Sample records for arvicolinae
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Lv, Xue; Xia, Lin; Ge, Deyan; Wu, Yongjie; Yang, Qisen
2016-05-01
Climatic niche conservatism shapes patterns of diversity in many taxonomic groups, while ecological opportunity (EO) can trigger rapid speciation that is less constrained by the amount of time a lineage has occupied a given habitat. These two processes are well studied, but limited research has considered their joint and relative roles in shaping diversity patterns. We characterized climatic and biogeographic variables for 102 species of arvicoline rodents (Arvicolinae, Cricetidae), testing the effects of climatic niche conservatism and EO on arvicoline diversification as lineages transitioned between biogeographic regions. We found that the amount of time a lineage has occupied a precipitation niche is positively correlated with diversity along a precipitation gradient, suggesting climatic niche conservatism. In contrast, shift in diversification rate explained diversity patterns along a temperature gradient. Our results suggest that an indirect relationship exists between temperature and diversification that is associated with EO as arvicoline rodents colonized warm Palearctic environments. Climatic niche conservatism alone did not fully explain diversity patterns under density-dependence, highlighting the additional importance of EO-related processes in promoting the explosive radiation in arvicoline rodents and shaping diversity pattern among biogeographic regions and along climatic gradients. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.
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Multilocus phylogeny of arvicoline voles (Arvicolini, Rodentia) shows small tree terrace size
Czech Academy of Sciences Publication Activity Database
Martínková, Natália; Moravec, J.
2012-01-01
Roč. 61, 3-4 (2012), s. 254-267 ISSN 0139-7893 R&D Projects: GA AV ČR IAA600930609 Institutional support: RVO:68081766 Keywords : divergence * evolutionary history * supertree * supermatrix * phylogenetic tree terrace * Microtus * Arvicolinae Subject RIV: EG - Zoology Impact factor: 0.494, year: 2012
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The complete mitochondrial genome of the bank vole Clethrionomys glareolus ( Rodentia: Arvicolinae)
Czech Academy of Sciences Publication Activity Database
Bendová, Karolína; Marková, Silvia; Searle, J. B.; Kotlík, Petr
2016-01-01
Roč. 27, č. 1 (2016), s. 111-112 ISSN 1940-1736 R&D Projects: GA ČR GAP506/11/1872; GA AV ČR IAA600450901 Institutional support: RVO:67985904 Keywords : mtDNA capture * Myodes glareolus * phylogeography Subject RIV: EG - Zoology Impact factor: 3.350, year: 2016
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Czech Academy of Sciences Publication Activity Database
Modrý, David; Hofmannová, L.; Antalová, Z.; Sak, Bohumil; Kváč, Martin
2012-01-01
Roč. 111, č. 1 (2012), s. 471-473 ISSN 0932-0113 R&D Projects: GA MŠk(CZ) LH11061 Institutional support: RVO:60077344 Keywords : C-MURIS * CATTLE * PARVUM Subject RIV: GJ - Animal Vermins ; Diseases, Veterinary Medicine Impact factor: 2.852, year: 2012
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Directory of Open Access Journals (Sweden)
Henry Puerta
2006-08-01
Full Text Available Los hantavirus son un grupo de patógenos emergentes (familia Bunyaviridae; género Hantavirus identificados como agentes etiológicos de la Fiebre Hemorrágica con Síndrome Renal (FHSR en Europa y Asia y el Síndrome Cardiopulmonar por Hantavirus (SCPH en las Américas. La FHSR está relacionada con roedores de las subfamilias Murinae y Arvicolinae y el SCPH con roedores de las subfamilias Sigmodontinae y Arvicolinae. Desde la identificación del SCPH en los EE.UU. en 1993, muchos casos de SCPH y un número cada vez mayor de hantavirus y sus roedores reservorios han sido identificados en Centro y Sud América. Estudios epidemiológicos han demostrado diferencias notables en las seroprevalencias de anticuerpos en humanos y roedores reservorios que oscilan entre el 1% y más del 40%. Hasta ahora han sido notificados en toda América más de 1500 casos de SCPH y aproximadamente más de 15 variantes de hantavirus genética y serológicamente distintos asociados a roedores sigmodontinos. Las formas clínicas leves-autolimitadas, moderadas y graves de la enfermedad, los antecedentes de transmisión persona a persona y una incidencia mayor de manifestaciones clínicas extrapulmonares que se diferencian de la enfermedad clásica descrita por primera vez en EE.UU., son aspectos importantes sobre la epidemiología de los hantavirus y el SCPH en Latinoamérica; sin embargo, la historia completa de los hantavirus está aún por escribirse, debido a la naturaleza dinámica de estos virus y sus patologías, y a la complejidad de los factores que intervienen en su aparición, establecimiento y diseminación en poblaciones humanas y animales. Latinoamérica continúa representando la porción del continente con una oportunidad única y desafiante para el estudio de la relación de los hantavirus con sus huéspedes reservorios naturales y las interacciones virus-roedor-humano. Probablemente más hantavirus podrían ser descritos en el futuro, y ser
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Acosta, M J; Marchal, J A; Fernández-Espartero, C H; Bullejos, M; Sánchez, A
2008-01-01
The chromosomal distribution of mobile genetic elements is scarcely known in Arvicolinae species, but could be of relevance to understand the origin and complex evolution of the sex chromosome heterochromatin. In this work we cloned two retrotransposon sequences, L1 and SINE-B1, from the genome of Chionomys nivalis and investigated their chromosomal distribution on several arvicoline species. Our results demonstrate first that both retroelements are the most abundant repeated DNA sequences in the genome of these species. L1 elements, in most species, are highly accumulated in the sex chromosomes compared to the autosomes. This favoured L1 insertion could have played an important role in the origin of the enlarged heterochromatic blocks existing in the sex chromosomes of some Microtus species. Also, we propose that L1 accumulation on the X heterochromatin could have been the consequence of different, independent and rapid amplification processes acting in each species. SINE elements, however, were completely lacking from the constitutive heterochromatin, either in autosomes or in the heterochromatic blocks of sex chromosomes. These data could indicate that some SINE elements are incompatible with the formation of heterochromatic complexes and hence are necessarily missing from the constitutive heterochromatin.
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Jääskeläinen, Kirsi M; Kaukinen, Pasi; Minskaya, Ekaterina S; Plyusnina, Angelina; Vapalahti, Olli; Elliott, Richard M; Weber, Friedemann; Vaheri, Antti; Plyusnin, Alexander
2007-10-01
The S RNA genome segment of hantaviruses carried by Arvicolinae and Sigmodontinae rodents encodes the nucleocapsid (N) protein and has an overlapping (+1) open reading frame (ORF) for a putative nonstructural protein (NSs). The aim of this study was to determine whether the ORF is functional. A protein corresponding to the predicted size of Tula virus (TULV) NSs was detected using coupled in vitro transcription and translation from a cloned S segment cDNA, and a protein corresponding to the predicted size of Puumala virus (PUUV) NSs was detected in infected cells by Western blotting with an anti-peptide serum. The activities of the interferon beta (IFN-beta) promoter, and nuclear factor kappa B (NF-kappaB)- and interferon regulatory factor-3 (IRF-3) responsive promoters, were inhibited in COS-7 cells transiently expressing TULV or PUUV NSs. Also IFN-beta mRNA levels in IFN-competent MRC5 cells either infected with TULV or transiently expressing NSs were decreased. These data demonstrate that Tula and Puumala hantaviruses have a functional NSs ORF. The findings may explain why the NSs ORF has been preserved in the genome of most hantaviruses during their long evolution and why hantavirus-infected cells secrete relatively low levels of IFNs. (c) 2007 Wiley-Liss, Inc.
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Directory of Open Access Journals (Sweden)
SÁNDOR D. Attila
2008-10-01
Full Text Available The Barn Owl (Tyto alba is a common nocturnal predator of agro-ecosystems and it is widely distributed, especially in European countryside. The species uses human artifacts, ruins, barns, attics, towers for breeding and roosting, these sites can provide researchers with hundreds of pellets, thus its diet is well known. A first assessment of the diet and food selection was made for the southern part of the Danube Delta Biosphere Reserve in the wintering period, in a unique wetland-grassland complex, with large areas of steppes. Mammals dominated the diet spectrum, with the shrews (Soricidae being the most frequent (48.3%, followed by the mice (Muridae, and the voles (Arvicolinae. The mammalian component of the diet is important also in terms of biomass (97.8 %. The most valuable species is the Sibling Vole (Microtus epiroticus equalling 25.5 % of all biomass consumed, followed by the Common White-toothed Shrew (Crocidura suaveolens and the Mound-building Mouse (Mus spicilegus. Birds and amphibians made up a small portion of the diet, both in terms of occurrence and of biomass. Three species of birds were captured, the House Sparrow (Passer domesticus being the most important. The results suggest that the Barn Owl is a specialized feeder relying on small mammals and completing its diet with other prey only occasionally.
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Diet of the Tawny Owl Strix aluco in the area of Slovenske gorice (NE Slovenia
Directory of Open Access Journals (Sweden)
Janžekovič Franc
2017-11-01
Full Text Available The diet of Tawny Owl Strix aluco was studied in the area of Slovenske gorice - NE Slovenia. The analysis was carried out by examining pellets collected at ten locations in the period from 1984 to 2015. From the pellets, 2,121 prey units were isolated. The predominant prey were mammals (Mammalia, 84.8%, followed by birds (Aves, 8.3%, insects (Insecta, 4.7%, frogs (Anura, 1.6% and earthworms (Oligochaeta, 0.5%. Four orders of mammals were found: rodents (Rodentia, insectivores (Insectivora, bats (Chiroptera and carnivores (Carnivora. The most frequent prey in the owls’ diet were voles (Arvicolinae, 46.6% and mice (Murinae, 28.8%, while the number of shrews (Soricidae was low (4.5%. The obtained results are in concordance with the conclusions of other studies. In the area of Slovenske gorice, the Tawny Owl is an opportunistic predator of small mammals with an emphasis on voles and mice. Prey frequencies differ significantly among some localities. Variability in proportions of prey species among localities can also be the result of sampling carried out in different seasons and variability in the population dynamics of small mammals among years. Challenges for future research are to describe seasonal variability of the diet and to evaluate interspecific competition within the guild of night predators of small mammals: Tawny Owl, Long-eared Owl Asio otus, and Barn Owl Tyto alba, which are sympatric in this area.
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Directory of Open Access Journals (Sweden)
Hjertqvist Marika
2011-02-01
Full Text Available Abstract Background The fox tapeworm Echinococcus multilocularis has foxes and other canids as definitive host and rodents as intermediate hosts. However, most mammals can be accidental intermediate hosts and the larval stage may cause serious disease in humans. The parasite has never been detected in Sweden, Finland and mainland Norway. All three countries require currently an anthelminthic treatment for dogs and cats prior to entry in order to prevent introduction of the parasite. Documentation of freedom from E. multilocularis is necessary for justification of the present import requirements. Methods The probability that Sweden, Finland and mainland Norway were free from E. multilocularis and the sensitivity of the surveillance systems were estimated using scenario trees. Surveillance data from five animal species were included in the study: red fox (Vulpes vulpes, raccoon dog (Nyctereutes procyonoides, domestic pig, wild boar (Sus scrofa and voles and lemmings (Arvicolinae. Results The cumulative probability of freedom from EM in December 2009 was high in all three countries, 0.98 (95% CI 0.96-0.99 in Finland and 0.99 (0.97-0.995 in Sweden and 0.98 (0.95-0.99 in Norway. Conclusions Results from the model confirm that there is a high probability that in 2009 the countries were free from E. multilocularis. The sensitivity analyses showed that the choice of the design prevalences in different infected populations was influential. Therefore more knowledge on expected prevalences for E. multilocularis in infected populations of different species is desirable to reduce residual uncertainty of the results.
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Czech Academy of Sciences Publication Activity Database
Bryja, Josef; Galan, M.; Charbonnel, N.; Cosson, J.-F.
2006-01-01
Roč. 58, 2-3 (2006), s. 191-202 ISSN 0093-7711 EU Projects: European Commission(XE) 10284 - EDEN Institutional research plan: CEZ:AV0Z60930519 Keywords : Muridae * allelic diversity Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.852, year: 2006
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Sawyer, Yadéeh E; Cook, Joseph A
2016-09-01
Quaternary climate fluctuations restructured biodiversity across North American high latitudes through repeated episodes of range contraction, population isolation and divergence, and subsequent expansion. Identifying how species responded to changing environmental conditions not only allows us to explore the mode and tempo of evolution in northern taxa, but also provides a basis for forecasting future biotic response across the highly variable topography of western North America. Using a multilocus approach under a Bayesian coalescent framework, we investigated the phylogeography of a wide-ranging mammal, the long-tailed vole, Microtus longicaudus . We focused on populations along the North Pacific Coast to refine our understanding of diversification by exploring the potentially compounding roles of multiple glacial refugia and more recent fragmentation of an extensive coastal archipelago. Through a combination of genetic data and species distribution models (SDMs), we found that historical climate variability influenced contemporary genetic structure, with multiple isolated locations of persistence (refugia) producing multiple divergent lineages (Beringian or northern, southeast Alaska or coastal, and southern or continental) during glacial advances. These vole lineages all occur along the North Pacific Coast where the confluence of numerous independent lineages in other species has produced overlapping zones of secondary contact, collectively a suture zone. Finally, we detected high levels of neoendemism due to complex island geography that developed in the last 10,000 years with the rising sea levels of the Holocene.
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Evolutionary history of the most speciose mammals: molecular phylogeny of muroid rodents.
Michaux, J; Reyes, A; Catzeflis, F
2001-11-01
Phylogenetic relationships between 32 species of rodents representing 14 subfamilies of Muridae and four subfamilies of Dipodidae were studied using sequences of the nuclear protein-coding genes Lecithin Cholesterol Acyl Transferase (LCAT) and von Willebrand Factor (vWF). An examination of some evolutionary properties of each data matrix indicates that the two genes are rather complementary, with lower rates of nonsynonymous substitutions for LCAT. Both markers exhibit a wide range of GC3 percentages (55%-89%), with several taxa above 70% GC3 for vWF, which indicates that those exonic regions might belong to the richest class of isochores. The primary sequence data apparently harbor few saturations, except for transitions on third codon positions for vWF, as indicated by comparisons of observed and expected pairwise values of substitutions. Phylogenetic trees based on 1,962 nucleotidic sites from the two genes indicate that the 14 Muridae subfamilies are organized into five major lineages. An early isolation leads to the clade uniting the fossorial Spalacinae and semifossorial Rhizomyinae with a strong robustness. The second lineage includes a series of African taxa representing nesomyines, dendromurines, cricetomyines, and the sole living member of mystromyines. The third one comprises only the mouselike hamster CALOMYSCUS: The fourth clade represents the cricetines, myospalacines, sigmodontines, and arvicolines, whereas the fifth one comprises four "traditional" subfamilies (Gerbillinae, Murinae, Otomyinae, and Acomyinae). Within these groups, we confirm the monophyly of almost all studied subfamilies, namely, Spalacinae, Rhizomyinae, Nesomyinae, Cricetomyinae, Arvicolinae, Sigmodontinae, Cricetinae, Gerbillinae, Acomyinae, and Murinae. Finally, we present evidence that the sister group of Acomyinae is Gerbillinae, and we confirm a nested position of Myospalacinae within Cricetinae and Otomyinae within Murinae. From a biogeographical point of view, the five main