxidant activity in cell cultures compared with the hydrolysates, which correlated with a higher content in antioxidant and chelating amino acids. These fractions were characterized by a large presence of peptides with different molecular masses. The hydrolysates exhibited both Cu2+ and Fe2+ chelating activity. It was concluded that J. curcas is a good source of antioxidant and metal chelating peptides, which may have a positive impact on the economic value of this crop, as a potential source of food functional components.

  14. Short Term (14 Days) Consumption of Insoluble Wheat Bran Fibre-Containing Breakfast Cereals Improves Subjective Digestive Feelings, General Wellbeing and Bowel Function in a Dose Dependent Manner

    Louise Dye; David Chesters; Peter Allan; Elaine Howarth; Jenny Walton; Alexa Hoyland; Lawton, Clare L.

    2013-01-01

    This study investigated whether increasing insoluble (predominantly wheat bran) fibre over 14 days improves subjective digestive feelings, general wellbeing and bowel function. A single centre, multi-site, open, within subjects design with a 14 day non-intervention (baseline) monitoring period followed by a 14 day fibre consumption (intervention) period was performed. 153 low fibre consumers (

  15. Bioaugmentation of a Two-Stage Thermophilic (68°C/55°C) Anaerobic Digestion Concept for Improvement of the Methane Yield From Cattle Manure

    Bangsø Nielsen, Henrik; Mladenovska, Zuzana; Ahring, Birgitte Kiær

    2007-01-01

    The possibility of improving a two-stage (68°C/55°C) anaerobic digestion concept for treatment of cattle manure was studied. In batch experiments, a 10-24% increase of the specific methane yield from cattle manure and its fractions was obtained, when the substrates were inoculated with bacteria of...... of the two-stage setup....

  16. Evaluation of bromine and iodine content of milk whey proteins combining digestion by microwave-induced combustion and ICP-MS determination.

    da Silva, Sabrina Vieira; Picoloto, Rochele Sogari; Flores, Erico Marlon Moraes; Wagner, Roger; dos Santos Richards, Neila Silvia Pereira; Barin, Juliano Smanioto

    2016-01-01

    The bromine and iodine content of whey protein concentrate (WPC), hydrolysate (WPH), and isolate (WPI) was evaluated combining microwave-induced combustion (MIC) digestion with inductively coupled plasma mass spectrometry (ICP-MS) determination. MIC digestion allowed the decomposition of up to 500 mg of samples using diluted NH4OH solution (25 mmol L(-1)) for absorption of analytes, assuring the compatibility with ICP-MS determination. Accuracy was evaluated using milk powder certified reference material (NIST 8435) with good agreements for Br and I (102% and 105%, respectively). For Br and I, the limit of quantification obtained by ICP-MS was 7 and 281 times lower in comparison with ion chromatography determination, respectively. Iodine could be enriched in whey protein production and up to 70% of the tolerable upper intake level was found, thus revealing the need to monitor it in whey proteins. On the other hand, the concentration of Br was below its acceptable daily intake. PMID:26212983

  17. Dewaterability of thermophilically digested biosolids: effects of temperature and cellular polymeric substances

    Thermophilic processes digest sludge at high temperatures to produce Class A biosolids.Recent research work revealed that digestion temperature is the predominant factor affecting dewaterability of thermophilic biosolids. This paper presents findings of a laboratory study that investigated how various digestion temperatures affect dewaterability of digested biosolids, studied the phase partition of the substances affecting dewaterability in digested biosolids, and tested the role of cellular polymeric substances in affecting dewaterability.Secondary sludges were digested at 40-70oC or 22oC for up to 12 days. Centrate from thermophilically digested biosolids were treated with protease and boiling. This study found that, during the first few hours of digestion, higher temperatures resulted in more rapid and more significant deterioration in dewaterability than lower digestion temperatures. Continued digestion resulted in either improved (60oC or 70oC), or unchanged (40oC or 50oC), or gradually deteriorated dewaterability (22oC). The substances affecting dewaterability were primarily located in the liquid phase of thermophilically digested biosolids. Boiling treatment did not result in significant changes in dewaterability. Protease treatment of the liquid phase of thermophilic biosolids improved dewaterability by 13-19%. Such an improvement confirmed the role of proteins in affecting dewaterability. (author)

  18. Milk protein tailoring to improve functional and biological properties

    JEAN-MARC CHOBERT

    2012-01-01

    Full Text Available Proteins are involved in every aspects of life: structure, motion, catalysis, recognition and regulation. Today's highly sophisticated science of the modifications of proteins has ancient roots. The tailoring of proteins for food and medical uses precedes the beginning of what is called biochemistry. Chemical modification of proteins was pursued early in the twentieth century as an analytical procedure for side-chain amino acids. Later, methods were developed for specific inactivation of biologically active proteins and titration of their essential groups. Enzymatic modifications were mainly developed in the seventies when many more enzymes became economically available. Protein engineering has become a valuable tool for creating or improving proteins for practical use and has provided new insights into protein structure and function. The actual and potential use of milk proteins as food ingredients has been a popular topic for research over the past 40 years. With today's sophisticated analytical, biochemical and biological research tools, the presence of compounds with biological activity has been demonstrated. Improvements in separation techniques and enzyme technology have enabled efficient and economic isolation and modification of milk proteins, which has made possible their use as functional foods, dietary supplements, nutraceuticals and medical foods. In this review, some chemical and enzymatic modifications of milk proteins are described, with particular focus on their functional and biological properties.

  19. Structure engineering of filled protein microbeads to tailor release of oil droplets in gastric digestion.

    van Leusden, P; den Hartog, G J M; Bast, A; Postema, M; van der Linden, E; Sagis, L M C

    2016-08-10

    Oil-soluble components can be encapsulated in an O/W1/W2 microsystem, in which they are dissolved in oil droplets dispersed in a gelled microbead (W1), which forms a barrier between the oil droplets and the aqueous continuous phase (W2). We investigated the rate and mechanism of breakdown of protein microbeads in a simulated gastric system, and studied the influence of microbead protein concentration, gelling method (cold-set, slow and fast heat-set), and further processing (freeze-drying), on the breakdown process. Breakdown rate decreased with increasing protein content of the beads, for the same method of production. Due to the porosity of the slowly-heated heat-set beads, breakdown occurred evenly throughout the entire bead. Cold-set microbeads of 10% protein broke down slightly slower than the heat-set microbeads of 15%. The denser surface of the 10% beads slowed down the diffusion of the enzymes into the bead's interior, causing the beads to be broken down from the outside inward. All these beads broke down within one hour. Increasing the rate of temperature increase during the heating step dramatically slowed breakdown. There was no significant breakdown of rapidly heated beads within 138 minutes, even though no difference in microstructure between rapidly and slowly heated beads was visible with electron microscopy. Freeze-drying of the beads also slowed their breakdown. After 132 minutes more than half the measured particle volume of were intact beads. Freeze-drying changed the microstructure of the beads irreversibly: rehydrating the dried beads did not result in a breakdown behaviour similar to that of unprocessed beads. PMID:27458022

  20. Antioxidant and antimicrobial activity of lecithin free egg yolk protein preparation hydrolysates obtained with digestive enzymes

    Aleksandra Zambrowicz

    2012-12-01

    Full Text Available ABSTRACT:Several biological activities have now been associated with egg protein- derived peptides, including antihypertensive, antimicrobial, immunomodulatory, anticancer and antioxidantactivities, highlighting the importance of these biopeptides in human health, and disease prevention and treatment. Special attention has been given to peptides with antioxidant and antimicrobial activities as a new source of natural preservatives in food industry. In this study, the antioxidant properties of the egg-yolk protein by-product (YP hydrolysates were evaluated based on their radical scavenging capacity (DPPH, Fe2+chelating effect and ferric reducing power (FRAP. Furthermore, antimicrobial properties of obtained hydrolysates against Bacillus species were studied. The degrees (DHs of hydrolysis for 4h hydrolysates were: 19.1%, 13.5% and 13.0%, for pepsin, chymotrypsin and trypsin, respectively. Pepsin was the most effective in producing the free amino groups (1410.3 μmolGly/g. The RP-HPLC profiles of the protein hydrolysates showed differences in the hydrophobicity of the generated peptides.Trypsin hydrolysate obtained after 4h reaction demonstrated the strongest DPPH free radical scavenging activity (0.85 µmol Troloxeq/mg. Trypsin and chymotrypsin hydrolysates obtained after 4h reaction exhibited 4 times higher ferric reducing capacity than those treated bypepsin. The hydrolysis products obtained from YP exhibited significant chelating activity. The 4h trypsin hydrolysate exhibited weak antimicrobial activity against B. subtilis B3; B. cereus B512; B. cereus B 3p and B. laterosporum B6.

  1. Gut health immunomodulatory and anti-inflammatory functions of gut enzyme digested high protein micro-nutrient dietary supplement-Enprocal

    Kanwar Rupinder K

    2009-01-01

    Full Text Available Abstract Background Enprocal is a high-protein micro-nutrient rich formulated supplementary food designed to meet the nutritional needs of the frail elderly and be delivered to them in every day foods. We studied the potential of Enprocal to improve gut and immune health using simple and robust bioassays for gut cell proliferation, intestinal integrity/permeability, immunomodulatory, anti-inflammatory and anti-oxidative activities. Effects of Enprocal were compared with whey protein concentrate 80 (WPC, heat treated skim milk powder, and other commercially available milk derived products. Results Enprocal (undigested and digested (Enprocal D selectively enhanced cell proliferation in normal human intestinal epithelial cells (FHs74-Int and showed no cytotoxicity. In a dose dependent manner Enprocal induced cell death in Caco-2 cells (human colon adencarcinoma epithelial cells. Digested Enprocal (Enprocal D: gut enzyme cocktail treated maintained the intestinal integrity in transepithelial resistance (TEER assay, increased the permeability of horseradish peroxidase (HRP and did not induce oxidative stress to the gut epithelial cells. Enprocal D upregulated the surface expression of co-stimulatory (CD40, CD86, CD80, MHC I and MHC II molecules on PMA differentiated THP-1 macrophages in coculture transwell model, and inhibited the monocyte/lymphocyte (THP-1/Jurkat E6-1 cells-epithelial cell adhesion. In cytokine secretion analyses, Enprocal D down-regulated the secretion of proinflammatory cytokines (IL-1β and TNF-α and up-regulated IFN-γ, IL-2 and IL-10. Conclusion Our results indicate that Enprocal creates neither oxidative injury nor cytotoxicity, stimulates normal gut cell proliferation, up regulates immune cell activation markers and may aid in the production of antibodies. Furthermore, through downregulation of proinflammatory cytokines, Enprocal appears to be beneficial in reducing the effects of chronic gut inflammatory diseases such as

  2. Assessment of digestibility improving enzymes potential to reduce greenhouse gas emissions in broiler production

    Bundgaard, Anja Marie; Dalgaard, Randi; Thrane, Mikkel;

    2012-01-01

    Axtra XAP was not included in the diet and one where Axtra XAP was included in the diet. Axtra XAP facilitated higher inclusion rates of cheaper (and possibly more environmentally friendly) feed ingredients that have a lower nutritional value in the diet. Axtra XAP’s environmental improvement potential...... was documented through a Life Cycle Assessment (LCA) by applying a consequential approach including indirect land use changes (ILUC). The findings showed that Axtra XAP could reduce GHG emissions from broiler production by 5%. A sensitivity analysis was conducted to assess the robustness of the results...

  3. Disulphide bonds in wheat gluten: cystine peptides derived from gluten proteins following peptic and thermolytic digestion.

    Keck, B; Köhler, P; Wieser, H

    1995-06-01

    Gluten from the wheat variety Rektor was extracted with 70% aqueous ethanol. The insoluble portion (whole glutenin) was partially hydrolysed with trypsin at pH 6.5 and separated on a Sephadex G25 column. The high molecular weight fraction 1 was further hydrolysed with pepsin at pH 2.0. To remove low molecular weight proteins, a portion of whole glutenin was extracted with dilute acetic acid. The residue (enriched glutenin), which contained mostly LMW and HMW subunits of glutenin, was hydrolysed with thermolysin at pH 6.5. The peptic and tryptic hydrolysates were separated on a Sephadex G25 column and the peptide fractions with the highest cystine content were separated further by reversed-phase high-performance liquid chromatography (RP-HPLC). Cystine peptides were detected by differential chromatography (RP-HPLC prior to and after reduction of disulphide bonds) and then isolated by preparative RP-HPLC. After reduction, cysteine peptides were alkylated and analysed for their amino acid sequence. Altogether, 19 cystine peptides were characterized and assigned to known sequences of gluten proteins; 16 peptides confirmed the positions of disulphide bonds present in LMW subunits and gamma-gliadins, as described previously. For the first time, a cystine peptide has been isolated, representing an intermolecular disulphide bond between the y-type of HMW and LMW subunits. Furthermore, a cystine peptide was assigned to gamma-gliadins; thus, all cysteine residues of gamma-gliadins are documented by at least one cystine peptide. One peptide analysed came from the alpha-amylase inhibitor CM 16. Altogether the results indicate that the intramolecular linkages of gluten proteins are not formed at random, but are strongly directed.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:7668061

  4. P164-M Optimization of the Gel Shredder: A Centrifugal Device for Automated In-gel Digestion with Improved Peptide Recovery.

    Lazarev, A.; Rejtar, T.; Karger, B. L.

    2007-01-01

    Proteomic workflow frequently involves gel separations. Poor peptide recovery from in-gel digestion procedures is at large influenced by the properties of polyacrylamide gel, which restricts access of proteolytic enzymes to the protein substrate as well as prevents complete extraction of certain peptides. We have designed an optimized centrifugal device which allows integrated washing, destaining and shredding of gel bands into uniform blocks of controlled size, roughly 100 μm, prior to the e...

  5. The Effects of Fortification of Legumes and Extrusion on the Protein Digestibility of Wheat Based Snack

    Swapnil S. Patil; Margaret A. Brennan; Susan L. Mason; Brennan, Charles S.

    2016-01-01

    Cereal food products are an important part of the human diet with wheat being the most commonly consumed cereal in many parts of the world. Extruded snack products are increasing in consumer interest due to their texture and ease of use. However, wheat based foods are rich in starch and are associated with high glycaemic impact products. Although legume materials are generally rich in fibre and protein and may be of high nutritive value, there is a paucity of research regarding their use in e...

  6. A continuum of research projects to improve extraction of oil and proteins in oilseed plants

    Miquel Martine

    2011-05-01

    Full Text Available A key challenge in the actual context of fossil sources rarefaction, global warming, and of increase of the world global population, is to promote the use of molecules derived from renewable sources such as plants. Among these molecules, lipids and proteins are targets of interest. Plant lipids from oilseeds are attractive substitutes to the use of fossil oil. Till the beginning of the 20th century, numerous products used in the daily life were derived from natural renewable products. For instance, plant oil was commonly used as fuel for vehicles and was entering in the composition of paintings, lubricants etc. Unfortunately, natural oils have been progressively replaced by cheaper fossil oil in the fabrication of these products. Nowadays, fossil oils are becoming increasingly expensive being a finite comodity. It is thus important to reduce our dependence from fossil oil and develop substitution industries. Oilseeds contain important amounts of proteins which are mainly used in feed. As several kilograms of plant protein are needed to obtain one kilogram of animal protein, the interest toward using plant protein in food is reinforced. The developments of the use of plant lipids, as well as proteins are a major stakes for the competitiveness of European agriculture and industry, as well as for sustainable development. Extraction of oil and proteins from rapeseed has a significant cost, in term of energy and solvent uses, and finally affects the ultimate quality of the products (protein digestibility. In order to quantitatively extract seed reserves under mild conditions, it will be necessary to limit the amount of energy needed, and avoid any use of solvents. Ideally, seeds should be processed in a bio refinery. In this paper, we will describe how oilseeds store their reserves, and roadblocks for improving actual oilseed extraction processes. A continuum of research projects aimed at answering targeted questions will be presented, with selected

  7. Isolation and identification of a bacterium from marine shrimp digestive tract: A new degrader of starch and protein

    Li, Jiqiu; Tan, Beiping; Mai, Kangsen

    2011-09-01

    It is a practical approach to select candidate probiotic bacterial stains on the basis of their special traits. Production of digestive enzyme was used as a trait to select a candidate probiotic bacterial strain in this study. In order to select a bacterium with the ability to degrade both starch and protein, an ideal bacterial strain STE was isolated from marine shrimp ( Litopenaeus vannamei) intestines by using multiple selective media. The selected isolate STE was identified on the basis of its morphological, physiological, and biochemical characteristics as well as molecular analyses. Results of degradation experiments confirmed the ability of the selected isolate to degrade both starch and casein. The isolate STE was aerobic, Gram-negative, rod-shaped, motile and non-spore-forming, and had catalase and oxidase activities but no glucose fermentation activity. Among the tested carbon/nitrogen sources, only Tween40, alanyl-glycine, aspartyl-glycine, and glycyl-l-glutamic acid were utilized by the isolate STE. Results of homology comparison analyses of the 16S rDNA sequences showed that the isolate STE had a high similarity to several Pseudoalteromonas species and, in the phylogenetic tree, grouped with P. ruthenica with maximum bootstrap support (100%). In conclusion, the isolate STE was characterized as a novel strain belonging to the genus Pseudoalteromonas. This study provides a further example of a probiotic bacterial strain with specific characteristics isolated from the host gastrointestinal tract.

  8. Phytic acid, in vitro protein digestibility, dietary fiber, and minerals of pulses as influenced by processing methods.

    Chitra, U; Singh, U; Rao, P V

    1996-06-01

    The objective of this project was to determine the effect of various types of processing on selected nutrition related parameters of commonly consumed Indian pulses and soybean. Germination reduced the phytic acid content of chickpea and pigeonpea seeds by over 60%, and that of mung bean, urd bean, and soybean by about 40%. Fermentation reduced phytic acid contents by 26-39% in all these legumes with the exception of pigeonpea in which it was reduced by more than 50%. Autoclaving and roasting were more effective in reducing phytic acid in chickpea and pigeonpea than in urd bean, mung bean, and soybean. Germination and fermentation greatly increased the in vitro protein digestibility (IVPD). IVPD was only slightly increased by roasting and autoclaving of all legumes. Germination and fermentation also remarkably decreased the total dietary fiber (TDF) in all legumes. Autoclaving and roasting resulted in slight increases in TDF values. All the processing treatments had little effect on calcium, magnesium and iron contents. PMID:8983057

  9. Development and Optimization of a Flocculation Procedure for Improved Solid-Liquid Separation of Digested Biomass

    Patton, Caroline; Lischeske, James J.; Sievers, David A.

    2015-11-03

    One viable treatment method for conversion of lignocellulosic biomass to biofuels begins with saccharification (thermochemical pretreatment and enzymatic hydrolysis), followed by fermentation or catalytic upgrading to fuels such as ethanol, butanol, or other hydrocarbons. The post-hydrolysis slurry is typically 4-8 percent insoluble solids, predominantly consisting of lignin. Suspended solids are known to inhibit fermentation as well as poison catalysts and obstruct flow in catalyst beds. Thus a solid-liquid separation following enzymatic hydrolysis would be highly favorable for process economics, however the material is not easily separated by filtration or gravimetric methods. Use of a polyacrylamide flocculant to bind the suspended particles in a corn stover hydrolyzate slurry into larger flocs (1-2mm diameter) has been found to be extremely helpful in improving separation. Recent and ongoing research on novel pretreatment methods yields hydrolyzate material with diverse characteristics. Therefore, we need a thorough understanding of rapid and successful flocculation design in order to quickly achieve process design goals. In this study potential indicators of flocculation performance were investigated in order to develop a rapid analysis method for flocculation procedure in the context of a novel hydrolyzate material. Flocculation conditions were optimized on flocculant type and loading, pH, and mixing time. Filtration flux of the hydrolyzate slurry was improved 170-fold using a cationic polyacrylamide flocculant with a dosing of approximately 22 mg flocculant/g insoluble solids at an approximate pH of 3. With cake washing, sugar recovery exceeded 90 percent with asymptotic yield at 15 L wash water/kg insoluble solids.

  10. Protein-carbohydrate supplements improve muscle protein balance in muscular dystrophy patients after endurance exercise

    Andersen, Grete; Ørngreen, Mette C; Preisler, Nicolai;

    2015-01-01

    In healthy individuals, postexercise protein supplementation increases muscle protein anabolism. In patients with muscular dystrophies, aerobic exercise improves muscle function, but the effect of exercise on muscle protein balance is unknown. Therefore, we investigated 1) muscle protein balance...... before, during, and after exercise and 2) the effect of postexercise protein-carbohydrate supplementation on muscle protein balance in patients with muscular dystrophies. In 17 patients [7 women and 10 men, aged 33 ± 11 yr (18-52), body mass index: 22 ± 3 kg/m(2) (16-26)] and 8 healthy matched controls......-carbohydrate supplementation. In patients, muscle protein breakdown increased in the recovery period (11 ± 1 μmol phenylalanine/min) vs. rest (8 ± 1 μmol phenylalanine/min, P = 0.02), enhancing net muscle protein loss. In contrast, postexercise protein-carbohydrate supplementation reduced protein breakdown, abolished net...

  11. Increased temperature in the thermophilic stage in temperature phased anaerobic digestion (TPAD) improves degradability of waste activated sludge.

    Ge, Huoqing; Jensen, Paul D; Batstone, Damien J

    2011-03-15

    Two-stage temperature phased anaerobic digestion (TPAD) is an increasingly popular method to improve stabilisation of sewage waste activated sludge, which normally has inherently poor and slow degradation. However, there has been limited systematic analysis of the impact of the initial thermophilic stage (temperature, pH and retention time) on performance in the main mesophilic stage. In this study, we demonstrate a novel two-stage batch test method for TPAD processes, and use it to optimize operating conditions of the thermophilic stage in terms of degradation extent and methane production. The method determines overall degradability and apparent hydrolysis coefficient in both stages. The overall process was more effective with short pre-treatment retention times (1-2 days) and neutral pH compared to longer retention time (4 days) and low pH (4-5). Degradabilities and apparent hydrolysis coefficients were 0.3-0.5 (fraction degradable) and 0.1-0.4d(-1), respectively, with a margin of error in each measurement of approximately 20% relative (95% confidence). Pre-treatment temperature had a strong impact on the whole process, increasing overall degradability from 0.3 to 0.5 as temperature increased from 50 to 65 °C, with apparent hydrolysis coefficient increasing from 0.1 to 0.4d(-1). PMID:21277081

  12. Effects of digestible protein to energy ratios on growth and carcass chemical composition of siamese fighting fish (Betta splendens

    Marcos Vinicius Antunes de Lemos

    2014-02-01

    Full Text Available The expansion in the market of ornamental fish depends on the intensification of production systems and the generation of appropriate technologies. Therefore, it is necessary to know the nutritional requirements of each species for the formulation of nutritionally balanced diets. A 30-day feeding trial was undertaken to evaluate the effects of different dietary digestible protein to energy ratio in diets for Betta splendens fingerlings. Fifty-six all-male B. splendens with 1.03 ± 0.11 g average weight were randomly stocked into 56 1L-aquaria in a completely randomized design with a 2 x 4 factorial arrangement, comprising eight treatments and seven replication. Each fish was considered an experimental unit. Diets were formulated to contain 28.0, 35.0, 42.0 and 49.0% DP and 3,600 and 3,200 kcal/kg DE. The growth parameters evaluated in this trial were weight gain (WG, feed intake (FI, feed conversion ratio (FCR, protein efficiency ratio (PER and specific growth rate (SGR. No difference (P > 0.05 was observed for WG, FCR and SGR. However, a higher FI was observed for fish fed diets containing 42.0% DP (P < 0.05. A positive effect of DP and DE on PER was observed in this study. Generally, according to the increase of DE levels, a reduction on PER was observed. Based on this experimental condition, we recommend the use of 28.0% DP and 3,200 kcal/kg DE in diets for B. splendens.

  13. Anaerobic digestion of agricultural wastes

    Hobson, P.N.

    1984-01-01

    Farm digesters can operate satisfactorily and have a useful role on the farm. Gas production from the farm digester treating animal slurries could be boosted by adding silage liquid, old potatoes, waste cabbages and other crop wastes to the slurry, although the energy economics of maceration have not been calculated. Pollution control and types of digester are discussed. Uses of digested slurry other than for fertilizers are being tested - as protein supplement to farm animal feeds, silage making, hydroponics, fish farming and growing of worms on algae. Overall, digestion could be a contributor to power requirements especially in countries with high all year round crop production.

  14. Seed protein improvement in cereals and grain legumes

    Based upon the recommendations of a panel of experts in 1968, the Joint FAO/IAEA Division of Atomic Energy in Food and Agriculture established an international programme to improve the protein content and quality in seed crops of importance to developing countries. Reports of previous meetings held under this programme have been published by the IAEA. The meeting on Seed Protein Improvement in Cereals and Grain Legumes, held in September 1978, marked the formal end of the FAO/IAEA/GSF Co-ordinated Research Programme on Seed Protein Improvement. It reviewed the progress achieved. Volume I covers 27 papers. Following a review of the world protein and nutritional situation, the contributions are grouped under the main headings of the need for and use of variability in protein characteristics; genetics, biochemistry and physiology of seed storage proteins; analytical and nutritional techniques; and coordinated research programmes under a joint FAO/IAEA/GSF programme on grain protein improvement. Individual papers of direct relevance are cited as separate entries in INIS

  15. Polyacrylamide gel miniaturization improves protein visualization and autoradiographic detection

    Polyacrylamide gels shrink to one-quarter of their original area when soaked in a 50% (w/v) solution of polyethylene glycol. Gel miniaturization improves the contrast of protein bands, with four valuable consequences. (i) A 5- to 10-fold increase in sensitivity for Coomassie blue is observed. (ii) Gels are more durable; i.e., they resist tearing when wet and they do not crack during drying under vacuum. (iii) Shrunken gels give sharper photographic images and provide better interlane protein band comparisons. (iv) Condensed protein bands lead to an increased sensitivity for detecting low-abundance, radioactively-labeled proteins by fluorography

  16. Improvement of protein quality in grain legumes. An overview on mutational improvement of protein quality in pigeon pea

    Grain legumes provide an essential part of the diet in developing countries in terms of protein. Besides increasing production also improving the grain quality would be an important objective. The paper discusses the methodology for protein improvement in seeds of pigeon pea. Variety Hy-2 was irradiated with 20, 25, 30 and 35 Kr of gamma radiation and the M2 population was screened for total sulfur content

  17. potentially pathogenic gastro-intestinal microorganisms (ID 1030, 2956, 2958, 2961, 2963, 2966, 2970), improved lactose digestion (ID 1030, 2956, 2958, 2961, 2963, 2966, 2970), “intestinal flora/digestive health” (ID 4231), defence against vaginal pathogens (ID 2950, 2957, 2967) and increasing IL-10

    Tetens, Inge

    and reduction of gastro-intestinal discomfort, decreasing potentially pathogenic gastro-intestinal microorganisms, improved lactose digestion, “intestinal flora/digestive health”, defence against vaginal pathogens and increasing IL-10 production and/or enhancing the activity of natural killer cells...

  18. Effects of diets differing in protein source and technical treatment on digestibility, performance and visceral and biochemical parameters of fattening pigs.

    Liermann, Wendy; Berk, Andreas; Böschen, Verena; Dänicke, Sven

    2016-06-01

    The aim of the experiment on 100 cross-bred barrows was to compare commercial diets for fattening pigs based on either soya bean meal (SBM) imported from non-European countries with diets based on a mixture of locally produced rape seed meal, distillers' dried grains with solubles and soya beans as main protein sources. In addition, these both types of diets were processed by two different technical feed treatments, i.e. coarse grinding without hydrothermal treatment or fine grinding and pelleting. With only few exceptions, nutrients of the diet without SBM were more digestible (p < 0.05) resulting in a higher metabolisable energy (ME) content. Fine grinding and pelleting increased also the ME content and the nutrient digestibility with the exception of crude fibre. Higher feed intake of animals that fed diets without SBM (p < 0.01) resulted in higher average daily gain (p < 0.01). However feeding this diet, the higher digestibility was not reflected in a decreased feed-to-gain ratio (FGR), but fine grinding and pelleting reduced FGR (p < 0.001). A higher pH value and a lower DM content of caecal chymus were detected in animals that received coarsely ground feed (p < 0.05). Animals that fed finely ground and pelleted feed had higher slaughter and relative liver weights and higher blood cholesterol concentrations (p = 0.040). The urea concentrations of blood were lower (p = 0.019) after feeding diets without SBM. In conclusion, SBM imported from non-European countries can be replaced by alternative local protein sources without compromising digestibility or performances of animals. Although fine grinding and thermal treatment particularly seemed to be advantageous for digestibility and performance, the possible risk of development of stomach lesions should be considered. PMID:27032030

  19. Effect of Carbohydrate Sources and Levels of Cotton Seed Meal in Concentrate on Feed Intake, Nutrient Digestibility, Rumen Fermentation and Microbial Protein Synthesis in Young Dairy Bulls

    Wanapat, M.; Anantasook, N.; Rowlinson, P.; Pilajun, R.; Gunun, P.

    2013-01-01

    The objective of this study was to investigate the effect of levels of cottonseed meal with various carbohydrate sources in concentrate on feed intake, nutrient digestibility, rumen fermentation and microbial protein synthesis in dairy bulls. Four, 6 months old dairy bulls were randomly assigned to receive four dietary treatments according to a 2×2 factorial arrangement in a 4×4 Latin square design. Factor A was carbohydrate source; cassava chip (CC) and cassava chip+rice bran in the ratio of...

  20. Apparent digestibility of dry matter, protein and energy regarding fish meal, poultry by-product meal and quinua for Nile tilapia, Oreochromis niloticus

    Mariana C. Gutiérrez-Espinosa; Martha I. Yossa-Perdomo; Walter Vásquez-Torres

    2011-01-01

    The purpose of this study was to determine protein (ADCp) and energy (ADCe) apparent digestibility coefficients (ADC) for fish meal (FM), poultry by-product meal (PBM) and quinoa flour (Chenopodium quinoa) (QF) used in feeding Nile tilapia (Oreochromis niloticus). The indirect method with a chromium oxide marker was used to estimate the aforementioned ADC; faeces were collected by the modified Guelph system. Tilapias having an average 130 g weight were fed on an experimental diet consisting o...

  1. Influence of Processing on Dietary Fiber, Tannin and <i>in Vitro</i> Protein Digestibility of Pearl Millet

    Florence Suma Pushparaj; Asna Urooj

    2011-01-01

    From the nutritional point of view, data on dietary fiber content, tannin and in vitro protein digestibility of processed millet is of importance, because millets are never eaten raw. Effects of commonly used traditional methods on dietary fiber, tannin content and %IVPD of two locally available pearl millet varieties (Kalukombu and Maharashtra Rabi Bajra) were investigated. The millet was subjected to various processing methods like milling (whole flour, semi refined flour and bran rich frac...

  2. Improved microwave-assisted wet digestion procedures for accurate Se determination in fish and shellfish by flow injection-hydride generation-atomic absorption spectrometry

    Accurate determination of Se in biological samples, especially fish and shellfish, by hydride generation techniques has generally proven troublesome owing to the presence of organoselenium that cannot readily converted into inorganic selenium under usual oxidising conditions. Further improvements in the oxidation procedures are needed so as to obtain accurate concentration values when this type of samples is analyzed. Microwave-assisted wet digestion (MAWD) procedures of seafood based on HNO3 or the mixture HNO3/H2O2 and further thermal reduction of the Se(VI) formed to Se(IV) were evaluated. These procedures were as follows: (I) without H2O2 and without heating to dryness; (II) without H2O2 and with heating to dryness; (III) with H2O2 and without heating to dryness; (IV) with H2O2 and with heating to dryness. In general, low recoveries of selenium are obtained for several marine species (e.g., crustaceans and cephalopods), which may be ascribed to the presence of Se forms mainly associated with nonpolar proteins and lipids. Post-digestion UV irradiation proved very efficient since not only complete organoselenium decomposition was achieved but also the final step required for prereduction of Se(VI) into Se(IV) (i.e. heating at 90 deg. C for 30 min in 6 M HCl) could be avoided. With the MAWD/UV procedure, the use of strong oxidising agents (persuphate, etc.) or acids (e.g. perchloric acid) which are typically applied prior to Se determination by hydride generation techniques is overcome, and as a result, sample pre-treatment is significantly simplified. The method was successfully validated against CRM DOLT-2 (dogfish liver), CRM DORM-2 (dogfish muscle) and CRM TORT-2 (lobster hepatopancreas). Automated ultrasonic slurry sampling with electrothermal atomic absorption spectrometry was also applied for comparison. Total Se contents in ten seafood samples were established. Se levels ranged from 0.7 to 2.9 μg g-1

  3. Study of methods for the improvement of the anaerobic digestion of lipids and long chain fatty acids

    Affes Salah, Rim

    2013-01-01

    Anaerobic digestion is a biochemical process that transforms diverse categories of biomass feedstock to renewable energy, in the form of methane, and contributes to resources conservation and greenhouse gases emission mitigation. Lipid-rich waste and wastewaters have a high energy potential, however efficient methane recovery with conventional anaerobic digestion technology is not easy to achieve because of a wide assortment of operational problems mainly related to the accumulation of long...

  4. Improvement of microwave-assisted digestion of milk powder with diluted nitric acid using oxygen as auxiliary reagent

    Bizzi, Cezar A.; Barin, Juliano S.; Garcia, Edivaldo E.; Nóbrega, Joaquim A.; Dressler, Valderi L.; Flores, Erico M. M.

    2011-05-01

    The feasibility of using diluted HNO 3 solutions under oxygen pressure for decomposition of whole and non-fat milk powders and whey powder samples has been evaluated. Digestion efficiency was evaluated by determining the carbon content in solution (digests) and the determination of Ca, Cd, Cu, Fe, K, Mg, Mn, Mo, Na, Pb and Zn was performed by inductively coupled plasma optical emission spectrometry and Hg by chemical vapor generation coupled to inductively coupled plasma mass spectrometry. Samples (up to 500 mg) were digested using HNO 3 solutions (1 to 14 mol L - 1 ) and the effect of oxygen pressure was evaluated between 2.5 and 20 bar. It was possible to perform the digestion of 500 mg of milk powder using 2 mol L - 1 HNO 3 with oxygen pressure ranging from 7.5 to 20 bar with resultant carbon content in digests lower than 1700 mg L - 1 . Using optimized conditions, less than 0.86 mL of concentrated nitric acid (14 mol L - 1 ) was enough to digest 500 mg of sample. The accuracy was evaluated by determination of metal concentrations in certified reference materials, which presented an agreement better than 95% (Student's t test, P < 0.05) for all the analytes.

  5. Improvement of protein structure comparison using a structural alphabet.

    Joseph, Agnel Praveen; Srinivasan, N; de Brevern, Alexandre G

    2011-09-01

    The three dimensional structure of a protein provides major insights into its function. Protein structure comparison has implications in functional and evolutionary studies. A structural alphabet (SA) is a library of local protein structure prototypes that can abstract every part of protein main chain conformation. Protein Blocks (PBs) is a widely used SA, composed of 16 prototypes, each representing a pentapeptide backbone conformation defined in terms of dihedral angles. Through this description, the 3D structural information can be translated into a 1D sequence of PBs. In a previous study, we have used this approach to compare protein structures encoded in terms of PBs. A classical sequence alignment procedure based on dynamic programming was used, with a dedicated PB Substitution Matrix (SM). PB-based pairwise structural alignment method gave an excellent performance, when compared to other established methods for mining. In this study, we have (i) refined the SMs and (ii) improved the Protein Block Alignment methodology (named as iPBA). The SM was normalized in regards to sequence and structural similarity. Alignment of protein structures often involves similar structural regions separated by dissimilar stretches. A dynamic programming algorithm that weighs these local similar stretches has been designed. Amino acid substitutions scores were also coupled linearly with the PB substitutions. iPBA improves (i) the mining efficiency rate by 6.8% and (ii) more than 82% of the alignments have a better quality. A higher efficiency in aligning multi-domain proteins could be also demonstrated. The quality of alignment is better than DALI and MUSTANG in 81.3% of the cases. Thus our study has resulted in an impressive improvement in the quality of protein structural alignment. PMID:21569819

  6. Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation

    Wang Yong

    2011-10-01

    Full Text Available Abstract Background With the development of genome-sequencing technologies, protein sequences are readily obtained by translating the measured mRNAs. Therefore predicting protein-protein interactions from the sequences is of great demand. The reason lies in the fact that identifying protein-protein interactions is becoming a bottleneck for eventually understanding the functions of proteins, especially for those organisms barely characterized. Although a few methods have been proposed, the converse problem, if the features used extract sufficient and unbiased information from protein sequences, is almost untouched. Results In this study, we interrogate this problem theoretically by an optimization scheme. Motivated by the theoretical investigation, we find novel encoding methods for both protein sequences and protein pairs. Our new methods exploit sufficiently the information of protein sequences and reduce artificial bias and computational cost. Thus, it significantly outperforms the available methods regarding sensitivity, specificity, precision, and recall with cross-validation evaluation and reaches ~80% and ~90% accuracy in Escherichia coli and Saccharomyces cerevisiae respectively. Our findings here hold important implication for other sequence-based prediction tasks because representation of biological sequence is always the first step in computational biology. Conclusions By considering the converse problem, we propose new representation methods for both protein sequences and protein pairs. The results show that our method significantly improves the accuracy of protein-protein interaction predictions.

  7. Development, standardization and validation of nuclear based technologies for estimating microbial protein supply in ruminant livestock for improving productivity

    The primary constraint to livestock production in developing countries is the scarcity and fluctuating quantity and quality of the year-round feed supply. These countries experience serious shortages of animal feeds and fodders of the conventional type. Natural forages are very variable both in quality and quantity, conventional agro-industrial by-products are scarce and vary seasonal, and grains are required almost exclusively for human consumption. The small farmers in developing countries have limited resources available to them for feeding their ruminant livestock. Poor nutrition results in low rates of reproduction and production as well as increased susceptibility to disease and mortality. Providing adequate good-quality feed to livestock to raise and maintain their productivity is a major challenge to agricultural scientists and policy makers all over the world. Recent advances in ration balancing include manipulation of feed to increase the quantity and quality of protein and energy delivered to the small intestine. Selection of feeds based on high efficiency of microbial protein synthesis in the rumen along with the high dry matter digestibility, and development of feeding strategies based on high efficiency as well as high microbial protein synthesis in the rumen will lead to higher supply of protein post-ruminally. The strategy for improving production has therefore been to maximize the efficiency of utilization of available feed resources in the rumen by providing optimum conditions for microbial growth and thereby supplementing dietary nutrients to complement and balance the products of rumen digestion to the animal's requirement

  8. Legume proteins, their nutritional improvement and screening techniques

    In assessing the nutritional limitation of legume proteins it is essential to consider both sulphur amino acids, methionine and cysteine. The possibility of using total seed sulphur as a criteria for screening for improved protein quality is discussed. In some species when relatively large amounts of S-methyl-cysteine are present, total sulphur determinations would be invalid unless that amino acid were extracted with ethanol before the sulphur determination. Methods for sulphur determination are discussed and evaluated. (author)

  9. Improving lactose digestion and symptoms of lactose intolerance with a novel galacto-oligosaccharide (RP-G28): a randomized, double-blind clinical trial

    Savaiano, Dennis; Ritter, Andrew J; Klaenhammer, Todd R.; James, Gareth M.; Longcore, Amy T; Chandler, Justin R; Walker, W. Allan; Foyt, Howard L

    2013-01-01

    Background Lactose intolerance (LI) is a common medical problem with limited treatment options. The primary symptoms are abdominal pain, diarrhea, bloating, flatulence, and cramping. Limiting dairy foods to reduce symptoms contributes to low calcium intake and the risk for chronic disease. Adaptation of the colon bacteria to effectively metabolize lactose is a novel and potentially useful approach to improve lactose digestion and tolerance. RP-G28 is novel galacto-oligosaccharide (GOS) bei...

  10. Improvement of the relative entropy based protein folding method

    2009-01-01

    The "relative entropy" has been used as a minimization function to predict the tertiary structure of a protein backbone, and good results have been obtained. However, in our previous work, the ensemble average of the contact potential was estimated by an approximate calculation. In order to improve the theoretical integrity of the relative-entropy-based method, a new theoretical calculation method of the ensemble average of the contact potential was presented in this work, which is based on the thermodynamic perturbation theory. Tests of the improved algorithm were performed on twelve small proteins. The root mean square deviations of the predicted versus the native structures from Protein Data Bank range from 0.40 to 0.60 nm. Compared with the previous approximate values, the average prediction accuracy is improved by 0.04 nm.

  11. Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics.

    Moore, Stephanie M; Hess, Stephanie M; Jorgenson, James W

    2016-04-01

    The importance of membrane proteins in biological systems is indisputable; however, their amphipathic nature makes them difficult to analyze. In this study, the most popular techniques for extraction, enrichment, solubilization, and digestion are compared, resulting in an overall improved workflow for the insoluble portion of Saccharomyces cerevisiae cell lysate. Yeast cells were successfully lysed using a French press pressure cell at 20 000 psi, and resulting proteins were fractionated prior to digestion to reduce sample complexity. The proteins were best solubilized with the addition of ionic detergent sodium deoxycholate (1%) and through the application of high-frequency sonication prior to a tryptic digestion at 37 °C. Overall, the improved membrane proteomic workflow resulted in a 26% increase in membrane protein identifications for baker's yeast. In addition, more membrane protein identifications were unique to the improved protocol. When comparing membrane proteins that were identified in the improved protocol and the standard operating procedure (176 proteins), 93% of these proteins were present in greater abundance (higher intensity) when using the improved method. PMID:26979493

  12. Thermophilic sludge digestion improves energy balance and nutrient recovery potential in full-scale municipal wastewater treatment plants.

    De Vrieze, Jo; Smet, Davey; Klok, Jacob; Colsen, Joop; Angenent, Largus T; Vlaeminck, Siegfried E

    2016-10-01

    The conventional treatment of municipal wastewater by means of activated sludge is typically energy demanding. Here, the potential benefits of: (1) the optimization of mesophilic digestion; and (2) transitioning to thermophilic sludge digestion in three wastewater treatment plants (Tilburg-Noord, Land van Cuijk and Bath) in the Netherlands is evaluated, including a full-scale trial validation in Bath. In Tilburg-Noord, thermophilic sludge digestion covered the energy requirements of the plant (102%), whereas 111% of sludge operational treatment costs could be covered in Bath. Thermophilic sludge digestion also resulted in a strong increase in nutrient release. The potential for nutrient recovery was evaluated via: (1) stripping/absorption of ammonium; (2) autotrophic removal of ammonium via partial nitritation/anammox; and (3) struvite precipitation. This research shows that optimization of sludge digestion may lead to a strong increase in energy recovery, sludge treatment costs reduction, and the potential for advanced nutrient management in full-scale sewage treatment plants. PMID:27423372

  13. Improved hybrid optimization algorithm for 3D protein structure prediction.

    Zhou, Changjun; Hou, Caixia; Wei, Xiaopeng; Zhang, Qiang

    2014-07-01

    A new improved hybrid optimization algorithm - PGATS algorithm, which is based on toy off-lattice model, is presented for dealing with three-dimensional protein structure prediction problems. The algorithm combines the particle swarm optimization (PSO), genetic algorithm (GA), and tabu search (TS) algorithms. Otherwise, we also take some different improved strategies. The factor of stochastic disturbance is joined in the particle swarm optimization to improve the search ability; the operations of crossover and mutation that are in the genetic algorithm are changed to a kind of random liner method; at last tabu search algorithm is improved by appending a mutation operator. Through the combination of a variety of strategies and algorithms, the protein structure prediction (PSP) in a 3D off-lattice model is achieved. The PSP problem is an NP-hard problem, but the problem can be attributed to a global optimization problem of multi-extremum and multi-parameters. This is the theoretical principle of the hybrid optimization algorithm that is proposed in this paper. The algorithm combines local search and global search, which overcomes the shortcoming of a single algorithm, giving full play to the advantage of each algorithm. In the current universal standard sequences, Fibonacci sequences and real protein sequences are certified. Experiments show that the proposed new method outperforms single algorithms on the accuracy of calculating the protein sequence energy value, which is proved to be an effective way to predict the structure of proteins. PMID:25069136

  14. Prolonged ingestion of prehydrolyzed whey protein induces little or no change in digestive enzymes, but decreases glutaminase activity in exercising rats.

    Nery-Diez, Ana Cláudia C; Carvalho, Iara R; Amaya-Farfán, Jaime; Abecia-Soria, Maria Inés; Miyasaka, Célio K; Ferreira, Clécio da S

    2010-08-01

    Because consumption of whey protein hydrolysates is on the increase, the possibility that prolonged ingestion of whey protein hydrolysates affect the digestive system of mammals has prompted us to evaluate the enzymatic activities of pepsin, leucine-aminopeptidase, chymotrypsin, trypsin, and glutaminase in male Wistar rats fed diets containing either a commercial whey isolate or a whey protein hydrolysate with medium degree of hydrolysis and to compare the results with those produced by physical training (sedentary, sedentary-exhausted, trained, and trained-exhausted) in the treadmill for 4 weeks. The enzymatic activities were determined by classical procedures in all groups. No effect due to the form of the whey protein in the diet was seen in the activities of pepsin, trypsin, chymotrypsin, and leucine-aminopeptidase. Training tended to increase the activity of glutaminase, but exhaustion promoted a decrease in the trained animals, and consumption of the hydrolysate decreased it even further. The results are consistent with the conclusion that chronic consumption of a whey protein hydrolysate brings little or no modification of the proteolytic digestive system and that the lowering of glutaminase activity may be associated with an antistress effect, counteracting the effect induced by training in the rat. PMID:20482282

  15. CNNcon: improved protein contact maps prediction using cascaded neural networks.

    Wang Ding

    Full Text Available BACKGROUNDS: Despite continuing progress in X-ray crystallography and high-field NMR spectroscopy for determination of three-dimensional protein structures, the number of unsolved and newly discovered sequences grows much faster than that of determined structures. Protein modeling methods can possibly bridge this huge sequence-structure gap with the development of computational science. A grand challenging problem is to predict three-dimensional protein structure from its primary structure (residues sequence alone. However, predicting residue contact maps is a crucial and promising intermediate step towards final three-dimensional structure prediction. Better predictions of local and non-local contacts between residues can transform protein sequence alignment to structure alignment, which can finally improve template based three-dimensional protein structure predictors greatly. METHODS: CNNcon, an improved multiple neural networks based contact map predictor using six sub-networks and one final cascade-network, was developed in this paper. Both the sub-networks and the final cascade-network were trained and tested with their corresponding data sets. While for testing, the target protein was first coded and then input to its corresponding sub-networks for prediction. After that, the intermediate results were input to the cascade-network to finish the final prediction. RESULTS: The CNNcon can accurately predict 58.86% in average of contacts at a distance cutoff of 8 Å for proteins with lengths ranging from 51 to 450. The comparison results show that the present method performs better than the compared state-of-the-art predictors. Particularly, the prediction accuracy keeps steady with the increase of protein sequence length. It indicates that the CNNcon overcomes the thin density problem, with which other current predictors have trouble. This advantage makes the method valuable to the prediction of long length proteins. As a result, the effective

  16. The Effect of Supplementation Urea and Sulfur in Mixed Cassava Waste Fermented and Soyabean Cake Waste on Digestibility of Protein and Blood Urea Male Sheep

    M Bata

    1999-05-01

    Full Text Available Eighteen local male sheep were divided into 3 groups I,II and III based on the body weight 18.55±1.27, 15.79±0.67 and 13.14±1.33 kg respectively. Two level urea (2 and 3% and three levels Sulfur (0.02 and 0.3% as treatment, so pattern factorial 2x3 with Randomized Block Design used this experiment. All of the treatment get a same basal feed namely land-grass and concentrate with dry matter ratio 70:30. The total intake of dry matter was 4 % of body weight. The concentrate consist of cassava waste fermented and soyabean cake waste with dry matter ratio 77.50 : 22.50. Supplementation of urea and sulfur shown not significant interaction, but supplementation urea had effect high significantly (P<0.01 on digestibility of protein and sulfur only had effect significant (P<0.05 on blood urea. These result had indication that enriched urea in the diet could increase protein digestibility and sulfur level 0.2% could prevent NH3 absorption from rumen. (Animal Production 1(2: 75-81 (1999Key Words: cassava waste, soyabean cake waste, fermentation, digestibility, urea blood.

  17. 钙调素-人胰岛素原融合体的酶切加工%ENZYMATIC DIGESTION OF CALMODULIN-PROINSULIN FUSION PROTEIN

    王学祥; 井健

    2011-01-01

    A fusion protein composed of human proinsuiin mutant and calmodulin was prepared, then digested with PRESCI protease. Digested product includes calmodulin and human proinsulin mutant. Human proinsulin mutant was purified.%通过基因工程方法将人胰岛素原突变体偶联钙调索形成融合态重组蛋白质,在该重组蛋白质中设计具有PRESCI蛋白酶酶切位点.制备PRESCI蛋白酶并对钙调素-人胰岛素原突变体重组蛋白质进行酶切加工.研究表明,该重组融合蛋白质可被有效切割,通过蛋白质纯化手段能够有效地将切割后的钙调素与人胰岛素原突变体进行纯化.

  18. Effects of different sampling intervals on apparent protein and energy digestibility of common feed ingredients by juvenile oscar fish (Astronotus ocellatus - doi: 10.4025/actascianimsci.v34i2.10541

    João Batista Kochenborger Fernandes

    2012-03-01

    Full Text Available This study evaluated the apparent protein and energy digestibility of common feed ingredients (soybean meal, fish meal, wheat meal and corn by juvenile oscars using two different sampling intervals (30 min. and 12h. The 160 juvenile oscar fish tested (22.37 ± 3.06 g BW were divided into four cylindrical plastic net cages, each one placed in a 1000 L feeding tank. The experiment was completely randomized in a 2 x 4 factorial design (2 feces collection intervals and 4 feed ingredients with four replications. The statistical tests did not detect an interaction effect of sampling interval and type of ingredient on digestibility coefficients. Sampling interval did not affect protein and energy digestibility. The physical characteristics of juvenile oscar feces likely make them less susceptible to nutrient loss by leaching and can therefore be collected at longer intervals. Protein digestibility of the different ingredients was similar, showing that apparent digestibility of both animal and plant ingredients by juvenile oscars was efficient. Energy digestibility coefficients of fish meal and soybean meal were higher than those of wheat meal and corn. Carbohydrate-rich ingredients (wheat meal and corn had the worst energy digestibility coefficients and are therefore not used efficiently by juvenile oscars.

  19. Improvement of the Digestibility of Sulfated Hyaluronans by Bovine Testicular Hyaluronidase: A UV Spectroscopic and Mass Spectrometric Study

    Katharina Lemmnitzer

    2014-01-01

    Full Text Available Glycosaminoglycans (GAGs such as hyaluronan (HA and chondroitin sulfate (CS are important, natural polysaccharides which occur in biological (connective tissues and have various biotechnological and medical applications. Additionally, there is increasing evidence that chemically (oversulfated GAGs possess promising properties and are useful as implant coatings. Unfortunately, a detailed characterization of these GAGs is challenging: although mass spectrometry (MS is one of the most powerful tools to elucidate the structures of (polysaccharides, MS is not applicable to high mass polysaccharides, but characteristic oligosaccharides are needed. These oligosaccharides are normally generated by enzymatic digestion. However, chemically modified (particularly sulfated GAGs are extremely refractive to enzymatic digestion. This study focuses on the investigation of the digestibility of GAGs with different degrees of sulfation by bovine testicular hyaluronidase (BTH. It will be shown by using an adapted spectrophotometric assay that all investigated GAGs can be basically digested if the reaction conditions are carefully adjusted. However, the oligosaccharide yield correlates reciprocally with the number of sulfate residues per polymer repeating unit. Finally, matrix-laser desorption and ionization (MALDI MS will be used to study the released oligosaccharides and their sulfation patterns.

  20. Effect of exogenous cellulase enzyme on feed digestibility in lamb

    The aim of this study was to determine the effect of exogenous enzyme on digestibility and N retention in lamb. Eight lambs were randomly allocated to 2 experiment group in group comparison design trial. Experimental treatments were: 1) CTL (No enzyme) and 2 50NZ (Mixed enzyme with high cellulase at 50g/100kg.feed). The digestibility study showed that Exogenous enzyme increased (P<0.05) dry matter and crude protein digestibility of treated lamb compared to those of control. A similar trend (P=0.11) was observed for the NDF digestibility. Mean values for dry matter digestibility were 57.86 and 69.83% and for protein digestibility were 64.76 and 73.38%, for CTL and 50NZ, respectively). The N intake was similar among treatment, averaging 22.57g/head/day. Percent N retained of 50 NZ treated lambs was higher (P<.05) than those of CTL group (mean value were 47.74 and 59.07 for CTC and 50NZ, respectively). Feed efficiency or feed conversion ratio was numerically improved for enzyme-treated groups. Overall, the results of this study provide evidence that mixed cellulase enzyme can be used to improver performance of lambs as compare to non-enzyme diet.

  1. Sustainable energy development strategies in the rural Thailand: The case of the improved cooking stove and the small biogas digester

    Limmeechokchai, Bundit [Sirindhorn International Institute of Technology, Thammasat University, P.O. Box 22 Thammasat Rangsit Post Office, Pathumthani 12121 (Thailand); Chawana, Saichit [The Joint Graduate School of Energy and Environment, King Mongkut' s University of Technology Thonburi, Bangkok 10140 (Thailand)

    2007-06-15

    This paper presents the strategies to overcome barriers to the adoption of improved cooking stove (ICS) and small biogas digester (SBD) technologies in Thailand. Firstly, to obtain the appropriate strategies to implement the ICS and the SBD, a pattern of energy consumption in the residential sector is investigated. Then the potential of reduction of energy consumption and corresponding emissions by the ICS and the SBD is assessed. The identification and ranking of barriers to the adoption of the ICS and the SBD technologies are also investigated. In this study the Long-range Energy Alternatives Planning System (LEAP) model is used to assess the energy consumption and the corresponding emissions reduction. Then, the Analytic Hierarchy Process (AHP) model is used to identify and rank the barriers. Results from the LEAP model show that the cumulative total energy consumption and corresponding emissions reductions during the period 2002-2030 by the ICS are 27,887.7 ktoe and 10,041.0 thousand tonnes of CO{sub 2} equivalent, respectively. An average emissions reduction cost per tonne of CO{sub 2} equivalent per year is US$ 0.95 for a fuel wood cooking stove and US$ 0.35 for a charcoal cooking stove. Regarding the SBD, the cumulative total liquefied petroleum gas (LPG) consumption reduction and CO{sub 2} mitigation are 5780.9ktoe and 1548.8 thousand tonnes of CO{sub 2} equivalent during the period 2002-2030, respectively. Results from AHP analysis of ranking of barriers show that the three most important barriers in the adoption of the ICS are (i) high investment cost, (ii) lack of information, and (iii) lack of financial sources. For the SBD, the three most important barriers are (i) high investment cost, (ii) lack of financial sources, and (iii) lack of experts and skilled manpower. The sustainable energy triangle strategy (SETS) is implemented to overcome barriers in the adoption of the ICS. Results show that the traditional cooking stoves are successfully replaced

  2. Text mining improves prediction of protein functional sites.

    Karin M Verspoor

    Full Text Available We present an approach that integrates protein structure analysis and text mining for protein functional site prediction, called LEAP-FS (Literature Enhanced Automated Prediction of Functional Sites. The structure analysis was carried out using Dynamics Perturbation Analysis (DPA, which predicts functional sites at control points where interactions greatly perturb protein vibrations. The text mining extracts mentions of residues in the literature, and predicts that residues mentioned are functionally important. We assessed the significance of each of these methods by analyzing their performance in finding known functional sites (specifically, small-molecule binding sites and catalytic sites in about 100,000 publicly available protein structures. The DPA predictions recapitulated many of the functional site annotations and preferentially recovered binding sites annotated as biologically relevant vs. those annotated as potentially spurious. The text-based predictions were also substantially supported by the functional site annotations: compared to other residues, residues mentioned in text were roughly six times more likely to be found in a functional site. The overlap of predictions with annotations improved when the text-based and structure-based methods agreed. Our analysis also yielded new high-quality predictions of many functional site residues that were not catalogued in the curated data sources we inspected. We conclude that both DPA and text mining independently provide valuable high-throughput protein functional site predictions, and that integrating the two methods using LEAP-FS further improves the quality of these predictions.

  3. Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

    Webb-Robertson, Bobbie-Jo M.; Matzke, Melissa M.; Datta, Susmita; Payne, Samuel H.; Kang, Jiyun; Bramer, Lisa M.; Nicora, Carrie D.; Shukla, Anil K.; Metz, Thomas O.; Rodland, Karin D.; Smith, Richard D.; Tardiff, Mark F.; McDermott, Jason E.; Pounds, Joel G.; Waters, Katrina M.

    2014-12-01

    As the capability of mass spectrometry-based proteomics has matured, tens of thousands of peptides can be measured simultaneously, which has the benefit of offering a systems view of protein expression. However, a major challenge is that with an increase in throughput, protein quantification estimation from the native measured peptides has become a computational task. A limitation to existing computationally-driven protein quantification methods is that most ignore protein variation, such as alternate splicing of the RNA transcript and post-translational modifications or other possible proteoforms, which will affect a significant fraction of the proteome. The consequence of this assumption is that statistical inference at the protein level, and consequently downstream analyses, such as network and pathway modeling, have only limited power for biomarker discovery. Here, we describe a Bayesian model (BP-Quant) that uses statistically derived peptides signatures to identify peptides that are outside the dominant pattern, or the existence of multiple over-expressed patterns to improve relative protein abundance estimates. It is a research-driven approach that utilizes the objectives of the experiment, defined in the context of a standard statistical hypothesis, to identify a set of peptides exhibiting similar statistical behavior relating to a protein. This approach infers that changes in relative protein abundance can be used as a surrogate for changes in function, without necessarily taking into account the effect of differential post-translational modifications, processing, or splicing in altering protein function. We verify the approach using a dilution study from mouse plasma samples and demonstrate that BP-Quant achieves similar accuracy as the current state-of-the-art methods at proteoform identification with significantly better specificity. BP-Quant is available as a MatLab ® and R packages at https://github.com/PNNL-Comp-Mass-Spec/BP-Quant.

  4. Characterizing the Range of Extracellular Protein Post-Translational Modifications in a Cellulose-Degrading Bacteria Using a Multiple Proteolyic Digestion/Peptide Fragmentation Approach

    Dykstra, Andrew B [ORNL; Rodriguez, Jr., Miguel [ORNL; Raman, Babu [Dow Chemical Company, The; Cook, Kelsey [ORNL; Hettich, Robert {Bob} L [ORNL

    2013-01-01

    Post-translational modifications (PTMs) are known to play a significant role in many biological functions. The focus of this study is to characterize the post-translational modifications of the cellulosome protein complex used by the bacterium Clostridium thermocellum to better understand how this protein machine is tuned for enzymatic cellulose solubilization. To enhance comprehensive characterization, the extracellular cellulosome proteins were analyzed using multiple proteolytic digests (trypsin, Lys-C, Glu-C) and multiple fragmentation techniques (collisionally-activated dissociation, electron transfer dissociation, decision tree). As expected, peptide and protein identifications were increased by utilizing alternate proteases and fragmentation methods, in addition to the increase in protein sequence coverage. The complementarity of these experiments also allowed for a global exploration of PTMs associated with the cellulosome based upon a set of defined PTMs that included methylation, oxidation, acetylation, phosphorylation, and signal peptide cleavage. In these experiments, 85 modified peptides corresponding to 28 cellulosome proteins were identified. Many of these modifications were located in active cellulolytic or structural domains of the cellulosome proteins, suggesting a level of possible regulatory control of protein function in various cellulotyic conditions. The use of multiple enzymes and fragmentation technologies allowed for independent verification of PTMs in different experiments, thus leading to increased confidence in PTM identifications.

  5. Improving anaerobic digestion of pig manure by adding in the same reactor a stabilizing agent formulated with low-grade magnesium oxide

    Struvite precipitation and pig manure anaerobic digestion were coupled in the same reactor in order to mitigate the inhibitory effect of free ammonia and avoid precipitator costs. The stabilizing agent used to facilitate struvite precipitation was formulated with low-grade magnesium oxide by-product; an approach that would notably reduce struvite processing costs. The interaction between pig manure and stabilizing agent was analyzed in batch experiments, on a wide range of stabilizing agent additions from 5 to 100 kg m−3. The monitoring of the pH and ammonia removal during 24 h showed the high capacity of the stabilizing agent to remove ammonia; removal efficiencies above 80% were obtained from 40 kg m−3. However, a long-term anaerobic digester operation was required to assess the feasibility of the process and to ensure that the stabilizing agent does not introduce any harmful compound for the anaerobic biomass. In this vein, the addition of 5 and 30 kg m−3 of the stabilizing agent in a pig manure continuous digester resulted in a 25% (0.17 m3 kg−1) and a 40% (0.19 m3 kg−1) increase in methane production per mass of volatile solid, respectively, when compared with the reference digester (0.13 m3 kg−1). Moreover, the stability of the process during four hydraulic retention times guarantees that the stabilizing agent did not exert a negative effect on the consortium of microorganisms. Finally, scanning electron microscopy and X-ray diffraction analysis confirmed the presence of struvite as well as two precipitation mechanisms, struvite precipitation on the stabilizing agent surface and in the bulk solution. - Highlights: • Anaerobic digestion and struvite precipitation were satisfactorily coupled. • The stabilizing agent showed high ammonia removals efficiencies. • The stabilizing agent improved the methane production of a pig manure digester. • The stabilizing agent does not introduce harmful compound for the anaerobic biomass.

  6. Characterization of quinoa seed proteome combining different protein precipitation techniques: Improvement of knowledge of nonmodel plant proteomics.

    Capriotti, Anna Laura; Cavaliere, Chiara; Piovesana, Susy; Stampachiacchiere, Serena; Ventura, Salvatore; Zenezini Chiozzi, Riccardo; Laganà, Aldo

    2015-03-01

    A shotgun proteomics approach was used to characterize the quinoa seed proteome. To obtain comprehensive proteomic data from quinoa seeds three different precipitation procedures were employed: MeOH/CHCl3 /double-distilled H2 O, acetone either alone or with trichloroacetic acid; the isolated proteins were then in-solution digested and the resulting peptides were analyzed by nano-liquid chromatography coupled to tandem mass spectrometry. However, since quinoa is a nonmodel plant species, only a few protein sequences are included in the most widely known protein sequence databases. To improve the data reliability a UniProt subdatabase, containing only proteins of Caryophillales order, was used. A total of 352 proteins were identified and evaluated both from a qualitative and quantitative point of view. This combined approach is certainly useful to increase the final number of identifications, but no particular class of proteins was extracted and identified in spite of the different chemistries and the different precipitation protocols. However, with respect to the other two procedures, from the relative quantitative analysis, based on the number of spectral counts, the trichloroacetic acid/acetone protocol was the best procedure for sample handling and quantitative protein extraction. This study could pave the way to further high-throughput studies on Chenopodium Quinoa. PMID:25580831

  7. Aminoácidos digestíveis verdadeiros de alimentos protéicos determinados em galos cecectomizados True digestible amino acids of protein meals determined in cecectomized roosters

    Gladstone Brumano

    2006-12-01

    Full Text Available Objetivou-se determinar os coeficientes de digestibilidade e os valores de aminoácidos digestíveis verdadeiros de 12 alimentos protéicos para aves. Utilizou-se o método de alimentação forçada, com galos Leghorne adultos cecectomizados, em um delineamento experimental inteiramente casualizado, com 12 tratamentos, seis repetições e um galo por unidade experimental. Os alimentos estudados foram: farelo de glúten de milho 22%, farelo de glúten de milho 60%, concentrado protéico de soja, soja integral extrusada parcialmente desengordurada, farinha de carne e ossos 36%, farinha de carne e ossos 45%, farinha de peixe, farinha de vísceras de aves de alto teor de gordura, farinha de penas, plasma sangüíneo 70%, plasma sangüíneo 78% e hemácias. Os valores médios dos coeficientes de digestibilidade verdadeira dos aminoácidos essenciais e não-essenciais, em porcentagem, foram, respectivamente, 83,32 e 87,20 para o farelo de glúten de milho 22%; 92,90 e 94,86 para o farelo de glúten de milho 60%; 91,10 e 90,19 para o concentrado protéico de soja; 88,90 e 88,91 para a soja integral extrusada parcialmente desengordurada; 88,63 e 85,94 para a farinha de carne e ossos 36%; 87,80 e 85,00 para a farinha de carne e ossos 45%; 89,39 e 87,32 para a farinha de peixe; 79,22 e 74,36 para a farinha de vísceras de aves de alto teor de gordura; 85,89 e 82,32 para a farinha de penas; 87,22 e 87,78 para o plasma sangüíneo 70%; 90,42 e 91,40 para o plasma sangüíneo 78%; e 95,25 e 94,31 para as hemácias.The true digestibility coefficients and the values of true amino acid digestibility of 12 protein meals were determined in Leghorn cecectomized roosters by the "forced feed" method. The experiment was analyzed as a complete randomized design with 12 treatments, six replicates and one rooster per experimental unit. The studied feedstuffs were as follows: corn gluten meal 22%, corn gluten meal 60%, soybean protein concentrate, partially defatted

  8. Effect of supplementation of lysine and methionine on growth performance, nutrients digestibility and serum biochemical indices for growing sika deer (Cervus Nippon) fed protein deficient diet

    Jian Huang; Tie-Tao Zhang; Bao Kun; Guang-Yu Li; Kai-Ying Wang

    2015-01-01

    This study was conducted to investigate the effect of supplementation of lysine (Lys) and methionine (Met) on growth performance, nutrients digestibility and serum biochemical indices for growing sika deer fed crude protein (CP) deficient diet. Sixteen 5-month-old growing male sika deer were randomly assigned to 4 groups receiving diets (n=4): i) CP-adequate (16.63%) diet; ii) CP-deficient (13.77%) diet with 3 g/kg Lys; iii) CP-deficient with 3 g/kg Lys and 1 g/kg Met; iv) CP-deficient diet w...

  9. Impacts of microalgae pre-treatments for improved anaerobic digestion: Thermal treatment, thermal hydrolysis, ultrasound and enzymatic hydrolysis

    Ometto, Francesco; Quiroga, Gerardo; Psenǐckǎ, Pavel; Whitton, Rachel; Jefferson, Bruce; Villa, Raffaella

    2014-01-01

    Anaerobic digestion (AD) of microalgae is primarily inhibited by the chemical composition of their cell walls containing biopolymers able to resist bacterial degradation. Adoption of pre-treatments such as thermal, thermal hydrolysis, ultrasound and enzymatic hydrolysis have the potential to remove these inhibitory compounds and enhance biogas yields by degrading the cell wall, and releasing the intracellular algogenic organic matter (AOM). This work investigated the effect of four pre-treatm...

  10. Recovery and characterization of Balanites aegyptiaca Del. kernel proteins. Effect of defatting, air classification, wet sieving and aqueous ethanol treatment on solubility, digestibility, amino acid composition and sapogenin content.

    Mohamed, A M; Wolf, W; Spiess, W E

    2000-02-01

    In order to find alternative protein sources in African regions where protein deficiency in nutrition is prevailing, solubility, in-vitro digestibility, amino acid composition and chemical score of Balanites aegyptiaca Del. kernel proteins were investigated as a function of different processing steps including defatting, air classification, wet sieving and aqueous ethanol treatment. Air classification delivered a fine fraction of 58.1% of the total protein. Applying a wet sieving process, a protein concentrate of 72.9% protein content was achieved but the recovery was very low (35.6%). However, in case of isoelectric precipitation followed by aqueous ethanol treatment both protein content (78.2%) and recovery (53.7%) were high. Data concerning the chemical score revealed, that lysine content of the defatted kernel flour amounted to 74.2% of the recommended FAO/WHO standard level. In-vitro protein digestibility was found to be higher than of legume proteins. The digestible protein of the full fat flour, defatted flour, air classified and wet sieved fine fractions and protein concentrate were 91.9, 93.7, 82.0, 86.4 and 94.2%, respectively. The sapogenin content per 100 g protein of the investigated protein preparations was significantly lower (46% to 62%) than of the initial material (oilcake). PMID:10702992

  11. A structural alphabet for local protein structures: improved prediction methods.

    Etchebest, Catherine; Benros, Cristina; Hazout, Serge; de Brevern, Alexandre G

    2005-06-01

    Three-dimensional protein structures can be described with a library of 3D fragments that define a structural alphabet. We have previously proposed such an alphabet, composed of 16 patterns of five consecutive amino acids, called Protein Blocks (PBs). These PBs have been used to describe protein backbones and to predict local structures from protein sequences. The Q16 prediction rate reaches 40.7% with an optimization procedure. This article examines two aspects of PBs. First, we determine the effect of the enlargement of databanks on their definition. The results show that the geometrical features of the different PBs are preserved (local RMSD value equal to 0.41 A on average) and sequence-structure specificities reinforced when databanks are enlarged. Second, we improve the methods for optimizing PB predictions from sequences, revisiting the optimization procedure and exploring different local prediction strategies. Use of a statistical optimization procedure for the sequence-local structure relation improves prediction accuracy by 8% (Q16 = 48.7%). Better recognition of repetitive structures occurs without losing the prediction efficiency of the other local folds. Adding secondary structure prediction improved the accuracy of Q16 by only 1%. An entropy index (Neq), strongly related to the RMSD value of the difference between predicted PBs and true local structures, is proposed to estimate prediction quality. The Neq is linearly correlated with the Q16 prediction rate distributions, computed for a large set of proteins. An "expected" prediction rate QE16 is deduced with a mean error of 5%. PMID:15822101

  12. Low protein degr adability and precision protein feeding improve nitrogen efficiency of dairy cows

    Cutullic, Erwan; Delaby, Luc; Edouard, Nadège; Faverdin, Philippe

    2014-01-01

    The low efficiency of nitrogen (N) intake in dairy cows can increase feed costs and ammonia emissions. At the rumen level, decreasing degradable N to improve the urea reuse in microbial protein synthesis, can increase N efficiency (Neff=Nmilk/Nintake). Moreover, at the animal level, the metabolisable protein (MP) efficiency varies greatly between dairy cows. Applying precision feeding, with adjustment of the diet according to individual observations, could increase this MPeff. The...

  13. Seed protein improvement in wheat by mutation breeding

    Several nutritional surveys conducted in different areas in Pakistan have shown the prevalence of protein-calorie malnutrition, especially among young children. However, there is no evidence of overall deficiency of protein resources in the country on a national basis. The available data are entirely inadequate to draw a definite conclusion about the extent of malnutrition in the country, and to plan a strategy for improving the diet of vulnerable groups. The common meal of the low income groups consists of Dal-Roti, which is a spiced pulse soup and pan bread. It is therefore essential to improve the protein content of the pulses and wheat in order to overcome malnutrition. The average yield per acre of pulses in Pakistan is very low, and it is particularly important to evolve high yielding, improved grain quality varieties of the popular pulses which have been hitherto largely neglected. Studies on the improvement of various local and exotic varieties of wheat (Triticum aestivum) and mung (Phaseolus aureus), through induced mutation, have yielded several high yielding and high protein mutants. These mutant lines are being further investigated for the confirmation of their variant traits. Single plant selections of mung bean made from the M2 generation on the basis of their plant type, habit of growth, maturity time, grain yield and disease resistance are under critical observation. Other pulses, e.g. Cicer arietinum, Lens esculenta and Phaseolus mungo have also been included in the programme; however the breeding work on these crops is still in the preliminary stages. (author)

  14. Dramatic Improvement of Proteomic Analysis of Zebrafish Liver Tumor by Effective Protein Extraction with Sodium Deoxycholate and Heat Denaturation

    2015-01-01

    Majority of the proteomic studies on tissue samples involve the use of gel-based approach for profiling and digestion. The laborious gel-based approach is slowly being replaced by the advancing in-solution digestion approach. However, there are still several difficulties such as difficult-to-solubilize proteins, poor proteomic analysis in complex tissue samples, and the presence of sample impurities. Henceforth, there is a great demand to formulate a highly efficient protein extraction buffer...

  15. An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology

    Jain Shobhit

    2010-11-01

    Full Text Available Abstract Background Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs. They quantify similarity between proteins based on their function using annotation systems like the Gene Ontology (GO. Proteins that interact in the cell are likely to be in similar locations or involved in similar biological processes compared to proteins that do not interact. Thus the more semantically similar the gene function annotations are among the interacting proteins, more likely the interaction is physiologically relevant. However, most semantic similarity measures used for PPI confidence assessment do not consider the unequal depth of term hierarchies in different classes of cellular location, molecular function, and biological process ontologies of GO and thus may over-or under-estimate similarity. Results We describe an improved algorithm, Topological Clustering Semantic Similarity (TCSS, to compute semantic similarity between GO terms annotated to proteins in interaction datasets. Our algorithm, considers unequal depth of biological knowledge representation in different branches of the GO graph. The central idea is to divide the GO graph into sub-graphs and score PPIs higher if participating proteins belong to the same sub-graph as compared to if they belong to different sub-graphs. Conclusions The TCSS algorithm performs better than other semantic similarity measurement techniques that we evaluated in terms of their performance on distinguishing true from false protein interactions, and correlation with gene expression and protein families. We show an average improvement of 4.6 times the F1 score over Resnik, the next best method, on our Saccharomyces cerevisiae PPI dataset and 2 times on our Homo sapiens PPI dataset using cellular component, biological process and molecular function GO annotations.

  16. Breeding for improved plant architecture and high protein yields

    It has been increasingly recognized that the problem of protein malnutrition in many developing countries is closely correlated with inadequate intake of calories. Breeding for higher grain yields, therefore, continues to be a major objective of agricultural research in these countries. It follows that studies on nutritional improvement of foodgrains must also be planned with the objective of harvesting more protein per hectare combined with high grain yields. As far as cereal crops like wheat and rice are concerned, significant advances have been made in recent years in developing high yielding cultivars, which show an improved plant type marked by resistance to lodging and a high harvest index. Experimental approaches that can be used to increase the protein content of grains in these varieties are reviewed. The position in the case of grain legumes is quite different. The foremost requirement in their case is to develop high-yielding varieties similar to those of the cereal crops and the possibilities that exist in this regard are very great. The concept of improved plant type is even more relevant for increasing their yields. The existing cultivars of these crops have been selected more for adaptation to stress conditions rather than for high yields and in this process they have acquired a bushy, spreading and indeterminate growth habit combined with late maturity. A major requirement is to reconstruct the plant type to improve the grain-straw ratio, generate response to higher plant populations per unit area, and to fit these crops into multiple and inter-cropping patterns. Using these concepts it has been possible to evolve new ideotypes and improve the yields of several species of grain legumes both through hybridization and induced mutations. Some of these results are reviewed. (author)

  17. Cry1Ie蛋白的模拟胃肠液消化稳定性及热稳定性分析%Analysis of Digestive Stability in Simulative Digestive Tract Fluid and Heat Stability of Cry1Ie Protein

    李欣竹; 耿丽丽; 高继国; 张杰

    2015-01-01

    Cry1Ie蛋白对亚洲玉米螟(Ostrinia furnacalis)具有高毒力,cry1Ie基因已经应用于转基因抗虫玉米的种质创制。为评价Cry1Ie蛋白的食用安全性,开展了Cry1Ie蛋白的消化及热稳定性研究。利用实验室已经构建的表达载体,在大肠杆菌中表达了分子量为81 kD的可溶性Cry1Ie蛋白,经过Ni-NTA亲和层析和Superdex-75分子筛层析获得纯度达91%蛋白。模拟消化液实验结果表明,Cry1Ie蛋白在模拟胃肠液中15 s内即被消化,SDS-PAGE未检测到蛋白残留。热稳定性实验中,Cry1Ie蛋白在玉米粉提取液中不稳定,100℃30 min内蛋白基本降解。对样品进行了生物活性测定发现,经模拟胃肠液消化处理和热处理后的Cry1Ie蛋白对亚洲玉米螟无杀虫活性。Cry1Ie蛋白在胃肠液系统中和热处理条件下均不稳定,并丧失了对亚洲玉米螟的杀虫活性。%Due to the high virulence to Asian corn borer(Ostrinia furnacalis)of Cry1Ie, this protein had applied into the germplasm creating of transgenic insect-resistant maize. To evaluate the food safety of Cry1Ie protein, this study carried out the digestion and heat stability assays. Using the expressing vector which the laboratory has constructed, the Cry1Ie protein(81 kD)was expressed inEscherichia coli, and the high purity protein was obtained using Ni-NTA chromatography and Superdex-75 size-exclusion chromatography. The results of artificial digestion assay showed that Cry1Ie was degraded rapidly within 15 s in simulated gastric fluid and intestinal fluid, without any peptide left in SDS-PAGE. In the heat stability assay, Cry1Ie was not stable in the extracting solution of maize meal, and most was degraded within 30 min under 100℃. In the bioassay of the Asian corn borer(Ostrinia furnacalis), it suggested that Cry1Ie lost the bio-activity after the treatment of digestion and heat. In conclusion, Cry1Ie was not stable in the gastrointestinal fliud and the

  18. Seed protein improvement in cereals and grain legumes

    Full text: This Symposium organized in co-operation with the Gesellschaft fur Strahlen- und Umweltforschung mbH (GSF), Neuherberg near Munich, Federal Republic of Germany, was the culmination of the eight year FAO/IAEA/GSF Co-ordinated Research Programme to Improve Protein Content and Quality of Crops by Nuclear Techniques The co-ordinated research programme has stimulated plant breeding in developing countries, assisted in the development of techniques for the identification and evaluation of nutritionally improved mutants and encouraged basic research on seed storage proteins. The Symposium comprised 90 scientific presentations plus equipment displays. Sixty-one scientific papers were orally presented and discussed in eight sessions. An additional 29 scientific contributions were presented as posters and were on display throughout the Symposium. One afternoon of the Symposium was devoted to examination and individual discussion of the poster displays. It was especially notable that this method of presentation and discussion of scientific results was very favourably received. Five items of scientific equipment demonstrated analytical systems in use for protein or amino acid assay in plant breeding programmes. The Symposium clearly demonstrated the reality of nutritional deficiencies in poor countries and outlined plant breeding strategies for overcoming these. Progress was reported in improving the nutritional quality of cereals (wheat, maize, rice, barley, sorghum, millet, triticale, oats), legumes (beans, peas, soybeans, field beans, chick peas, lentils, pigeon peas, cowpeas, grams, peanuts) and some other crops (cotton, buckwheat). Notable results have been achieved, but much of the work has been in progress less than 10 years, which is too short a time for the development, testing and release of commercial varieties. Chemical and nutritional assay methods, including some promising new methods were reviewed and assessed. Rapid developments in knowledge of the

  19. Ileal digestibility of amino acids in novel organic protein feedstuffs for pigs: Black soldier fly larvae meal(Hermetia illucens)

    Kortelainen, Tiina; Siljander-Rasi, Hilkka; Tuori, Mikko; Partanen, Kirsi

    2014-01-01

    Abstract The objective of this study was to determine the standardised ileal digestibility (SID) of amino acids in organically produced black soldier fly larvae (Hermeti illucens) meal in growing piglets. The use of Hermetia meal in pig feeding is not allowed for the time being, but feed legislation in the EU concerning the use of Hermetia meal for pigs is in progress. Two batches of Hermetia meal arrived from Switzerland (FiBL Research Institute of Organic Agriculture). In batch 1, fa...

  20. Personification algorithm for protein folding problem:Improvements in PERM

    HUANG Wenqi; Lü Zhipeng

    2004-01-01

    PERM is the most efficient approach for solving protein folding problem based on simple lattice model. In this article a personification explanation of PERM is proposed. A new version of PERM, population control algorithm with two main improvements is presented: one is that it is able to redefine the weight and its predicted value in PERM, and the other is that it is able to unify the calculation of weight when choosing possible branches. The improved PERM is more efficient than the previous version; specifically it can find the known lowest energy states for the four well-known difficult instances and is generally several to hundreds times faster than PERM. It is noteworthy that with the improved PERM we found new lowest energy configurations of three of the four difficult problems missed in previous papers.

  1. Characterization of Solid Digestates: Part 1, Review of Existing Indicators to Assess Solid Digestates Agricultural Use

    Téglia, C.; Trémier, A.; Martel, J.L.

    2010-01-01

    Anaerobic digestion of organic wastes is clearly encouraged by current regulations in Europe. In complement to the energy supply it represents, this biological treatment process also allows the recycling of organic matter and nutrients contained in biodegradable wastes. Indeed the digestion residue can be further promoted as soil improver or fertilizer. The sustainability of anaerobic digestion plants partly depends on the management of these digestion residues. Digestates present particular ...

  2. Chapter 11. Digestive tube

    Exploration of the digestive tube by radioactive tracers relates mainly to the functional study of certain digestion or absorption troubles. The tracer absorbed by the digestibe system was followed by counting of the stools, successive measurements of the plasma radioactivity, measurements of urinary elimination or uptake on a storage organ such as the liver in the case of vitamin B12, measurement of whole-body radioactivity for vitamin B12 and iron. The different isotopic techniques used to study intestinal absorption of lipids, proteins and aminoacids, vitamin B 12 and iron were described and their contribution to the detection of exudative enteropathies and digestive haemorrhage was shown. It was pointed out that the stomach is one of the organs most accessible to standard exploration techniques. The role of sup(99m)Tc in both the morphological exploration of stomach and the study of gastric secretion, of 51Cr and 129Cs in the study of gastric evacuation were demonstrated

  3. Effect of pectin extracted from citrus pulp on digesta characteristics and nutrient digestibility in broilers chickens

    Vanessa Karla Silva

    2013-08-01

    Full Text Available The experiment was carried out to evaluate the effects of continuous ingestion of pectin on intestinal viscosity, intestinal transit time, excreta moisture content, nutrient digestibility and energy metabolism of broilers at starter and growth phases. We used 240 one-day-old Cobb male broiler chicks, distributed in a completely randomized experimental design. Treatments consisted of four concentrations of pectin (0, 10, 30 and 50 g kg-1 with six replicates of 10 birds each. The ingestion of pectin supplied in the feed by broilers at the starter phase increased intestinal viscosity and intestinal transit time, reduced excreta moisture, improved the use of apparent metabolizable energy, nitrogen-corrected apparent metabolizable energy, coefficient of apparent metabolizability, coefficient of nitrogen-corrected apparent metabolizability, apparent digestibility coefficient of crude protein and organic matter; worsened calcium utilization and coefficients of apparent digestibility of dry matter; and did not influence the coefficients of apparent digestibility of crude fat, ash and phosphorus. Pectin ingestion during the growth phase increased intestinal viscosity and apparent digestibility coefficients of ash and organic matter, but decreased the dry matter, crude fat, crude protein and calcium. Intestinal transit time, energy metabolism and apparent digestibility coefficient of crude protein showed quadratic behavior according to pectin levels in the feed. Therefore, pectin ingestion by broilers at the starter phase increases intestinal viscosity and intestinal transit time, reduces excreta moisture and improves energy utilization, whereas at the growth phase nutrient digestibility is decreased.

  4. Approaches to improving the nutritional quality of barley seed proteins

    The poor nutritional quality of barley grain is determined by the low level of lysine in the prolamin storage proteins (hordein). These account for between 35 to 50% of the total grain nitrogen, depending on the nutritional status of the plant. There is a reduced proportion of hordein in mutant high lysine lines but these also have reduced synthesis of storage carbohydrates and hence low yields. Three strategies for improvement are discussed. Increases in the lysine content of hordein may be difficult to achieve because of the presence of complex families of structural genes. It would also be necessary to insert a large number of additional lysine residues. Two more promising approaches are to increase the level of expression of genes coding for lysine-rich globulin storage proteins and to increase the pool of free lysine by selecting mutant lines with relaxed feedback regulation of lysine synthesis. (author)

  5. Biogas production improvement and C/N control by natural clinoptilolite addition into anaerobic co-digestion of Phragmites australis, feces and kitchen waste.

    Wang, Xiaowei; Zhang, Lieyu; Xi, Beidou; Sun, Wenjun; Xia, Xunfeng; Zhu, Chaowei; He, Xiaosong; Li, Mingxiao; Yang, Tianxue; Wang, Pengfei; Zhang, Zhonglei

    2015-03-01

    Anaerobic co-digestion (A co-D) performance of Phragmites australis, feces and kitchen waste with addition of clinoptilolite (one main kind of zeolite) was investigated to evaluate the improvement of biogas/methane production and internal mechanism of nitrogen and organics control. A better biogas/methane production was observed by 10% clinoptilolite (v/v) than bentonite and diatomite, with the shortest lag phase of 0.070d(-1), the max rate of 15.89L/(kgVSday) and ultimate biogas production of 308.2L/kgVS as the modified Gompertz equation predicted. Accordingly, the content of methane in the biogas was increased from 44.10% to 65.30%. Furthermore, the clinoptilolite inhibited the acidification of digestion liquid (optimum pH 7.0-7.5) and enhanced the VFAs (acetic acid, propionic acid and butyric acid) destruction. Moreover, 10% of clinoptilolite optimally enhanced the microbial utilization of Ca(2+)/Mg(2+), controlled the C/N ratio, and improved the biogas production as well as NH3-N/NO3-N inhibition efficiency. PMID:25603527

  6. Molecular basis of processing-induced changes in protein structure in relation to intestinal digestion in yellow and green type pea (Pisum sativum L.): A molecular spectroscopic analysis.

    Yu, Gloria Qingyu; Warkentin, Tom; Niu, Zhiyuan; Khan, Nazir A; Yu, Peiqiang

    2015-12-01

    The objectives of this study were (1) to quantify the protein inherent molecular structural features of green cotyledon (CDC Striker) and yellow cotyledon (CDC Meadow) pea (Pisum sativum L.) seeds using molecular spectroscopic technique (FT/IR-ATR); (2) measure the denaturation of protein molecular makeup in the two types of pea during dry roasting (120°C for 60 min), autoclaving (120°C for 60 min) or microwaving (for 5 min); and (3) correlate the heat-induced changes in protein molecular makeup to the corresponding changes in protein digestibility determined using modified three-step in vitro procedure. Compared with yellow-type, the green-type peas had higher (Pyellow-type, the green-type peas had lower (Pyellow (r=0.81) pea-types. However, across the pea types the correlation was not significant. Principal component and hierarchical cluster analyses on the entire spectral data from the amide region (ca. 1727-1480 cm(-1)) were able to visualize and discriminate the structural difference between pea varieties and processing treatments. This study shows that the molecular spectroscopy can be used as a rapid tool to screen the protein value of raw and heat-treated peas. PMID:26188704

  7. Direct Analysis of Reversed-Phase HPTLC Separated Tryptic Protein Digests using a Liquid Microjunction Surface Sampling Probe/ESI-MS System

    Emory, Joshua F [ORNL; Walworth, Matthew J [ORNL; Van Berkel, Gary J [ORNL; Schulz, Michael [Merck Research Laboratories; Minarik, susanne [Merck Research Laboratories

    2010-01-01

    The sampling, ionization and detection of tryptic peptides separated in one-dimension on reversed phase HPTLC plates was performed using liquid microjunction surface sampling probe electrospray ionization mass spectrometry. Tryptic digests of five proteins (cytochrome c., myoglobin, beta-casein, lysozyme, and bovine serum albumin) were spotted on reversed phase HPTLC RP-8 F254s and HPTLC RP-18 F254s plates. The plates were then developed using 70/30 methanol/water with 0.1 M ammonium acetate. A dual purpose extraction/electrospray solution containing 70/30/0.1 water/methanol/formic acid was infused through the sampling probe during analysis of the developed lanes. Both full scan mass spectra and data dependent tandem mass spectra were acquired for each development lane to detect and verify the peptide distributions. Data dependent tandem mass spectra provided both protein identification and sequence coverage information. Highest sequence coverages were achieved for cytochrome c. and myoglobin (62.5% and 58.3%, respectively) on reversed phase RP-8 plates. While the tryptic peptides were separated enough for identification, the peptide bands did show some overlap with most peptides located in the lower half of the development lane. Proteins whose peptides were more separated gave higher sequence coverage. Larger proteins such as beta-casein and BSA which were spotted in lower relative amounts gave much lower sequence coverage than the smaller proteins.

  8. Production of Lupinus angustifolius protein hydrolysates with improved functional properties

    Millán, Francisco

    2005-06-01

    Full Text Available Protein hydrolysates wer e obtained from lupin flour and from the purified globulin α -conglutin, and their functional properties were studied. Hydrolysis with alcalase for 60 minutes yielded degrees of hydrolysis ranging from 4 % to 11 % for lupin flour, and from 4 % to 13% for α -conglutin. Protein solubility, oil absorption, foam capacity and stability, emulsifying activity, and emulsion stability of hydrolysates with 6% degree of hydrolysis were determined and compared with the properties of the original flour. The protein hydrolysates showed better functional properties than the original proteins. Most importantly, the solubility of the α -conglutin and L. angustifolius flour hydrolysates was increased by 43 % and 52 %, respectively. Thus, lupin seed protein hydrolysates have improved functional properties and could be used in the elaboration of a variety of products such as breads, cakes, and salad dressings.Se obtuvieron hidrolizados proteicos de la harina del altramuz y de la globulina α - conglutina purificada y se estudiaron sus propiedades funcionales. La hidrólisis con alcalasa durante 60 minutos produjo hidrolizados con grados de hidrólisis entre el 4 % y el 11 % para la harina y entre el 4 % y el 13 % para la α - conglutina. Se estudió en un hidrolizado con un 6 % de grado de hidrólisis la solubilidad proteica, absorción de aceite, capacidad y estabilidad espumante y actividad y estabilidad emulsificante. Los hidrolizados proteicos mostraron mejores propiedades funcionales que las proteínas originales. Más aún, la solubilidad de los hidrolizados de α - conglutina y la harina se incrementó en un 43 % y 52 % respectivamente. Así pues, hidrolizados de proteínas de semilla de lupino presentan mejores propiedades funcionales y podrían usarse en la elaboración de productos como pan, dulces, salsas o cremas.

  9. Technological Processes of Pretreatment of Anaerobic Digestion Improvement for Sewage Sludge%改善污泥厌氧消化性能的预处理技术

    蔺金贤; 朱南文; 袁海平; 于豹

    2013-01-01

    厌氧消化是污泥稳定化处理的主要技术之一.通过采用一定的预处理技术,破坏细胞结构,释放有机质,促进污泥的水解速率,从而改善污泥厌氧消化性能.该文综述了几种国内外目前研究较为广泛的预处理技术,主要包括热预处理法、转动球磨法、高压喷射法、超声波预处理法、酸预处理法、碱预处理法和氧化法等技术,并分别探讨了各种技术的作用原理、特点、处理效果及应用前景.%Anaerobic digestion is one of the main sludge stabilization technologies.Pretreatment processes can destroy the cell structure,increase nutrient releasing and promote the rate of hydrolysis of the sludge,thereby improving the performance of anaerobic digestion.Paper presents a review of the main sludge treatment techniques used as a pretreatment of anaerobic digestion.These processes include thermal,mechanical (such as grinding,high pressure and ultrasound),and chemical(mainly with acid,alkali or oxidant)treatments.The basic principles,characteristics,treatment efficiency and future application of these methods were discussed as well.

  10. Communication Strategies for Employment Interviews. ERIC Digest.

    Aiex, Nola Kortner

    Intended to help prepare individuals for job seeking, this digest suggests some resources to consult to help improve basic communication skills needed for the interview process. The digest reviews research on teaching interview skills in the classroom, discussing role playing, videotapes, and techniques workshops. The digest also lists practical…

  11. Methane production improvement by modulation of solid phase immersion in dry batch anaerobic digestion process: Dynamic of methanogen populations.

    André, L; Ndiaye, M; Pernier, M; Lespinard, O; Pauss, A; Lamy, E; Ribeiro, T

    2016-05-01

    Several 60L dry batch anaerobic digestion (AD) reactors were implemented with or without liquid reserve on cattle manure. The immersed part modulation of cattle manure increased the methane flow of about 13%. The quantitative real time PCR and the optimized DNA extraction were implemented and validated to characterize and quantify the methanogen dynamic in dry batch AD process. Final quantities of methanogens converged toward the same level in several inocula at the end of AD. Methanogen dynamic was shown by dominance of Methanosarcinaceae for acetotrophic methanogens and Methanobacteriales for the hydrogenotrophic methanogens. Overall, methanogens populations were stabilized in liquid phase, except Methanosaetaceae. Solid phase was colonized by Methanomicrobiales and Methanosarcinaceae populations giving a support to biofilm development. The methane increase could be explained by a raise of Methanosarcinaceae population in presence of a total contact between solid and liquid phases. Methanosarcinaceae was a bio-indicator of the methane production. PMID:26897414

  12. Microbial community structure reveals how microaeration improves fermentation during anaerobic co-digestion of brown water and food waste.

    Lim, Jun Wei; Chiam, Jun An; Wang, Jing-Yuan

    2014-11-01

    The purpose of this study was to investigate the impact of microaeration on the fermentation process during anaerobic co-digestion of brown water (BW) and food waste (FW). This was achieved by daily monitoring of reactor performance and the determination of its bacterial consortium towards the end of the study. Molecular cloning and sequencing results revealed that bacteria within phyla Firmicutes and Bacteriodetes represented the dominant phylogenetic group. As compared to anaerobic conditions, the fermentation of BW and FW under microaeration conditions gave rise to a significantly more diverse bacterial population and higher proportion of bacterial clones affiliated to the phylum Firmicutes. The acidogenic reactor was therefore able to metabolize a greater variety of substrates leading to higher hydrolysis rates as compared to the anaerobic reactor. Other than enhanced fermentation, microaeration also led to a shift in fermentation production pattern where acetic acid was metabolized for the synthesis of butyric acid. PMID:25194261

  13. The digestibility of waste activated sludges.

    Park, Chul; Abu-Orf, Mohammad M; Novak, John T

    2006-01-01

    Laboratory digestion studies using waste activated sludges (WAS) were conducted to compare the digestion performance between anaerobic and aerobic processes. Nine samples of WAS from seven wastewater treatment plants were collected and batch-digested under both anaerobic and aerobic conditions for 30 days at 25 degrees C. The cation content of wastewater (both floc and solution phases) and solution biopolymer (protein and polysaccharide) was measured before and after digestion and compared with volatile solids destruction data. The study revealed that each digestion process was associated with a distinct biopolymer fraction, which accounted for differences in volatile solids reduction under anaerobic and aerobic conditions. The anaerobic digestion data showed strong correlations between soluble protein generation, ammonium production, percent volatile solids reduction, and floc iron (Fe). These data suggest that the amount of volatile solids destroyed by anaerobic digestion depends on the Fe content of floc. In aerobic digestion, polysaccharide accumulated in solution along with calcium and magnesium. For aerobic digestion, correlations between divalent cation release and the production of inorganic nitrogen were found. This implies that divalent cation-bound biopolymer, thought to be lectin-like protein, was the primary organic fraction degraded under aerobic conditions. The results of the study show that the cation content in wastewater is an important indicator of the material that will digest under anaerobic or aerobic conditions and that some of the volatile solids will digest only under either anaerobic or aerobic conditions. PMID:16553167

  14. In vitro starch digestion correlates well with rate and extent of starch digestion in broiler chickens

    Weurding, R.E.; Veldman, R.; Veen, W.A.G.; Aar, van der P.J.; Verstegen, M.W.A.

    2001-01-01

    Current feed evaluation systems for poultry are based on digested components (fat, protein and nitrogen-free extracts). Digestible starch is the most important energy source in broiler chicken feeds and is part of the nitrogen-free extract fraction. Digestible starch may be predicted using an in vit

  15. Adaptation of digestive enzymes to dietary protein, carbohydrate and fibre levels and influence of protein and carbohydrate quality in Penaeus vannamei larvae (Crustacea, Decapoda)

    Le Moullac, Gilles; Van Wormhoudt, Alain

    1994-01-01

    L'activité des enzymes digestives (trypsine, chymotrypsine et amylase) au cours des premiers stades larvaires de Penaeus vannamei est étudiée en relation avec l'alimentation. Les microparticules à base de caséine diminuent le contenu protéique soluble et les activités enzymatiques. L'activité spécifique de la trypsine est corrélée (p

  16. Post-polymerization photografting on methacrylate-based monoliths for separation of intact proteins and protein digests with comprehensive two-dimensional liquid chromatography hyphenated with high-resolution mass spectrometry.

    Vonk, Rudy J; Wouters, Sam; Barcaru, Andrei; Vivó-Truyols, Gabriel; Eeltink, Sebastiaan; de Koning, Leo J; Schoenmakers, Peter J

    2015-05-01

    Post-polymerization photografting is a versatile tool to alter the surface chemistry of organic-based monoliths so as to obtain desired stationary phase properties. In this study, 2-acrylamido-2-methyl-1-propanesulfonic acid was grafted to a hydrophobic poly(butyl methacrylate-co-ethylene glycol dimethacrylate) monolith to create a strong cation exchange stationary phase. Both single-step and two-step photografting were addressed, and the effects of grafting conditions were assessed. An experimental design has been applied in an attempt to optimize three of the key parameters of the two-step photografting chemistry, i.e. the grafting time of the initiator, the monomer concentration and the monomer irradiation time. The photografted columns were implemented in a comprehensive two-dimensional column liquid chromatography ( (t) LC ×  (t) LC) workflow and applied for the separation of intact proteins and peptides. A baseline separation of 11 intact proteins was obtained within 20 min by implementing a gradient across a limited RP composition window in the second dimension. (t) LC ×  (t) LC with UV detection was used for the separation of cytochrome c digest, bovine serum insulin digest and a digest of a complex protein mixture. A semi-quantitative estimation of the occupation of separation space, the orthogonality, of the (t) LC ×  (t) LC system yielded 75%. The (t) LC ×  (t) LC setup was hyphenated to a high-resolution Fourier transform ion cyclotron resonance mass spectrometer instrument to identify the bovine serum insulin tryptic peptides and to demonstrate the compatibility with MS analysis. PMID:25801383

  17. Utilizing shared interacting domain patterns and Gene Ontology information to improve protein-protein interaction prediction.

    Roslan, Rosfuzah; Othman, Razib M; Shah, Zuraini A; Kasim, Shahreen; Asmuni, Hishammuddin; Taliba, Jumail; Hassan, Rohayanti; Zakaria, Zalmiyah

    2010-06-01

    Protein-protein interactions (PPIs) play a significant role in many crucial cellular operations such as metabolism, signaling and regulations. The computational methods for predicting PPIs have shown tremendous growth in recent years, but problem such as huge false positive rates has contributed to the lack of solid PPI information. We aimed at enhancing the overlap between computational predictions and experimental results in an effort to partially remove PPIs falsely predicted. The use of protein function predictor named PFP() that are based on shared interacting domain patterns is introduced in this study with the purpose of aiding the Gene Ontology Annotations (GOA). We used GOA and PFP() as agents in a filtering process to reduce false positive pairs in the computationally predicted PPI datasets. The functions predicted by PFP() were extracted from cross-species PPI data in order to assign novel functional annotations for the uncharacterized proteins and also as additional functions for those that are already characterized by the GO (Gene Ontology). The implementation of PFP() managed to increase the chances of finding matching function annotation for the first rule in the filtration process as much as 20%. To assess the capability of the proposed framework in filtering false PPIs, we applied it on the available S. cerevisiae PPIs and measured the performance in two aspects, the improvement made indicated as Signal-to-Noise Ratio (SNR) and the strength of improvement, respectively. The proposed filtering framework significantly achieved better performance than without it in both metrics. PMID:20417930

  18. Your Digestive System

    ... Here's Help White House Lunch Recipes Your Digestive System KidsHealth > For Kids > Your Digestive System Print A ... flush we were talking about! Dig That Digestive System You can help your digestive system by drinking ...

  19. Long time storage (archiving of peptide, protein and tryptic digest samples on disposable nano-coated polymer targets for MALDI MS

    Stefan Bugovsky

    2015-09-01

    Full Text Available Archiving of biological specimens is important due to the importance of reanalysis of already prepared MALDI MS samples or simultaneuous analysis of a sample series. Proteins/peptides and digests were prepared for measurement on a polymer-based metal nano-coated MALDI target and subjected to various storage conditions (−80 °C to RT in a vacuum-sealed pouch and at atmosphere for 6 months. The MS data gathered from these preparations illustrate trends in the aging of different samples and to find optimal storage conditions (−20 or −80 °C in low oxygen environment. The disposable/low cost target proved to be a suitable platform for storage and MALDI MS.

  20. Cadmium versus copper toxicity: Insights from an integrated dissection of protein synthesis pathway in the digestive glands of mussel Mytilus galloprovincialis

    Highlights: • Cu2+-exposure of mussels results in genotoxicity, without affecting MTs production. •Cd2+-exposure of mussels causes low genotoxicity, but induces MTs production. • Both metals induce oxidative stress in mussels, with Cd being the strongest inducer. • Translation is suppressed by both metals, mainly at the initiation and elongation steps. • MTs abrogate translational defects caused by Cd2+, by trapping the toxic metal. -- Abstract: The main purpose of this study was to investigate the impact of metal-mediated stress on the protein-synthesis pathway in mussels. To this end, mussels (Mytilus galloprovincialis) underwent a 15 days exposure to 100 μg/L Cu2+ or Cd2+. Both metals, in particular Cd2+, accumulated in mussel digestive glands and generated a specific status of oxidative-stress. Exposure of mussels to each metal resulted in 40% decrease of the tRNA-aminoacylation efficiency, at the end of exposure. Cu2+ also caused a progressive loss in the capability of 40S-ribosomal subunits to form 48S pre-initiation complex, which reached 34% of the control at the end of exposure. Other steps of translation underwent less pronounced, but measurable damages. Mussels exposed to Cd2+ for 5 days presented a similar pattern of translational dysfunctions in digestive glands, but during the following days of exposure the ribosomal efficiency was gradually restored. Meanwhile, metallothionein levels significantly increased, suggesting that upon Cd2+-mediated stress the protein-synthesizing activity was reorganized both quantitatively and qualitatively. Conclusively, Cd2+ and Cu2+ affect translation at several levels. However, the pattern of translational responses differs, largely depending on the capability of each metal to affect cytotoxic pathways in the tissues, such as induction of antioxidant defense and specific repair mechanisms

  1. Cadmium versus copper toxicity: Insights from an integrated dissection of protein synthesis pathway in the digestive glands of mussel Mytilus galloprovincialis

    Pytharopoulou, S.; Kournoutou, G.G. [Laboratory of Biochemistry, School of Medicine, University of Patras, 26504 Patras (Greece); Leotsinidis, M. [Laboratory of Public Health, School of Medicine, University of Patras, 26504 Patras (Greece); Georgiou, C.D. [Department of Biology, Section of Genetics, Cell Biology and Development, University of Patras, 26504 Patras (Greece); Kalpaxis, D.L., E-mail: dimkal@med.upatras.gr [Laboratory of Biochemistry, School of Medicine, University of Patras, 26504 Patras (Greece)

    2013-09-15

    Highlights: • Cu{sup 2+}-exposure of mussels results in genotoxicity, without affecting MTs production. •Cd{sup 2+}-exposure of mussels causes low genotoxicity, but induces MTs production. • Both metals induce oxidative stress in mussels, with Cd being the strongest inducer. • Translation is suppressed by both metals, mainly at the initiation and elongation steps. • MTs abrogate translational defects caused by Cd{sup 2+}, by trapping the toxic metal. -- Abstract: The main purpose of this study was to investigate the impact of metal-mediated stress on the protein-synthesis pathway in mussels. To this end, mussels (Mytilus galloprovincialis) underwent a 15 days exposure to 100 μg/L Cu{sup 2+} or Cd{sup 2+}. Both metals, in particular Cd{sup 2+}, accumulated in mussel digestive glands and generated a specific status of oxidative-stress. Exposure of mussels to each metal resulted in 40% decrease of the tRNA-aminoacylation efficiency, at the end of exposure. Cu{sup 2+} also caused a progressive loss in the capability of 40S-ribosomal subunits to form 48S pre-initiation complex, which reached 34% of the control at the end of exposure. Other steps of translation underwent less pronounced, but measurable damages. Mussels exposed to Cd{sup 2+} for 5 days presented a similar pattern of translational dysfunctions in digestive glands, but during the following days of exposure the ribosomal efficiency was gradually restored. Meanwhile, metallothionein levels significantly increased, suggesting that upon Cd{sup 2+}-mediated stress the protein-synthesizing activity was reorganized both quantitatively and qualitatively. Conclusively, Cd{sup 2+} and Cu{sup 2+} affect translation at several levels. However, the pattern of translational responses differs, largely depending on the capability of each metal to affect cytotoxic pathways in the tissues, such as induction of antioxidant defense and specific repair mechanisms.

  2. Digestibilidade de alimentos protéicos e energéticos para fêmeas de beta Digestibility of protein feedstuffs and energetic feedstuffs for female beta

    Jener Alexandre Sampaio Zuanon

    2007-08-01

    Full Text Available Foram avaliados os coeficientes de digestibilidade aparente de MS, PB, energia bruta (EB e EE de alimentos protéicos (farelo de soja e farinha de peixe e energéticos (fubá de milho e farelo de trigo para beta (Betta splendens. Fêmeas adultas foram alojadas em gaiolas e mantidas em dois aquários de fibra de vidro (30 peixes/aquário para alimentação e dois para coleta de fezes, ambos de formato cônico e com capacidade para 30 L. Os resultados dos coeficientes de digestibilidade aparente de MS, PB, EB e EE foram, respectivamente, de 69,43; 72,52; 67,91 e 55,50% para farelo de soja; 60,67; 51,15; 75,55 e 58,26% para farinha de peixe; 63,88; 87,16; 77,61 e 50,40% para fubá de milho; e 61,06; 93,37; 58,17 e 65,51% para farelo de trigo. Os resultados obtidos neste estudo permitem otimizar a formulação de dietas práticas balanceadas, economicamente viáveis para a espécie.Apparent digestibility coefficients of dry matter, crude protein, gross energy and ether extract from protein feeds: soybean meal and fish meal and from energy feeds: corn and wheat middlings were evaluated for Siamese fighting fish (Betta splendens. Adult female fish were stocked in cages and held in two fiberglass aquaria (30 fish/aquarium for feeding and two aquaria for collect fecal samples, both with conic shape with 30L. The results of apparent digestibility coefficients for DM, CP, GE and EE were respectively 69.43, 72.52, 67.91 and 55.50% for soybean meal; 60.67, 51.15, 75.55 and 58.26% for fish meal; 63.88, 87.16, 77.61 and 50.40% for corn and 61.06, 93.37, 58.17 and 65.51% for wheat middlings. The determined digestibility values are essential to economically viable practical diet formulation for Siamese fish fighting.

  3. Benefits of supplementing an industrial waste anaerobic digester with energy crops for increased biogas production

    Highlights: ► This study demonstrates the feasibility of co-digestion food industrial waste with energy crops. ► Laboratory batch co-digestion led to improved methane yield and carbon to nitrogen ratio as compared to mono-digestion of industrial waste. ► Co-digestion was also seen as a means of degrading energy crops with nutrients addition as crops are poor in nutrients. ► Batch co-digestion methane yields were used to predict co-digestion methane yield in full scale operation. ► It was concluded that co-digestion led an over all economically viable process and ensured a constant supply of feedstock. - Abstract: Currently, there is increasing competition for waste as feedstock for the growing number of biogas plants. This has led to fluctuation in feedstock supply and biogas plants being operated below maximum capacity. The feasibility of supplementing a protein/lipid-rich industrial waste (pig manure, slaughterhouse waste, food processing and poultry waste) mesophilic anaerobic digester with carbohydrate-rich energy crops (hemp, maize and triticale) was therefore studied in laboratory scale batch and continuous stirred tank reactors (CSTR) with a view to scale-up to a commercial biogas process. Co-digesting industrial waste and crops led to significant improvement in methane yield per ton of feedstock and carbon-to-nitrogen ratio as compared to digestion of the industrial waste alone. Biogas production from crops in combination with industrial waste also avoids the need for micronutrients normally required in crop digestion. The batch co-digestion methane yields were used to predict co-digestion methane yield in full scale operation. This was done based on the ratio of methane yields observed for laboratory batch and CSTR experiments compared to full scale CSTR digestion of industrial waste. The economy of crop-based biogas production is limited under Swedish conditions; therefore, adding crops to existing industrial waste digestion could be a viable

  4. Resolution Improvement in Multidimensional Nuclear Magnetic Resonance Spectroscopy of Proteins

    The work presented in this thesis is concerned with both liquid-state and solid-state nuclear magnetic resonance (NMR) spectroscopy. Most of this work is devoted to the investigation by solid-state NMR of C13-enriched compounds with the principal aim of presenting techniques devised for further improving the spectral resolution in multidimensional NMR of microcrystalline proteins. In fully C13-labelled compounds, the J-coupling induces a broadening of the carbon lineshapes. We show that spin-state-selective technique called IPAP can be successfully combined with standard polarisation transfer schemes in order to remove the J-broadening in multidimensional solid-state NMR correlation experiments of fully C13-enriched proteins. We present subsequently two techniques tailored for liquid-state NMR spectroscopy. The carbon directly detected techniques provide chemical shift information for all backbone hetero-nuclei. They are very attracting for the study of large bio-molecular systems or for the investigation of paramagnetic proteins. In the last part of this thesis, we study the spin-echo J-modulation for homonuclear two-spin 1/2 systems. Under magic-angle spinning, the theory of J-induced spin-echo modulation allows to derive a set of modulation regimes which give a spin-echo modulation exactly equal to the J-coupling. We show that the chemical-shift anisotropy and the dipolar interaction tend to stabilize the spin-echo J-modulation. The theoretical conclusions are supported by numerical simulations and experimental results obtained for three representative samples containing C13 spin pairs. (author)

  5. A comparison of two fecal collection methods for protein and amino acid digestibility coefficients for menhaden fish meal and two grades of pultry-by-product meals in market-size sunshine bass (Morone chrysops X M. saxatilis)

    Apparent digestibility and availability coefficients for protein and amino acids in menhaden fish meal (MEN), pet-food grade (PBM-pet,) and feed-grade poultry by-product meal (PBM-feed) were determined for market-size (500 g) sunshine bass using passive netting or manual stripping of feces. A refer...

  6. Local e extensão da digestão em terneiros desmamados alimentados "Ad Libitum" com dietas ricas em concentrado contendo diferentes fontes de proteína suplementar Site and extent of digestion by weaned calves fed "Ad Libitum" on high concentrate-rich diets with different supplemental protein sources

    Gilberto Vilmar Kozloski

    1999-06-01

    Full Text Available Foram utilizados nove terneiros da raça Holandesa (139 ± 2,4kg, fistulados no duodeno, em um delineamento experimental completamente casualizado para estudar o efeito da suplementação com diferentes fontes protéicas (2% de uréia ou 10% de farinha de carne na dieta total de dietas ricas em concentrado (milho e farelo de soja sobre o local e extensão da digestão do alimento, em condições de consumo ad libitum. A relação volumoso:concentrado das dietas foi de 30:70. A digestibilidade ruminal e total da matéria seca, matéria orgânica e nitrogênio, assim como o fluxo duodenal de nitrogênio microbiano e residual do alimento, e a eficiência da síntese protéica microbiana foram semelhantes nos dois tratamentos (P>0,10. A digestibilidade ruminal do amido também foi semelhante, mas a digestibilidade total foi menor no tratamento com uréia (PNine weaned Holstein calves (139 ± 2.4kg fitted with duodenal cannulas were used in a completly ramdomized design to study the effects of supplemental protein sources (2% of urea or 10% of meat meal of high concentrate diets (corn and soybean meal on site and extent of digestion of feed, in ad libitum feeding conditions. The forage:concentrate ratio was 30:70. The ruminal and total digestibility of dry matter, organic matter and nitrogen, as well as microbial and feed residual nitrogen duodenal flow, and the microbial protein synthesis efficiency were similar for both treatments (P>0.10. The ruminal digestibility of starch was also similar, but total digestibility was lower for urea treatment (P<0.10. However, this is probably due more to the limited capacity of ruminants to digest starch in the intestines than to an effect of the protein supplement. The use of urea or meat meal, as supplemental protein sources for corn and soybean meal based diets, formulated to supply the growth requirements of calves fed ad libitum, did not affect the digestion process.Thus, the choise of the protein

  7. Using gross energy improves metabolizable energy predictive equations for pet foods whereas undigested protein and fiber content predict stool quality.

    Jean A Hall

    Full Text Available Because animal studies are labor intensive, predictive equations are used extensively for calculating metabolizable energy (ME concentrations of dog and cat pet foods. The objective of this retrospective review of digestibility studies, which were conducted over a 7-year period and based upon Association of American Feed Control Officials (AAFCO feeding protocols, was to compare the accuracy and precision of equations developed from these animal feeding studies to commonly used predictive equations. Feeding studies in dogs and cats (331 and 227 studies, respectively showed that equations using modified Atwater factors accurately predict ME concentrations in dog and cat pet foods (r²= 0.97 and 0.98, respectively. The National Research Council (NRC equations also accurately predicted ME concentrations in pet foods (r² = 0.97 for dog and cat foods. For dogs, these equations resulted in an average estimate of ME within 0.16% and 2.24% of the actual ME measured (equations using modified Atwater factors and NRC equations, respectively; for cats these equations resulted in an average estimate of ME within 1.57% and 1.80% of the actual ME measured. However, better predictions of dietary ME in dog and cat pet foods were achieved using equations based on analysis of gross energy (GE and new factors for moisture, protein, fat and fiber. When this was done there was less than 0.01% difference between the measured ME and the average predicted ME (r² = 0.99 and 1.00 in dogs and cats, respectively whereas the absolute value of the difference between measured and predicted was reduced by approximately 50% in dogs and 60% in cats. Stool quality, which was measured by stool score, was influenced positively when dietary protein digestibility was high and fiber digestibility was low. In conclusion, using GE improves predictive equations for ME content of dog and cat pet foods. Nondigestible protein and fiber content of diets predicts stool quality.

  8. Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant.

    Zhang, Lina; de Waard, Marita; Verheijen, Hester; Boeren, Sjef; Hageman, Jos A; van Hooijdonk, Toon; Vervoort, Jacques; van Goudoever, Johannes B; Hettinga, Kasper

    2016-06-01

    Here we provide data from shot-gun proteomics, using filtered-aided sample preparation (FASP), dimethyl labeling and LC-MS/MS, to quantify the changes in the repertoire of human milk proteins over lactation. Milk serum proteins were analyzed at week 1, 2, 3 4, 8, 16, and 24 in milk from four individual mothers. A total of 247 proteins were identified, of which 200 proteins were quantified. The data supplied in this article supports the accompanying publication (Zhang et al., 2006) [1]. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (Vizcaíno et al., 2016) [2] via the PRIDE partner repository with the dataset identifier PXD003465. PMID:26977438

  9. Transforming anaerobic digestion with the Model T of digesters

    Martin, J.F.; Ciotola, R.; Castano, J.; Eger, C.; Schlea, D. [Ohio State Univ., Columbus, OH (United States). Ecological Engineering Program

    2010-07-01

    Most livestock farmers in the United States do not take advantage of anaerobic digester technology because of the high cost and large scale. These limitations therefore reduce the production of renewable energy from farmlands. In order to expand anaerobic digestion methods and improve environmental quality, affordable and smaller-scale digesters should be developed to enable most livestock farmers to convert manure to methane. Doing so would improve their economic efficiency and environmental sustainability. This paper provided an analogy to the development of the Model T to better explain the need and potential for this technology. A modified fixed-dome digester was installed on the Ohio State University dairy in Columbus, Ohio. The digester was unheated, buried, had a volume of 1 m{sup 3} and received diluted dairy manure as feedstock. Biogas was produced at digester temperatures as low 10 degrees C during colder ambient temperatures. Water quality also improved. Results from the first year of operation will be analyzed to improve performance and enable future development of this technology.

  10. Improving the Environmental and Economic Sustainability of Dairy Farming using Value-Added Products derived from the Anaerobic Digestion of Manure

    Collins, Elizabeth

    2013-01-01

    The aim of this study was to examine how manure-derived value-added products via anaerobic digestion impact the environment and economics of dairy farming. An on-farm anaerobic digester (AD) at Virginia dairy was used in this study. The AD performance evaluated for: (i) biogas production (ii) waste stabilization; and (iii) production of organic fertilizer. Locally available organic waste streams were evaluated for co-digestion with dairy manure to increase biomethane production at the on-far...

  11. Improved protein structure selection using decoy-dependent discriminatory functions

    Levitt Michael

    2004-06-01

    -dependent scoring functions for improved protein structure selection. Their success indicates that information from the ensemble of decoy conformations can be used to derive statistical probabilities and facilitate the identification of near-native structures.

  12. Improved method for simultaneous isolation of proteins and nucleic acids.

    Chey, Soroth; Claus, Claudia; Liebert, Uwe Gerd

    2011-04-01

    Guanidinium thiocyanate-phenol-chloroform extraction (GTPC extraction) is widely used in molecular biology for isolating DNA, RNA, and proteins. Protein isolation by commercially available GTPC solutions is time consuming and the resulting pellets are only incompletely soluble. In this study ethanol-bromochloropropane-water was used for precipitation of proteins from the phenol-ethanol phase after GTPC extraction of RNA and DNA. The precipitated proteins can be readily dissolved in 4% SDS for subsequent analysis. This technique allows a fast (30min) and efficient (with a protein recovery of up to 95%) extraction of proteins for the study of transcriptional and posttranscriptional events from the same sample. PMID:21094121

  13. Wood ash treatment, a cost-effective way to deactivate tannins in Acacia cyanophylla Lindl. foliage and to improve digestion by Barbarine sheep

    Ben Salem, H. [Institut National de la Recherche Agronomique de Tunisie (INRAT), Laboratoire des Productions Animales et Fourrageres, Ariana (Tunisia)]. E-mail: bensalem.hichem@iresa.agrinet.tn; Abidi, S. [Institut National de la Recherche Agronomique de Tunisie (INRAT), Laboratoire des Productions Animales et Fourrageres, Ariana (Tunisia); Ecole Superieure d' Agriculture de Mateur, Mateur (Tunisia); Makkar, H.P.S. [Animal Production and Health Section, Joint FAO/IAEA Division, International Atomic Energy Agency, Vienna (Austria); Nefzaoui, A. [Institut National de la Recherche Agronomique de Tunisie (INRAT), Laboratoire des Productions Animales et Fourrageres, Ariana (Tunisia)

    2005-08-19

    Three in vitro experiments and one in vivo experiment were carried out to study the effect of wood ash sources (6 L wood ash solution/kg fresh plant leaves) and levels and treatment duration on the nutritive value of acacia leaves. In Experiment 1, samples of fresh (F), dried (D), or dried and ground (DG) acacia were soaked for 6 h in water or acacia wood ash solution (120 g of wood ash dry matter/L of water). Soaking acacia in water decreased total extractable phenols (TP), total extractable tannins (TT) and extractable condensed tannins (CT). Wood ash treatment led to a further decrease of these phenolic compounds and was highest with DG acacia. Experiment 2 investigated different levels of acacia wood ash (0, 120, 180 and 240 g wood ash dry matter/L of water) and treatment duration (1, 2 and 3 days). The higher the level of wood ash, the lower proportion of TP and CT in acacia was noted. In Experiment 3, two sources of wood ash (i.e., acacia and Aleppo pine) and the same solution of each source of wood ash were used eight times. The two sources of wood ash had similar deactivating effect on TP and CT. The rate of decrease of TP and CT was highest when the same wood ash solution was used four consecutive times and decreased progressively thereafter. In these three experiments, water and wood ash treatment reduced organic matter and crude protein content but substantially increased the neutral detergent fibre (NDFom) content of treated acacia. In the fourth experiment, we treated acacia with acacia wood ash (180 g/L of water for 2 days) and the same solution was used five times. Treated and untreated acacia were air-dried and fed ad libitum to two groups, each of four Barbarine rams together with 300 g of concentrate. Wood ash treatment did not affect intake and OM digestibility of the diet but increased crude protein and NDFom digestibility (P < 0.05). Feeding untreated acacia resulted in negative N balances but with wood ash treatment, N balance was positive

  14. Wood ash treatment, a cost-effective way to deactivate tannins in Acacia cyanophylla Lindl. foliage and to improve digestion by Barbarine sheep

    Three in vitro experiments and one in vivo experiment were carried out to study the effect of wood ash sources (6 L wood ash solution/kg fresh plant leaves) and levels and treatment duration on the nutritive value of acacia leaves. In Experiment 1, samples of fresh (F), dried (D), or dried and ground (DG) acacia were soaked for 6 h in water or acacia wood ash solution (120 g of wood ash dry matter/L of water). Soaking acacia in water decreased total extractable phenols (TP), total extractable tannins (TT) and extractable condensed tannins (CT). Wood ash treatment led to a further decrease of these phenolic compounds and was highest with DG acacia. Experiment 2 investigated different levels of acacia wood ash (0, 120, 180 and 240 g wood ash dry matter/L of water) and treatment duration (1, 2 and 3 days). The higher the level of wood ash, the lower proportion of TP and CT in acacia was noted. In Experiment 3, two sources of wood ash (i.e., acacia and Aleppo pine) and the same solution of each source of wood ash were used eight times. The two sources of wood ash had similar deactivating effect on TP and CT. The rate of decrease of TP and CT was highest when the same wood ash solution was used four consecutive times and decreased progressively thereafter. In these three experiments, water and wood ash treatment reduced organic matter and crude protein content but substantially increased the neutral detergent fibre (NDFom) content of treated acacia. In the fourth experiment, we treated acacia with acacia wood ash (180 g/L of water for 2 days) and the same solution was used five times. Treated and untreated acacia were air-dried and fed ad libitum to two groups, each of four Barbarine rams together with 300 g of concentrate. Wood ash treatment did not affect intake and OM digestibility of the diet but increased crude protein and NDFom digestibility (P < 0.05). Feeding untreated acacia resulted in negative N balances but with wood ash treatment, N balance was positive

  15. The Growth Rate and Efficiency of Rumen Microbial Protein Digestion of Red Clover Silage (Trifolium pratense cv. Sabatron)

    (Trifolium pratense cv. Sabatron). Red clover silage supplemented with different level of carbohydrates has been examined using the in-vitro gas production technique. Cumulative gas production, hydro.gen sulfite production, and ammonia was followed and used as indicators of microbial growth rate and extent of protein degradation. Microbial nitrogen production, VFA, and efficiency microbial production was used as indicator of nitrogen use efficiency. 15N was used as a microbial marker to estimate the amount of nitrogen incorporation into microbial protein. Supplementation of Red clover with increasing 5 levels; 0 g; 0.625 g; 0.15 g; 0.225 g and 0.3 g of maize starch led to graded increase in microbial growth and protein degradation. This was reflected in the increasing gas production and the accumulation of hydrogen sulfite. Diurnal change in ammonia production reflected the microbial utilization of ammonia for protein synthesis. Protein microbe (P<0.001) as VFA (P<0.001) increased due to carbohydrate addition as well as utilization of nitrogen (P<0.001). There was also the efficiency of nitrogen utilization which increased significantly. This result suggested that energy supply can increased efficiency of nitrogen use in the rumen and may reduce nitrogen losses into the environment. (author)

  16. Directed evolution methods for improving polypeptide folding and solubility and superfolder fluorescent proteins generated thereby

    Waldo, Geoffrey S.

    2007-09-18

    The current invention provides methods of improving folding of polypeptides using a poorly folding domain as a component of a fusion protein comprising the poorly folding domain and a polypeptide of interest to be improved. The invention also provides novel green fluorescent proteins (GFPs) and red fluorescent proteins that have enhanced folding properties.

  17. Prospects for genetic improvement of seed protein in plants

    A survey of protein synthesizing systems reveals that certain components of the system cannot be varied to alter the amount or type of specific protein in the seed while others can be modified by mutation and selection. A number of possible approaches that might prove of use in obtaining more and better plant proteins are suggested. (author)

  18. Selenocystamine improves protein accumulation in chloroplasts of eukaryotic green algae

    Ferreira-Camargo, Livia S; Tran, Miller; Beld, Joris; Burkart, Michael D.; Mayfield, Stephen P

    2015-01-01

    Eukaryotic green algae have become an increasingly popular platform for recombinant proteins production. In particular, Chlamydomonas reinhardtii, has garnered increased attention for having the necessary biochemical machinery to produce vaccines, human antibodies and next generation cancer targeting immunotoxins. While it has been shown that chloroplasts contain chaperones, peptidyl prolylisomerases and protein disulfide isomerases that facilitate these complex proteins folding and assembly,...

  19. Allerginicity of wheat proteins: the effect of thermal processing (baking and cooking), high pressure treatment and enzymatic digestion

    Kitanovičová, Andrea; Janatková, I.; Houska, M.; Tučková, Ludmila

    Latina : Allergy data laboratories, 2007, s. 43-43. [International Symposium on Molecular Allergology /2./. Roma (IT), 22.04.2007-24.04.2007] R&D Projects: GA ČR GA310/05/2245 Institutional research plan: CEZ:AV0Z50200510 Keywords : food allergy * wheat proteins * thermal processing Subject RIV: EE - Microbiology, Virology

  20. Identifying Gel-Separated Proteins Using In-Gel Digestion, Mass Spectrometry, and Database Searching: Consider the Chemistry

    Albright, Jessica C.; Dassenko, David J.; Mohamed, Essa A.; Beussman, Douglas J.

    2009-01-01

    Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry is an important bioanalytical technique in drug discovery, proteomics, and research at the biology-chemistry interface. This is an especially powerful tool when combined with gel separation of proteins and database mining using the mass spectral data. Currently, few hands-on…

  1. Gut health immunomodulatory and anti-inflammatory functions of gut enzyme digested high protein micro-nutrient dietary supplement-Enprocal

    Kanwar Rupinder K; Kanwar Jagat R

    2009-01-01

    Abstract Background Enprocal is a high-protein micro-nutrient rich formulated supplementary food designed to meet the nutritional needs of the frail elderly and be delivered to them in every day foods. We studied the potential of Enprocal to improve gut and immune health using simple and robust bioassays for gut cell proliferation, intestinal integrity/permeability, immunomodulatory, anti-inflammatory and anti-oxidative activities. Effects of Enprocal were compared with whey protein concentra...

  2. ON-FARM PRETREATMENT TECHNOLOGIES FOR IMPROVING ENZYMATIC DIGESTIBILITY OF CELLULOSE AND HEMICELLULOSE PRESENT IN PERENNIAL GRASS AND CORN STOVER

    Recently, wet storage methods have been proposed for feedstock preservation and on-farm storage of perennial grass and corn stover biomass. The advantages over a dry storage system include lower risk of fire, reduced harvest costs, and improved feedstock susceptibility to enzymatic hydrolysis. We ...

  3. Assessment of protein quality of soybean meal and 00-rapeseed meal toasted in the presence of lignosulfonate by amino acid digestibility in growing pigs and Maillard reaction products.

    Hulshof, T G; Bikker, P; van der Poel, A F B; Hendriks, W H

    2016-03-01

    An experiment was conducted to determine protein quality in processed protein sources using the content of AA, -methylisourea (OMIU)-reactive Lys, Maillard reaction products (MRP), and cross-link products; the standardized ileal digestibility (SID) of CP and AA; and growth performance in growing pigs as criteria. Differences in protein quality were created by secondary toasting (at 95°C for 30 min) of soybean meal (SBM) and rapeseed meal (RSM) in the presence of lignosulfonate resulting in processed SBM (pSBM) and processed RSM (pRSM). The processing treatment was used as a model for overprocessed protein sources. Ten growing pigs were each fed 1 of the 4 diets containing SBM, pSBM, RSM, or pRSM in each of 3 periods. Ileal chyme was collected at the end of each period and analyzed for CP, AA, and OMIU-reactive Lys. Diets were analyzed for furosine and carboxymethyllysine (CML) as an indicator for MRP and lysinoalanine (LAL), which is a cross-link product. The SBM and RSM diets contained furosine, CML, and LAL, indicating that the Maillard reaction and cross-linking had taken place in SBM and RSM, presumably during the oil extraction/desolventizing process. The amounts of furosine, CML, and LAL were elevated in pSBM and pRSM due to further processing. Processing resulted in a reduction in total and OMIU-reactive Lys contents and a decrease in G:F from 0.52 to 0.42 for SBM and 0.46 to 0.39 for RSM ( = 0.006), SID of CP from 83.9 to 71.6% for SBM and 74.9 to 64.6% for RSM ( < 0.001), and SID of AA ( < 0.001), with the largest effects for total and OMIU-reactive Lys. The effects of processing could be substantial and should be taken into account when using processed protein sources in diets for growing pigs. The extent of protein damage may be assessed by additional analyses of MRP and cross-link products. PMID:27065264

  4. Optimization of separation and digestion conditions in immune complexome analysis

    Baba, Miyako; Ohyama, Kaname; Kishikawa, Naoya; Kuroda, Naotaka

    2013-01-01

    Immune complexome analysis is a method for identifying and profiling of antigens in circulating immune complexes (CICs); it involves separation of immune complexes from serum, direct tryptic digestion of these complexes, and protein analysis via nano-liquid chromatography–tandem mass spectrometry (nano-LC–MS/MS). To improve this method, we initially investigated the effects of two factors—the gradient elution program and nano-LC column type (C18-packed, C8-packed, or packed spray capillary co...

  5. Proteína bruta e energia digestível em dietas para alevinos de curimbatá (Prochilodus affins Crude protein and digestible energy in the diets for curimbatá fingerlings (Prochilodus affins

    Marcos Antonio Delmondes Bomfim

    2005-12-01

    Full Text Available Objetivando-se determinar as exigências de proteína bruta (PB em função do nível de energia digestível (ED da dieta para alevinos de curimbatá (Prochilodus affins, foram utilizados 256 peixes com peso inicial de 2,72 ± 0,11 g, mantidos em 32 aquários de 100 L, dotados de abastecimento de água, temperatura controlada e aeração individuais. O experimento foi realizado seguindo-se esquema fatorial 4 x 2 (quatro níveis de PB: 18,0; 22,0; 26,0; e 30,0%, combinados com dois níveis de ED: 2.700 e 3.000 kcal/kg, em um delineamento inteiramente ao acaso, com quatro repetições e oito peixes por unidade experimental. Os peixes foram alimentados ad libitum em duas refeições diárias durante 78 dias. Avaliaram-se o ganho de peso, o consumo aparente de racão, a conversão alimentar aparente, a taxa de crescimento específico, a taxa de eficiência protéica, a eficiência de retenção de nitrogênio, a umidade, a proteína e a gordura corporais e as porcentagens de nitrogênio e de gordura no ganho de peso. Verificou-se que não houve interação dos níveis de PB ´ ED, à exceção da porcentagem de gordura no ganho de peso. Com o nível de 3.000 kcal de ED/kg, obtiveram-se peixes com maiores níveis de matéria seca, gordura corporal e porcentagem de gordura no ganho de peso. Concluiu-se que a exigência de PB e ED para alevinos de curimbatá é de 26,05% e 2.700 kcal/kg, respectivamente, que corresponde a uma relação ED:PB de 10,36 kcal de ED/g de PB, por proporcionar as melhores respostas em ganho de peso e composição de carcaça.Two hundred and fifty six curimbatá (Prochilodus affins fingerlings averaging initial weight of 2.72 ± 0.11 g, stocked in 32 aquariums (100 L with water renewal, controlled temperature and individual aeration, were used to determine the dietary crude protein (CP requirements, according to the digestible energy level (DE. The experiment was carried out in to a 4 x 2 factorial scheme (four CP levels: 18

  6. Food allergen digestibility: The influence on allergenicity

    Bøgh, Katrine Lindholm; Madsen, Charlotte Bernhard

    2012-01-01

    Food allergy is a major health problem in the Western countries, affecting 3-8% of the population. What makes a dietary protein a food allergen has not yet been established, though several characteristics have been proposed to be shared by the food allergens. One of the features believed to be a general characteristic is resistance to digestion. This is based on studies showing that allergenic dietary proteins in general were more resistant to digestion than dietary proteins with no proven al...

  7. Effect of salseed-meal tannins on protein synthesis, 35S incorporation and cellulose digestibility by rumen microbes in vitro

    Tannins from seed-meal of sal (Shorea robusta Gaertn. F.) were fractionated after treatments into ethyl acetate (EA) and lead acetate (LA) fractions. In trial 1, incorporation of 35S from (NH4)235SO4 into microbial protein declined due to the effect of both 2% EA and LA fractions as compared to control. Microbial protein synthesis was depressed significantly (P 35S incorporation and cellulolysis at all levels of both the tannin fractions. It may be inferred that both the tannin fractions from salseed-meal showed antimicrobial activity and LA fraction seems to be more deleterious than EA fraction for rumen metabolism. The experiments were conducted in vitro using rumen liquor of a non-pregnant dry cow having permanent rumen fistula. (auth.)

  8. Chemical composition and standardized ileal digestibility of protein and amino acids from blue mussel, starfish, and fish silage in pigs

    Nørgaard, Jens Vinther; Petersen, Jens Kjerulf; Tørring, Ditte Bruunshøj;

    2015-01-01

    –162 g CP/kg and 5 g chromicoxide/kg. Endogenous losses of protein and AA were estimated by feeding an N-free diet.On a dry matter (DM) basis, mussel meal contained 605 g, mussel silage 575 g, starfish meal700 g, starfish juice 393 g, and fish silage 776 g CP/kg. The ratio of AA to CP ranged from0.83 to...

  9. Lisina digestível em dietas de baixa proteína para frangos de corte tipo caipira de um aos 28 dias Digestible lysine in diets containing low protein concentrations for broiler type redneck from 1 to 28 days

    H.G. Oliveira

    2013-04-01

    Full Text Available Avaliou-se a inclusão de diferentes porcentagens de lisina digestível em dietas de baixa proteína para frangos de corte tipo caipira, machos e fêmeas, com idade entre um e 28 dias. Utilizaram-se 792 machos e 792 fêmeas de linhagem comercial, de um dia de idade, distribuídos em delineamento inteiramente ao acaso, em esquema fatorial 2x6 (sexo x porcentagem de lisina digestível: 0,85; 0,90; 0,95; 1,00; 1,05 e 1,10% com seis repetições de 22 aves. Não foi constatada interação (P>0,05 de sexo versus inclusão de lisina. Observou-se superioridade (P0,05 para conversão alimentar. Da composição centesimal da carcaça, apenas o percentual de matéria mineral foi influenciada (PThe inclusion of different percentages of digestible lysine in low-protein diets was evaluated for male and female free-range broiler chickens, from 1 to 28 days. We used 792 female and 792 male naked neck chickens a day in a completely randomized 2x6 factorial scheme (sex x percentages of digestible lysine: 0.85, 0.90, 0.95, 1.00, 1.05 and1.10% with six replicates of 22 broilers. No interaction of sex versus lysine was found. Superiority was observed (P0.05 in food conversion.In the chemical composition of the carcass, only thepercentage of mineral matter was influenced (P<0.05 bydigestible lysine levels.It was concluded that the level of 0.85% for type redneck broiler meets the nutritional requirement of digestible lysine in diets containing lower protein concentrations.

  10. Exigência de treonina, com base no conceito de proteína ideal, de alevinos de tilápia-do-nilo Digestible threonine requirement of Nile tilapia fingerlings using ideal protein concept

    Marcos Antonio Delmondes Bomfim

    2008-12-01

    Full Text Available Avaliou-se o efeito dos níveis de treonina digestível, com base no conceito de proteína ideal, em rações com 1,35% de lisina digestível sobre o desempenho de alevinos de tilápia-do-nilo (Oreochromis niloticus. Utilizaram-se 432 alevinos revertidos de tilápia, linhagem tailandesa, com peso inicial de 1,64 ± 0,03 g, em delineamento inteiramente ao acaso, com seis tratamentos, cada um com seis repetições, e doze peixes por unidade experimental. Os tratamentos consistiram de cinco rações com diversas relações treonina:lisina digestível (69,0; 74,0; 79,0; 84,0 e 89,0% e relação metionina + cistina:lisina digestível de 70,0% e uma ração com relação treonina:lisina digestível de 84,0% e de metionina + cistina:lisina digestível de 75,0%, todas isoenergéticas e isoprotéicas. Os peixes foram mantidos em 36 aquários de 130 L, dotados de abastecimento de água, temperatura controlada e aeração individuais, e alimentados à vontade, seis vezes ao dia, durante 30 dias. Avaliaram-se o desempenho, a composição corporal, as deposições de proteína e gordura e a eficiência de retenção de nitrogênio dos peixes. O consumo de ração, o teor de proteína corporal e a deposição de proteína corporal aumentaram de forma linear de acordo com a relação treonina:lisina na ração, contudo, não foram influenciados pelo aumento da relação metionina + cistina:lisina da ração. Os níveis de treonina total ou digestível que proporcionaram os melhores resultados de desempenho em alevinos de tilápia-do-nilo foram de 1,11 e 0,99%, enquanto os níveis que promoveram melhor deposição de proteína corporal foram de 1,43 e 1,28%, que correspondem às relações treonina:lisina total de 71,0 e 69,0% e treonina:lisina digestível de 90,0 e 89,0%.The effects of digestible threonine levels, based on ideal protein concept in diets with 1.35% of digestible lysine on Nile tilapia (Oreochromis niloticus fingerlings performance. Four hundred

  11. Development of Improved Methods for Protein Separation and Identification

    Iskra Sainova; Ilina Valkova; Velichka Pavlova; Elena Nikolova

    2013-01-01

    For identification of proteins, able to connect specifically or non-specifically with peptide SCGN, protein material from RIN-5F rat insulinoma malignant cells and E. coli bacteria strains, both with inserted by transfection with recombinant vectors rat gene SCGN, was isolated. Subsequently, SCGN peptide was isolated, precipitated and incubated with lysates from rat pancreas and brain, known as anatomic organs with highest expression of SCGN gene. For determination of proteins with highest af...

  12. Heat shock response improves heterologous protein secretion in Saccharomyces cerevisiae

    Hou, Jin; Österlund, Tobias; Liu, Zihe;

    2013-01-01

    The yeast Saccharomyces cerevisiae is a widely used platform for the production of heterologous proteins of medical or industrial interest. However, heterologous protein productivity is often low due to limitations of the host strain. Heat shock response (HSR) is an inducible, global, cellular...... the accumulation of mis-folded or aggregated proteins. In this work, we over-expressed a mutant HSF1 gene HSF1-R206S which can constitutively activate HSR, so the heat shock response was induced at different levels, and we studied the impact of HSR on heterologous protein secretion. We found that moderate and high...

  13. Improving protein function prediction methods with integrated literature data

    Gabow Aaron P

    2008-04-01

    Full Text Available Abstract Background Determining the function of uncharacterized proteins is a major challenge in the post-genomic era due to the problem's complexity and scale. Identifying a protein's function contributes to an understanding of its role in the involved pathways, its suitability as a drug target, and its potential for protein modifications. Several graph-theoretic approaches predict unidentified functions of proteins by using the functional annotations of better-characterized proteins in protein-protein interaction networks. We systematically consider the use of literature co-occurrence data, introduce a new method for quantifying the reliability of co-occurrence and test how performance differs across species. We also quantify changes in performance as the prediction algorithms annotate with increased specificity. Results We find that including information on the co-occurrence of proteins within an abstract greatly boosts performance in the Functional Flow graph-theoretic function prediction algorithm in yeast, fly and worm. This increase in performance is not simply due to the presence of additional edges since supplementing protein-protein interactions with co-occurrence data outperforms supplementing with a comparably-sized genetic interaction dataset. Through the combination of protein-protein interactions and co-occurrence data, the neighborhood around unknown proteins is quickly connected to well-characterized nodes which global prediction algorithms can exploit. Our method for quantifying co-occurrence reliability shows superior performance to the other methods, particularly at threshold values around 10% which yield the best trade off between coverage and accuracy. In contrast, the traditional way of asserting co-occurrence when at least one abstract mentions both proteins proves to be the worst method for generating co-occurrence data, introducing too many false positives. Annotating the functions with greater specificity is harder

  14. Corn germ with pericarp in relation to whole corn: nutrient contents, food and protein efficiency, and protein digestibility-corrected amino acid score

    Maria Margareth Veloso Naves; Maiza Vieira Leão de Castro; Aline Luiz de Mendonça; Grazielle Gebrim Santos; Maria Sebastiana Silva

    2011-01-01

    The germ fraction with pericarp (bran) is generated in the industrial processing of corn kernel, and it is used for oil extraction and animal feed. This study evaluated the nutritional and protein quality of this fraction in relation to whole corn. The proximate composition, mineral contents, and amino acid profile of the germ fraction with pericarp and of whole corn were determined. A 4-week experiment was conducted using 36 weanling male Wistar rats, and three 10%-protein diets (reference, ...

  15. Open-tubular capillary electrochromatography with bare gold nanoparticles-based stationary phase applied to separation of trypsin digested proteins

    Mikšík, Ivan; Lacinová, Kateřina; Zmatlíková, Zdeňka; Sedláková, Pavla; Král, V.; Sýkora, D.; Řezanka, P.; Kašička, Václav

    Olomouc : Faculty of Science, Palacký University Olomouc, 2012 - (Maier, V.; Ševčík, J.), s. 16-17 ISBN 978-80-244-3115-4. ISSN 0232-0061. [International Symposium Advances in Chromatography and Electrophoresis and Chiranal. Olomouc (CZ), 11.06.2012-14.06.2012] R&D Projects: GA ČR(CZ) GA203/09/0675; GA ČR(CZ) GAP206/12/0453 Institutional research plan: CEZ:AV0Z50110509; CEZ:AV0Z40550506 Keywords : open-tubular capillary electrochromatography * gold nanoparticles * glycation of proteins Subject RIV: CB - Analytical Chemistry, Separation

  16. Analysis of digester design concepts

    Ashare, E.; Wilson, E. H.

    1979-01-29

    Engineering economic analyses were performed on various digester design concepts to determine the relative performance for various biomass feedstocks. A comprehensive literature survey describing the state-of-the-art of the various digestion designs is included. The digester designs included in the analyses are CSTR, plug flow, batch, CSTR in series, multi-stage digestion and biomethanation. Other process options investigated included pretreatment processes such as shredding, degritting, and chemical pretreatment, and post-digestion processes, such as dewatering and gas purification. The biomass sources considered include feedlot manure, rice straw, and bagasse. The results of the analysis indicate that the most economical (on a unit gas cost basis) digester design concept is the plug flow reactor. This conclusion results from this system providing a high gas production rate combined with a low capital hole-in-the-ground digester design concept. The costs determined in this analysis do not include any credits or penalties for feedstock or by-products, but present the costs only for conversion of biomass to methane. The batch land-fill type digester design was shown to have a unit gas cost comparable to that for a conventional stirred tank digester, with the potential of reducing the cost if a land-fill site were available for a lower cost per unit volume. The use of chemical pretreatment resulted in a higher unit gas cost, primarily due to the cost of pretreatment chemical. A sensitivity analysis indicated that the use of chemical pretreatment could improve the economics provided a process could be developed which utilized either less pretreatment chemical or a less costly chemical. The use of other process options resulted in higher unit gas costs. These options should only be used when necessary for proper process performance, or to result in production of a valuable by-product.

  17. Interaction of sorghum tannins with wheat proteins and effects on in vitro starch digestibility in wheat flour tortillas

    Excess calorie intake and associated disease risks are a major problem in many parts of the world. Carbohydrates contribute the most calories in the diet, making starch-based foods a logical target for improvement. This study investigated the potential interaction of sorghum bran proanthocyanidins (...

  18. Growth and survival of juvenile queen conch, Strombus gigas fed artificial diets containing varying levels of digestible protein and energy

    Aquaculture methods for queen conch, Strombus gigas, have been established for several decades. However, there is a need to improve husbandry techniques for the growout of juveniles. The purpose of this study was to determine growth and survival of juvenile queen conch fed artificial diets with incr...

  19. Analysis of the role of the gene coding the Amyloid-Precursor Protein Binding Protein 1 (APP-BP1) in the radio-sensitivity of epidermoid carcinomas of the upper aero-digestive tract infected by the human papillomavirus

    As the human papillomavirus (HPV) is at the origin of 25% of upper aero-digestive tract cancers, and as these tumours present an increased radio-sensitivity compared to other tumours, probably due to a greater transcriptional activity of p53, the authors report the study on the influence of a decrease of the expression of the APP-BP1 in these tumours which could favour a radio-induced apoptosis. By using a reverse transcriptase polymerase chain reaction (RT-PCR), they assessed the APP-BP1 expression levels as well as expression levels of transcriptions coding onco-proteins known to be over-expressed in HPV+ tumours. They compared the radio-sensitivities of HPV+ and HPV- cells, the first one appearing to be greater than the second one. Short communication

  20. Protein Sequence Classification with Improved Extreme Learning Machine Algorithms

    Jiuwen Cao

    2014-01-01

    Full Text Available Precisely classifying a protein sequence from a large biological protein sequences database plays an important role for developing competitive pharmacological products. Comparing the unseen sequence with all the identified protein sequences and returning the category index with the highest similarity scored protein, conventional methods are usually time-consuming. Therefore, it is urgent and necessary to build an efficient protein sequence classification system. In this paper, we study the performance of protein sequence classification using SLFNs. The recent efficient extreme learning machine (ELM and its invariants are utilized as the training algorithms. The optimal pruned ELM is first employed for protein sequence classification in this paper. To further enhance the performance, the ensemble based SLFNs structure is constructed where multiple SLFNs with the same number of hidden nodes and the same activation function are used as ensembles. For each ensemble, the same training algorithm is adopted. The final category index is derived using the majority voting method. Two approaches, namely, the basic ELM and the OP-ELM, are adopted for the ensemble based SLFNs. The performance is analyzed and compared with several existing methods using datasets obtained from the Protein Information Resource center. The experimental results show the priority of the proposed algorithms.

  1. Engineering Digestion: Multiscale Processes of Food Digestion

    Bornhorst, GM; Gouseti, O; Wickham, MSJ; Bakalis, S.

    2016-01-01

    Food digestion is a complex, multiscale process that has recently become of interest to the food industry due to the developing links between food and health or disease. Food digestion can be studied by using either in vitro or in vivo models, each having certain advantages or disadvantages. The recent interest in food digestion has resulted in a large number of studies in this area, yet few have provided an in-depth, quantitative description of digestion processes. To provide a framework to ...

  2. Determination of digestibility, tissue deposition, and metabolism of the omega-3 fatty acid content of krill protein concentrate in growing rats.

    Bridges, Kayla M; Gigliotti, Joseph C; Altman, Stephanie; Jaczynski, Jacek; Tou, Janet C

    2010-03-10

    Krill protein concentrate (KPC) consists of high-quality protein (77.7% dry basis) and lipids (8.1% dry basis) that are rich (27% of total fatty acids) in omega-3 polyunsaturated fatty acids (omega-3 PUFAs). The objective of the study was to determine digestibility, tissue deposition, metabolism, and tissue oxidative stability of the omega-3 PUFAs provided by KPC. Young female Sprague-Dawley rats (n = 10/group) were fed ad libitum isocaloric diets for 4 weeks with either 10% freeze-dried KPC or 10% casein. The casein diet contained 5.3% added corn oil (CO), whereas the KPC contained 5.3% total lipids from 0.9% krill oil (KO) provided by KPC and 4.4% added corn oil (KO + CO). Fatty acid compositions of various tissues were analyzed by gas chromatography. Lipid peroxidation was determined by thiobarbituric acid reactive substances (TBARS). Total antioxidant capacity and urinary eicosanoid metabolites were determined by enzyme immunoassay. The omega-3 PUFAs provided in KO from KPC increased (P = 0.003) docosahexaenoic acid (DHA) concentration in the brain. DHA and eicosapentaenoic acid (EPA) content in fat pads and liver were increased (P < 0.01), whereas the omega-6 PUFA, arachidonic acid (AA), was decreased (P < 0.01) in rats fed the KPC diet containing the KO + CO mixture compared to rats fed the casein diet containing pure CO. Feeding the KPC diet decreased pro-inflammatory 2-series prostaglandin and thromboxane metabolites. There was no significant difference in TBARS or total antioxidant capacity in the tissues of rats fed the different diets. On the basis of the study results, the low amount of omega-3 PUFAs provided by the KO content of KPC provides beneficial effects of increasing tissue EPA and DHA deposition and reduced AA-derived 2-series eicosanoid metabolites without increasing lipid peroxidation. Therefore, consumption of KPC has the potential to provide a healthy and sustainable source of omega-3 PUFAs. PMID:20131797

  3. Improving pollutants removal by microalgae Chlorella PY-ZU1 with 15% CO2 from undiluted anaerobic digestion effluent of food wastes with ozonation pretreatment.

    Cheng, Jun; Ye, Qing; Xu, Jiao; Yang, Zongbo; Zhou, Junhu; Cen, Kefa

    2016-09-01

    In order to purify various pollutants (3108mg COD/L, 2120mg NH3-N/L) in the undiluted anaerobic digestion effluent of food wastes (UADEFW), ozonation pretreatment was employed to improve pollutants removal by microalgae mutant Chlorella PY-ZU1 with 15% CO2. Ozonation pretreatment broke CC bonds and benzene rings of refractory organics such as unsaturated fatty acids and phenols in UADEFW and degraded them into low-molecular-weight organics such as methanoic acid and methanal, but excessive ozone induced the accumulation of toxic by-products. The microalgal growth rate and biomass yield markedly increased to the peaks of 456mg/L/d and 4.3g/L, respectively, when the UADEFW was pretreated with 2mg-O3/mg-C of ozone. The removal efficiencies of NH3-N, TP and COD reached 99%, 99% and 68%, respectively. The lipid and carbohydrate contents of microalgal biomass increased because of the relative lack of nitrogen when microalgae was cultured with 15% CO2 to purify the UADEFW with ozonation pretreatment. PMID:27243605

  4. Improving Protein Fold Recognition by Deep Learning Networks

    Jo, Taeho; Hou, Jie; Eickholt, Jesse; Cheng, Jianlin

    2015-12-01

    For accurate recognition of protein folds, a deep learning network method (DN-Fold) was developed to predict if a given query-template protein pair belongs to the same structural fold. The input used stemmed from the protein sequence and structural features extracted from the protein pair. We evaluated the performance of DN-Fold along with 18 different methods on Lindahl’s benchmark dataset and on a large benchmark set extracted from SCOP 1.75 consisting of about one million protein pairs, at three different levels of fold recognition (i.e., protein family, superfamily, and fold) depending on the evolutionary distance between protein sequences. The correct recognition rate of ensembled DN-Fold for Top 1 predictions is 84.5%, 61.5%, and 33.6% and for Top 5 is 91.2%, 76.5%, and 60.7% at family, superfamily, and fold levels, respectively. We also evaluated the performance of single DN-Fold (DN-FoldS), which showed the comparable results at the level of family and superfamily, compared to ensemble DN-Fold. Finally, we extended the binary classification problem of fold recognition to real-value regression task, which also show a promising performance. DN-Fold is freely available through a web server at http://iris.rnet.missouri.edu/dnfold.

  5. The effect of heat treatment of whole cottonseed on site and extent of protein digestion in dairy cows.

    Pena, F; Tagari, H; Satter, L D

    1986-05-01

    Six mature Holstein cows in late lactation and fitted with permanent ruminal, duodenal and ideal cannulae were used in a double 3 X 3 Latin-square design to study the effect of roasting or extruding of cottonseed on protein degradation in the rumen and availability of amino acids in the small intestine. Raw whole cottonseed (CS), extruded whole cottonseed (ECS), and roasted whole cottonseed (RCS) were fed in diets containing 17% crude protein and composed of 42% whole cottonseed, 26% corn grain and 29% hay supplemented with dry molasses, vitamins and minerals. The diets were isocaloric and contained 1.86 Mcal NEL/kg. Acid detergent lignin was used as a digesta marker, and diaminopimelic acid as a bacterial marker. Ruminal ammonia concentration was higher (P less than .05) for CS than for ECS and RCS (15.7, 12.7 and 10.2 mM). Concentrations of isobutyrate (1.3 vs 0.8 and 0.8 mM) and isovalerate (1.8 vs 1.1 and 1.1 mM) were higher (P less than .05) for CS compared with ECS and RCS. Non-ammonia nitrogen flow to the duodenum (g/d) was 248, 300 and 350 for CS, ECS, and RCS, with RCS higher (P less than .05) that in CS. Apparent absorption of total amino acids in the small intestine was .80, 1.01, and 1.24 kg/d, for CS, ECS, and RCS, respectively, with RCS higher (P less than .05) than CS. Apparent absorption of essential and non-essential amino acids was 376, 425; 458, 548;610 and 628 g/d for CS, ECS and RCS respectively, with RCS higher (P less than .05) than CS. PMID:3755130

  6. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein

    Shaner, Nathan C; Campbell, Robert E; Steinbach, Paul A; Giepmans, Ben N G; Palmer, Amy E; Tsien, Roger Y

    2004-01-01

    Fluorescent proteins are genetically encoded, easily imaged reporters crucial in biology and biotechnology. When a protein is tagged by fusion to a fluorescent protein, interactions between fluorescent proteins can undesirably disturb targeting or function. Unfortunately, all wild-type yellow-to-red

  7. Seed protein improvement in wheat and pulses through induced mutation

    Gamma rays and chemical mutagens (sodium azide and ethyl methane sulphonate) were used separately to induce mutations in wheat, triticale and mungbean. An increased variation in yield and protein content, determined by dye-binding capacity and the micro-Kjeldahl method, was observed in the M3 and M4 generations as compared with controls. In fertilizer trials an increase in grain yield and protein percentage was found invariably in all the treatments given at different stages in split applications. The genetic diversity was observed in the collections from northern areas of Pakistan regarding the protein content and morphological and physiological characters. (author)

  8. Evaluation of the digestibility of nutrients in pigs by ileal cannulation technique.

    Szelényi-Galátai, M; Fébel, H; Szegedi, B; Zsolnai-Harczi, I; Huszár, S

    1996-01-01

    A simple T-cannula was surgically inserted into the ileum of growing female Large White x Dutch Landrace swine. Chymus samples collected with the help of the cannula were analysed to determine the apparent digestibility of different dietary nutrients such as dry matter, crude protein and starch, as well as of some essential amino acids. The following three experiments were conducted: (I) of the cereals, the "Tewo" triticale variety fed alone and in 1:1 concentrate mixtures with wheat or maize was studied; (II) waxy maize hybrids and maize hybrids of normal endosperm were compared without treatment and after treatment by the Bocchi technology; (III) untreated and extruded maize supplemented either with extracted soybean or with extracted sunflower was also tested. The ileal digestibility of protein, amino acids and starch was determined and compared with values obtained by conventional (faecal) analysis. When feeding triticale alone or in combination with wheat or maize, the ileal digestibility of crude protein and amino acids increased as a result of feeding the cereal combinations (e.g. crude protein 72-79%, lysine 75-79%, threonine 63-78%, methionine 74-86%). Comparison of the two maize hybrids revealed that, with the exception of methionine, lysine and tyrosine, the amino acids of the waxy hybrid had higher ileal digestibility. Treatment of the normal hybrid by the Bocchi technology caused a significant improvement in the ileal digestibility of cystine, isoleucine, lysine, valine, and dry matter. This treatment also improved the faecal digestibility of all test nutrients but methionine. Bocchi treatment of the waxy hybrid significantly improved the ileal digestibility of isoleucine, leucine, methionine, tyrosine and valine, and the faecal digestibility of cystine, dry matter, and crude protein. No major variety- or treatment-related differences were found in the digestibility of starch. As a result of extrusion, the digestibility of nutrients of the soybean

  9. Molecular cloning and characterization of novel Morus alba germin-like protein gene which encodes for a silkworm gut digestion-resistant antimicrobial protein.

    Bharat Bhusan Patnaik

    Full Text Available BACKGROUND: Silkworm fecal matter is considered one of the richest sources of antimicrobial and antiviral protein (substances and such economically feasible and eco-friendly proteins acting as secondary metabolites from the insect system can be explored for their practical utility in conferring broad spectrum disease resistance against pathogenic microbial specimens. METHODOLOGY/PRINCIPAL FINDINGS: Silkworm fecal matter extracts prepared in 0.02 M phosphate buffer saline (pH 7.4, at a temperature of 60°C was subjected to 40% saturated ammonium sulphate precipitation and purified by gel-filtration chromatography (GFC. SDS-PAGE under denaturing conditions showed a single band at about 21.5 kDa. The peak fraction, thus obtained by GFC wastested for homogeneityusing C18reverse-phase high performance liquid chromatography (HPLC. The activity of the purified protein was tested against selected Gram +/- bacteria and phytopathogenic Fusarium species with concentration-dependent inhibitionrelationship. The purified bioactive protein was subjected to matrix-assisted laser desorption and ionization-time of flight mass spectrometry (MALDI-TOF-MS and N-terminal sequencing by Edman degradation towards its identification. The N-terminal first 18 amino acid sequence following the predicted signal peptide showed homology to plant germin-like proteins (Glp. In order to characterize the full-length gene sequence in detail, the partial cDNA was cloned and sequenced using degenerate primers, followed by 5'- and 3'-rapid amplification of cDNA ends (RACE-PCR. The full-length cDNA sequence composed of 630 bp encoding 209 amino acids and corresponded to germin-like proteins (Glps involved in plant development and defense. CONCLUSIONS/SIGNIFICANCE: The study reports, characterization of novel Glpbelonging to subfamily 3 from M. alba by the purification of mature active protein from silkworm fecal matter. The N-terminal amino acid sequence of the purified protein was

  10. 水解鱼蛋白对大菱鲆幼鱼消化率的影响%THE EFFECTS OF FISH PROTEIN HYDROLYSATE ON THE DIGESTIBILITY OF JUVENILE TURBOT (SCOPHTHALMUS MAXIMUS L.)

    卫育良; 梁萌青; 郑珂珂; 王新星

    2014-01-01

    设计5组等氮等脂等能的饲料,在室内流水系统进行68d的养殖实验,探讨高植物蛋白饲料中添加不同分子量水解鱼蛋白对大菱鲆Scophthalmus maximus L.[(16.05±0.03) g]幼鱼消化能力的影响。分别在高植物蛋白饲料中添加5.4%超滤水解鱼蛋白(UF)、5.5%未经超滤水解鱼蛋白(FPH)、5.5%超滤截留水解鱼蛋白(RF),其均占饲料蛋白的10%,以及不添加水解蛋白(PP),以上各组鱼粉含量均为18%,对照组(FM)鱼粉含量为67.5%。研究结果表明, FM组的大菱鲆特定生长率与UF、FPH及PP组无显著差异(P>0.05);饲料效率、蛋白质效率和蛋白质沉积率在FM组与UF组无显著差异(P>0.05),但显著高于FPH、RF及PP组(P0.05). There was also no difference in feed efficiency (FE), protein efficiency ratio (PER), or protein productive value (PPV) between UF fish and FM fish (P>0.05). However FPH fish, RF fish, and PP fish displayed significantly lower FE, PER and PPV than FM fish did (P<0.05). The apparent digestibility coefficients (ADC) for the dry matter and protein of UF, FPH and RF fish were significantly higher than that of PP fish (P<0.05), but lower than that of FM fish (P<0.05). Between UF, FPH, and RF fish, the ADC for the dry matter and protein of UF was significantly higher than that of the latter two (P<0.05). The ADCs for 16 amino acids and taurine could be obviously affected by different dietary treatments (P<0.05). For most amino acids the ADC was the highest in FM fish and the lowest in PP fish among all the groups. The ADCs for cysteine and taurine exhibited opposite patterns between the fish protein hydrolysates-containing groups (UF, FPH and RF) and the fish protein hydrolysates-lacking groups (FM and PP). In conclusion, addition of UF and FPH to the high plant pro-tein diets could help increase the growth and feed utilization of the juvenile turbot;the ACD for dry matter, protein, and amino acids could be improved with FPH and UF

  11. Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps

    Chiam Tak; Cho Young-Rae

    2012-01-01

    Abstract Background Recent computational techniques have facilitated analyzing genome-wide protein-protein interaction data for several model organisms. Various graph-clustering algorithms have been applied to protein interaction networks on the genomic scale for predicting the entire set of potential protein complexes. In particular, the density-based clustering algorithms which are able to generate overlapping clusters, i.e. the clusters sharing a set of nodes, are well-suited to protein co...

  12. Rice protein improvement through mutation breeding techniques, advance evaluations. Part of a coordinated programme on use of nuclear techniques for cereal grain protein improvement

    The use of gamma radiations for improving protein content of rice variety Pelita I/1 yielded mutants which were consistently high in protein level. However, only a very few have a good TD value. One is mutant 627/5-PsJ which has a good chance to be officially released because it is resistant to BPH, has high yielding potential, good eating quality, early maturity and high tolerance to salinity. The environmental conditions, such as heterogeneity of soil, amount of N-fertilizer and reproducibility of method for protein determination have significant effects on the variability of protein content in certain genotypes of rice. (author)

  13. Analysis of the role of the gene coding the Amyloid-Precursor Protein Binding Protein 1 (APP-BP1) in the radio-sensitivity of epidermoid carcinomas of the upper aero-digestive tract infected by the human papillomavirus; Analyse du role du gene codant l'Amyloid-Precursor Protein Binding Protein 1 (APP-BP1) dans la radiosensibilite des carcinomes epidermoides des voies aero-digestives superieures infectees par le papillomavirus humain

    Guihard, S.; Altmeyer, A.; Ramolu, L.; Macabre, C.; Abecassis, J.; Noel, G.; Jung, A.C. [Centre de lutte contre le cancer Paul-Strauss, 67 - Strasbourg (France)

    2010-10-15

    As the human papillomavirus (HPV) is at the origin of 25% of upper aero-digestive tract cancers, and as these tumours present an increased radio-sensitivity compared to other tumours, probably due to a greater transcriptional activity of p53, the authors report the study on the influence of a decrease of the expression of the APP-BP1 in these tumours which could favour a radio-induced apoptosis. By using a reverse transcriptase polymerase chain reaction (RT-PCR), they assessed the APP-BP1 expression levels as well as expression levels of transcriptions coding onco-proteins known to be over-expressed in HPV+ tumours. They compared the radio-sensitivities of HPV+ and HPV- cells, the first one appearing to be greater than the second one. Short communication

  14. Production of lupinus angustifolius protein hydrolysates with improved functional properties

    Lqari, Hassane; Pedroche, Justo; Girón-Calle, Julio; Vioque, Javier; Millán, Francisco

    2005-01-01

    Protein hydrolysates were obtained from lupin flour and from the purified globulin a-conglutin, and their functional properties were studied. Hydrolysis with alcalase for 60 minutes yielded degrees of hydrolysis ranging from 4% to 11% for lupin flour, and from 4% to 13% for a-conglutin. Protein solubility, oil absorption, foam capacity and stability, emulsifying activity, and emulsion stability of hydrolysates with 6% degree of hydrolysis were determined and compared with the properties...

  15. Uromodulin Exclusion List Improves Urinary Exosomal Protein Identification

    Hiemstra, Thomas F.; Charles, Philip D.; Hester, Svenja S.; Karet, Fiona E.; Lilley, Kathryn S

    2011-01-01

    Advances in mass spectrometry (MS) have encouraged interest in its deployment in urine biomarker studies, but success has been limited. Urine exosomes have been proposed as an ideal source of biomarkers for renal disease. However, the abundant urinary protein, uromodulin, cofractionates with exosomes during isolation and represents a practical contaminant that limits MS sensitivity. Uromodulin depletion has been attempted but is labor- and time-intensive and may remove important protein bioma...

  16. Seed protein improvement in cereals and grain legumes

    Plant breeders, molecular biologists, analytical chemists and nutritionists report on progress and achievements to date. High-lysine genotypes of maize, barley and sorghum have been produced. One high-protein variety of wheat is reported available for commercial use. Grain legumes already have high seed protein content but, compared to cereals, less of the total biological yield is available as seed, and intensive efforts are being made to produce genotypes with higher seed yield. Genetic variability is available from world germplasm collections and from induced-mutation programmes. In the basic sciences considerable advances are reported. Putative structural genes determining protein quality and quantity have been located on various chromosomes. In vitro synthesis of legume and cereal storage proteins and the isolation of some mRNA and the preparation and cloning of cDNA have been reported. Uptake and incorporation of N into amino acids, their synthesis into proteins, and interaction between protein and carbohydrate biosynthesis during seed development are discussed. Future prospects are considered including potential selection at the cellular rather than the whole plant level. In only a minority of the 64 papers is the use of nuclear techniques indicated specifically enough to justify individual entries in INIS

  17. Development of Improved Methods for Protein Separation and Identification

    Iskra Sainova

    2013-03-01

    Full Text Available For identification of proteins, able to connect specifically or non-specifically with peptide SCGN, protein material from RIN-5F rat insulinoma malignant cells and E. coli bacteria strains, both with inserted by transfection with recombinant vectors rat gene SCGN, was isolated. Subsequently, SCGN peptide was isolated, precipitated and incubated with lysates from rat pancreas and brain, known as anatomic organs with highest expression of SCGN gene. For determination of proteins with highest affinity to this target peptide, from both organs, it was separately mixed with both lysates, and the mixtures were subjected on separation on CNBr-Sepharose and GST-Agarose columns, respectively. GST-Agarose technique indicated some advantages in comparison with CNBr-Sepharose, connected mainly with higher yields of different protein types because of the escaped protein degradation influence of CNBr. The results supported the suggested in our previous studies abilities of protein SCGN to connect with cytoskeleton elements, in confirmation with some literature findings. On this base, a mechanism for indirect influence of this peptide on the control of cell growth and proliferation, has been proposed. Future studies are necessary in this direction

  18. Two-stage anaerobic and post-aerobic mesophilic digestion of sewage sludge: Analysis of process performance and hygienization potential.

    Tomei, M Concetta; Mosca Angelucci, Domenica; Levantesi, Caterina

    2016-03-01

    Sequential anaerobic-aerobic digestion has been demonstrated to be effective for enhanced sludge stabilization, in terms of increased solid reduction and improvement of sludge dewaterability. In this study, we propose a modified version of the sequential anaerobic-aerobic digestion process by operating the aerobic step under mesophilic conditions (T=37 °C), in order to improve the aerobic degradation kinetics of soluble and particulate chemical oxygen demand (COD). Process performance has been assessed in terms of "classical parameters" such as volatile solids (VS) removal, biogas production, COD removal, nitrogen species, and polysaccharide and protein fate. The aerobic step was operated under intermittent aeration to achieve nitrogen removal. Aerobic mesophilic conditions consistently increased VS removal, providing 32% additional removal vs. 20% at 20 °C. Similar results were obtained for nitrogen removal, increasing from 64% up to 99% at the higher temperature. Improved sludge dewaterability was also observed with a capillary suction time decrease of ~50% during the mesophilic aerobic step. This finding may be attributable to the decreased protein content in the aerobic digested sludge. The post-aerobic digestion exerted a positive effect on the reduction of microbial indicators while no consistent improvement of hygienization related to the increased temperature was observed. The techno-economic analysis of the proposed digestion layout showed a net cost saving for sludge disposal estimated in the range of 28-35% in comparison to the single-phase anaerobic digestion. PMID:26760266

  19. Using of digestate of agricultural biogas stations

    VERNER, Dušan

    2010-01-01

    This work deals with problems of agricultural biogas stations with the focus on using of final product of anaerobic fermentation, digestate, on agricultural soil. It evaluates its fertilizing effect in comparison to industrial fertilizers. The results showed that the fertilizing effect can improve economy of growing plants, however it depends on quality of digestate, constitution of base input material and technology of processing. It is not possible to use digestate anytime, it depends on gr...

  20. Improving microbial protein synthesis in the rumen of sheep fed fresh tofu waste by crude tannin extract of Acacia mangium

    Elizabeth Wina

    2012-10-01

    Full Text Available Tannin can be found in many tropical plants and the presence of tannin may reduce the nutritional value of feed. However, it can give beneficial effect as it protects the protein from its excessive degradation in the rumen. Tofu waste is abundant in a country, including Indonesia, where tofu is produced widely. A feeding trial on sheep to study the effect of tannin on microbial protein synthesis and condition of rumen fermentation, digestibility and N retention of feed containing tofu waste was conducted. Fifteen sheep were allocated to one of 3 treatments, i.e: 1 control treatment, feed without tannin, 2 feed + tannin treatment and 3 feed + tannin + polyethylene glycol (PEG treatment. The sheep was placed in the individual metabolism cage. They were fed with treatment feed for 14 days and then, the following 7 days, faeces and urine were collected. At the end of the treatment, rumen fluid was taken from each sheep before and after feeding. Rumen parameter (pH, ammonia, SCFA, protozoa and microbial protein synthesis, digestibility, nitrogen retention were observed. Results showed that inclusion of 4% tannin in the feed depressed ammonia production in the rumen of sheep before and 3 hours after morning feeding. Total SCFA and individual SCFA were not different among treatments. Tannin did not affect daily feed intake. Tannin lowered the dry matter, organic matter and protein digestibilities but it significantly reduced ADF digestibility (P < 0.05 and tended to reduce NDF digestibility (P < 0.1. However, tannin increased the microbial protein synthesis. PEG addition was expected to bind tannin and alleviate the negative effect of tannin.

  1. Ileal, colonic and total tract nutrient digestibility in dogs (Canis familiaris) compared with total tract digestibility in mink (Neovison vison)

    Tjernsbekk, Maria Therese; Tauson, Anne-Helene; Ahlstrøm, Øystein

    2014-01-01

    Mink (Neovison vison) was studied as a model for the determination of ileal crude protein (CP) and amino acid (AA) digestibility in dogs (Canis familiaris). Apparent ileal digestibility (AID) and apparent colonic digestibility (ACD) in dogs and apparent total tract digestibility (ATTD) in dogs and...... found between methods for digestibility of CP and most AA (p < 0.01) and for AA ranking with respect to digestibility level (p < 0.001). In dogs, ether extract digestibility was approximately 96% at all sites, while DM, starch and total carbohydrate digestibility increased from ileal to faecal level (p...

  2. Effects of supplementary urea-minerals lick block on the kinetics of fibre digestion, nutrient digestibility and nitrogen utilization of low quality roughages

    WU Yue-ming; HU Wei-lian; LIU Jian-xin

    2005-01-01

    Three yearling lambs with a rumen cannula were used to investigate the effects of supplementation with an urea-minerals lick block (ULB) on the kinetics ofruminal fibre digestion, nutrient digestibility and nitrogen (N) utilization of rice straw (RS), ammonia bicarbonate (AB)-treated RS (ABRS) and hay prepared from natural pasture. The digestibility of dry matter and organic matter of RS increased by 13.1% and 12.7% (P<0.05) when the diet was supplemented with ULB, and approached to that of ABRS, indicating that the effect of ULB on digestibility of RS is similar to that of AB treatment. The digestibility of ABRS was slightly improved by the ULB feeding. Nitrogen retention was highest in lambs fed on ABRS alone, followed by hay with ULB, and was lowest in animals fed on RS with ULB. However, both the amount and proportion of N retention to N intake were enhanced by ULB supplementation to lambs fed on hay. The proportion of N retained to N digested decreased due to ULB supplementation to lambs fed on RS or ABRS. Supplementing ULB did not greatly influence the rumen degradation of either dry matter or crude protein in each of the three diets. RS and hay had similar values in the potential extent of digestion (PED) and digestion rate of PED (kd) of fibrous materials, but the discrete lag time for RS was lower than that for hay. The AB treatment significantly increased the PED (P<0.05) and kd (P<0.05) of RS. Neither the PED nor kd for RS and ABRS was influenced by ULB supplementation, but the kd for hay significantly increased due to ULB. The lag time for hay was also shortened by the ULB feeding. The ULB improved the digestion of fibre in the rumen of lambs fed on low quality roughage. It is inferred that while ULB is effective in increasing nutrient digestibility of low quality roughages by improving ruminal fibre digestion. A synchronized supply of N and energy to rumen microbes should be considered to improve the efficiency of N utilization when the basal

  3. Nanostructured microfluidic digestion system for rapid high-performance proteolysis

    Cheng, Gong; Hao, Si-Jie; Yu, Xu; Zheng, Si-Yang

    2015-01-01

    A novel microfluidic protein digestion system with nanostructured and bioactive inner surface was constructed by an easy biomimetic self-assembly strategy for rapid and effective proteolysis in 2 minutes, which is faster than the conventional overnight digestion methods. It is expected that this work would contribute to rapid online digestion in future high-throughput proteomics.

  4. Site and extent of amino acid digestion in dairy cattle fed with corn and its byproducts

    Reginaldo Nassar Ferreira

    2015-02-01

    Full Text Available The study was conducted to evaluated the site and extent of dry matter (DM, crude protein (CP, methionine (Met, lysine (Lys, and threonine (Thr digestion of corn and byproducts obtained from corn germ mixed with different amounts of extruded or non-extruded ether extract (EE in dairy cattle. Treatments consisted in eight types of feed and two processing in a 4 × 2 factorial design. There were four feeds: corn grain cracked (Corn, corn germ meal with 1% EE (CG1, corn germ meal with 7% EE (CG7, and corn germ meal with 10% EE (CG10. The feeds were processed in one of two ways: extruded (Ex and not extruded. In situ techniques were used to determine DM, CP, Met, Lys, and Thr partial and total tract digestion. A basic diet was compounded of corn germ meal, soybean meal and coastcross hay in a 70:30 roughage to concentrate ratio. There was no interaction (P>0.05 between feeds and processing method. Extrusion improved (P0.05 for corn and corn germ meal mixed with 7 and 10% EE, regardless of EE processing method. The CP total tract digestibility of corn germ meal with 1% nonextruded EE was 16.62% higher (P<0.05 than that of the extruded form. The best total CP digestibility was obtained for corn germ meal with 7% EE, independently of the processing method. The effects of EE processing method on partial and total digestibility differed between amino acid. Corn and corn byproduct extrusion may improve dry matter digestibility, but do not necessarily influence crude protein digestion. Ruminal and intestinal digestibility of Met, Lys, and Thr depends on both feed type and processing method. Therefore, amino acid availability should be considered individually.

  5. Engineering Digestion: Multiscale Processes of Food Digestion.

    Bornhorst, Gail M; Gouseti, Ourania; Wickham, Martin S J; Bakalis, Serafim

    2016-03-01

    Food digestion is a complex, multiscale process that has recently become of interest to the food industry due to the developing links between food and health or disease. Food digestion can be studied by using either in vitro or in vivo models, each having certain advantages or disadvantages. The recent interest in food digestion has resulted in a large number of studies in this area, yet few have provided an in-depth, quantitative description of digestion processes. To provide a framework to develop these quantitative comparisons, a summary is given here between digestion processes and parallel unit operations in the food and chemical industry. Characterization parameters and phenomena are suggested for each step of digestion. In addition to the quantitative characterization of digestion processes, the multiscale aspect of digestion must also be considered. In both food systems and the gastrointestinal tract, multiple length scales are involved in food breakdown, mixing, absorption. These different length scales influence digestion processes independently as well as through interrelated mechanisms. To facilitate optimized development of functional food products, a multiscale, engineering approach may be taken to describe food digestion processes. A framework for this approach is described in this review, as well as examples that demonstrate the importance of process characterization as well as the multiple, interrelated length scales in the digestion process. PMID:26799793

  6. Ruminal degradability and intestinal digestibility of individual amino acids in mixed diets with different crude protein levels measured by the modified in vitro three-step and mobile nylon bag technique.

    Gao, Wei; Zhang, Bowen; Lv, Bo; Liu, Chenli; Chen, Daofu

    2016-04-01

    The ruminal degradability and intestinal digestibility of dry matter (DM), crude protein (CP) and amino acids (AA) in three total mixed rations with different CP levels were estimated using the modified in vitro three-step procedure (TSP) and mobile nylon bag (MNB) technique on growing lambs. The ruminal effective degradability of DM and CP did not respond with increasing dietary CP level. However, the intestinal digestibility of DM was significantly increased with increasing dietary CP level estimated by TSP (P micro-organisms, while tyrosine was the most anti-degradable AA among the samples. The ruminal AA degradability exhibited no significant differences except for threonine, tryptophan, alanine, aspartic acid and proline for the three diets. Similarly, only a few AAs (i.e. histidine, methionine, tryptophan, aspartic acid and cysteine in TSP; histidine, tryptophan, aspartic acid and serine in MNB) had significant differences in their intestinal digestibility; in addition, values of MNB were lower than that of the TSP method, indicating that intestinal digestibility of DM seems to be overestimated in TSP, while that of CP might be overestimated in the MNB method. PMID:26559908

  7. Conversion of protein kinase C from a Ca2+-dependent to an independent form of phorbol ester-binding protein by digestion with trypsin

    Tryptic fragments of protein kinase C containing the kinase (45 KDa) and phorbol ester-binding activity (38 KDa) were separated by Mono O column chromatography. The purified phorbol ester-binding fragment exhibits a higher affinity for phosphatidylserine than the native enzyme but comparable Kd for [3H]phorbol 12,13-dibutyrate as the native enzyme. This proteolytic fragment binds phorbol ester equally efficient either in the presence or absence of Ca2+ and the addition of the kinase fragment did not restore the Ca2+-requirement for the binding. These results indicate that protein kinase C is composed of two functionally distinct units which can be expressed independently after limited proteolysis with trypsin

  8. An improved Coomassie Brilliant Blue (CBB R-250) staining to proteins in gels

    2002-01-01

    An improved CBB staining with higher sensitivity than that of the typical CBB staining was reported. The main improvement was using a fixing step of 25% trichloroacetic acid (TCA) before CBB staining. For most proteins studied, the sensitivity of the improved CBB staining was about twice as high as that of the typical method. For basic and low molecular weight proteins such as ribosomal proteins, the sensitivity of this improved staining method was about 3.5-28 times that of the typical method. It was speculated that the improved procedure would be suitable for exact quantitative analysis of proteins fractionated by SDS-PAGE, especially for basic and low molecular weight proteins. On the other hand, this new modified method might be also applied to multidisciplinary studies, such as biological researches and nuclear sciences.

  9. An improved Coomassie Brilliant Blue(CBB R—250) Staining To proteins in gels

    ZHOUZhi-Dong; LIUWang-Yi; 等

    2002-01-01

    An improved CBB staining with higher sensitivity than that of the typical CBB staining was reported.The main improvement was using a fixing step of 25% trichloroacetic acid(TCA) before CBB staining.For most proteins studied,the sensitivity of the improved CBB staining was about twice as high as that of the typical method.For basic and low molecular weight proteins such as ribosomal proteins,the sensitivity of this improved staining method was about 3.5-28 times that of the typical method.It was speculated that the improved procedure would be suitable for exact quantitative analysis of proteins fractionated by SDS-PAGE,especially for basic and low molecular weight proteins.On the other hand,this new modified method might be also applied to multidisciplinary studies,such as biological researches and nuclear sciences.

  10. Heat-treatment reduces anti-nutritional phytochemicals and maintains protein quality in genetically improved hulled soybean flour

    Ariela Werneck de Carvalho

    2013-06-01

    Full Text Available The soybean is a protein source of high biological value. However, the presence of anti-nutritional factors affects its protein quality and limits the bioavailability of other nutrients. The effect of heat-treatment, 150 ºC for 30 minutes, on hulled and hull-less soybean flour from the cultivar UFVTN 105AP on urease, trypsin inhibitor activity, protein solubility, amino acid profile, and in vivo protein quality was investigated. The treatment reduced the trypsin inhibitor activity and urease, but it did not affect protein solubility. Protein Efficiency Coefficient (PER values of the flours were similar, and the PER of the hull-less soybean flour did not differ from casein. The Net Protein Ratio (NPR did not differ between the experimental groups. The True Digestibility (TD of the flours did not differ, but both were lower in casein and the Protein Digestibility Corrected Amino Acid Score (PDCCAS was lower than the TD, due to limited valine determined by the chemical score. Therefore, the flours showed reduced anti-nutritional phytochemicals and similar protein quality, and therefore the whole flours can be used as a source of high quality protein.

  11. Use of wheat and maize protein mutants in breeding for improved protein quantity and quality

    Selected offspring progenies (50 mutant lines) originating from mutation experiments with hexaploid wheat (cv. Bezostaya 1) were analysed for induced heritable variation in protein content, lysine content, grain yield and protein and lysine yields. Ten of these mutant lines were crossed with 11 local varieties. The protein and lysine contents were measured in the progenies of these crossings. The data showed better correlations of grain yield with protein and lysine yields than the protein and lysine contents with their corresponding yields. F1 seeds showed higher lysine and protein contents than local varieties. Data with maize showed that: (1) the total endosperm protein content of modified opaque-2 types increases with an increase in the degree of normalization; (2) the lysine content in dry matter and protein in normalized o2 kernels usually decreases with the increasing degree of normalization; (3) the lysine content in protein of modified o2 kernels, is, in general, satisfactory up to the normalization of about 50% of endosperm. A desirable modification of o2 endosperm within line A632o2 was selected and crossed with o2 lines. Most of the tested hybrids had a good protein quality, but endosperm modification was not evident in all hybrids. The o2 gene was incorporated into high protein backgrounds. Besides a high protein content and quality, some of the hybrids tested had a comparable or higher yield than the o2 check. (author)

  12. Chia Seed Shows Good Protein Quality, Hypoglycemic Effect and Improves the Lipid Profile and Liver and Intestinal Morphology of Wistar Rats.

    da Silva, Bárbara Pereira; Dias, Desirrê Morais; de Castro Moreira, Maria Eliza; Toledo, Renata Celi Lopes; da Matta, Sérgio Luis Pinto; Lucia, Ceres Mattos Della; Martino, Hércia Stampini Duarte; Pinheiro-Sant'Ana, Helena Maria

    2016-09-01

    Chia has been consumed by the world population due to its high fiber, lipids and proteins content. The objective was to evaluate the protein quality of chia untreated (seed and flour) and heat treated (90 °C/20 min), their influence on glucose and lipid homeostasis and integrity of liver and intestinal morphology of Wistar rats. 36 male rats, weanling, divided into six groups which received control diet (casein), free protein diet (aproteic) and four diet tests (chia seed; chia seed with heat treatment; chia flour and chia flour with heat treatment) for 14 days were used. The protein efficiency ratio (PER), net protein ratio (NPR) and true digestibility (TD) were evaluated. The biochemical variables and liver and intestinal morphologies of animals were determined. The values of PER, NPR and TD did not differ among the animals that were fed with chia and were lower than the control group. The animals that were fed with chia showed lower concentrations of glucose; triacylglycerides, low-density lipoprotein cholesterol and very low-density lipoprotein and higher high-density lipoprotein cholesterol than the control group. The liver weight of animals that were fed with chia was lower than the control group. Crypt depth and thickness of intestinal muscle layers were higher in groups that were fed with chia. The consumption of chia has shown good digestibility, hypoglycemic effect, improved lipid and glycemic profiles and reduced fat deposition in liver of animals, and also promoted changes in intestinal tissue that enhanced its functionality. PMID:27193017

  13. 不同热处理对牛奶乳清蛋白消化的影响%Effects of Various Heat Treatments on Digestibility of Milk Whey Proteins

    李倩; 李艳莉; 田晓宇; 霍贵成

    2012-01-01

    Demineralised whey powder is the major ingredient of formula for sale in market which was obtained by repeated heating and spray drying. In order to study the protein denaturation after repeat heating as well as the impact on the digestibility, HPLC (high performance liquid chromatography) was applied to determine the α-lactalbumin and β-1actoglobulin denaturation rate in different heat treatment of whey protein, and then pepsin-trypsin (two step method) was applied to determine the in vitro digestibility of different denatured whey protein. The results show that there is a positive correlation between heating and the whey protein denaturation rate, the higher heating temperature, the longer time, the greater the rate of whey protein denaturation, the lower digestibility. The digestibility of demineralised whey powder is only 65.25%, which is not conducive to the baby's digestion and absorption.%反复加热喷雾干燥所得的脱盐乳清粉是目前市售的婴儿配方奶粉中主要的配料,为了了解蛋白质在反复加热后的变性情况以及对消化率的影响,采用高效液相色谱法测定不同热处理的乳清蛋白中α-乳白蛋白和β-乳球蛋白的变性率,然后通过胃蛋白酶-胰蛋白酶两步法测定了不同变性乳清蛋白的体外消化率。结果表明加热对乳清蛋白变性率是正相关,加热温度越高,时间越长,乳清蛋白变性率越大,消化率也越低。脱盐乳清粉的消化率仅为65.25%,不利于婴儿的消化吸收。

  14. Lactobacillus casei Is Able To Survive and Initiate Protein Synthesis during Its Transit in the Digestive Tract of Human Flora-Associated Mice

    Oozeer, R; Goupil-Feuillerat, N.; Alpert, C A; van de Guchte, M; Anba, J.; Mengaud, J; Corthier, G

    2002-01-01

    Live Lactobacillus casei is present in fermented dairy products and has beneficial properties for human health. In the human digestive tract, the resident flora generally prevents the establishment of ingested lactic acid bacteria, the presence of which is therefore transient. The aim of this work was to determine if L. casei DN-114 001 survives during transit and how this bacterium behaves in the digestive environment. We used the human flora-associated (HFA) mouse model. L. casei DN-114 001...

  15. Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction

    Hulsman, M.; Reinders, M.J.T.; De Ridder, D.

    2008-01-01

    In recent years, more and more high-throughput data sources useful for protein complex prediction have become available (e.g., gene sequence, mRNA expression, and interactions). The integration of these different data sources can be challenging. Recently, it has been recognized that kernel-based cla

  16. potentially pathogenic gastrointestinal microorganisms (ID 2972), improved lactose digestion (ID 2972) and increasing IL-10 production (ID 2973) (further assessment) pursuant to Article 13(1) of Regulation (EC) No 1924/2006

    Tetens, Inge

    Lactobacillus paracasei CNCM I-1688 and Lactobacillus salivarius CNCM I-1794 and reduction of gastro-intestinal discomfort, decreasing potentially pathogenic gastro-intestinal microorganisms, improved lactose digestion and increasing IL-10 production. The food constituent that is the subject of the health......-intestinal discomfort, is a beneficial physiological effect for the general population. The claimed effect, decreasing potentially pathogenic gastro-intestinal microorganisms, might be a beneficial physiological effect for the general population. The claimed effect, improved lactose digestion, is a beneficial...... physiological effect for individuals with lactose maldigestion. No human intervention studies were provided from which conclusions could be drawn for the scientific substantiation of the above-mentioned claims. On the basis of the data provided, the Panel concludes that a cause and effect relationship has not...

  17. Impact of transgenic oilseed rape expressing oryzacystatin-1 (OC-1) and of insecticidal proteins on longevity and digestive enzymes of the solitary bee Osmia bicornis.

    Konrad, Roger; Connor, Melanie; Ferry, Natalie; Gatehouse, Angharad M R; Babendreier, Dirk

    2009-04-01

    The risk that insect-resistant transgenic plants may pose for solitary bees was assessed by determining longevity of adult Osmia bicornis (O. rufa) chronically exposed to transgenic oilseed rape expressing oryzacystatin-1 (OC-1) or to the purified insecticidal proteins recombinant rOC-1, Kunitz soybean trypsin inhibitor (SBTI), Galanthus nivalis agglutinin (GNA), or Bacillus thuringiensis toxin Cry1Ab dissolved in sugar solution (at 0.01 and 0.1%, w:v, Cry1Ab only at 0.01%). Compared to control bees, longevity was significantly reduced by SBTI and GNA at both concentrations and by rOC-1 at 0.1%, but not by Cry1Ab or rOC-1 at 0.01%. Longevity on the OC-1 oilseed rape was not significantly different from the control plants. The effects of SBTI and rOC-1 on longevity were investigated through characterization of the digestive proteinases of O. bicornis and analysis of the response in proteinase profiles to ingestion of these proteinase inhibitors. A relatively complex profile of at least four types of soluble proteolytic enzymes was identified. Serine proteinases were found to be predominant, with metallo and especially cysteine proteinases making a smaller albeit significant contribution. The compensatory response to in vivo enzyme inhibition was similar for SBTI and rOC-1 although less pronounced for rOC-1. It consisted of a non-specific overproduction of native proteinases, both sensitive and insensitive, and the induction of a novel aspartic proteinase. PMID:19135058

  18. The effects of in ovo feeding arginine, beta-hydroxy-beta-methyl-butyrate, and protein on jejunal digestive and absorptive activity in embryonic and neonatal turkey poults.

    Foye, O T; Ferket, P R; Uni, Z

    2007-11-01

    In ovo feeding, injecting nutrients into the amnion of the avian embryo, may enhance jejunal nutrient uptake, activity of the intestinal enzymes, and posthatch growth. This hypothesis was tested in the following in ovo feeding (IOF) experiments. In experiment 1, 400 eggs were evenly distributed among 4 nutritional treatments at 23 d of embryonic development (23E) and administered 1 of 4 treatments as a 2 x 2 factorial arrangement of arginine (ARG 0, 0.7%) and beta-hydroxy-beta-methyl-butyrate (HMB 0, 0.1%). Tissues were assayed for maltase, sucrase, and leucine aminopeptidase (LAP) at 25E, hatch, and 3, 7, and 14 d. In experiment 2, all IOF procedures were repeated and treatments were administered at 21E: injected or noninjected control, 21% egg white protein (EWP), 21% EWP + 0.1% HMB. In experiment 3, two hundred eggs were evenly distributed among the following treatments at 23E: noninjected control or 0.7% ARG + 0.1% HMB + 21% EWP. Jejunal samples were assayed for glucose or alanine uptake at 23E, 25E, and hatch (experiment 2), and hatch and 7 d (experiment 3), respectively. All poults were fed a turkey starter diet ad libitum immediately upon hatching. There was a highly significant HMB x ARG interaction on jejunal sucrase, maltase, and LAP activities at 25E and 14 d. Poults in ovo (IO) fed HMB + ARG had approximately a 2- to 3-fold increase in jejunal sucrase, maltase, and LAP activities at 25E, and a 3-fold increase at 14 d, over other treatments. Poults IO fed EWP + HMB (experiment 2) had enhanced glucose uptake at 25E, whereas poults IO fed ARG + HMB + EWP (experiment 3) had enhanced alanine uptake at hatch and 7 d. These studies demonstrate that IOF ARG, HMB, and EWP may enhance jejunal nutrient uptake and digestion in turkeys. PMID:17954584

  19. Níveis de lisina digestível em rações, utilizando-se o conceito de proteína ideal, para suínos machos castrados de alto potencial genético dos 15 aos 30 kg Dietary digestible lysine levels, using the ideal protein concept, for barrows with high genetic potential from 15 to 30 kg

    Márvio Lobão Teixeira de Abreu

    2006-06-01

    , were used to evaluate the effect of digestible lysine levels, using the ideal protein concept, on the performance and carcass composition. The treatments were composed of a basal diet containing 19.46% crude protein and 3,280 kcal of ME/kg, that were supplemented with different levels of HCl-L-Lysine, resulting in diets with 0.90, 1.00, 1,10, and 1.20% of digestible lysine. The diets were supplemented with increasing levels of synthetic amino acids, resulting in diets with ratios of methionine + cystine, threonine, tryptophan and valine:lysine constant in 60, 60, 19 e 69%, respectively, based on the true digestibility. No treatment effects on feed intake, concentration of plasma urea and percentages of water, protein and fat in the carcass were observed in this trial. However, significant quadratic effects on weight gain and feed:gain ratio with quadractic maximum and minimum of 1.10 and 1.12% of lysine, respectively, were detected. Intake of digestible lysine increased linearly among treatments. The depositions of protein and fat in the carcass answered quadractily with quadratic maxima at 1.12 and 1.08%, respectively. The level of digestible lysine that provided the best results of performance and carcass characteristics of barrows with high genetic potential from 15 to 30 kg was of 1.12% of true digestible lysine, corresponding to a digestible lysine intake of 12.03 g/day (3.42 g of Lys/Mcal of ME.

  20. Improving protein quality of soybean through induced mutations

    Soybean is one of the most economical and nutritious food packed with basic nutrients that combat diseases stemming from mal- and under-nutrition. Despite its rich nutritional profile, use of soybean in food has been limited because soybean proteins are often associated with compounds, which could exert a negative impact on the nutritional quality of the protein. Trypsin inhibitor (TI) is one of the important anti-nutritional factors that exert negative effect by causing growth inhibition. Soybean cultivar VLS-2 was irradiated with 250 Gy gamma rays in a gamma cell (200) with 60Co source installed at BARC to induce mutations for low trypsin inhibitor content. Three mutants with lower levels of TI content were identified and can be utilized for developing elite varieties of soybean. (author)

  1. Improvement of AOAC Official Method 984.27 for the determination of nine nutritional elements in food products by Inductively coupled plasma-atomic emission spectroscopy after microwave digestion: single-laboratory validation and ring trial.

    Poitevin, Eric; Nicolas, Marine; Graveleau, Laetitia; Richoz, Janique; Andrey, Daniel; Monard, Florence

    2009-01-01

    A single-laboratory validation (SLV) and a ring trial (RT) were undertaken to determine nine nutritional elements in food products by inductively coupled plasma-atomic emission spectroscopy in order to improve and update AOAC Official Method 984.27. The improvements involved optimized microwave digestion, selected analytical lines, internal standardization, and ion buffering. Simultaneous determination of nine elements (calcium, copper, iron, potassium, magnesium, manganese, sodium, phosphorus, and zinc) was made in food products. Sample digestion was performed through wet digestion of food samples by microwave technology with either closed or open vessel systems. Validation was performed to characterize the method for selectivity, sensitivity, linearity, accuracy, precision, recovery, ruggedness, and uncertainty. The robustness and efficiency of this method was proved through a successful internal RT using experienced food industry laboratories. Performance characteristics are reported for 13 certified and in-house reference materials, populating the AOAC triangle food sectors, which fulfilled AOAC criteria and recommendations for accuracy (trueness, recovery, and z-scores) and precision (repeatability and reproducibility RSD and HorRat values) regarding SLV and RT. This multielemental method is cost-efficient, time-saving, accurate, and fit-for-purpose according to ISO 17025 Norm and AOAC acceptability criteria, and is proposed as an improved version of AOAC Official Method 984.27 for fortified food products, including infant formula. PMID:19916387

  2. Improved protein structure selection using decoy-dependent discriminatory functions

    Levitt Michael; Fain Boris; Wang Kai; Samudrala Ram

    2004-01-01

    Abstract Background A key component in protein structure prediction is a scoring or discriminatory function that can distinguish near-native conformations from misfolded ones. Various types of scoring functions have been developed to accomplish this goal, but their performance is not adequate to solve the structure selection problem. In addition, there is poor correlation between the scores and the accuracy of the generated conformations. Results We present a simple and nonparametric formula ...

  3. Antimicrobial treatment reduces intestinal microflora and improves protein digestive capacity without changes in villous structure in weanling pigs

    Thymann, Thomas; Sørensen, Kristina U.; Hedemann, Mette S.;

    2007-01-01

    The immediate post-weaning period is often associated with gut malfunction and diarrhoea for young pigs. Administration of antimicrobials remains an effective way to control weaning diarrhoea but it remains unclear how they affect gut physiology and microbiology although this is a prerequisite fo...

  4. Effects of protein conformation in docking: improved pose prediction through protein pocket adaptation

    Jain, Ajay N.

    2009-01-01

    Computational methods for docking ligands have been shown to be remarkably dependent on precise protein conformation, where acceptable results in pose prediction have been generally possible only in the artificial case of re-docking a ligand into a protein binding site whose conformation was determined in the presence of the same ligand (the “cognate” docking problem). In such cases, on well curated protein/ligand complexes, accurate dockings can be returned as top-scoring over 75% of the tim...

  5. Xylanase supplementation of a wheat-based diet improved nutrient digestion and mRNA expression of intestinal nutrient transporters in broiler chickens infected with Clostridium perfringens.

    Guo, Shuangshuang; Liu, Dan; Zhao, Xu; Li, Changwu; Guo, Yuming

    2014-01-01

    Necrotic enteritis caused by Clostridium perfringens has become prevalent in the European Union due to the withdrawal of antibiotics in poultry feed. In an experiment with a 2 × 2 factorial arrangement, 336 one-day-old male broiler chicks (Ross 308) were assigned to 4 groups with or without C. perfringens challenge and fed wheat-based diets supplemented with or without xylanase at 5,500 U/kg of diet. The study aimed to investigate effects of xylanase addition on growth performance as well as nutrient digestion and absorption of C. perfringens-infected broilers. Before challenge (d 0-14), xylanase-supplemented birds had greater ADG and lower feed conversion ratio (FCR; P Clostridium perfringens infection decreased AME values and apparent ileal digestibility of DM of diets (P perfringens infection (P perfringens infection and elevated apparent ileal digestibility of CP and mRNA expression of nutrient transporters in challenged birds. PMID:24570428

  6. Modelling anaerobic co-digestion in Benchmark Simulation Model No. 2: Parameter estimation, substrate characterisation and plant-wide integration.

    Arnell, Magnus; Astals, Sergi; Åmand, Linda; Batstone, Damien J; Jensen, Paul D; Jeppsson, Ulf

    2016-07-01

    Anaerobic co-digestion is an emerging practice at wastewater treatment plants (WWTPs) to improve the energy balance and integrate waste management. Modelling of co-digestion in a plant-wide WWTP model is a powerful tool to assess the impact of co-substrate selection and dose strategy on digester performance and plant-wide effects. A feasible procedure to characterise and fractionate co-substrates COD for the Benchmark Simulation Model No. 2 (BSM2) was developed. This procedure is also applicable for the Anaerobic Digestion Model No. 1 (ADM1). Long chain fatty acid inhibition was included in the ADM1 model to allow for realistic modelling of lipid rich co-substrates. Sensitivity analysis revealed that, apart from the biodegradable fraction of COD, protein and lipid fractions are the most important fractions for methane production and digester stability, with at least two major failure modes identified through principal component analysis (PCA). The model and procedure were tested on bio-methane potential (BMP) tests on three substrates, each rich on carbohydrates, proteins or lipids with good predictive capability in all three cases. This model was then applied to a plant-wide simulation study which confirmed the positive effects of co-digestion on methane production and total operational cost. Simulations also revealed the importance of limiting the protein load to the anaerobic digester to avoid ammonia inhibition in the digester and overloading of the nitrogen removal processes in the water train. In contrast, the digester can treat relatively high loads of lipid rich substrates without prolonged disturbances. PMID:27088248

  7. Food allergen digestibility: The influence on allergenicity

    Bøgh, Katrine Lindholm; Madsen, Charlotte Bernhard

    potential exist. Resistance to digestion is therefore a test parameter included in the safety assessment of the allergenic potential of novel proteins in genetically modified foods. In recent years, the association between resistance to digestion and allergenic potential has been challenged. When reviewing......Food allergy is a major health problem in the Western countries, affecting 3-8% of the population. What makes a dietary protein a food allergen has not yet been established, though several characteristics have been proposed to be shared by the food allergens. One of the features believed to be a...... existing data from digestibility studies on known food allergens, it becomes evident that food allergens do not necessarily resist digestion. However, the choice of assay conditions, the method used for detection of residual intact protein as well as fragments hereof greatly influences the outcome. Studies...

  8. Effect of Different Processing Methods on Anti-Nutrients Content and Protein Quality of Improved Lupin (Lupinus Albus L. Cultivar Seeds

    Mohamed Ahmed M. Omer

    2016-01-01

    Full Text Available Lupin seeds of genetically improved cultivar (Golo were subjected to different processing methods and investigated according to anti-nutritional factors content and protein quality. Results showed that tannin content of raw seeds was significantly increased in sprouted and debittered seeds before and after boiling but in fermented seeds it declined significantly. Phytate content was significantly decreased in all processed seeds with a significant reduction observed in germinated seeds. The reduction in Phytate as a result of processing was accompanied by a significant improvement in protein digestibility. The protein content of lupin seeds decreased in sprouted seeds and increased in fermented and debittered ones. Boiling of the seeds even the sprouted ones significantly increased the protein content compared to raw lupin seeds. In raw lupin seeds, globulins comprised the major fraction followed by glutelin. Debittered seeds characterized by high glutelin, fermented are characterized by high globulin while germinated characterized by both fractions. Most of the amino acids level was increased after processing of the seeds.

  9. Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity.

    Noah Ollikainen

    Full Text Available Interactions between small molecules and proteins play critical roles in regulating and facilitating diverse biological functions, yet our ability to accurately re-engineer the specificity of these interactions using computational approaches has been limited. One main difficulty, in addition to inaccuracies in energy functions, is the exquisite sensitivity of protein-ligand interactions to subtle conformational changes, coupled with the computational problem of sampling the large conformational search space of degrees of freedom of ligands, amino acid side chains, and the protein backbone. Here, we describe two benchmarks for evaluating the accuracy of computational approaches for re-engineering protein-ligand interactions: (i prediction of enzyme specificity altering mutations and (ii prediction of sequence tolerance in ligand binding sites. After finding that current state-of-the-art "fixed backbone" design methods perform poorly on these tests, we develop a new "coupled moves" design method in the program Rosetta that couples changes to protein sequence with alterations in both protein side-chain and protein backbone conformations, and allows for changes in ligand rigid-body and torsion degrees of freedom. We show significantly increased accuracy in both predicting ligand specificity altering mutations and binding site sequences. These methodological improvements should be useful for many applications of protein-ligand design. The approach also provides insights into the role of subtle conformational adjustments that enable functional changes not only in engineering applications but also in natural protein evolution.

  10. Improved functional overview of protein complexes using inferred epistatic relationships

    Ryan, Colm

    2011-05-23

    Abstract Background Epistatic Miniarray Profiling(E-MAP) quantifies the net effect on growth rate of disrupting pairs of genes, often producing phenotypes that may be more (negative epistasis) or less (positive epistasis) severe than the phenotype predicted based on single gene disruptions. Epistatic interactions are important for understanding cell biology because they define relationships between individual genes, and between sets of genes involved in biochemical pathways and protein complexes. Each E-MAP screen quantifies the interactions between a logically selected subset of genes (e.g. genes whose products share a common function). Interactions that occur between genes involved in different cellular processes are not as frequently measured, yet these interactions are important for providing an overview of cellular organization. Results We introduce a method for combining overlapping E-MAP screens and inferring new interactions between them. We use this method to infer with high confidence 2,240 new strongly epistatic interactions and 34,469 weakly epistatic or neutral interactions. We show that accuracy of the predicted interactions approaches that of replicate experiments and that, like measured interactions, they are enriched for features such as shared biochemical pathways and knockout phenotypes. We constructed an expanded epistasis map for yeast cell protein complexes and show that our new interactions increase the evidence for previously proposed inter-complex connections, and predict many new links. We validated a number of these in the laboratory, including new interactions linking the SWR-C chromatin modifying complex and the nuclear transport apparatus. Conclusion Overall, our data support a modular model of yeast cell protein network organization and show how prediction methods can considerably extend the information that can be extracted from overlapping E-MAP screens.

  11. Improved Proteomic Analysis Following Trichloroacetic Acid Extraction of Bacillus anthracis Spore Proteins

    Kaiser, Brooke LD; Wunschel, David S.; Sydor, Michael A.; Warner, Marvin G.; Wahl, Karen L.; Hutchison, Janine R.

    2015-08-07

    Proteomic analysis of bacterial samples provides valuable information about cellular responses and functions under different environmental pressures. Proteomic analysis is dependent upon efficient extraction of proteins from bacterial samples without introducing bias toward extraction of particular protein classes. While no single method can recover 100% of the bacterial proteins, selected protocols can improve overall protein isolation, peptide recovery, or enrich for certain classes of proteins. The method presented here is technically simple and does not require specialized equipment such as a mechanical disrupter. Our data reveal that for particularly challenging samples, such as B. anthracis Sterne spores, trichloroacetic acid extraction improved the number of proteins identified within a sample compared to bead beating (714 vs 660, respectively). Further, TCA extraction enriched for 103 known spore specific proteins whereas bead beating resulted in 49 unique proteins. Analysis of C. botulinum samples grown to 5 days, composed of vegetative biomass and spores, showed a similar trend with improved protein yields and identification using our method compared to bead beating. Interestingly, easily lysed samples, such as B. anthracis vegetative cells, were equally as effectively processed via TCA and bead beating, but TCA extraction remains the easiest and most cost effective option. As with all assays, supplemental methods such as implementation of an alternative preparation method may provide additional insight to the protein biology of the bacteria being studied.

  12. Anaerobic Digestion: Process

    Angelidaki, Irini; Batstone, Damien J.

    2011-01-01

    Organic waste may degrade anaerobically in nature as well as in engineered systems. The latter is called anaerobic digestion or biogasification. Anaerobic digestion produces two main outputs: An energy-rich gas called biogas and an effluent. The effluent, which may be a solid as well as liquid with...... very little dry matter may also be called a digest. The digest should not be termed compost unless it specifically has been composted in an aerated step. This chapter describes the basic processes of anaerobic digestion. Chapter 9.5 describes the anaerobic treatment technologies, and Chapter 9.......6 addresses the mass balances and environmental aspects of anaerobic digestion....

  13. 植物性蛋白饲料的猪消化能值预测研究%Estimation of Digestible Energy Values of Plant Protein Supplement in Pig

    李明元; 王康宁

    2009-01-01

    [Objective] The aim of the study was to establish the effective and accurate formulas for estimating the digestible energy (DE) values of plant protein supplement in pig. [Method] By difference method with different amount of alternative feeds (20%-50%), two 4×4 Latin-square-designed trials were taken on eight castrated male pigs [Yorkshire×Landrace×Neijiang pig, initial body-weight: (46±2) kg] to determine the apparent digestible energy (ADE) of the eight kinds of plant protein supplement commonly used in China, that is, corn gluten meal (sol.), soybean meal (sol.), fababean, pea, rapeseed meal (sol.), sesame meal (sol.), rapeseed meal(exp.) and cotton seed meal (sol.). [Result] (1) Fiber was the most important factor to estimate the ADE of plant protein supplement in pigs, and ADF was the best one. (2) The most effective equations were as below: (1) DE (kJ/kg DM) =14 741.86-185.01ADF+54.01SCHO+22.45CP (R2=0.988,RSD=67.9,P<0.01); (2) DE (kJ/kg DM) =22 223.26-209.58ADF+26.79SCHO-1.09GE (R2=0.989,RSD=66.9,P<0.01).[Conclusion] The accurate, practical and specific regression equations were established for DE prediction of plant protein supplement in pig.

  14. Combined electrical-alkali pretreatment to increase the anaerobic hydrolysis rate of waste activated sludge during anaerobic digestion

    Highlights: • Combined electrical-alkali pretreatment for improving sludge anaerobic digestion was proposed. • Combined process enhanced the cell lysis, biopolymers releases, and thus sludge disintegration. • Increased solubilization of sludge increased the anaerobic hydrolysis rate. • Increased solubilization does not always induce an improved anaerobic digestion efficiency. - Abstract: Pretreatment can be used prior to anaerobic digestion to improve the efficiency of waste activated sludge (WAS) digestion. In this study, electrolysis and a commonly used pretreatment method of alkaline (NaOH) solubilization were integrated as a pretreatment method for promoting WAS anaerobic digestion. Pretreatment effectiveness of combined process were investigated in terms of disintegration degree (DDSCOD), suspended solids (TSS and VSS) removals, the releases of protein (PN) and polysaccharide (PS), and subsequent anaerobic digestion as well as dewaterability after digestion. Electrolysis was able to crack the microbial cells trapped in sludge gels and release the biopolymers (PN and PS) due to the cooperation of alkaline solubilization, enhancing the sludge floc disintegration/solubilization, which was confirmed by scanning electron microscopy (SEM) analysis. Biochemical methane potential (BMP) assays showed the highest methane yield was achieved with 5 V plus pH 9.2 pretreatment with up to 20.3% improvement over the non-pretreated sludge after 42 days of mesophilic operation. In contrast, no discernible improvements on anaerobic degradability were observed for the rest of pretreated sludges, probably due to the overmuch leakage of refractory soluble organics, partial chemical mineralization of solubilized compounds and sodium inhibition. The statistical analysis further indicated that increased solubilization induced by electrical-alkali pretreatment increased the first-order anaerobic hydrolysis rate (khyd), but had no, or very slight enhancement on WAS ultimate

  15. Improvement of consumer properties of melted cheese applying vegetable protein

    Шевченко, Олена Євгеніївна

    2012-01-01

    This work is devoted to the development and merchandising evaluation of new combined melted cheese, applying vegetable ingredients, to enhance biological value, improve the nutritional properties and reduce cholesterol levels. The work includes the research of samples of developed melted cheese, their expert evaluation; study of merchandising quality properties of cheese, namely, rheological and organoleptic. The influence of the quantitative substitution of raw milk by the vegetable pr...

  16. An Improvement on the Protein Extraction Procedure from Eggshell Membrane

    Peng Ruo-ting; Guo Yulong

    2010-01-01

    @@ 1 Introduction Collagen is a frequently occurring protein found in poultry,livestock and human body,esp.in the hair,skin,bone cartilage,tendon and so on.It forms the strongly insoluble fibers and serves as connective tissue supporting materials.Nowadays it became one of the most important raw materials of bio-engineering materials which are widely used in various fields including cosmetics,biomedical and foods industries.With the outburst of multiple diseases from cows and pigs such as bovine spongiform encephalopathy(BSE),related authorities in different countries have estabhshed many restrictions on trading collagen from mammalians.Due to this ground scientists began to identify new resources of collagens.

  17. Improved anaerobic digestion of a thermally pretreated mixture of physicochemical sludge; broiler excreta and sugar cane wastes (SCW): Effect on organic matter solubilization, biodegradability and bioenergy production.

    Nava-Valente, Noemí; Alvarado-Lassman, Alejandro; Nativitas-Sandoval, Liliana S; Mendez-Contreras, Juan M

    2016-01-01

    Thermal pretreatment effect of a mixture of organic wastes (physicochemical sludge, excreta of broiler chickens and sugarcane wastes (SCW)) in the solubilization and biodegradability organic matter as well as bioenergy production by anaerobic digestion was evaluated. Two different mixtures of physicochemical sludge, excreta of broiler chickens and SCW (70%, 15%, 15% and 60%, 20%, 20% of VS, respectively) were treated at different temperatures (80 °C, 85 °C and 90 °C) and contact time (30, 60 and 90 min). Results indicate that, organic matter solubilization degree increased from 1.14 to 6.56%; subsequently, in the anaerobic digestion process, an increase of 50% in the volatile solids removal and 10% in biogas production was observed, while, retention time decreased from 23 up to 9 days. The results obtained were similar to pilot-scale. In both experimental scales it showed that the synergy produced by the simultaneous anaerobic digestion of different substrates could increase bioenergy production up to 1.3 L bio g(-1) VS removed and 0.82 L CH4 g(-1) VS removed. The treatment conditions presented in this study allow for large residue quantities to be treated and large bioenergy quantities to be produced (10% higher than during conventional treatment) without increasing the anaerobic digester volume. PMID:26819145

  18. INCREASING ANAEROBIC DIGESTION PERFORMANCE OF WASTEWATER WITH CO-DIGESTION USING DECANTER CAKE

    Thaniya Kaosol; Narumol Sohgrathok

    2014-01-01

    Low biogas production in the frozen seafood wastewater anaerobic digestion is observed due to the low organic and Total Solids (TS) contents in the wastewater. In this research the decanter cake will be used in the anaerobic co-digestion process to improve the biogas production rate. The effect of co-digestion and Hydraulic Retention Time (HRT) will be investigated using the continuously stirred tank reactors under anaerobic conditions. Moreover, the study determines the biogas production pot...

  19. Anaerobic digestion of solid material

    Vavilin, V.A.; Lokshina, L.Y.; Flotats, X.;

    2007-01-01

    A new multidimensional (3 and 2D) anaerobic digestion model for cylindrical reactor with non-uniform influent concentration distributions was developed to study the way in which mixing intensity affects the efficiency of continuous-flow anaerobic digestion. Batch experiments reported and simulated...... improve the continuous flow reactor performance at the relatively low influent methanogenic biomass concentration. In the continuously stirred tank reactor (CSTR) there are two steady states with and without methane production at slightly different values of initial methanogenic biomass concentration....... In the system, the threshold methanogenic biomass concentration existed because of inhibition by high VFA concentration. High methanogenic biomass concentration is required for efficient anaerobic digestion of MSW in order to avoid possible inhibition due to high VFA build-up. Thus, CSTR configuration might...

  20. Proteína bruta e energia digestível em dietas para alevinos de curimbatá (Prochilodus affins) Crude protein and digestible energy in the diets for curimbatá fingerlings (Prochilodus affins)

    Marcos Antonio Delmondes Bomfim; Eduardo Arruda Teixeira Lanna; Moacyr Antonio Serafini; Felipe Barbosa Ribeiro; Karine da Silva Pena

    2005-01-01

    Objetivando-se determinar as exigências de proteína bruta (PB) em função do nível de energia digestível (ED) da dieta para alevinos de curimbatá (Prochilodus affins), foram utilizados 256 peixes com peso inicial de 2,72 ± 0,11 g, mantidos em 32 aquários de 100 L, dotados de abastecimento de água, temperatura controlada e aeração individuais. O experimento foi realizado seguindo-se esquema fatorial 4 x 2 (quatro níveis de PB: 18,0; 22,0; 26,0; e 30,0%, combinados com dois níveis de ED: ...

  1. Improved protein surface comparison and application to low-resolution protein structure data

    Kihara Daisuke; Sael Lee

    2010-01-01

    Abstract Background Recent advancements of experimental techniques for determining protein tertiary structures raise significant challenges for protein bioinformatics. With the number of known structures of unknown function expanding at a rapid pace, an urgent task is to provide reliable clues to their biological function on a large scale. Conventional approaches for structure comparison are not suitable for a real-time database search due to their slow speed. Moreover, a new challenge has ar...

  2. Improved silicon nanowire field-effect transistors for fast protein-protein interaction screening.

    Lin, Ti-Yu; Li, Bor-Ran; Tsai, Sheng-Ta; Chen, Chien-Wei; Chen, Chung-Hsuan; Chen, Yit-Tsong; Pan, Chien-Yuan

    2013-02-21

    Understanding how proteins interact with each other is the basis for studying the biological mechanisms behind various physiological activities. Silicon nanowire field-effect transistors (SiNW-FETs) are sensitive sensors used to detect biomolecular interactions in real-time. However, the majority of the applications that use SiNW-FETs are for known interactions between different molecules. To explore the capability of SiNW-FETs as fast screening devices to identify unknown interacting molecules, we applied mass spectrometry (MS) to analyze molecules reversibly bound to the SiNW-FETs. Calmodulin (CaM) is a Ca(2+)-sensing protein that is ubiquitously expressed in cells and its interaction with target molecules is Ca(2+)-dependent. By modifying the SiNW-FET surface with glutathione, glutathione S-transferase (GST)-tagged CaM binds reversibly to the SiNW-FET. We first verified the Ca(2+)-dependent interaction between GST-CaM and purified troponin I, which is involved in muscle contraction, through the conductance changes of the SiNW-FET. Furthermore, the cell lysate containing overexpressed Ca(2+)/CaM-dependent protein kinase IIα induced a conductance change in the GST-CaM-modified SiNW-FET. The bound proteins were eluted and subsequently identified by MS as CaM and kinase. In another example, candidate proteins from neuronal cell lysates interacting with calneuron I (CalnI), a CaM-like protein, were captured with a GST-CalnI-modified SiNW-FET. The proteins that interacted with CalnI were eluted and verified by MS. The Ca(2+)-dependent interaction between GST-CalnI and one of the candidates, heat shock protein 70, was re-confirmed via the SiNW-FET measurement. Our results demonstrate the effectiveness of combining MS with SiNW-FETs to quickly screen interacting molecules from cell lysates. PMID:23235921

  3. Improvement of protein extraction from sunflower meal by hydrolysis with alcalase

    Yust, María del Mar; Pedroche, Joaquín; Megías, Cristina; Girón-Calle, Julio; Alaíz Barragán, Manuel; Millán, Francisco; Vioque, Javier

    2003-01-01

    Extraction of proteins from defatted sunflower meal has been improved by addition of the protease alcalase during alkaline extraction. This method offers several additional advantages as compared to the traditional alkaline extraction without alcalase, which is usually carried out after a sedimentation/flotation step to remove the lignocellulosic fraction. As compared to extraction without alcalase, addition of 0.1% (v/v) alcalase improved the yield of protein extraction from 57.5% to 8...

  4. Improvement of protein extraction from sunflower meal by hydrolysis with alcalase

    Vioque, J.; Millán, F.; Alaiz, M.; Girón-Calle, J.; Megías, C.; Pedroche, J.; Yust, M. M.

    2003-01-01

    Extraction of proteins from defatted sunflower meal has been improved by addition of the protease alcalase during alkaline extraction. This method offers several additional advantages as compared to the traditional alkaline extraction without alcalase, which is usually carried out after a sedimentation/flotation step to remove the lignocellulosic fraction. As compared to extraction without alcalase, addition of 0.1% (v/v) alcalase improved the yield of protein extraction from 57.5% to 87.4%, ...

  5. Molecular Strategies to Improve Protein Quality and Reduce Flatulence in Legumes: A Review

    de Lumen, Benito O.

    1992-01-01

    The application of recombinant DNA and related techniques to plants opened up the potential to improve agronomic characters. food processing traits and food quality properties of plants as food sources. This review focuses on molecular approaches to improving the protein quality and reducing flatulence in beans. Much is now known about the regulation of seed-specific expression and organization of seed storage protein genes. Several attempts have been made to increase the methionine content o...

  6. New opportunities for agricultural digestate valorization: current situation and perspectives

    Monlau, Florian; Sambusiti, Cécilia; Ficara, Elena; Aboulkas, A.; Barakat, Abdellatif; Carrère, Hélène

    2015-01-01

    In the agricultural sector of many European countries, biogas production through anaerobic digestion (AD) is becoming a very fast-growing market. Anaerobic digestion is a simple and robust process that biologically converts an organic matrix into biogas and digestate, the latter corresponding to the anaerobically non-degraded fraction. So far, digestate has been mostly used at farm-scales for improving soils or as fertilizer. However, its ever-increasing production induces problems related to...

  7. Proteínas do feijão preto sem casca: digestibilidade em animais convencionais e isentos de germes (germ-free Proteins of dehulled black beans: digestibility in conventional and germ-free animals

    Conceição Angelina dos Santos PEREIRA

    2002-01-01

    Full Text Available O feijão (Phaseolus vulgaris, L. é uma leguminosa de grande importância para a dieta da população brasileira. No entanto, um de seus maiores problemas é representado pelo baixo valor nutricional de suas proteínas, decorrente, por um lado, da sua baixa digestibilidade e, de outro, do teor e biodisponibilidade reduzidos de aminoácidos sulfurados. Com o objetivo de avaliar a digestibilidade das proteínas albumina e globulina do feijão preto sem casca, foram realizados ensaios biológicos com camundongos isentos de germes e convencionais e com ratos (Wistar, recém-desmamados, com idade de 21 a 25 dias. Avaliou-se ainda o Escore Químico Corrigido pela Digestibilidade da Proteína. A digestibilidade verdadeira no experimento com camundongos isentos de germes foi de 90,21 e 90,00%, no teste com camundongos convencionais foi de 85,53 e 86,73%, e no experimento com ratos foi de 82,62 e 68,53%, para albumina e globulina, respectivamente. O Escore Químico Corrigido pela Digestibilidade da Proteína foi de 61,00% para a albumina e 51,00% para a globulina. A digestibilidade determinada em animais isentos de germes foi superior aos valores encontrados em animais convencionais, sugerindo que a flora intestinal esteja contribuindo para elevar o teor de nitrogênio nas fezes dos animais convencionais, e, portanto, esteja sendo subestimada a digestibilidade verdadeira do feijão.The bean (Phaseolus vulgaris, L. is a legume of great importance in the Brazilian typical diet. Nevertheless, it presents a low protein quality due to its poor digestibility and low levels and bioavailability of its sulfur aminoacids. The aim of this study was to evaluate the digestibility of albumin and globulin protein fractions of dehulled black beans in conventional and germ-free mice and also in weaning rats (Wistar of 21 to 25 days of age. Protein Digestibility Corrected Amino Acid Score was also determined. True digestibility values in germ-free mice were 90.21 and 90

  8. Influence of lipid extraction from different protein sources on in vitro digestibility Influência da extração de lipídio de diferentes fontes protéicas na digestibilidade in vitro

    Rita de Cássia Oliveira Sant'Ana

    2011-08-01

    Full Text Available Proteins are the most abundant macromolecules in living cells and their primary role in the diet is to supply the body with essential amino acids in adequate quantities for the synthesis and maintenance of body tissues. The determination of protein digestibility of foods is an important factor to estimate their quality and the in vitro methodology is a fast and easy way to perform it. This study aimed to determine the influence of lipids on the in vitro digestibility of animal and vegetable proteins. The following protein sources: oat, beef, chicken, fish and pork meats, red beans, milk powder, textured soy protein (TSP, quinoa and five soybean varieties were evaluated. Animal proteins presented higher in vitro values than vegetable proteins, except for the textured soy protein, which presented higher digestibility based on the thermal treatment. In this study, there was no statistic difference between lipid content and protein digestibility. Therefore, there is no need that samples be defatted prior the analysis of the in vitro digestibility, using an enzymatic system containing the enzymes trypsin and pancreatin, which facilitates even more the use of these methods for foods with high lipid levels in food industries.As proteínas são as macromoléculas mais abundantes nas células vivas, tendo como principal função na dieta suprir o organismo de aminoácidos indispensáveis em quantidades adequadas para síntese e manutenção dos tecidos corporais. Desse modo, a determinação da digestibilidade proteica de um alimento é um fator importante para estimar a sua qualidade, sendo o método in vitro uma alternativa rápida e fácil. Neste trabalho, objetivou-se determinar a influência dos lipídios na digestibilidade in vitro de proteínas de origem animal e vegetal. Foram utilizadas as seguintes fontes de proteína: aveia, carnes: bovina, de frango, de peixe e suína, feijão vermelho, leite em pó, proteína texturizada de soja (PTS, quinoa

  9. Energy : protein management by some warmwater finfishes

    Luquet, Pierre; Moreau, Yann

    1990-01-01

    If warmwater finfish protein requirements as level in diet is low, absolute intake per day is similar to those of coldwater species. But relation to this requirement with specific growth rate differs for strictly warmwater fishes as tilapia. Analysis of partition between protein and non-protein energy provided and consequently improve their protein retention. Better carbohydrate digestibility and metabolism are propunded as part of the exploration. (Résumé d'auteur)

  10. An improved protein extraction method for detecting ruminant material in feed using lateral flow device dipsticks

    Karanam, M.

    2011-01-01

    Full Text Available The currently used immunological lateral flow based dipstick technology is not sensitive to detect the presence of ruminant animal material below 1% level of contamination in feed. The possible reason is that the processed animal proteins are subjected to chemicals and to high temperatures during the rendering process, thereby leading to either their denaturation or degradation. Also some feed samples producing viscous extracts or containing high contents of mineral or vitamins delay the migration flow in the test device and may thus give rise to either inconclusive or false positive results. Veterinary Laboratory Agency focused its efforts on developing a new protein extraction method through the EU Safeed-PAP project with the aim to increase the sensitivity of the dipstick method. The method developed is based on a bone sedimentation procedure coupled with an EDTA digestion step in order to liberate the protected proteins which are covalently bound to mineral structures within the bone mineral cage. All the results using this method showed that the feed contaminated with ruminant material is detected at 0.1 to 0.2% levels.

  11. An approach to improve kernel-based Protein-Protein Interaction extraction by learning from large-scale network data.

    Li, Lishuang; Guo, Rui; Jiang, Zhenchao; Huang, Degen

    2015-07-15

    Protein-Protein Interaction extraction (PPIe) from biomedical literatures is an important task in biomedical text mining and has achieved desirable results on the annotated datasets. However, the traditional machine learning methods on PPIe suffer badly from vocabulary gap and data sparseness, which weakens classification performance. In this work, an approach capturing external information from the web-based data is introduced to address these problems and boost the existing methods. The approach involves three kinds of word representation techniques: distributed representation, vector clustering and Brown clusters. Experimental results show that our method outperforms the state-of-the-art methods on five publicly available corpora. Our code and data are available at: http://chaoslog.com/improving-kernel-based-protein-protein-interaction-extraction-by-unsupervised-word-representation-codes-and-data.html. PMID:25864936

  12. Use of the mobile nylon bag technique for determination of apparent ileal digestibilities of crude protein and amino acids in feedstuffs for pigs

    Steiner, T; Bornholdt, U; Sauer, W C;

    2011-01-01

    studies included the feedstuffs (n = 10) from Exp. 1 and 2 as well as 14 further feedstuffs and mixed diets in which AID coefficients had been determined in previous trials. For each feedstuff 60 nylon bags were used. In vitro digestion of the bags was carried out in pepsin-HCl solution with 450 IU pepsin...

  13. Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast

    Huang, Mingtao; Bai, Yunpeng; Sjostrom, Staffan L.;

    2015-01-01

    There is an increasing demand for biotech-based production of recombinant proteins for use as pharmaceuticals in the food and feed industry and in industrial applications. Yeast Saccharomyces cerevisiae is among preferred cell factories for recombinant protein production, and there is increasing...... interest in improving its protein secretion capacity. Due to the complexity of the secretory machinery in eukaryotic cells, it is difficult to apply rational engineering for construction of improved strains. Here we used high-throughput microfluidics for the screening of yeast libraries, generated by UV...

  14. 枯草芽胞杆菌B7对肉鸡生长性能和蛋白消化率的影响%The Effects of Bacillus subtilis B7 on Growth Performance and Protein Digestibility in Broilers

    李春凤; 王静; 林显华; 王芳; 谷巍

    2012-01-01

    In order to study the effects of Bacillus subtilis B7 on growth performance, feed protein digestibility in broilers. One hundred and eighty seven-day-old broilers were randomly divided into three groups with 4 replicates in each group, which were the control group (group C K ),Bacillus s ubtilis 1 group (group Y 1 ),Bacillus s ubtilis 2 group (group Y2 ),the experimental period was 42 days. Study on the test set of material consumption, daily weight gain, feed conversion rate, gastric protein digestibility, ileal digestibility rate of protein. The results showed that, compared with CK group, Y2 group consumption was increased by 5.81%, weight gain was increased by 7.29%, feed conversion rate was reduced by 2.43%, which was a significantly difference(P〈0.05 ). Furthermore, at the age of 14 days, group Y2 feeds gastric protein digestibility and ileal digestibility rate of protein were respectively increased by 28.07% and 21.29%, and the difference is significant (P〈0.05). Broiler diets add the right amount of Bacillus subtilis can significantly improve the growth performance and feed utilization rate.%为了探讨肉鸡日粮中添加枯草芽胞杆菌B7对其生长性能、饲料蛋白消化率的影响,选取7日龄健康肉鸡180只,随机分成3个处理组。每个组设4个重复,分别为对照组(CK组)、枯草芽胞杆菌1组(Y1组)和枯草芽胞杆菌2组(Y2组),试验期为42d。研究各试验组日耗料、日增重、料肉比、胃蛋白消化率、回肠蛋白消化率。结果表明,与CK组相比,Y2组肉鸡日耗料提高了5.81%,日增重提高了7.29%,料肉比降低了2.43%,且三者差异均显著(P〈0.05);此外,在14日龄时,Y2组的饲料胃蛋白消化率和肠蛋白消化率分别提高了28.07%和21.29%,且两者差异显著(P〈0.05)。肉鸡日粮中添加适量的枯草芽胞杆菌能显著提高其生长性能和饲料利用率。

  15. Effect of Hydrothermal Cooking Treatment of Rice Bran on Functional Properties and In Vitro Digestibility of Protein%喷射蒸煮处理对米糠蛋白功能特性及体外消化性的影响

    夏宁; 胡磊; 王金梅; 周小玲; 杨晓泉

    2012-01-01

    Protein concentrates were prepared from un - stabilized and heat - stabilized rice bran by Hydrother-mal Teatment Cooking(HTC) ,and the size,subunit molecular weight distribution,functional property and in vitro digestibility of rice bran protein were also evaluated. HTC evidently improved the protein extraction yield (increased from 44. 9% and 14. 8% to 52. 2% and 44. 5% , respectively) ,but had no significant effect on the protein purity (P<0.05).The size of protein from un - stabilized and heat - stabilized rice bran decreased from 73. 6 nm and 149.1 nm to 46. 8 nm and 96. 6 nm,respectively. SDS -PAGE electrophoresis indicated that HTC resulted in the appearance of high molecular soluble protein aggregates and glycosylation products. The protein from heat - stabilized rice bran by HTC exhibited similar protein solubility, foam capacity and stability, and excellent emulsifying property to the protein from un - stabilized rice bran. Heat - stabilized rice bran protein showed high in vitro digestibility after HTC treatment, but un - stabilized rice bran protein showed lower digestibility than untreated protein.%研究了喷射蒸煮(HTC)处理对天然米糠蛋白(RBP)与热稳定米糠蛋白(HRBP)提取的影响,并对蛋白的粒度、亚基组成、接枝度、功能性及体外消化性能进行表征.研究表明:HTC处理能显著提高RBP与HRBP的得率(分别从44.9%与14.8%增加到52.2%与44.5%),但对蛋白的纯度没有显著影响.HTC处理后RBP与HRBP的粒度分别从73.6nm与149.1nm降低到46.8nm与96.6nm,同时生成接枝度28.0%与9.4%的糖基化产物.SDS-PAGE电泳图谱表明,处理后的米糠蛋白生成高分子质量的蛋白聚集体与糖基化产物.HTC处理更有利于HRBP功能性与消化性的提高,且HRBP具有RBP类似的溶解度曲线、起泡能力、泡沫稳定性与良好的乳化能力与消化能力,尽管该处理降低了天然米糠蛋白的消化性.

  16. Coassembly of Tobacco Mosaic Virus Coat Proteins into Nanotubes with Uniform Length and Improved Physical Stability.

    Zhou, Kun; Eiben, Sabine; Wang, Qiangbin

    2016-06-01

    Using tobacco mosaic virus coat proteins (TMVcp) from both sources of the plant and bacterial expression systems as building blocks, we demonstrate here a coassembly strategy of TMV nanotubes in the presence of RNA. Specifically, plant-expressed cp (cpp) efficiently dominates the genomic RNA encapsidation to determine the length of assembled TMV nanotubes, whereas the incorporated Escherichia coli-expressed cp (cpec) improves the physical stability of TMV nanotubes by introducing disulfide bonds between the interfaces of subunits. We expect this coassembly strategy can be expanded to other virus nanomaterials to obtain desired properties based on rationally designed protein-RNA and protein-protein interfacial interactions. PMID:27188634

  17. Approaches to Optimizing Animal Cell Culture Process: Substrate Metabolism Regulation and Protein Expression Improvement

    Zhang, Yuanxing

    Some high value proteins and vaccines for medical and veterinary applications by animal cell culture have an increasing market in China. In order to meet the demands of large-scale productions of proteins and vaccines, animal cell culture technology has been widely developed. In general, an animal cell culture process can be divided into two stages in a batch culture. In cell growth stage a high specific growth rate is expected to achieve a high cell density. In production stage a high specific production rate is stressed for the expression and secretion of qualified protein or replication of virus. It is always critical to maintain high cell viability in fed-batch and perfusion cultures. More concern has been focused on two points by the researchers in China. First, the cell metabolism of substrates is analyzed and the accumulation of toxic by-products is decreased through regulating cell metabolism in the culture process. Second, some important factors effecting protein expression are understood at the molecular level and the production ability of protein is improved. In pace with the rapid development of large-scale cell culture for the production of vaccines, antibodies and other recombinant proteins in China, the medium design and process optimization based on cell metabolism regulation and protein expression improvement will play an important role. The chapter outlines the main advances in metabolic regulation of cell and expression improvement of protein in animal cell culture in recent years.

  18. Improving analytical methods for protein-protein interaction through implementation of chemically inducible dimerization.

    Andersen, Tonni Grube; Nintemann, Sebastian J; Marek, Magdalena; Halkier, Barbara A; Schulz, Alexander; Burow, Meike

    2016-01-01

    When investigating interactions between two proteins with complementary reporter tags in yeast two-hybrid or split GFP assays, it remains troublesome to discriminate true- from false-negative results and challenging to compare the level of interaction across experiments. This leads to decreased sensitivity and renders analysis of weak or transient interactions difficult to perform. In this work, we describe the development of reporters that can be chemically induced to dimerize independently of the investigated interactions and thus alleviate these issues. We incorporated our reporters into the widely used split ubiquitin-, bimolecular fluorescence complementation (BiFC)- and Förster resonance energy transfer (FRET)- based methods and investigated different protein-protein interactions in yeast and plants. We demonstrate the functionality of this concept by the analysis of weakly interacting proteins from specialized metabolism in the model plant Arabidopsis thaliana. Our results illustrate that chemically induced dimerization can function as a built-in control for split-based systems that is easily implemented and allows for direct evaluation of functionality. PMID:27282591

  19. Molecular Analysis of Bacterial Community DNA in Sludge Undergoing Autothermal Thermophilic Aerobic Digestion (ATAD): Pitfalls and Improved Methodology to Enhance Diversity Recovery

    Anna V. Piterina; John Bartlett; Tony Pembroke, J.

    2010-01-01

    Molecular analysis of the bacterial community structure associated with sludge processed by autothermal thermophilic aerobic digestion (ATAD), was performed using a number of extraction and amplification procedures which differed in yield, integrity, ability to amplify extracted templates and specificity in recovering species present. Interference to PCR and qPCR amplification was observed due to chelation, nuclease activity and the presence of thermolabile components derived from the ATAD sl...

  20. Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

    Fernandez-Fuentes Narcis

    2011-08-01

    Full Text Available Abstract Background Protein binding site prediction by computational means can yield valuable information that complements and guides experimental approaches to determine the structure of protein complexes. Predictions become even more relevant and timely given the current resolution of protein interaction maps, where there is a very large and still expanding gap between the available information on: (i which proteins interact and (ii how proteins interact. Proteins interact through exposed residues that present differential physicochemical properties, and these can be exploited to identify protein interfaces. Results Here we present VORFFIP, a novel method for protein binding site prediction. The method makes use of broad set of heterogeneous data and defined of residue environment, by means of Voronoi Diagrams that are integrated by a two-steps Random Forest ensemble classifier. Four sets of residue features (structural, energy terms, sequence conservation, and crystallographic B-factors used in different combinations together with three definitions of residue environment (Voronoi Diagrams, sequence sliding window, and Euclidian distance have been analyzed in order to maximize the performance of the method. Conclusions The integration of different forms information such as structural features, energy term, evolutionary conservation and crystallographic B-factors, improves the performance of binding site prediction. Including the information of neighbouring residues also improves the prediction of protein interfaces. Among the different approaches that can be used to define the environment of exposed residues, Voronoi Diagrams provide the most accurate description. Finally, VORFFIP compares favourably to other methods reported in the recent literature.

  1. INCREASING ANAEROBIC DIGESTION PERFORMANCE OF WASTEWATER WITH CO-DIGESTION USING DECANTER CAKE

    Thaniya Kaosol

    2014-01-01

    Full Text Available Low biogas production in the frozen seafood wastewater anaerobic digestion is observed due to the low organic and Total Solids (TS contents in the wastewater. In this research the decanter cake will be used in the anaerobic co-digestion process to improve the biogas production rate. The effect of co-digestion and Hydraulic Retention Time (HRT will be investigated using the continuously stirred tank reactors under anaerobic conditions. Moreover, the study determines the biogas production potential of different HRTs and that of wastewater digestion alone. The anaerobic co-digestion is operated in continuous with continuously stirred reactors at HRT of 10, 20 and 30 days. The mechanical stirring units of all reactors are operated automatically. The stirring action occurred continuously during the experiments. The anaerobic co-digestion results show that the anaerobic co-digestion provides higher biogas production rate and higher methane yield than that of the wastewater digestion alone. The optimum HRT of the anaerobic co-digestion is 20 days. This reactor produces 2.88 L day-1, with 64.5% of methane and the maximum methane production rate of 1.87 L day-1 and the methane yield of 0.321 l CH4/g CODremoved. The anaerobic co-digestion of wastewater with decanter cake provides the higher methane yield potential production than that provided by the wastewater digestion alone at the ambient temperature. The best HRT is 20 days for anaerobic co-digestion between the wastewater and decanter cake. The experimental results reveal that HRT and co-digestion are the parameters that can affect the biogas production and methane yield.

  2. Digestible lysine requirements of broilers

    LEP Bernal

    2014-03-01

    Full Text Available Modern broilers have been submitted to continuous genetic improvement, and therefore, their nutritional requirements must be constantly updated to ensure their performance. Two experiments were carried out to evaluate different digestible lysine levels for starter (1021 days and grower (22-35 days phases. The experiments were carried out with male and female Cobb 500 broilers, distributed according to a randomized block experimental design in a 5x2 factorial arrangement (5 increasing digestible lysine levels x 2 sexes, totaling 10 treatments, with 8 replicates of 22 and 20 birds during the starter and grower phase, respectively. Digestible lysine levels of 1.06, 1.12, 1.18, 1.24, and 1.30 were used in the starter diets (10-21 days and 0.9, 0.98, 1.04, 1.10, and 1.16% in the grower diets (22-35 days. Based on the statistical analyses of the evaluated performance parameters, digestible lysine requirements for maximum performance were determined as 1.22% for males and 1.24% for females in the starter phase, and 1.16% for both sexes in the grower phase. Carcass and performance results indicate that digestible lysine requirements vary with sex and evaluated production parameter. Considering the most relevant broiler production parameters, in 22- to 35-d-old males, digestible lysine requirement for breast meat yield (1.16% was higher than those for feed conversion ratio (1.07% and weight gain (1.05%.

  3. Pressurized Pepsin Digestion in Proteomics: An Automatable Alternative to Trypsin for Integrated Top-down Bottom-up Proteomics

    Lopez-Ferrer, Daniel; Petritis, Konstantinos; Robinson, Errol W.; Hixson, Kim K.; Tian, Zhixin; Lee, Jung Hwa; Lee, Sang-Won; Tolic, Nikola; Weitz, Karl K.; Belov, Mikhail E.; Smith, Richard D.; Pasa-Tolic, Ljiljana

    2011-02-01

    Integrated top-down bottom-up proteomics combined with online digestion has great potential to improve the characterization of protein isoforms in biological systems and is amendable to highthroughput proteomics experiments. Bottom-up proteomics ultimately provides the peptide sequences derived from the tandem MS analyses of peptides after the proteome has been digested. Top-down proteomics conversely entails the MS analyses of intact proteins for more effective characterization of genetic variations and/or post-translational modifications (PTMs). Herein, we describe recent efforts towards efficient integration of bottom-up and top-down LCMS based proteomic strategies. Since most proteomic platforms (i.e. LC systems) operate in acidic environments, we exploited the compatibility of the pepsin (i.e. the enzyme’s natural acidic activity) for the integration of bottom-up and top-down proteomics. Pressure enhanced pepsin digestions were successfully performed and characterized with several standard proteins in either an offline mode using a Barocycler or an online mode using a modified high pressure LC system referred to as a fast online digestion system (FOLDS). FOLDS was tested using pepsin and a whole microbial proteome, and the results compared against traditional trypsin digestions on the same platform. Additionally, FOLDS was integrated with a RePlay configuration to demonstrate an ultra-rapid integrated bottom-up top-down proteomic strategy employing a standard mixture of proteins and a monkey pox virus proteome.

  4. Energy-protein management by some warmwater finfishes.

    Luguet, P; Moreau, Y

    1989-01-01

    If warmwater finfish protein requirements as level in diet is low, absolute intake per day is similar to those of coldwater species. But relation of this requirement with specific growth rate differs for strictly warmwater fishes as Tilapias. Analysis of partition between protein and non-protein energy retention shows that these species with Clarias make a better use of non-protein energy provided and consequently improve their protein retention. Better carbohydrate digestibility and metaboli...

  5. Improving analytical methods for protein-protein interaction through implementation of chemically inducible dimerization

    Tonni Grube Andersen; Nintemann, Sebastian J.; Magdalena Marek; Halkier, Barbara A.; Alexander Schulz; Meike Burow

    2016-01-01

    When investigating interactions between two proteins with complementary reporter tags in yeast two-hybrid or split GFP assays, it remains troublesome to discriminate true- from false-negative results and challenging to compare the level of interaction across experiments. This leads to decreased sensitivity and renders analysis of weak or transient interactions difficult to perform. In this work, we describe the development of reporters that can be chemically induced to dimerize independently ...

  6. Uso da cutina na estimativa das digestões total e parcial de alguns componentes de rações contendo diferentes fontes de nitrogênio, em bovinos Use of cutine to estimate ruminal, intestinal, and total tract digestibilities of nutrients in steers fed different protein supplements

    Leandro das Dores Ferreira da Silva

    2006-04-01

    Full Text Available Seis novilhos Holandês x Zebu canulados no rúmen e no abomaso foram alimentados com rações contendo dois níveis de casca de soja e três fontes protéicas para determinação das digestões total e parcial no rúmen e nos intestinos. A cutina foi utilizada como indicador interno para se quantificarem a MS da digesta abomasal e a matéria seca fecal. Após 15 dias de adaptação dos animais às rações e às condições experimentais, foram coletadas 12 amostras por animal e por período das digestas do abomaso e das fezes. Foram determinados os teores de cutina, MS, MO, PB, FDN, FDA e CNF nas amostras compostas por animal e por período experimental. Não foram observados efeitos das fontes protéicas sobre as quantidades de MS, MO, FDN, FDA e PB no rúmen, no abomaso e no intestino. A amiréia proporcionou maiores ingestões de CNF e menores coeficientes de digestibilidades da MS, FDN, FDA e de CNF que as demais fontes protéicas. À exceção da PB, o teor de casca de soja afetou positivamente a digestão desses componentes no trato digestivo total e no rúmen. Os resultados indicaram potencial da cutina como indicador da taxa de passagem dos componentes nutritivos ao longo do trato digestivo.Six Holstein x Zebu steers fitted with ruminal and abomasal cannulas and fed diets containing two levels of soybean hulls and three different protein supplements were used to determine ruminal, intestinal, and total tract digestibilities of nutrients. Cutine was used as the internal marker to quantify DM contents of both abomasal digesta and feces. After 15 days of diet adaptation, twelve samples of abomasal digesta and feces were taken from each animal in each period. Contents of cutine, DM, OM, CP, NDF, ADF, and NFC were all determined in samples that were pooled for animal and period. No significant differences in the amounts of ruminal, abomasal, and intestinal DM, OM, NDF, ADF, and CP were observed among protein supplemnts. Feeding starea to

  7. Optimizing weights of protein energy function to improve ab initio protein structure prediction

    Wang, Chao; Liu, Juntao; Zhang, Haicang; Ling, Bin; Li, Shuai Cheng; Zheng, Wei-Mou; Bu, Dongbo

    2013-01-01

    Predicting protein 3D structure from amino acid sequence remains as a challenge in the field of computational biology. If protein structure homologues are not found, one has to construct 3D structural conformations from the very beginning by the so-called ab initio approach, using some empirical energy functions. A successful algorithm in this category, Rosetta, creates an ensemble of decoy conformations by assembling selected best short fragments of known protein structures and then recognizes the native state as the highly populated one with a very low energy. Typically, an energy function is a combination of a variety of terms characterizing different structural features, say hydrophobic interactions, van der Waals force, hydrogen bonding, etc. It is critical for an energy function to be capable to distinguish native-like conformations from non-native ones and to drive most initial conformations assembled from fragments to a native-like one in a conformation search process. In this paper we propose a linea...

  8. Decreased Gap Width in a Cylindrical High-Field Asymmetric Waveform Ion Mobility Spectrometry Device Improves Protein Discovery.

    Swearingen, Kristian E; Winget, Jason M; Hoopmann, Michael R; Kusebauch, Ulrike; Moritz, Robert L

    2015-12-15

    High-field asymmetric waveform ion mobility spectrometry (FAIMS) is an atmospheric pressure ion mobility technique that separates gas phase ions according to their characteristic dependence of ion mobility on electric field strength. FAIMS can be implemented as a means of automated gas-phase fractionation in liquid chromatography-tandem mass spectrometry (LC-MS/MS) experiments. We modified a commercially available cylindrical FAIMS device by enlarging the inner electrode, thereby narrowing the gap and increasing the effective field strength. This modification provided a nearly 4-fold increase in FAIMS peak capacity over the optimally configured unmodified device. We employed the modified FAIMS device for on-line fractionation in a proteomic analysis of a complex sample and observed major increases in protein discovery. NanoLC-FAIMS-MS/MS of an unfractionated yeast tryptic digest using the modified FAIMS device identified 53% more proteins than were identified using an unmodified FAIMS device and 98% more proteins than were identified with unaided nanoLC-MS/MS. We describe here the development of a nanoLC-FAIMS-MS/MS protocol that provides automated gas-phase fractionation for proteomic analysis of complex protein digests. We compare this protocol against prefractionation of peptides with isoelectric focusing and demonstrate that FAIMS fractionation yields comparable protein recovery while significantly reducing the amount of sample required and eliminating the need for additional sample handling. PMID:26560994

  9. Comparação do valor nutritivo de farinhas de sangue e de farinhas de vísceras para suínos utilizando-se o método da proteína e gordura digestíveis e o método de substituição Comparison of digestible energy of blood meals and poultry by-product meals for pigs using the digestible protein and fat method and the replacement method

    João Dionísio Henn

    2006-08-01

    with 49 and 65 kg barrows (EXP 1 and 2, respectively to determine digestible energy (DE values of three sources of blood meals (EXP 1: conventional (CBM, flash dried (FDBM and spray dried red blood cells (SDRBC, and of three poultry by-product meals (EXP 2 (PBM-10.1, PBM-12.7, and PBM-16.7% of ash content by an alternative method to the replacement method (SbM. The method was based on the starch basal diet replacement with increasing levels of ingredient test (7 and 14%. Digestibility coefficients of protein (DCP and fat (DCF were obtained by the regression analysis between the percentage of added protein (or fat in the basal diet and the dietary digestible protein (or digestible fat percentage. Total feces collection was performed, during 5 days, for the digestibility assays, after 4 days of adaptation. Another treatment consisted of starch basal diet replacement with 25% of CBM or PBM-10.1 to determine DE by SbM. The DCP, DE and AME were of 30%, 1,432, and 1,246 kcal/kg for CBM; 86.7, 4.185, and 3,648 kcal/kg for FDBM and 84.6%, 4,041, and 3.512 kcal/kg for SDRBC, respectively. Regression lines difference was found between CBM and the other two sources. DE of CBM measured by SbM was of 988±268 kcal/kg. For PBM-10.1, PBM-12.7 and PBM-16.7, DCP, DCF, DE and AME were, respectively, 93.0, 87.6, 4,106, 3,719, 96.4, 85.6, 4,390, and 3,987 and 84.3%, 80.5%, 3,925, and 3,580 kcal/kg. Regression lines difference was found between PBP-16.7 and the other two sources for DCP. For DCF lines, no differences were found. DE value of PBM 10.1, measured by SbM, was of 4,057±164 kcal/kg. It is probable that SbM underestimate ingredient DE, specially for those with little palatability, as blood meals. The alternative method is a good option for DE calculations.

  10. Estimation of the standardized ileal digestible valine to lysine ratio required for 25- to 120-kilogram pigs fed low crude protein diets supplemented with crystalline amino acids.

    Liu, X T; Ma, W F; Zeng, X F; Xie, C Y; Thacker, P A; Htoo, J K; Qiao, S Y

    2015-10-01

    Four 28-d experiments were conducted to determine the standardized ileal digestible (SID) valine (Val) to lysine (Lys) ratio required for 26- to 46- (Exp. 1), 49- to 70- (Exp. 2), 71- to 92- (Exp. 3), and 94- to 119-kg (Exp. 4) pigs fed low CP diets supplemented with crystalline AA. The first 3 experiments utilized 150 pigs (Duroc × Landrace × Large White), while Exp. 4 utilized 90 finishing pigs. Pigs in all 4 experiments were randomly allocated to 1 of 5 diets with 6 pens per treatment (3 pens of barrows and 3 pens of gilts) and 5 pigs per pen for the first 3 experiments and 3 pigs per pen for Exp. 4. Diets for all experiments were formulated to contain SID Val to Lys ratios of 0.55, 0.60, 0.65, 0.70, or 0.75. In Exp. 1 (26 to 46 kg), ADG increased (linear, = 0.039; quadratic, = 0.042) with an increasing dietary Val:Lys ratio. The SID Val:Lys ratio to maximize ADG was 0.62 using a linear broken-line model and 0.71 using a quadratic model. In Exp. 2 (49 to 70 kg), ADG increased (linear, = 0.021; quadratic, = 0.042) as the SID Val:Lys ratio increased. G:F improved (linear, = 0.039) and serum urea nitrogen (SUN) decreased (linear, = 0.021; quadratic, = 0.024) with an increased SID Val:Lys ratio. The SID Val:Lys ratios to maximize ADG as well as to minimize SUN levels were 0.67 and 0.65, respectively, using a linear broken-line model and 0.72 and 0.71, respectively, using a quadratic model. In Exp. 3 (71 to 92 kg), ADG increased (linear, = 0.007; quadratic, = 0.022) and SUN decreased (linear, = 0.011; quadratic, = 0.034) as the dietary SID Val:Lys ratio increased. The SID Val:Lys ratios to maximize ADG as well as to minimize SUN levels were 0.67 and 0.67, respectively, using a linear broken-line model and 0.72 and 0.74, respectively, using a quadratic model. In Exp. 4 (94 to 119 kg), ADG increased (linear, = 0.041) and G:F was improved (linear, = 0.004; quadratic, = 0.005) as the dietary SID Val:Lys ratio increased. The SID Val:Lys ratio to maximize G:F was 0

  11. Postprandial kinetics of gene expression of proteins involved in the digestive process in rainbow trout (O. mykiss) and impact of diet composition.

    Borey, Marion; Panserat, Stephane; Surget, Anne; Cluzeaud, Marianne; Plagnes-Juan, Elisabeth; Herman, Alexandre; Lazzarotto, Viviana; Corraze, Geneviève; Médale, Françoise; Lauga, Beatrice; Burel, Christine

    2016-08-01

    The impact of increased incorporation of plant ingredients on diets for rainbow trout was evaluated in terms of gene expression of gastric (gastric lipase, pepsinogen) and intestinal (prolidase, maltase, phospholipase A2) digestive enzymes and nutrient transporters (peptide and glucose transporters), as well as of postprandial levels of plasma glucose, triglycerides and total free amino acids. For that purpose, trout alevins were fed from the start of exogenous feeding one of three different experimental diets: a diet rich in fish meal and fish oil (FM-FO), a plant-based diet (noFM-noFO) totally free from fish meal and fish oil, but containing plant ingredients and a Mixed diet (Mixed) intermediate between the FM-FO and noFM-noFO diets. After 16 months of rearing, all fish were left unfed for 72 h and then given a single meal to satiation. Blood, stomach and anterior intestine were sampled before the meal and at 2, 6 and 12 h after this meal. The postprandial kinetics of gene expression of gastric and intestinal digestive enzymes and nutrient transporters were then followed in trout fed the FM-FO diet. The postprandial profiles showed that the expression of almost all genes studied was stimulated by the presence of nutrients in the digestive tract of trout, but the timing (appearance of peaks) varied between genes. Based on these data, we have focused on the molecular response to dietary factors in the stomach and the intestine at 6 and 12 h after feeding, respectively. The reduction in FM and FO levels of dietary incorporation induced a significant decrease in the gene expression of gastric lipase, GLUT2 and PEPT1. The plasma glucose and triglycerides levels were also reduced in trout fed the noFM-noFO diet. Consequently, the present study suggests a decrease in digestive capacities in trout fed a diet rich in plant ingredients. PMID:26920536

  12. VOLUNTARY INTAKE, APPARENT DIGESTIBILITY AND DIGESTA KINETICS OF THREE PROTEIN-LEVEL FORAGES FED TO SHEEP CONSUMO VOLUNTÁRIO, DIGESTIBILIDADE APARENTE E CINÉTICA DIGESTIVA DE TRÊS FORRAGEIRAS EM OVINOS

    Adibe Luiz Abdalla

    2007-12-01

    Full Text Available

    The aim of this work was to evaluate the voluntary intake, apparent digestibility and digesta kinetics of three protein-level forages fed to Santa Inês sheep. Six sheep (LW = 40 ± 5.7 kg fitted with rumen cannulas were used. Lucerne (LUC, signalgrass (SIG and Tifton-85 grass (TIF hays were chosen due to their crude protein (CP content (respectively, 191, 29 and 75 g kg-1 DM. Treatments and animals were fitted in a double Latin square (3 treatments, 3 periods, 6 animals. To measure the voluntary intake, animals were kept in individual stall with free access to water and food, during the first phase of each period. The feed consisted exclusively of LUC, SIG or TIF and mineral supplementation. Apparent digestibility was determined by total faeces collection. Digesta kinetics was estimated using Co-EDTA and Cr mordant fibre as markers to liquid and solid phases, respectively. Means were compared by Tukey test. Dry matter voluntary intake of treatment LUC was higher (P < 0.05 than treatments SIG and TIF and it reflected the strong relationship between intake and protein content in the diet. Dry matter and organic matter apparent digestibility coefficients were superior (P < 0.05 for LUC. Crude protein apparent digestibility showed differences (P < 0.05 between the three treatments, being LUC (0.694 the highest observed followed by TIF (0.500. Crude protein apparent digestibility of SIG was practically null (0.001, indicating intense protein deficit. Dry matter voluntary intake and digestibility of tested feeds were influenced by chemical composition and digestion kinetics. Low protein feeds had a prejudicial effect in nutrient apparent digestibi-lity, decreasing until nullity for protein of treatment SIG.

    Key-words: Lucerne, marker, nutrition, ruminant, signalgrass, Tifton.

    O objetivo deste trabalho foi avaliar o consumo voluntário, a digestibilidade aparente e a cinética diges

  13. Digestibilidade aparente da matéria seca e da proteína bruta e a energia digestível de alguns alimentos alternativos pela tilápia do Nilo (Oreochromis niloticus - DOI: 10.4025/actascianimsci.v26i3.1798 Apparent digestibility of dry matter and crude protein; and digestible energy of some alternatives ingredients by Nile tilapia Oreochromis niloticus - DOI: 10.4025/actascianimsci.v26i3.1798

    Wilson Massumitu Furuya

    2004-04-01

    oats, urucum, manioc flakes, algoroba and alfafa hay and, five proteic ones: soybean, coconut meal, leucena, alcohol yeast and dehydrated milk. 12 purified diets were formulated including these ingredients and one as a reference. All diets were supplemented with 0.01% of chromic oxide as marker. 240 Nile tilapia juveniles, with 100.00 ± 10.0g average weight were stocked in cages (10 fish/cage for feeding and feces collection. During the feeding time (0800 AM - 0530PM these tanks were kept in 250L aquaria, one for each treatment, and fish were fed ad libitum. After that they were transferred to 300L aquaria adapted for feces collection, where they stayed until next morning. The apparent digestibility coefficient (ADC was determined based on chromic oxide concentration on diet and feces. It was concluded that, among the energetic ingredients, the manioc flakes and ensiled high-moisture corn showed the highest ADC for dry matter and crude protein and the best value for digestible energy; although the raw oats had showed good ADC for dry matter and crude protein. it did not prove to be a good energetic source for Nile tilapia; algaroba showed to be a good source of digestible energy; and, among proteic ingredients, the dehydrated milk, alcohol yeast and coconut meal showed the best ADC for dry matter and crude protein and also the highest values for digestible energy; leucena and soybean showed the worst ADC for dry matter and crude protein and the lowest values for digestible energy.

  14. 高温分解与乳酸菌分步发酵提高秸秆饲料消化率及适口性%Improving digestibility and palatability of straw feed by separating lignocellulose decomposition and lactic acid bacteria fermentation

    刘晶晶; 刘小平; 师建芳; 王小芬; 袁旭峰; 崔宗均

    2014-01-01

    In China, about 7.0×108 t of crop straws may be collected annually, and the amount suitable for converting to feed was approximately accounted for 85.67%. However, low digestibility and protein content prevent its use in feedlots, much of these materials were disposed by burning, which resulted in environmental pollution. A matrix formed by lignin and hemicellulose surrounds the orderly cellulose microfibrils and reduces their digestibility. The breakdown of the bonds between lignin and cellulose is the key to transform the lignocellulosic substrate into a high quality feed for ruminants. Studies have provided various results that removal of lignin enhanced the digestibility of straws. Although hemicellulose has higher potential digestibility than the other cell wall components, its degradation was not maximized because it concentrated in the primary wall, and no research results has been provided that the removal of hemicelluloses enhanced the digestibility. In order to improve the digestibility and nutrition value of air-dried corn stalk, and to develop a convenient and practical straw feed processing technology, experiments were carried out as follows:1) Corn stalk was fermented at 60℃in a feed fermentation machine for 5 days, after the moisture content of which was adjusted to 60%, and hemicellulose-degrading microflora WDC2 was inoculated in them; 2) Lactic acid bacteria community S FC-2 was cultivated in a fermentation tank, the working volume of which was 30 L; 3) Culture broth of SFC-2 was sprayed evenly on the corn stalk being partially degraded, at the rate of 1:1 (m/v) to produce fermented straw feed. In this study, the feasibility of bioconversion of straw as forage by dividing the fermentation into lignocellulose decomposition of corn stalk and malolactic fermentation of lactic acid bacteria, was discussed from the nutriology and the molecular ecology. The results indicated that after 5 days high-temperature fermentation, the degradation rates of

  15. True and apparent digestibility of protein and amino acids of feed in Nile tilapia Digestibilidade aparente e verdadeira de proteína e aminoácidos de alimentos em tilápia-do-nilo

    Felipe Barbosa Ribeiro

    2011-05-01

    Full Text Available It was determined in this work the coefficients of apparent and true digestibility of protein and amino acids of five feeds (corn, wheat bran, soybean meal, corn gluten meal, fish meal in Nile tilapia. It was used 252 reverted Thai strain Nile tilapia (Oreochromis niloticus in growth phase, with weight of 310 ± 9.68 g, distributed in experimental randomized blocks design, with five treatments, six replicates per treatment and seven fish per experimental unit. Each experimental diet contained a single source of protein, composed by the studied ingredients. An additional group of fish was fed protein-free diet for quantification of the endogenous fraction and determination of true digestibility coefficients. Digestibility was estimated by the indirect method by using chromium oxide at the concentration of 0.50% of the diet as a marker, performing fecal collection at every four hour interval by using decantation technique. Coefficients of apparent digestibility of the protein and amino acids are: corn, 83.57 and 82.45%; wheat bran 82.87 and 81.47%; soybean meal 91.12 and 89.41%; corn gluten meal 90.07 and 87.78%; fish meal 83.53 and 81.65% respectively. Coefficients of true digestibility of protein and the mean of the amino acids are: corn, 90.02 and 89.60%; wheat bran 89.62 and 89.14%; soybean meal 93.58 and 91.88%; corn gluten meal 92.50 and 90.34%; fish meal 86.01 and 84.27%, respectively.Foram determinados nesta pesquisa os coeficientes de digestibilidade aparente e verdadeira da proteína e dos aminoácidos de cinco alimentos (milho, farelo de trigo, farelo de soja, glúten de milho e farinha de peixe em tilápias-do-nilo. Utilizaram-se 252 tilápias revertidas (Oreochromis niloticus em fase de crescimento, da linhagem tailandesa, com peso de 310 ± 9,68 g, distribuídas em delineamento de blocos casualizados, composto de cinco tratamentos, seis repetições por tratamento e sete peixes por unidade experimental. Cada dieta experimental

  16. Protein-specific force field derived from the fragment molecular orbital method can improve protein-ligand binding interactions.

    Chang, Le; Ishikawa, Takeshi; Kuwata, Kazuo; Takada, Shoji

    2013-05-30

    Accurate computational estimate of the protein-ligand binding affinity is of central importance in rational drug design. To improve accuracy of the molecular mechanics (MM) force field (FF) for protein-ligand simulations, we use a protein-specific FF derived by the fragment molecular orbital (FMO) method and by the restrained electrostatic potential (RESP) method. Applying this FMO-RESP method to two proteins, dodecin, and lysozyme, we found that protein-specific partial charges tend to differ more significantly from the standard AMBER charges for isolated charged atoms. We did not see the dependence of partial charges on the secondary structure. Computing the binding affinities of dodecin with five ligands by MM PBSA protocol with the FMO-RESP charge set as well as with the standard AMBER charges, we found that the former gives better correlation with experimental affinities than the latter. While, for lysozyme with five ligands, both charge sets gave similar and relatively accurate estimates of binding affinities. PMID:23420697

  17. Concentrados protéicos para bovinos: 1. Digestibilidade in situ da matéria seca e da proteína bruta Protein concentrates for bovines: 1. In situ digestibility of dry matter and crude protein

    J.F.C. Moreira

    2003-06-01

    Full Text Available O objetivo deste trabalho foi determinar a degradação ruminal, pela técnica in situ, da matéria seca (MS e da proteína bruta (PB de 10 concentrados protéicos. As degradações potenciais da MS e da PB das farinhas de origem vegetal, soja, algodão, mamona e palmiste, mostraram-se elevadas (próximas a 100%, porém em função de taxas de degradação mais altas para o farelo de soja (10% e menores para o algodão (4%, mamona (MS:3%; PB:1,2% e palmiste (1,7%, as degradabilidades efetivas (DE foram bem superiores para o farelo de soja, independentemente da taxa de passagem, o que a torna a fonte protéica de maior disponibilidade ruminal. O glúten de milho mostrou ser uma fonte protéica de baixa degradabilidade ruminal (DE da PB: 16% para 0,05 de taxa de passagem. Dentre os alimentos de origem animal, a maior degradabilidade potencial da proteína bruta foi verificada para a farinha de carne e ossos ( 75,5%, seguida das farinhas de peixe I (58,5%, de penas e vísceras (52,3% e de sangue (36,7%. A maior degradabilidade efetiva para a taxa de passagem de 5% foi a da farinha de carne e ossos (51%, seguida da farinha de peixe I (41%, de penas e vísceras (40,0% e de sangue (33%. A farinha de peixe II apresentou valores muito baixos de degradabilidade, apenas 22% com 48h de incubação ruminal.This work aimed to determine the in situ rumen digestibility of dry matter (DM and crude protein (CP using 10 protein sources. Potential degradabilities of DM and CP of soybean meal, cottonseed meal, castorbean meal and palmist coconut meal were high (around 100%, however due to higher fractional degradation rates of soybean meal (10% and lower for cottonseed meal (4%, castorbean meal (DM:3%, CP:1.2% and palmist meal (1.7%, the effective degradability (ED of soybean was significantly higher despite the rates of passage, showing this protein source has the highest ruminal nitrogen availability (from 86% to 63%, as rate of passage increased from 2 to 8

  18. Improving the chances of successful protein structure determination with a random forest classifier

    Using an extended set of protein features calculated separately for protein surface and interior, a new version of XtalPred based on a random forest classifier achieves a significant improvement in predicting the success of structure determination from the primary amino-acid sequence. Obtaining diffraction quality crystals remains one of the major bottlenecks in structural biology. The ability to predict the chances of crystallization from the amino-acid sequence of the protein can, at least partly, address this problem by allowing a crystallographer to select homologs that are more likely to succeed and/or to modify the sequence of the target to avoid features that are detrimental to successful crystallization. In 2007, the now widely used XtalPred algorithm [Slabinski et al. (2007 ▶), Protein Sci.16, 2472–2482] was developed. XtalPred classifies proteins into five ‘crystallization classes’ based on a simple statistical analysis of the physicochemical features of a protein. Here, towards the same goal, advanced machine-learning methods are applied and, in addition, the predictive potential of additional protein features such as predicted surface ruggedness, hydrophobicity, side-chain entropy of surface residues and amino-acid composition of the predicted protein surface are tested. The new XtalPred-RF (random forest) achieves significant improvement of the prediction of crystallization success over the original XtalPred. To illustrate this, XtalPred-RF was tested by revisiting target selection from 271 Pfam families targeted by the Joint Center for Structural Genomics (JCSG) in PSI-2, and it was estimated that the number of targets entered into the protein-production and crystallization pipeline could have been reduced by 30% without lowering the number of families for which the first structures were solved. The prediction improvement depends on the subset of targets used as a testing set and reaches 100% (i.e. twofold) for the top class of predicted

  19. Influence of two plant extracts on broilers performance, digestibility, and digestive organ size.

    Hernández, F; Madrid, J; García, V; Orengo, J; Megías, M D

    2004-02-01

    A 42-d trial was conducted to study the influence of 2 plant extracts on performance, digestibility, and digestive organ weights in broilers. The feeding program consisted of a starter diet until 21 d and a finisher diet until 42 d. There were 4 treatment groups: control; 10 ppm avilamycin (AB); 200 ppm essential oil extract (EOE) from oregano, cinnamon, and pepper; and 5,000 ppm Labiatae extract (LE) from sage, thyme, and rosemary. No differences in feed intake or feed conversion were observed. From 14 to 21 d of age, broilers fed the LE diet grew faster than the broilers fed the control or EOE feeds (68.8 vs. 63.9 and 61.6 g/d, respectively). Antibiotic and plant extract supplementation improved apparent whole-tract and ileal digestibility of the nutrients. For starter feed, LE supplementation improved apparent fecal digestibility of DM (P 0.1). At the ileal level, the AB, EOE, and LE supplementation of the starter feed increased DM and starch (P 0.1). All additives improved apparent fecal digestibility of DM and CP of the finisher diet. No differences were observed for proventriculus, gizzard, liver, pancreas, or large or small intestine weight. In the present study, both plant extracts improved the digestibility of the feeds for broilers. The effect of different additives on digestibility improved the performance slightly, but this effect was not statistically significant. PMID:14979566

  20. Prospects for using aneuploids and their derivatives for wheat protein improvement

    The prospects for using the aneuploid technique in studies related to protein improvement in wheat are considered. Chromosomal location of gene(s) governing specific proteins or enzymes, separated by electrophoresis or electrofocusing, can be ascertained using ditelosomics where one arm of a homologous chromosome pair is absent. Reliable quantitative information on chromosomal effects on protein or specific amino-acid content can be obtained only from inter-varietal substitution lines in which a pair of the donor variety chromosomes substitutes for a pair of the recipient variety. Addition or substitution of certain rye chromosomes in wheat is reported to increase lysine of protein conten. Efficiency of mutation experiments, aimed to recover mutants with altered protein characteristics, can be greatly enhanced by treating the monosomic for the dhromosome that is known to carry the gene(s) having such influence. (author)