Syagrus schizophylla: Unconventional Food Plant of the Caatinga Biome with a high caloric value | Syagrus schizophylla: Planta alimentícia não convencional do bioma de caatinga com alto valor calórico

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Maria do Rosário Fátima Padilha

2017-06-01

Full Text Available In the present day world concern relates to the effects of climate on plantations. In various parts of the world, forests, fields, plantations continue to disappear or are degraded. Brazil is a country that concentrates a great diversity of plants, this also refers to the Caatinga biome that participates in the vegetal cover of the state of Pernambuco, where this vegetation still displays the presence of unconventional food plants (UFP. Seeking to know in more detail the nutritional value of fruits of the palm Syagrus schizophylla known as Catolé coconut, this study sought to assess the centesimal composition of its almonds. Physico-chemical tests were performed in triplicate and according to methodologies of Instituto Adolfo Lutz-IAL. Before the results, it is concluded that the Catolé coconut almond is very nutritious and presents high caloric value.

Phylogenetic analysis of Attalea (Arecaceae): insights on the historical biogeography of a recently diversified Neotropical plant group

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Technical Abstract Here we present a dated phylogenetic tree of the neotropical palm genus Attalea (Arecaceae). We used six orthologs from the nuclear WRKY gene family across 98 accessions to address relationships among species and biogeographic hypotheses. Here we found that the formerly recognized...

Catolé palm (Syagrus oleracea Mart fruits: fatty and amino acids composition

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Moreira, Rosalynd V. R.

2003-06-01

Full Text Available Catolé Palm (Syagrus oleracea Mart Fruits were analysed for their chemical composition. The pulp and kernel portions contained 0.7 and 40.0% lipids. Freshly extracted kernel oil showed a small concentration (0.4 meq/kg of peroxides but did not contain free fatty acids. The iodine and saponification values were 27.4 and 226, respectively. A large qualitative as well as quantitative difference in the fatty acid composition between the catolé pulp and kernel oil was observed. Fifteen and 19 fatty acids were identified in the pulp and kernel oil, respectively. These oils contained 48.9 and 73.2 % saturated fatty acids. The principal saturated fatty acids of the pulp oil was palmitic (C16 acid, while that of kernel oil was lauric (C12 acid. Oleic acid was the main monounsaturated fatty acid in both oils. In pulp oil, linoleic (C18:2 and linolenic (C18:3 were present at 23.5 and 11,3% concentrations, while kernel oil contained only linoleic acid (3.59%. In relation to amino acid composition of proteins, pulp proteins presented better amino acid profile than kernel proteins. In pulp proteins, the essential amino acids were present at concentrations higher than recommended by FAO except for methionine and lysine, while kernel proteins were deficient in all essential amino acids except phenylalanine, isoleucine and threonine.Los frutos de la Palmera catolé (Syagrus oleracea Mart fueron analizados para determinar su composición química. Las fracciones de la pulpa y almendra contenían 0,7 y 40.0 % de lípidos. El aceite de almendra fresca mostró una pequeña concentración de peróxidos pero no presentó ácidos grasos libres. El índice de iodo y de saponificación fueron 27,4 y 226, respectivamente. Fue observada una gran diferencia cualitativa como también cuantitativa en la composición de ácidos grasos entre el aceite de la pulpa y de la almendra. 15 y 19 ácidos grasos fueron identificados en el aceite de la pulpa y de la almendra

Phylogeny and historical biogeography of the cocosoid palms (Arecaceae, Arecoideae, Cocoseae) inferred from sequences of six WRKY gene family loci

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Arecaceae tribe Cocoseae is the most economically important tribe of palms, including both coconut and African oil palm. It is mostly represented in the Neotropics, with one and two genera endemic to South Africa and Madagascar, respectively. Using primers for six single copy WRKY gene family loci...

GENE FLOW AS A GENETIC HOMOGENIZATION EVENT BETWEEN POPULATIONS OF ACROCOMIA ACULEATA (JACQ.) LODD. EX MART AND A. TOTAI MART (ARECACEAE)

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Technical Abstract The taxonomy of species of the genus Acrocomia (Arecaceae) is unclear. Some authors recognize two species: the caulescent Acrocomia aculeata and the acaulescent A. hassleri (Barb. Rodr.) W. J. Hahn; while others in recognition of the high phenotypic diversity assume the presence o...

Morfometria testicular de cabritos alimentados com óleo de licuri (Syagrus coronata

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L.P. Barbosa

2012-08-01

Full Text Available Determinou-se o desenvolvimento testicular de caprinos pré-púberes alimentados com óleo de licuri (Syagrus coronata na dieta. Foram utilizados 19 cabritos ¾ Boer, recém-desmamados, com média de idade de três meses. Os animais, submetidos a um período de 75 dias de confinamento, receberam alimentação composta por: farelo de milho, farelo de soja, feno picado de tifton 85 e de óleo de licuri com base na matéria seca. Os animais foram distribuídos em quatro grupos: sem lipídio adicional (n= 5; com 1,5% de óleo de licuri (n= 5; com 3,0% de óleo de licuri (n= 5; e com 4,5% de óleo de licuri (n= 4. As avaliações de peso corporal e de biometria testicular foram realizadas quinzenalmente. Após o período de confinamento, os animais foram abatidos para determinação do peso dos testículos, peso dos epidídimos e índice gonadossomático. A adição de óleo de licuri em até 4,5% na dieta de caprinos pré-púberes não alterou o desenvolvimento testicular com base nas características da biometria e morfometria testicular, indicando que a inclusão de até 4,5% de óleo de licuri na dieta pode ser utilizada.

Estado actual de la Colección de Palmas (Arecaceae) del Herbario Nacional de Venezuela (VEN)

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Espinoza Flores, Yaroslavi

2014-01-01

The National Herbarium of Venezuela (VEN) has the largest collection of botanical specimens in the country,thus being the main source of reference for the flora of Venezuela. It also hosts a large number of specimensfrom other countries in the Neotropical region. The VEN contains approximately 400 000 specimens currentlyregistered in the herbarium’s database, of which 2192 form the palm (Arecaceae) collection that encompasses35 genera (including 5 foreign genera) and 127 specific and infraspe...

When species trees collide: phylogeny and historical biogeography of the cocosoid palms (Arecaceae, Arecoideae, Cocoseae) inferred from sequences of six WRKY gene family loci

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Arecaceae tribe Cocoseae is the most economically important tribe of palms, wherein both coconut and African oil palm are classified. It is mostly represented in the Neotropics, with one and two genera endemic to South Africa and Madagascar, respectively. Three subtribes are recognized: Attaleinae...

Commonness of Amazonian palm (Arecaceae) species: Cross-scale links and potential determinants

DEFF Research Database (Denmark)

Kristiansen, Thea; Svenning, J.-C.; Grández, César

2009-01-01

was positively related to topographic niche breadth. Stem height correlated with continental range size and was the only species life-history trait related to any commonness measure. Distance from the study area to a species' range centre did not influence any of the commonness measures. The factors determining......The mechanisms that cause variation in commonness (abundances and range sizes) of species remain debated in ecology, and a repeatedly observed pattern is the positive relation between local abundances and larger scale range sizes. We used the Amazonian palm species (Arecaceae) to investigate...... the dependence between and potential determinants of commonness across three (local, landscape, continental) spatial scales. Commonness at the smaller scales (local abundance, landscape frequency) was estimated using data from 57 transects (5 × 500 m) in primary, non-inundated (terra firme) rainforest...

Epiderme dos segmentos foliares de Mauritia flexuosa L. f. (Arecaceae em três fases de desenvolvimento Epidermis of leaf segments from Mauritia flexuosaL. f. (Arecaceae on three phases of development

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Mahedy Araújo Bastos Passos

2006-12-01

Full Text Available São apresentados os dados anatômicos da epiderme dos segmentos foliares de Mauritia flexuosa L. f. (Arecaceae em três fases do desenvolvimento. Os segmentos foliares foram analisados em toda a extensão do limbo. As células intercostais da epiderme das faces adaxial e abaxial evidenciam-se com paredes sinuosas, retangulares e orientadas longitudinalmente em relação ao eixo do segmento foliar com acentuada presença de corpos de sílica esférico-espinulosos. As células epidérmicas da região costal de ambas as faces apresentam paredes retas e variam entre curtas, longas e arredondadas. Os tricomas são simples, unicelulares, longos, com base mais alargada. Os segmentos foliares de M. flexuosa são anfiestomáticos com estômatos tetracíticos. Em secção transversal a epiderme foliar é uniestratificada com câmara subestomática ampla. Os resultados obtidos não demonstraram variações expressivas entre as três fases de desenvolvimento e os caracteres encontrados parecem ser comuns a outras palmeiras.Anatomic data on the epidermis leaf segments from Mauritia flexuosa L. f. (Arecaceae are presented on three phases of development. Leaf segments were analyzed on the all extension of leaf. Both adaxial and abaxial epidermal cells stand out with sinuous walls, rectangular and longitudinally oriented to the foliar axis with the marked presence of spherical- spiny silica bodies. The back epidermal cells of both surfaces present straight walls and vary among short, long and round. Trichomes are unicellular, simple, long, with a wider base. Leaf segments from M. flexuosa are anphistomatic with tetracitic type stomats. In a cross-section the leaf skin is unistratified with a broad substimatic chamber. The findings obtained showed no significant variations among the three phases of development and the characters that were found appear to be common on other palm trees.

To what extent does Tobler's law of geography apply to macroecology? A case study using American palms (Arecaceae)

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Bjorholm, Stine Wendelboe; Svenning, J.-C.; Skov, Flemming

2008-01-01

palms (Arecaceae) as an example, we assess the extent to which Tobler's first law applies to species richness and species composition, two fundamental aspects of ecological community structure. To shed light on the mechanisms driving distance decays in community structure, we also quantify the relative......Tobler's first law of geography, 'Everything is related to everything else, but near things are more related than distant things' also applies to biological systems as illustrated by a general and strong occurrence of geographic distance decay in ecological community similarity. Using American...

An overview of the taxonomy of Attalea (Arecaceae

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Jean-Christophe Pintaud

2014-03-01

Full Text Available The genus Attalea (Arecaceae is distributed in continental habitats of the Neotropical region and in some Caribbean islands. Life forms of Attalea species vary from small acaulescent palms to tall and massive palms, always solitary. The ecological range of the genus encompasses most of the Neotropical ecosystems, from coastal sand dunes to sub-Andean forests up to 1600 m in elevation, lowland wet to dry forests, savannas, swamps, etc. The taxonomy of the genus has been poorly understood due to conflicting genus and species concepts that exist since the last decades. Taxonomical problems have been caused by the lack of adequate material, especially species of large size, loss of many types and difficulties in interpreting hybrids. In this article, I review the most recent taxonomic literature on Attalea. The number of species in Attalea varies from 29 to 67 depending on different authors, with a maximum estimate of 73 species when combining the revised publications. There is a consensus for the validity of 20 species among modern palm taxonomists. The most conflicting species or group of species are discussed in detail as well as the taxonomic significance of some characters such as the pattern of insertion of staminate flowers on rachillae, insertion of pinnae on rachis, and arrangement of fibrous strands in the endocarp.

Conhecimento e uso do ouricuri (Syagrus coronata e do babaçu (Orbignya phalerata em Buíque, PE, Brasil Knowledge and use of ouricuri (Syagrus coronata and babaçu (Orbignya phalerata in Buíque, Pernambuco State, Brazil

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Márcio Ulisses de Lima Rufino

2008-12-01

Full Text Available O Nordeste do Brasil abriga 80 espécies de palmeiras nativas, com baixo endemismo (27,5%, algumas delas ameaçadas pelas alterações destrutivas do habitat natural, associadas à exploração desordenada. Investigou-se do ponto de vista etnobotânico a importância do ouricuri (Syagrus coronata e do babaçu (Orbignya phalerata em uma comunidade estabelecida junto ao Parque Nacional Vale do Catimbau, município de Buíque, Pernambuco. A importância atribuída pelo povo local para essas espécies foi analisada sob os seguintes aspectos: número de usos, número de informantes que faziam uso de seus produtos diretos ou indiretos; grau de consenso entre os informantes referentes aos usos relatados. Os dados foram obtidos através de entrevistas semi-estruturadas (60 informantes e de índices baseados em técnicas de consenso do informante. Foram citadas sete categorias de uso: alimento do homem; alimento de animais domésticos; alimento de animais silvestres; construção; artesanato; combustível; medicinal. Apesar da diversidade de usos (Sc = 33; Oph = 25, a importância das duas espécies está relacionada predominantemente ao aproveitamento da amêndoa, como mostram os índices de valor para frutos (Sc = 0,48; Oph = 0,56. Analisando a contribuição de cada espécie para o uso total, o ouricuri apresentou maior valor (8,58 em relação ao babaçu (6,31. Sinais de um processo de erosão do conhecimento foram observados, com vários usos apontados como não mais praticados na comunidade, particularmente os associados ao artesanato.The palm tree flora of Brazilian Northeast includes 80 native species, with a low level of endemism (27.5%, some of them threatened by the destructive alterations of the natural habitat, associated to disordered exploration. This study investigated the importance of the ouricuri (Syagrus coronata and the babaçu (Orbignya phalerata in a community established near the Catimbau Valley National Park, Buíque municipality

Descripción del nido de Scolomys melanops (Rodentia, Cricetidae y su relación con Lepidocaryum tenue (Arecales, Arecaceae

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Edgardo M. Rengifo

2012-11-01

Full Text Available Se describe el nido de Scolomys melanops (Rodentia: Cricetidae, encontrado en el Nororiente de Perú en un hábitat de Colinas bajas. Se identificó tres estructuras en el nido: a Orificio de acceso y salida; b Túnel y c Dormidero, en este último se encontraron restos de frutos, fibras del pedúnculo y tallos de Lepidocaryum tenue (Arecales: Arecaceae “Irapay”. Se sugiere en base al material vegetal encontrado en el nido, la existencia de una relación de depredación entre el roedor Scolomys melanops y la palmera Lepidocaryum tenue.

Testing the water-energy theory on American palms (Arecaceae using geographically weighted regression.

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Wolf L Eiserhardt

Full Text Available Water and energy have emerged as the best contemporary environmental correlates of broad-scale species richness patterns. A corollary hypothesis of water-energy dynamics theory is that the influence of water decreases and the influence of energy increases with absolute latitude. We report the first use of geographically weighted regression for testing this hypothesis on a continuous species richness gradient that is entirely located within the tropics and subtropics. The dataset was divided into northern and southern hemispheric portions to test whether predictor shifts are more pronounced in the less oceanic northern hemisphere. American palms (Arecaceae, n = 547 spp., whose species richness and distributions are known to respond strongly to water and energy, were used as a model group. The ability of water and energy to explain palm species richness was quantified locally at different spatial scales and regressed on latitude. Clear latitudinal trends in agreement with water-energy dynamics theory were found, but the results did not differ qualitatively between hemispheres. Strong inherent spatial autocorrelation in local modeling results and collinearity of water and energy variables were identified as important methodological challenges. We overcame these problems by using simultaneous autoregressive models and variation partitioning. Our results show that the ability of water and energy to explain species richness changes not only across large climatic gradients spanning tropical to temperate or arctic zones but also within megathermal climates, at least for strictly tropical taxa such as palms. This finding suggests that the predictor shifts are related to gradual latitudinal changes in ambient energy (related to solar flux input rather than to abrupt transitions at specific latitudes, such as the occurrence of frost.

ACCEPTANCE OF GUARIROBA [Syagrus oleracea (Mart. Becc.] PALM HEART IN PRESERVES OF DIFFERENT ORGANIC ACIDS ACEITAÇÃO DO PALMITO DE GUARIROBA [Syagrus oleracea (Mart. Becc.] EM CONSERVAS SOB DIFERENTES ÁCIDOS ORGÂNICOS

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Nilson Gomes Jaime

2007-12-01

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The objective of this study was to evaluate the acceptation of guariroba [Syagrus oleracea (Mart. Becc.] palm heart preserved, acidified with organic the acids acetic, citric monohydrate, dl-lactic 85%, and dl-malic and L(+-tartaric. The 75 preserves of guariroba were processed, packed in glass bottles, immersed in brine acidified with different organic acids, in quantities sufficient to lower the pH of the mixture to about 4.3, projected for balance. The experiment was completely randomized, with five treatments and fifteen repetitions. Six glasses of palm hearts at random were used to determine the stabilizing pH of the preserves. Nine glasses were used to assess the acceptance of preserved guariroba and other physical and chemical analyses. The acceptance was evaluated through a tasting portion of approximately 50 g of the product, based on a hedonic scale of seven levels, applied to 500 not trained volunteers. All treatments have had acceptance exceeding 80% among judgers used to guariroba consumption, and over 65% among non-consumers. The treatment with malic acid (pH 3.50 obtained lower acceptance than those acidified with acetic (pH 4.01, citric (pH 3.67, lactic (pH 3.88, and tartaric acids (pH 3.43, which did not differ significantly among them. In such levels of pH, the costs of acidification with lactic acid, citric acid, and acetic acid were equivalent among them and lower than those processed with malic and tartaric acids.

KEY-WORD: Palmetto; canned heart-of-palm; botulism.

O objetivo deste trabalho foi avaliar a aceitação de palmito de guariroba [Syagrus oleracea (Mart. Becc.] em conserva, acidificada

The genus Attalea (Arecaceae of Bolivia: regional ecologic system affinities

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Mónica Moraes R.

2017-10-01

Full Text Available The documentation of the Neotropical species of the Arecaceae family, based on the recent contributions to its taxonomy and its relationship with natural landscapes, updates the spatial patterns to which they adapt in their range of distribution. In this case 121 records of specimens of the 11 species of the genus Attalea of Bolivia and their relationship with 30 ecological systems that approximate their scope of distribution at regional level are released. To this end, the geographical coordinates were systematized, verified and corrected. Localities of all the specimens collected from the genus Attalea in order to compare them with ecological systems, using the ArgGis tools. We then elaborate a dendrogram (species vs. ecological systems using the minimum distance method in the R program. The analysis of the relation of the species with the ecological systems highlights a species that does not compose to the southwest amazon: A. eichleri and that is native to ecological systems of the Cerrado. Among the SW Amazonian Attalea species, A. blepharopus (endemic to Bolivia is isolated from the others and the rest subgroup species according to their presence in forests and savannas, in addition to the subandean and alluvial, as it is for A. princeps, which is found in 17 systems (57%. Eight species of Attalea are common with Peru and 10 with Brazil. It is important to relate the hierarchical grouping of the Attalea species with ecological systems in function of landscape dynamics to document their space patterns and also for their conservation.

The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae

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Marco Ballardini

2013-12-01

Full Text Available The genus Phoenix (Arecaceae comprises 14 species distributed from Cape Verde Islands to SE Asia. It includes the economically important species Phoenix dactylifera. The paucity of differential morphological and anatomical useful characters, and interspecific hybridization, make identification of Phoenix species difficult. In this context, the development of reliable DNA markers for species and hybrid identification would be of great utility. Previous studies identified a 12 bp polymorphic chloroplast minisatellite in the trnG(GCC-trnfM(CAU spacer, and showed its potential for species identification in Phoenix. In this work, in order to develop an efficient DNA barcode marker for Phoenix, a longer cpDNA region (700 bp comprising the mentioned minisatellite, and located between the psbZ and trnfM(CAU genes, was sequenced. One hundred and thirty-six individuals, representing all Phoenix species except P. andamanensis, were analysed. The minisatellite showed 2-7 repetitions of the 12 bp motif, with 1-3 out of seven haplotypes per species. Phoenix reclinata and P. canariensis had species-specific haplotypes. Additional polymorphisms were found in the flanking regions of the minisatellite, including substitutions, indels and homopolymers. All this information allowed us to identify unambiguously eight out of the 13 species, and overall 80% of the individuals sampled. Phoenix rupicola and P. theophrasti had the same haplotype, and so had P. atlantica, P. dactylifera, and P. sylvestris (the “date palm complex” sensu Pintaud et al. 2013. For these species, additional molecular markers will be required for their unambiguous identification. The psbZ-trnfM(CAU region therefore could be considered as a good basis for the establishment of a DNA barcoding system in Phoenix, and is potentially useful for the identification of the female parent in Phoenix hybrids.

Diversidad, patrones de uso y conservación de palmas Arecaceae en bosques pluviales del Chocó, Colombia

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Hamleth Valois-Cuesta

2013-12-01

Full Text Available La familia Arecaceae es rica en especies, principalmente en el trópico, y constituye una fuente de recursos para la subsistencia de sus pobladores. En el presente trabajo se estudió la riqueza, diversidad, composición y patrones de uso de la familia Arecaceae en tres localidades de la cuenca media del río Atrato en el Chocó, Colombia, con el fin de obtener información que permita su conservación y uso sostenible. Se registraron 29 especies en 18 géneros, siendo Bactris 24.13 y Wettinia 10.34 los géneros más ricos en especies. El Buey mostró más especies y géneros 23 especies, 17 géneros que Beté 15 y 10 respectivamente y Tanguí 14 y 11 respectivamente. La similitud florística entre localidades fue menor al 45. Las especies con mayor peso ecológico y valor de uso fueron: Euterpe oleracea Mart., Oenocarpus bataua Mart., Attalea allennii H.E. Moore, Manicaria saccifera Gaertn., Bactris gassipaes Kunth y Wettinia quinaria O.F.Cook y Doyle R. Bernal. Las categorías de uso con mayor riqueza de especies e importancia cultural fueron: construcción, alimento y uso artesanal; y los órganos más usados fueron tallos y frutos. Los resultados de este trabajo demuestran que el Atrato Medio posee alta riqueza y diversidad de especies de palmas en un contexto regional y nacional. Sin embargo, la relación entre el número de uso y la importancia ecológica de la especie depende de la localidad, lo que indica que la importancia socio-cultural de la especie puede variar entre grupos humanos que comparten una misma cultura o región biogeográfica. Se publicarán estudios a futuro para determinar el papel del tipo de órgano utilizado como materia prima en la demografía y dinámica ecológica de las poblaciones de palma en el Chocó y otras regiones del Neotrópico.

Phenology, fruit production and seed dispersal of Astrocaryum jauari (Arecaceae in Amazonian black water floodplains

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F. Piedade Maria Teresa

2006-12-01

Full Text Available Astrocaryum jauari Mart. (Arecaceae is one of the commonest palm species occurring in nutritionally poor Amazonian black water floodplains. It is an emergent or subcanopy tree that grows on river banks and slands, with a wide distribution along the entire flooding gradient, tolerating flood durations between 30 and 340 days. The species is important for fish nutrition in the floodplains, and is also used for hearts of palm. In the present study, the auto-ecology of A. jauari w,as analysed over a period of two years in the Anavilhanas Archipelago, Rio Negro, Brazil, with a focus on phenology, fruit production, and seed dispersal. Fruit fall is annual and synchronized with high water levels, with a production of 1.6 ton of fruit ha-1. The fruits are eaten by at least 16 species of fish which either gnaw the pulp, fragment the seed, or ingest the entire fruit, thus acting as dispersal agents. Besides ichthyocory, barochory (with subsequent vegetative propagation is an important dispersal mode, enhancing the occurrence of large masses of individuals in the Anavilhanas islands and in the region of maximum palm heart extraction near BarcelosAstrocaryum jauari Mart. (Arecaceae es una de las especies más comunes de palma en las llanuras de inundación por las llamadas "aguas negras", aguas ricas en taninos que tienen pocos nutrientes para la fauna. Habita el subdosel que se desarrolla en riberas e islas, con una distribución amplia en toda la gradiente de inundación (resiste entre 30 y 340 días bajo el agua. La especie es importante para la nutrición de los peces y en la producción de palmito. La autoecología de A. jauari fue analizada por dos años en el Archipiélago Anavilhanas, río Negro, Brazil, con énfasis en fenología, producción de frutas, y dispersores de semillas. La caída de los frutos es anual y sincronizada con el aumento de los niveles de agua, con una producción de 1.6 ton de fruta ha-1. Las frutas son comidas por al menos de

Effect of adding flours from marolo fruit (Annona crassiflora Mart and jerivá fruit (Syagrus romanzoffiana Cham Glassm on the physicals and sensory characteristics of food bars

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Edson Pablo da SILVA

2016-03-01

Full Text Available Abstract The marolo (Annona crassiflora Mart. and jerivá (Syagrus romanzoffiana Cham Glassm fruits grow in the Cerrado biome, and have important sensory and nutritional characteristics. These fruits are eaten fresh or processed and embedded in ice cream, candy, juices, and liquors. However, their use is very limited and is localized exclusively to their native region. The aim of this study was to evaluate the use of these fruits in food consumer products to improve the nutritional patterns of consumers and extend knowledge thereof. To do this, different levels (0%, 5%, 10%, 15%, and 20% of flour derived from the marolo and jerivá fruits were incorporated into food bars, which were then characterized in terms of their physical of the texture (TPA, porosity, color and sensorial properties. The food bars enriched with marolo and jerivá flours had an intense yellow color and increased hardness relative to the control bars; the porosity of the bars progressively decreased as the amount of flour added increased. The sensorial analysis in the snack bars developed added with the fruits flour no was influence by incorporation this component, showed good averages for the scores evaluated.

Biodiversity conservation in Costa Rica: a correspondence analysis between identified biodiversity hotspots (Araceae, Arecaceae, Bromeliaceae, and Scarabaeinae and conservation priority life zones Conservación de la biodiversidad en Costa Rica: análisis de la correspondencia entre áreas identificadas clave por su biodiversidad (Araceae, Arecaceae, Bromeliaceae y Scarabaeinae y zonas de vida prioritarias para la conservación

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Bert Kohlmann

2010-08-01

Full Text Available This paper undertook an analysis of the distribution of high species richness and areas of endemism based on plants (Araceae, Arecaceae, and Bromeliaceae and dung beetles (Scarabaeinae inhabiting the different Holdridge Life Zones of Costa Rica. Using a geographic information system (GIS we analyzed biogeographic provinces, in terms of their representativity in sampling areas, life zones, and protected areas. Species richness and endemism maps served as a base for conducting a gap analysis and defining 6 different levels of high priority conservation areas. What percentages of these priority areas are under some type of protection or conservation scheme and which of these areas should be enlarged were also investigated. The degree of feasibility that these areas under protection have for enlargement is indicated. A list is included of all the aforementioned registered species for Costa Rica, as well as their presence in the different Holdridge Life Zones and their endemism status. Four areas with the highest species richness were identified, and 3 new areas of endemism are proposed. The most important conservation priority areas are the tropical wet forests on the northeastern lowlands, the Osa Peninsula region, and the premontane wet forest along the Guanacaste, Tilarán and Central mountain ranges. This study clearly demonstrates the need to include and compare different groups of organisms in biodiversity-endemism studies, in order to obtain more robust and finer-grained studies.El presente estudio analiza la distribución de áreas de alta riqueza específica y endemismos basado en plantas (Araceae, Arecaceae, y Bromeliaceae y escarabajos del estiércol (Scarabaeinae, que habitan las diferentes Zonas de Vida de Holdridge en Costa Rica. Mediante el uso de un sistema de información geográfica (SIG analizamos provincias biogeográficas, en relación a la representatividad de las áreas de muestreo, las zonas de vida y las áreas protegidas

Predação de sementes de Allagoptera arenaria (Gomes O'Kuntze (Arecaceae por Pachymerus nucleorum Fabricius (Coleoptera, Chrysomelidae, Bruchinae Seed predation on Allagoptera arenaria (Gomes O'Kuntze (Arecaceae by Pachymerus nucleorum Fabricius (Coleoptera, Chrysomelidae, Bruchinae

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Viviane Grenha

2008-01-01

Full Text Available A predação de sementes da palmeira Allagoptera arenaria (Gomes O'Kuntze, 1891(Arecaceae por Pachymerus nucleorum Fabricius, 1972 foi avaliada de setembro de 2003 a setembro de 2005 no Parque Nacional da Restinga de Jurubatiba (RJ. A biologia e o comportamento de P. nucleorum em A. arenaria e as taxas de predação de sementes foram descritas. Frutos encontrados sob 50 palmeiras foram coletados, mensalmente, em cada uma das duas áreas amostradas no PNRJ (mata de cordão arenoso e formação arbustiva aberta de Clusia Sclthdl, Clusiaceae. A avaliação dos cocos predados foi feita a partir da contagem dos orifícios de saída dos bruquíneos no campo, da emergência dos insetos no laboratório e da abertura dos frutos remanescentes. Através de observações e experimentos em 60 infrutescências, verificou-se que a oviposição de Pachymerus nucleorum em A. arenaria ocorre na infrutescência ainda em desenvolvimento diferentemente de registros na literatura em outras espécies de palmeiras, onde a oviposição ocorre nos frutos no chão. A predação dos frutos por P. nucleorum foi de 29,3% na área de mata de cordão arenoso e 20,6% na formação arbustiva aberta de Clusia. O ciclo de vida de P. nucleorum foi bastante longo e com amplitudes bem grandes dentro de uma mesma amostra, o que sugere uma possível diapausa em alguma fase do seu ciclo de vida.Seed predation on Allagoptera arenaria (Gomes O'Kuntze, 1891(Arecaceae palm by Pachymerus nucleorum Fabricius, 1972 was evaluated from September 2003 to September 2005 at the Parque Nacional da Restinga de Jurubatiba (PNRJ, Rio de Janeiro, Brazil. The biology and behaviour of P. nucleorum on A. arenaria and predation rates were described. Fruits found beneath 50 palms were collected, monthly, for each one of the two sampled areas at PNRJ (ridge forest and Clusia Sclthdl (Clusiaceae open shrubland formation. The evaluation of preyed fruits was done by counting exit holes of Bruchinae in the field

Pollen morphology of the subfamily arecoideae griff. (family-arecaceae) from pakistan and kashmir

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Rasheed, A.A.; Perveen, A.; Abid, R.

2016-01-01

Pollen morphological characters are potentially informative in the systematic of monocotyledons including (Arecaceae), at supra and infra familial level. The pollen morphology of 8 species (subfamily Arecoideae) clearly shows that the qualitative pollen characters (such as aperture, exine pattern and shape) are found to be taxonomically important as compared to the quantitative characters (such as size of the grain and exine thickness).Considerable pollen variations have been found within the subfamily Arecoideae with regard to size, shape, aperture type and exine pattern. For instance, 7 out of 8 species have monosulcate pollen (i.e., 87.5%) and a remaining species (viz., Elaeis guineensis Jacq.) have trichotomosulcate pollen. The pollen are frequently elliptical, but in some cases rounded-triangular pollen were also found. Similarly, there is a great diversity in exine pattern such as punctate, reticulate, vermiculate, spinose, rugulate and perforate or combination of these types have also been found, but the most predominant pattern is the reticulate type. On the basis of pollen aperture, size and exine pattern, four pollen types have been recognized such as Areca-type, Dypsis-type, Cocos-type and Elaies-type. The data obtained from the palynological studies have been analyzed by Agglomerative cluster analysis choosing the Euclidean distance and Ward's method for a group linkage method. The objective of the present work is to classify studied taxa on the basis of pollen characters and to quantify the species relationships representing the subfamily Arecoideae based on numerical techniques. (author)

Study of the physical and physicochemical characteristics of fruits of the licuri palm (Syagrus coronata (Mart. Becc. found in the Atlantic Forest of Minas Gerais, Brazil

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Galdino Xavier de Paula Filho

2015-09-01

Full Text Available AbstractThe Atlantic Forest has species of native fruits, consumed fresh and processed, which have an important contribution to food sovereignty of families that consume it. This study examined the physical and physicochemical characteristics, proximate composition, concentration of carotenoids, vitamin C, vitamin E and minerals in the pulp and kernels of fruits of licuri (Syagrus coronata (Mart. Becc.. Titratable acidity was analyzed by volumetric neutralization, soluble solids by refractometry, proteins by the micro-Kjeldahl method, lipids by gravimetry using soxhlet, dietary fiber by non-enzymatic gravimetry, carotenoids and vitamin C by HPLC-DAD, vitamin E by HPLC-fluorescence, and minerals by ICP-AES. Pulp were a source of Zn (0.95 mg 100–1, a good source of fiber (6.15 g 100–1, excellent source of provitamin A (758.75 RAE 100–1, Cu (0.69 mg 100–1, Fe (3.81 mg 100–1, Mn (3.40 mg 100–1 and Mo (0.06 mg 100–1. The kernel were a source of Fe (3.36 mg 100–1 and excellent source of Mn (6.14 mg 100–1, Cu (0.97 mg 100–1 and Mo (0.07 mg 100–1. The nutritional value and wide availability of licuri fruit make it an important resource for reducing food insecurity and improving nutrition of the rural population and other individuals who have access to it.

Overcoming seed dormancy using gibberellic acid and the performance of young Syagrus coronata plants under severe drought stress and recovery.

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Medeiros, Maria J; Oliveira, Marciel T; Willadino, Lilia; Santos, Mauro G

2015-12-01

Syagrus coronata, a native palm tree of the Brazilian semi-arid region, exhibits low germinability due to seed dormancy. This study aimed to increase the germinability, analyze the morphology of seedlings and evaluate the performance of young plants under a water deficit. We used immersion in water and gibberellic acid (GA3) as pyrene (seed with endocarp) pre-germination treatments, and we analyzed the water relations, gas exchange, chlorophyll fluorescence and carbon balance components of young plants under drought and rehydration conditions. The immersion of pyrenes in 0.3 mM GA3 solution for 24 h enhanced the emergence and survival of plants and the emergence rate index. The germination of S. coronata is of the remote tubular type, and seedling growth originates with the protrusion of the cotyledon petiole, followed by the subsequent emergence of the root, leaf sheaths and eophyll. The plants exhibited high tolerance to no irrigation for 37 days, which was attributed to strong stomatal control, a higher proportion of energy dissipation and a higher content of photoprotective pigments. Despite the reduced stomatal conductance (regardless of soil water availability), the photosynthetic rate remained high throughout the day, which indicated a low correlation between these two parameters. After rehydration, we observed that both the leaf water content and photosynthesis recovered, which showed an absence of irreversible damage of the photosynthetic apparatus. The use of 0.3 mM GA3 is recommended as a treatment for overcoming seed dormancy in this species. Young S. coronata plants showed high tolerance during drought and resilience after rehydration by adjusting their leaf metabolism, which could explain the endemism of this species in semi-arid regions and its ability to remain evergreen throughout the year. Furthermore, with high photosynthetic rate in the most favorable time of day, even under drought stress. Copyright © 2015 Elsevier Masson SAS. All rights

[Pollination ecology of three sympatric species of Oenocarpus (Arecaceae) in the Colombian Amazon].

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Núñez A, Luis Alberto; Isaza, Carolina; Galeano, Gloria

2015-03-01

The understanding of pollination mechanisms is vital for developing management and conservation actions of economically important species. In order to understand the pollination mechanisms of the promising palms in the genus Oenocarpus (Arecaceae), we studied floral morphology and biology, of three sympatric species in the Colombian Amazon: O. bataua, O. balickii and O. minor. During the period 2010-2012 we made direct and continuous observations of inflorescences (visitors, pollinators, and reproductive success) of the three species in every development phase. We determined the association of the palms with their floral visitors through a complex or interaction network, whereas specificity or preference of the insects for each individual palm was assessed through paired similarity analysis, similarity analysis (ANOSIM), and ordering analysis based on nonmetric multidimensional scaling (NMSD). The three species flowered throughout the year; their inflorescences have long rachillae that hang close to each other from a short rachis, and they bear flowers in dyads or triads. Inflorescences are protandrous, thermogenic; anthesis takes place during daytime but pollination is nocturnal. We recorded 79 species of insects, mainly beetles, 33 of which visited O. balickii, 63 visited O. bataua, and 33 visited 0. minor. Although they shared some visitors, their abundance during the pistillate phase, as well as their pollen loads showed that only a few species of Curculionidae and Nitidulidae are the principal pollinators of the three studied species. Differences in network structure between staminate and pistillate phases, as well as difference in abundance found with the ANOSIM and NMSD similarity tests, suggest a high specificity of pollinators, leading to reproductive isolation among.the three species. Because all pollinating beetles were found to develop their life cycles within the inflorescences, we hypothesize the occurrence of a specialized system of mutual dependence

Areca catechu L. (Arecaceae): a review of its traditional uses, botany, phytochemistry, pharmacology and toxicology.

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Peng, Wei; Liu, Yu-Jie; Wu, Na; Sun, Tao; He, Xiao-Yan; Gao, Yong-Xiang; Wu, Chun-Jie

2015-04-22

Areca catechu L. (Arecaceae), widely distributed in South and Southeast Asia, is a popular traditional herbal medicine that can be chewed for the purpose of dispersing accumulated fluid in the abdominal cavity and killing worms. The present paper aims to provide an up-to-date review on the traditional uses and advances in the botany, phytochemistry, pharmacology and toxicology of this plant. Furthermore, the possible trends and a perspective for future research of this plant are also discussed. A literature search was performed on A. catechu based on classic books of herbal medicine, PhD. and MSc. dissertations, government reports, the state and local drug standards, scientific databases including Pubmed, SciFinder, Scopus, the Web of Science, Google Scholar, and others. Various types of information regarding this plant are discussed in corresponding parts of this paper. In addition, perspectives for possible future studies of A. catechu are discussed. The seeds of A. catechu (areca nut) have been widely used in clinical practice in China, India and other South and Southeast Asian Countries. Currently, over 59 compounds have been isolated and identified from A. catechu, including alkaloids, tannins, flavones, triterpenes, steroids, and fatty acids. The extracts and compounds isolated from A. catechu have many pharmacological activities. These include antiparasitic effects, anti-depressive effects, anti-fatigue effects, antioxidant effects, antibacterial and antifungal effects, antihypertensive effects, anti-inflammatory and analgesic effects, anti-allergic effects, the promotion of digestive functions, suppression of platelet aggregation, regulatory effects on blood glucose and lipids, etc. Although arecoline is the primary active constituent of A. catechu, it is also the primary toxic compound. The main toxicities of arecoline are the promotion of oral submucosal fibrosis (OSF) and cytotoxic effects on normal human cells, which involve inducing apoptosis. As an

Wild species of interest for tourism in Manabí and Guayas, Ecuador

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Sonia Rosete Blandariz

2018-01-01

Full Text Available Ethnobotany is the discipline that studies the relationships between man and plants. The purpose of the study was to identify the uses of wild species of interest for tourism in Manabí and Guayas. Interviews, walks and field observations were carried out in areas with little disturbed vegetation. Seventeen species were reported with at least one recognized use, some used for the manufacture of artisanal, ornamental objects, and the majority in danger of extinction due to the degradation of their habitat. The species of greatest interest for tourism due to their beauty and degree of scarcity are Attalea colenda (O.F.Cook Balslev & A.J.Hend. (Arecaceae, Brassia jipijapensis Dodson & N.H.Williams (Orchidaceae, Ceiba trischistandra (A. Gray Bakhuisen (Malvaceae, Erythrina megistophylla Diels (Fabaceae, Erythrina smithiana Krukoff Fabaceae, Macroclinium manabinum (Dodson Dodson (Orchidaceae, Passiflora sprucei Mast. (Passifloraceae, Phytelephas aequatorialis Spruce (Arecaceae and Prestoea acuminata (Willd. H.E.Moore var. acuminata (Arecaceae.

Phoenix dactylifera L. spathe essential oil: Chemical composition and repellent activity against the yellow fever mosquito

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Date palm, Phoenix dactylifera L. (Arecaceae), grows commonly in the Arabian Peninsula and is traditionally used to treat various diseases. The aim of the present study was to identify chemical composition of the essential oil and to investigate the repellent activity. The essential oil of P. dacty...

Anatomía micrográfica del folíolo de la palma neotropical Bactris gasipaes (Arecaceae

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Francisco Paulo Chaimsohn

2008-06-01

Full Text Available Se estudiaron hojas de plantas jóvenes cultivadas para producción de palmito de la variedad Diamantes 10 de ascendencia del Alto Amazonas. Se estudió la anatomía micrográfica foliar y la frecuencia de estomas en la superficie adaxial y abaxial de los foliolos de Bactris gasipaes provenientes de una plantación experimental en un régimen de fertilización química y una densidad de población de 5000 plantas por hectárea, en Guápiles, Costa Rica. Se confirmó la presencia de rafidios y células buliformes en la superficie abaxial de las láminas foliares y del tejido hipodermico en ambos lados. Confirmamos la ausencia de la anatomía Krantz en esta especie, reafirmando la fotosíntesis C3 como mecanismo metabólico en la familia Palmaceae. La densidad promedio de estomas en la superficie abaxial fue de 96,87±16,31 estomas.mm-2 y en la superficie adaxial fue de 14,20±4,05 estomas.mm-2.Leaf micrografic anatomy of the Neotropical palm Bactris gasipaes (Arecaceae. The economic importance of the palm Bactris gasipaes is growing in the Neotropoical region. We collected leaflets from plants under a chemical fertilization regime and a population of 5000 plants per hectare, in Costa Rica. The variety, Diamantes 10, has an ascendency fom the upper Amazon basin. We used Harries hematoxiline, eocine and standard light microscopy techniques. The presence of raphids and buliform cells was confirmed for the abaxial surface of the leaflets and for the hypodermic tissue on both sides. The absence of the Krantz anatomy was confirmed in consistence with former observations about the C3 photosynthesis in other species of Palmaceae. The average stomatal density on the abaxial surface was 96.87±16.31 stomata.mm-2 and 14.20±4.05 in the adaxial surface. Rev. Biol. Trop. 56 (2: 951-959. Epub 2008 June 30.

Revision of Bondariella Hustache & Bondar (Coleoptera: Curculionidae), with descriptions of the first species from the Amazon and notes on natural history.

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Valente, Roberta De Melo; Cordeiro Júnior, Mariano Brandão

2015-09-15

Bondariella Hustache & Bondar, 1942 is revised. In addition to the redescription of the genus and its four previously known species, we report and describe the first species from the Amazonian region: Bondariella rudicula sp. nov. and Bondariella crenata sp. nov. We also provide a key to the species, illustrations and notes on natural history. All six species of Bondariella have been collected on palm flowers from Brazil, with the previously known species having only been recorded from species of Syagrus Mart. from the Atlantic Forest and Caatinga biomes. The two new species have only been recorded from species of Euterpe Mart. from the Amazon biome. Future work may prove if the associations with Syagrus and Euterpe are specific to the biomes.

[Bipolaris bicolor (Mitra) Shoemaker: Species associated to folial spot in pupunha palm (Bactris gasipaes Kunth) in Brazil.].

Science.gov (United States)

Rodríguez-Morejón, K; Kimati, H; Fancelli, M I

1998-03-01

One species of hiphomycetos group, belonging to the genus Bipolaris Shoemaker that was identified like Bipolaris bicolor (Mitra) Shoemaker is recorded for the first time on pupunha palm (Bactris gasipaes Kunth) from Brazil. The comparison with other close species reported like pathogenic folial spot in genus Arecaceae is made. Its morphological and cultural characteristics are described.

Noticias botánicas colombianas, II: Especies nuevas y críticas

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Dugand Armando

1943-12-01

Full Text Available Orbignya Cuatrecasana Dugand, sp. nov. / Syagrus Sancona. (RBK. Karst. / Synechanthus Warscewiczianus / Manicaria saccifera / Socratea elegans / Trichilia lamellulata Dugand, sp. nov. / Euphorbia mesembryanthemifolia / Pseudobombax subandinum Dugand, sp, nov. / Bombax obtusum / Peschiera cymosa (Jacq. Dugand, comb. nov.

A new species of Callispa Baly (Coleoptera, Chrysomelidae, Cassidinae, Callispini) infesting coconut palm ( Cocos nucifera L.) in India

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Shameem, K. M.; Prathapan, K. D.

2013-01-01

Abstract Callispa keram sp. n. infesting coconut palm (Cocos nucifera L.) in Kerala, India is described and illustrated. Livistona chinensis R.Br. and Syagrus romanzoffiana (Cham.) Glassman are reported as additional host plants. PMID:23653522

Myxomycetes em Palmeiras (Arecaceae Myxomycetes on palm trees (Arecaceae

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Maria Helena Alves

1996-07-01

Full Text Available As palmeiras oferecem um ecossistema especializado que abriga organismos variados, incluindo Myxomycetes. Este trabalho relata doze espécies de Myxomycetes encontradas em folhas mortas, espata e estipe de Acrocomia intumescens Drude (macaúba, Copernicea prunifera (Mill. H. E. Moore (carnaúba, Mauritia flexuosa Mart, (buriti e Orbygnia phalerata Mart, (babaçu. Constitui-se área de coleta o Município do Crato, Ceará, Nordeste do Brasil (7º 30'00" S, 39º 00' 00" W, 400-1200 m de altitude. Coletas aleatórias foram efetuadas e as frutificações foram pesquisadas em órgãos vivos ou mortos das palmeiras. Exsicatas foram depositadas no Herbário UFP (Departamento de Botânica da Universidade Federal de Pernambuco, Recife - PE, Brasil. As espécies registradas pertencem aos gêneros Ceratiomyxa (1, Dictydium (1, Arcyria (1, Hemitrichia (1, Badhamia (1, Fuligo (1, Physarum (3, Stemonitis (2 e Comatricha (1. Ceratiomyxa fruticulosa (Miill. Macbr., Physarum stellatum (Mass. Mart., Stemonitis pallida Win. e Comatricha typhoides (Bull. Rost. são referidas pela primeira vez para este tipo de substrato. Este trabalho eleva para 35 o número de espécies de Myxomycetes assinaladas sobre palmeiras até o momento.Palm trees are specialized ecossystems which hosts a wide variety of organisms, including Myxomycetes. This paper reports twelve species of Myxomycetes found on dead leaves, spathes and stipitis of Acrocomia intumescens Drude, Copernicea prunifera (Mill. H. E. Moore, Mauritia flexuosa Mart., and Orbygnia phalerata Mart. The collecting area is located in the Municipality Crato of Ceará State, Northeastern Brazil (7º 30'00" S, 39º 00' 00" W, 400-1200 m altitude. Samples were taken at random and Myxomycetes fructifications were searched on dead and living organs of palm trees. Exsiccatae have been deposited in the Herbarium UFP (Department of Botany, Federal University of Pernambuco, Recife-PE, Brazil. The species registered belong to the genera Ceratiomyxa (1, Dictydium (1, Arcyria (1, Hemitrichia (1, Badhamia (1, Fuligo (1, Physarum (3, Stemonitis (2 and Comatricha (1. Ceratiomyxa fruticulosa (Miill. Macbr., Stemonitis pallida Win, Comatricha typhoides (Bull. Rost. and Physarum stellatum (Mass. Mart, are reported for the first time on this substrate. This study raises to 35 the number of Myxomycetes species occurring on palm trees substrates.

Palmeiras (Arecaceae das restingas do Estado do Rio de Janeiro, Brasil Palms (Arecaceae from the restingas of Rio de Janeiro State, Brazil

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Ricardo Carneiro da Cunha Reis

2006-09-01

Full Text Available Neste trabalho foram coletadas, identificadas e sistematizadas as palmeiras das restingas do estado do Rio de Janeiro. Para a coleta de material, foram eleitas cinco estações de coleta consideradas representativas em termos de ocorrência de palmeiras. Foram identificadas 11 espécies, as quais podem ser reconhecidas pelo uso da chave dicotômica fornecida, e confirmadas pelas descrições e fotos apresentadas. O tratamento taxonômico das espécies encontra-se complementado por informações de distribuição geográfica, ecologia, nomes vulgares, e listas dos espécimes de herbário examinados.Palms of the restingas of Rio de Janeiro State were collected, identified and treated taxonomically. The plants were collected at five sites that are representative in terms of palm species occurrence. The 11 species can be identified using the dichotomous key and confirmed using descriptions and photos. The taxonomic treatment is accompanied by additional information on geographic distribution, ecology, common names, and lists of herbarium specimens examined.

Composição florística e estrutura fitossociológica de dois fragmentos de floresta de restinga no Município de Bertioga, SP, Brasil Floristic and phytosociological analysis of two fragments of restinga forest in Bertioga, São Paulo State, Brazil

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Daniela Guedes

2006-06-01

Full Text Available O presente trabalho foi realizado em dois fragmentos de floresta de restinga (floresta inundável e floresta não inundável no Município de Bertioga, Estado de São Paulo, em uma área com extensão total aproximada de 3.000.000 m², pertencente ao condomínio residencial Riviera de São Lourenço. Para o levantamento fitossociológico foram instaladas 48 parcelas de 10×10 m distribuídas em blocos de 20×30 m e de 10×30 m, onde foram amostrados todos os indivíduos lenhosos com perímetro do caule à altura do peito (PAP igual ou superior a 10 cm. Foram levantados 893 indivíduos distribuídos em 83 espécies e 31 famílias. As espécies da floresta não inundável com maior valor de importância (VI foram: Manilkara subsericea (Mart. Dubard, Amaioua intermedia Mart. ex K. Schum., Didymopanax angustissimum A. Sampaio, Miconia cubatanensis Hoehne, Euterpe edulis Mart., Syagrus pseudococos (Raud. Glassm., Bactris setosa Mart., Guarea macrophylla Vahl. e Nectandra oppositifolia Ness & Mart. ex Mez. e na floresta inundável: Eriotheca pentaphylla (Vell. emend K. Schum. A. Robyns, Calophyllum brasiliense Cambess., Syagrus pseudococos, Tabebuia cassinoides (Lam. DC., Manilkara subsericea, Tabebuia obtusifolia (Cham Bureau, Didymopanax angustissimum, Sloanea guianensis (Aubl. Benth. e Amaioua intermedia. O índice de diversidade de Shannon (H' foi de 3,50 nats/ind. para a floresta inundável e 3,70 nats/ind. para a floresta não inundável.A phytosociological investigation in two fragments of restinga forest (flooded and nonflooded in Riviera de São Lourenço complex, Bertioga, São Paulo, was carried out. Each fragment in the phytosociological survey was studied using 10×10 m plots. These plots were distributed in blocks of 20×30 m and 10×30 m, for a total area of 4,800 m². The 893 individuals sampled in both fragments were distributed in 83 species and 31 families. The species with highest importance values (IV in the flooded restinga

Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Areceaceae) identifies Syagrus as sister to the coconut

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The origins of the coconut (Cocos nucifera) have been one of the "abominable mysteries" of palm systematics for decades. Previous studies with predominantly plastid genes have indicated an American ancestry for the coconut but with weak support and ambiguous sister relationships. We used primers d...

Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome.

Science.gov (United States)

Aljohi, Hasan Awad; Liu, Wanfei; Lin, Qiang; Zhao, Yuhui; Zeng, Jingyao; Alamer, Ali; Alanazi, Ibrahim O; Alawad, Abdullah O; Al-Sadi, Abdullah M; Hu, Songnian; Yu, Jun

2016-01-01

Coconut (Cocos nucifera L.), a member of the palm family (Arecaceae), is one of the most economically important crops in tropics, serving as an important source of food, drink, fuel, medicine, and construction material. Here we report an assembly of the coconut (C. nucifera, Oman local Tall cultivar) mitochondrial (mt) genome based on next-generation sequencing data. This genome, 678,653bp in length and 45.5% in GC content, encodes 72 proteins, 9 pseudogenes, 23 tRNAs, and 3 ribosomal RNAs. Within the assembly, we find that the chloroplast (cp) derived regions account for 5.07% of the total assembly length, including 13 proteins, 2 pseudogenes, and 11 tRNAs. The mt genome has a relatively large fraction of repeat content (17.26%), including both forward (tandem) and inverted (palindromic) repeats. Sequence variation analysis shows that the Ti/Tv ratio of the mt genome is lower as compared to that of the nuclear genome and neutral expectation. By combining public RNA-Seq data for coconut, we identify 734 RNA editing sites supported by at least two datasets. In summary, our data provides the second complete mt genome sequence in the family Arecaceae, essential for further investigations on mitochondrial biology of seed plants.

Frugivoria e dispersão de sementes pelo lagarto teiú Tupinambis merianae (Reptilia: Teiidae Frugivory and seed dispersal by the tegu lizard Tupinambis merianae Reptilia: Teiidae

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Everaldo Rodrigo de Castro

2004-01-01

Full Text Available Os lagartos teiús possuem uma dieta generalista, podendo agir como importantes dispersores de sementes em florestas semidecíduas do sudeste do Brasil. Foram estudadas a frugivoria e a dispersão de sementes de lagartos teiús usando animais em cativeiro, através da oferta de frutos de uma floresta semidecídua. Frutos de trinta espécies vegetais foram oferecidos aos lagartos em cativeiro, com diâmetro variando de 0,81 a 10,0 cm. Não foram encontradas diferenças estatísticas na germinação entre as sementes que passaram pelo trato digestivo do lagarto e as controle de Eugenia uniflora (chi²= 0.69, P>0.50, Genipa americana (chi²= 6.4, P>0.975, Cereus peruvianus (chi²= 0.018, P>0.10, e Solanum viarum (chi²= 6.23, P>0.975. O tempo de retenção da semente no tubo digestivo do teiú variou de 22 a 23 h para Solanum lycocarpum e 43 a 44 h para Syagrus romanzoffiana. Nossos resultados indicam que o lagarto teiú tem potencial para agir como um importante dispersor de sementes nos trópicos.Tegu lizards have a generalist diet and may play an important role as seed dispersers in semideciduous forests in south-east Brazil. We studied the frugivory and seed dispersal of tegu lizards using captive animals and offering wild fruits from a semideciduous forest. Thirty fruit species were eaten by the lizards in captivity, ranging from 0.81 to 10.0 cm (fruit diameter. Even large fruit adapted to dispersal by large mammals were swallowed (ex. Syagrus oleracea. There were no statistical differences in seed germination between seeds that passed through the lizard gut and the control in Eugenia uniflora (chi2 = 0.69, P>0.50, Genipa americana (chi2 = 6.4, P>0.975, Cereus peruvianus (chi2 = 0.018, P>0.10, and Solanum viarum (chi2 = 6.23, P>0.975. Seed retention time in the tegu gut ranged from 2224 h (Solanum lycocarpum to 4344 h (for Syagrus romanzoffiana. Our results indicate that tegu lizards have a potential to be an important seed dispersers in the

Borassus aethiopum Mart, Arecaceae

African Journals Online (AJOL)

SARAH

28 févr. 2014 ... Gbesso et al. J. Appl. Biosci. 2014. Distribution géographique de Borassus aethiopum Mart et caractérisation phytoécologique de leurs habitats du Benin. 6105. Sc1. Sc2. Sc3. Sc4. Sc5. Sc6. Sc7. Sc8. Ss1. Ss2. Ss4. Ss5. Ss7. Ss8. Ss9. Ss10. Sg1. Sg2. Sg3. Sg4. Sg5. Sg6. Sg7. Sg8. Sg9. Sg10. Sg11.

Growth and development of true sago palm (Metroxylon sagu Rottbøll) : with special reference to accumulation of starch in the trunk : a study on morphology, genetic variation and ecophysiology, and their implications for cultivation

NARCIS (Netherlands)

Schuiling, D.L.

2009-01-01

Keywords: Metroxylon sagu, Arecaceae, starch crops, plant growth and development, plant morphology, inflorescence structure, electron microscopy, phenological scale, genetic variation, plant taxonomy, folk taxonomy, ethnobotany, leaf area, leaf area index, starch accumulation, starch distribution,

In vitro evaluation of inhibitory effect of Phoenix dactylifera bark ...

African Journals Online (AJOL)

investigate its in vitro inhibitory effects on lipid peroxidation in the brain, liver, and kidney tissues of rat, ... diseases associated with lipid peroxidation such as cancers and Alzheimer's disease, but further studies ... the family Arecaceae.

Levantamento da flora apícola em Santa Luzia do Paruá, Sudoeste da Amazônia, Maranhão Survey of bee flora in Santa Luzia do Paruá, Southwest Amazonia, Maranhão

Directory of Open Access Journals (Sweden)

Luiz Junior Pereira Marques

2011-03-01

. The pollen types were identified and counted in honey samples to determine mean frequency of the three apiaries. In the pollen samples, pollen types were identified by comparison with the pollen of plants (flower buds deposited in the reference collection. The main plant families used as floral resource by A. mellifera are Amaranthaceae, Arecaceae, Asteraceae, Urticaceae, Euphorbiaceae, Lamiaceae, Fabaceae-Mimosoideae, Flacourtiaceae, Myrtaceae, Poaceae and Rubiaceae. In the honey samples, the pollen types of Mimosa pudica, Borreria and members of the Arecaceae family were most important during the rainy season. At harvest time (transition between rainy and dry season, Hyptis, Borreria, and an undetermined pollen type of the Asteraceae family were most important. The pollen types that show major constancy in the sample pollen were Euterpe oleracea, Asteraceae type 1, Mimosa pudica and Borreria.

Drug: D06782 [KEGG MEDICUS

Lifescience Database Archive (English)

Full Text Available D06782 Crude ... Drug Areca (JP17); Areca (TN) Arecoline [CPD:C10129], Arecaidine ...s: E00152 Therapeutic category: 5100 ... Arecaceae (palm family) Areca seed Major component: Arecoline [CPD:C10129] ... PubChem: 47208433 ...

Triterpenes and flavonoids from the roots of Mauritia flexuosa

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Hector H. F. Koolen

2011-11-01

Full Text Available Mauritia flexuosa L. f., Arecaceae, is an endemic species of South America. This species was studied with the intent to isolate the constituents of its roots. After the fractionation of the n-hexane and methanolic extracts from the roots of M. flexuosa, six triterpenes were obtained: friedelin, taraxerone, lupenyl acetate, lupenone, betulin and betulinic acid, along with three flavonoids: rutin, quercitrin and quercetin. All the compounds were identified by analysis of NMR and MS data and comparison with the literature. All those compounds are been reported for the first time in Mauritia, and the chemosystematic significance of the flavonoids isolated in this genus is discussed.

Triterpenes and flavonoids from the roots of Mauritia flexuosa

Directory of Open Access Journals (Sweden)

Hector H. F. Koolen

2012-02-01

Full Text Available Mauritia flexuosa L. f., Arecaceae, is an endemic species of South America. This species was studied with the intent to isolate the constituents of its roots. After the fractionation of the n-hexane and methanolic extracts from the roots of M. flexuosa, six triterpenes were obtained: friedelin, taraxerone, lupenyl acetate, lupenone, betulin and betulinic acid, along with three flavonoids: rutin, quercitrin and quercetin. All the compounds were identified by analysis of NMR and MS data and comparison with the literature. All those compounds are been reported for the first time in Mauritia, and the chemosystematic significance of the flavonoids isolated in this genus is discussed.

Flavonoids from leaves of Mauritia flexuosa

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Djalma M. de Oliveira

2013-09-01

Full Text Available The chromatographic fractionation of the Mauritia flexuosa L. f., Arecaceae, leaves extract, a plant known by the name of buriti palm tree, resulted in the isolation of six flavonoids: tricin-7-O-rutinoside, apigenin-6-C-arabinoside, 8-C-glucoside (isoschaftoside, kaempferol-3-O-rutinoside (nicotiflorine, quercetin-3-O-rutinoside (rutin, luteolin-8-C-glucoside (orientin and luteolin-6-C-glucoside (isoorientin. The flavonoids were found out and previously reported as constituents of the Arecaceae family plants, but the occurrence of C-glucoside flavonoids, in the species being analyzed, is described for the first time on this study. The structural elucidations of all of the isolated compounds were performed by means of the comparison of their spectral data (¹H and 13C NMR, UV and ESI-MS with those ones of the literature.

Ritual uses of palms in traditional medicine in sub-Saharan Africa: a review

DEFF Research Database (Denmark)

Gruca, Marta; van Andel, Tinde; Balslev, Henrik

2014-01-01

Palms (Arecaceae) are prominent elements in African traditional medicines. It is, however, a challenge to find detailed information on the ritual use of palms, which are an inextricable part of African medicinal and spiritual systems. This work reviews ritual uses of palms within African ethnomed......Palms (Arecaceae) are prominent elements in African traditional medicines. It is, however, a challenge to find detailed information on the ritual use of palms, which are an inextricable part of African medicinal and spiritual systems. This work reviews ritual uses of palms within African...... guineensis, Hyphaene coriacea, H. petersiana, Phoenix reclinata, Raphia farinifera, R. hookeri, and R. vinifera. In some rituals, palms play a central role as sacred objects, for example the seeds accompany oracles and palm leaves are used in offerings. In other cases, palms are added as a support to other...

The influence of socioeconomic factors on the conservation of traditional knowledge: a cross scale comparison of palm use in Northwestern South America

DEFF Research Database (Denmark)

Paniagua-Zambrana, Narel; Cámara-Leret, Rodrigo; Bussmann, Rainer W.

2014-01-01

We explored the power of 14 socioeconomic factors for predicting differences in traditional knowledge about palms (Arecaceae) at the personal, household, and regional levels in 25 locations in the Amazon, Andes, and Chocó of northwestern South America. Using semistructured interviews, we gathered...

Environ: E00152 [KEGG MEDICUS

Lifescience Database Archive (English)

Full Text Available E00152 Areca (JP17) Crude drug Arecoline [CPD:C10129], Arecaidine [CPD:C10128], Gu..., Capric acid [CPD:C01571] Areca catechu [TAX:184783] Same as: D06782 Arecaceae (palm family) Areca seed Major component: Arecoline [CPD:C10129] ...

Evolutionary history of Arecaccea tribe Cocoseae inferred from seven WRKY transcription factors

Science.gov (United States)

The Cocoseae is one of 13 tribes of Arecaceae subfam. Arecoideae, and contains a number of palms with significant economic importance, including the monotypic and pantropical Cocos nucifera, the coconut, and African oil palm (Elaeis guineensis). Using seven single copy WRKY transcription factor gen...

Phylogenetic analysis of six WRKY transcription factor loci across the spiny cocosoid palm subtribes Bactridinae and Elaeidinae (Areceaceae, Cocoseae),and comparison of several gene tree/species tree reconciliation approaches

Science.gov (United States)

The Cocoseae is one of 13 tribes of Arecaceae subfamily Arecoideae, and contains a number of palms with significant economic importance, including the monotypic and pantropical Cocos nucifera, the coconut, and African oil palm (Elaeis guineensis). Using seven single copy WRKY transcription factor g...

First report on the whitefly, Aleurodicus pseudugesii on the coconut palm, Cocos nucifera in Brazil.

Science.gov (United States)

de Omena, Rose Paula Mendonça; Guzzo, Elio Cesar; Ferreira, Joana Maria Santos; de Mendonça, Fernando Antônio Cavalcante; de Lima, Aurino Florencio; Racca-Filho, Francisco; Santana, Antônio Euzébio Goulart

2012-01-01

The coconut palm, Cocos nucifera L. (Arecales: Arecaceae), is currently grown extensively throughout the intertropical zones of the world, including Brazil, where it constitutes an important source of income for growers. Although whiteflies are not normally considered coconut pests, these insects can damage crops directly by sucking the sap, which weakens the plant; indirect damage may be caused by sooty mold formation over the excreted honeydew and by the transmission of pathogens. Whiteflies have infested coconut plants in the northeastern, northern, and southeastern regions of Brazil. Infested materials were collected and the causative insect was identified as Aleurodicus pseudugesii Martin (Hemiptera: Aleyrodidae). This is the first report of A. pseudugesii in Brazil as a pest of the coconut palm.

BIOLOGICAL AND ENVIRONMENTAL PECULIARITIES OF INTRODUCTION OF WASHINGTONIA FILIFERA (LIND. EX ANDR. H. WENDL. EX BARY AT THE SOUTHERN COAST OF CRIMEA

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Yuriy V. Plugatar

2018-01-01

Full Text Available Abstract. Aim of this research is to study winter resistance, drought resistance, resistance to fungal diseases and harmful insects of Washingtonia filifera (Lind. ex Andr., H. Wendl. ex A. Bary, 1879 and to examine the possibility of the subsequent selection using the experimental mutagenesis for increasing its frost resistance at the Southern Coast of the Crimea (SCC. Material and methods. The material and objects of our research were the collection plantations of Washingtonia filifera in the Arboretum of Nikitsky Botanical Garden (NBG and parks of the South Coast of Crimea. Research methods: comparative-ecological, biometric, analytical and visual. To achieve the objective, the following results were obtained in the course of the studies. The history of introduction of this species in the NBG has been described and its occurrence at the Southern Coast of the Crimea (SCC shown. An analysis of the quantitative biometric indicators of the leaves’ growth and die-back on average over the vegetation period on the basis of phenological observations over the test plants has been carried out taking into consideration the existing agricultural background. The reasons and factors influencing the frost resistance of this species depending on the combination of the set of meteorological indicators causing a certain level of frosting depending not only on the minimum negative temperatures but also on the soil and atmospheric moisture have been identified. Thresholds values of the impact of extreme negative temperatures for the Washingtonia filifera at the lethal and sub-lethal levels have been identified. Danger of infection of the representatives of the Arecaceae family (Arecaceae C.H. Schultz with the new types of dangerous phytophages has been identified. The possibility of its selection with the use of a mutagen – colchicine has been shown. Main conclusions. The criteria have been outlined which will give the opportunity in the future to provide

Journal of Earth System Science | Indian Academy of Sciences

Indian Academy of Sciences (India)

A new species of fossil palm rhizome having root-mat under the organ genus Rhizopalamoxylon (Rhizopalmoxylon nypoides sp. nov.) is reported. The specimen shows the closest resemblance with the modern monotypic genus Nypa Wurmb of the Arecaceae. The specimen was collected from the late Maastrichtian–early ...

In vitro evaluation of inhibitory effect of Phoenix dactylifera bark ...

African Journals Online (AJOL)

chain [4]. P. dactylifera L. (date palm) belongs the family Arecaceae. Date fruit is the most .... Statistical analysis. All of the .... lipid peroxidation of rat brain with the IC50 value of 1.05 mg/mL ... Porter NA, Caldwell SE, and Mills KA. Mechanisms ...

Rattans of Vietnam: ecology, demography and harvesting

NARCIS (Netherlands)

Bui, My Binh

2009-01-01

Rattans are spiny climbing palms belonging to the Arecaceae family. Rattans may be single-stemmed or multi-stemmed in which stems (ramet) are clustered in a clump (genet). Rattan is an important non-timber forest product (NTFP) in almost all Southeast Asian countries. As demand for rattan products

Desiccation tolerance of embryos of Syagrus oleracea, a cerrado ...

African Journals Online (AJOL)

aghomotsegin

2015-03-18

Mar 18, 2015 ... Tissue culture was used to test the effect of different fruit drying times (0, 4, 8 and 12 days) on embryo ... confers different colours to the embryos, allowing their ..... Superior – CAPES) and the National Council for Scientific.

Assessment of an oil palm population from Nigerian Institute for Oil ...

African Journals Online (AJOL)

Oil palm (Elaeis guineensis Jacq.), a monocotyledonous plant belonging to the Arecaceae family, is one of the most important oil crops in the world. In Nigeria, oil palm has benefited immensely from conventional breeding efforts resulting in high yields that have been achieved with this breeding material. However, oil palm ...

Composición química de los aceites esenciales de las hojas de Helicteres guazumifolia (Sterculiaceae, Piper tuberculatum (Piperaceae, Scoparia dulcis (Arecaceae y Solanum subinerme (Solanaceae, recolectadas en Sucre, Venezuela

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Gabriel Ordaz

2011-06-01

Full Text Available Los aceites esenciales son biosintetizados por plantas aromáticas y pueden obtenerse de cualquier órgano de la misma, tienen gran aplicación en la industria farmacéutica, sanitaria, cosmética, agrícola y de alimentos. Los aceites esenciales de las hojas de las plantas Helicteres guazumifolia, Piper tuberculatum, Scoparia dulcis y Solanum subinerme fueron obtenidos mediante hidrodestilación con rendimientos de 0.004, 0.032, 0.016 y 0.005%, respectivamente. La CG/EM permitió identificar la mayoría de los constituyentes de estos aceites esenciales (88.00, 89.80, 87.50 y 89.47%, respectivamente, encontrándose en mayor proporción metabolitos no volátiles de estructura no terpenoidal en H. guazumifolia (30.28%, sesquiterpenoides oxigenados en P. tuberculatum (52.19%, sesquiterpenos en S. dulcis (26.09% y derivados oxigenados de diterpenos en S. subinerme (39.67%. Los constituyentes mayoritarios fueron el diisobutilftalato (13.11% en H. guazumifolia, (--espatulenol (11.37% en P. tuberculatum y el trans-fitol (8.29 y 36.00% para S. dulcis y S. subinerme, respectivamente. El diisooctilftalato fue el constituyente común en los aceites esenciales de todas las especies y los compuestos volátiles trans-pinano, L-linalool, β-ionona, isofitol, neofitadieno, trans-fitol, dibutilftalato y hexadecanoato de metilo, fueron detectados en tres de estas esencias. Esto sugiere que dichas plantas pueden requerir metabolitos secundarios similares para su interacción ecológica, posiblemente debido a factores ambientales comunes.Chemical composition of essential oils from leaves of Helicteres guazumifolia (Sterculiaceae, Piper tuberculatum (Piperaceae, Scoparia dulcis (Arecaceae and Solanum subinerme (Solanaceae from Sucre, Venezuela. Essential oils, biosynthesized and accumulated in aromatic plants, have a wide range of applications in the pharmaceutical health, cosmetics, food and agricultural industry. This study aimed to analyze the secondary

PHYTOCHEMICAL ANALYSIS, ANTIOXIDANT AND ...

African Journals Online (AJOL)

2012-12-31

Dec 31, 2012 ... Phoenyx dactylifera is a tree of the family Arecaceae (palms), subfamily Coryphoideae and order Arecales. It is widely found in Saharian oasis and considered as a dominant tree in this region. The fruit tree grows in its shade which provides us cover vegetables and foods. Author Correspondence, e-mail: ...

Vegetal fibers used in artisan fishing in the Salgado region, Pará

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Luiz Carlos Batista Lobato

2006-04-01

Full Text Available Plant-derived fibers used in small-scale fisheries of the Salgado region of Pará state, Brazil. Fiber-providing plants occupy a distinctive place in the daily life of traditional Amazonian communities, next to medicinal plants, food plants, and timber species. In the Salgado region of Pará state, Brazil, on the Atlantic coast (municipalities of Colares, Curuçá, Magalhães Barata, Maracanã, Marapanim, Salinópolis, Santarém Novo, São Caetano de Odivelas, São João de Pirabas, and Vigia plant-derived fibers are used in basketwork, ropes, construction reinforcements (in place of nails, body adornments, and clothing. For this survey, data were obtained from craft workers and fishermen in the Salgado region, in about 150 semi-structured interviews. In all, 17 plant species in eight botanical families and 17 genera are used in the preparation of fishing gear. Supports are made from the stems of Marantaceae and stipes of Arecaceae, woven elements are the aerial roots of Araceae and Cyclanthaceae and the stems of vine-like Bignoniaceae and Dilleniaceae, and roofing thatch is made from the leaves and midribs of Arecaceae. The most represented family in terms of number of species and uses was Arecaceae, with 8 species, followed by Dilleniaceae and Araceae, each with 2 species, and Bignoniaceae, Bombacaceae, Cyclanthaceae, Marantaceae, and Poaceae, each with a single utilized species. In addition, this paper provides information on these fiber-producing plants, in terms of their morphology, the origin and manipulation of plant materials by craftsmen, and the produced artifacts and their uses, as well as reporting cultural aspects of fibrous plant use in daily fishing activities in the Salgado region.

[Role of mammals on seed dispersal and predation processes of Mauritia flexuosa (Arecaceae)

Science.gov (United States)

Acevedo-Quintero, Juan Fernando; Zamora-Abrego, Joan Gastón

2016-03-01

Mammals and palms are important elements of fauna and flora in the Neotropics, and their interactions, such as fruit consumption and seed dispersal, are one of the most important ecological relationships in these ecosystems. The main objective of this study was to identify the relative importance of mammals in the dispersal and predation of Mauritia flexuosa palm fruits. We installed camera-traps in front of palm fallen seeds and clusters with fruits. A catalog of species was prepared with the recorded videos and the foraging behaviors exhibited were classified and identified. In addition, two exclusion treatments with three repetitions each were used. In the semi-open treatment, a plot was fenced with metal mesh leaving four open- ings in order to allow access only to small and medium sized mammals, while in the open treatment, the small, medium and large sized mammals had free access. In both cases, seed removal was evaluated. We recorded a total of 19 species of mammals, nine of which fed on palm fruits and the other five were seed dispersers. We reported for the first time the consumption of Mauritia flexuosa fruits by Atelocynus microtis. The species with the highest relative importance was Dasyprocta fuliginosa, which showed the highest percentage of seed dispersal (63.5%) compared to the other species. Tayassu peccary was identified as an in situ consumer, eating 45.3% of seeds without dispersing them. The number of seeds consumed in situ in the open treatment showed significant differences regarding the semi-open treatment, suggesting greater involvement of large mammals in this process. In conclusion, the fruits of M. flexuosa are an important food source for the local mammal com- munity. Additionally, the consumption of seeds under the canopy of the mother palm is proportionally greater than their dispersion. Generally, the pressure of frugivorous species over seeds may determine the reproductive strategies of plants. However, research on effective

Importance socioculturelle de Artocarpus altilis (Parkinson) Fosberg ...

African Journals Online (AJOL)

SARAH

31 mars 2014 ... conducted to evaluate the economic value of the species and to clarify the parental relationship between the two local forms of ..... arecaceae, an understory palm used for roof thatching in the Peruvian Amazon. Economic. Botany 54 (3), 267–277. Goussanou AC, Tente B, Djègo J, Agbani P, Sinsin B,. 2011.

Alternative tube caps on in vitro growth of Orbignya oleifera Burret ...

African Journals Online (AJOL)

Tuoyo Aghomotsegin

2016-10-19

Oct 19, 2016 ... oleifera Burret.: An Arecaceae native cerrado domain. Mariluza Silva LEITE, Paula Sperotto Alberto FARIA, Flávia Dionísio PEREIRA, Fabiano. Guimarães SILVA*, Aurélio Rúbio NETO and João das Graças SANTANA. Instituto Federal de Educação, Ciência e Tecnologia Goiano, Campus Rio Verde. Rod.

The late Quaternary decline and extinction of palms on oceanic Pacific islands

Science.gov (United States)

Prebble, M.; Dowe, J. L.

2008-12-01

Late Quaternary palaeoecological records of palm decline, extirpation and extinction are explored from the oceanic islands of the Pacific Ocean. Despite the severe reduction of faunal diversity coincidental with human colonisation of these previously uninhabited oceanic islands, relatively few plant extinctions have been recorded. At low taxonomic levels, recent faunal extinctions on oceanic islands are concentrated in larger bodied representatives of certain genera and families. Fossil and historic records of plant extinction show a similar trend with high representation of the palm family, Arecaceae. Late Holocene decline of palm pollen types is demonstrated from most islands where there are palaeoecological records including the Cook Islands, Fiji, French Polynesia, the Hawaiian Islands, the Juan Fernandez Islands and Rapanui. A strong correspondence between human impact and palm decline is measured from palynological proxies including increased concentrations of charcoal particles and pollen from cultivated plants and invasive weeds. Late Holocene extinctions or extirpations are recorded across all five of the Arecaceae subfamilies of the oceanic Pacific islands. These are most common for the genus Pritchardia but also many sedis fossil palm types were recorded representing groups lacking diagnostic morphological characters.

Phenolic composition, antioxidant and anti-proliferative activities of edible and medicinal plants from the Peruvian Amazon

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Jan Tauchen

Full Text Available ABSTRACT Among 23 extracts of medicinal and edible plants tested, Mauritia flexuosa L.f., Arecaceae, showed significant antioxidant ability (DPPH and ORAC = 1062.9 and 645.9 ± 51.4 µg TE/mg extract, respectively, while Annona montana Macfad., Annonaceae, demonstrated the most promising anti-proliferative effect (IC50 for Hep-G2 and HT-29 = 2.7 and 9.0 µg/ml, respectively. However, combinatory antioxidant/anti-proliferative effect was only detected in Oenocarpus bataua Mart., Arecaceae (DPPH = 903.8 and ORAC = 1024 µg TE/mg extract; IC50 for Hep-G2 and HT-29 at 102.6 and 38.8 µg/ml, respectively and Inga edulis Mart., Fabaceae (DPPH = 337.0 and ORAC = 795.7 µg TE/mg extract; IC50 for Hep-G2 and HT-29 at 36.3 and 57.9 µg/ml, respectively. Phenolic content was positively correlated with antioxidant potential, however not with anti-proliferative effect. None of these extracts possessed toxicity towards normal foetal lung cells, suggesting their possible use in development of novel plant-based agents with preventive and/or therapeutic action against oxidative stress-related diseases.

Aspectos ecológicos da comunidade de Araneae (Arthropoda, Arachnida em copas da palmeira Attalea phalerata Mart. (Arecaceae no Pantanal de Poconé, Mato Grosso, Brasil

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Leandro Dênis Battirola

2004-01-01

Full Text Available Seis palmeiras de Attalea phalerata foram amostradas durante a fase aquática (cheia no Pantanal de Mato Grosso (fevereiro/2001, utilizando-se a metodologia de nebulização de copas "canopy fogging". Este estudo objetivou avaliar a composição, distribuição espacial, guildas comportamentais, biomassa e sazonalidade da comunidade de Araneae em copas dessa palmeira que forma adensamentos monodominantes, típicos nessa região. Um total de 1326 aranhas foram coletadas em 99 m² de área amostral (13,4 + 8,2 indivíduos/m², representando 20 famílias, sendo Salticidae e Araneidae as mais abundantes. A biomassa total de 704 aranhas em três palmeiras correspondeu a 0.6172 mg de peso seco (0,0123+ 0,04 mg/m². Dez guildas comportamentais demonstraram a coexistência de diferentes espécies em um mesmo habitat. Representantes de Salticidae, Oonopidae e Ctenidae dominaram entre as caçadoras, e Araneidae e Dictynidae, dentre as tecelãs. A análise de distribuição espacial demonstrou que a maior abundância de aranhas ocorreu na região central da copa, provavelmente devido à quantidade de recursos disponíveis nesse local. A comparação desses resultados com aqueles obtidos durante o período de seca, demonstra diferenças sazonais influenciadas pelo pulso de inundação, principalmente com relação à composição das famílias amostradas entre os períodos de seca e cheia.Ecological aspects of a community of Araneae (Arthropoda, Arachnida at the canopy of the palm Attalea phalerata Mart. (Arecaceae in the Pantanal of Poconé, Mato Grosso, Brazil. Six palm trees of Attalea phalerata were sampled during the aquatic phase (high water in the Pantanal of Mato Grosso (February 2001 using canopy fogging. The objective was to evaluate the composition, spatial distribution, behavioural guilds, biomass and seasonality of the community of Araneae at the crowns of these palm trees, which form monospecific stands that are typical of this region. A total

2552-IJBCS-Article-Kokou Agbekonyi Agbodan

African Journals Online (AJOL)

hp

radicalaire des extraits des fruits de. Raphia gentiliana De Wild (Arecaceae). Int. J. Biol. Chem. Sci., 8(6): 2441-2451. DOI. : http://dx.doi.org/10.4314/ ijbcs.v8i6.7. Popovici I, Saykova I, Tylkowsky B. 2006. Evaluation de l'activité antioxydant des composés phénoliques par la réactivité avec le radical libre DPPH. Revue de.

SPARQL-enabled identifier conversion with Identifiers.org.

Science.gov (United States)

Wimalaratne, Sarala M; Bolleman, Jerven; Juty, Nick; Katayama, Toshiaki; Dumontier, Michel; Redaschi, Nicole; Le Novère, Nicolas; Hermjakob, Henning; Laibe, Camille

2015-06-01

On the semantic web, in life sciences in particular, data is often distributed via multiple resources. Each of these sources is likely to use their own International Resource Identifier for conceptually the same resource or database record. The lack of correspondence between identifiers introduces a barrier when executing federated SPARQL queries across life science data. We introduce a novel SPARQL-based service to enable on-the-fly integration of life science data. This service uses the identifier patterns defined in the Identifiers.org Registry to generate a plurality of identifier variants, which can then be used to match source identifiers with target identifiers. We demonstrate the utility of this identifier integration approach by answering queries across major producers of life science Linked Data. The SPARQL-based identifier conversion service is available without restriction at http://identifiers.org/services/sparql. © The Author 2015. Published by Oxford University Press.

SPARQL-enabled identifier conversion with Identifiers.org

Science.gov (United States)

Wimalaratne, Sarala M.; Bolleman, Jerven; Juty, Nick; Katayama, Toshiaki; Dumontier, Michel; Redaschi, Nicole; Le Novère, Nicolas; Hermjakob, Henning; Laibe, Camille

2015-01-01

Motivation: On the semantic web, in life sciences in particular, data is often distributed via multiple resources. Each of these sources is likely to use their own International Resource Identifier for conceptually the same resource or database record. The lack of correspondence between identifiers introduces a barrier when executing federated SPARQL queries across life science data. Results: We introduce a novel SPARQL-based service to enable on-the-fly integration of life science data. This service uses the identifier patterns defined in the Identifiers.org Registry to generate a plurality of identifier variants, which can then be used to match source identifiers with target identifiers. We demonstrate the utility of this identifier integration approach by answering queries across major producers of life science Linked Data. Availability and implementation: The SPARQL-based identifier conversion service is available without restriction at http://identifiers.org/services/sparql. Contact: sarala@ebi.ac.uk PMID:25638809

Useful palms (Arecaceae near Iquitos, Peruvian Amazon

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Henrik Balslev

2014-03-01

Full Text Available This paper describes the uses of 64 species of palms in 28 villages in Departamento de Loreto, Peru. There, the palms are of great use as food (Bactris gasipaes, Mauritia flexuosa, Euterpe precatoria, Oenocarpus bataua, for fiber production (Astrocaryum chambira, Aphandra natalia, for construction of houses (Euterpe precatoria, Iriartea deltoidea,Socratea exorrhiza, thatching (many species of Attalea, Lepidocaryum tenue and for many medicinal purposes (Euterpe precatoria, Oenocarpus bataua.

DNA barcode authentication of saw palmetto herbal dietary supplements.

Science.gov (United States)

Little, Damon P; Jeanson, Marc L

2013-12-17

Herbal dietary supplements made from saw palmetto (Serenoa repens; Arecaceae) fruit are commonly consumed to ameliorate benign prostate hyperplasia. A novel DNA mini-barcode assay to accurately identify [specificity = 1.00 (95% confidence interval = 0.74-1.00); sensitivity = 1.00 (95% confidence interval = 0.66-1.00); n = 31] saw palmetto dietary supplements was designed from a DNA barcode reference library created for this purpose. The mini-barcodes were used to estimate the frequency of mislabeled saw palmetto herbal dietary supplements on the market in the United States of America. Of the 37 supplements examined, amplifiable DNA could be extracted from 34 (92%). Mini-barcode analysis of these supplements demonstrated that 29 (85%) contain saw palmetto and that 2 (6%) supplements contain related species that cannot be legally sold as herbal dietary supplements in the United States of America. The identity of 3 (9%) supplements could not be conclusively determined.

Floral Sources for Stingless Bees (Tetragonula iridipennis in Nellithurai Village, Tamilnadu, India

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K. Vijayakumar

2016-10-01

Full Text Available We documented 45 plant taxa belonging to 29 families and non-floral sources utilized by Tetragonula iridipennis for pollen, nectar and resin. The foragers of T. iridipennis were also found to collect non-floral resources like fruit juice, fruits kept in the market for sales and from falling and damaged mango and jasmine fruits. The mutualistic association between T. iridipennis colonies and Hemipterans was observed and documented. According to pollen analysis, all are appeared to be multifloral honeys. The families Arecaceae and Fabaceae had a significant importance amongst the samples represented by four pollen types. Coconut, Sunflower and Banana pollen types occurred most constantly among the samples. The present palynological analysis of honey samples can provide the accurate depiction of the bee flora in Nellithurai village. The present study to help the beekeepers to know the stingless bee flora and to identify the botanical origins of honey.

Fibras vegetais utilizadas na pesca artesanal na microrregião do Salgado, Pará

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Jorge Oliveira

Full Text Available As espécies vegetais fibrosas ocupam papel de destaque no cotidiano das comunidades tradicionais amazônicas ao lado das espécies medicinais, alimentícias e madeireiras. Na microrregião do Salgado do estado do Pará - constituída pelos municípios de Colares, Curuçá, Magalhães Barata, Maracanã, Marapanim, Salinópolis, Santarém Novo, São Caetano de Odivelas, São João de Pirabas e Vigia - as fibras vegetais são usadas em cestaria, trançados, fixadoras em substituição ao prego, adornos e vestuário. Para a elaboração do presente trabalho, os dados foram obtidos entre artesãos e pescadores artesanais da microrregião do Salgado do estado do Pará, com cerca de 150 entrevistas semiestruturadas. Foram registradas 17 espécies, distribuídas em oito famílias e 17 gêneros utilizados na preparação de implementos de pesca artesanal, cujas matérias prima são provenientes de diversas partes da planta, onde as talas são da haste caulinar de Marantaceae e estipe de Arecaceae, os cipós são raízes de Araceae e Cyclanthaceae e os caules de Bignoniaceae e Dilleniaceae, enquanto que as palhas são folhas e pinas de Arecaceae. A família mais representativa com relação ao número de espécies e o fornecimento de matéria prima utilizada foi Arecaceae com 8 spp., seguida de Dilleniaceae e Araceae com 2 spp., Bignoniaceae, Bombacaceae, Cyclanthaceae, Marantaceae e Poaceae com 1 sp. cada. O trabalho visa contribuir para o conhecimento das espécies vegetais fibrosas, quanto a sua morfologia, origem e manuseio da matéria prima, os produtos confeccionados e seus usos, além do registro dos aspectos culturais da utilização de espécies vegetais fibrosas no cotidiano da atividade pesqueira artesanal daquela microrregião.

Medicinal plants used to treat TB in Ghana.

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Nguta, Joseph Mwanzia; Appiah-Opong, Regina; Nyarko, Alexander K; Yeboah-Manu, Dorothy; Addo, Phyllis G A

2015-06-01

The current study was designed to document medicinal plant species that are traditionally used to treat tuberculosis (TB) by Ghanaian communities. The medicinal plants used against TB or its signs and symptoms were selected using library and online published data searches. A guided questionnaire interview was also conducted with a botanist involved in plant collection at the Centre for Scientific Research into Plant Medicine (CSRPM) at Mampong. Data obtained were entered in Excel and summarized into means and frequencies using SPSS 12.0.1 for windows, and expressed as tables and bar graphs. A total of 15 medicinal plant species distributed between 13 genera and 13 families were documented. The following medicinal plant species were found to be used against TB in Greater Accra and Eastern parts of Ghana: Azadirachta indica A. Juss. Stem bark (Meliaceae), Hygrophila auriculata Heine, whole plant (Acanthaceae), Chenopodium ambrosioides L. leaves (Amaranthaceae), Coix lacryma-jobi L. glumes (Poaceae), Solanum torvum Sw. unripe fruits (Solanaceae), Solanum torvum Sw. leaves (Solanaceae), Bidens pilosa L. whole plant (Asteraceae), Phyllanthus fraternus G.L. Webster leaves (Phyllanthaceae), Dissotis rotundifolia (Sm.) Triana, leaves (Melastomataceae), Cymbopogon giganteus Chiov. Leaves (Poaceae), Cyperus articulatus L. roots (Cyperaceae), Allium sativum L. bulb (Amaryllidaceae), Zingiber officinale Roscoe, rhizomes (Zingiberaceae), Allium cepa L. bulbs (Amaryllidaceae), Allium cepa L. leaves (Amaryllidaceae), Aloe vera var. barbadensis aqueous extract from leaves (Xanthorrhoeaceae), Aloe vera var. barbadensis organic extract from leaves (Xanthorrhoeaceae), Cocos nucifera Linn, water (Arecaceae) and Cocos nucifera Linn. Husk (Arecaceae). The collected plant species could be a source of a new class of drugs against TB. Bioactivity guided fractionation is recommended to identify lead compounds for antimycobacterial activity. The current paper documents for the first time

Myxomycetes on carnaubeira (Copernicia prunifera (Miller H. E. Moore, Arecaceae Myxomycetes em carnaubeira (Copernicia prunifera (Miller H. E. Moore, Arecaceae

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Mitra Mobin

2000-04-01

Full Text Available Entre dezembro/1994 e setembro/1995 foram realizadas sete excursões (2 a 4 dias cada ao Parque Nacional de Sete Cidades (4º5'-4º15'S, 41º30'-41º40'W, 450m alt., em Piripiri, Piauí, visando coletar frutificações de Myxomycetes em indivíduos de Coperniciaprunifera (Miller H. E. Moore, estabelecidos em área de cerrado, na localidade Lagoa Seca. As amostras foram herborizadas e incorporadas ao herbário UFP (Universidade Federal de Pernambuco, Recife, PE, com duplicatas no herbário TEPB (Universidade Federal do Piauí, Teresina, PI. Registrou-se apreciável incidência (70% de Myxomycetes na carnaubeira, em estipe vivo e folhas mortas. Dezesseis espécies, pertencentes às Ceratiomyxaceae (Ceratiomyxa lsp., Didymiaceae (Diachea lsp., Didymium 2spp., Physaraceae (Craterium 1sp., Physarum 4spp., Trichiaceae (Arcyria 2spp. e Stemonitaceae (Comatricha 3spp., Macbrideola lsp., Stemonitis lsp. foram registradas. Ceratiomyxaceae, representada por Ceratiomyxafruticulosa (Mull. Macbr., constitui primeira referência para o Estado do Piauí.From December, 1994 to September, 1995, seven collecting trips (2-4 days each were carried out in the "Parque Nacional de Sete Cidades" (4º5'-4º15'S, 41º30"-41º40'W, 450m alt., Piripiri, Piauí State, Brazil, in order to collect Myxomycetes fruiting bodies on carnauba palm trees (Coperniciaprunifera (Miller H. E. Moore, established in a place called "Lagoa Seca" (savanna-like stunted vegetation. The samples were herborized and included in the UFP Herbarium (Universidade Federal de Pernambuco, Recife, PE and the TEPB Herbarium (Universidade Federal do Piauí, Teresina, PI. In relation to the substrate, the "carnaubeira" showed a high incidence of Myxomycetes (70% on living stipitis and dead leaves. Sixteen species belonging to Ceratiomyxaceae (Ceratiomyxa lsp., Didymiaceae (Diachea lsp., Didymium 2spp., Physaraceae (Craterium lsp., Physarum 4spp., Trichiaceae (Arcyria 2spp. and Stemonitaceae (Comatricha 3spp., Macbrideola lsp., Stemonitis lsp., were registered. Ceratiomyxaceae, represented by Ceratiomyxa fruticulosa (Mull. Macbr., is a new record for Piauí State.

Distribution of the horticultural plants in togo according to decorative parts and medical value

International Nuclear Information System (INIS)

Radji, R.; Kokou, K

2014-01-01

In Togo, more than six hundred species of horticultural plants were identified belonging to approximately 59% of Dicotyledons (49 families, 145 genera and 315 species) and 37.37% were monocotyledons. Pteridophytes and gymnosperms accounted for less than 6%. The spectrum of morphological types indicated that herbs accounted for 55%, while trees and shrubs were 15%. More than 50% of the species of this flora were exotic. The species distributions were made according to their decorative parts and their place of use. Across the country, 55 plantings were recorded and unevenly distributed in cities. Apart from their ornamental use, these plants were used for feeding, traditional and industrial cosmetics in psychotherapy, horticultural therapy and in traditional and conventional medicine preparation. In this study, 79 species from 39 families are reported as medicinal plants. The Apocynaceae and Fabaceae (6 species), the Euphorbiaceae and Liliaceae (5 species), the Arecaceae and Verbenaceae (4 species) were the best represented families. (author)

Wild Edible Plants Used by the Polish Community in Misiones, Argentina.

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Kujawska, Monika; Łuczaj, Łukasz

We studied the cultural significance of wild edible plants for Eastern European migrants who settled in rural subtropical areas of South America. In 50 interviews with Polish migrants and their descendants in northern Misiones, Argentina, we recorded the use of 41 botanical species and two mushroom taxa. Different cultural significance indices were applied and sociodemographic factors such as gender, age and origin were addressed. Out of the ten most salient species, nine were fruits ( Eugenia uniflora , Eugenia involucrata , Rollinia salicifolia , Campomanesia xanthocarpa , Syagrus romanzoffiana , Allophylus edulis , Plinia peruviana , Plinia rivularis , Eugenia pyriformis ) and only one was a green vegetable ( Hypochaeris chillensis ). None of our informants reported famine foods, recreational teas or condiments. Men mentioned more wild edible species than women due to their more extensive knowledge of the forest plants growing further from settlements.

ETHNOECOLOGY AND ETHNOBOTANY OF THE PALM CARNAUBA WAX IN BRAZILIAN SEMI-ARID

OpenAIRE

Rodrigo Ferreira de Sousa; Richeliel Albert Rodrigues Silva; Talita Geovanna Fernandes Rocha; José Augusto da Silva Santana; Fábio de Almeida Vieira

2015-01-01

The aim of this study was to investigate aspects of ethnoecological and ethnobotanical of carnauba wax (Copernicia prunifera (Miller) H. E. Moore, Arecaceae) in an extractive community of municipality of Ipanguaçu, Rio Grande do Norte state. We interviewed key informants, using the technique of inducing nonspecific, guided tour and direct observation to confirm the data. According to most residents of Pedro Ezequiel Araújo community, the area of carnauba wax in the region is natural. In the r...

Estructura floral de dos especies de Trachycarpeae (Arecaceae

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Lorena I. Guevara

2014-09-01

Full Text Available Copernicia y Washingtonia son dos de los géneros de Trachycarpeae para los cuales no ha sido propuesta una clasificación subtribal debido a la carencia de resolución en los estudios filogenéticos. La morfología y anatomía floral dentro de Coryphoideae han sido útiles para la delimitación de taxones y apoyo de relaciones. En este trabajo se presenta una descripción de la estructura morfo-anatómica de las flores de C. tectorum y W. filifera, con la finalidad de explorar caracteres reproductivos que puedan aclarar su ubicación dentro de la subfamilia y contribuir con estudios de biología floral. Se fijaron flores de especimenes cultivados de ambos taxones y frutos en desarrollo de C. tectorum, se realizaron disecciones para las descripciones morfológicas y cortes anatómicos seriados para la obtención de láminas permanentes utilizando técnicas convencionales con parafina. Todos los procedimientos fueron llevados a cabo en el Laboratorio de Morfo-Anatomía, Facultad de Agronomía de la Universidad Central de Venezuela (UCV. Ambas especies tienen flores hermafroditas. Las flores de C. tectorum tienen perianto engrosado y pubescente. Las flores de W. filifera presentan un cáliz irregularmente dentado y corola corto-acuminada. Se reportan células con drusas en el tubo estaminal de C. tectorum. Uno solo de los carpelos de C. tectorum se desarrolla en fruto y se encontró una capa de células con rafidios que podrían formar el endocarpo crustáceo en los frutos maduros. W. filifera presenta pocas capas de células de paredes engrosadas y tejido esclerenquimático en el mesofilo del perianto, gineceo con carpelos fusionados en el ápice del ovario (en su porción ventral, libres en la base y en el ápice del estilo, donde presenta suturas ventrales abiertas. Los pétalos de C. tectorum poseen una hipodermis ventral de células con paredes muy engrosadas, gineceo con carpelos fusionados en el ápice del ovario, libres y adpresos en su base, región estilar-estigmática fusionada y canal de transmisión estilar ausente distalmente. La presencia de canales estilares separados en C. tectorum, unidos distalmente en W. filifera confirman la relación cercana de estas especies con la subtribu Livistoninae. Igualmente, se encontraron algunas similitudes entre C. tectorum y Pritchardia (p.e. base carnosa del cáliz y epidermis ventral con células de paredes engrosadas en los pétalos, apoyando ciertas afinidades entre ambos géneros.

[Floral structure of two species of Trachycarpea (Arecaceae)].

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Guevara, Lorena I; Jáuregui, Damelis J; Stauffer, Fred W

2014-09-01

Copernicia and Washingtonia are two genera of the Trachycarpeae for which no subtribal classification has been proposed, mainly because of the lack of resolution in phylogenetic studies. Morphology and anatomy of flowers whithin Coryphoideae have proven useful for taxa delimitation and supporting relationships among their members. A description of the morphological and anatomical structure of flowers of C. tectorum and W. filifera is presented in order to explore reproductive characters that may clarify their classification within the subfamily and to contribute with floral biology studies. Flowers of cultivated specimens of both taxa and developing fruits of C. tectorum were fixed in FAA, dissected for morphological analysis, and parafin-embedded flowers and fruits were serially sectioned for obtaining permanent slides, using conventional techniques and safranin-fast green staining. All procedures were carried out in the Laboratory of Morpho-Anatomy, Agronomy Faculty of the Universidad Central de Venezuela (UCV). Both species have hermaphroditic flowers. C. tectorum flowers have a thick and pubescent perianth, six stamens with filaments forming a tube fused to the corolla, with rounded projections and an acute apex where the anthers are inserted. W. filifera flowers have an irregularly dentate calyx, and a shortly acuminate corolla, six stamens united by their filaments to the corolla which at the same time are briefly fused to the gynoecium. Cells with druse crystals in the staminal tube are reported for C. tectorum. Only one of the carpels of the gynoecium of C. tectorum develops at fruit stage, and a layer of abundant raphide cells forming a crustaceous endocarp in mature fruits, was found. W. filifera presents the perianth mesophyll with few layers of thick walled cells and schlerenchymatic tissue, gynoecium with apically fused carpels in the ventral region of ovary, free at the base and the apex of the style, where the ventral sutures are opened. C. tectorum has a ventral hypodermis in the petals made of large and thick walled cells, gynoecium with apically fused carpels in the ovary, free and adpressed basally, style-stigma completely fused, and stylar transmission channel absent distally. Distinct stylar canals in C. tectorum, united distally in W. filifera confirm the close relationship between these species and subtribe Livistoninae. Also, some floral morpho-anatomical similarities (e.g. fleshy calyx base and a hypodermis with thickened cell walls in petals) were found between C. tectorum and Pritchardia, supporting the affinities between both genera.

Caracterización florística de ambientes de la cuenca baja del Río Cucurital, afluente del Río Caroní, Estado Bolívar, Guayana Venezolana Floristic charaterization of enviroments of the lower Cucurital river basin, affluent of Caroní river, Bolívar State, Venezuelan Guayana

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Leyda Rodríguez

2009-03-01

Full Text Available Como una contribución al conocimiento florístico de la cuenca del Río Caroní se realizaron colecciones botánicas en varios ambientes de la cuenca baja del Río Cucurital, que incluyen formaciones boscosas, tanto en penillanura como ribereñas, morichales, sabanas, arbustales y ambientes perturbados; en los bosques se hicieron colecciones en parcelas de 0,1 ha y fuera de ellas. De manera general, las familias con mayor cantidad de especies fueron Melastomataceae (46, Rubiaceae (33, Euphorbiaceae (23, Cyperaceae (19, Myrtaceae (18, Fabaceae (18, Clusiaceae (15, Arecaceae (15, Caesalpiniaceae (14, Chrysobalanaceae (14, Lauraceae (14, Poaceae (13 y Burseraceae (12, siendo las más representativas de la cuenca baja. Los géneros con mayor cantidad de especies fueron Miconia (17, Psychotria (13, Ocotea (10, Myrcia (8, Protium (7, Licania (7 y Rhynchospora (7. Melastomataceae y Rubiaceae predominaron en todos los ambientes con excepción de la sabana; Lauraceae, Burseraceae, Arecaceae, Chrysobalanaceae y Euphorbiaceae fueron las de mayor importancia en los bosques, y Myrtaceae y Cyperaceae en los bosques ribereños, esta última junto con las Poaceae predominaron en morichal y sabana. Se encontraron 19 especies restringidas a la Guayana venezolana, de las cuales 12 se conocen sólo del estado Bolívar, evidenciando que las condiciones ecológicas, topográficas y edáficas determinan la presencia de elementos florísticos particulares. Las actividades humanas son escasas, lo que se ha reflejado en poca alteración de las comunidades vegetales y en el mantenimiento del carácter prístino de los ambientes. Los escasos ambientes intervenidos han sido colonizados por especies herbáceas y arbustivas típicas de la región.As a contribution to the floristic knowledge of the Caroní river basin, botanical collections were made in several environments of the lower Cucurital river basin, including forests, riverine forests, palm swamp forests (morichal

Morfologia da plântula em desenvolvimento de Astrocaryum aculeatum Meyer (Arecaceae Morphology of Astrocaryum aculeatum Meyer (Arecaceae seedlings in development

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Daniel Felipe de Oliveira Gentil

2005-09-01

Full Text Available Astrocaryum aculeatum (tucumã é uma palmeira amazônica, cuja polpa dos frutos, rica em vitamina A, pode ser consumida ao natural ou na forma de sorvete, suco, licor e doce. Sua propagação é demorada, existindo pouco conhecimento sobre a germinação das sementes e o desenvolvimento das plântulas. O presente trabalho teve como objetivo descrever o processo germinativo das sementes dessa espécie, submetidas ou não ao pré-tratamento de embebição, e caracterizar cronologicamente os estádios morfológicos da plântula. A germinação das sementes é do tipo adjacente ligulada, criptocotiledonar e hipógea. O tempo para alcançar cada estádio foi menor para as sementes embebidas, indicando efeito benéfico da embebição sobre a velocidade do processo germinativo, com média de emergência do pecíolo cotiledonar de 99 dias e de completa expansão da primeira folha bífida de 253 dias.Astrocaryum aculeatum (tucumã is an Amazonian palm tree, whose fruit pulp is rich in vitamin A and can be consumed fresh or in ice creams, juices, liqueurs and sweets. Its propagation is slow and little knowledge exists about the seed germination and seedling development. This study describes and characterizes the morphological stages of seedling development, during the germination of seeds, pre-treatmented or not with soaking in water. The germination of seeds is of the adjacent ligular, cryptocotylar and hypogeal type. The time to each stage was shorter for the soaked seeds, indicating a beneficial effect on the speed of the germination process, with mean time of emergence of the cotyledonal petiole being 99 days and complete expansion of the first leaf bifid by 253 days.

Dieta de Micoureus demerarae (Thomas (Mammalia, Didelphidae associada às florestas contíguas de mangue e terra firme em Bragança, Pará, Brasil Diet of Micoreus demerarae (Thomas (Mammalia, Didelphidae associated with contiguous forests of mangrove and terra firme in Bragança, Pará, Brazil

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Marcus E. B. Fernandes

2006-12-01

Full Text Available A dieta de Micoureus demerarae (Thomas, 1905 foi estudada em bosques de mangue e terra firme através de amostras estomacais e fecais. O número de indivíduos capturados foi inversamente proporcional à disponibilidade de frutos e insetos, sendo Coleoptera e Hemiptera as ordens de artrópodes mais consumidos e Passifloraceae e Arecaceae os frutos mais ingeridos. Desse modo, tanto a maior variabilidade de frutos como a alta produção destes durante a estação seca, parecem explicar o aumento da captura desses animais nos bosques de terra firme, dos quais são originalmente provenientes. Os itens alimentares sugerem que esta espécie possui uma dieta do tipo onívora, independentemente da sazonalidade ou distribuição dos recursos disponíveis.The diet of Micoureus demerarae (Thomas, 1905 was studied in mangrove and terra firme stands by using stomachal and faecal samples. The number of captured individuals was inversely proportional to availability of fruits and insects, being Coleoptera and Hemiptera the most consumed arthropod orders and Passifloraceae and Arecaceae the most ingested fruits. Thus, either fruits variability or their high yield during the dry season seem to explain the increase of captured animals in the terra firme stands, where they originally come from. The food items suggest that this species has an omnivorous diet, independently of the seasonality or distribution of available resources.

Floristic Diversity of Two Zones of Humid Tropical Forest at Alto Baudó, Chocó, Colombia

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Luis Javier Mosquera Ramos

2007-08-01

Full Text Available Between June and August of 2005 the floristic composition ≥1 cm of DAP was determined in an area of ? 0.2 ha of humid tropical forest at the localities of Pie de >Pató (05º 30' 56" N and 76º 58' 26" W and Nauca (5º 41' 6" N and 77º 00' 36" W, Alto Baudó, Chocó Colombia . En each locality an area of 0.1 ha was sampled which was divided into smaller areas of 2 x 50 cm each. A total of 1618 inidivduals were recorded represented by 257 species, 156 genres and 56 botanical families from which 842 individuals, 161 species, 108 genres and 46 families where found at Pie de Pató, and 776 individuals, 161 species, 98 genres and 45 families at Nauca. At Pie de Pató the families best represented in terms of genres were Rubiaceae (12 genres and 27 species, Arecaceae (eight genres and eight species and Bombacaceae (seven genres and ten species. At Nauca they were Rubiaceae (eleven genres and 25 species, Moraceae (eight genera and 13 species and Arecaceae (eigth genres and eight species. The richness index was of 23,75 and 24,05 for Pie de Pató and Nauca respectively. Diversity change was stimated as 4,43 for both localities. These results indicate high diversity of these forests at Alto Baudó.

Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon echinulatum (Arecaceae)

DEFF Research Database (Denmark)

Trénel, P.; Hansen, Michael Møller; Nordmand, S.

2008-01-01

-Huancabamba zone (AHZ) of southern Ecuador/northern Peru, as indicated by observations on fruit morphology. Second, we assessed the timeframe of cross-Andean divergence, and third, we investigated the impact of contemporary and historical landscape features on observed spatio-genetic patterns. Individual-based...... Bayesian clustering (BC) identified a northeastern, southeastern, southwestern, and northwestern cluster, with areas of genetic discontinuity coinciding with the Andes and the Giron-Paute deflection. F-statistics derived from BC suggested an east-to-west dispersal history. Population-based analyses...... impact of climatic friction. Coalescent analysis revealed that cross-Andean divergence took place during the Quaternary. Significant historical isolation (RST > FST) was found in the southwestern population. The current study illustrates a joint effect of founder dynamics, divergence by distance...

Geospatial patterns in traditional knowledge serve in assessing intellectual property rights and benefit-sharing in northwest South America

DEFF Research Database (Denmark)

Cámara-Leret, Rodrigo; Paniagua-Zambrana, Narel; Svenning, J.-C.

2014-01-01

medicinal palm (Arecaceae) uses is unique and how much is shared across (i) four countries (Colombia, Ecuador, Peru, Bolivia), (ii) two cultural groups (Amerindian and non-Amerindian), (iii) 52 Amerindian tribes, (iv) six non-Amerindian groups, (v) 41 communities, and (vi) individuals in the 41 communities...... in the number of unshared and shared uses accounted for by the five birth cohorts. Results We found that most knowledge was not shared among countries, cultural groups, tribes, communities, or even individuals within them. Still, a minor knowledge component was widely shared, even across countries. General...

A dated phylogeny complements macroecological analysis to explain the diversity patterns in Geonoma (Arecaceae)

DEFF Research Database (Denmark)

Roncal, Julissa; Overgaard, Anne Blach; Borchsenius, Finn

2011-01-01

pattern. To test for a time-for-diversification effect, we correlated four different species richness measures with the diversification time of the earliest large lineage that is characteristic of each cluster. In support of this hypothesis, we found that geographic areas with higher richness contained...... coherent floristic clusters. We then evaluated the extent to which the spatial variation in species composition reflects present-day environmental variation vs. nonenvironmental spatial effects, as expected if the pattern reflects historical biogeography. We also examined the degree of geographic structure...... in the Geonoma phylogeny. Finally, we used a dated phylogeny to assess whether species richness within the floristic clusters was constrained by a specific historical biogeographic driver, namely time-for-diversification. A cluster analysis identified six spatially coherent floristic clusters, four of which were...

Association of the "IUCN vulnerable "spiny rat Clyomys bishopi (Rodentia:Echimyidaewith palm trees and armadillo burrows in southeastern Brazil

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Adriana A Bueno

2004-12-01

Full Text Available The globally vulnerable Clyomys bishopi ,a semi-fossorial and colonial rodent,is apparently limited to cerrado (savannah-like vegetationphysiognomies in São Paulo State,Brazil.The aim of the study was to verify whether the presence of C.bishopi is associated to the occurrence of palm trees (Attalea gearensis, Syagrus loefgrenii and armadillo burrows.Thirty six quadrats were placed in different physiognomies of cerrado vegetation at Itirapina Ecological Station,southeastern Brazil to survey the number of C.bishopi burrows of individuals of palm trees and burrows of armadillos.There was a strong dependence and association between the number of C.bishopi burrows and all measured variables (Contingency tables and Spearman rank correlations.It is suggested that this rodent can be found in great numbers where palm trees are abundant.The use of armadillo burrows possibly makes the movement of the rodents easier inside their own galleries.Rev.Biol. Trop. 52(4:1009-1011.Epub 2005 Jun 24.El roedor colonial Clyomys bishopi está aparentemente limitado a vegetación de semi-sabana (cerradoen el estado de São Paulo,Brasil.El objetivo de este estudio fue verificar si la presencia de C.bishopi está asociada a la individuos de las palmeras Attalea gearensis,Syagrus loefgrenii y madrigueras de armadillos.El estudio fue realizado en la Estación Ecológica de Itirapina,en el sureste de Brasil.Treinta y seis cuadrantes fueron dispuestos en diferentes fisionomías del la vegetación del cerrado para encuestar el número de madrigueras de C.bishopi, árboles individuales de palma y madrigueras de armadillos.Se calcularon tablas de contingencia y correlaciones de Sperman para evaluar, respectivamente, la dependencia y asociación entre el número de madrigueras de C.bishopi y las otras variables.Se encontró una fuerte dependencia y asociación entre el número de madrigueras de C.bishopi y todas las variables medidas.Esto sugiere que este roedor alcanza grandes

Caracterização química do palmito guariroba in natura e congelado Chemical characterization of fresh and frozen guariroba palm

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Priscila Aiko Hiane

2011-06-01

Full Text Available No Brasil, diversos tipos de palmeiras nativas podem fornecer palmito de boa qualidade, dentre elas destaca-se a guarirobeira (Syagrus oleracea (Mart. J. Becc., pelo palmito de sabor diferenciado e grande aceitação na região do Cerrado. O objetivo do presente trabalho foi determinar as características do palmito de guariroba, quanto à umidade, resíduo mineral fixo, lipídios totais, proteínas, glicídios redutores e não-redutores, fibras totais, valor calórico, ácido ascórbico, compostos fenólicos, pH e minerais (potássio, fósforo, cálcio, sódio e ferro, verificando o efeito do processamento (branqueamento, acidificação e congelamento no produto a ser comercializado congelado. Os valores médios diferiram significativamente (PIn Brazil many kinds of native palms can provide hearth palm of good quality and among them stands out the guarirobeira (Syagrus oleracea (Mart. J. Becc., which has different flavor and great acceptance in the Cerrado region. The objective of this research was to determine the characteristics of guariroba palm heart, with relationship to the moisture, ash, total lipids, proteins, reducer and no-reducer sugars, acidity, ascorbic acid, total phenol, pH, total fiber and iron, phosphorus, calcium, sodium and potassium minerals. It was also verified the effect of processing (blanching, acidification and freezing in the frozen product. Significant differences (P<0.05 was noted among average values found in frozen and raw samples, with contents (g 100g-1 respectively, for moisture, of 87.68 and 90.56; ash, 0.96 and 0.73; and lipids, 0.44 and 0.24; besides the occurrence of decreasing energy value from 11.64 to 9.97kcal 100g-1 in the integral sample. The citric acid use in the processing of guariroba palm heart decreased the pH of 5.8 to 4.5, and was efficient for avoid browning. The guariroba palm heart still be a good source of e fiber and total phenol after freezing, in addition to offer high contents of

Levels of licury oil [“Syagrus coronata” (Martius Beccari] in crossbred Boer kids diet Níveis de óleo de licuri ["Syagrus coronata" (Martius Beccari] na dieta de cabritos ¾ Boer

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Felicidade Margarida Macome

2010-12-01

Full Text Available The aim of this study was to determine the best level of licury oil in the diet, feed intake, digestibility, blood parameters and performance of ¾ Boer goats. 20 male goats were used, with an initial weight of 10.8kg/LW. The animals were fed with hay and concentrated mix supplemented with licury oil. The experiment lasted 70 days. Feed and feces samples were collected for determination of feed intake and digestibility. The intake of dry matter, ether extract, non fiber carbohydrates and total digestible nutrient presented quadratic effect with the addition of the oil. The plasma parameters were not affected with oil inclusion as well the intake of fiber fractions. Dry matter and crude protein digestibility were increased with the oil inclusion, although ether extract digestibility presented quadratic effect. The average daily gain and feed conversion of dry matter and ether extract showed a quadratic effect of adding oil. Based on performance and nutrient intake using this oil is not advantageous for feeding growing goats. However based on the other parameters, licury oil can be used up to 4.5% of the diet.Objetivou-se determinar o melhor nível de óleo de licuri na dieta de caprinos por intermédio do desempenho, consumo, digestibilidade, e parâmetros sanguíneos. Vinte cabritos, foram alimentados com proporções iguais de volumoso e concentrado e 0; 1,5; 3,0 e 4,5% de óleo de licuri (esses níveis consistiram nos tratamentos. O experimento durou 70 dias. Os animais foram pesados no inicio e no fim do experimento. Foram coletadas amostras do alimento, sobras, e das fezes, para determinação do consumo e digestibilidade. O consumo de matéria seca, extrato etéreo, carboidratos não-fibrosos e nutrientes digestíveis totais, tiveram efeito quadrático com a adição do óleo. Os parâmetros sanguíneos não foram influenciados pelos tratamentos, bem como o consumo das frações fibrosas. Os coeficientes de digestibilidade da matéria seca e proteína bruta aumentaram com inclusão do óleo, enquanto que o coeficiente de digestibilidade do extrato etéreo apresentou comportamento quadrático. O ganho médio diário e as conversões alimentares da matéria seca e extrato etéreo sofreram efeito quadrático da adição do óleo. Com base no desempenho e consumo de nutrientes o uso do óleo de licuri não é vantajoso na alimentação de caprinos em crescimento. Entretanto com base nos outros parâmetros estudados, esse óleo pode ser utilizado até 4,5% da dieta.

Co-occurrence and community assembly in Amazonian palms (Arecaceae)

DEFF Research Database (Denmark)

Eiserhardt, Wolf L.; Balslev, Henrik; Kristiansen, Thea

where palms abound in all major habitats. Using a dataset including >340,000 palm individuals in 430 transects, we analysed species richness, compositional turnover, and phylogenetic structure of palm assemblages in this region. We found a strong relationship of alpha-diversity and species turnover...... to habitat, indicating niche assembly. Habitat associations were phylogenetically non- random, leading to, e.g., co-existence of close relatives on flood plains. Dispersal and biogeographic history had a clear effect on alpha diversity, gamma diversity, and species turnover, and to a lesser degree...

Thoughts on identifiers

CERN Multimedia

CERN. Geneva

2005-01-01

As business processes and information transactions have become an inextricably intertwined with the Web, the importance of assignment, registration, discovery, and maintenance of identifiers has increased. In spite of this, integrated frameworks for managing identifiers have been slow to emerge. Instead, identification systems arise (quite naturally) from immediate business needs without consideration for how they fit into larger information architectures. In addition, many legacy identifier systems further complicate the landscape, making it difficult for content managers to select and deploy identifier systems that meet both the business case and long term information management objectives. This presentation will outline a model for evaluating identifier applications and the functional requirements of the systems necessary to support them. The model is based on a layered analysis of the characteristics of identifier systems, including: * Functional characteristics * Technology * Policy * Business * Social T...

Allometria da palmeira babaçu em um agroecossistema de derruba-e-queima na periferia este da Amazônia

OpenAIRE

Gehring,Christoph; Zelarayán,Marcelo Luís C.; Almeida,Rosângela B.; Moraes,Flávio Henrique R.

2011-01-01

A palmeira babaçu (Attalea speciosa C.Martius, Arecaceae) tem grande importância socioeconômica e ecológica em grande parte da área tropical brasileira, especialmente em áreas degradadas por queimadas freqüentes na Amazônia. No entanto, ainda pouco se sabe sobre as características ecológicas desta espécie-chave. Este estudo investiga a alometria do babaçu com o objetivo de estabelecer uma metodologia eficiente na estimativa da biomassa aérea de palmeiras juvenis e adultas e para um melhor ent...

In Silico Mining of Microsatellites in Coding Sequences of the Date Palm (Arecaceae Genome, Characterization, and Transferability

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Frédérique Aberlenc-Bertossi

2014-01-01

Full Text Available Premise of the study: To complement existing sets of primarily dinucleotide microsatellite loci from noncoding sequences of date palm, we developed primers for tri- and hexanucleotide microsatellite loci identified within genes. Due to their conserved genomic locations, the primers should be useful in other palm taxa, and their utility was tested in seven other Phoenix species and in Chamaerops, Livistona, and Hyphaene. Methods and Results: Tandem repeat motifs of 3–6 bp were searched using a simple sequence repeat (SSR–pipeline package in coding portions of the date palm draft genome sequence. Fifteen loci produced highly consistent amplification, intraspecific polymorphisms, and stepwise mutation patterns. Conclusions: These microsatellite loci showed sufficient levels of variability and transferability to make them useful for population genetic, selection signature, and interspecific gene flow studies in Phoenix and other Coryphoideae genera.

Effect of replacing ground corn and soybean meal with licuri cake on the performance, digestibility, nitrogen metabolism and ingestive behavior in lactating dairy cows.

Science.gov (United States)

Ferreira, A C; Vieira, J F; Barbosa, A M; Silva, T M; Bezerra, L R; Nascimento, N G; de Freitas, J E; Jaeger, S M P L; Oliveira, P de A; Oliveira, R L

2017-11-01

Licuri (Syagrus coronate) cake is a biodiesel by-product used in ruminant feed as a beneficial energy source for supplementation in managed pastures. The objective was to evaluate the performance, digestibility, nitrogen balance, blood metabolites, ingestive behavior and diet profitability of eight crossbred Holstein (3/4)×Gyr (5/8) multiparous cows (480±25 kg BW and 100 days milking) grazing and supplemented with licuri cake partially replacing ground corn and soybean meal in concentrate (0, 200, 400 and 600 g/kg in dry matter (DM)), distributed in an experimental duplicated 4×4 Latin square design. Licuri cake partially replacing ground corn and soybean meal increased (Pdairy cows with average productions of 10 kg/day at levels up to 400 g/kg in the concentrate supplement because it provides an additional profit of US$0.07/animal per day and increased milk and Minas frescal cheese fat without negative effects on productive parameters.

Durabilidade natural do estipe de pupunha (Bactris gasipaes Kunth, Arecaceae II: insetos Natural durability of Bactris gasipaes Kunth (peach palm, Arecaceae stipe II: insects

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Raimunda Liege Souza de Abreu

2004-09-01

Full Text Available Neste trabalho estão apresentados os resultados da durabilidade natural do estipe (madeira de Bactris gasipaes Kunth (pupunha, quando submetido ao ataque de insetos xilófagos, em ensaios em ambiente florestal e urbano. Foram utilizados dez palmeiras, cinco com espinhos e cinco sem espinhos, de plantios da Fazenda Experimental da Universidade Federal do Amazonas, localizada no km 40 da rodovia Manaus-Boa Vista (BR 174. De cada uma das palmeiras foram cortados três discos de aproximadamente 30 cm de espessura, retirados da base, do meio e do topo. No ambiente florestal, os discos foram distribuídos aleatoriamente, em área próxima ao plantio, no espaçamento de 0,5m, permanecendo durante 18 meses, período no qual foram efetuadas seis inspeções trimestrais para avaliar o grau de deterioração e coleta de insetos. Para o ensaio em condição urbana, os discos foram secionados axialmente para a retirada da medula e distribuídos aleatoriamente, nas posições côncava e convexa, sobre uma estrutura de madeira, localizada no Campus do INPA em Manaus, e inspecionados bimestralmente por um ano. Os resultados do ensaio no ambiente florestal indicaram que a maioria dos discos foi deteriorada por térmitas e a vida útil da base foi em torno de 18 meses, a do meio e do topo em torno de 15. As principais espécies de cupins foram: Heterotermes tenuis (Hagen (Rhinotermitidae responsável pela deterioração da parte basal, mediana e o topo; Nasutitermes similis Emerson (Termitidae que infestou a região da base e do meio; Anoplotermes sp.(Termitidae e Nasutitermes tatarandae (Holmgren (Termitidae responsáveis pela infestação da parte mediana do estipe. No ambiente urbano, o principal responsável pela deterioração das amostras foi o besouro Dinoderus bifoveolatus Wollston (Bostrichidae, e em seguida, o térmita N. similis.The durability of the stipe of Bactris gasipaes Kunth (Peach palm when under attack by xylophage insects, is evaluated in the present paper, through forest and urban environment field tests. Five palms with spines and five without spines from the Tabatinga population (Putumayo landrace were used in the experiment. Disks approximately 30 cm thick were taken from the butt, middle and top portions of each palm and distributed at random in a forest area near the INPA Peach Palm Germoplasm Bane (2º38'S 60º03'W. The time of permanence of the samples was 18 months, and in this period the disks were checked every three months to evaluate the degree of deterioration and collection of insects. In the urban condition, the same procedure was adopted, however each disk was halved to remove the centre and each half was distributed at random, one in a concave and the other in a convex position, on a wooden framework situated in the INPA's campus, Manaus, and checked bimonthly for one year. The results in the forest condition indicated that most of the disks were deteriorated by termites, and useful life of the butt portions varied around 18 months, the middle and the top around 15. The main species of termites were: Heterotermes tenuis (Hagen (Rhinotermitidae attacked the butt, middle and the top parts; Nasutitermes similis Emerson (Termitidae that infested the area of the base and of the middle; Anoplotermes sp. (Termitidae and Nasutitermes tatarandae (Holmgren (Termitidae attacked the medium part of the stipe. In the urban condition, the beetle Dinoderus bifoveolatus Wollston (Bostrichidae, was the most responsible for the deterioration of the samples, followed by the termite N. similis.

[Micromorphology of pejibaye leaflets Bactris gasipaes (Arecaceae) var. diamonds-10].

Science.gov (United States)

Sánchez-Chacón, Ethel; Alvarado-Rodríguez, Olman; Rodríguez-Arrieta, Alexander; Gómez-Alpízar, Luis

2016-09-01

Bactris gasipaes is widely cultivated for the consumption of palm hearts and fruits. The present work describes the micro morphological characteristics of leaflets from adult plants of B. gasipaes, thornless variety Diamantes-10, collected in the Diamantes Experimental Station in Guápiles, Costa Rica. We collected 25 leaflets and analyses were performed with a combination of microscopy techniques: light microscopy, scanning electron microscopy and transmission electron microscopy to study their structure. Our results showed that leaflets have abundant epicuticular wax on adaxial and abaxial surfaces. Analyses from the epidermis indicated that it is composed of isodiametric cells, and it is also evident that hypodermis cells have rectangular shape and are larger than the other epidermal cells. We observed stomata on both surfaces, but they were more abundant in the abaxial surface. On the other hand, the epidermis showed the presence of trichomes with three different morphologies. In the parenchyma, cells are large and not well defined, and we observed the presence of astroesclereids, and compact groups of fiber bundles between parenchyma cells. The central vein has several vascular bundles, arranged in a continuous manner, and they are surrounded by sclerotic tissue; some of these fibers presented live protoplasts. All minor veins showed the same anatomy as the central vein. In these veins, the vessel elements of protoxylem and metaxylem showed scalariform ornaments on their walls. Phloem is located towards the adaxial surface of the vein and we observed sieve and companion cells surrounded by fibers and parenchyma cells. The companion cells presented branched plasmodesmata attached to a sieve element, and in these elements we found protein bodies called P-protein. The main anatomical difference in the leaflets of the var. Diamantes-10, compared to the other varieties of B. gasipaes K, is the lack of thorns; the other morphological features seem to be conserved.

[Leaf micrografic anatomy of the Neotropical palm Bactris gasipaes (Arecaceae)].

Science.gov (United States)

Chaimsohn, Francisco Paulo; Montiel, Mayra; Villalobos, Enrique; Mora Urpi, Jorge

2008-06-01

The economic importance of the palm Bactris gasipaes is growing in the Neotropoical region. We collected leaflets from plants under a chemical fertilization regime and a population of 5000 plants per hectare, in Costa Rica. The variety, Diamantes 10, has an ascendency fom the upper Amazon basin. We used Harries hematoxiline, eocine and standard light microscopy techniques. The presence of raphids and buliform cells was confirmed for the abaxial surface of the leaflets and for the hypodermic tissue on both sides. The absence of the Krantz anatomy was confirmed in consistence with former observations about the C3 photosynthesis in other species of Palmaceae. The average stomatal density on the abaxial surface was 96.87 +/- 16.31 stomata.mm(-2) and 14.20 +/- 4.05 in the adaxial surface.

Floral structure in the neotropical palm genus Chamaedorea (Arecoideae, Arecaceae

Directory of Open Access Journals (Sweden)

Stauffer, Fred W.

2008-12-01

Full Text Available Male and female floral structure has been studied in 28 species of Chamaedorea, the largest palm genus present in the Neotropics. The taxa investigated represent all subgenera according to the most recent taxonomic revision of the group. Morphological, histological and cytological features that are known to be of importance for interactions with visiting insects were studied and their putative role in protecting the flowering parts assessed. The taxonomic distribution of selected characters is in some cases congruent with relationships inferred by recently published molecular studies within the group.Se ha estudiado la estructura de las flores masculinas y femeninas en 28 especies de Chamaedorea, el género de palmas con mayor número de especies en la región neotropical. Los táxones investigados representan a todos los subgéneros contemplados en la más reciente revisión taxonómica del grupo. Se han estudiado los caracteres morfológicos, histológicos y citológicos de mayor importancia en cuanto a la visita de insectos y se ha examinado su rol dentro de la protección de los órganos florales. La distribución taxonómica de caracteres seleccionados ha demostrado, en algunos casos, ser congruente con las relaciones inferidas por los más recientes estudios moleculares que incluyen al grupo.

Identifiability in stochastic models

CERN Document Server

1992-01-01

The problem of identifiability is basic to all statistical methods and data analysis, occurring in such diverse areas as Reliability Theory, Survival Analysis, and Econometrics, where stochastic modeling is widely used. Mathematics dealing with identifiability per se is closely related to the so-called branch of ""characterization problems"" in Probability Theory. This book brings together relevant material on identifiability as it occurs in these diverse fields.

Identifying Knowledge and Communication

Directory of Open Access Journals (Sweden)

Eduardo Coutinho Lourenço de Lima

2006-12-01

Full Text Available In this paper, I discuss how the principle of identifying knowledge which Strawson advances in ‘Singular Terms and Predication’ (1961, and in ‘Identifying Reference and Truth-Values’ (1964 turns out to constrain communication. The principle states that a speaker’s use of a referring expression should invoke identifying knowledge on the part of the hearer, if the hearer is to understand what the speaker is saying, and also that, in so referring, speakers are attentive to hearers’ epistemic states. In contrasting it with Russell’s Principle (Evans 1982, as well as with the principle of identifying descriptions (Donnellan 1970, I try to show that the principle of identifying knowledge, ultimately a condition for understanding, makes sense only in a situation of conversation. This allows me to conclude that the cooperative feature of communication (Grice 1975 and reference (Clark andWilkes-Gibbs 1986 holds also at the understanding level. Finally, I discuss where Strawson’s views seem to be unsatisfactory, and suggest how they might be improved.

De-identifying an EHR Database

DEFF Research Database (Denmark)

Lauesen, Søren; Pantazos, Kostas; Lippert, Søren

2011-01-01

-identified a Danish EHR database with 437,164 patients. The goal was to generate a version with real medical records, but related to artificial persons. We developed a de-identification algorithm that uses lists of named entities, simple language analysis, and special rules. Our algorithm consists of 3 steps: collect...... lists of identifiers from the database and external resources, define a replacement for each identifier, and replace identifiers in structured data and free text. Some patient records could not be safely de-identified, so the de-identified database has 323,122 patient records with an acceptable degree...... of anonymity, readability and correctness (F-measure of 95%). The algorithm has to be adjusted for each culture, language and database....

Transcriptome sequencing and de novo assembly in arecanut, Areca catechu L elucidates the secondary metabolite pathway genes

Directory of Open Access Journals (Sweden)

Ramaswamy Manimekalai

2018-03-01

Full Text Available Areca catechu L. belongs to the Arecaceae family which comprises many economically important palms. The palm is a source of alkaloids and carotenoids. The lack of ample genetic information in public databases has been a constraint for the genetic improvement of arecanut. To gain molecular insight into the palm, high throughput RNA sequencing and de novo assembly of arecanut leaf transcriptome was undertaken in the present study. A total 56,321,907 paired end reads of 101 bp length consisting of 11.343 Gb nucleotides were generated. De novo assembly resulted in 48,783 good quality transcripts, of which 67% of transcripts could be annotated against NCBI non – redundant database. The Gene Ontology (GO analysis with UniProt database identified 9222 biological process, 11268 molecular function and 7574 cellular components GO terms. Large scale expression profiling through Fragments per Kilobase per Million mapped reads (FPKM showed major genes involved in different metabolic pathways of the plant. Metabolic pathway analysis of the assembled transcripts identified 124 plant related pathways. The transcripts related to carotenoid and alkaloid biosynthetic pathways had more number of reads and FPKM values suggesting higher expression of these genes. The arecanut transcript sequences generated in the study showed high similarity with coconut, oil palm and date palm sequences retrieved from public domains. We also identified 6853 genic SSR regions in the arecanut. The possible primers were designed for SSR detection and this would simplify the future efforts in genetic characterization of arecanut.

Floral preferences and climate influence in nectar and pollen foraging by Melipona rufiventris Lepeletier (Hymenoptera: Meliponini) in Ubatuba, São Paulo state, Brazil.

Science.gov (United States)

Fidalgo, Adriana de O; Kleinert, Astrid de M P

2010-01-01

We describe the environment effects on the amount and quality of resources collected by Melipona rufiventris Lepeletier in the Atlantic Forest at Ubatuba city, São Paulo state, Brazil (44º48'W, 23º22'S). Bees carrying pollen and/or nectar were captured at nest entrances during 5 min every hour, from sunrise to sunset, once a month. Pollen loads were counted and saved for acetolysis. Nectar was collected, the volume was determined and the total dissolved solids were determined by refractometer. Air temperature, relative humidity and light intensity were also registered. The number of pollen loads reached its maximum value between 70% and 90% of relative humidity and 18ºC and 23ºC; for nectar loads this range was broader, 50-90% and 20-30ºC. The number of pollen loads increased as relative humidity rose (rs = 0.401; P < 0.01) and high temperatures had a strong negative influence on the number of pollen loads collected (rs = -0.228; P < 0.01). The number of nectar loads positively correlated with temperature (rs = 0.244; P < 0.01) and light intensity (rs = 0.414; P < 0.01). The percentage of total dissolved solids (TDS) on nectar loads positively correlated with temperature and light intensity (rs = 0.361; P < 0.01 and rs = 0.245; P < 0.01), negatively correlated with relative humidity (rs = -0.629; P < 0.01), and it increased along the day. Most nectar loads had TDS between 11% and 30%, with an average of 24.7%. The volume measures did not show any pattern. Important pollen sources were Sapindaceae, Anacardiaceae, Rubiaceae, Arecaceae, Solanaceae and Myrtaceae; nectar sources were Sapindaceae, Fabaceae, Rubiaceae, Arecaceae and Solanaceae.

Composição química das sementes de Archontophoenix alexandrae H. Wendl. & Drude (Arecaceae Seed chemical composition of Archontophoenix alexandrae H. Wendl. & Drude (Arecaceae

Directory of Open Access Journals (Sweden)

Maria Isabel Vallilo

2004-10-01

Full Text Available Sementes de Archontophoenix alexandrae extraídas de frutos coletados no Parque Estadual da Cantareira, São Paulo, foram analisadas quanto à composição química, ao perfil de ácidos graxos do óleo e aos teores de minerais, visando avaliar o seu potencial alimentício. Detectaram-se alto teor de fibras alimentares (38,80% p/p e umidade (47,72% p/p. Na fração oleosa, apesar do baixo conteúdo de óleo encontrado (2,74% p/p, predominaram os ácidos palmítico (19,80% p/p, entre os saturados, e oléico (42% p/p e linoléico (13% p/p, quanto aos insaturados. A presença, no óleo, de alfa-tocoferol (vitamina E equivalente a 4,0 mg 100 g-1 e de delta-tocoferol (1,8 mg 100 g-1 confere ao óleo certa estabilidade oxidativa. Embora contendo minerais como K, P, S, Ca, Fe, Zn, Se e Cu, lipídios e fibras alimentares, a presença do elemento Pb (2,74 mg kg-1 inviabiliza o consumo dessas sementes como alimento da avifauna e sinaliza contaminação antrópica no local de coleta.Seeds of Archontophoenix alexandrae, extracted from fruits collected at the Cantareira State Park, São Paulo, Brazil, were analyzed for chemical composition, oil fatty acids profiles and mineral content aiming to evaluate their nutritional potential. High values of dietary fibers (38.80% w/w and humidity (47.72% w/w were found. Palmitic acid (19.80% w/w was predominant among the saturated oil fraction, and oleic (42% w/w and linoleic (13% w/w among the insaturated oil fraction. The presence of alpha-tocopherol (vitamin E equivalent to 4.0mg 100g-1 and delta-tocopherol (1.8 mg 100g-1 confers some oxidative stability to the oil. Even containing minerals such as K, P, S, Ca, Zn, Se and Cu, lipids and dietary fibers, the presence of Pb (2.74mg kg-1 makes its consume unviable for avifauna, as well as it indicates anthropic contamination at the collect spot.

The large carpenter bees of central Saudi Arabia, with notes on the biology of Xylocopa sulcatipes Maa (Hymenoptera, Apidae, Xylocopinae

Directory of Open Access Journals (Sweden)

Mohammed Hannan

2012-06-01

Full Text Available The large carpenter bees (Xylocopinae, Xylocopa Latreille occurring in central Saudi Arabia are reviewed. Two species are recognized in the fauna, Xylocopa (Koptortosoma aestuans (Linnaeus and X. (Ctenoxylocopa sulcatipes Maa. Diagnoses for and keys to the species of these prominent components of the central Saudi Arabian bee fauna are provided to aid their identification by pollination researchers active in the region. Females and males of both species are figured and biological notes provided for X. sulcatipes. Notes on the nesting biology and ecology of X. sulcatipes are appended. As in studies for this species from elsewhere, nests were found in dried stems of Calotropis procera (Aiton (Asclepiadaceae and Phoenix dactylifera L. (Arecaceae.

Identifying Breast Cancer Oncogenes

Science.gov (United States)

2011-10-01

cells we observed that it promoted transformation of HMLE cells, suggesting a tumor suppressive role of Merlin in breast cancer (Figure 4B). A...08-1-0767 TITLE: Identifying Breast Cancer Oncogenes PRINCIPAL INVESTIGATOR: Yashaswi Shrestha...Standard Form 298 (Rev. 8-98) Prescribed by ANSI Std. Z39.18 W81XWH-08-1-0767 Identifying Breast Cancer Oncogenes Yashaswi Shrestha Dana-Farber

Management of the palm Astrocaryum chambira Burret (Arecaceae in northwest Amazon

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Néstor García

2015-03-01

Full Text Available We studied the management of the fiber-producing chambira palm Astrocaryum chambira by indigenous people in the Colombian Amazon. Between 2009 and 2012, we visited four communities and two marketing centers, where we interviewed 12 people. In addition, we specifically observed A. chambira harvesting, processing, and commercialization; studied palm populations at five localities; measured leaf production rate; and integrated secondary data. At least 21 aboriginal groups in the Colombian Amazon use chambira fiber. The palm grows in association with human communities, and it has been widely used and managed in past agroforestry systems. The fiber is obtained from the unexpanded leaves of juvenile or adult palms, and harvesting is often unsustainable because of overharvesting acaulescent palms or of cutting down adult palms. This is leading to a depletion of palm population. Annual leaf production rate was 1.59-2.89 leaves/palm year−1, which is lower than that reported in other studies. Based in our results, we recommended a harvest of 1 leaf/palm year−1 in acaulescent palms, and 1-2 leaves/palm year−1 in stemmed palms. Chambira-derived products are mostly handicrafts for marketing, and their trade represents 40%-100% of artisan household cash income. Improving the management of chambira palms requires the introduction of non-destructive harvest techniques and a wider use of the palm in agroforestry systems. An analysis of traditional management practices and of the role of chambira among Amerindian people indicates that A. chambira was an incipient domesticate at the time of the European conquest.

Coconut (Cocos nucifera L.: Arecaceae): in health promotion and disease prevention.

Science.gov (United States)

DebMandal, Manisha; Mandal, Shyamapada

2011-03-01

Coconut, Cocos nucifera L., is a tree that is cultivated for its multiple utilities, mainly for its nutritional and medicinal values. The various products of coconut include tender coconut water, copra, coconut oil, raw kernel, coconut cake, coconut toddy, coconut shell and wood based products, coconut leaves, coir pith etc. Its all parts are used in someway or another in the daily life of the people in the traditional coconut growing areas. It is the unique source of various natural products for the development of medicines against various diseases and also for the development of industrial products. The parts of its fruit like coconut kernel and tender coconut water have numerous medicinal properties such as antibacterial, antifungal, antiviral, antiparasitic, antidermatophytic, antioxidant, hypoglycemic, hepatoprotective, immunostimulant. Coconut water and coconut kernel contain microminerals and nutrients, which are essential to human health, and hence coconut is used as food by the peoples in the globe, mainly in the tropical countries. The coconut palm is, therefore, eulogised as 'Kalpavriksha' (the all giving tree) in Indian classics, and thus the current review describes the facts and phenomena related to its use in health and disease prevention. Copyright © 2011 Hainan Medical College. Published by Elsevier B.V. All rights reserved.

Palms (Arecaceae) from the restingas of Rio de Janeiro State, Brazil

OpenAIRE

Reis, Ricardo Carneiro da Cunha

2006-01-01

Neste trabalho foram coletadas, identificadas e sistematizadas as palmeiras das restingas do estado do Rio de Janeiro. Para a coleta de material, foram eleitas cinco estações de coleta consideradas representativas em termos de ocorrência de palmeiras. Foram identificadas 11 espécies, as quais podem ser reconhecidas pelo uso da chave dicotômica fornecida, e confirmadas pelas descrições e fotos apresentadas. O tratamento taxonômico das espécies encontra-se complementado por informações de distr...

In Vitro and Ex Vivo Chemopreventive Action of Mauritia flexuosa Products

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Joilane Alves Pereira-Freire

2018-01-01

Full Text Available Mauritia flexuosa (Arecaceae, known as “Buriti,” is a Brazilian palm tree with high economic potential for local communities. Herein, we investigated the phytochemistry profile and antioxidant potential of M. flexuosa fruits and determined the bioaccessibility of phenolic compounds. Peels revealed upper values for phenols, flavonoids, carotenoids, tannins, and ascorbic acid when compared to the pulps and endocarps. All samples showed capacity to scavenger free radicals (0.5, 1.0, 2.0, 4.0, and 8.0 mg/mL but peels presented higher scavenger action in all methods explored. Phenolic compounds identified by HPLC displayed reduced bioaccessibility after in vitro simulated gastrointestinal digestion for pulp (38.7%, peel (18.7%, and endocarp (22.3% extracts (P<0.05. Buriti fruits also protected rat blood cells against lysis induced by peroxyl radicals. We demonstrated the promising chemopreventive potentialities of M. flexuosa fruits and their by-products and peels with higher quantities of bioactive compounds and phenolic substances before and after in vitro bioaccessibility investigation. In Brazil, these parts are discarded or underused, mainly as feed for ruminant animals. Consequently, it is extremely important to explore nutritional characteristics of these by-products for human/livestock foods and to install biofriendly techniques and sustainable biotechnology handling of natural resources.

Genetic structure, mating system, and long-distance gene flow in heart of palm (Euterpe edulis Mart.).

Science.gov (United States)

Gaiotto, F A; Grattapaglia, D; Vencovsky, R

2003-01-01

We report a detailed analysis of the population genetic structure, mating system, and gene flow of heart of palm (Euterpe edulis Mart.-Arecaceae) in central Brazil. This palm is considered a keystone species because it supplies fruits for birds and rodents all year and is intensively harvested for culinary purposes. Two populations of this palm tree were examined, using 18 microsatellite loci. The species displays a predominantly outcrossed mating system (tm = 0.94), with a probability of full sibship greater than 70% within open-pollinated families. The following estimates of interpopulation genetic variation were calculated and found significant: FIT = 0.17, FIS = 0.12, FST = 0.06, and RST = 0.07. This low but significant level of interpopulation genetic variation indicates high levels of gene flow. Two adult trees were identified as likely seed parents (P > 99.9%) of juveniles located at a distance of 22 km. Gene flow over such distances has not been reported before for tropical tree species. The establishment and management of in situ genetic reserves or ex situ conservation and breeding populations for E. edulis should contemplate the collection of several hundreds open-pollinated maternal families from relatively few distant populations to maximize the genetic sampling of a larger number of pollen parents.

The NOAA Dataset Identifier Project

Science.gov (United States)

de la Beaujardiere, J.; Mccullough, H.; Casey, K. S.

2013-12-01

The US National Oceanic and Atmospheric Administration (NOAA) initiated a project in 2013 to assign persistent identifiers to datasets archived at NOAA and to create informational landing pages about those datasets. The goals of this project are to enable the citation of datasets used in products and results in order to help provide credit to data producers, to support traceability and reproducibility, and to enable tracking of data usage and impact. A secondary goal is to encourage the submission of datasets for long-term preservation, because only archived datasets will be eligible for a NOAA-issued identifier. A team was formed with representatives from the National Geophysical, Oceanographic, and Climatic Data Centers (NGDC, NODC, NCDC) to resolve questions including which identifier scheme to use (answer: Digital Object Identifier - DOI), whether or not to embed semantics in identifiers (no), the level of granularity at which to assign identifiers (as coarsely as reasonable), how to handle ongoing time-series data (do not break into chunks), creation mechanism for the landing page (stylesheet from formal metadata record preferred), and others. Decisions made and implementation experience gained will inform the writing of a Data Citation Procedural Directive to be issued by the Environmental Data Management Committee in 2014. Several identifiers have been issued as of July 2013, with more on the way. NOAA is now reporting the number as a metric to federal Open Government initiatives. This paper will provide further details and status of the project.

Parameter identifiability and redundancy: theoretical considerations.

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Mark P Little

Full Text Available BACKGROUND: Models for complex biological systems may involve a large number of parameters. It may well be that some of these parameters cannot be derived from observed data via regression techniques. Such parameters are said to be unidentifiable, the remaining parameters being identifiable. Closely related to this idea is that of redundancy, that a set of parameters can be expressed in terms of some smaller set. Before data is analysed it is critical to determine which model parameters are identifiable or redundant to avoid ill-defined and poorly convergent regression. METHODOLOGY/PRINCIPAL FINDINGS: In this paper we outline general considerations on parameter identifiability, and introduce the notion of weak local identifiability and gradient weak local identifiability. These are based on local properties of the likelihood, in particular the rank of the Hessian matrix. We relate these to the notions of parameter identifiability and redundancy previously introduced by Rothenberg (Econometrica 39 (1971 577-591 and Catchpole and Morgan (Biometrika 84 (1997 187-196. Within the widely used exponential family, parameter irredundancy, local identifiability, gradient weak local identifiability and weak local identifiability are shown to be largely equivalent. We consider applications to a recently developed class of cancer models of Little and Wright (Math Biosciences 183 (2003 111-134 and Little et al. (J Theoret Biol 254 (2008 229-238 that generalize a large number of other recently used quasi-biological cancer models. CONCLUSIONS/SIGNIFICANCE: We have shown that the previously developed concepts of parameter local identifiability and redundancy are closely related to the apparently weaker properties of weak local identifiability and gradient weak local identifiability--within the widely used exponential family these concepts largely coincide.

Fitossociologia do componente arbóreo na floresta turfosa do Parque Nacional da Lagoa do Peixe, Rio Grande do Sul, Brasil Phytosociology of the tree component in a peat forest of the National Park Lagoa do Peixe, Rio Grande do Sul, Brazil

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Lúcia Patrícia Pereira Dorneles

2004-12-01

Full Text Available A composição florística e a estrutura do componente arbóreo foram analisadas na floresta de restinga turfosa do Parque Nacional da Lagoa do Peixe (31º04' - 31º29'S, 50º461 - 51º09'W, localizado na região central da Planície Costeira do Rio Grande do Sul, Brasil. O componente arbóreo foi amostrado pelo método de quadrantes centrados, incluindo indivíduos com DAP mínimo de 5cm. Foram amostrados 60 pontos, distribuídos ao longo de quatro transectos paralelos, aproximadamente com a mesma orientação NE-SW do sistema lagunar. A composição florística resultou em 14 famílias, 18 gêneros e 21 espécies. A densidade arbórea total estimada para um hectare foi de 3.479 indivíduos. A família com maior riqueza específica foi Myrtaceae. As espécies mais importantes foram Syagrus romanzoffiana (Cham. Glassman, Myrcia multiflora (Lam. DC., Ilex pseudobuxus Reissek, Citharexylum myrianthum Cham. e Dendropanax cuneatum Decne. & Planch. A diversidade específica estimada pelo índice de Shannon (H' foi de 2,601 nats.ind.-1 e a equabilidade (J de 0,854, similar aos resultados obtidos em outros estudos realizados em florestas brejosas ou turfosas do Sul e Sudeste do Brasil.Floristic composition and structure of the tree component were analyzed in a coastal peat forest of the National Park Lagoa do Peixe (31º04' - 31º29'S, 50º46' - 51º09'W, located in the central region of the coastal plain of Rio Grande do Sul, Brazil. The tree component was sampled according to the point-centered quarter method, including individuals with a minimum DBH of 5cm. Sixty sample points were distributed along four parallel transects, approximately with the same NE-SW orientation as the lagoon system. Floristic composition resulted in 14 families, 18 genera and 21 species. The total tree density estimated for one hectare was 3,479 individuals. The family with highest species richness was Myrtaceae. The most important species were Syagrus romanzoffiana (Cham

The Protein Identifier Cross-Referencing (PICR service: reconciling protein identifiers across multiple source databases

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Leinonen Rasko

2007-10-01

Full Text Available Abstract Background Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. Partial solutions for protein identifier mapping exist but they are limited to specific species or techniques and to a very small number of databases. As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs. Results We have created the Protein Identifier Cross-Reference (PICR service, a web application that provides interactive and programmatic (SOAP and REST access to a mapping algorithm that uses the UniProt Archive (UniParc as a data warehouse to offer protein cross-references based on 100% sequence identity to proteins from over 70 distinct source databases loaded into UniParc. Mappings can be limited by source database, taxonomic ID and activity status in the source database. Users can copy/paste or upload files containing protein identifiers or sequences in FASTA format to obtain mappings using the interactive interface. Search results can be viewed in simple or detailed HTML tables or downloaded as comma-separated values (CSV or Microsoft Excel (XLS files suitable for use in a local database or a spreadsheet. Alternatively, a SOAP interface is available to integrate PICR functionality in other applications, as is a lightweight REST interface. Conclusion We offer a publicly available service that can interactively map protein identifiers and protein sequences to the majority of commonly used protein databases. Programmatic access is available through a standards-compliant SOAP interface or a lightweight REST interface. The PICR

Near Identifiability of Dynamical Systems

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Hadaegh, F. Y.; Bekey, G. A.

1987-01-01

Concepts regarding approximate mathematical models treated rigorously. Paper presents new results in analysis of structural identifiability, equivalence, and near equivalence between mathematical models and physical processes they represent. Helps establish rigorous mathematical basis for concepts related to structural identifiability and equivalence revealing fundamental requirements, tacit assumptions, and sources of error. "Structural identifiability," as used by workers in this field, loosely translates as meaning ability to specify unique mathematical model and set of model parameters that accurately predict behavior of corresponding physical system.

The Neogene rise of the tropical Andes facilitated diversification of wax palms (Ceroxylon: Arecaceae) through geographical colonization and climatic niche separation

DEFF Research Database (Denmark)

Sanín, María José; Kissling, W. Daniel; Bacon, Christine D.

2016-01-01

The tropical Andes are a biodiversity hotspot, partly due to their rich and complex floristic composition. A fundamental question regarding this outstanding biodiversity is what role the Andean orogeny has played in species diversification. Ceroxylon is a genus of endemic Andean palms that stands...... gradients. Ancestral areas were reconstructed under a model allowing for founder-event speciation and climatic niches were inferred from climatic variables at present-day occurrences of all species. Niche evolution in a phylogenetic framework was evaluated by testing differences between the climatic niches...... of clades. Our analyses identified four main clades, with a general pattern of diversification through geographical colonization from south to north after the Pliocene uplift of the northern Andes. Adaptation to low temperatures was conserved at the generic level, with climatic niche differentiation among...

Ecological aspects of Rhodnius nasutus Stål, 1859 (Hemiptera: Reduviidae: Triatominae in palms of the Chapada do Araripe in Ceará, Brazil

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Fernando Braga Stehling Dias

2008-12-01

Full Text Available The aim of this work is to present aspects related to the ecology of Rhodnius nasutus Stål, 1859 in palms from Chapada do Araripe in Ceará, Brazil. The following five species of palms were investigated: babaçu (Attalea speciosa, buriti (Mauritia flexuosa, carnaúba (Copernicia prunifera, catolé (Syagrus oleracea and macaúba-barriguda (Acrocomia intumescens. Fifth palms were dissected (10 specimens for each species. The overall infestation index was 86%, with a total of 521 triatomines collected. The Trypanosoma cruzi Chagas, 1909 Index was 16.8% and two insects presented mixed infection with Trypanosoma rangeli Tejera, 1920. A precipitin test showed that R. nasutus from palms of Chapada do Araripe are associated with opossum and bird although other possible bloodmeals were observed. Our results showing a high index of infestation of the palms as well as T. cruzi infection, the association of R. nasutus with the most diverse species of palms and proximity of these palms to houses demonstrate the importance of this area for sylvatic T. cruzi transmission and suggest the need for epidemiological surveillance in the region of the Chapada do Araripe.

Dieta de um grupo de mico-leão-preto, Leontopithecus chrysopygus (Mikan (Mammalia, Callitrichidae, na Estação Ecológica dos Caetetus, São Paulo Diet of a black lion tamarin group, Leontopithecus chrysopygus (Mikan (Mammalia, Callitrichidae, in Caetetus Ecological Station, São Paulo

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Fernando de Camargo Passos

1999-01-01

Full Text Available In this study carried out in the Caetetus Ecological Station, Sao Paulo, southeastern Brazil, a wild group of black lion tamarins was accompanied during 1989 to 1991, to analyse the dietary habits of the species. The scan sampling method was used to gather data. A total of 961 behaviors were recorded, of which feeding occupied 23.3% of the time involved in the behaviors. The major dietary components observed in the black lion tamarins were fruits, tree exudates and animal preys (67.9%, 22.8% and 8.9% respectively. Fruits varied monthly from 47.4 to 97.1 %, being consumed more during the rainy season, while tree exudates varied from 0 to 54.7%, and were consumed mainly during the dry season. The animal prey accounted for 0 to 15.8% of the diet. The most important dietary resource for the black lion tamarins was the fruit of Syagrus romanzoffiana Glass., representing 29.9% of the foraging observations. The diet exhibited pronounced differences among dry and rainy seasons, presumably as a consequence of the food shortage of fruits during dry season.

Potencial de árvores frutíferas para a atração de aves

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Leonardo Ribeiro Góes-Silva

2012-04-01

Full Text Available O objetivo deste trabalho é avaliar o potencial atrativo de aves presente em oito espécies de árvores frutíferas: Callicarpa reevesii Wall.ex Walp., Ficus microcarpa L.f., Ficus tomentella Miq., Michelia champaca L., Morus nigra L., Nectandra nitidula Nees, Schinus terebinthifolius Raddi e Syagrus romanzoffiana Cham. A interação de aves-plantas foi observada no município de Ouro Fino (MG, nos domínios da Serra da Mantiqueira. As referentes árvores foram observadas durante 24 horas nos períodos em que estavam frutificando, entre julho de 2007 a abril de 2008. Com o uso de ferramentas de análise de diversidade biológica, pode-se constatar que as espécies com maiores potenciais de atração de aves foram Ficus microcarpa, Ficus tomentella, Morus nigra, Nectandra nitidula e Schinus terebinthifolius e as espécies de aves que apresentaram alto índice de interação com as árvores foram Dacnis cayana, Elaenia flavogaster, Tangara cayana, Tersina viridis, Thraupis sayaca, Turdus amaurochalinus e Turdus rufiventris.

Phytosociology of a coastal peat forest of the Toto Beach, Municipality of Pelotas, RS, Brazil

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Tiago Schuch Lemos Venzke

2015-06-01

Full Text Available Floristic composition and structure of the tree component were analyzed in a coastal peat forest of the Toto Beach, located in the southern region of Lagoa dos Patos (31º43’39”S e 52º12’04”W. The phytosociological sampling was conducted on a sample area of 0.1 ha. All trees with DBH ≥ 4.8 cm were included. The species richness found was equivalent to 23 species distributed in 20 genera and 15 families. Two endangered species were sampled. The total tree density estimated for one hectare was equivalent to 3,480 trees. The most important species in the forest structure were Ocotea sp., Myrcia multiflora, Psidium cattleyanum, Ocotea pulchella, Myrsine lorentziana, Citharexyllum myrianthum, Ilex dumosa, Syagrus romanzoffiana, Guapira opposita and Sebastiania brasiliensis. The species diversity estimated by the Shannon index was 2,174 nats.ind.-1 and evenness (J was 0.684. The forest structure, number of taxa and diversity are similar to other surveys carried out in swamp forests of southern and southeastern Brazil. These parameters must be considered in the environmental licensing and ecological restoration projects of this forest type.

STUDY OF THE ARBORIZATION AND GREEN AREAS OF THE CAMPUS II OF THE FEDERAL UNIVERSITY OF GOIÁS, BRAZIL ESTUDO DA ARBORIZAÇÃO E DAS ÁREAS VERDES DO CAMPUS II DA UNIVERSIDADE FEDERAL DE GOIÁS

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Márcia Yuriko Hashimoto

2007-09-01

Full Text Available

Continuing the study of the green areas of the Campus II of the Federal University of Goiás it was developed a research in order to check the situation of the arborization at Campus. The sites of the present study consisted of spaces among buildings, streets, places, parking places and a little wood. A scale of 1:5000 was used to localize them in an aerophotogramatic plant The plants were located and identified. The native species are remainders of the semideciduous forest occurring in the locality, e. g. Apuleia molaris Spruce (garapa, Anadenanthera peregrina L. (angico, Cedrela fissilis Vel. (cedro and Tabebuia serratifolia (Vahl. Nichols. (ipê amarelo and many other species. Spathodea campanulata Beauv. (espatódea, Delonix regia Rafin (flamboyant, Pachira aquatica Aublet. (munguba, Caesalpinia echinata Lan. (pau-brasil and Syagrus oleracea (Mat. Becc. (guariroba are some of the exotic species from other states and from the flora of Goiás. The totality of 1,389 individuals were distributed among 43 families and 84 genres. The study showed that some species have not been planted in adequate localities because of the high tonnage, root system and falling of the leaves. This investigation will permit an amplification, improvement of the arborization and recomposition of the green areas of Campus II. It will also contribute to future landscaping projects.

Em continuidade ao estudo das áreas verdes do Campus II da UFG, desenvolveu-se um trabalho para verificar a situação da arborização localizada no referido Campus. O local para o estudo da vegetação consistiu nos espaços entre prédios, sistema viário, praças, estacionamentos e mini-bosque e para a localização dos mesmos usou-se uma planta aerofotogram

Identifying tier one key suppliers.

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Wicks, Steve

2013-01-01

In today's global marketplace, businesses are becoming increasingly reliant on suppliers for the provision of key processes, activities, products and services in support of their strategic business goals. The result is that now, more than ever, the failure of a key supplier has potential to damage reputation, productivity, compliance and financial performance seriously. Yet despite this, there is no recognised standard or guidance for identifying a tier one key supplier base and, up to now, there has been little or no research on how to do so effectively. This paper outlines the key findings of a BCI-sponsored research project to investigate good practice in identifying tier one key suppliers, and suggests a scalable framework process model and risk matrix tool to help businesses effectively identify their tier one key supplier base.

Edaphic and light conditions of sympatric plant morphotypes in western Amazonia

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Julissa Roncal

2014-05-01

Full Text Available Here I present a dataset of edaphic and light conditions associated with the occurrence of sympatric morphotypes of Geonoma macrostachys (Arecaceae/Palmae, a candidate case study from Amazonia hypothesized to have evolved under ecological speciation. Transects were established in three lowland rainforests in Peru, and the abundance of each local morphotype of this species was recorded in a total area of 4.95 hectares. Composite soil samples and hemispherical photographs were taken along the transects were the species occurred to obtain information on soil nutrients, soil texture, and indirect measurements of light availability. The raw and summary tables disclose the characteristics of each study site and habitats within them, which could be useful to soil scientists, ecologists, and conservationists engaged in similar research activities or meta-analyses in Amazonia.

[Wetlands dominated by palms (Arecaceae), emphasis in those in the New World].

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Myers, Ronald L

2013-09-01

It is well known that most forests in humid tropical lowlands are species rich, and the popular view is that most species are represented by only a few individuals. Despite this common understanding of high richness and low species dominance, within humid tropical regions there are extensive forested ecosystems composed by only few species. These nearly monospecific forests usually occupy poorly drained soils and, except for the mangroves, are quite understudied. In this paper, I review the literature and my own field notes on more than three years studying the structure of palm swamps in Caribbean Costa Rica and Florida to describe some of the major vegetation associations in wetlands dominated by palm species in the Neotropical Region, although I also include some information about similar systems in the Old World Tropics. I mention the most abundant species that compose those palm dominated swamps and -whenever possible- describe forest structure, known distribution, and uses.

Environmental and spatial controls of palm (Arecaceae) species richness across the Americas

DEFF Research Database (Denmark)

Bjorholm, Stine; Svenning, Jens-Christian; Skov, Flemming

2005-01-01

Our analysis suggests that in the Americas, palm species richness at spatial scales from 1° to 10° is most strongly controlled by water availability, although unknown broad-scale factors, perhaps soil, historical processes or geometric constraints, are also important.......Our analysis suggests that in the Americas, palm species richness at spatial scales from 1° to 10° is most strongly controlled by water availability, although unknown broad-scale factors, perhaps soil, historical processes or geometric constraints, are also important....

Pattern of morphological variation and diversity of Cocos nucifera (Arecaceae) in Mexico.

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Zizumbo-Villarreal, D; Piñero, D

1998-06-01

The pattern of morphological variation of Cocos nucifera in Mexico was statistically and numerically evaluated. Forty-one populations were analyzed, using 17 morphological fruit characters. Principal components and cluster analyses indicated four main groups of coconut populations that showed high similarity with four different genotypes recently imported into Mexico from areas that could be the origin of Mexican coconut populations. These four genotypes were evaluated with regard to the lethal yellowing disease in Jamaica and showed a differential susceptibility. Therefore it is possible to speculate upon a difference in susceptibility of the Mexican genotypes. The analysis of correlation between morphological and geographical distances showed a high positive correlation that supports: (1) historical evidence that indicates early introductions of coconut from different regions of the world, (2) that on both coasts of Mexico two different patterns of dispersal were involved: continuous and in jumps. Collectively these results suggest that the impact of the lethal yellowing disease on coconut populations will vary depending on the specific area and the origin of its coconuts.

Ecological interactions shape the dynamics of seed predation in Acrocomia aculeata (Arecaceae).

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Pereira, Anielle C F; Fonseca, Francine S A; Mota, Gleicielle R; Fernandes, Ane K C; Fagundes, Marcílio; Reis-Júnior, Ronaldo; Faria, Maurício L

2014-01-01

The complex network of direct and indirect relationships determines not only the species abundances but also the community characteristics such as diversity and stability. In this context, seed predation is a direct interaction that affects the reproductive success of the plant. For Acrocomia aculeata, the seed predation by Pachymerus cardo and Speciomerus revoili in post-dispersal may destroy more than 70% of the propagules and is influenced by the herbivory of the fruits during pre-dispersal. Fruits of plants with a higher level of herbivory during pre-dispersal are less attacked by predators in post-dispersal. We proposed a hypothesis that describes this interaction as an indirect defense mediated by fungi in a multitrophic interaction. As explanations, we proposed the predictions: i) injuries caused by herbivores in the fruits of A. aculeata favor fungal colonization and ii) the colonization of A. acuelata fruit by decomposing fungi reduces the selection of the egg-laying site by predator. For prediction (i), differences in the fungal colonization in fruits with an intact or damaged epicarp were evaluated in fruits exposed in the field. For prediction (ii), we performed fruit observations in the field to determine the number of eggs of P. cardo and/or S. revoili per fruit and the amount of fungal colonization in the fruits. In another experiment, in the laboratory, we use P. cardo females in a triple-choice protocol. Each insect to choose one of the three options: healthy fruits, fruits with fungus, or an empty pot. The proposed hypothesis was corroborated. Fruits with injuries in the epicarp had a higher fungal colonization, and fruits colonized by fungi were less attractive for egg-laying by seed predators. This study emphasizes the importance of exploring the networks of interactions between multitrophic systems to understand the dynamics and maintenance of natural populations.

Ecological Interactions Shape the Dynamics of Seed Predation in Acrocomia aculeata (Arecaceae)

Science.gov (United States)

Pereira, Anielle C. F.; Fonseca, Francine S. A.; Mota, Gleicielle R.; Fernandes, Ane K. C.; Fagundes, Marcílio; Reis-Júnior, Ronaldo; Faria, Maurício L.

2014-01-01

Background The complex network of direct and indirect relationships determines not only the species abundances but also the community characteristics such as diversity and stability. In this context, seed predation is a direct interaction that affects the reproductive success of the plant. For Acrocomia aculeata, the seed predation by Pachymerus cardo and Speciomerus revoili in post-dispersal may destroy more than 70% of the propagules and is influenced by the herbivory of the fruits during pre-dispersal. Fruits of plants with a higher level of herbivory during pre-dispersal are less attacked by predators in post-dispersal. We proposed a hypothesis that describes this interaction as an indirect defense mediated by fungi in a multitrophic interaction. As explanations, we proposed the predictions: i) injuries caused by herbivores in the fruits of A. aculeata favor fungal colonization and ii) the colonization of A. acuelata fruit by decomposing fungi reduces the selection of the egg-laying site by predator. Methodology/Principal Findings For prediction (i), differences in the fungal colonization in fruits with an intact or damaged epicarp were evaluated in fruits exposed in the field. For prediction (ii), we performed fruit observations in the field to determine the number of eggs of P. cardo and/or S. revoili per fruit and the amount of fungal colonization in the fruits. In another experiment, in the laboratory, we use P. cardo females in a triple-choice protocol. Each insect to choose one of the three options: healthy fruits, fruits with fungus, or an empty pot. The proposed hypothesis was corroborated. Fruits with injuries in the epicarp had a higher fungal colonization, and fruits colonized by fungi were less attractive for egg-laying by seed predators. Conclusion/Significance This study emphasizes the importance of exploring the networks of interactions between multitrophic systems to understand the dynamics and maintenance of natural populations. PMID:24875386

Identifying Strategic Scientific Opportunities

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As NCI's central scientific strategy office, CRS collaborates with the institute's divisions, offices, and centers to identify research opportunities to advance NCI's vision for the future of cancer research.

SOCIODEMOGRAPHIC DATA USED FOR IDENTIFYING ...

Science.gov (United States)

Due to unique social and demographic characteristics, various segments of the population may experience exposures different from those of the general population, which, in many cases, may be greater. When risk assessments do not characterize subsets of the general population, the populations that may experience the greatest risk remain unidentified. When such populations are not identified, the social and demographic data relevant to these populations is not considered when preparing exposure estimates, which can underestimate exposure and risk estimates for at-risk populations. Thus, it is necessary for risk or exposure assessors characterizing a diverse population, to first identify and then enumerate certain groups within the general population who are at risk for greater contaminant exposures. The document entitled Sociodemographic Data Used for Identifying Potentially Highly Exposed Populations (also referred to as the Highly Exposed Populations document), assists assessors in identifying and enumerating potentially highly exposed populations. This document presents data relating to factors which potentially impact an individual or group's exposure to environmental contaminants based on activity patterns (how time is spent), microenvironments (locations where time is spent), and other socio-demographic data such as age, gender, race and economic status. Populations potentially more exposed to various chemicals of concern, relative to the general population

NIH Researchers Identify OCD Risk Gene

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... News From NIH NIH Researchers Identify OCD Risk Gene Past Issues / Summer 2006 Table of Contents For ... and Alcoholism (NIAAA) have identified a previously unknown gene variant that doubles an individual's risk for obsessive- ...

Opal phytolith and isotopic studies of "Restinga" communities of Maricá, Brazil, as a modern reference for paleobiogeoclimatic reconstruction

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Cátia Pereira dos Santos

2015-09-01

Full Text Available AbstractThe Maricá restinga, located in the eastern part of the Rio de Janeiro State (Brazil, corresponds to one of the few remaining preserved areas of the state's coastal plain. This paper reports on a study of the Maricá restinga plant communities and also presents an identification of the main plant species present in each community, with the objective of establishing reference collections, by the methods of the proxies opal phytoliths and stable carbon isotopes, for paleoenvironmental reconstructions of this coastal area during the Quaternary. Six plant communities, distributed perpendicularly to the coast line over sandy barriers, lagoonal plain, lagoon margin and weathered basement were identified: halophile-psamophile, scrub, herbaceous swamp, slack, shrubby vegetation and dry forest. In general, the plant species analyzed in each community presented low productivity of opal phytoliths, as only the Poaceae, Cyperaceae and Arecaceae families produce a great amount and diversity of morphotypes of opal phytoliths. The results of the analysis of stable carbon isotopes in sediments indicated a predominance of C3 or a mixture of C3 and C4 plants, presenting a close correlation with the results found in plants collected in each community. In conclusion, it was verified that the carbon isotope analysis associated with that of the opal phytoliths are good proxies for the reconstruction of vegetation in the study area.

Batrachedra nuciferae, an inflorescence-feeding moth associated with coconut, Cocos nucifera, and palmiste, Roystonea oleracea, in Trinidad, West Indies.

Science.gov (United States)

Cock, Matthew J W

2013-01-01

In 2006, Batrachedra nuciferae Hodges (Lepidoptera: Batrachedridae) was the first phytophagous insect to be reported from inflorescences of coconut, Cocos nucifera L. (Arecales: Arecaceae), in Trinidad, West Indies. At that time, it was suggested to be an introduced species contributing to decreasing coconut yields on the island and potentially a threat to other palms. In this preliminary study, inflorescences of coconut, seven indigenous palms, and six exotic ornamental palms were surveyed in several areas of Trinidad. Caterpillars of more than 10 species of Lepidoptera were found and reared through to the adult stage. Batrachedra nuciferae was positively identified. It was concluded that the caterpillars of B. nuciferae feed on pollen in the male flowers of coconut and palmiste or royal palm, Roystonea oleracea (Jacquin) O.F. Cook. There was no evidence that B. nuciferae bred on any of the other palms surveyed, but it is not conclusive that they do not do so. A parasitoid, Apanteles (sensu lato) sp. (Hymenoptera: Braconidae), of B. nuciferae was reared. On available information, B. nuciferae is more likely to be an indigenous species that has hitherto been overlooked than an introduced species. In view of what is known about damage-yield relationships and biological control agents, B. nuciferae is unlikely to cause yield losses to coconut, so control measures are not justified.

Distributed Persistent Identifiers System Design

Directory of Open Access Journals (Sweden)

Pavel Golodoniuc

2017-06-01

Full Text Available The need to identify both digital and physical objects is ubiquitous in our society. Past and present persistent identifier (PID systems, of which there is a great variety in terms of technical and social implementation, have evolved with the advent of the Internet, which has allowed for globally unique and globally resolvable identifiers. PID systems have, by in large, catered for identifier uniqueness, integrity, and persistence, regardless of the identifier’s application domain. Trustworthiness of these systems has been measured by the criteria first defined by Bütikofer (2009 and further elaborated by Golodoniuc 'et al'. (2016 and Car 'et al'. (2017. Since many PID systems have been largely conceived and developed by a single organisation they faced challenges for widespread adoption and, most importantly, the ability to survive change of technology. We believe that a cause of PID systems that were once successful fading away is the centralisation of support infrastructure – both organisational and computing and data storage systems. In this paper, we propose a PID system design that implements the pillars of a trustworthy system – ensuring identifiers’ independence of any particular technology or organisation, implementation of core PID system functions, separation from data delivery, and enabling the system to adapt for future change. We propose decentralisation at all levels — persistent identifiers and information objects registration, resolution, and data delivery — using Distributed Hash Tables and traditional peer-to-peer networks with information replication and caching mechanisms, thus eliminating the need for a central PID data store. This will increase overall system fault tolerance thus ensuring its trustworthiness. We also discuss important aspects of the distributed system’s governance, such as the notion of the authoritative source and data integrity

29 CFR 4010.7 - Identifying information.

Science.gov (United States)

2010-07-01

... 29 Labor 9 2010-07-01 2010-07-01 false Identifying information. 4010.7 Section 4010.7 Labor Regulations Relating to Labor (Continued) PENSION BENEFIT GUARANTY CORPORATION CERTAIN REPORTING AND DISCLOSURE REQUIREMENTS ANNUAL FINANCIAL AND ACTUARIAL INFORMATION REPORTING § 4010.7 Identifying information...

Identifying Critical Cross-Cultural School Psychology Competencies.

Science.gov (United States)

Rogers, Margaret R.; Lopez, Emilia C.

2002-01-01

Study sought to identify critical cross-cultural competencies for school psychologists. To identify the competencies, an extensive literature search about cross-cultural school psychology competencies was conducted, as well as a questionnaire to ask expert panelists. The 102 competencies identified cover 14 major domains of professional activities…

Parameter identifiability of linear dynamical systems

Science.gov (United States)

Glover, K.; Willems, J. C.

1974-01-01

It is assumed that the system matrices of a stationary linear dynamical system were parametrized by a set of unknown parameters. The question considered here is, when can such a set of unknown parameters be identified from the observed data? Conditions for the local identifiability of a parametrization are derived in three situations: (1) when input/output observations are made, (2) when there exists an unknown feedback matrix in the system and (3) when the system is assumed to be driven by white noise and only output observations are made. Also a sufficient condition for global identifiability is derived.

MXLKID: a maximum likelihood parameter identifier

International Nuclear Information System (INIS)

Gavel, D.T.

1980-07-01

MXLKID (MaXimum LiKelihood IDentifier) is a computer program designed to identify unknown parameters in a nonlinear dynamic system. Using noisy measurement data from the system, the maximum likelihood identifier computes a likelihood function (LF). Identification of system parameters is accomplished by maximizing the LF with respect to the parameters. The main body of this report briefly summarizes the maximum likelihood technique and gives instructions and examples for running the MXLKID program. MXLKID is implemented LRLTRAN on the CDC7600 computer at LLNL. A detailed mathematical description of the algorithm is given in the appendices. 24 figures, 6 tables

Identifying Information Focuses in Listening Comprehension

Science.gov (United States)

Zhang, Hong-yan

2011-01-01

The study explains the process of learners' listening comprehension within Halliday's information theory in functional grammar, including the skills of identifying focuses while listening in college English teaching. Identifying information focuses in listening is proved to improve the students' communicative listening ability by the means of a…

EZID: Long term identifiers made easy (Invited)

Science.gov (United States)

Starr, J.

2013-12-01

Scholarly research is producing ever increasing amounts of digital research data, and this data should be managed throughout the research life cycle both as part of good scientific practice, but also to comply with funder mandates, such as the 2013 OSTP Public Access Memo (http://www.whitehouse.gov/sites/default/files/microsites/ostp/ostp_public_access_memo_2013.pdf). By assigning unique and persistent identifiers to data objects, data managers can gain control and flexibility over what can be a daunting task. This is due to the fact that the objects can be moved to new locations without disruption to links, as long as the identifier target is maintained. EZID is a tool that makes assigning and maintaining unique, persistent identifiers easy. It was designed and built by California Digital Library (CDL) and has both a user interface and a RESTful API. EZID currently offers services for two globally unique, persistent identifier schemes: Digital Object Identifiers (DOIs) and Archival Resource Keys (ARKs). DOIs are identifiers originating from the publishing world and are in widespread use for journal articles. CDL is able to offer DOIs because of being a founding member of DataCite (http://www.datacite.org/), an international consortium established to provide easier access to scientific research data on the Internet. ARKs are identifiers originating from the library, archive and museum community. Like DOIs, they become persistent when the objects and identifier forwarding information is maintained. DOIs and ARKs have a key role in data management and, therefore, in data management plans. DOIs are the recommended identifier for use in data citation, and ARKs provide the maximum flexibility needed for data documentation and management throughout the early phases of a project. The two identifier schemes are able to be used together, and EZID is made to work with both. EZID clients, coming from education, research, government, and the private sector, are utilizing the

Football refereeing: Identifying innovative methods

Directory of Open Access Journals (Sweden)

Reza MohammadKazemi

2014-08-01

Full Text Available The aim of the present study is to identify the potentials innovation in football industry. Data were collected from 10 national and international referees, assistant referees and referees’ supervisors in Iran. In this study, technological innovations are identified that assist better refereeing performances. The analysis revealed a significant relationship between using new technologies and referees ‘performance. The results indicate that elite referees, assistant referees and supervisors agreed to use new technological innovations during the game. According to their comments, this kind of technology causes the referees’ performance development.

Ability of Slovakian Pupils to Identify Birds

Science.gov (United States)

Prokop, Pavol; Rodak, Rastislav

2009-01-01

A pupil's ability to identify common organisms is necessary for acquiring further knowledge of biology. We investigated how pupils were able to identify 25 bird species following their song, growth habits, or both features presented simultaneously. Just about 19% of birds were successfully identified by song, about 39% by growth habit, and 45% of…

IDENTIFIABILITY VERSUS HETEROGENEITY IN GROUNDWATER MODELING SYSTEMS

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A M BENALI

2003-06-01

Full Text Available Review of history matching of reservoirs parameters in groundwater flow raises the problem of identifiability of aquifer systems. Lack of identifiability means that there exists parameters to which the heads are insensitive. From the guidelines of the study of the homogeneous case, we inspect the identifiability of the distributed transmissivity field of heterogeneous groundwater aquifers. These are derived from multiple realizations of a random function Y = log T  whose probability distribution function is normal. We follow the identifiability of the autocorrelated block transmissivities through the measure of the sensitivity of the local derivatives DTh = (∂hi  ∕ ∂Tj computed for each sample of a population N (0; σY, αY. Results obtained from an analysis of Monte Carlo type suggest that the more a system is heterogeneous, the less it is identifiable.

Identifiability of PBPK Models with Applications to ...

Science.gov (United States)

Any statistical model should be identifiable in order for estimates and tests using it to be meaningful. We consider statistical analysis of physiologically-based pharmacokinetic (PBPK) models in which parameters cannot be estimated precisely from available data, and discuss different types of identifiability that occur in PBPK models and give reasons why they occur. We particularly focus on how the mathematical structure of a PBPK model and lack of appropriate data can lead to statistical models in which it is impossible to estimate at least some parameters precisely. Methods are reviewed which can determine whether a purely linear PBPK model is globally identifiable. We propose a theorem which determines when identifiability at a set of finite and specific values of the mathematical PBPK model (global discrete identifiability) implies identifiability of the statistical model. However, we are unable to establish conditions that imply global discrete identifiability, and conclude that the only safe approach to analysis of PBPK models involves Bayesian analysis with truncated priors. Finally, computational issues regarding posterior simulations of PBPK models are discussed. The methodology is very general and can be applied to numerous PBPK models which can be expressed as linear time-invariant systems. A real data set of a PBPK model for exposure to dimethyl arsinic acid (DMA(V)) is presented to illustrate the proposed methodology. We consider statistical analy

Comparative pollen preferences by africanized honeybees Apis mellifera L. of two colonies in Pará de Minas, Minas Gerais, Brazil

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Cynthia F.P. da Luz

2010-06-01

Full Text Available The aim of this study was to investigate the polliniferous floral sources used by Apis mellifera (L. (africanized in an apiary situated in Pará de Minas, Minas Gerais state, and evaluate the pollen prefences among the beehives. Two beehives of Langstroth type with frontal pollen trap collectors were used. The harvest was made from September 2007 to March 2008, with three samples of pollen pellets colected per month per beehive. The subsamples of 2 grams each were prepared according to the European standard melissopalynological method. A total of 56 pollen types were observed, identifying 43 genus and 32 families. The families that showed the major richness of pollen types were: Mimosaceae (8, Asteraceae (6, Fabaceae (3, Arecaceae (3, Euphorbiaceae (3, Rubiaceae (3, Caesalpiniaceae (2, Moraceae (2 and Myrtaceae (2. The most frequent pollen types (> 45% were Mimosa scabrella, Myrcia and Sorocea. The results demonstrated a similarity regarding the preferences of floral sources during the major part of the time. There was a distinct utilization of floral sources among the pollen types of minor frequency. In spite of the strong antropic influence, the region showed a great polliniferous variety, which was an indicative of the potential for monofloral as well as heterofloral pollen production.O objetivo deste trabalho foi conheceras fontes poliníferas utilizadas por Apis mellifera (L. (africanizadas em um apiário localizado em Pará de Minas, Minas Gerais e avaliar as preferências alimentares entre colméias. Para a pesquisa foram utilizadas duas colméias do tipo Langstroth com coletores de pólen do tipo dianteiro. As coletas foram realizadas de setembro de 2007 a marjo de 2008, perfazendo um total mensal de 3 lotes de amostras de cargas de pólen por colméia. As subamostras de 2g foram preparadas segundo o método melissopalinologico padrão europeu. Foram observados 56 tipos polínicos, reconhecendo-se 43 gêneros e 32 famílias. As fam

Identifying high-risk medication

DEFF Research Database (Denmark)

Sædder, Eva; Brock, Birgitte; Nielsen, Lars Peter

2014-01-01

salicylic acid, and beta-blockers; 30 drugs or drug classes caused 82 % of all serious MEs. The top ten drugs involved in fatal events accounted for 73 % of all drugs identified. CONCLUSION: Increasing focus on seven drugs/drug classes can potentially reduce hospitalizations, extended hospitalizations...

Internally readable identifying tag

International Nuclear Information System (INIS)

Jefferts, K.B.; Jefferts, E.R.

1980-01-01

A method of identifying non-metallic objects by means of X-ray equipment is described in detail. A small metal pin with a number of grooves cut in a pre-determined equi-spaced pattern is implanted into the non-metallic object and by decoding the groove patterns using X-ray equipment, the object is uniquely identified. A specific example of such an application is in studying the migratory habits of fish. The pin inserted into the snout of the fish is 0.010 inch in diameter, 0.040 inch in length with 8 possible positions for grooves if spaced 0.005 inch apart. With 6 of the groove positions available for data, the capacity is 2 6 or 64 combinations; clearly longer pins would increase the data capacity. This method of identification is a major advance over previous techniques which necessitated destruction of the fish in order to recover the identification tag. (UK)

Identifying glass compositions in fly ash

Directory of Open Access Journals (Sweden)

Katherine eAughenbaugh

2016-01-01

Full Text Available In this study, four Class F fly ashes were studied with a scanning electron microscope; the glassy phases were identified and their compositions quantified using point compositional analysis with k-means clustering and multispectral image analysis. The results showed that while the bulk oxide contents of the fly ashes were different, the four fly ashes had somewhat similar glassy phase compositions. Aluminosilicate glasses (AS, calcium aluminosilicate glasses (CAS, a mixed glass, and, in one case, a high iron glass were identified in the fly ashes. Quartz and iron crystalline phases were identified in each fly ash as well. The compositions of the three main glasses identified, AS, CAS, and mixed glass, were relatively similar in each ash. The amounts of each glass were varied by fly ash, with the highest calcium fly ash containing the most of calcium-containing glass. Some of the glasses were identified as intermixed in individual particles, particularly the calcium-containing glasses. Finally, the smallest particles in the fly ashes, with the most surface area available to react in alkaline solution, such as when mixed with portland cement or in alkali-activated fly ash, were not different in composition than the large particles, with each of the glasses represented. The method used in the study may be applied to a fly ash of interest for use as a cementing material in order to understand its potential for reactivity.

Structural Identifiability of Dynamic Systems Biology Models.

Science.gov (United States)

Villaverde, Alejandro F; Barreiro, Antonio; Papachristodoulou, Antonis

2016-10-01

A powerful way of gaining insight into biological systems is by creating a nonlinear differential equation model, which usually contains many unknown parameters. Such a model is called structurally identifiable if it is possible to determine the values of its parameters from measurements of the model outputs. Structural identifiability is a prerequisite for parameter estimation, and should be assessed before exploiting a model. However, this analysis is seldom performed due to the high computational cost involved in the necessary symbolic calculations, which quickly becomes prohibitive as the problem size increases. In this paper we show how to analyse the structural identifiability of a very general class of nonlinear models by extending methods originally developed for studying observability. We present results about models whose identifiability had not been previously determined, report unidentifiabilities that had not been found before, and show how to modify those unidentifiable models to make them identifiable. This method helps prevent problems caused by lack of identifiability analysis, which can compromise the success of tasks such as experiment design, parameter estimation, and model-based optimization. The procedure is called STRIKE-GOLDD (STRuctural Identifiability taKen as Extended-Generalized Observability with Lie Derivatives and Decomposition), and it is implemented in a MATLAB toolbox which is available as open source software. The broad applicability of this approach facilitates the analysis of the increasingly complex models used in systems biology and other areas.

Frugivoría y dispersión de semillas de la palma Oenocarpus bataua (Arecaceae en un bosque de los Andes colombianos Frugivory and seed dispersal Oenocarpus bataua palm (Arecaceae in a forest from the Colombian Andes

Directory of Open Access Journals (Sweden)

Rosario Rojas-Robles

2012-12-01

Full Text Available En zonas bajas tropicales, en bosques continuos y relativamente poco intervenidos, los frutos de la palma Oenocarpus bataua Mart., son consumidos por diversas especies de vertebrados, sin embargo, no hay estudios de dispersión de más largo plazo con esta especie. Entre agosto 2005-septiembre 2006 se realizaron observaciones de remoción de frutos, conteo de frutos comidos, observaciones focales, registros de frugivoría mediante trampas fotográficas, experimentos de dispersión y parcelas para determinar distribución espacial de Oenocarpus bataua. Cinco especies de mamíferos comen, dispersan, entierran (Sciurus granatensis, Microsciurus mimulus, Dasyprocta punctata y Proechimys sp., tapan (Marmosa robinsoni y llevan a las cuevas (Marmosa robinsoni y Proechimys sp., los frutos de O. bataua, sin dañar la semilla. El 21.7% de los frutos fueron dispersados, 13.2% roídos o pelados, 5.6% tapados, enterrados y llevados a cuevas. La distancia media de remoción de semillas y frutos fue 3.1m, aunque en menor proporción se registraron eventos de dispersión > a 50m. La abundante producción, el tamaño, el peso, la intensa remoción de los frutos por frugívoros, las cortas distancias de dispersión, la ausencia de frugívoros de gran porte disminuidos por cacería y fragmentación, encargados de la dispersión de larga distancia y el aumento de roedores, especialmente ardillas que presionan fuertemente el recurso frutos, generan una lluvia de semillas espacialmente restringida, posiblemente responsable de los patrones de distribución agregados en semillas, plántulas y posteriormente en juveniles y sub-adultos.Seed dispersal is a key process that determines the spatial structure and dynamics of populations of plants, establishes the potential area of recruitment and in this way, the basis for subsequent processes such as predation, germination, competition and growth. The purpose of this research was to identify the guild of frugivores of the

First record of Crypticerya zeteki (Cockerell, 1914 (Monophlebidae in Brazil and Maconellicoccus hirsutus (Green, 1908 (Pseudococcidae in the state of Maranhão

Directory of Open Access Journals (Sweden)

A. S. J. C. Ramos

2017-06-01

Full Text Available Abstract Crypticerya zeteki (Cockerell, 1914 (Hemiptera: Coccomorpha: Monophlebidae is recorded for the first time from Brazil and Maconellicoccus hirsutus (Green, 1908 (Hemiptera: Coccomorpha: Pseudococcidae is recorded for the first time from the state of Maranhão, Brazil. Both species were collected from branches, leaves and fruits of various fruit trees in the municipalities of São José de Ribamar, São Luís and Paço do Lumiar, Maranhão, Brazil. Crypticerya zeteki was collected on Citrus spp. (Rutaceae, Cocos nucifera (L. (Arecaceae, Cycas revoluta L. (Cycadaceae, Malpighia punicifolia L. (Malpighiaceae, Mangifera indica L. (Anacardiaceae, Musa paradisiaca L. (Musaceae and Theobroma grandiflorum Schum (Malvaceae, all first records for this species. Maconellicoccus hirsutus was collected on Spondias tuberosa Arruda (Anacardiaceae and M. punicifolia L. (Malpighiaceae, both new records for this species.

Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera).

Science.gov (United States)

Huang, Ya-Yi; Matzke, Antonius J M; Matzke, Marjori

2013-01-01

Coconut, a member of the palm family (Arecaceae), is one of the most economically important trees used by mankind. Despite its diverse morphology, coconut is recognized taxonomically as only a single species (Cocos nucifera L.). There are two major coconut varieties, tall and dwarf, the latter of which displays traits resulting from selection by humans. We report here the complete chloroplast (cp) genome of a dwarf coconut plant, and describe the gene content and organization, inverted repeat fluctuations, repeated sequence structure, and occurrence of RNA editing. Phylogenetic relationships of monocots were inferred based on 47 chloroplast protein-coding genes. Potential nodes for events of gene duplication and pseudogenization related to inverted repeat fluctuation were mapped onto the tree using parsimony criteria. We compare our findings with those from other palm species for which complete cp genome sequences are available.

Crop Management Practices in the Humid Hills from Northeastern Brazil between 670-530 Yrs BP: Palynological Evidences from Archaeological Site Evaristo I

Directory of Open Access Journals (Sweden)

Aline Gonçalves Freitas

2015-12-01

Full Text Available The first cultural traces of ancient pottery towns in the Serra de Baturité are presented. The pollen spectrum of sediments reveals a mosaic of moist mountainous vegetation, xerophytes, annual nitrophilous, hygrophilous and bog plants. Useful pollen recovered from ceramic, such as cassava (Manihot type, sweet potatoes (Ipomoea type, cotton (Gossypium type, palm trees and fruitful (Arecaceae, cf. Astronium and Anacardium type, together with pathogenic microfungi corn, cotton and some tubers (Curvularia type, Alternaria, Puccinia type and cf. Ustilago maydis indicate agricultural and livelihood activities. The coprophilous fungi of humans and other animals (Cercophora type Gelasinospora type and Sordariaceae reflect the time spent by these groups in the archaeological area. The Gelasinospora fungus also shows the use of fire as fuel for agricultural practices and hunting. These data demonstrate the use of ceramics in funerary and domestic contexts.

Identifying phenomenal consciousness.

Science.gov (United States)

Schier, Elizabeth

2009-03-01

This paper examines the possibility of finding evidence that phenomenal consciousness is independent of access. The suggestion reviewed is that we should look for isomorphisms between phenomenal and neural activation spaces. It is argued that the fact that phenomenal spaces are mapped via verbal report is no problem for this methodology. The fact that activation and phenomenal space are mapped via different means does not mean that they cannot be identified. The paper finishes by examining how data addressing this theoretical question could be obtained.

Target and identify: triazene linker helps identify azidation sites of labelled proteins via click and cleave strategy.

Science.gov (United States)

Lohse, Jonas; Schindl, Alexandra; Danda, Natasha; Williams, Chris P; Kramer, Karl; Kuster, Bernhard; Witte, Martin D; Médard, Guillaume

2017-10-31

A method for identifying probe modification of proteins via tandem mass spectrometry was developed. Azide bearing molecules are immobilized on functionalised sepharose beads via copper catalysed Huisgen-type click chemistry and selectively released under acidic conditions by chemical cleavage of the triazene linkage. We applied this method to identify the modification site of targeted-diazotransfer on BirA.

Distributed design approach in persistent identifiers systems

Science.gov (United States)

Golodoniuc, Pavel; Car, Nicholas; Klump, Jens

2017-04-01

The need to identify both digital and physical objects is ubiquitous in our society. Past and present persistent identifier (PID) systems, of which there is a great variety in terms of technical and social implementations, have evolved with the advent of the Internet, which has allowed for globally unique and globally resolvable identifiers. PID systems have catered for identifier uniqueness, integrity, persistence, and trustworthiness, regardless of the identifier's application domain, the scope of which has expanded significantly in the past two decades. Since many PID systems have been largely conceived and developed by small communities, or even a single organisation, they have faced challenges in gaining widespread adoption and, most importantly, the ability to survive change of technology. This has left a legacy of identifiers that still exist and are being used but which have lost their resolution service. We believe that one of the causes of once successful PID systems fading is their reliance on a centralised technical infrastructure or a governing authority. Golodoniuc et al. (2016) proposed an approach to the development of PID systems that combines the use of (a) the Handle system, as a distributed system for the registration and first-degree resolution of persistent identifiers, and (b) the PID Service (Golodoniuc et al., 2015), to enable fine-grained resolution to different information object representations. The proposed approach solved the problem of guaranteed first-degree resolution of identifiers, but left fine-grained resolution and information delivery under the control of a single authoritative source, posing risk to the long-term availability of information resources. Herein, we develop these approaches further and explore the potential of large-scale decentralisation at all levels: (i) persistent identifiers and information resources registration; (ii) identifier resolution; and (iii) data delivery. To achieve large-scale decentralisation

Identifying and Managing Risk.

Science.gov (United States)

Abraham, Janice M.

1999-01-01

The role of the college or university chief financial officer in institutional risk management is (1) to identify risk (physical, casualty, fiscal, business, reputational, workplace safety, legal liability, employment practices, general liability), (2) to develop a campus plan to reduce and control risk, (3) to transfer risk, and (4) to track and…

Exploiting intrinsic fluctuations to identify model parameters.

Science.gov (United States)

Zimmer, Christoph; Sahle, Sven; Pahle, Jürgen

2015-04-01

Parameterisation of kinetic models plays a central role in computational systems biology. Besides the lack of experimental data of high enough quality, some of the biggest challenges here are identification issues. Model parameters can be structurally non-identifiable because of functional relationships. Noise in measured data is usually considered to be a nuisance for parameter estimation. However, it turns out that intrinsic fluctuations in particle numbers can make parameters identifiable that were previously non-identifiable. The authors present a method to identify model parameters that are structurally non-identifiable in a deterministic framework. The method takes time course recordings of biochemical systems in steady state or transient state as input. Often a functional relationship between parameters presents itself by a one-dimensional manifold in parameter space containing parameter sets of optimal goodness. Although the system's behaviour cannot be distinguished on this manifold in a deterministic framework it might be distinguishable in a stochastic modelling framework. Their method exploits this by using an objective function that includes a measure for fluctuations in particle numbers. They show on three example models, immigration-death, gene expression and Epo-EpoReceptor interaction, that this resolves the non-identifiability even in the case of measurement noise with known amplitude. The method is applied to partially observed recordings of biochemical systems with measurement noise. It is simple to implement and it is usually very fast to compute. This optimisation can be realised in a classical or Bayesian fashion.

IDENTIFYING COLLISIONAL FAMILIES IN THE KUIPER BELT

International Nuclear Information System (INIS)

Marcus, Robert A.; Ragozzine, Darin; Murray-Clay, Ruth A.; Holman, Matthew J.

2011-01-01

The identification and characterization of numerous collisional families-clusters of bodies with a common collisional origin-in the asteroid belt has added greatly to the understanding of asteroid belt formation and evolution. More recent study has also led to an appreciation of physical processes that had previously been neglected (e.g., the Yarkovsky effect). Collisions have certainly played an important role in the evolution of the Kuiper Belt as well, though only one collisional family has been identified in that region to date, around the dwarf planet Haumea. In this paper, we combine insights into collisional families from numerical simulations with the current observational constraints on the dynamical structure of the Kuiper Belt to investigate the ideal sizes and locations for identifying collisional families. We find that larger progenitors (r ∼ 500 km) result in more easily identifiable families, given the difficulty in identifying fragments of smaller progenitors in magnitude-limited surveys, despite their larger spread and less frequent occurrence. However, even these families do not stand out well from the background. Identifying families as statistical overdensities is much easier than characterizing families by distinguishing individual members from interlopers. Such identification seems promising, provided the background population is well known. In either case, families will also be much easier to study where the background population is small, i.e., at high inclinations. Overall, our results indicate that entirely different techniques for identifying families will be needed for the Kuiper Belt, and we provide some suggestions.

Patient-Identified Priorities Leading to Attempted Suicide.

Science.gov (United States)

Stulz, Niklaus; Hepp, Urs; Gosoniu, Dominic G; Grize, Leticia; Muheim, Flavio; Weiss, Mitchell G; Riecher-Rössler, Anita

2018-01-01

Attempted suicide is a major public health problem. The aim of this study was to identify patient-identified problems and triggers typically leading to attempted suicide. A representative sample of 66 adult patients was recruited from all clinical sites and psychiatrists who treat patients after attempted suicide in the Canton of Basel-City (Switzerland). Patients were diagnosed using the Structured Clinical Interview for DSM-IV (SCID) and interviewed with a local adaptation of the Explanatory Model Interview Catalogue (EMIC) to study underlying problems and triggers of attempted suicide. Of the patients, 92.4% had at least one DSM-IV disorder, with depressive disorders being the most prevalent disorder. Although half (50.0%) of the patients identified a health problem, 71.2% identified an interpersonal conflict as underlying problem leading to the suicide attempt. Furthermore, an interpersonal conflict was identified as the trigger of the suicide attempt by more than half of the patients (54.5%). The study included German-speaking patients only. According to patients, interpersonal problems often amplify underlying psychiatric problems, leading to suicide attempts. Social and interpersonal stressors should be acknowledged with integrated clinical and social interventions to prevent suicidal behavior in patients and populations.

Conservation genetics of the critically endangered Round Island bottle palm, Hyophorbe lagenicaulis (Arecaceae)

DEFF Research Database (Denmark)

Lange, Conny Bruun Asmussen; Maunder, Michael; Fay, Michael F.

2011-01-01

The amplified fragment length polymorphism (AFLP) technique was used to examine genetic variation among old and newly emerged individuals of Hyophorbe lagenicaulis (the Round Island bottle palm) on Round Island to assess surviving levels of diversity in the wild population and to evaluate...... monomorphic bands. Analysis of molecular variance (AMOVA) and Shannon’s indices showed a high level of genetic variation within the wild population on Round Island and a smaller amount of genetic variation among cultivated individuals. A neighbor joining analysis resulted in an unrooted network of genetic...... distances in which the five Hyophorbe spp. were separated and much variation within H. lagenicaulis was recovered. The Round Island populations of H. lagenicaulis contain representatives of the genetic variation found within the species as a whole. However, a few individuals, both wild and cultivated...

In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae).

Science.gov (United States)

Angelo, Paula Cristina da Silva; Moraes, Larissa Alexandra Cardoso; Lopes, Ricardo; Sousa, Nelcimar Reis; da Cunha, Raimundo Nonato Vieira; Quisen, Regina Caetano

2011-09-01

The African oil palm (Elaeis guineensis) is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the "lethal yellowing". Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera), a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p < or = 0.05). Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM) of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. In conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development.

In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae

Directory of Open Access Journals (Sweden)

Paula Cristina da Silva Angelo

2011-09-01

Full Text Available The African oil palm (Elaeis guineensis is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the “lethal yellowing”. Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera, a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p≤0.05. Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. in conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development. Rev. Biol. Trop. 59 (3: 1081-1088. Epub 2011 September 01.

In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae

Directory of Open Access Journals (Sweden)

Paula Cristina da Silva Angelo

2011-09-01

Full Text Available The African oil palm (Elaeis guineensis is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the “lethal yellowing”. Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera, a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p≤0.05. Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. in conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development. Rev. Biol. Trop. 59 (3: 1081-1088. Epub 2011 September 01.Elaeis guineensis es el productor de aceite más eficaz en toneladas por hectárea, su cultivo, cada vez mayor en América Latina, se ha visto perjudicado por el “amarilleamiento letal”. La resistencia genética a esta anomalía se puede encontrar en el germoplasma de la palma aceitera americana o caiaué (E. oleifera, una especie nativa de la selva amazónica. Sin embargo, los procedimientos adoptados para inducir la germinación de las semillas de E. guineensis frecuentemente produce resultados modestos para híbridos interespecíficos. El cultivo de embriones in vitro puede ser una opción viable. En este trabajo se probó el medio líquido MS complementado con diferentes concentraciones de glucosa o sacarosa en el cultivo in vitro de embriones cigóticos de E. guineensis x E. oleifera originados de polinización controlada. Además se investigaron diferentes mezclas de compost para aclimatar los híbridos regenerados. Las concentraciones de 10, 20 y 30 g/L de ambos azúcares se probaron en frascos que contenían cinco embriones cigóticos maduros, con 15 repeticiones por tratamiento y un total de 450 explantes. El número de embriones que muestran brotes y radículas de al menos 2mm de longitud por unidad experimental se evaluó durante la primera fase de cultivo in vitro. Las plántulas que mostraron brotes y radículas fueron trasladadas a la segunda fase de cultivo in vitro y, posteriormente, se aclimataron, por debajo de 70% de sombra con el suministro manual de agua. Los experimentos de aclimatación se llevaron a cabo con 130 plántulas distribuidas al azar en el compost hortícola puro, compost 3:1 o 1:1: mezclas de arena y cada plántula se definió como una unidad experimental. Los datos fueron sometidos a un análisis de varianza, prueba t y análisis de correlación (p≤0.05. Las tasas más altas de emergencia fueron 97% y 73% para brotes y radículas respectivamente, en el medio MS complementado con 20g/L (110mM de glucosa. Este azúcar en concentraciones de 20 o 30g/L permitió un desarrollo balanceado de brotes/desarrollo de raíces, que fue considerado como una de las razones de la alta frecuencia de establecimiento de las plántulas. El porcentaje de supervivencia fue de un 55% después de los primeros 43 días de aclimatación y por el cuarto mes, 66 plantas desarrollaron simultáneamente hojas largas y un sistema radical en el compost hortícola puro. En conclusión, el desarrollo radicular fue un impedimento para el establecimiento de plántulas y se superó en el medio con glucosa por encima de 110mM. La aclimatación podría beneficiarse con un largo período de desarrollo in vitro.

Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression

DEFF Research Database (Denmark)

Eiserhardt, Wolf L.; Bjorholm, Stine; Svenning, J.-C.

2011-01-01

Water and energy have emerged as the best contemporary environmental correlates of broad-scale species richness patterns. A corollary hypothesis of water–energy dynamics theory is that the influence of water decreases and the influence of energy increases with absolute latitude. We report the fir...

Chemical constituents from roots and leaf stalks of acai (Euterpe precatoria Mart., Arecaceae)

International Nuclear Information System (INIS)

Galotta, Ana Lucia Queiroz de Assis; Boaventura, Maria Amelia Diamantino

2005-01-01

Phytochemical investigation of the hexane, ethyl acetate and methanolic extracts of roots and leaf stalks of Euterpe precatoria Mart. (acai), afforded stigmast-4-en-6β-ol-3-one (3); p-hydroxy benzoic acid (4); 3β-O-D-glucopyranosyl-sitosterol (5); β-sitosterol palmitate (6); mixtures of β-sitosterol and stigmasterol (1 and 2), α-, β-amyrin and lupeol (7, 8 and 9), friedelin-3-one and 28-hydroxy-friedelin-3-one (10 and 11) and α-, β-D-glucose (12, 13). Except for 1, 2 and 4, the other isolated constituents are described in the genus for the first time. Compounds 3 and 5 gave good results in the brine shrimp bioassay, which detects compounds with potential uses as antitumor agents, pesticides, etc.. (author)

ORCID: Author Identifiers for Librarians

Directory of Open Access Journals (Sweden)

Robyn B. Reed

2017-10-01

Full Text Available Generating accurate publication lists by researchers can be challenging when faced with scholars who have common names or who have published under name variations. This article describes ORCID and the goal of generating author identifiers for scholars to connect their research outputs. Included are the reasons for having author identifiers as well as the types of information within individual profiles. This article includes information on how academic libraries are playing a role with ORCID initiatives as well as describing how publishers, institutions, and funders are employing ORCID in their workflows. Highlighted is material on academic institutions in Pennsylvania using ORCID. The purpose of the article is to provide an overview of ORCID and its uses to inform librarians about this important initiative.

Diet of Procyon cancrivorus (Carnivora, Procyonidae in restinga and estuarine environments of southern Brazil

Directory of Open Access Journals (Sweden)

Fernando M. Quintela

2014-06-01

Full Text Available Despite its wide range and abundance on certain habitats, the crab-eating raccoon Procyon cancrivorus (G. Cuvier, 1798 is considered one of the less known Neotropical carnivore species. In the present study we analyzed the diet of P. cancrivorus in a peat forest and in an estuarine island in southernmost Brazil. Fruits of the gerivá palm tree Syagrus romanzoffiana were the most consumed item in the peat forest, followed by insects and mollusks. Small mammals, followed by Bromelia antiacantha (Bromeliaceae fruits and brachyuran crustaceans were the most frequent items in the estuarine island. Other items found in lower frequencies were Solanum sp., Psidium sp., Smilax sp. and Dyospiros sp. fruits, diplopods, scorpions, fishes, anuran amphibians, reptiles (black tegu lizard and snakes, birds and medium-sized mammals (white-eared opossum, armadillo and coypu. Levin’s index values (peat forest: 0.38; estuarine island: 0.45 indicate an approximation to a median position between a specialist and a well distributed diet. Pianka’s index (0.80 showed a considerable diet similarity between the two systems. Procyon cancrivorus presented a varied diet in the studied areas and may play an important role as seed disperser on coastal environments in southernmost Brazil.

Scientometric methods for identifying emerging technologies

Science.gov (United States)

Abercrombie, Robert K; Schlicher, Bob G; Sheldon, Frederick T

2015-11-03

Provided is a method of generating a scientometric model that tracks the emergence of an identified technology from initial discovery (via original scientific and conference literature), through critical discoveries (via original scientific, conference literature and patents), transitioning through Technology Readiness Levels (TRLs) and ultimately on to commercial application. During the period of innovation and technology transfer, the impact of scholarly works, patents and on-line web news sources are identified. As trends develop, currency of citations, collaboration indicators, and on-line news patterns are identified. The combinations of four distinct and separate searchable on-line networked sources (i.e., scholarly publications and citation, worldwide patents, news archives, and on-line mapping networks) are assembled to become one collective network (a dataset for analysis of relations). This established network becomes the basis from which to quickly analyze the temporal flow of activity (searchable events) for the example subject domain.

A study on the re-identifiability of Dutch citizens

OpenAIRE

Koot, M.R.; van 't Noordende, G.; de Laat, C.; Serjantov, A.; Troncoso, C.

2010-01-01

This paper analyses the re-identifiability of Dutch citizens by various demographics. Our analysis is based on registry office data of 2.7 million Dutch citizens, ~16% of the total population. We provide overall statistics on re-identifiability for a range of quasi-identifiers, and present an in-depth analysis of quasi-identifiers found in two de-identified data sets. We found that 67.0% of the sampled population is unambiguously identifiable by date of birth and four-digit postal code alone,...

Loneliness, immigration background and self-identified ethnicity

DEFF Research Database (Denmark)

Madsen, Katrine Rich; Damsgaard, Mogens Trab; Jervelund, Signe Smith

2016-01-01

an increased risk of loneliness compared to adolescents with a Danish origin. The results also suggest that adolescents’ self-identified ethnicity plays an essential role but differently for immigrants and descendants: identifying with the Danish majority was protective against loneliness among immigrants...

30 CFR 47.21 - Identifying hazardous chemicals.

Science.gov (United States)

2010-07-01

..., subpart Z, Toxic and Hazardous Substances. (4) American Conference of Governmental Industrial Hygienists... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Identifying hazardous chemicals. 47.21 Section... TRAINING HAZARD COMMUNICATION (HazCom) Hazard Determination § 47.21 Identifying hazardous chemicals. The...

Rock disposal problems identified

Energy Technology Data Exchange (ETDEWEB)

Knox, R

1978-06-01

Mathematical models are the only way of examining the return of radioactivity from nuclear waste to the environment over long periods of time. Work in Britain has helped identify areas where more basic data is required, but initial results look very promising for final disposal of high level waste in hard rock repositories. A report by the National Radiological Protection Board of a recent study, is examined.

Water resources management in Tanzania: identifying research ...

African Journals Online (AJOL)

This paper aims at identifying research gaps and needs and recommendations for a research agenda on water resources management in Tanzania. We reviewed published literature on water resources management in Tanzania in order to highlight what is currently known, and to identify knowledge gaps, and suggest ...

Teknik Pembengkokan Rotan Manau (Calamus manau Menggunakan Steamer

Directory of Open Access Journals (Sweden)

Eustasia Sri Murwati

2016-04-01

Full Text Available ABSTRAKIndonesia merupakan penghasil rotan terbesar di dunia, mampu memasok 80% dari kebutuhan rotan dunia. Rotan adalah tanaman yang termasuk suku Palmae atau Arecaceae. Rotan yang dipergunakan untuk kontruksi mebel antara lain dari genus/marga Calamaus. Spesies Calamus Manau. Rotan yang dibuat untuk bahan mebel dapat dibengkokkan menurut desain tertentu dengan memasukkannya ke dalam steamer. Di dalam steamer tersebut rotan dikukus/diuapi dengan uap basah agar jaringan rotan menjadi lunak sehingga mudah dibengkokkan. Penelitian dilakukan di Balai Besar Kerajinan dan Batik Yogyakarta dengan variabel penampang lintang (Ø rotan 2,4 cm, 2,8cm, dan 3,2 cm, waktu pengukusan rotan 5 menit, 10 menit dan 15 menit, suhu ketel uap dan tabung steamer 110o C, serta tekanan maksimum 2 bar (kg/cm2. Adapun bentuk kelengkungan yang dilakukan adalah bentuk U, bentuk setengah lingkaran, bentuk omega, dan bentuk spiral. Hasil pembengkokan yang paling baik pada waktu pengukusan rotan selama 15 menit untuk keempat bentuk pembengkokan dan ketiga variabel penampang lintang rotan. Rotan tidak pecah, tidak retak maupun tidak gembos.Kata kunci: mebel, pembengkok, rotan, steamerABSTRACTIndonesia is the biggest rattan producer in the world, capable to supply 80 % of world’s rattan needs. Rattan is a species of  Palmae or Arecaceae family. Rattan that is mostly used for furnitures is of genus Calamus, species Calamus manau. Rattan furniture materials can be bent into specific design by putting them into the steamer. In the steamer, rattan is steamed using wet steam so the tissues become soft and easy to bent. The research experiment is conducted at the Center for Craft and Batik Yogyakarta with variables: 2,4 cm, 2,8 cm and 3,2 cm of rattan cross section diameter, 5 minutes, 10 minutes and 15 minutes of steaming time, 110o C of boiler and steamer temperatures, and 2 bar (kg/cm2 of maximum pressures. The experimented curve shapes are U-shape, semi-circular shape, omega

Identifying genetic relatives without compromising privacy.

Science.gov (United States)

He, Dan; Furlotte, Nicholas A; Hormozdiari, Farhad; Joo, Jong Wha J; Wadia, Akshay; Ostrovsky, Rafail; Sahai, Amit; Eskin, Eleazar

2014-04-01

The development of high-throughput genomic technologies has impacted many areas of genetic research. While many applications of these technologies focus on the discovery of genes involved in disease from population samples, applications of genomic technologies to an individual's genome or personal genomics have recently gained much interest. One such application is the identification of relatives from genetic data. In this application, genetic information from a set of individuals is collected in a database, and each pair of individuals is compared in order to identify genetic relatives. An inherent issue that arises in the identification of relatives is privacy. In this article, we propose a method for identifying genetic relatives without compromising privacy by taking advantage of novel cryptographic techniques customized for secure and private comparison of genetic information. We demonstrate the utility of these techniques by allowing a pair of individuals to discover whether or not they are related without compromising their genetic information or revealing it to a third party. The idea is that individuals only share enough special-purpose cryptographically protected information with each other to identify whether or not they are relatives, but not enough to expose any information about their genomes. We show in HapMap and 1000 Genomes data that our method can recover first- and second-order genetic relationships and, through simulations, show that our method can identify relationships as distant as third cousins while preserving privacy.

Identifying Opinion Leaders to Promote Behavior Change

Science.gov (United States)

Valente, Thomas W.; Pumpuang, Patchareeya

2007-01-01

This article reviews 10 techniques used to identify opinion leaders to promote behavior change. Opinion leaders can act as gatekeepers for interventions, help change social norms, and accelerate behavior change. Few studies document the manner in which opinion leaders are identified, recruited, and trained to promote health. The authors categorize…

Leading change: 1--identifying the issue.

Science.gov (United States)

Kerridge, Joanna

To enable sustainable change, nurses need to take the lead in managing it. Recent national initiatives have emphasised the importance of frontline staff in service improvement. The ability to influence and manage change has been identified as an essential skill for delivering new models of care. This article is the first in a three-part series designed to help nurses at all levels develop the knowledge and skills they will need to initiate and manage change. This article focuses on identifying what needs to be changed and why.

IDENTIFYING DEMENTIA IN ELDERLY POPULATION : A CAMP APPROACH

Directory of Open Access Journals (Sweden)

Anand P

2015-06-01

Full Text Available BACKGROUND: Dementia is an emerging medico social problem affecting elderly, and poses a challenge to clinician and caregivers. It is usually identified in late stage where management becomes difficult. AIM: The aim of camp was to identify dementia in elderly population participating in screening camp. MATERIAL AND METHODS : The geriatric clinic and department of psychiatry jointly organised screening camp to detect dementia in elderly for five days in September 2014 to commemorate world Alzheimer’s day. The invitation regarding camp was sent to all senio r citizen forums and also published in leading Kannada daily newspaper. Mini Mental Status Examination and Diagnostic and Statistical Manual of Mental Disorders, 4 th edition criteria (DSM IV was used to identify dementia. RESULTS: Elderly male participate d in camp in more number than females and dementia was identified in 36% elderly with education less than 9 th standard. Dementia was found in 18% in our study population. CONCLUSION: The camp help identify elderly suffering from dementia and also created a wareness about it. Hypertension and diabetes mellitus were common co morbidity in study population. Our study suggested organising screening camp will help identify elderly living with dementia.

Temporal Dynamics and Resource Availability for Drosophilid Fruit Flies (Insecta, Diptera in a Gallery Forest in the Brazilian Savanna

Directory of Open Access Journals (Sweden)

Henrique Valadão

2010-01-01

Full Text Available Seasonality can cause severe bottlenecks in natural populations, even leading to local extinction. Large variation in resource availability may explain the bottlenecks, but the role of these variations is still poorly understood. The goal of this study was to analyze if temporal variations in the guild of drosophilids breeding in fruits of Mauritia flexuosa (Arecaceae can be explained by the shortage of this resource during the dry season. Fruits of M. flexuosa were collected over one year in a gallery forest located in the Central Brazilian Savanna. The drosophilid assemblage varied over time, with a lower density of species and of individuals in the dry season, when the percentage of colonized fruits was also smaller. These findings suggest that although the fruits were available during the dry season, they were underused. This way, the resource availability does not seem to regulate the community in the dry season.

Temporal Dynamics and Resource Availability for Drosophilid Fruit Flies (Insect, Diptera) in a Gallery Forest in the Brazilian Savanna

International Nuclear Information System (INIS)

Valadao, H.; Du Vall Hay, J.; Tidon, R.

2010-01-01

Seasonality can cause severe bottlenecks in natural populations, even leading to local extinction. Large variation in resource availability may explain the bottlenecks, but the role of these variations is still poorly understood. The goal of this study was to analyze if temporal variations in the guild of drosophilids breeding in fruits of Mauritia flexuosa (Arecaceae) can be explained by the shortage of this resource during the dry season. Fruits of M. flexuosa were collected over one year in a gallery forest located in the Central Brazilian Savanna. The drosophilid assemblage varied over time, with a lower density of species and of individuals in the dry season, when the percentage of colonized fruits was also smaller. These findings suggest that although the fruits were available during the dry season, they were under used. This way, the resource availability does not seem to regulate the community in the dry season.

Floristic and phytosociology in dense "terra firme" rainforest in the Belo Monte Hydroelectric Plant influence area, Pará, Brazil.

Science.gov (United States)

Lemos, D A N; Ferreira, B G A; Siqueira, J D P; Oliveira, M M; Ferreira, A M

2015-08-01

The objective of the present study was to characterise the floristic and phytosociological composition on a stretch of dense "Terra Firme" rainforest located in the Belo Monte hydroelectric plant area of influence, located in the state of Pará, Brazil. All trees with DAP >10 cm situated in 75 permanent plots of 1 ha were inventoried. 27,126 individuals trees (361 ind.ha-1), distributed in 59 botanical families, comprising 481 species were observed. The families with the largest number of species were Fabaceae (94), Araceae (65) and Arecaceae (43), comprising 43.7% of total species. The species Alexa grandiflora (4.41), Cenostigma tocantinum (2.50) and Bertholletia excelsa (2.28) showed the highest importance values (IV). The ten species with greater IV are concentrated (22%). The forest community has high species richness and can be classified as diverse age trees, heterogeneous and of medium conservation condition.

Identifiability Results for Several Classes of Linear Compartment Models.

Science.gov (United States)

Meshkat, Nicolette; Sullivant, Seth; Eisenberg, Marisa

2015-08-01

Identifiability concerns finding which unknown parameters of a model can be estimated, uniquely or otherwise, from given input-output data. If some subset of the parameters of a model cannot be determined given input-output data, then we say the model is unidentifiable. In this work, we study linear compartment models, which are a class of biological models commonly used in pharmacokinetics, physiology, and ecology. In past work, we used commutative algebra and graph theory to identify a class of linear compartment models that we call identifiable cycle models, which are unidentifiable but have the simplest possible identifiable functions (so-called monomial cycles). Here we show how to modify identifiable cycle models by adding inputs, adding outputs, or removing leaks, in such a way that we obtain an identifiable model. We also prove a constructive result on how to combine identifiable models, each corresponding to strongly connected graphs, into a larger identifiable model. We apply these theoretical results to several real-world biological models from physiology, cell biology, and ecology.

SNP interaction pattern identifier (SIPI)

DEFF Research Database (Denmark)

Lin, Hui Yi; Chen, Dung Tsa; Huang, Po Yu

2017-01-01

Motivation: Testing SNP-SNP interactions is considered as a key for overcoming bottlenecks of genetic association studies. However, related statistical methods for testing SNP-SNP interactions are underdeveloped. Results: We propose the SNP Interaction Pattern Identifier (SIPI), which tests 45...

Identifying Breast Cancer Oncogenes

Science.gov (United States)

2010-10-01

tyrosine kinases with an SH3, SH2 and catalytic domain, it lacks a native myristylation signal shared by most members of this class [14], [38]. The...therapeutics and consequently, improve clinical outcomes. We aim to identify novel drivers of breast oncogenesis. We hypothesize that a kinase gain-of...human mammary epithelial cells. A pBabe-Puro-Myr-Flag kinase open reading frame (ORF) library was screened in immortalized human mammary epithelial

Identifying mechanistic similarities in drug responses

KAUST Repository

Zhao, C.

2012-05-15

Motivation: In early drug development, it would be beneficial to be able to identify those dynamic patterns of gene response that indicate that drugs targeting a particular gene will be likely or not to elicit the desired response. One approach would be to quantitate the degree of similarity between the responses that cells show when exposed to drugs, so that consistencies in the regulation of cellular response processes that produce success or failure can be more readily identified.Results: We track drug response using fluorescent proteins as transcription activity reporters. Our basic assumption is that drugs inducing very similar alteration in transcriptional regulation will produce similar temporal trajectories on many of the reporter proteins and hence be identified as having similarities in their mechanisms of action (MOA). The main body of this work is devoted to characterizing similarity in temporal trajectories/signals. To do so, we must first identify the key points that determine mechanistic similarity between two drug responses. Directly comparing points on the two signals is unrealistic, as it cannot handle delays and speed variations on the time axis. Hence, to capture the similarities between reporter responses, we develop an alignment algorithm that is robust to noise, time delays and is able to find all the contiguous parts of signals centered about a core alignment (reflecting a core mechanism in drug response). Applying the proposed algorithm to a range of real drug experiments shows that the result agrees well with the prior drug MOA knowledge. © The Author 2012. Published by Oxford University Press. All rights reserved.

Identifying patient risks during hospitalization

Directory of Open Access Journals (Sweden)

Lucélia Ferreira Lima

2008-12-01

Full Text Available Objective: To identify the risks reported at a public institution andto know the main patient risks from the nursing staff point of view.Methods: A retrospective, descriptive and exploratory study. Thesurvey was developed at a hospital in the city of Taboão da Serra, SãoPaulo, Brazil. The study included all nurses working in care areas whoagreed to participate in the study. At the same time, sentinel eventsoccurring in the period from July 2006 to July 2007 were identified.Results: There were 440 sentinel events reported, and the main risksincluded patient falls, medication errors and pressure ulcers. Sixty-fivenurses were interviewed. They also reported patient falls, medicationerrors and pressure ulcers as the main risks. Conclusions: Riskassessment and implementation of effective preventive actions arenecessary to ensure patient’s safety. Involvement of a multidisciplinaryteam is one of the steps for a successful process.

Structural parameter identifiability analysis for dynamic reaction networks

DEFF Research Database (Denmark)

Davidescu, Florin Paul; Jørgensen, Sten Bay

2008-01-01

method based on Lie derivatives. The proposed systematic two phase methodology is illustrated on a mass action based model for an enzymatically catalyzed reaction pathway network where only a limited set of variables is measured. The methodology clearly pinpoints the structurally identifiable parameters...... where for a given set of measured variables it is desirable to investigate which parameters may be estimated prior to spending computational effort on the actual estimation. This contribution addresses the structural parameter identifiability problem for the typical case of reaction network models....... The proposed analysis is performed in two phases. The first phase determines the structurally identifiable reaction rates based on reaction network stoichiometry. The second phase assesses the structural parameter identifiability of the specific kinetic rate expressions using a generating series expansion...

Identifying Topics in Microblogs Using Wikipedia.

Science.gov (United States)

Yıldırım, Ahmet; Üsküdarlı, Suzan; Özgür, Arzucan

2016-01-01

Twitter is an extremely high volume platform for user generated contributions regarding any topic. The wealth of content created at real-time in massive quantities calls for automated approaches to identify the topics of the contributions. Such topics can be utilized in numerous ways, such as public opinion mining, marketing, entertainment, and disaster management. Towards this end, approaches to relate single or partial posts to knowledge base items have been proposed. However, in microblogging systems like Twitter, topics emerge from the culmination of a large number of contributions. Therefore, identifying topics based on collections of posts, where individual posts contribute to some aspect of the greater topic is necessary. Models, such as Latent Dirichlet Allocation (LDA), propose algorithms for relating collections of posts to sets of keywords that represent underlying topics. In these approaches, figuring out what the specific topic(s) the keyword sets represent remains as a separate task. Another issue in topic detection is the scope, which is often limited to specific domain, such as health. This work proposes an approach for identifying domain-independent specific topics related to sets of posts. In this approach, individual posts are processed and then aggregated to identify key tokens, which are then mapped to specific topics. Wikipedia article titles are selected to represent topics, since they are up to date, user-generated, sophisticated articles that span topics of human interest. This paper describes the proposed approach, a prototype implementation, and a case study based on data gathered during the heavily contributed periods corresponding to the four US election debates in 2012. The manually evaluated results (0.96 precision) and other observations from the study are discussed in detail.

Device for identifying fuel assembly

International Nuclear Information System (INIS)

Imai, Tetsuo; Miyazawa, Tatsuo.

1982-01-01

Purpose: To accurately identify a symbol printed on a hanging tool at the upper part of a fuel assembly. Constitution: Optical fibers are bundled to prepare a detector which is disposed at a predetermined position on a hanging tool. This position is set by a guide. Thus, the light emitted from an illumination lamp arrives at the bottom of a groove printed on the upper surface of the tool, and is divided into a weak light reflected upwardly and a strong light reflected on the surface lower than the groove. When these lights are received by the optical fibers, the fibers corresponding to the grooved position become dark, and the fibers corresponding to the ungrooved position become bright. Since the fuel assembly is identified by the dark and bright of the optical fibers as symbols, different machining can be performed every fuel assembly on the upper surface of the tool. (Yoshihara, H.)

An Xpert screen to identify carbapenemases

Directory of Open Access Journals (Sweden)

Mubin Kazi

2016-01-01

Full Text Available To prevent the spread of carbapenemases-producing Enterobacteriaceae (CPE active surveillance, contact isolation and cohorting infected patients should be practiced. Rectal swabs for the Xpert MDRO-assay of 32 patients were included. 71.85% were positive for targets incorporated into the MDRO-assay; whereas 28% were phenotypically not CRE and Xpert negative (9.37% had different mechanism [bla OXA]. The assay identified 59.3%, 9.37% and 3.1% as bla NDM, bla NDM+VIM and bla VIM, respectively. The assay is a screening test that identifies CPE harbouring organism within an hour and can be installed at tertiary-care facilities to screen colonized patients.

Identifying the Gifted Child Humorist.

Science.gov (United States)

Fern, Tami L.

1991-01-01

This study attempted to identify gifted child humorists among 1,204 children in grades 3-6. Final identification of 13 gifted child humorists was determined through application of such criteria as funniness, originality, and exemplary performance or product. The influence of intelligence, development, social factors, sex differences, family…

Decision Level Fusion of Fingerprint Minutiae Based Pseudonymous Identifiers

NARCIS (Netherlands)

Yang, Bian; Busch, Christoph; de Groot, Koen; Xu, H.; Veldhuis, Raymond N.J.

2011-01-01

In a biometric template protected authentication system, a pseudonymous identifier is the part of a protected biometric template that can be compared directly against other pseudonymous identifiers. Each compared pair of pseudonymous identifiers results in a verification decision testing whether

Identifying Adverse Drug Events by Relational Learning.

Science.gov (United States)

Page, David; Costa, Vítor Santos; Natarajan, Sriraam; Barnard, Aubrey; Peissig, Peggy; Caldwell, Michael

2012-07-01

The pharmaceutical industry, consumer protection groups, users of medications and government oversight agencies are all strongly interested in identifying adverse reactions to drugs. While a clinical trial of a drug may use only a thousand patients, once a drug is released on the market it may be taken by millions of patients. As a result, in many cases adverse drug events (ADEs) are observed in the broader population that were not identified during clinical trials. Therefore, there is a need for continued, post-marketing surveillance of drugs to identify previously-unanticipated ADEs. This paper casts this problem as a reverse machine learning task , related to relational subgroup discovery and provides an initial evaluation of this approach based on experiments with an actual EMR/EHR and known adverse drug events.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

Science.gov (United States)

McMurry, Julie A; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; Courtot, Mélanie; Deck, John; Dumontier, Michel; Fellows, Donal K; Gonzalez-Beltran, Alejandra; Gormanns, Philipp; Grethe, Jeffrey; Hastings, Janna; Hériché, Jean-Karim; Hermjakob, Henning; Ison, Jon C; Jimenez, Rafael C; Jupp, Simon; Kunze, John; Laibe, Camille; Le Novère, Nicolas; Malone, James; Martin, Maria Jesus; McEntyre, Johanna R; Morris, Chris; Muilu, Juha; Müller, Wolfgang; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sariyar, Murat; Snoep, Jacky L; Soiland-Reyes, Stian; Stanford, Natalie J; Swainston, Neil; Washington, Nicole; Williams, Alan R; Wimalaratne, Sarala M; Winfree, Lilly M; Wolstencroft, Katherine; Goble, Carole; Mungall, Christopher J; Haendel, Melissa A; Parkinson, Helen

2017-06-01

In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

Directory of Open Access Journals (Sweden)

Julie A McMurry

2017-06-01

Full Text Available In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases. Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.

Identifying Topics in Microblogs Using Wikipedia.

Directory of Open Access Journals (Sweden)

Ahmet Yıldırım

Full Text Available Twitter is an extremely high volume platform for user generated contributions regarding any topic. The wealth of content created at real-time in massive quantities calls for automated approaches to identify the topics of the contributions. Such topics can be utilized in numerous ways, such as public opinion mining, marketing, entertainment, and disaster management. Towards this end, approaches to relate single or partial posts to knowledge base items have been proposed. However, in microblogging systems like Twitter, topics emerge from the culmination of a large number of contributions. Therefore, identifying topics based on collections of posts, where individual posts contribute to some aspect of the greater topic is necessary. Models, such as Latent Dirichlet Allocation (LDA, propose algorithms for relating collections of posts to sets of keywords that represent underlying topics. In these approaches, figuring out what the specific topic(s the keyword sets represent remains as a separate task. Another issue in topic detection is the scope, which is often limited to specific domain, such as health. This work proposes an approach for identifying domain-independent specific topics related to sets of posts. In this approach, individual posts are processed and then aggregated to identify key tokens, which are then mapped to specific topics. Wikipedia article titles are selected to represent topics, since they are up to date, user-generated, sophisticated articles that span topics of human interest. This paper describes the proposed approach, a prototype implementation, and a case study based on data gathered during the heavily contributed periods corresponding to the four US election debates in 2012. The manually evaluated results (0.96 precision and other observations from the study are discussed in detail.

SitesIdentify: a protein functional site prediction tool

Directory of Open Access Journals (Sweden)

Doig Andrew J

2009-11-01

Full Text Available Abstract Background The rate of protein structures being deposited in the Protein Data Bank surpasses the capacity to experimentally characterise them and therefore computational methods to analyse these structures have become increasingly important. Identifying the region of the protein most likely to be involved in function is useful in order to gain information about its potential role. There are many available approaches to predict functional site, but many are not made available via a publicly-accessible application. Results Here we present a functional site prediction tool (SitesIdentify, based on combining sequence conservation information with geometry-based cleft identification, that is freely available via a web-server. We have shown that SitesIdentify compares favourably to other functional site prediction tools in a comparison of seven methods on a non-redundant set of 237 enzymes with annotated active sites. Conclusion SitesIdentify is able to produce comparable accuracy in predicting functional sites to its closest available counterpart, but in addition achieves improved accuracy for proteins with few characterised homologues. SitesIdentify is available via a webserver at http://www.manchester.ac.uk/bioinformatics/sitesidentify/

Identifying motivational factors within a multinational company

Directory of Open Access Journals (Sweden)

Daniela Bradutanu

2011-08-01

Full Text Available The aim of the study is to identify the main motivational factors within a multinational company. The first objective is to identify work functions, formulated on Abraham Maslow’s pyramid, following the identification of the key characteristics that motivate an employee at the work place and last, but not least, the type of motivation that employees focus, intrinsic or extrinsic. The research method targeted a questionnaire based survey, including various company employees and an interview with the manager. The results confirmed that in Romania, employees put great emphasis on extrinsic motivation, a certain income and job security being primary. These results have implications for managers that in order to effectively motivate staff, first, must know their needs and expectations. To identify the main needs and motivational factors we had as a starting point Maslow's pyramid.

Identifying victims of violence using register-based data

DEFF Research Database (Denmark)

Kruse, Marie; Sørensen, Jan; Brønnum-Hansen, Henrik

2010-01-01

AIMS: The aim of this study was twofold. Firstly we identified victims of violence in national registers and discussed strengths and weaknesses of this approach. Secondly we assessed the magnitude of violence and the characteristics of the victims using register-based data. METHODS: We used three...... nationwide registers to identify victims of violence: The National Patient Register, the Victim Statistics, and the Causes of Death Register. We merged these data and assessed the degree of overlap between data sources. We identified a reference population by selecting all individuals in Denmark over 15....... RESULTS: In 2006, 22,000 individuals were registered as having been exposed to violence. About 70% of these victims were men. Most victims were identified from emergency room contacts and police records, and few from the Causes of Death Register. There was some overlap between the two large data sources...

Method for identifying particulate fluoride compounds

Energy Technology Data Exchange (ETDEWEB)

Tufts, B J

1960-01-01

A method is described for identifying particulates containing fluorides and other complex fluorine compounds such as fluorosilicate in samples collected on membrane filters. The filter is treated with lead chloride to precipitate lead chlorofluoride at each fluoride-containing spot. This microspot is identified by examination in a light microscope. Sulfate and phosphate, which also precipitate if present, can be distinguished and do not interfere. Calibrations are given for the fluorides and the more insoluble salts, relating the original particle size to the reaction site size. Thus, the mass of the particles can be calculated. Results of some field tests in an area of fluoride pollution are given, and compared with standard testing procedures.

Obtaining subjects' consent to publish identifying personal information: current practices and identifying potential issues.

Science.gov (United States)

Yoshida, Akiko; Dowa, Yuri; Murakami, Hiromi; Kosugi, Shinji

2013-11-25

In studies publishing identifying personal information, obtaining consent is regarded as necessary, as it is impossible to ensure complete anonymity. However, current journal practices around specific points to consider when obtaining consent, the contents of consent forms and how consent forms are managed have not yet been fully examined. This study was conducted to identify potential issues surrounding consent to publish identifying personal information. Content analysis was carried out on instructions for authors and consent forms developed by academic journals in four fields (as classified by Journal Citation Reports): medicine general and internal, genetics and heredity, pediatrics, and psychiatry. An online questionnaire survey of editors working for journals that require the submission of consent forms was also conducted. Instructions for authors were reviewed for 491 academic journals (132 for medicine general and internal, 147 for genetics and heredity, 100 for pediatrics, and 112 for psychiatry). Approximately 40% (203: 74 for medicine general and internal, 31 for genetics and heredity, 58 for pediatrics, and 40 for psychiatry) stated that subject consent was necessary. The submission of consent forms was required by 30% (154) of the journals studied, and 10% (50) provided their own consent forms for authors to use. Two journals mentioned that the possible effects of publication on subjects should be considered. Many journal consent forms mentioned the difficulties in ensuring complete anonymity of subjects, but few addressed the study objective, the subjects' right to refuse consent and the withdrawal of consent. The main reason for requiring the submission of consent forms was to confirm that consent had been obtained. Approximately 40% of journals required subject consent to be obtained. However, differences were observed depending on the fields. Specific considerations were not always documented. There is a need to address issues around the study

Obtaining subjects’ consent to publish identifying personal information: current practices and identifying potential issues

Science.gov (United States)

2013-01-01

Background In studies publishing identifying personal information, obtaining consent is regarded as necessary, as it is impossible to ensure complete anonymity. However, current journal practices around specific points to consider when obtaining consent, the contents of consent forms and how consent forms are managed have not yet been fully examined. This study was conducted to identify potential issues surrounding consent to publish identifying personal information. Methods Content analysis was carried out on instructions for authors and consent forms developed by academic journals in four fields (as classified by Journal Citation Reports): medicine general and internal, genetics and heredity, pediatrics, and psychiatry. An online questionnaire survey of editors working for journals that require the submission of consent forms was also conducted. Results Instructions for authors were reviewed for 491 academic journals (132 for medicine general and internal, 147 for genetics and heredity, 100 for pediatrics, and 112 for psychiatry). Approximately 40% (203: 74 for medicine general and internal, 31 for genetics and heredity, 58 for pediatrics, and 40 for psychiatry) stated that subject consent was necessary. The submission of consent forms was required by 30% (154) of the journals studied, and 10% (50) provided their own consent forms for authors to use. Two journals mentioned that the possible effects of publication on subjects should be considered. Many journal consent forms mentioned the difficulties in ensuring complete anonymity of subjects, but few addressed the study objective, the subjects’ right to refuse consent and the withdrawal of consent. The main reason for requiring the submission of consent forms was to confirm that consent had been obtained. Conclusion Approximately 40% of journals required subject consent to be obtained. However, differences were observed depending on the fields. Specific considerations were not always documented. There is a need

Trustworthy persistent identifier systems of the future

Science.gov (United States)

Golodoniuc, Pavel; Klump, Jens; Car, Nicholas

2016-04-01

Over the last two decades, persistent identifier (PID) systems have seen some significant changes in their governance policies, system capabilities, and technology. The development of most systems was driven by two main application areas, namely archives and libraries. Guidelines and criteria for trustworthy PID systems have been clearly devised (Bütikofer, 2009) and many PID system implementations for the identification of static digital objects have been built (e.g., PURL). However systems delivering persistent identifiers for dynamic datasets are not yet mature. There has been a rapid proliferation of different PID systems caused by the specific technical or organisational requirements of various communities that could not be met by existing systems such as DOI, ISBN, and EAN. Many of these different systems were limited by their inability to provide native means of persistent identifier resolution. This has prompted a decoupling of PID-associated data from the resolution service and this is where the Handle system has played a significant role. The Handle allowed to build a distributed system of independently managed resolver services. A trustworthy PID system must be designed to outlive the objects it provides persistent identifiers for, which may cease to exist or otherwise be deprecated, and the technology used to implement it, which will certainly need to change with time. We propose that such a system should rest on four pillars of agreements - (i) definitions, (ii) policies, (iii) services, and (iv) data services, to ensure longevity. While we believe all four pillars are equally important, we intentionally leave regulating aspects of issuing of identifiers and their registration out of the scope of this paper and focus on the agreements that have to be established between PID resolver services and the data sources indicated by the persistent identifiers. We propose an approach to development of PID systems that combines the use of (a) the Handle system

Aspectos fitossociológicos, florísticos e etnobotânicos das palmeiras (Arecaceae de floresta secundária no município de Bragança, PA, Brasil Phytosociological, floristic, and ethnobotanical aspects of the palms (Arecaceae in a secondary forest in the Municipality of Bragança, Pará State, Brazil

Directory of Open Access Journals (Sweden)

Antônio Elielson Sousa da Rocha

2005-09-01

Full Text Available Este trabalho teve como objetivo realizar um levantamento das palmeiras em seis fragmentos de floresta secundária, no município de Bragança, PA, Brasil. Registraram-se 14 espécies distribuídas em nove gêneros, com predominância para Maximiliana maripa (Aubl. Drude e Astrocaryum gynacanthum Mart. São apresentados chave de identificação, descrições, ilustrações, citações de material examinado, e de nomes populares, comentários taxonômicos e etnobotânicos dessas espécies.The purpose of this study was to conduct a floristic inventory of the palms in six fragments of secondary forest in the Municipality of Bragança, Pará State, Brazil. In this study 14 species (nine genera were identified. Maximiliana maripa (Aubl. Drude and Astrocaryum gynacanthum Mart. were the dominant species. We present ethnobotanical data, identification keys, descriptions, illustrations, specimens examined, common names, and general comments about the species.

Can "Federal Sanctuaries" be identified in Triphylia and Arkadia?

DEFF Research Database (Denmark)

Nielsen, Thomas Heine

2013-01-01

This paper discusses whether federal sanctuaries - such as are known from the Achaian and Aitolian Federations - can be identified in Triphylia and Arkadia in the Peloponnese. It is concluded that on present evidence it is not possible to identify such sanctuaries in these areas......This paper discusses whether federal sanctuaries - such as are known from the Achaian and Aitolian Federations - can be identified in Triphylia and Arkadia in the Peloponnese. It is concluded that on present evidence it is not possible to identify such sanctuaries in these areas...

ORCID Author Identifiers: A Primer for Librarians.

Science.gov (United States)

Akers, Katherine G; Sarkozy, Alexandra; Wu, Wendy; Slyman, Alison

2016-01-01

The ORCID (Open Researcher and Contributor ID) registry helps disambiguate authors and streamline research workflows by assigning unique 16-digit author identifiers that enable automatic linkages between researchers and their scholarly activities. This article describes how ORCID works, the benefits of using ORCID, and how librarians can promote ORCID at their institutions by raising awareness of ORCID, helping researchers create and populate ORCID profiles, and integrating ORCID identifiers into institutional repositories and other university research information systems.

Identifying content for simulation-based curricula in urology

DEFF Research Database (Denmark)

Nayahangan, Leizl Joy; Hansen, Rikke Bolling; Lindorff-Larsen, Karen Gilboe

2017-01-01

to identify technical procedures in urology that should be included in a simulation-based curriculum for residency training. MATERIALS AND METHODS: A national needs assessment was performed using the Delphi method involving 56 experts with significant roles in the education of urologists. Round 1 identified...

Identifying national freshwater ecosystem priority areas

CSIR Research Space (South Africa)

Nel, JL

2012-10-01

Full Text Available This presentation highlights the use of systematic conservation planning to identify priority areas for managing the health of freshwater ecosystems and their associated biodiversity and ecosystem services....

Numerical identifiability of the parameters of induction machines

Energy Technology Data Exchange (ETDEWEB)

Corcoles, F.; Pedra, J.; Salichs, M. [Dep. d' Eng. Electrica ETSEIB. UPC, Barcelona (Spain)

2000-08-01

This paper analyses the numerical identifiability of the electrical parameters of induction machines. Relations between parameters and the impossibility to estimate all of them - when only external measures are used: voltage, current, speed and torque - are shown. Formulations of the single and double-cage induction machine, with and without core losses in both models, are developed. The proposed solution is the formulation of machine equations by using the minimum number of parameters (which are identifiable parameters). As an application example, the parameters of a double-cage induction machine are identified using steady-state measurements corresponding to different angular speeds. (orig.)

Structural identifiability analysis of a cardiovascular system model.

Science.gov (United States)

Pironet, Antoine; Dauby, Pierre C; Chase, J Geoffrey; Docherty, Paul D; Revie, James A; Desaive, Thomas

2016-05-01

The six-chamber cardiovascular system model of Burkhoff and Tyberg has been used in several theoretical and experimental studies. However, this cardiovascular system model (and others derived from it) are not identifiable from any output set. In this work, two such cases of structural non-identifiability are first presented. These cases occur when the model output set only contains a single type of information (pressure or volume). A specific output set is thus chosen, mixing pressure and volume information and containing only a limited number of clinically available measurements. Then, by manipulating the model equations involving these outputs, it is demonstrated that the six-chamber cardiovascular system model is structurally globally identifiable. A further simplification is made, assuming known cardiac valve resistances. Because of the poor practical identifiability of these four parameters, this assumption is usual. Under this hypothesis, the six-chamber cardiovascular system model is structurally identifiable from an even smaller dataset. As a consequence, parameter values computed from limited but well-chosen datasets are theoretically unique. This means that the parameter identification procedure can safely be performed on the model from such a well-chosen dataset. Thus, the model may be considered suitable for use in diagnosis. Copyright © 2016 IPEM. Published by Elsevier Ltd. All rights reserved.

Cellular signaling identifiability analysis: a case study.

Science.gov (United States)

Roper, Ryan T; Pia Saccomani, Maria; Vicini, Paolo

2010-05-21

Two primary purposes for mathematical modeling in cell biology are (1) simulation for making predictions of experimental outcomes and (2) parameter estimation for drawing inferences from experimental data about unobserved aspects of biological systems. While the former purpose has become common in the biological sciences, the latter is less common, particularly when studying cellular and subcellular phenomena such as signaling-the focus of the current study. Data are difficult to obtain at this level. Therefore, even models of only modest complexity can contain parameters for which the available data are insufficient for estimation. In the present study, we use a set of published cellular signaling models to address issues related to global parameter identifiability. That is, we address the following question: assuming known time courses for some model variables, which parameters is it theoretically impossible to estimate, even with continuous, noise-free data? Following an introduction to this problem and its relevance, we perform a full identifiability analysis on a set of cellular signaling models using DAISY (Differential Algebra for the Identifiability of SYstems). We use our analysis to bring to light important issues related to parameter identifiability in ordinary differential equation (ODE) models. We contend that this is, as of yet, an under-appreciated issue in biological modeling and, more particularly, cell biology. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Tiered High-Throughput Screening Approach to Identify ...

Science.gov (United States)

High-throughput screening (HTS) for potential thyroid–disrupting chemicals requires a system of assays to capture multiple molecular-initiating events (MIEs) that converge on perturbed thyroid hormone (TH) homeostasis. Screening for MIEs specific to TH-disrupting pathways is limited in the US EPA ToxCast screening assay portfolio. To fill one critical screening gap, the Amplex UltraRed-thyroperoxidase (AUR-TPO) assay was developed to identify chemicals that inhibit TPO, as decreased TPO activity reduces TH synthesis. The ToxCast Phase I and II chemical libraries, comprised of 1,074 unique chemicals, were initially screened using a single, high concentration to identify potential TPO inhibitors. Chemicals positive in the single concentration screen were retested in concentration-response. Due to high false positive rates typically observed with loss-of-signal assays such as AUR-TPO, we also employed two additional assays in parallel to identify possible sources of nonspecific assay signal loss, enabling stratification of roughly 300 putative TPO inhibitors based upon selective AUR-TPO activity. A cell-free luciferase inhibition assay was used to identify nonspecific enzyme inhibition among the putative TPO inhibitors, and a cytotoxicity assay using a human cell line was used to estimate the cellular tolerance limit. Additionally, the TPO inhibition activities of 150 chemicals were compared between the AUR-TPO and an orthogonal peroxidase oxidation assay using

42 CFR 401.118 - Deletion of identifying details.

Science.gov (United States)

2010-10-01

... 42 Public Health 2 2010-10-01 2010-10-01 false Deletion of identifying details. 401.118 Section 401.118 Public Health CENTERS FOR MEDICARE & MEDICAID SERVICES, DEPARTMENT OF HEALTH AND HUMAN... Deletion of identifying details. When CMS publishes or otherwise makes available an opinion or order...

OCRWM baseline management procedure for document identifiers

International Nuclear Information System (INIS)

1993-03-01

This procedure establishes a uniform numbering system (document identifier) for all Program and project technical, cost, and schedule baselines, and selected management and procurement documents developed for and controlled by the Office of Civilian Radioactive Waste Management (OCRWM) for the Civilian Radioactive Waste Management System (CRWMS). The document identifier defined in this procedure is structured to ensure that the relational integrity between configuration items (CIs) and their associated documentation and software is maintained, traceable, categorical, and retrievable for the life of the program

Expression profiling identifies genes involved in emphysema severity

Directory of Open Access Journals (Sweden)

Bowman Rayleen V

2009-09-01

Full Text Available Abstract Chronic obstructive pulmonary disease (COPD is a major public health problem. The aim of this study was to identify genes involved in emphysema severity in COPD patients. Gene expression profiling was performed on total RNA extracted from non-tumor lung tissue from 30 smokers with emphysema. Class comparison analysis based on gas transfer measurement was performed to identify differentially expressed genes. Genes were then selected for technical validation by quantitative reverse transcriptase-PCR (qRT-PCR if also represented on microarray platforms used in previously published emphysema studies. Genes technically validated advanced to tests of biological replication by qRT-PCR using an independent test set of 62 lung samples. Class comparison identified 98 differentially expressed genes (p p Gene expression profiling of lung from emphysema patients identified seven candidate genes associated with emphysema severity including COL6A3, SERPINF1, ZNHIT6, NEDD4, CDKN2A, NRN1 and GSTM3.

Methods for identifying 30 chronic conditions: application to administrative data.

Science.gov (United States)

Tonelli, Marcello; Wiebe, Natasha; Fortin, Martin; Guthrie, Bruce; Hemmelgarn, Brenda R; James, Matthew T; Klarenbach, Scott W; Lewanczuk, Richard; Manns, Braden J; Ronksley, Paul; Sargious, Peter; Straus, Sharon; Quan, Hude

2015-04-17

Multimorbidity is common and associated with poor clinical outcomes and high health care costs. Administrative data are a promising tool for studying the epidemiology of multimorbidity. Our goal was to derive and apply a new scheme for using administrative data to identify the presence of chronic conditions and multimorbidity. We identified validated algorithms that use ICD-9 CM/ICD-10 data to ascertain the presence or absence of 40 morbidities. Algorithms with both positive predictive value and sensitivity ≥70% were graded as "high validity"; those with positive predictive value ≥70% and sensitivity <70% were graded as "moderate validity". To show proof of concept, we applied identified algorithms with high to moderate validity to inpatient and outpatient claims and utilization data from 574,409 people residing in Edmonton, Canada during the 2008/2009 fiscal year. Of the 40 morbidities, we identified 30 that could be identified with high to moderate validity. Approximately one quarter of participants had identified multimorbidity (2 or more conditions), one quarter had a single identified morbidity and the remaining participants were not identified as having any of the 30 morbidities. We identified a panel of 30 chronic conditions that can be identified from administrative data using validated algorithms, facilitating the study and surveillance of multimorbidity. We encourage other groups to use this scheme, to facilitate comparisons between settings and jurisdictions.

Coherence method of identifying signal noise model

International Nuclear Information System (INIS)

Vavrin, J.

1981-01-01

The noise analysis method is discussed in identifying perturbance models and their parameters by a stochastic analysis of the noise model of variables measured on a reactor. The analysis of correlations is made in the frequency region using coherence analysis methods. In identifying an actual specific perturbance, its model should be determined and recognized in a compound model of the perturbance system using the results of observation. The determination of the optimum estimate of the perturbance system model is based on estimates of related spectral densities which are determined from the spectral density matrix of the measured variables. Partial and multiple coherence, partial transfers, the power spectral densities of the input and output variables of the noise model are determined from the related spectral densities. The possibilities of applying the coherence identification methods were tested on a simple case of a simulated stochastic system. Good agreement was found of the initial analytic frequency filters and the transfers identified. (B.S.)

Persistent Identifiers for Dutch cultural heritage institutions

Science.gov (United States)

Ras, Marcel; Kruithof, Gijsbert

2016-04-01

Over the past years, more and more collections belonging to archives, libraries, media, museums, and knowledge institutes are being digitised and made available online. These are exciting times for ALM institutions. They are realising that, in the information society, their collections are goldmines. Unfortunately most heritage institutions in the Netherlands do not yet meet the basic preconditions for long-term availability of their collections. The digital objects often have no long lasting fixed reference yet. URL's and web addresses change. Some digital objects that were referenced in Europeana and other portals can no longer be found. References in scientific articles have a very short life span, which is damaging for scholarly research. In 2015, the Dutch Digital Heritage Network (NDE) has started a two-year work program to co-ordinate existing initiatives in order to improve the (long-term) accessibility of the Dutch digital heritage for a wide range of users, anytime, anyplace. The Digital Heritage Network is a partnership established on the initiative of the Ministry of Education, Culture and Science. The members of the NDE are large, national institutions that strive to professionally preserve and manage digital data, e.g. the National Library, The Netherlands Institute for Sound and Vision, the Netherlands Cultural Heritage Agency, the Royal Netherlands Academy of Arts and Sciences, the National Archive of the Netherlands and the DEN Foundation, and a growing number of associations and individuals both within and outside the heritage sector. By means of three work programmes the goals of the Network should be accomplished and improve the visibility, the usability and the sustainability of digital heritage. Each programme contains of a set of projects. Within the sustainability program a project on creating a model for persistent identifiers is taking place. The main goals of the project are (1) raise awareness among cultural heritage institutions on the

Post discharge issues identified by a call-back program: identifying improvement opportunities.

Science.gov (United States)

Ojeda, Patricia I; Kara, Areeba

2017-12-01

The period following discharge from the hospital is one of heightened vulnerability. Discharge instructions serve as a guide during this transition. Yet, clinicians receive little feedback on the quality of this document that ties into the patients' experience. We reviewed the issues voiced by discharged patients via a call-back program and compared them to the discharge instructions they had received. At our institution, patients receive an automated call forty-eight hours following discharge inquiring about progress. If indicated by the response to the call, they are directed to a nurse who assists with problem solving. We reviewed the nursing documentation of these encounters for a period of nine months. The issues voiced were grouped into five categories: communication, medications, durable medical equipment/therapies, follow up and new or ongoing symptoms. The discharge instructions given to each patient were reviewed. We retrieved data on the number of discharges from each specialty from the hospital over the same period. A total of 592 patients voiced 685 issues. The numbers of patients discharged from medical or surgical services identified as having issues via the call-back line paralleled the proportions discharged from medical and surgical services from the hospital during the same period. Nearly a quarter of the issues discussed had been addressed in the discharge instructions. The most common category of issues was related to communication deficits including missing or incomplete information which made it difficult for the patient to enact or understand the plan of care. Medication prescription related issues were the next most common. Resource barriers and questions surrounding medications were often unaddressed. Post discharge issues affect patients discharged from all services equally. Data from call back programs may provide actionable targets for improvement, identify the inpatient team's 'blind spots' and be used to provide feedback to clinicians.

PHENOLOGY OF Copernicia prunifera (ARECACEAE IN A CAATINGA AREA OF RIO GRANDE DO NORTE

Directory of Open Access Journals (Sweden)

Talita Geovanna Fernandes Rocha

2015-12-01

Full Text Available The objective of this study was to evaluate the vegetative and reproductive phenology of Copernicia prunifera (carnauba wax in natural populations correlated with climate variables. The study was conducted in a native area, located in the Campus of Academic Unit Specialized in Agricultural Sciences of UFRN in the municipality of Macaíba, RN. The evaluations were made between May 2010 and December 2012, totaling 67 fortnightly observations of vegetative phenophases and reproductive. The relationship between the occurrence of each phenophase and climate variables (air temperature, precipitation, relative humidity, wind speed and radiation were tested by Spearman correlation, performed with the climate data of the first (rS1, second (rS2, third (rS3 and fourth (rS4 phenological fortnight prior to the event. Individuals of C. prunifera are asynchronous with leaf loss and emission of new leaves all the time. Flowering is subanual, i.e. occurs more than once a year. There is a positive relationship between the intensity of unripe fruits and higher temperature with delay of three (rS3 = 0.261; P < 0.005 to four fortnights (rS4 = 0.276; P < 0.005 to the phenological event. We observed also significant positive correlations between temperature and number of trees with ripe fruits. Thus, it is assumed that the species studied was influenced by aspects of morphology and physiology, with environmental factors interfering secondarily.

Geographical ecology of the palms (Arecaceae): determinants of diversity and distributions across spatial scales

DEFF Research Database (Denmark)

Eiserhardt, Wolf L.; Svenning, J.-C.; Kissling, W. Daniel

2011-01-01

, and dispersal again at all scales. For species richness, climate and dispersal appear to be important at continental to global scales, soil at landscape and broader scales, and topography at landscape and finer scales. Some scale–predictor combinations have not been studied or deserve further attention, e......Background The palm family occurs in all tropical and sub-tropical regions of the world. Palms are of high ecological and economical importance, and display complex spatial patterns of species distributions and diversity. Scope This review summarizes empirical evidence for factors that determine...... palm species distributions, community composition and species richness such as the abiotic environment (climate, soil chemistry, hydrology and topography), the biotic environment (vegetation structure and species interactions) and dispersal. The importance of contemporary vs. historical impacts...

Global Microbial Identifier

DEFF Research Database (Denmark)

Wielinga, Peter; Hendriksen, Rene S.; Aarestrup, Frank Møller

2017-01-01

) will likely also enable a much better understanding of the pathogenesis of the infection and the molecular basis of the host response to infection. But the full potential of these advances will only transpire if the data in this area become transferable and thereby comparable, preferably in open-source...... of microorganisms, for the identification of relevant genes and for the comparison of genomes to detect outbreaks and emerging pathogens. To harness the full potential of WGS, a shared global database of genomes linked to relevant metadata and the necessary software tools needs to be generated, hence the global...... microbial identifier (GMI) initiative. This tool will ideally be used in amongst others in the diagnosis of infectious diseases in humans and animals, in the identification of microorganisms in food and environment, and to track and trace microbial agents in all arenas globally. This will require...

Palaeo-precipitation is a major determinant of palm species richness patterns across Madagascar: a tropical biodiversity hotspot

Science.gov (United States)

Rakotoarinivo, Mijoro; Blach-Overgaard, Anne; Baker, William J.; Dransfield, John; Moat, Justin; Svenning, Jens-Christian

2013-01-01

The distribution of rainforest in many regions across the Earth was strongly affected by Pleistocene ice ages. However, the extent to which these dynamics are still important for modern-day biodiversity patterns within tropical biodiversity hotspots has not been assessed. We employ a comprehensive dataset of Madagascan palms (Arecaceae) and climate reconstructions from the last glacial maximum (LGM; 21 000 years ago) to assess the relative role of modern environment and LGM climate in explaining geographical species richness patterns in this major tropical biodiversity hotspot. We found that palaeoclimate exerted a strong influence on palm species richness patterns, with richness peaking in areas with higher LGM precipitation relative to present-day even after controlling for modern environment, in particular in northeastern Madagascar, consistent with the persistence of tropical rainforest during the LGM primarily in this region. Our results provide evidence that diversity patterns in the World's most biodiverse regions may be shaped by long-term climate history as well as contemporary environment. PMID:23427173

Floristic and phytosociology in dense “terra firme” rainforest in the Belo Monte Hydroelectric Plant influence area, Pará, Brazil

Directory of Open Access Journals (Sweden)

DAN. Lemos

Full Text Available Abstract The objective of the present study was to characterise the floristic and phytosociological composition on a stretch of dense “Terra Firme” rainforest located in the Belo Monte hydroelectric plant area of influence, located in the state of Pará, Brazil. All trees with DAP >10 cm situated in 75 permanent plots of 1 ha were inventoried. 27,126 individuals trees (361 ind.ha-1, distributed in 59 botanical families, comprising 481 species were observed. The families with the largest number of species were Fabaceae (94, Araceae (65 and Arecaceae (43, comprising 43.7% of total species. The species Alexa grandiflora (4.41, Cenostigma tocantinum (2.50 and Bertholletia excelsa (2.28 showed the highest importance values (IV. The ten species with greater IV are concentrated (22%. The forest community has high species richness and can be classified as diverse age trees, heterogeneous and of medium conservation condition.

Preliminary checklist of the vascular flora of the Sub-Andean forest at Cuchilla El Fara (Santander-Colombia)

International Nuclear Information System (INIS)

Medina, Ruth; Reina, Miriam; Herrera, Edna; Avila, Fabio Andres; Chaparro, Omar; Cortes B, Rocio

2010-01-01

A preliminary checklist of the vascular flora of the sub-Andean forest of the Cuchilla El Fara is present ed. El Fara is located at the Guantiva - La Rusia - Iguaque biological corridor, in the municipalities of Charala, Gambita, and Suaita (Santander-Colombia). Information on habit, local altitudinal range, and collection number is recorded for each species. A total of 409 species of vascular plants included in 226 genera, and 105 families were recorded. The families with the highest number of genera were Rubiaceae (18), Asteraceae (10), Melastomataceae (10), Orchidaceae (10), Euphorbiaceae (8), Arecaceae (7) and Fabaceae (7). At specific level, the best represented families were Rubiaceae (33), Melastomataceae (28), Lauraceae (21), Asteraceae (17), Araceae (17), Orchidaceae (17) and Gesneriaceae (15). The affinities of the flora with other Neotropical sub-Andean forests are discussed. Finally, species of all IUCN threat categories are highlighted so that the information presented here can make a contribution to restoration and conservation programs.

In vitro cytotoxic activity of Brazilian Middle West plant extracts

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Talal Suleiman Mahmoud

2011-06-01

Full Text Available Cytotoxic activity of eight plant extracts, native from the Mid-West of Brazil comprising Cerrado, Pantanal and semideciduous forest, was evaluated for MDA-MB-435, SF-295, and HCT-8 cancer cell strains. A single 100 µg.mL-1 dose of each extract was employed with 72 h of incubation for all tests. Doxorubicin (1 µg.mL-1 was used as the positive control and the MTT method was used to detect the activity. Cytotoxicity of distinct polarities was observed in thirty extracts (46%, from different parts of the following species: Tabebuia heptaphylla (Vell. Toledo, Bignoniaceae, Tapirira guianensis Aubl., Anacardiaceae, Myracrodruon urundeuva Allemão, Anacardiaceae, Schinus terebinthifolius Raddi, Anacardiaceae, Gomphrena elegans Mart., Amaranthaceae, Attalea phalerata Mart. ex Spreng., Arecaceae, Eugenia uniflora L., Myrtaceae, and Annona dioica A. St.-Hil., Annonaceae. Extracts of at least two tested cell strains were considered to be highly active since their inhibition rate was over 75%.

Trigona corvina: An Ecological Study Based on Unusual Nest Structure and Pollen Analysis

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David W. Roubik

2009-01-01

Full Text Available We found that the nest of Trigona corvina (Apidae; Meliponini consists mainly of pollen exines from bee excrement, forming a scutellum shield encasing the colony. A 20-year-old nest (1980–2000 from a lowland Panama forested habitat was sawed in half longitudinally, and a 95 cm transect was systematically sampled each 5 cm. Samples subjected to detailed pollen analysis held 72 botanical species belonging to 65 genera in 41 families. Over 90% of scutellum pollen volume was Cecropiaceae and Arecaceae, among >1013 grains. Potentially the oldest samples, in the middle of the nest, indicate that Mimosoideae, Euphorbiaceae, and Bombacaceae (now Malvaceae were lost when Africanized honey bee competitors colonized Panama in 1984. Cecropia deposited in the nest increased markedly after landscape-level vegetation disturbance. Pollen from Cavanillesia demonstrated that the foraging range encompassed 3 km2 and perhaps 500 plant species. Trigona corvina primarily foraged on plants with large inflorescences, consistent with foraging theory considering their aggressive behavior.

DNA barcoding based on plastid matK and RNA polymerase for assessing the genetic identity of date (Phoenix dactylifera L.) cultivars.

Science.gov (United States)

Enan, M R; Ahamed, A

2014-02-14

The cultivated date palm is the most agriculturally important species of the Arecaceae family. The standard chloroplast DNA barcode for land plants recommended by the Consortium for the Barcode of Life plant working group needs to be evaluated for a wide range of plant species. Therefore, we assessed the potential of the matK and rpoC1 markers for the authentication of date cultivars. There is not one universal method to authenticate date cultivars. In this study, 11 different date cultivars were sequenced and analyzed for matK and rpoC1 genes by using bioinformatic tools to establish a cultivar-specific molecular monogram. The chloroplast matK marker was more informative than the rpoC1 chloroplast DNA markers. Phylogenetic trees were constructed on the basis of the matK and rpoC1 sequences, and the results suggested that matK alone or in combination with rpoC1 can be used for determining the levels of genetic variation and for barcoding.

GARDEN PLANTS: PROBLEMS CAUSED BY AN UNEXPECTED VISITOR

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M. A. Oliveira

2014-09-01

Full Text Available Scarabaeidae defoliators are considered of great importance in Brazil because they seriously damage the leaf system of several plant species. The objective of this study was to report the occurrence of the defoliating beetle Bolax campicola Machatschke, 1974 (Coleoptera: Scarabaeidae attacking ornamental plants in the urban area of municipality of Forestal, Minas Gerais State, Brazil. The initial attack was observed on the ornamental palm species Dypsis lutescens (Arecaceae whose leaves were completely consumed, and then these insects began to feed on Canna indica (Cannaceae, another ornamental species, which was found near to the first. However, in the same location newly planted fruit tree seedlings of Plinia trunciflora (Myrtaceae, Averrhoa carambola (Oxalidaceae and Malpighia emarginata (Malpighiaceae were attacked and completely defoliated. This report of damage to plants in urban areas by B. flavolineatus demonstrates the need for studies on the behavior and feeding preference of these insects, and even their ability to adapt to different host plants.

Minimal covariant observables identifying all pure states

Energy Technology Data Exchange (ETDEWEB)

Carmeli, Claudio, E-mail: claudio.carmeli@gmail.com [D.I.M.E., Università di Genova, Via Cadorna 2, I-17100 Savona (Italy); I.N.F.N., Sezione di Genova, Via Dodecaneso 33, I-16146 Genova (Italy); Heinosaari, Teiko, E-mail: teiko.heinosaari@utu.fi [Turku Centre for Quantum Physics, Department of Physics and Astronomy, University of Turku (Finland); Toigo, Alessandro, E-mail: alessandro.toigo@polimi.it [Dipartimento di Matematica, Politecnico di Milano, Piazza Leonardo da Vinci 32, I-20133 Milano (Italy); I.N.F.N., Sezione di Milano, Via Celoria 16, I-20133 Milano (Italy)

2013-09-02

It has been recently shown by Heinosaari, Mazzarella and Wolf (2013) [1] that an observable that identifies all pure states of a d-dimensional quantum system has minimally 4d−4 outcomes or slightly less (the exact number depending on d). However, no simple construction of this type of minimal observable is known. We investigate covariant observables that identify all pure states and have minimal number of outcomes. It is shown that the existence of this kind of observables depends on the dimension of the Hilbert space.

49 CFR 7.6 - Deletion of identifying detail.

Science.gov (United States)

2010-10-01

... 49 Transportation 1 2010-10-01 2010-10-01 false Deletion of identifying detail. 7.6 Section 7.6... To Be Made Public by DOT § 7.6 Deletion of identifying detail. Whenever it is determined to be... the deletion will accompany the record published or made available for inspection. ...

37 CFR 211.5 - Deposit of identifying material.

Science.gov (United States)

2010-07-01

... option, deposit four reproductions in the most complete form of the mask work as fixed in a semiconductor... 37 Patents, Trademarks, and Copyrights 1 2010-07-01 2010-07-01 false Deposit of identifying... COPYRIGHT OFFICE AND PROCEDURES MASK WORK PROTECTION § 211.5 Deposit of identifying material. (a) General...

International Team Identifies Biomarker for Scleroderma

Science.gov (United States)

... Spotlight on Research International Team Identifies Biomarker for Scleroderma By Kirstie Saltsman, Ph.D. | May 5, 2014 ... molecule correlates with a more severe form of scleroderma, a chronic autoimmune disorder that involves the abnormal ...

Identifying the borders of mathematical knowledge

International Nuclear Information System (INIS)

Silva, Filipi Nascimento; Travencolo, Bruno A N; Viana, Matheus P; Costa, Luciano da Fontoura

2010-01-01

Based on a divide and conquer approach, knowledge about nature has been organized into a set of interrelated facts, allowing a natural representation in terms of graphs: each 'chunk' of knowledge corresponds to a node, while relationships between such chunks are expressed as edges. This organization becomes particularly clear in the case of mathematical theorems, with their intense cross-implications and relationships. We have derived a web of mathematical theorems from Wikipedia and, thanks to the powerful concept of entropy, identified its more central and frontier elements. Our results also suggest that the central nodes are the oldest theorems, while the frontier nodes are those recently added to the network. The network communities have also been identified, allowing further insights about the organization of this network, such as its highly modular structure.

28 CFR 22.22 - Revelation of identifiable data.

Science.gov (United States)

2010-07-01

... STATISTICAL INFORMATION § 22.22 Revelation of identifiable data. (a) Except as noted in paragraph (b) of this section, research and statistical information relating to a private person may be revealed in identifiable... sections 223(a)(12)(A), 223(a)(13), 223(a)(14), and 243 of the Juvenile Justice and Delinquency Prevention...

Conhecimento tradicional associado ao uso de butiás (Butia spp., arecaceae no sul do Brasil Traditional knowledge associated with the use of butia palm (Butia spp., arecaceae in the southern of Brazil

Directory of Open Access Journals (Sweden)

Miriam Valli Büttow

2009-12-01

Full Text Available O gênero Butia é amplamente distribuído no estado do Rio Grande do Sul e constitui parte importante da biodiversidade deste estado. Devido à sua importância, foi realizado um levantamento do conhecimento tradicional associado a esta palmeira, enfocando principalmente os usos dados à planta e aos frutos. Para tanto, foram realizadas entrevistas em comunidades do interior de sete municípios do sul do Rio Grande do Sul. entre os usos principais do butiá relacionados pelos entrevistados, destacam-se o consumo do fruto in natura, a produção de sucos, licores, geleias, sorvetes, bolos e bombons, além de outras sobremesas. existem agroindústrias produzindo suco natural de butiá como uma nova alternativa para incrementar a renda familiar. Com as folhas e a polpa do fruto são realizados trabalhos artesanais, que são expostos em feiras. esta planta é usada para ornamentar jardins e quintais. os entrevistados reconhecem grande variabilidade entre os frutos do butiazeiro em relação ao tamanho, ao sabor, à coloração da película, à deiscência e à acidez. também relatam a intensa interação de pássaros e insetos com a planta, especialmente nos períodos de floração e de frutificação. Além da manutenção do uso tradicional da planta pela população, produtos inovadores a partir do butiá vêm sendo desenvolvidos. existe um grande potencial de utilização da planta de butiá, principalmente do fruto, na culinária, na produção de doces, geleias, suco e licor. as comunidades visitadas demonstram uma relação de afeto e respeito pelo butiazeiro.The Butia genus is widely distributed in the state of Rio Grande do Sul and it is established as an important part of this biodiversity. Due to its importance, a survey of traditional knowledge about this palm was conducted, focusing on uses of the plant and fruits. For this research, interviews were realized in rural communities of seven counties in the south of Rio Grande do Sul. among the main uses of the butia palm related by the interviewers, the consumption of the fruit in natura, the juice production, liquors, jams, ice creams, cakes, candies and other desserts stand out. there are agro-industries producing natural butia palm juice as a new alternative to supplement the family income. Handicrafts are made with leaves and fruit pulp and sold in local fairs. this plant is also used as an ornamental in gardens and backyards. the interviewers recognize great variability among Butia fruits in terms of size, flavor, skin coloring, dehiscence and acidity. They report the intense interaction of birds and insects with the plant especially in the flowering and fruiting period. along with the maintenance of the traditional uses of the plant by the population, innovative products from butia palm are being developed. there is a considerable potential to expand the uses of the Butia plant, mainly in cooking, sweet production, jam, juice and liquor. the visited communities showed a relationship of affection and respect for the Butia palms.

34 CFR 5.16 - Deletion of identifying details.

Science.gov (United States)

2010-07-01

... 34 Education 1 2010-07-01 2010-07-01 false Deletion of identifying details. 5.16 Section 5.16 Education Office of the Secretary, Department of Education AVAILABILITY OF INFORMATION TO THE PUBLIC PURSUANT TO PUB. L. 90-23 (Eff. until 7-14-10) What Records Are Available § 5.16 Deletion of identifying...

Identifiability and Identification of Trace Continuous Pollutant Source

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Hongquan Qu

2014-01-01

Full Text Available Accidental pollution events often threaten people’s health and lives, and a pollutant source is very necessary so that prompt remedial actions can be taken. In this paper, a trace continuous pollutant source identification method is developed to identify a sudden continuous emission pollutant source in an enclosed space. The location probability model is set up firstly, and then the identification method is realized by searching a global optimal objective value of the location probability. In order to discuss the identifiability performance of the presented method, a conception of a synergy degree of velocity fields is presented in order to quantitatively analyze the impact of velocity field on the identification performance. Based on this conception, some simulation cases were conducted. The application conditions of this method are obtained according to the simulation studies. In order to verify the presented method, we designed an experiment and identified an unknown source appearing in the experimental space. The result showed that the method can identify a sudden trace continuous source when the studied situation satisfies the application conditions.

Study Identifies New Lymphoma Treatment Target

Science.gov (United States)

NCI researchers have identified new therapeutic targets for diffuse large B-cell lymphoma. Drugs that hit these targets are under clinical development and the researchers hope to begin testing them in clinical trials of patients with DLBCL.

Radiograph identifying means

International Nuclear Information System (INIS)

Sheldon, A.D.

1983-01-01

A flexible character-indentable plastics embossing tape is backed by and bonded to a lead strip, not more than 0.025 inches thick, to form a tape suitable for identifying radiographs. The lead strip is itself backed by a relatively thin and flimsy plastics or fabric strip which, when removed, allows the lead plastic tape to be pressure-bonded to the surface to be radiographed. A conventional tape-embossing gun is used to indent the desired characters in succession into the lead-backed tape, without necessarily severing the lead; and then the backing strip is peeled away to expose the layer of adhesive which pressure-bonds the indented tape to the object to be radiographed. X-rays incident on the embossed tape will cause the raised characters to show up dark on the subsequently-developed film, whilst the raised side areas will show up white. Each character will thus stand out on the developed film. (author)

Identifying knowledge in decision-making processes

DEFF Research Database (Denmark)

Jensen, Anna Rose Vagn; Ahmed-Kristensen, Saeema

2010-01-01

Managing knowledge reflects the innovation capability of a company. Mapping decision processes and links to knowledge is a way to learn more in structuring knowledge in innovation processes. Through an empirical study the paper aims to identify knowledge...

Identifying Pornographic Materials with Judgment Analysis

Science.gov (United States)

Houston, Judith A.; Houston, Samuel R.

1974-01-01

The primary purpose of this study was to determine if a policy-capturing methodology (JAN) which has been successfully utilized in military and educational research could be adapted for use as a procedure in identifying pornographic material. (Author)

Levantamento florístico e fitossociológico em duas áreas de cerrado sensu stricto no Parque Estadual da Serra de Caldas Novas, Goiás

Directory of Open Access Journals (Sweden)

Silva Lucivânio Oliveira

2002-01-01

Full Text Available A necessidade de se conhecer mais sobre o Bioma Cerrado torna-se cada vez mais urgente, devido à destruição acelerada deste bioma. Este trabalho teve como objetivo realizar um levantamento florístico e fitossociológico em duas áreas de Cerrado sensu stricto, no Parque Estadual da Serra de Caldas Novas, registrando as espécies arbóreas e arbustivas, utilizando o método de Point Centered Quarter. Verificou-se que apesar de algumas diferenças litológicas, latossolo vermelho-escuro na primeira área e vermelho-amarelo na segunda, a similaridade entre elas foi alta, com índices de Jaccard (0,72 e Morisita (0,64. Das 67 espécies pertencentes a 51 gêneros e 29 famílias, 48 foram comuns às duas áreas. Kielmeyera coriacea, Qualea grandiflora, Caryocar brasiliense, Syagrus flexuosa e Ouratea hexasperma tiveram os maiores Índices de Valor de Importância na primeira área e Pouteria ramiflora, Qualea parviflora, Qualea grandiflora, Caryocar brasiliense e Vochysia cinamommea, foram as espécies de maior importância na segunda área. A família Vochysiaceae foi a de maior IVI em ambas as áreas e Leguminosae apresentou o maior número de espécies (15, seguindo Vochysiaceae (7, Apocynaceae (5 e Myrtaceae (4.

Identifying Cancer Driver Genes Using Replication-Incompetent Retroviral Vectors

Directory of Open Access Journals (Sweden)

Victor M. Bii

2016-10-01

Full Text Available Identifying novel genes that drive tumor metastasis and drug resistance has significant potential to improve patient outcomes. High-throughput sequencing approaches have identified cancer genes, but distinguishing driver genes from passengers remains challenging. Insertional mutagenesis screens using replication-incompetent retroviral vectors have emerged as a powerful tool to identify cancer genes. Unlike replicating retroviruses and transposons, replication-incompetent retroviral vectors lack additional mutagenesis events that can complicate the identification of driver mutations from passenger mutations. They can also be used for almost any human cancer due to the broad tropism of the vectors. Replication-incompetent retroviral vectors have the ability to dysregulate nearby cancer genes via several mechanisms including enhancer-mediated activation of gene promoters. The integrated provirus acts as a unique molecular tag for nearby candidate driver genes which can be rapidly identified using well established methods that utilize next generation sequencing and bioinformatics programs. Recently, retroviral vector screens have been used to efficiently identify candidate driver genes in prostate, breast, liver and pancreatic cancers. Validated driver genes can be potential therapeutic targets and biomarkers. In this review, we describe the emergence of retroviral insertional mutagenesis screens using replication-incompetent retroviral vectors as a novel tool to identify cancer driver genes in different cancer types.

Anesthesiology leadership rounding: identifying opportunities for improvement.

Science.gov (United States)

Gravenstein, Dietrich; Ford, Susan; Enneking, F Kayser

2012-01-01

Rounding that includes participation of individuals with authority to implement changes has been advocated as important to the transformation of an institution into a high-quality and safe organization. We describe a Department of Anesthesiology's experience with leadership rounding. The Department Chair or other senior faculty designate, a quality coordinator, up to four residents, the ward charge nurse, and patient nurses participated in rounds at bedsides. During a 23-month period, 14 significant opportunities to improve care were identified. Nurses identified 5 of these opportunities, primary team physicians 2, the rounding team 4, and patients or their family members another 3. The anesthesiology service had sole or shared responsibility for 10 improvements. A variety of organizations track specific measures across all phases of the patient experience to gauge quality of care. Chart auditing tools for detecting threats to safety are often used. These measures and tools missed opportunities for improvement that were discovered only through rounding. We conclude that the introduction of leadership rounding by an anesthesiology service can identify opportunities for improving quality that are not captured by conventional efforts.

Identifying attributes of food literacy: a scoping review.

Science.gov (United States)

Azevedo Perry, Elsie; Thomas, Heather; Samra, H Ruby; Edmonstone, Shannon; Davidson, Lyndsay; Faulkner, Amy; Petermann, Lisa; Manafò, Elizabeth; Kirkpatrick, Sharon I

2017-09-01

An absence of food literacy measurement tools makes it challenging for nutrition practitioners to assess the impact of food literacy on healthy diets and to evaluate the outcomes of food literacy interventions. The objective of the present scoping review was to identify the attributes of food literacy. A scoping review of peer-reviewed and grey literature was conducted and attributes of food literacy identified. Subjects included in the search were high-risk groups. Eligible articles were limited to research from Canada, USA, the UK, Australia and New Zealand. The search identified nineteen peer-reviewed and thirty grey literature sources. Fifteen identified food literacy attributes were organized into five categories. Food and Nutrition Knowledge informs decisions about intake and distinguishing between 'healthy' and 'unhealthy' foods. Food Skills focuses on techniques of food purchasing, preparation, handling and storage. Self-Efficacy and Confidence represent one's capacity to perform successfully in specific situations. Ecologic refers to beyond self and the interaction of macro- and microsystems with food decisions and behaviours. Food Decisions reflects the application of knowledge, information and skills to make food choices. These interdependent attributes are depicted in a proposed conceptual model. The lack of evaluated tools inhibits the ability to assess and monitor food literacy; tailor, target and evaluate programmes; identify gaps in programming; engage in advocacy; and allocate resources. The present scoping review provides the foundation for the development of a food literacy measurement tool to address these gaps.

Identifying mechanistic similarities in drug responses

KAUST Repository

Zhao, C.; Hua, J.; Bittner, M. L.; Ivanov, I.; Dougherty, a. E. R.

2012-01-01

Motivation: In early drug development, it would be beneficial to be able to identify those dynamic patterns of gene response that indicate that drugs targeting a particular gene will be likely or not to elicit the desired response. One approach

Identifying subgroup markers in heterogeneous populations

NARCIS (Netherlands)

de Ronde, Jorma J.; Rigaill, Guillem; Rottenberg, Sven; Rodenhuis, Sjoerd; Wessels, Lodewyk F. A.

2013-01-01

Traditional methods that aim to identify biomarkers that distinguish between two groups, like Significance Analysis of Microarrays or the t-test, perform optimally when such biomarkers show homogeneous behavior within each group and differential behavior between the groups. However, in many

Drug-related problems identified in medication reviews by Australian pharmacists

DEFF Research Database (Denmark)

Stafford, Andrew C; Tenni, Peter C; Peterson, Gregory M

2009-01-01

OBJECTIVE: In Australia, accredited pharmacists perform medication reviews for patients to identify and resolve drug-related problems. We analysed the drug-related problems identified in reviews for both home-dwelling and residential care-facility patients. The objective of this study was to exam......OBJECTIVE: In Australia, accredited pharmacists perform medication reviews for patients to identify and resolve drug-related problems. We analysed the drug-related problems identified in reviews for both home-dwelling and residential care-facility patients. The objective of this study....... These reviews had been self-selected by pharmacists and submitted as part of the reaccreditation process to the primary body responsible for accrediting Australian pharmacists to perform medication reviews. The drug-related problems identified in each review were classified by type and drugs involved. MAIN...... OUTCOME MEASURE: The number and nature of drug-related problems identified in pharmacist-conducted medication reviews. RESULTS: There were 1,038 drug-related problems identified in 234 medication reviews (mean 4.6 (+/-2.2) problems per review). The number of problems was higher (4.9 +/- 2.0 vs. 3.9 +/- 2...

Global identifiability of linear compartmental models--a computer algebra algorithm.

Science.gov (United States)

Audoly, S; D'Angiò, L; Saccomani, M P; Cobelli, C

1998-01-01

A priori global identifiability deals with the uniqueness of the solution for the unknown parameters of a model and is, thus, a prerequisite for parameter estimation of biological dynamic models. Global identifiability is however difficult to test, since it requires solving a system of algebraic nonlinear equations which increases both in nonlinearity degree and number of terms and unknowns with increasing model order. In this paper, a computer algebra tool, GLOBI (GLOBal Identifiability) is presented, which combines the topological transfer function method with the Buchberger algorithm, to test global identifiability of linear compartmental models. GLOBI allows for the automatic testing of a priori global identifiability of general structure compartmental models from general multi input-multi output experiments. Examples of usage of GLOBI to analyze a priori global identifiability of some complex biological compartmental models are provided.

Genetic Screens in Yeast to Identify BRCA1 Modifiers

National Research Council Canada - National Science Library

Plon, Sharon E

2004-01-01

.... The yeast RAD9 protein has similar functions and sequence motifs as BRCA1 and we proposed to identify candidate modifier loci by identifying haploinsufficient mutations at a second locus that alters...

Using Persuasion Models to Identify Givers.

Science.gov (United States)

Ferguson, Mary Ann; And Others

1986-01-01

Assesses the feasibility of and suggests using W. J. McGuire's information processing theory and cognitive response analysis theory in research studies to identify "givers"--those who are likely to contribute money and resources to charities or volunteer to aid philanthropic organizations. (SRT)

Easy Long-Term Identifiers and the "Data Paper"

Science.gov (United States)

Kunze, John

2011-05-01

A new publishing paradigm is needed to cope with the deluge of data artifacts produced by data-intensive science, many of which are vital to data re-use and verification of published scientific conclusions. Due to the limitations of traditional publishing, most of these artifacts are not usually disseminated, cited, or preserved. At the California Digital Library (CDL), one promising approach to the problem is to wrap these artifacts in the metaphor of a "data paper", assigning and managing data citations with our EZID (easy-eye-dee) identifier service. A data paper is a somewhat unfamiliar bundle of scholarly output with a familiar facade: minimally, a set of links to archived artifacts and a cover sheet containing familiar elements such as title, authors, date, abstract, and persistent identifier _ just enough to create basic citations, build "overlay journals", and enable discovery of data by internet search engines. Over time, we expect to add elements that permit deeper domain-specific discovery and re-use, such as variable names, methods, etc. At the same time, for data and identifiers that we manage, we will leverage as much domain-agnosticism data and identifier as possible.

The first initiative of DNA barcoding of ornamental plants from Egypt and potential applications in horticulture industry.

Science.gov (United States)

O Elansary, Hosam; Ashfaq, Muhammad; Ali, Hayssam M; Yessoufou, Kowiyou

2017-01-01

DNA barcoding relies on short and standardized gene regions to identify species. The agricultural and horticultural applications of barcoding such as for marketplace regulation and copyright protection remain poorly explored. This study examines the effectiveness of the standard plant barcode markers (matK and rbcL) for the identification of plant species in private and public nurseries in northern Egypt. These two markers were sequenced from 225 specimens of 161 species and 62 plant families of horticultural importance. The sequence recovery was similar for rbcL (96.4%) and matK (84%), but the number of specimens assigned correctly to the respective genera and species was lower for rbcL (75% and 29%) than matK (85% and 40%). The combination of rbcL and matK brought the number of correct generic and species assignments to 83.4% and 40%, respectively. Individually, the efficiency of both markers varied among different plant families; for example, all palm specimens (Arecaceae) were correctly assigned to species while only one individual of Asteraceae was correctly assigned to species. Further, barcodes reliably assigned ornamental horticultural and medicinal plants correctly to genus while they showed a lower or no success in assigning these plants to species and cultivars. For future, we recommend the combination of a complementary barcode (e.g. ITS or trnH-psbA) with rbcL + matK to increase the performance of taxa identification. By aiding species identification of horticultural crops and ornamental palms, the analysis of the barcode regions will have large impact on horticultural industry.

New evidence for the age and palaeoecology of the Knysna formation, South Africa

Energy Technology Data Exchange (ETDEWEB)

Carr, A.S.; Boom, A.; Dunajko, A.; Bateman, M.D.; Holmes, P.J.; Berrio, J.C. [University of Leicester, Leicester (United Kingdom). Dept. of Geology

2010-09-15

The existence of lignitic deposits (Knysna Formation) on the South African south coast, near to the town of Knysna has been recognised for more than a century. We present a new suite of chronological, geochemical and palynological data obtained from a recently identified lignite exposure in this area. The lignite pollen assemblage is dominated by palms (Arecaceae), which are now locally extinct, and contains additional palynomorphs of tropical affinity, along with (moist-temperate) Podocarpus-type pollen, grasses, and herbaceous pollen types (e.g. Cliffortia-type, Asteraceae). Overall, the assemblage shows some commonalities with the Miocene Elandsfontein Formation in the Western Cape. The lignites are dominated by a diverse range of higher plant biomarkers, including abundant leaf wax lipids, as well as lignin monomers and leaf cuticle-derived macromolecular organic matter. All strongly indicate a terrestrial depositional setting, perhaps akin to contemporary palm swamps. A number of sesquiterpenoids imply the presence of gymnosperms, supporting observations from the pollen data and previously reported macro-fossil finds. The application of isothermal thermoluminescence techniques to coversands overlying the lignite produced a minimum age of similar to 1.7 Ma. Additional clues as to the likely age of the lignite are provided by compound-specific stable carbon isotope analyses of the leaf wax lipids. From this, an age post-dating the Oligocene may be inferred, and in conjunction with the site's geomorphic setting, an age post dating the middle Miocene is considered plausible. This is markedly younger than previous (Eocene) age estimates for the Knynsa Formation.

Two statistics for evaluating parameter identifiability and error reduction

Science.gov (United States)

Doherty, John; Hunt, Randall J.

2009-01-01

Two statistics are presented that can be used to rank input parameters utilized by a model in terms of their relative identifiability based on a given or possible future calibration dataset. Identifiability is defined here as the capability of model calibration to constrain parameters used by a model. Both statistics require that the sensitivity of each model parameter be calculated for each model output for which there are actual or presumed field measurements. Singular value decomposition (SVD) of the weighted sensitivity matrix is then undertaken to quantify the relation between the parameters and observations that, in turn, allows selection of calibration solution and null spaces spanned by unit orthogonal vectors. The first statistic presented, "parameter identifiability", is quantitatively defined as the direction cosine between a parameter and its projection onto the calibration solution space. This varies between zero and one, with zero indicating complete non-identifiability and one indicating complete identifiability. The second statistic, "relative error reduction", indicates the extent to which the calibration process reduces error in estimation of a parameter from its pre-calibration level where its value must be assigned purely on the basis of prior expert knowledge. This is more sophisticated than identifiability, in that it takes greater account of the noise associated with the calibration dataset. Like identifiability, it has a maximum value of one (which can only be achieved if there is no measurement noise). Conceptually it can fall to zero; and even below zero if a calibration problem is poorly posed. An example, based on a coupled groundwater/surface-water model, is included that demonstrates the utility of the statistics. ?? 2009 Elsevier B.V.

Identifying High Performance ERP Projects

OpenAIRE

Stensrud, Erik; Myrtveit, Ingunn

2002-01-01

Learning from high performance projects is crucial for software process improvement. Therefore, we need to identify outstanding projects that may serve as role models. It is common to measure productivity as an indicator of performance. It is vital that productivity measurements deal correctly with variable returns to scale and multivariate data. Software projects generally exhibit variable returns to scale, and the output from ERP projects is multivariate. We propose to use Data Envelopment ...

Fungi identify the geographic origin of dust samples.

Directory of Open Access Journals (Sweden)

Neal S Grantham

Full Text Available There is a long history of archaeologists and forensic scientists using pollen found in a dust sample to identify its geographic origin or history. Such palynological approaches have important limitations as they require time-consuming identification of pollen grains, a priori knowledge of plant species distributions, and a sufficient diversity of pollen types to permit spatial or temporal identification. We demonstrate an alternative approach based on DNA sequencing analyses of the fungal diversity found in dust samples. Using nearly 1,000 dust samples collected from across the continental U.S., our analyses identify up to 40,000 fungal taxa from these samples, many of which exhibit a high degree of geographic endemism. We develop a statistical learning algorithm via discriminant analysis that exploits this geographic endemicity in the fungal diversity to correctly identify samples to within a few hundred kilometers of their geographic origin with high probability. In addition, our statistical approach provides a measure of certainty for each prediction, in contrast with current palynology methods that are almost always based on expert opinion and devoid of statistical inference. Fungal taxa found in dust samples can therefore be used to identify the origin of that dust and, more importantly, we can quantify our degree of certainty that a sample originated in a particular place. This work opens up a new approach to forensic biology that could be used by scientists to identify the origin of dust or soil samples found on objects, clothing, or archaeological artifacts.

Communication difficulties in children identified with psychiatric problems

OpenAIRE

Helland, Wenche Andersen

2010-01-01

Several studies have pointed to an overlap between different developmental psychopathological conditions and language impairments, and difficulties with communication have been identified in children of various diagnostic backgrounds. This thesis is based on three empirical studies, and the purposes are to investigate communication difficulties as reported by parents, in children identified with psychiatric problems as well as to evaluate a Norwegian adaptation of the Children’...

Body linear traits for identifying prolific goats

Directory of Open Access Journals (Sweden)

Avijit Haldar

2014-12-01

Full Text Available Aim: The present study was conducted on prolific goat breed to identify body linear type traits that might be associated with prolificacy trait in goats. Materials and Methods: Two-stage stratified random sample survey based data were collected from 1427 non-pregnant goats with the history of single, twin and triplet litter sizes (LZ between January 2008 to February 2011 for 3 years in 68 villages located in East and North East India. Data on sixteen body linear traits were analyzed using logistic regression model to do the step-wise selection for identifying the body linear traits that could determine LZ. An average value for each identified body linear trait was determined for classifying the goats into three categories: Goats having the history of single LZ, goats having the history of twin LZ and goats having the history of triplet LZ. Results: The LZ proportions for single, twin and triplet, were 29.50, 59.14 and 11.36%, respectively, with the prolificacy rate of 181.85% in Indian Black Bengal goats. A total of eight body linear traits that could determine LZ in prolific goats were identified. Heart girth (HG measurement (>60.90 cm, paunch girth (PG (>70.22 cm, wither height (WH (>49.75 cm, neck length (>21.45 cm, ear length (>12.80 cm and distance between trochanter major (DTM bones (>12.28 cm, pelvic triangle area (PTA (>572.25 cm2 and clearance at udder (CU (>23.16 cm showed an increase likelihood of multiple LZ when compared to single LZ. Further, HG measurement (>62.29 cm, WH (>50.54 cm, PG (>71.85 cm and ear length (>13.00 cm, neck length (>22.01 cm, PTA (>589.64 cm2, CU (>23.20 cm and DTM bones (>12.47 cm were associated with increased likelihood of triplet LZ, when compared with that of twin LZ. Conclusion: HG measurement was the best discriminating factor, while PG, neck length, DTM bones, CU, PTA, WH and ear length measurements were other important factors that could be used for identifying prolific goats to achieve economic

Persistent Identifiers, Discoverability and Open Science (Communication)

Science.gov (United States)

Murphy, Fiona; Lehnert, Kerstin; Hanson, Brooks

2016-04-01

Early in 2016, the American Geophysical Union announced it was incorporating ORCIDs into its submission workflows. This was accompanied by a strong statement supporting the use of other persistent identifiers - such as IGSNs, and the CrossRef open registry 'funding data'. This was partly in response to funders' desire to track and manage their outputs. However the more compelling argument, and the reason why the AGU has also signed up to the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines (http://cos.io/top), is that ultimately science and scientists will be the richer for these initiatives due to increased opportunities for interoperability, reproduceability and accreditation. The AGU has appealed to the wider community to engage with these initiatives, recognising that - unlike the introduction of Digital Object Identifiers (DOIs) for articles by CrossRef - full, enriched use of persistent identifiers throughout the scientific process requires buy-in from a range of scholarly communications stakeholders. At the same time, across the general research landscape, initiatives such as Project CRediT (contributor roles taxonomy), Publons (reviewer acknowledgements) and the forthcoming CrossRef DOI Event Tracker are contributing to our understanding and accreditation of contributions and impact. More specifically for earth science and scientists, the cross-functional Coalition for Publishing Data in the Earth and Space Sciences (COPDESS) was formed in October 2014 and is working to 'provide an organizational framework for Earth and space science publishers and data facilities to jointly implement and promote common policies and procedures for the publication and citation of data across Earth Science journals'. Clearly, the judicious integration of standards, registries and persistent identifiers such as ORCIDs and International Geo Sample Numbers (IGSNs) to the research and research output processes is key to the success of this venture

Identifying organizational deficiencies through root-cause analysis

International Nuclear Information System (INIS)

Tuli, R.W.; Apostolakis, G.E.

1996-01-01

All nuclear power plants incorporate root-cause analysis as an instrument to help identify and isolate key factors judged to be of significance following an incident or accident. Identifying the principal deficiencies can become very difficult when the event involves not only human and machine interaction, but possibly the underlying safety and quality culture of the organization. The current state of root-cause analysis is to conclude the investigation after identifying human and/or hardware failures. In this work, root-cause analysis is taken one step further by examining plant work processes and organizational factors. This extension is considered significant to the success of the analysis, especially when management deficiency is believed to contribute to the incident. The results of root-cause analysis can be most effectively implemented if the organization, as a whole, wishes to improve the overall operation of the plant by preventing similar incidents from occurring again. The study adds to the existing root-cause analysis the ability to localize the causes of undesirable events and to focus on those problems hidden deeply within the work processes that are routinely followed in the operation and maintenance of the facility

25 CFR 170.149 - How do tribes identify transit needs?

Science.gov (United States)

2010-04-01

... 25 Indians 1 2010-04-01 2010-04-01 false How do tribes identify transit needs? 170.149 Section 170... ROADS PROGRAM Indian Reservation Roads Program Policy and Eligibility Transit Facilities § 170.149 How do tribes identify transit needs? Tribes identify transit needs during the tribal transportation...

5 CFR 2604.202 - Index identifying information for the public.

Science.gov (United States)

2010-01-01

... 5 Administrative Personnel 3 2010-01-01 2010-01-01 false Index identifying information for the... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.202 Index identifying information for the public. (a) The Office of Government Ethics will...

IDENTIFYING DEMENTIA IN ELDERLY POPULATION : A CAMP APPROACH

OpenAIRE

Anand P; Chaukimath; Srikanth; Koli

2015-01-01

BACKGROUND: Dementia is an emerging medico social problem affecting elderly, and poses a challenge to clinician and caregivers. It is usually identified in late stage where management becomes difficult. AIM: The aim of camp was to identify dementia in elderly population participating in screening camp. MATERIAL AND METHODS : The geriatric clinic and department of psychiatry jointly organised screening camp to detect dementia in elderly for five days in Sept...

IDGenerator: unique identifier generator for epidemiologic or clinical studies

Directory of Open Access Journals (Sweden)

Matthias Olden

2016-09-01

Full Text Available Abstract Background Creating study identifiers and assigning them to study participants is an important feature in epidemiologic studies, ensuring the consistency and privacy of the study data. The numbering system for identifiers needs to be random within certain number constraints, to carry extensions coding for organizational information, or to contain multiple layers of numbers per participant to diversify data access. Available software can generate globally-unique identifiers, but identifier-creating tools meeting the special needs of epidemiological studies are lacking. We have thus set out to develop a software program to generate IDs for epidemiological or clinical studies. Results Our software IDGenerator creates unique identifiers that not only carry a random identifier for a study participant, but also support the creation of structured IDs, where organizational information is coded into the ID directly. This may include study center (for multicenter-studies, study track (for studies with diversified study programs, or study visit (baseline, follow-up, regularly repeated visits. Our software can be used to add a check digit to the ID to minimize data entry errors. It facilitates the generation of IDs in batches and the creation of layered IDs (personal data ID, study data ID, temporary ID, external data ID to ensure a high standard of data privacy. The software is supported by a user-friendly graphic interface that enables the generation of IDs in both standard text and barcode 128B format. Conclusion Our software IDGenerator can create identifiers meeting the specific needs for epidemiologic or clinical studies to facilitate study organization and data privacy. IDGenerator is freeware under the GNU General Public License version 3; a Windows port and the source code can be downloaded at the Open Science Framework website: https://osf.io/urs2g/ .

Guidelines for identifying suspect/counterfeit material

Energy Technology Data Exchange (ETDEWEB)

NONE

1995-09-01

These guidelines are intended to assist users of products in identifying: substandard, misrepresented, or fraudulently marked items. The guidelines provide information about such topics as: precautions, inspection and testing, dispositioning identified items, installed inspection and reporting suspect/counterfeit materials. These guidelines apply to users who are developing procurement documents, product acceptance/verification methods, company procedures, work instructions, etc. The intent of these SM guidelines in relation to the Quality Assurance Program Description (QAPD) and implementing company Management Control Procedures is not to substitute or replace existing requirements, as defined in either the QAPD or company implementing instructions (Management Control Procedures). Instead, the guidelines are intended to provide a consolidated source of information addressing the issue of Suspect/Counterfeit materials. These guidelines provide an extensive suspect component listing and suspect indications listing. Users can quickly check their suspect items against the list of manufacturers products (i.e., type, LD. number, and nameplate information) by consulting either of these listings.

Experiences of female partners of masculine-identifying trans persons.

Science.gov (United States)

Theron, Liesl; Collier, Kate L

2013-01-01

This paper explores the intimate relationship experiences of the cisgender (i.e., not transgender) female partners of masculine-identifying transgender persons, with a particular focus on these partners' self-understanding of their sexual orientation. Limited research about this topic has been conducted to date. Semi-structured interviews were conducted with eight South African women who are or have been cisgender female partners of masculine-identifying trans persons. Although the interviews showed that the relationship experiences of female partners of masculine-identifying trans persons are diverse, several common themes emerged in the narratives. The way that participants labelled their sexual orientation did not change from before to after their relationship with a transgender partner. The participants reported varied family and community responses to their relationships. Specific emotional and informational support needs for women with transgender partners were identified.

Identifying fish diversity hot-spots in data-poor situations.

Science.gov (United States)

Fonseca, Vinícius Prado; Pennino, Maria Grazia; de Nóbrega, Marcelo Francisco; Oliveira, Jorge Eduardo Lins; de Figueiredo Mendes, Liana

2017-08-01

One of the more challenging tasks in Marine Spatial Planning (MSP) is identifying critical areas for management and conservation of fish stocks. However, this objective is difficult to achieve in data-poor situations with different sources of uncertainty. In the present study we propose a combination of hierarchical Bayesian spatial models and remotely sensed estimates of environmental variables to be used as flexible and reliable statistical tools to identify and map fish species richness and abundance hot-spots. Results show higher species aggregates in areas with higher sea floor rugosity and habitat complexity, and identify clear richness hot-spots. Our findings identify sensitive habitats through essential and easy-to-use interpretation tools, such as predictive maps, which can contribute to improving management and operability of the studied data-poor situations. Copyright © 2017 Elsevier Ltd. All rights reserved.

A Modified Delphi to Identify the Significant Works Pertaining to the Understanding of Reading Comprehension and Content Analysis of the Identified Works

Science.gov (United States)

Zunker, Norma D.; Pearce, Daniel L.

2012-01-01

The first part of this study explored the significant works pertaining to the understanding of reading comprehension using a Modified Delphi Method. A panel of reading comprehension experts identified 19 works they considered to be significant to the understanding of reading comprehension. The panel of experts identified the reasons they…

Preserving medical correctness, readability and consistency in de-identified health records

DEFF Research Database (Denmark)

Pantazos, Kostas; Lauesen, Søren; Lippert, Søren

2016-01-01

A health record database contains structured data fields that identify the patient, such as patient ID, patient name, e-mail and phone number. These data are fairly easy to de-identify, that is, replace with other identifiers. However, these data also occur in fields with doctors’ free-text notes...... database, ending up with 323,122 patient health records. We had to invent many methods for de-identifying potential identifiers in the free-text notes. The de-identified health records should be used with caution for statistical purposes because we removed health records that were so special...

Identifying the Transgender Population in the Medicare Program

Science.gov (United States)

Proctor, Kimberly; Haffer, Samuel C.; Ewald, Erin; Hodge, Carla; James, Cara V.

2016-01-01

Abstract Purpose: To identify and describe the transgender population in the Medicare program using administrative data. Methods: Using a combination of International Classification of Diseases ninth edition (ICD-9) codes relating to transsexualism and gender identity disorder, we analyzed 100% of the 2013 Centers for Medicare & Medicaid Services (CMS) Medicare Fee-For-Service (FFS) “final action” claims from both institutional and noninstitutional providers (∼1 billion claims) to identify individuals who may be transgender Medicare beneficiaries. To confirm, we developed and applied a multistage validation process. Results: Four thousand ninety-eight transgender beneficiaries were identified, of which ∼90% had confirmatory diagnoses, billing codes, or evidence of a hormone prescription. In general, the racial, ethnic, and geographic distribution of the Medicare transgender population tends to reflect the broader Medicare population. However, age, original entitlement status, and disease burden of the transgender population appear substantially different. Conclusions: Using a variety of claims information, ranging from claims history to additional diagnoses, billing modifiers, and hormone prescriptions, we demonstrate that administrative data provide a valuable resource for identifying a lower bound of the Medicare transgender population. In addition, we provide a baseline description of the diversity and disease burden of the population and a framework for future research. PMID:28861539

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

DEFF Research Database (Denmark)

McMurry, Julie A; Juty, Nick; Blomberg, Niklas

2017-01-01

, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.......In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers...

Diagnostic tools for identifying sleepy drivers in the field.

Science.gov (United States)

2013-05-06

The overarching goal of this project was to identify and evaluate cognitive and behavioral indices that are sensitive to sleep : deprivation and may help identify commercial motor vehicle drivers (CMV) who are at-risk for driving in a sleep deprived ...

Problems Identifying Independent and Dependent Variables

Science.gov (United States)

Leatham, Keith R.

2012-01-01

This paper discusses one step from the scientific method--that of identifying independent and dependent variables--from both scientific and mathematical perspectives. It begins by analyzing an episode from a middle school mathematics classroom that illustrates the need for students and teachers alike to develop a robust understanding of…

Which functional unit to identify sustainable foods?

Science.gov (United States)

Masset, Gabriel; Vieux, Florent; Darmon, Nicole

2015-09-01

In life-cycle assessment, the functional unit defines the unit for calculation of environmental indicators. The objective of the present study was to assess the influence of two functional units, 100 g and 100 kcal (420 kJ), on the associations between three dimensions for identifying sustainable foods, namely environmental impact (via greenhouse gas emissions (GHGE)), nutritional quality (using two distinct nutrient profiling systems) and price. GHGE and price data were collected for individual foods, and were each expressed per 100 g and per 100 kcal. Two nutrient profiling models, SAIN,LIM and UK Ofcom, were used to assess foods' nutritional quality. Spearman correlations were used to assess associations between variables. Sustainable foods were identified as those having more favourable values for all three dimensions. The French Individual and National Dietary Survey (INCA2), 2006-2007. Three hundred and seventy-three foods highly consumed in INCA2, covering 65 % of total energy intake of adult participants. When GHGE and price were expressed per 100 g, low-GHGE foods had a lower price and higher SAIN,LIM and Ofcom scores (r=0·59, -0·34 and -0·43, respectively), suggesting a compatibility between the three dimensions; 101 and 100 sustainable foods were identified with SAIN,LIM and Ofcom, respectively. When GHGE and price were expressed per 100 kcal, low-GHGE foods had a lower price but also lower SAIN,LIM and Ofcom scores (r=0·67, 0·51 and 0·47, respectively), suggesting that more environment-friendly foods were less expensive but also less healthy; thirty-four sustainable foods were identified with both SAIN,LIM and Ofcom. The choice of functional unit strongly influenced the compatibility between the sustainability dimensions and the identification of sustainable foods.

Identifying individual fires from satellite-derived burned area data

CSIR Research Space (South Africa)

Archibald, S

2009-07-01

Full Text Available An algorithm for identifying individual fires from the Modis burned area data product is introduced for southern Africa. This algorithm gives the date of burning, size of fire, and location of the centroid for all fires identified over 8 years...

7 CFR 632.52 - Identifying typical classes of action.

Science.gov (United States)

2010-01-01

... § 632.52 Identifying typical classes of action. (a) The RFO will analyze the environmental assessment of....12. These actions are determined by a limited environmental assessment that reasonably identifies the... 632.52 Agriculture Regulations of the Department of Agriculture (Continued) NATURAL RESOURCES...

Application of artificial neural network to identify nuclear materials

International Nuclear Information System (INIS)

Xu Peng; Wang Zhe; Li Tiantuo

2005-01-01

Applying the neutral network, the article studied the technology of identifying the gamma spectra of the nuclear material in the nuclear components. In the article, theory of the network identifying the spectra is described, and the results of identification of gamma spectra are given.(authors)

Metabolites of cannabidiol identified in human urine.

Science.gov (United States)

Harvey, D J; Mechoulam, R

1990-03-01

1. Urine from a dystonic patient treated with cannabidiol (CBD) was examined by g.l.c.-mass spectrometry for CBD metabolites. Metabolites were identified as their trimethylsilyl (TMS), [2H9]TMS, and methyl ester/TMS derivatives and as the TMS derivatives of the product of lithium aluminium deuteride reduction. 2. Thirty-three metabolites were identified in addition to unmetabolized CBD, and a further four metabolites were partially characterized. 3. The major metabolic route was hydroxylation and oxidation at C-7 followed by further hydroxylation in the pentyl and propenyl groups to give 1"-, 2"-, 3"-, 4"- and 10-hydroxy derivatives of CBD-7-oic acid. Other metabolites, mainly acids, were formed by beta-oxidation and related biotransformations from the pentyl side-chain and these were also hydroxylated at C-6 or C-7. The major oxidized metabolite was CBD-7-oic acid containing a hydroxyethyl side-chain. 4. Two 8,9-dihydroxy compounds, presumably derived from the corresponding epoxide were identified. 5. Also present were several cyclized cannabinoids including delta-6- and delta-1-tetrahydrocannabinol and cannabinol. 6. This is the first metabolic study of CBD in humans; most observed metabolic routes were typical of those found for CBD and related cannabinoids in other species.

Identifying risk event in Indonesian fresh meat supply chain

Science.gov (United States)

Wahyuni, H. C.; Vanany, I.; Ciptomulyono, U.

2018-04-01

The aim of this paper is to identify risk issues in Indonesian fresh meat supply chain from the farm until to the “plate”. The critical points for food safety in physical fresh meat product flow are also identified. The paper employed one case study in the Indonesian fresh meat company by conducting observations and in-depth three stages of interviews. At the first interview, the players, process, and activities in the fresh meat industry were identified. In the second interview, critical points for food safety were recognized. The risk events in each player and process were identified in the last interview. The research will be conducted in three stages, but this article focuses on risk identification process (first stage) only. The second stage is measuring risk and the third stage focuses on determining the value of risk priority. The results showed that there were four players in the fresh meat supply chain: livestock (source), slaughter (make), distributor and retail (deliver). Each player has different activities and identified 16 risk events in the fresh meat supply chain. Some of the strategies that can be used to reduce the occurrence of such risks include improving the ability of laborers on food safety systems, improving cutting equipment and distribution processes

Use of DNA barcodes to identify flowering plants

OpenAIRE

Kress, W. John; Wurdack, Kenneth J.; Zimmer, Elizabeth A.; Weigt, Lee A.; Janzen, Daniel H.

2005-01-01

Methods for identifying species by using short orthologous DNA sequences, known as “DNA barcodes,” have been proposed and initiated to facilitate biodiversity studies, identify juveniles, associate sexes, and enhance forensic analyses. The cytochrome c oxidase 1 sequence, which has been found to be widely applicable in animal barcoding, is not appropriate for most species of plants because of a much slower rate of cytochrome c oxidase 1 gene evolution in higher plants than in animals. We ther...

Identifying high dose activities in industrial site radiography

International Nuclear Information System (INIS)

Heaton, B.

2000-01-01

Although the radiation doses received by industrial radiographers in the UK have progressively fallen over the last few years, with most now receiving less than 1 mSv/y, a few still receive, relative to the rest, much higher doses. As a percentage of all radiographers the number stays surprisingly constant from year to year. This paper describes a survey to identify the work causing these doses and suggest possible solutions. The UK Central Index of Dose Information was interrogated to identify the industrial radiography companies having staff (not necessarily the same person) with doses of greater than 5mSv/y in the last three years for which information was available. This was 15 in total. The people on the staff receiving these doses were identified and a questionnaire sent to the companies concerned requesting information about their work. A general questionnaire about the operation of the company was also included. With the agreement of the company these questionnaires were followed up by a visit to the company to interviews a number of the management and the radiographers if available. Both groups were generally very open about their problems and every discussion had a positive outcome. Several areas of work/reasons for the doses have been identified. These are: pipeline radiography, ultra sound radiographers working on nuclear reactors, complex plant work often with several teams in the area, inability to retreat from the wind out equipment due to height or access problems, site pressure to not follow the best practices and a lack of appreciation when a dose was being received or, alternatively, carelessness. Some o these problem areas are very difficult to resolve. However ways in which the Health and Safety can help influence the doses have been identified together with practical suggestions radiographers could adopt. These will be reported. (author)

Identifying Ethical Hypernorms for Accounting Educators

Science.gov (United States)

Siegel, Philip H.; Mintz, Steven; Naser-Tavakolian, Mohsen; O'Shaughnessy, John

2012-01-01

Accounting educators have a unique role in academe because students learn about codes of ethics that will guide their actions as professionals. We identify hypernorms related to internal auditing educators that reflect unethical behaviors believed to be universally unacceptable by that community. We then compare the results to a prior survey of…

An improved anti-leech mechanism based on session identifier

Science.gov (United States)

Zhang, Jianbiao; Zhu, Tong; Zhang, Han; Lin, Li

2012-01-01

With the rapid development of information technology and extensive requirement of network resource sharing, plenty of resource hotlinking phenomenons appear on the internet. The hotlinking problem not only harms the interests of legal websites but also leads to a great affection to fair internet environment. The anti-leech technique based on session identifier is highly secure, but the transmission of session identifier in plaintext form causes some security flaws. In this paper, a proxy hotlinking technique based on session identifier is introduced firstly to illustrate these security flaws; next, this paper proposes an improved anti-leech mechanism based on session identifier, the mechanism takes the random factor as the core and detects hotlinking request using a map table that contains random factor, user's information and time stamp; at last the paper analyzes the security of mechanism in theory. The result reveals that the improved mechanism has the merits of simple realization, high security and great flexibility.

Improvements in the Protein Identifier Cross-Reference service.

Science.gov (United States)

Wein, Samuel P; Côté, Richard G; Dumousseau, Marine; Reisinger, Florian; Hermjakob, Henning; Vizcaíno, Juan A

2012-07-01

The Protein Identifier Cross-Reference (PICR) service is a tool that allows users to map protein identifiers, protein sequences and gene identifiers across over 100 different source databases. PICR takes input through an interactive website as well as Representational State Transfer (REST) and Simple Object Access Protocol (SOAP) services. It returns the results as HTML pages, XLS and CSV files. It has been in production since 2007 and has been recently enhanced to add new functionality and increase the number of databases it covers. Protein subsequences can be Basic Local Alignment Search Tool (BLAST) against the UniProt Knowledgebase (UniProtKB) to provide an entry point to the standard PICR mapping algorithm. In addition, gene identifiers from UniProtKB and Ensembl can now be submitted as input or mapped to as output from PICR. We have also implemented a 'best-guess' mapping algorithm for UniProt. In this article, we describe the usefulness of PICR, how these changes have been implemented, and the corresponding additions to the web services. Finally, we explain that the number of source databases covered by PICR has increased from the initial 73 to the current 102. New resources include several new species-specific Ensembl databases as well as the Ensembl Genome ones. PICR can be accessed at http://www.ebi.ac.uk/Tools/picr/.

Identifying flares in rheumatoid arthritis

DEFF Research Database (Denmark)

Bykerk, Vivian P; Bingham, Clifton O; Choy, Ernest H

2016-01-01

to flare, with escalation planned in 61%. CONCLUSIONS: Flares are common in rheumatoid arthritis (RA) and are often preceded by treatment reductions. Patient/MD/DAS agreement of flare status is highest in patients worsening from R/LDA. OMERACT RA flare questions can discriminate between patients with...... Set. METHODS: Candidate flare questions and legacy measures were administered at consecutive visits to Canadian Early Arthritis Cohort (CATCH) patients between November 2011 and November 2014. The American College of Rheumatology (ACR) core set indicators were recorded. Concordance to identify flares...

Identifying Importance-Performance Matrix Analysis (IPMA) of ...

African Journals Online (AJOL)

Identifying Importance-Performance Matrix Analysis (IPMA) of intellectual capital and Islamic work ethics in Malaysian SMES. ... capital and Islamic work ethics significantly influenced business performance. ... AJOL African Journals Online.

Identifying intelligent Building Management Systems (BMS) in ...

African Journals Online (AJOL)

Identifying intelligent Building Management Systems (BMS) in sustainable housing. ... Journal of Fundamental and Applied Sciences ... attention to the principles of sustainability of energy and organized approach to sustainable development.

Identifying influential spreaders in interconnected networks

International Nuclear Information System (INIS)

Zhao, Dawei; Li, Lixiang; Huo, Yujia; Yang, Yixian; Li, Shudong

2014-01-01

Identifying the most influential spreaders in spreading dynamics is of the utmost importance for various purposes for understanding or controlling these processes. The existing relevant works are limited to a single network. Most real networks are actually not isolated, but typically coupled and affected by others. The properties of epidemic spreading have recently been found to have some significant differences in interconnected networks from those in a single network. In this paper, we focus on identifying the influential spreaders in interconnected networks. We find that the well-known k-shell index loses effectiveness; some insignificant spreaders in a single network become the influential spreaders in the whole interconnected networks while some influential spreaders become no longer important. The simulation results show that the spreading capabilities of the nodes not only depend on their influence for the network topology, but also are dramatically influenced by the spreading rate. Based on this perception, a novel index is proposed for measuring the influential spreaders in interconnected networks. We then support the efficiency of this index with numerical simulations. (paper)

Novel lipid constituents identified in seeds of Nigella sativa (Linn)

International Nuclear Information System (INIS)

Mehta, B.K.; Verma, Manjul; Gupta, Meenal

2008-01-01

Novel lipids were isolated from the unsaponifiable matter extracted from seeds of Nigella sativa Linn by using n-hexane. The new dienoate and two monoesters were the new lipids identified by spectral (IR, 1 H- and 13 C-NMR spectra, mass spectrum, elemental analysis) and chemical analysis. The dienoate (1) was identified as methylnonadeca-15,17-dienoate and two monoesters were identified as pentyl hexadec-12-enoate (2) and pentyl pentadec-11-enoate (3). Linoleic acid, oleic acid, β-sitosterol and stigmasterol were identified as part of the lipid structures. All compounds exhibited moderate activity against Staphylococcus aureus and poor activity against shigella spp, and Klebsiella pneumoniae. (author)

Novel lipid constituents identified in seeds of Nigella sativa (Linn)

Energy Technology Data Exchange (ETDEWEB)

Mehta, B.K.; Verma, Manjul; Gupta, Meenal [Vikram University (India). School of Studies in Chemistry and Biochemistry]. E-mail: bkmehta11@yahoo.com

2008-07-01

Novel lipids were isolated from the unsaponifiable matter extracted from seeds of Nigella sativa Linn by using n-hexane. The new dienoate and two monoesters were the new lipids identified by spectral (IR, {sup 1}H- and {sup 13}C-NMR spectra, mass spectrum, elemental analysis) and chemical analysis. The dienoate (1) was identified as methylnonadeca-15,17-dienoate and two monoesters were identified as pentyl hexadec-12-enoate (2) and pentyl pentadec-11-enoate (3). Linoleic acid, oleic acid, {beta}-sitosterol and stigmasterol were identified as part of the lipid structures. All compounds exhibited moderate activity against Staphylococcus aureus and poor activity against shigella spp, and Klebsiella pneumoniae. (author)

Identifying child abuse through text mining and machine learning

NARCIS (Netherlands)

Amrit, Chintan; Paauw, Tim; Aly, Robin; Lavric, Miha

2017-01-01

In this paper, we describe how we used text mining and analysis to identify and predict cases of child abuse in a public health institution. Such institutions in the Netherlands try to identify and prevent different kinds of abuse. A significant part of the medical data that the institutions have on

An Application Of Receptor Modeling To Identify Airborne Particulate ...

African Journals Online (AJOL)

An Application Of Receptor Modeling To Identify Airborne Particulate Sources In Lagos, Nigeria. FS Olise, OK Owoade, HB Olaniyi. Abstract. There have been no clear demarcations between industrial and residential areas of Lagos with focus on industry as the major source. There is need to identify potential source types in ...

Identifying a K-10 Developmental Framework for Teaching Philosophy

Science.gov (United States)

Poulton, Janette

2014-01-01

The intention of the study was to identify predictable opportunities for teachers to scaffold middle year students' philosophical learning. Such opportunities were identified in terms of students' readiness to learn certain behaviours in the context of a "community of inquiry". Thus it was hoped that the project would provide a useful…

Preserving Privacy by De-identifying Facial Images

National Research Council Canada - National Science Library

Newton, Elaine; Sweeney, Latanya; Malin, Bradley

2003-01-01

.... A trivial solution to de-identifying faces involves blacking out each face. This thwarts any possible face recognition, but because all facial details are obscured, the result is of limited use...

Identifying Opportunities for Vertical Integration of Biochemistry and Clinical Medicine.

Science.gov (United States)

Wendelberger, Karen J.; Burke, Rebecca; Haas, Arthur L.; Harenwattananon, Marisa; Simpson, Deborah

1998-01-01

Objectives: Retention of basic science knowledge, as judged by National Board of Medical Examiners' (NBME) data, suffers due to lack of apparent relevance and isolation of instruction from clinical application, especially in biochemistry. However, the literature reveals no systematic process for identifying key biochemical concepts and associated clinical conditions. This study systematically identified difficult biochemical concepts and their common clinical conditions as a critical step towards enhancing relevance and retention of biochemistry.Methods: A multi-step/ multiple stakeholder process was used to: (1) identify important biochemistry concepts; (2) determine students' perceptions of concept difficulty; (3) assess biochemistry faculty, student, and clinical teaching scholars' perceived relevance of identified concepts; and (4) identify associated common clinical conditions for relevant and difficult concepts. Surveys and a modified Delphi process were used to gather data, subsequently analyzed using SPSS for Windows.Results: Sixteen key biochemical concepts were identified. Second year medical students rated 14/16 concepts as extremely difficult while fourth year students rated nine concepts as moderately to extremely difficult. On average, each teaching scholar generated common clinical conditions for 6.2 of the 16 concepts, yielding a set of seven critical concepts and associated clinical conditions.Conclusions: Key stakeholders in the instructional process struggle to identify biochemistry concepts that are critical, difficult to learn and associated with common clinical conditions. However, through a systematic process beginning with identification of concepts and associated clinical conditions, relevance of basic science instruction can be enhanced.

ENU Mutagenesis in Mice Identifies Candidate Genes For Hypogonadism

Science.gov (United States)

Weiss, Jeffrey; Hurley, Lisa A.; Harris, Rebecca M.; Finlayson, Courtney; Tong, Minghan; Fisher, Lisa A.; Moran, Jennifer L.; Beier, David R.; Mason, Christopher; Jameson, J. Larry

2012-01-01

Genome-wide mutagenesis was performed in mice to identify candidate genes for male infertility, for which the predominant causes remain idiopathic. Mice were mutagenized using N-ethyl-N-nitrosourea (ENU), bred, and screened for phenotypes associated with the male urogenital system. Fifteen heritable lines were isolated and chromosomal loci were assigned using low density genome-wide SNP arrays. Ten of the fifteen lines were pursued further using higher resolution SNP analysis to narrow the candidate gene regions. Exon sequencing of candidate genes identified mutations in mice with cystic kidneys (Bicc1), cryptorchidism (Rxfp2), restricted germ cell deficiency (Plk4), and severe germ cell deficiency (Prdm9). In two other lines with severe hypogonadism candidate sequencing failed to identify mutations, suggesting defects in genes with previously undocumented roles in gonadal function. These genomic intervals were sequenced in their entirety and a candidate mutation was identified in SnrpE in one of the two lines. The line harboring the SnrpE variant retains substantial spermatogenesis despite small testis size, an unusual phenotype. In addition to the reproductive defects, heritable phenotypes were observed in mice with ataxia (Myo5a), tremors (Pmp22), growth retardation (unknown gene), and hydrocephalus (unknown gene). These results demonstrate that the ENU screen is an effective tool for identifying potential causes of male infertility. PMID:22258617

Sparse Linear Identifiable Multivariate Modeling

DEFF Research Database (Denmark)

Henao, Ricardo; Winther, Ole

2011-01-01

and bench-marked on artificial and real biological data sets. SLIM is closest in spirit to LiNGAM (Shimizu et al., 2006), but differs substantially in inference, Bayesian network structure learning and model comparison. Experimentally, SLIM performs equally well or better than LiNGAM with comparable......In this paper we consider sparse and identifiable linear latent variable (factor) and linear Bayesian network models for parsimonious analysis of multivariate data. We propose a computationally efficient method for joint parameter and model inference, and model comparison. It consists of a fully...

20 Years of persistent identifiers - Which systems are here to stay?

Science.gov (United States)

Klump, Jens; Huber, Robert; Lehnert, Kerstin

2016-04-01

Web-based persistent identifiers have been around for more than 20 years, a period long enough to start observing patterns of success and failure. Persistent identifiers were invented to address challenges arising from the distributed and disorganised nature of the internet, which not only allowed new technologies to emerge, it also made it difficult to maintain a persistent record of science. Persistent identifiers now allow unambiguous identification of resources on the net. The expectations were that persistent identifiers would lead to greater accessibility, transparency and reproducibility of research results. Over the past two decades a number of persistent identifier systems have been built, one of them being Digital Object Identifiers (DOI). While DOI were originally invented by the publishing industry, they quickly became an established way for the identification of research resources. At first, these resources referred to scholarly literature and related resources. Other identifier systems, some of them using DOI as an example, were developed as grass-roots efforts by the scientific community. The concept of using persistent identifiers has since been expanded to other, non-textual resources, like datasets (DOI, EPIC) and geological specimens (IGSN), and more recently to authors and contributors of scholarly works (ORCID), and to software and instruments. A common witticism states that "a great thing about standards is that there are so many to choose from." Setting up identifier systems is technically trivial. The real challenge lies in creating a governance system for the respective identifiers. Which systems will stand the test of time? Drawing on data from the Registry of Research Data Repositories (re3data.org) and our own experience in the field, this presentation looks at the history and adoption of existing identifier systems and how this gives us some indications towards factors influencing sustainability of these systems.

Identifying Broadband Rotational Spectra with Neural Networks

Science.gov (United States)

Zaleski, Daniel P.; Prozument, Kirill

2017-06-01

A typical broadband rotational spectrum may contain several thousand observable transitions, spanning many species. Identifying the individual spectra, particularly when the dynamic range reaches 1,000:1 or even 10,000:1, can be challenging. One approach is to apply automated fitting routines. In this approach, combinations of 3 transitions can be created to form a "triple", which allows fitting of the A, B, and C rotational constants in a Watson-type Hamiltonian. On a standard desktop computer, with a target molecule of interest, a typical AUTOFIT routine takes 2-12 hours depending on the spectral density. A new approach is to utilize machine learning to train a computer to recognize the patterns (frequency spacing and relative intensities) inherit in rotational spectra and to identify the individual spectra in a raw broadband rotational spectrum. Here, recurrent neural networks have been trained to identify different types of rotational spectra and classify them accordingly. Furthermore, early results in applying convolutional neural networks for spectral object recognition in broadband rotational spectra appear promising. Perez et al. "Broadband Fourier transform rotational spectroscopy for structure determination: The water heptamer." Chem. Phys. Lett., 2013, 571, 1-15. Seifert et al. "AUTOFIT, an Automated Fitting Tool for Broadband Rotational Spectra, and Applications to 1-Hexanal." J. Mol. Spectrosc., 2015, 312, 13-21. Bishop. "Neural networks for pattern recognition." Oxford university press, 1995.

Identifying web usage behavior of bank customers

Science.gov (United States)

Araya, Sandro; Silva, Mariano; Weber, Richard

2002-03-01

The bank Banco Credito e Inversiones (BCI) started its virtual bank in 1996 and its registered customers perform currently more than 10,000 Internet transactions daily, which typically cause les than 10% of traditional transaction costs. Since most of the customers are still not registered for online banking, one of the goals of the virtual bank is to increase then umber of registered customers. Objective of the presented work was to identify customers who are likely to perform online banking but still do not use this medium for their transactions. This objective has been reached by determining profiles of registered customers who perform many transactions online. Based on these profiles the bank's Data Warehouse is explored for twins of these heavy users that are still not registered for online banking. We applied clustering in order to group the registered customers into five classes. One of these classes contained almost 30% of all registered customers and could clearly be identified as class of heavy users. Next a neural network assigned online customers to the previously found five classes. Applying the network trained on online customers to all the bank customers identified twins of heavy users that, however had not performed online transactions so far. A mailing to these candidates informing about the advantages of online banking doubled the number of registrations compared to previous campaigns.

A Framework for Rigorously Identifying Research Gaps in Qualitative Literature Reviews

DEFF Research Database (Denmark)

Müller-Bloch, Christoph; Kranz, Johann

2015-01-01

Identifying research gaps is a fundamental goal of literature reviewing. While it is widely acknowledged that literature reviews should identify research gaps, there are no methodological guidelines for how to identify research gaps in qualitative literature reviews ensuring rigor and replicability....... Our study addresses this gap and proposes a framework that should help scholars in this endeavor without stifling creativity. To develop the framework we thoroughly analyze the state-of-the-art procedure of identifying research gaps in 40 recent literature reviews using a grounded theory approach....... Based on the data, we subsequently derive a framework for identifying research gaps in qualitative literature reviews and demonstrate its application with an example. Our results provide a modus operandi for identifying research gaps, thus enabling scholars to conduct literature reviews more rigorously...

Identifiable Data Files - Health Outcomes Survey (HOS)

Data.gov (United States)

U.S. Department of Health & Human Services — The Medicare Health Outcomes Survey (HOS) identifiable data files are comprised of the entire national sample for a given 2-year cohort (including both respondents...

Identifying Needs and Opportunities for Local Government ...

African Journals Online (AJOL)

4carolinebell@gmail.com

attainment of sustainable development goals and socio-ecological balance in ... However, policy and legislation fall short of identifying the range of a priori competences ..... the precautionary principle, risk identification, risk management and ...

Identifying significant environmental features using feature recognition.

Science.gov (United States)

2015-10-01

The Department of Environmental Analysis at the Kentucky Transportation Cabinet has expressed an interest in feature-recognition capability because it may help analysts identify environmentally sensitive features in the landscape, : including those r...

A de-identifier for medical discharge summaries.

Science.gov (United States)

Uzuner, Ozlem; Sibanda, Tawanda C; Luo, Yuan; Szolovits, Peter

2008-01-01

Clinical records contain significant medical information that can be useful to researchers in various disciplines. However, these records also contain personal health information (PHI) whose presence limits the use of the records outside of hospitals. The goal of de-identification is to remove all PHI from clinical records. This is a challenging task because many records contain foreign and misspelled PHI; they also contain PHI that are ambiguous with non-PHI. These complications are compounded by the linguistic characteristics of clinical records. For example, medical discharge summaries, which are studied in this paper, are characterized by fragmented, incomplete utterances and domain-specific language; they cannot be fully processed by tools designed for lay language. In this paper, we show that we can de-identify medical discharge summaries using a de-identifier, Stat De-id, based on support vector machines and local context (F-measure=97% on PHI). Our representation of local context aids de-identification even when PHI include out-of-vocabulary words and even when PHI are ambiguous with non-PHI within the same corpus. Comparison of Stat De-id with a rule-based approach shows that local context contributes more to de-identification than dictionaries combined with hand-tailored heuristics (F-measure=85%). Comparison with two well-known named entity recognition (NER) systems, SNoW (F-measure=94%) and IdentiFinder (F-measure=36%), on five representative corpora show that when the language of documents is fragmented, a system with a relatively thorough representation of local context can be a more effective de-identifier than systems that combine (relatively simpler) local context with global context. Comparison with a Conditional Random Field De-identifier (CRFD), which utilizes global context in addition to the local context of Stat De-id, confirms this finding (F-measure=88%) and establishes that strengthening the representation of local context may be more

Identifying causal linkages between environmental variables and African conflicts

Science.gov (United States)

Nguy-Robertson, A. L.; Dartevelle, S.

2017-12-01

Environmental variables that contribute to droughts, flooding, and other natural hazards are often identified as factors contributing to conflict; however, few studies attempt to quantify these causal linkages. Recent research has demonstrated that the environment operates within a dynamical system framework and the influence of variables can be identified from convergent cross mapping (CCM) between shadow manifolds. We propose to use CCM to identify causal linkages between environmental variables and incidences of conflict. This study utilizes time series data from Climate Forecast System ver. 2 and MODIS satellite sensors processed using Google Earth Engine to aggregate country and regional trends. These variables are then compared to Armed Conflict Location & Event Data Project observations at similar scales. Results provide relative rankings of variables and their linkage to conflict. Being able to identify which factors contributed more strongly to a conflict can allow policy makers to prepare solutions to mitigate future crises. Knowledge of the primary environmental factors can lead to the identification of other variables to examine in the causal network influencing conflict.

Nuclear techniques to identify allergenic metals in orthodontic brackets

International Nuclear Information System (INIS)

Zenobio, E.G.; Zenobio, M.A.F.; Menezes, M.A.B.C.

2009-01-01

The present study determines the elementary alloy composition of ten commercial brands of brackets, especially related to Ni, Cr, and Co metals, confirmed allergenic elements. The nuclear techniques applied in the analyses were X-ray fluorescence (XRF) - Centre National de la Recherche Scientifique, France (National Center of Scientific Research), and X-ray energy spectrometry (XRES), and Instrumental Neutron Activation Analysis (INAA) - CDTN/CNEN, Brazil. The XRES and XRF techniques identified Cr in the 10 samples analyzed and Ni in eight samples. The INAA technique identified the presence of Cr (14% to 19%) and Co (42% to 2400 ppm) in all samples. The semi-quantitative analysis performed by XRF also identified Co in two samples. The techniques were effective in the identification of metals in orthodontic brackets. The elements identified in this study can be considered one of the main reason for the allergic processes among the patients studied. This finding suggests that the patients should be tested for allergy and allergenic sensibility to metals prior to the prescription of orthodontic device. (author)

List identifies threatened ecosystems

Science.gov (United States)

Showstack, Randy

2012-09-01

The International Union for Conservation of Nature (IUCN) announced on 9 September that it will develop a new Red List of Ecosystems that will identify which ecosystems are vulnerable or endangered. The list, which is modeled on the group's Red List of Threatened Species™, could help to guide conservation activities and influence policy processes such as the Convention on Biological Diversity, according to the group. “We will assess the status of marine, terrestrial, freshwater, and subterranean ecosystems at local, regional, and global levels,” stated Jon Paul Rodriguez, leader of IUCN's Ecosystems Red List Thematic Group. “The assessment can then form the basis for concerted implementation action so that we can manage them sustainably if their risk of collapse is low or restore them if they are threatened and then monitor their recovery.”

Identifying the Universal part of TMDs

CERN Document Server

Van der Veken, F.F.

2016-01-01

We attempt to identify a path layout in the definition of transverse-momentum-dependent T-odd parton distribution functions (TMD)s which combines features of both, initial- and final-state interactions, so that it remains universal despite the fact that the Wilson lines entering such TMDs change their orientation. The generic structure of the quark correlator for this path layout is calculated.

Identifying particular places through experimental walking

Directory of Open Access Journals (Sweden)

Henrik Schultz

2016-11-01

Full Text Available Experimental walking can be used to identify particular places, design strategies and spatial visions for urban landscapes. Walking designers can explore sites and, in particular, their temporal dynamics and atmospheric particularities – both essential elements in making particular places. This article illustrates the benefits of this method, using the changing German city of Freiburg as an example.

Effectively identifying user profiles in network and host metrics

Science.gov (United States)

Murphy, John P.; Berk, Vincent H.; Gregorio-de Souza, Ian

2010-04-01

This work presents a collection of methods that is used to effectively identify users of computers systems based on their particular usage of the software and the network. Not only are we able to identify individual computer users by their behavioral patterns, we are also able to detect significant deviations in their typical computer usage over time, or compared to a group of their peers. For instance, most people have a small, and relatively unique selection of regularly visited websites, certain email services, daily work hours, and typical preferred applications for mandated tasks. We argue that these habitual patterns are sufficiently specific to identify fully anonymized network users. We demonstrate that with only a modest data collection capability, profiles of individual computer users can be constructed so as to uniquely identify a profiled user from among their peers. As time progresses and habits or circumstances change, the methods presented update each profile so that changes in user behavior can be reliably detected over both abrupt and gradual time frames, without losing the ability to identify the profiled user. The primary benefit of our methodology allows one to efficiently detect deviant behaviors, such as subverted user accounts, or organizational policy violations. Thanks to the relative robustness, these techniques can be used in scenarios with very diverse data collection capabilities, and data privacy requirements. In addition to behavioral change detection, the generated profiles can also be compared against pre-defined examples of known adversarial patterns.

Reproductive phenology of Mauritia flexuosa L. (Arecaceae in a coastal restinga environment in northeastern Brazil

Directory of Open Access Journals (Sweden)

F. N. Mendes

Full Text Available Abstract The buriti, Mauritia flexuosa, is the most common palm in Brazil, where it has considerable ecological and economic importance. However, few data are available on the phenology of the species, mainly in coastal restinga ecosystems. The present study monitored the reproductive phenology of M. flexuosa in the restinga of Barreirinhas, in the Brazilian Northeast, and investigated the relationship between phenophases and climatic variables. The presence/absence of flowers and fruits was recorded monthly in 25 individuals of each sex between August, 2009, and October, 2012. There was no difference in the phenology of male and female specimens, with flowering and fruiting occurring exclusively in the dry season. We believe that the specific abiotic characteristics of the study environment, such as the intense sunlight and availability of water in the soil, contribute to the reproductive success of M. flexuosa in the dry season, with consequent germination and establishment of seedlings occurring during the subsequent rainy season.

Aphandra natalia(Arecaceae – a little known source of piassaba fibers from the western Amazon

Directory of Open Access Journals (Sweden)

Mette Kronborg

2014-03-01

Full Text Available Aphandra natalia(Balslev & Henderson Barfod is a multipurpose palm that is exploited both commercially and for subsistence purposes. Its fibers are important in Peruvian and Ecuadorean broom industries and support many people economically. In Brazil, it is found in the western part of Acre, where it is the main source for a local broom market. Data from fieldwork in Peru (2007 suggests that the variation in gross profit per kilogram of fiber is considerable among the different segments in the broom industry. Harvesters and distributors earn negligible amounts of money whereas manufacturers reap of the major part of the earnings. Fiber extraction appears to be sustainable in Ecuador and in some parts of Peru, whereas in other parts of Peru unsustainable harvest occurs, involving felling of entire palm trees for the harvest of fibers. The same destructive extraction method is used in Brazil, where the palm is becoming rare in its natural distribution area.

High tropical net diversification drives the New World latitudinal gradient in palm (Arecaceae) species richness

DEFF Research Database (Denmark)

Svenning, J.-C.; Borchsenius, Finn; Bjorholm, Stine Wendelboe

2008-01-01

/temperature and water availability. These patterns therefore reflect net diversification at both deep and shallow levels in the phylogeny. Richness also increased with range in elevation, but this was only reflected in the MS/G pattern and therefore reflects recent diversification. Main conclusions The geographical......Aim Species richness exhibits striking geographical variation, but the processes that drive this variation are unresolved. We investigated the relative importance of two hypothesized evolutionary causes for the variation in palm species richness across the New World: time for diversification...

Reproductive phenology of Mauritia flexuosa L. (Arecaceae) in a coastal restinga environment in northeastern Brazil.

Science.gov (United States)

Mendes, F N; Valente, R M; Rêgo, M M C; Esposito, M C

2017-03-01

The buriti, Mauritia flexuosa, is the most common palm in Brazil, where it has considerable ecological and economic importance. However, few data are available on the phenology of the species, mainly in coastal restinga ecosystems. The present study monitored the reproductive phenology of M. flexuosa in the restinga of Barreirinhas, in the Brazilian Northeast, and investigated the relationship between phenophases and climatic variables. The presence/absence of flowers and fruits was recorded monthly in 25 individuals of each sex between August, 2009, and October, 2012. There was no difference in the phenology of male and female specimens, with flowering and fruiting occurring exclusively in the dry season. We believe that the specific abiotic characteristics of the study environment, such as the intense sunlight and availability of water in the soil, contribute to the reproductive success of M. flexuosa in the dry season, with consequent germination and establishment of seedlings occurring during the subsequent rainy season.

Studies on the Ecology, Biogeography and Evolution of Palms (Arecaceae) with Focus on the Americas

DEFF Research Database (Denmark)

Eiserhardt, Wolf L.

and evolutionary processes. These topics fall into four categories: (i) Previous empirical evidence on the factors influencing palm species distributions, community composition, and species richness was summarised in a hierarchical scale framework. The effects of different components of the abiotic environment......, biotic interactions, and dispersal are integrally dependent on spatiotemporal scale. Historical, including evolutionary factors are clearly important for palm distributions and diversity. (ii) Broad-scale patterns of palm species richness and phylogenetic turnover were studied across the Americas....... Richnessenvironment relationships were found to be spatially variable; richness-water correlations decreased in strength, and richness-energy correlations increased in strength with latitude, indicating complex and systematic interactions between factors. Evolutionary history has a significant impact on continental...

Identifiability of Additive Actuator and Sensor Faults by State Augmentation

Science.gov (United States)

Joshi, Suresh; Gonzalez, Oscar R.; Upchurch, Jason M.

2014-01-01

A class of fault detection and identification (FDI) methods for bias-type actuator and sensor faults is explored in detail from the point of view of fault identifiability. The methods use state augmentation along with banks of Kalman-Bucy filters for fault detection, fault pattern determination, and fault value estimation. A complete characterization of conditions for identifiability of bias-type actuator faults, sensor faults, and simultaneous actuator and sensor faults is presented. It is shown that FDI of simultaneous actuator and sensor faults is not possible using these methods when all sensors have unknown biases. The fault identifiability conditions are demonstrated via numerical examples. The analytical and numerical results indicate that caution must be exercised to ensure fault identifiability for different fault patterns when using such methods.

Identifying structural damage with ground penetrating radar

CSIR Research Space (South Africa)

Van Schoor, Abraham M

2008-07-01

Full Text Available Ground penetrating radar (GPR) and electrical resistance tomography (ERT) surveys were conducted in an urban environment in an attempt to identify the cause of severe structural damage to a historically significant residential property...

Measuring individual work performance: identifying and selecting indicators.

Science.gov (United States)

Koopmans, Linda; Bernaards, Claire M; Hildebrandt, Vincent H; de Vet, Henrica C W; van der Beek, Allard J

2014-01-01

Theoretically, individual work performance (IWP) can be divided into four dimensions: task performance, contextual performance, adaptive performance, and counterproductive work behavior. However, there is no consensus on the indicators used to measure these dimensions. This study was designed to (1) identify indicators for each dimension, (2) select the most relevant indicators, and (3) determine the relative weight of each dimension in ratings of work performance. IWP indicators were identified from multiple research disciplines, via literature, existing questionnaires, and expert interviews. Subsequently, experts selected the most relevant indicators per dimension and scored the relative weight of each dimension in ratings of IWP. In total, 128 unique indicators were identified. Twenty-three of these indicators were selected by experts as most relevant for measuring IWP. Task performance determined 36% of the work performance rating, while the other three dimensions respectively determined 22%, 20% and 21% of the rating. Notable consensus was found on relevant indicators of IWP, reducing the number from 128 to 23 relevant indicators. This provides an important step towards the development of a standardized, generic and short measurement instrument for assessing IWP.

Identifying, meeting, and assessing customer expectations

International Nuclear Information System (INIS)

Danner, T.A.

1995-01-01

Maintaining proficiency in carrying out mission goals is fundamental to the success of any organization. The definitive mission of the Waste Management and Remedial Action Division (WMRAD) of Oak Ridge National Laboratory (ORNL) is open-quotes to conduct waste management activities in a compliant, publicly acceptable, technically sound, and cost-efficient mannerclose quotes. In order to effectively fulfill this mission, must meet or exceed several standards in respect to our customers. These include: (1) identifying current and future customer expectations; (2) managing our relationships with our customers; (3) ensuring our commitment to our customers; and (4) measuring our success m customer satisfaction. Our customers have a great variety of requirements and expectations. Many of these are in the form of local, state, and federal regulations and environmental standards. Others are brought to our attention through inquires made to the Department of Energy (DOE).Consumer surveys have proven to be effective tools which have been used to make improvements, enhance certain program elements, and identify beneficial areas in already existing programs. In addition, national working groups, technology transfer meetings, and manager/contractor's meeting offer excellent opportunities to assess our activities

What is the Value Proposition of Persistent Identifiers?

Science.gov (United States)

Klump, Jens; Huber, Robert

2017-04-01

Persistent identifiers (PID) are widely used today in scientific communication and documentation. Global unique identification plus persistent resolution of links to referenced digital research objects have been strong selling points for PID Systems as enabling technical infrastructures. Novel applications of PID Systems in research now go beyond the identification of file based objects such as literature or data sets and include the identification of dynamically changing datasets accessed through web services, physical objects, persons and organisations. But not only do we see more use cases but also a proliferation of identifier systems. An analysis of PID Systems used by 1381 repositories listed in the Registry of Research Data Repositories (re3data.org, status of 14 Dec 2015) showed that many disciplinary data repositories make use of PID that are not among the systems promoted by the libraries and publishers (DOI, PURL, ARK). This indicates that a number of communities have developed their own PID Systems. This begs the question, do we need more identifier systems? What makes their value proposition more appealing than those of already existing systems? On the other hand, some of these new use cases deal with entities outside the digital domain, the original scope of application for PIDs. It is therefore necessary to critically appraise the value propositions of available PID Systems and compare these against the requirements of new use cases for PID. Undoubtedly, DOI are the most used persistent identifier in scholarly communication. It was originally designed "to link customers with publishers, facilitate electronic commerce, and enable copyright management systems." Today, the DOI system is described as providing "a technical and social infrastructure for the registration and use of persistent interoperable identifiers for use on digital networks". This example shows how value propositions can change over time. Additional value can be gained by cross

Identifying Differences in Cultural Behavior in Online Groups

Energy Technology Data Exchange (ETDEWEB)

Gregory, Michelle L.; Engel, David W.; Bell, Eric B.; Mcgrath, Liam R.

2012-07-23

We have developed methods to identify online communities, or groups, using a combination of structural information variables and content information variables from weblog posts and their comments to build a characteristic footprint for groups. We have worked with both explicitly connected groups and 'abstract' groups, in which the connection between individuals is in interest (as determined by content based features) and behavior (metadata based features) as opposed to explicit links. We find that these variables do a good job at identifying groups, placing members within a group, and helping determine the appropriate granularity for group boundaries. The group footprint can then be used to identify differences between the online groups. In the work described here we are interested in determining how an individual's online behavior is influenced by their membership in more than one group. For example, individuals belong to a certain culture; they may belong as well to a demographic group, and other 'chosen' groups such as churches or clubs. There is a plethora of evidence surrounding the culturally sensitive adoption, use, and behavior on the Internet. In this work we begin to investigate how culturally defined internet behaviors may influence behaviors of subgroups. We do this through a series of experiments in which we analyze the interaction between culturally defined behaviors and the behaviors of the subgroups. Our goal is to (a) identify if our features can capture cultural distinctions in internet use, and (b) determine what kinds of interaction there are between levels and types of groups.

Identifying airborne fungi in Seoul, Korea using metagenomics.

Science.gov (United States)

Oh, Seung-Yoon; Fong, Jonathan J; Park, Myung Soo; Chang, Limseok; Lim, Young Woon

2014-06-01

Fungal spores are widespread and common in the atmosphere. In this study, we use a metagenomic approach to study the fungal diversity in six total air samples collected from April to May 2012 in Seoul, Korea. This springtime period is important in Korea because of the peak in fungal spore concentration and Asian dust storms, although the year of this study (2012) was unique in that were no major Asian dust events. Clustering sequences for operational taxonomic unit (OTU) identification recovered 1,266 unique OTUs in the combined dataset, with between 223᾿96 OTUs present in individual samples. OTUs from three fungal phyla were identified. For Ascomycota, Davidiella (anamorph: Cladosporium) was the most common genus in all samples, often accounting for more than 50% of all sequences in a sample. Other common Ascomycota genera identified were Alternaria, Didymella, Khuskia, Geosmitha, Penicillium, and Aspergillus. While several Basidiomycota genera were observed, Chytridiomycota OTUs were only present in one sample. Consistency was observed within sampling days, but there was a large shift in species composition from Ascomycota dominant to Basidiomycota dominant in the middle of the sampling period. This marked change may have been caused by meteorological events. A potential set of 40 allergy-inducing genera were identified, accounting for a large proportion of the diversity present (22.5᾿7.2%). Our study identifies high fungal diversity and potentially high levels of fungal allergens in springtime air of Korea, and provides a good baseline for future comparisons with Asian dust storms.

Identifying specific interstellar polycyclic aromatic hydrocarbons

International Nuclear Information System (INIS)

Mulas, Giacomo; Malloci, Giuliano; Porceddu, Ignazio

2005-01-01

Interstellar Polycyclic Aromatic Hydrocarbons (PAHs) have been thought to be ubiquitous for more than twenty years, yet no single species in this class has been identified in the Interstellar Medium (ISM) to date. The unprecedented sensitivity and resolution of present Infrared Space Observatory (ISO) and forthcoming Herschel observations in the far infrared spectral range will offer a unique way out of this embarrassing impasse

Tuberculosis: Which patients do not identify their contacts?

Directory of Open Access Journals (Sweden)

J. Josaphat

2014-09-01

Full Text Available Setting: It is not known what the magnitude of non-identified TB contacts is in our country, or the reasons why contacts at risk are not identified. Objective: The purpose of this study was to analyze the determinants associated with non-identification of contacts. Design: This cross-sectional study included all cases of pulmonary tuberculosis diagnosed and treated in the Chest Disease Centre of Vila Nova de Gaia and their contacts, from 1st January to 31st December 2010. It included information collected from patients related to the identification of contacts in risk, and the information collected by the Public Health Unit during home, work and social places visits. Results: During the period of study, 61 cases of pulmonary TB were diagnosed: 41 cases (67.2% identified all their contacts and 20 cases (32.8% did not. 646 contacts were identified: 154 (23.8% were identified only by the Public Health Unit (mean age of 40.67, and 492 (76.2% were identified by the index cases (mean age of 33.25, (p = 0.001. A mean of 10.59 contacts were identified per index case, of which, 83 (19.3% screened positive. From those identified by the Public Health Unit, 10 (9.8% had LTBI and 5 (4.9% had active TB, and by the index case 61 (18.6% had LTBI and 7 (2.1% had active TB (crude OR = 1.52; CI = 0.83–2.79. The multivariate analysis showed that employment (adjusted OR = 4.82; 95%CI = 1.71–13.54 was associated to non-identification of contacts and patients preferably tended to identify relatives and co-habitants (adjusted OR = 0.22; 95%CI = 0.10–0.47. Conclusion: TB patients tend to identify relatives and co-habitant contacts; contact at place of employment was found to be an independent risk factor for not being identified. Resumo: Contexto: Não é conhecida a magnitude dos contactos de TB não identificados no nosso país, nem os motivos porque os contactos em risco não são identificados

Beyond basic citation—What to identify, when, and why

Science.gov (United States)

Parsons, M. A.

2015-12-01

Persistent identifiers (and locators) have emerged as a critical component in designing and implementing information systems and networks. This is especially evident in the use of the Digital Object Identifier in association with formal bibliographic citation of literature and increasingly of data sets. Indeed, the principles and methods of data citation have been a hot topic in the informatics community over the last decade or so. To date the focus has typically been on closely linking data sets to associated literature and generally emulating bibliographic-style citation. To design a sustainable, trusted data infrastructure, however, requires us to unambiguously reference many things in many ways, be they data, software, instruments, methods, or people. Design of this infrastructure also requires us to consider the entire data lifecycle and when important elements come into play and need to be identified. This paper will advocate an "ecological" model of data sharing that takes a more holistic perspective than many traditional data publication approaches. It will explore a variety of use cases around what elements of an information ecosystem need to be unambiguously identified and located, at what point in the data production process, and to what explicit purpose.

Monochromatic and identifiable photons used in photonuclear research

International Nuclear Information System (INIS)

Beil, Hans; Bergere, Roland.

1980-07-01

A general overview is given of the most common experimental procedures for the production and utilisation of monochromatic and (or) identifiable photon probes actually operational in 1979. Their basic characteristics, merits and drawbacks, together with their respective major domains of experimental physics to which they are usually applied, are also investigated. Methods for producing such monochromatic and (or) identifiable photon probes, with a continuously variable energy from a few MeV up till about 180 GeV, are treated in some detail. Some of the most promising future trends in the ulterior development of such electromagnetic probes are also mentioned

Almost-sure identifiability of multidimensional harmonic retrieval

NARCIS (Netherlands)

Jiang, T; Sidiropoulos, ND; ten Berge, JMF

Two-dimensional (2-D) and, more generally, multidimensional harmonic retrieval is of interest in a variety of applications, including transmitter localization and joint time and frequency offset estimation in wireless communications. The associated identifiability problem is key in understanding the

The Self in Movement: Being Identified and Identifying Oneself in the Process of Migration and Asylum Seeking.

Science.gov (United States)

Watzlawik, Meike; Brescó de Luna, Ignacio

2017-06-01

How migration influences the processes of identity development has been under longstanding scrutiny in the social sciences. Usually, stage models have been suggested, and different strategies for acculturation (e.g., integration, assimilation, separation, and marginalization) have been considered as ways to make sense of the psychological transformations of migrants as a group. On an individual level, however, identity development is a more complex endeavor: Identity does not just develop by itself, but is constructed as an ongoing process. To capture these processes, we will look at different aspects of migration and asylum seeking; for example, the cultural-specific values and expectations of the hosting (European) countries (e.g., as identifier), but also of the arriving individuals/groups (e.g., identified as refugees). Since the two may contradict each other, negotiations between identities claims and identity assignments become necessary. Ways to solve these contradictions are discussed, with a special focus on the experienced (and often missing) agency in different settings upon arrival in a new country. In addition, it will be shown how sudden events (e.g., 9/11, the Charlie Hebdo attack) may challenge identity processes in different ways.

Anti-schistosomal intervention targets identified by lifecycle transcriptomic analyses.

Directory of Open Access Journals (Sweden)

Jennifer M Fitzpatrick

2009-11-01

Full Text Available Novel methods to identify anthelmintic drug and vaccine targets are urgently needed, especially for those parasite species currently being controlled by singular, often limited strategies. A clearer understanding of the transcriptional components underpinning helminth development will enable identification of exploitable molecules essential for successful parasite/host interactions. Towards this end, we present a combinatorial, bioinformatics-led approach, employing both statistical and network analyses of transcriptomic data, for identifying new immunoprophylactic and therapeutic lead targets to combat schistosomiasis.Utilisation of a Schistosoma mansoni oligonucleotide DNA microarray consisting of 37,632 elements enabled gene expression profiling from 15 distinct parasite lifecycle stages, spanning three unique ecological niches. Statistical approaches of data analysis revealed differential expression of 973 gene products that minimally describe the three major characteristics of schistosome development: asexual processes within intermediate snail hosts, sexual maturation within definitive vertebrate hosts and sexual dimorphism amongst adult male and female worms. Furthermore, we identified a group of 338 constitutively expressed schistosome gene products (including 41 transcripts sharing no sequence similarity outside the Platyhelminthes, which are likely to be essential for schistosome lifecycle progression. While highly informative, statistics-led bioinformatics mining of the transcriptional dataset has limitations, including the inability to identify higher order relationships between differentially expressed transcripts and lifecycle stages. Network analysis, coupled to Gene Ontology enrichment investigations, facilitated a re-examination of the dataset and identified 387 clusters (containing 12,132 gene products displaying novel examples of developmentally regulated classes (including 294 schistosomula and/or adult transcripts with no

Family and academic performance: identifying high school student profiles

Directory of Open Access Journals (Sweden)

Alicia Aleli Chaparro Caso López

2016-01-01

Full Text Available The objective of this study was to identify profiles of high school students, based on variables related to academic performance, socioeconomic status, cultural capital and family organization. A total of 21,724 high school students, from the five municipalities of the state of Baja California, took part. A K-means cluster analysis was performed to identify the profiles. The analyses identified two clearly-defined clusters: Cluster 1 grouped together students with high academic performance and who achieved higher scores for socioeconomic status, cultural capital and family involvement, whereas Cluster 2 brought together students with low academic achievement, and who also obtained lower scores for socioeconomic status and cultural capital, and had less family involvement. It is concluded that the family variables analyzed form student profiles that can be related to academic achievement.

Identifying microRNA/mRNA dysregulations in ovarian cancer.

Science.gov (United States)

Miles, Gregory D; Seiler, Michael; Rodriguez, Lorna; Rajagopal, Gunaretnam; Bhanot, Gyan

2012-03-27

MicroRNAs are a class of noncoding RNA molecules that co-regulate the expression of multiple genes via mRNA transcript degradation or translation inhibition. Since they often target entire pathways, they may be better drug targets than genes or proteins. MicroRNAs are known to be dysregulated in many tumours and associated with aggressive or poor prognosis phenotypes. Since they regulate mRNA in a tissue specific manner, their functional mRNA targets are poorly understood. In previous work, we developed a method to identify direct mRNA targets of microRNA using patient matched microRNA/mRNA expression data using an anti-correlation signature. This method, applied to clear cell Renal Cell Carcinoma (ccRCC), revealed many new regulatory pathways compromised in ccRCC. In the present paper, we apply this method to identify dysregulated microRNA/mRNA mechanisms in ovarian cancer using data from The Cancer Genome Atlas (TCGA). TCGA Microarray data was normalized and samples whose class labels (tumour or normal) were ambiguous with respect to consensus ensemble K-Means clustering were removed. Significantly anti-correlated and correlated genes/microRNA differentially expressed between tumour and normal samples were identified. TargetScan was used to identify gene targets of microRNA. We identified novel microRNA/mRNA mechanisms in ovarian cancer. For example, the expression level of RAD51AP1 was found to be strongly anti-correlated with the expression of hsa-miR-140-3p, which was significantly down-regulated in the tumour samples. The anti-correlation signature was present separately in the tumour and normal samples, suggesting a direct causal dysregulation of RAD51AP1 by hsa-miR-140-3p in the ovary. Other pairs of potentially biological relevance include: hsa-miR-145/E2F3, hsa-miR-139-5p/TOP2A, and hsa-miR-133a/GCLC. We also identified sets of positively correlated microRNA/mRNA pairs that are most likely result from indirect regulatory mechanisms. Our findings identify

Improving applicant selection: identifying qualities of the unsuccessful otolaryngology resident.

Science.gov (United States)

Badran, Karam W; Kelley, Kanwar; Conderman, Christian; Mahboubi, Hossein; Armstrong, William B; Bhandarkar, Naveen D

2015-04-01

To identify the prevalence and management of problematic residents. Additionally, we hope to identify the factors associated with successful remediation of unsuccessful otolaryngology residents. Self-reported Internet and paper-based survey. An anonymous survey was distributed to 152 current and former program directors (PDs) in 2012. The factors associated with unsuccessful otolaryngology residents and those associated with the successful remediation of problematic residents were investigated. An unsuccessful resident is defined as one who quit or was removed from the program for any reason, or one whose actions resulted in criminal action or citation against their medical license after graduation from residency. Remediation is defined as an individualized program implemented to correct documented weaknesses. The overall response rate was 26% (40 PDs). Seventy-three unsuccessful or problematic residents were identified. Sixty-six problematic or unsuccessful residents were identified during residency, with 58 of 66 (88%) undergoing remediation. Thirty-one (47%) residents did not graduate. The most commonly identified factors of an unsuccessful resident were: change in specialty (21.5%), interpersonal and communication skills with health professionals (13.9%), and clinical judgment (10.1%). Characteristics of those residents who underwent successful remediation include: poor performance on in-training examination (17%, P otolaryngology PDs in this sample identified at least one unsuccessful resident. Improved methods of applicant screening may assist in optimizing otolaryngology resident selection. © 2014 The American Laryngological, Rhinological and Otological Society, Inc.

Modifiers of notch transcriptional activity identified by genome-wide RNAi

Directory of Open Access Journals (Sweden)

Firnhaber Christopher B

2010-10-01

Full Text Available Abstract Background The Notch signaling pathway regulates a diverse array of developmental processes, and aberrant Notch signaling can lead to diseases, including cancer. To obtain a more comprehensive understanding of the genetic network that integrates into Notch signaling, we performed a genome-wide RNAi screen in Drosophila cell culture to identify genes that modify Notch-dependent transcription. Results Employing complementary data analyses, we found 399 putative modifiers: 189 promoting and 210 antagonizing Notch activated transcription. These modifiers included several known Notch interactors, validating the robustness of the assay. Many novel modifiers were also identified, covering a range of cellular localizations from the extracellular matrix to the nucleus, as well as a large number of proteins with unknown function. Chromatin-modifying proteins represent a major class of genes identified, including histone deacetylase and demethylase complex components and other chromatin modifying, remodeling and replacement factors. A protein-protein interaction map of the Notch-dependent transcription modifiers revealed that a large number of the identified proteins interact physically with these core chromatin components. Conclusions The genome-wide RNAi screen identified many genes that can modulate Notch transcriptional output. A protein interaction map of the identified genes highlighted a network of chromatin-modifying enzymes and remodelers that regulate Notch transcription. Our results open new avenues to explore the mechanisms of Notch signal regulation and the integration of this pathway into diverse cellular processes.

Can a structured questionnaire identify patients with reduced renal function?

DEFF Research Database (Denmark)

Azzouz, Manal; Rømsing, Janne; Thomsen, Henrik

2014-01-01

To evaluate a structured questionnaire in identifying outpatients with renal dysfunction before MRI or CT in various age groups.......To evaluate a structured questionnaire in identifying outpatients with renal dysfunction before MRI or CT in various age groups....

Identifying Tracks Duplicates via Neural Network

CERN Document Server

Sunjerga, Antonio; CERN. Geneva. EP Department

2017-01-01

The goal of the project is to study feasibility of state of the art machine learning techniques in track reconstruction. Machine learning techniques provide promising ways to speed up the pattern recognition of tracks by adding more intelligence in the algorithms. Implementation of neural network to process of track duplicates identifying will be discussed. Different approaches are shown and results are compared to method that is currently in use.

Persistent Identifiers as Boundary Objects

Science.gov (United States)

Parsons, M. A.; Fox, P. A.

2017-12-01

In 1989, Leigh Star and Jim Griesemer defined the seminal concept of `boundary objects'. These `objects' are what Latour calls `immutable mobiles' that enable communication and collaboration across difference by helping meaning to be understood in different contexts. As Star notes, they are a sort of arrangement that allow different groups to work together without (a priori) consensus. Part of the idea is to recognize and allow for the `interpretive flexibility' that is central to much of the `constructivist' approach in the sociology of science. Persistent Identifiers (PIDs) can clearly act as boundary objects, but people do not usually assume that they enable interpretive flexibility. After all, they are meant to be unambiguous, machine-interpretable identifiers of defined artifacts. In this paper, we argue that PIDs can fill at least two roles: 1) That of the standardized form, where there is strong agreement on what is being represented and how and 2) that of the idealized type, a more conceptual concept that allows many different representations. We further argue that these seemingly abstract conceptions actually help us implement PIDs more effectively to link data, publications, various other artifacts, and especially people. Considering PIDs as boundary objects can help us address issues such as what level of granularity is necessary for PIDs, what metadata should be directly associated with PIDs, and what purpose is the PID serving (reference, provenance, credit, etc.). In short, sociological theory can improve data sharing standards and their implementation in a way that enables broad interdisciplinary data sharing and reuse. We will illustrate this with several specific examples of Earth science data.

A novel stroke locus identified in a northern Sweden pedigree

DEFF Research Database (Denmark)

Janunger, T.; Nilsson-Ardnor, S.; Wiklund, P.-G.

2009-01-01

OBJECTIVES: The population of northern Sweden is characterized by reduced genetic diversity and a high incidence of stroke. We sought to reduce genetic variation further, using genealogic analysis in a set of nuclear families affected by stroke, and we subsequently performed a genome-wide scan...... to identify novel stroke susceptibility loci. METHODS: Through genealogy, 7 nuclear families with a common ancestor, connected over 8 generations, were identified. A genome-wide scan using 449 microsatellite markers was performed with subsequent haplotype analyses. RESULTS: A maximum allele-sharing lod score...... of 4.81 on chromosome 9q31-q33 was detected. Haplotype analysis identified a common 2.2-megabase interval in the chromosomal region in 4 of the nuclear families, where an overrepresentation of intracerebral hemorrhage was observed. CONCLUSIONS: We have identified a novel susceptibility locus for stroke...

Teaching science students to identify entrepreneurial opportunities

NARCIS (Netherlands)

Nab, J.

2015-01-01

This dissertation describes a research project on teaching science students to identify entrepreneurial opportunities, which is a core competence for entrepreneurs that should be emphasized in education. This research consists of four studies. The first case study aims at finding design strategies

The Importance of identifiers: IWGSC Meeting 20170720

OpenAIRE

Haak, Laurel

2017-01-01

Presentation by Laure Haak at the 20 July 2017 meeting of the IWGSC, about use of identifiers in connecting researchers, funding, facilities, and publications. Description of approach and initial results of User Facilities and Publications Working Group, and applications for Scientific Collections.

The valuation of nursing begins with identifying value drivers.

Science.gov (United States)

Rutherford, Marcella M

2010-03-01

Adequate investment in a profession links to its ability to define and document its value. This requires identifying those elements or value drivers that demonstrate its worth. To completely identify nursing's value drivers requires meshing the economic, technical, and caring aspects of its profession. Nursing's valuation includes assessing nursing's tangible and intangible assets and documenting these assets. This information communicates nursing's worth and ensures adequate economic investment in its services.

Role of Pediatric Emergency Physicians in Identifying Bullying.

Science.gov (United States)

Waseem, Muhammad; Paul, Audrey; Schwartz, Gerald; Pauzé, Denis; Eakin, Paul; Barata, Isabel; Holtzman, Doug; Benjamin, Lee S; Wright, Joseph L; Nickerson, Amanda B; Joseph, Madeline

2017-02-01

Bullying is an important public health issue with broad implications. Although this issue has been studied extensively, there is limited emergency medicine literature addressing bullying. The emergency department (ED) physician has a unique opportunity to identify children and adolescents that are victims of bullying, and make a difference in their lives. Our aim is to discuss the role of the emergency physician (EP) in identifying patients who have been victims of bullying and how to provide effective management as well as referral for further resources. This document provides a framework for recognizing, stabilizing, and managing children who have experienced bullying. With the advent of social media, bullying behavior is not limited to in-person situations, and often occurs via electronic communication, further complicating recognition because it may not impart any physical harm to the child. Recognition of bullying requires a high level of suspicion, as patients may not offer this history. After the stabilization of any acute or overt indications of physical injury, along with obtaining a history of the mechanism of injury, the EP has the opportunity to identify the existence of bullying as the cause of the injury, and can address the issue in the ED while collaborating with "physician-extenders," such as social workers, toward identifying local resources for further support. The ED is an important arena for the assessment and management of children who have experienced bullying. It is imperative that EPs on the front lines of patient care address this public health epidemic. They have the opportunity to exert a positive impact on the lives of the children and families who are the victims of bullying. Copyright © 2016 Elsevier Inc. All rights reserved.

Fetal alcohol-spectrum disorders: identifying at-risk mothers

Directory of Open Access Journals (Sweden)

Montag AC

2016-07-01

Full Text Available Annika C Montag Department of Pediatrics, Division of Dysmorphology and Teratology, University of California San Diego, San Diego, CA, USA Abstract: Fetal alcohol-spectrum disorders (FASDs are a collection of physical and neuro­behavioral disabilities caused by prenatal exposure to alcohol. To prevent or mitigate the costly effects of FASD, we must identify mothers at risk for having a child with FASD, so that we may reach them with interventions. Identifying mothers at risk is beneficial at all time points, whether prior to pregnancy, during pregnancy, or following the birth of the child. In this review, three approaches to identifying mothers at risk are explored: using characteristics of the mother and her pregnancy, using laboratory biomarkers, and using self-report assessment of alcohol-consumption risk. At present, all approaches have serious limitations. Research is needed to improve the sensitivity and specificity of biomarkers and screening instruments, and to link them to outcomes as opposed to exposure. Universal self-report screening of all women of childbearing potential should ideally be incorporated into routine obstetric and gynecologic care, followed by brief interventions, including education and personalized feedback for all who consume alcohol, and referral to treatment as indicated. Effective biomarkers or combinations of biomarkers may be used during pregnancy and at birth to determine maternal and fetal alcohol exposure. The combination of self-report and biomarker screening may help identify a greater proportion of women at risk for having a child with FASD, allowing them to access information and treatment, and empowering them to make decisions that benefit their children. Keywords: fetal alcohol-spectrum disorder (FASD, alcohol, pregnancy, screening, biomarkers, SBIRT

Identifying structural variants using linked-read sequencing data.

Science.gov (United States)

Elyanow, Rebecca; Wu, Hsin-Ta; Raphael, Benjamin J

2017-11-03

Structural variation, including large deletions, duplications, inversions, translocations, and other rearrangements, is common in human and cancer genomes. A number of methods have been developed to identify structural variants from Illumina short-read sequencing data. However, reliable identification of structural variants remains challenging because many variants have breakpoints in repetitive regions of the genome and thus are difficult to identify with short reads. The recently developed linked-read sequencing technology from 10X Genomics combines a novel barcoding strategy with Illumina sequencing. This technology labels all reads that originate from a small number (~5-10) DNA molecules ~50Kbp in length with the same molecular barcode. These barcoded reads contain long-range sequence information that is advantageous for identification of structural variants. We present Novel Adjacency Identification with Barcoded Reads (NAIBR), an algorithm to identify structural variants in linked-read sequencing data. NAIBR predicts novel adjacencies in a individual genome resulting from structural variants using a probabilistic model that combines multiple signals in barcoded reads. We show that NAIBR outperforms several existing methods for structural variant identification - including two recent methods that also analyze linked-reads - on simulated sequencing data and 10X whole-genome sequencing data from the NA12878 human genome and the HCC1954 breast cancer cell line. Several of the novel somatic structural variants identified in HCC1954 overlap known cancer genes. Software is available at compbio.cs.brown.edu/software. braphael@princeton.edu. Supplementary data are available at Bioinformatics online. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Identifying Interbank Loans, Rates, and Claims Networks from Transactional Data

NARCIS (Netherlands)

Leon Rincon, C.E.; Cely, Jorge; Cadena, Carlos

2015-01-01

We identify interbank (i.e. non-collateralized) loans from the Colombian large-value payment system by implementing Furfine’s method. After identifying interbank loans from transactional data we obtain the interbank rates and claims without relying on financial institutions’ reported data.

Methods To Identify Aptamers against Cell Surface Biomarkers

Directory of Open Access Journals (Sweden)

Frédéric Ducongé

2011-09-01

Full Text Available Aptamers are nucleic acid-based ligands identified through a process of molecular evolution named SELEX (Systematic Evolution of Ligands by Exponential enrichment. During the last 10-15 years, numerous aptamers have been developed specifically against targets present on or associated with the surface of human cells or infectious pathogens such as viruses, bacteria, fungi or parasites. Several of the aptamers have been described as potent probes, rivalling antibodies, for use in flow cytometry or microscopy. Some have also been used as drugs by inhibiting or activating functions of their targets in a manner similar to neutralizing or agonistic antibodies. Additionally, it is straightforward to conjugate aptamers to other agents without losing their affinity and they have successfully been used in vitro and in vivo to deliver drugs, siRNA, nanoparticles or contrast agents to target cells. Hence, aptamers identified against cell surface biomarkers represent a promising class of ligands. This review presents the different strategies of SELEX that have been developed to identify aptamers for cell surface-associated proteins as well as some of the methods that are used to study their binding on living cells.

Identifiable images of bystanders extracted from corneal reflections.

Directory of Open Access Journals (Sweden)

Rob Jenkins

Full Text Available Criminal investigations often use photographic evidence to identify suspects. Here we combined robust face perception and high-resolution photography to mine face photographs for hidden information. By zooming in on high-resolution face photographs, we were able to recover images of unseen bystanders from reflections in the subjects' eyes. To establish whether these bystanders could be identified from the reflection images, we presented them as stimuli in a face matching task (Experiment 1. Accuracy in the face matching task was well above chance (50%, despite the unpromising source of the stimuli. Participants who were unfamiliar with the bystanders' faces (n = 16 performed at 71% accuracy [t(15 = 7.64, p<.0001, d = 1.91], and participants who were familiar with the faces (n = 16 performed at 84% accuracy [t(15 = 11.15, p<.0001, d = 2.79]. In a test of spontaneous recognition (Experiment 2, observers could reliably name a familiar face from an eye reflection image. For crimes in which the victims are photographed (e.g., hostage taking, child sex abuse, reflections in the eyes of the photographic subject could help to identify perpetrators.

A nonmusical paradigm for identifying absolute pitch possessors

Science.gov (United States)

Ross, David A.; Olson, Ingrid R.; Marks, Lawrence E.; Gore, John C.

2004-09-01

The ability to identify and reproduce sounds of specific frequencies is remarkable and uncommon. The etiology and defining characteristics of this skill, absolute pitch (AP), have been very controversial. One theory suggests that AP requires a specific type of early musical training and that the ability to encode and remember tones depends on these learned musical associations. An alternate theory argues that AP may be strongly dependent on hereditary factors and relatively independent of musical experience. To date, it has been difficult to test these hypotheses because all previous paradigms for identifying AP have required subjects to employ knowledge of musical nomenclature. As such, these tests are insensitive to the possibility of discovering AP in either nonmusicians or musicians of non-Western training. Based on previous literature in pitch memory, a paradigm is presented that is intended to distinguish between AP possessors and nonpossessors independent of the subjects' musical experience. The efficacy of this method is then tested with 20 classically defined AP possessors and 22 nonpossessors. Data from these groups strongly support the validity of the paradigm. The use of a nonmusical paradigm to identify AP may facilitate research into many aspects of this phenomenon.

Congenital Heart Diseases associated with Identified Syndromes ...

African Journals Online (AJOL)

Recognised syndromes were seen in 69(68%) cases. Down syndrome with 54 children contributed 78.3% of those with known syndromes. Other identified syndromes and associations were Marfan's, Noonan's, Edwards, Prune Belly, Apert, Ellis-van creveld syndrome and congenital rubella syndrome. Congenital heart ...

Identifying jet quantum numbers event by event

International Nuclear Information System (INIS)

Teper, M.J.

1979-12-01

A method is proposed to identify the parton that gives rise to any particular jet. The method improves with the number of particles in the jet, and should indicate which of the jets in a three jet event at PETRA is the gluon jet. (author)

Antibody Arrays Identify Potential Diagnostic Markers of Hepatocellular Carcinoma

Directory of Open Access Journals (Sweden)

Brian J. Peter

2008-01-01

Full Text Available Hepatocellular carcinoma (HCC is the third leading cause of cancer deaths worldwide. Effective treatment of HCC patients is hampered by the lack of sensitive and specific diagnostic markers of HCC. Alpha-fetoprotein (AFP, the currently used HCC marker, misses 30%–50% of HCC patients, who therefore remain undiagnosed and untreated. In order to identify novel diagnostic markers that can be used individually or in combination with AFP, we used an antibody array platform to detect the levels of candidate proteins in the plasma of HCC patients (n = 48 and patients with chronic hepatitis B or C viral infections (n = 19 (both of which are the major risk factors of HCC. We identified 7 proteins that significantly differentiate HCC patients from hepatitis patients (p < 0.05 (AFP, CTNNB, CSF1, SELL, IGFBP6, IL6R, and VCAM1.Importantly, we also identified 8 proteins that significantly differentiate HCC patients with ‘normal’ levels of AFP (<20 ng/ml from hepatitis patients (p < 0.05 (IL1RN, IFNG, CDKN1A, RETN, CXCL14, CTNNB, FGF2, and SELL. These markers are potentially important complementary markers to AFP. Using an independent immunoassay method in an independent group of 23 HCC patients and 22 hepatitis patients, we validated that plasma levels of CTNNB were significantly higher in the HCC group (p = 0.020. In conclusion, we used an antibody array platform to identify potential circulating diagnostic markers of HCC, some of which may be valuable when used in combination with AFP. The clinical utility of these newly identified HCC diagnostic markers needs to be systematically evaluated.

Ambiguity of non-systematic chemical identifiers within and between small-molecule databases.

Science.gov (United States)

Akhondi, Saber A; Muresan, Sorel; Williams, Antony J; Kors, Jan A

2015-01-01

A wide range of chemical compound databases are currently available for pharmaceutical research. To retrieve compound information, including structures, researchers can query these chemical databases using non-systematic identifiers. These are source-dependent identifiers (e.g., brand names, generic names), which are usually assigned to the compound at the point of registration. The correctness of non-systematic identifiers (i.e., whether an identifier matches the associated structure) can only be assessed manually, which is cumbersome, but it is possible to automatically check their ambiguity (i.e., whether an identifier matches more than one structure). In this study we have quantified the ambiguity of non-systematic identifiers within and between eight widely used chemical databases. We also studied the effect of chemical structure standardization on reducing the ambiguity of non-systematic identifiers. The ambiguity of non-systematic identifiers within databases varied from 0.1 to 15.2 % (median 2.5 %). Standardization reduced the ambiguity only to a small extent for most databases. A wide range of ambiguity existed for non-systematic identifiers that are shared between databases (17.7-60.2 %, median of 40.3 %). Removing stereochemistry information provided the largest reduction in ambiguity across databases (median reduction 13.7 percentage points). Ambiguity of non-systematic identifiers within chemical databases is generally low, but ambiguity of non-systematic identifiers that are shared between databases, is high. Chemical structure standardization reduces the ambiguity to a limited extent. Our findings can help to improve database integration, curation, and maintenance.

A method to identify aperiodic disturbances in the ionosphere

Science.gov (United States)

Wang, J.-S.; Chen, Z.; Huang, C.-M.

2014-05-01

In this paper, variations in the ionospheric F2 layer's critical frequency are decomposed into their periodic and aperiodic components. The latter include disturbances caused both by geophysical impacts on the ionosphere and random noise. The spectral whitening method (SWM), a signal-processing technique used in statistical estimation and/or detection, was used to identify aperiodic components in the ionosphere. The whitening algorithm adopted herein is used to divide the Fourier transform of the observed data series by a real envelope function. As a result, periodic components are suppressed and aperiodic components emerge as the dominant contributors. Application to a synthetic data set based on significant simulated periodic features of ionospheric observations containing artificial (and, hence, controllable) disturbances was used to validate the SWM for identification of aperiodic components. Although the random noise was somewhat enhanced by post-processing, the artificial disturbances could still be clearly identified. The SWM was then applied to real ionospheric observations. It was found to be more sensitive than the often-used monthly median method to identify geomagnetic effects. In addition, disturbances detected by the SWM were characterized by a Gaussian-type probability density function over all timescales, which further simplifies statistical analysis and suggests that the disturbances thus identified can be compared regardless of timescale.

Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing.

Science.gov (United States)

Li, Zhigang; Breitwieser, Florian P; Lu, Jennifer; Jun, Albert S; Asnaghi, Laura; Salzberg, Steven L; Eberhart, Charles G

2018-01-01

We test the ability of next-generation sequencing, combined with computational analysis, to identify a range of organisms causing infectious keratitis. This retrospective study evaluated 16 cases of infectious keratitis and four control corneas in formalin-fixed tissues from the pathology laboratory. Infectious cases also were analyzed in the microbiology laboratory using culture, polymerase chain reaction, and direct staining. Classified sequence reads were analyzed with two different metagenomics classification engines, Kraken and Centrifuge, and visualized using the Pavian software tool. Sequencing generated 20 to 46 million reads per sample. On average, 96% of the reads were classified as human, 0.3% corresponded to known vectors or contaminant sequences, 1.7% represented microbial sequences, and 2.4% could not be classified. The two computational strategies successfully identified the fungal, bacterial, and amoebal pathogens in most patients, including all four bacterial and mycobacterial cases, five of six fungal cases, three of three Acanthamoeba cases, and one of three herpetic keratitis cases. In several cases, additional potential pathogens also were identified. In one case with cytomegalovirus identified by Kraken and Centrifuge, the virus was confirmed by direct testing, while two where Staphylococcus aureus or cytomegalovirus were identified by Centrifuge but not Kraken could not be confirmed. Confirmation was not attempted for an additional three potential pathogens identified by Kraken and 11 identified by Centrifuge. Next generation sequencing combined with computational analysis can identify a wide range of pathogens in formalin-fixed corneal specimens, with potential applications in clinical diagnostics and research.

Identifying Factors for Worker Motivation in Zambia's Rural Health Facilities.

Science.gov (United States)

Cross, Samuel S; Baernholdt, Dr Marianne

2017-01-01

Within Zambia there is a shortage of health workers in rural areas. This study aims to identify motivating factors for retaining rural health workers. Sixty rural health workers completed surveys and 46 were interviewed. They rated the importance of six motivating factors and discussed these and other factors in interviews. An interview was conducted with a Government Human Resources Manager (HR Manager) to elicit contextual information. All six factors were identified as being very important motivators, as were two additional factors. Additional career training was identified by many as the most important factor. Comparison of results and the HR Manager interview revealed that workers lacked knowledge about opportunities and that the HR manager was aware of barriers to career development. The Zambian government might better motivate and retain rural health workers by offering them any combination of identified factors, and by addressing the barriers to career development.

Identifying Social Satisfaction from Social Media

OpenAIRE

Bai, Shuotian; Gao, Rui; Hao, Bibo; Yuan, Sha; Zhu, Tingshao

2014-01-01

We demonstrate the critical need to identify social situation and instability factors by acquiring public social satisfaction in this research. However, subject to the large amount of manual work cost in subject recruitment and data processing, conventional self-reported method cannot be implemented in real time or applied in large scale investigation. To solve the problem, this paper proposed an approach to predict users' social satisfaction, especially for the economy-related satisfaction b...

[Chemical composition of essential oils from leaves of Helicteres guazumifolia (Sterculiaceae), Piper tuberculatum (Piperaceae), Scoparia dulcis (Arecaceae) and Solanum subinerme (Solanaceae) from Sucre, Venezuela].

Science.gov (United States)

Ordaz, Gabriel; D'Armas, Haydelba; Yáñez, Dayanis; Moreno, Shailili

2011-06-01

Essential oils, biosynthesized and accumulated in aromatic plants, have a wide range of applications in the pharmaceutical health, cosmetics, food and agricultural industry. This study aimed to analyze the secondary metabolites in some plant species in order to contribute to their chemotaxonomy. Leaves from Helicteres guazumifolia, Piper tuberculatum, Scoparia dulcis and Solanum subinerme were collected and their essential oils were obtained by means of hydro-distillation. The oil fraction was analyzed and identified by GC/MS. The extraction yields were of 0.004, 0.032, 0.016 and 0.005%, and the oil constituents of 88.00, 89.80, 87.50 and 89.47%, respectively. The principal oils found were: non-terpenoids volatile secondary metabolites (30.28%) in H. guazumifolia; sesquiterpenoids (20.82 and 26.09%) and oxigen derivated (52.19 and 25.18%) in P. tuberculatum and S. dulcis; and oxigen diterpenoids (39.67%) in S. subinerme. The diisobuthylphtalate (13.11%) in H. guazumifolia, (-)-spathulenol (11.37%) in P. tuberculatum and trans-phytol (8.29 and 36.00%) in S. dulcis and S. subinerme, were the principal constituents in their respective essential oils. The diisooctylphtalate were the essential oil common to all species, but the volatile compounds such as trans-pinane, L-linalool, beta-ionone, isophytol, neophytadiene, trans-phytol, dibutylphtalate and methyl hexadecanoate, were only detected in three of these essences. This suggests that these plants may require similar secondary metabolites for their ecological interactions, possibly due to common environmental factors.

Development and evaluation of emulsifying systems of the material grease from Brazilian flora

Directory of Open Access Journals (Sweden)

Douglas Dourado

2015-10-01

Full Text Available Context: Oils and butter of seed from Brazilian biodiversity are extending the range of innovative products for cosmetics development. They have a fat potential similar to skin composition, leading to the improved performance of these product. Aims: Improve the emulsions spreadability through prior screening of grease composition and studying the viscosity, and the emulsions accelerated stability. Methods: Emulsions were formulated using oils from semiarid plants from Bahia: Syagrus coronate, Pachira retusa, and Pachira aquatica, so as to compare them with oils already standard in the production of cosmetics. Spreadability and stability tests were made comparing the results. The same criteria were used with Amazon seed butter: Virola surinamensis, Butyrospermum parkii, Astrocaryum murumuru, Theobroma cacao and Theobroma grandiflorum. For the emulsions screening and performance, a system was developed for oil/ butter, following tests of accelerated stability, viscosity, and spreadability. Results: The combined system of spreadability was optimized using screening. Emollients containing oleic and palmitic acids, and light chain fatty acids obtained good spreadability. The oil emulsion containing Pachira retusa and Virola surinamensis butter had a higher viscosity. Conclusions: With high content of fatty acids such as oleic, palmitic or the light chain fatty acids obtain an appropriated appearance, texture, and spreadability for cosmetic use. Thus, oils with a low fatty acid content may be combined with butter that have a high fatty acid content and vice-versa. Analyzing and strategically combining grease composition, one can optimize the performance of cosmetic formulations.

Protective Effects of Selected Botanical Agents on Bone

Directory of Open Access Journals (Sweden)

James Jam Jolly

2018-05-01

Full Text Available Osteoporosis is a serious health problem affecting more than 200 million elderly people worldwide. The early symptoms of this disease are hardly detectable. It causes progressive bone loss, which ultimately renders the patients susceptible to fractures. Osteoporosis must be prevented because the associated fragility fractures result in high morbidity, mortality, and healthcare costs. Many plants used in herbal medicine contain bioactive compounds possessing skeletal protective effects. This paper explores the anti-osteoporotic properties of selected herbal plants, including their actions on osteoblasts (bone forming cells, osteoclasts (bone resorbing cells, and bone remodelling. Some of the herbal plant families included in this review are Berberidaceae, Fabaceae, Arecaceae, Labiatae, Simaroubaceaea, and Myrsinaceae. Their active constituents, mechanisms of action, and pharmaceutical applications were discussed. The literature shows that very few herbal plants have undergone human clinical trials to evaluate their pharmacological effects on bone to date. Therefore, more intensive research should be performed on these plants to validate their anti-osteoporotic properties so that they can complement the currently available conventional drugs in the battle against osteoporosis.

American palms used for medicine, in the ethnobotanical and pharmacological publications

Directory of Open Access Journals (Sweden)

Joanna Sosnowska

2014-03-01

Full Text Available The center of diversity of palms (Arecaceae in tropical America is found in the Amazon basin and along the Panamanian isthmus.The greatest palm species richness has been reported for the Iquitos and Chocó areas. Many species of palms are used mainly for construction and due to their edible fruits. In addition, there are 104 palm species that are used for medicinal purposes in many regions of the Americas. Cocos nuciferaand Oenocarpus batauaare the most commonly used species for medicinal purposes. The fruit is the most commonly used part of palms for medicinal purposes (57 species. The traditional and medicinal use of plants has deep roots in indigenous communities of Latin America. The significance of ethnomedicine for health care of local populations can not be ignored anymore because it plays a significant role in basic health care in developing countries. Interdisciplinary research in antropology, ethnobotany and ethnopharmacology helps gather information on ethnomedicine and design new drugs for modern medicine. American palms are sources of useful bioactive compounds against diabetes, prostate hyperplasia and leishmaniasis.

Chemical characterization and antioxidant activity of Amazonian (Ecuador) Caryodendron orinocense Karst. and Bactris gasipaes Kunth seed oils.

Science.gov (United States)

Radice, Matteo; Viafara, Derwin; Neill, David; Asanza, Mercedes; Sacchetti, Gianni; Guerrini, Alessandra; Maietti, Silvia

2014-01-01

Nowadays, data concerning the composition of Caryodendron orinocense Karst. (Euphorbiaceae) and Bactris gasipaes Kunth (Arecaceae) seed oils are lacking. In light of this fact, in this paper fatty acids and unsaponifiable fraction composition have been determined using GC-MS, HPLC-DAD (Diode Array Detector), NMR approaches and possible future applications have been preliminary investigated through estimation of antioxidant activity, performed with DPPH test. For C. orinocense linoleic acid (85.59%) was the main component, lauric (33.29%) and myristic (27.76%) acids were instead the most abundant in B. gasipaes. C. orinocense unsaponifiable fraction (8.06%) evidenced a remarkable content of β-sitosterol, campesterol, stigmasterol, squalene and vitamin E (816 ppm). B. gasipaes revealed instead β-sitosterol and squalene as main constituents of unsaponifiable matter (3.01%). Antioxidant capacity evidenced the best performance of C. orinocense seed oil. These preliminary results could be interesting to suggest the improvement of the population's incomes from Amazonian basin. In particular the knowledge of chemical composition of C. orinocense and B. gasipaes oils could be helpful to divulge and valorize these autochthones plants.

Species delimitation in congenerics of Genus Daemonorops from India using DNA barcodes

Directory of Open Access Journals (Sweden)

Senthilkumar Umapathy

2014-10-01

Full Text Available Daemonorops is one of the largest genus of palms, widely distributed in tropical evergreen forests of South and Southeast Asia and especially abundant in peninsular Malaysia. It shares the phylogenetic clade with genus Calamus, but distinctly characterized by the presence of the prophyllar bracts in subtribe Calaminae of family Arecaceae (Palmae. However, the species of Daemonorops are highly variable and homoplasious in their morphological characters. Indian Daemonorops has six species, of which five distributed in Andaman group of islands and one in Indo-China. The study mainly focused on the species of Indo-Myanmar (Andaman Islands because they have showed uncertainty in their stand as distinct species. Hence it was attempted to test the species delimitation in congenerics using phylogenetic and character analysis of the nuclear genes. The study indicates three species of both Griffith and Beccari (D. jenkinsiana, D. manii, and D. kurziana in India, and another three species of Renuka et al. (D. wrightmyoensis, D. aurea, and D. rarispinosa from Andaman group of islands could be the variabilities of D. manii that is colonized throughout the archipelago.

Genomic Regions Affecting Cheese Making Properties Identified in Danish Holsteins

DEFF Research Database (Denmark)

Gregersen, Vivi Raundahl; Bertelsen, Henriette Pasgaard; Poulsen, Nina Aagaard

The cheese renneting process is affected by a number of factors associated to milk composition and a number of Danish Holsteins has previously been identified to have poor milk coagulation ability. Therefore, the aim of this study was to identify genomic regions affecting the technological...

Identifying Effectiveness Criteria for Internet Payment Systems.

Science.gov (United States)

Shon, Tae-Hwan; Swatman, Paula M. C.

1998-01-01

Examines Internet payment systems (IPS): third-party, card, secure Web server, electronic token, financial electronic data interchange (EDI), and micropayment based. Reports the results of a Delphi survey of experts identifying and classifying IPS effectiveness criteria and classifying types of IPS providers. Includes the survey invitation letter…

Structural identifiability of polynomial and rational systems

NARCIS (Netherlands)

J. Nemcová (Jana)

2010-01-01

htmlabstractSince analysis and simulation of biological phenomena require the availability of their fully specified models, one needs to be able to estimate unknown parameter values of the models. In this paper we deal with identifiability of parametrizations which is the property of one-to-one

Identifying Foods causing Allergies/ Intolerances among Diabetic ...

African Journals Online (AJOL)

Objective: This study was designed to identify the foods that caused allergies / intolerances and symptoms of reaction experienced by diabetic patients attending State Specialist Hospital, Akure. Materials and Methods: Ninety-eight diabetics aged 30-80 years (30 males and 68 females) were included in the study.

Identifying transposon insertions and their effects from RNA-sequencing data.

Science.gov (United States)

de Ruiter, Julian R; Kas, Sjors M; Schut, Eva; Adams, David J; Koudijs, Marco J; Wessels, Lodewyk F A; Jonkers, Jos

2017-07-07

Insertional mutagenesis using engineered transposons is a potent forward genetic screening technique used to identify cancer genes in mouse model systems. In the analysis of these screens, transposon insertion sites are typically identified by targeted DNA-sequencing and subsequently assigned to predicted target genes using heuristics. As such, these approaches provide no direct evidence that insertions actually affect their predicted targets or how transcripts of these genes are affected. To address this, we developed IM-Fusion, an approach that identifies insertion sites from gene-transposon fusions in standard single- and paired-end RNA-sequencing data. We demonstrate IM-Fusion on two separate transposon screens of 123 mammary tumors and 20 B-cell acute lymphoblastic leukemias, respectively. We show that IM-Fusion accurately identifies transposon insertions and their true target genes. Furthermore, by combining the identified insertion sites with expression quantification, we show that we can determine the effect of a transposon insertion on its target gene(s) and prioritize insertions that have a significant effect on expression. We expect that IM-Fusion will significantly enhance the accuracy of cancer gene discovery in forward genetic screens and provide initial insight into the biological effects of insertions on candidate cancer genes. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

How do Locals in Finland Identify Resident Foreigners

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Minna Säävälä

2008-01-01

Full Text Available This study examines the identi? cation by Finns of foreign residents in Finland by analyzing data from a representative sample survey carried out in 2002. When people were asked to name a group of foreigners residing in Finland, the majority ?rst mentioned Somalis, despite the fact that only 4 percent of foreign residents are Somali and 6 percent of foreign-language speakers speak Somali. The general tendency when identifying resident foreigners is to refer primarily to ethnic or national groups; references to status (e.g. refugee, return migrant, guest worker or religion (e.g. Muslim are rare in the survey. In terms of ethnicity, identifying foreign residents in Finland is inconsistent, particularly as Russians and Estonians, the two largest groups, are not readily seen as foreign residents. The prevalence of answering Somalis could be considered an outcome of the maximally visible difference between Finns and Somalis. A logistic regression analysis is used to examine whether identifying resident foreigners differs according to socio-economic and educational characteristics, age, gender, region, and attitude towards the number of resident foreigners in Finland. The variables that signi? cantly in? uence the probability of answering Somalis and Russians are the respondents region, age, attitude towards the number of foreign residents in Finland, and to some extent, gender and higher education. Respondents occupational status, vocational education or income does not have a signi? cant impact on the answers. Regional differences appear to be a major factor affecting how foreigners are identi? ed, which shows that although the need to consider resident foreigners as visibly, culturally and linguistically maximally different may be a nearly universal base line for creating difference and identity, identifying foreign residents in Finland is not entirely independent of demographic realities.

Identifying Creatively Gifted Students: Necessity of a Multi-Method Approach

Science.gov (United States)

Ambrose, Laura; Machek, Greg R.

2015-01-01

The process of identifying students as creatively gifted provides numerous challenges for educators. Although many schools assess for creativity in identifying students for gifted and talented services, the relationship between creativity and giftedness is often not fully understood. This article reviews commonly used methods of creativity…

Identifying Teaching Methods that Engage Entrepreneurship Students

Science.gov (United States)

Balan, Peter; Metcalfe, Mike

2012-01-01

Purpose: Entrepreneurship education particularly requires student engagement because of the complexity of the entrepreneurship process. The purpose of this paper is to describe how an established measure of engagement can be used to identify relevant teaching methods that could be used to engage any group of entrepreneurship students.…

Interchange. Program Improvement Products Identified through Networking.

Science.gov (United States)

Ohio State Univ., Columbus. National Center for Research in Vocational Education.

This catalog lists exemplary field-based program improvement products identified by the Dissemination and Utilization Products and Services Program (D&U) at the National Center for Research in Vocational Education. It is designed to increase awareness of these products among vocational educators and to provide information about them that…

A Study of Scientometric Methods to Identify Emerging Technologies

Energy Technology Data Exchange (ETDEWEB)

Abercrombie, Robert K [ORNL; Udoeyop, Akaninyene W [ORNL

2011-01-01

This work examines a scientometric model that tracks the emergence of an identified technology from initial discovery (via original scientific and conference literature), through critical discoveries (via original scientific, conference literature and patents), transitioning through Technology Readiness Levels (TRLs) and ultimately on to commercial application. During the period of innovation and technology transfer, the impact of scholarly works, patents and on-line web news sources are identified. As trends develop, currency of citations, collaboration indicators, and on-line news patterns are identified. The combinations of four distinct and separate searchable on-line networked sources (i.e., scholarly publications and citation, worldwide patents, news archives, and on-line mapping networks) are assembled to become one collective network (a dataset for analysis of relations). This established network becomes the basis from which to quickly analyze the temporal flow of activity (searchable events) for the example subject domain we investigated.

Rare copy number variants identified in prune belly syndrome.

Science.gov (United States)

Boghossian, Nansi S; Sicko, Robert J; Giannakou, Andreas; Dimopoulos, Aggeliki; Caggana, Michele; Tsai, Michael Y; Yeung, Edwina H; Pankratz, Nathan; Cole, Benjamin R; Romitti, Paul A; Browne, Marilyn L; Fan, Ruzong; Liu, Aiyi; Kay, Denise M; Mills, James L

2018-03-01

Prune belly syndrome (PBS), also known as Eagle-Barrett syndrome, is a rare congenital disorder characterized by absence or hypoplasia of the abdominal wall musculature, urinary tract anomalies, and cryptorchidism in males. The etiology of PBS is largely unresolved, but genetic factors are implicated given its recurrence in families. We examined cases of PBS to identify novel pathogenic copy number variants (CNVs). A total of 34 cases (30 males and 4 females) with PBS identified from all live births in New York State (1998-2005) were genotyped using Illumina HumanOmni2.5 microarrays. CNVs were prioritized if they were absent from in-house controls, encompassed ≥10 consecutive probes, were ≥20 Kb in size, had ≤20% overlap with common variants in population reference controls, and had ≤20% overlap with any variant previously detected in other birth defect phenotypes screened in our laboratory. We identified 17 candidate autosomal CNVs; 10 cases each had one CNV and four cases each had two CNVs. The CNVs included a 158 Kb duplication at 4q22 that overlaps the BMPR1B gene; duplications of different sizes carried by two cases in the intron of STIM1 gene; a 67 Kb duplication 202 Kb downstream of the NOG gene, and a 1.34 Mb deletion including the MYOCD gene. The identified rare CNVs spanned genes involved in mesodermal, muscle, and urinary tract development and differentiation, which might help in elucidating the genetic contribution to PBS. We did not have parental DNA and cannot identify whether these CNVs were de novo or inherited. Further research on these CNVs, particularly BMP signaling is warranted to elucidate the pathogenesis of PBS. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Radiological difficulty in identifying unicompartmental knee replacement dislocation

Directory of Open Access Journals (Sweden)

Mr Oruaro Adebayo Onibere, MBBS, MRCS

2017-09-01

Full Text Available Unicondylar knee replacement is a relatively common elective orthopedic procedure but is not often seen in the Emergency Department setting. Familiarity with normal clinical and radiological appearances is difficult to gain. Dislocation of the mobile bearing component “spacer” is a known complication of unicondylar knee replacements, and these patients will initially present to the accident and Emergency Department. In this setting, an accurate and prompt diagnosis is necessary to appropriately manage the patient's condition. There is normally a radiological challenge in identifying dislocated mobile bearings on plain radiographs. These patients may need to have further imaging, such as a computer tomographic scan to identify the dislocated mobile bearing.

Efforts to identify spore forming bacillus

Energy Technology Data Exchange (ETDEWEB)

Zuleiha, M.S.; Hilmy, N. (National Atomic Energy Agency, Jakarta (Indonesia). Pasar Djumat Research Centre)

1982-04-01

Efforts to identify 47 species of radioresistant spore forming bacillus sp. isolated from locally produced medical devices have been carried out. The identifications was conducted using 19 kinds of biochemical tests and compared to species to bacillus subtilis W. T.; bacillus pumilus E 601 and bacillus sphaericus Csub(I)A. The results showed that bacillus sp. examined could be divided into 6 groups, i.e. bacillus cereus; bacillus subtilis; bacillus stearothermophylus; bacillus coagulans; bacillus sphaericus and bacillus circulans.

Efforts to identify spore forming bacillus

International Nuclear Information System (INIS)

Zuleiha, M.S.; Hilmy, Nazly

1982-01-01

Efforts to identify 47 species of radioresistant spore forming bacillus sp. isolated from locally produced medical devices have been carried out. The identifications was conducted using 19 kinds of biochemical tests and compared to species to bacillus subtilis W. T.; bacillus pumilus E 601 and bacillus sphaericus Csub(I)A. The results showed that bacillus sp. examined could be divided into 6 groups, i.e. bacillus cereus; bacillus subtilis; bacillus stearothermophylus; bacillus coagulans; bacillus sphaericus and bacillus circulans. (author)

Identifying chiral bands in real nuclei

International Nuclear Information System (INIS)

Shirinda, O.; Lawrie, E.A.

2012-01-01

The application of the presently used fingerprints of chiral bands (originally derived for strongly broken chirality) is investigated for real chiral systems. In particular the chiral fingerprints concerning the B(M1) staggering patterns and the energy staggering are studied. It is found that both fingerprints show considerable changes for real chiral systems, a behaviour that creates a significant risk for misinterpretation of the experimental data and can lead to a failure to identify real chiral systems. (orig.)

Identifying and overcoming barriers to technology implementation

International Nuclear Information System (INIS)

Bailey, M.; Warren, S.; McCune, M.

1996-01-01

In a recent General Accounting Office report, the Department of Energy's (DOE) Office of Environmental Management was found to be ineffective in integrating their environmental technology development efforts with the cleanup actions. As a result of these findings, a study of remediation documents was performed by the Technology Applications Team within DOE's Office of Environmental Restoration (EM-40) to validate this finding and to understand why it was occurring. A second initiative built on the foundation of the remediation document study and evaluated solutions to the ineffective implementation of improved technologies. The Technology Applications Team examined over 50 remediation documents (17 projects) which included nearly 600 proposed remediation technologies. It was determined that very few technologies are reaching the Records of Decision documents. In fact, most are eliminated in the early stages of consideration. These observations stem from regulators' and stakeholders' uncertainties in cost and performance of the technology and the inability of the technology to meet site specific conditions. The Technology Applications Team also set out to identify and evaluate solutions to barriers to implementing innovative technology into the DOE's environmental management activities. Through the combined efforts of DOE and the Hazardous Waste Action Coalition (HWAC), a full day workshop was conducted at the annual HWAC meeting in June 1995 to solve barriers to innovative technology implementation. Three barriers were identified as widespread throughout the DOE complex and industry. Identified barriers included a lack of verified or certified cost and performance data for innovative technologies; risk of failure to reach cleanup goals using innovative technologies; and communication barriers that are present at virtually every stage of the characterization/remediation process from development through implementation

Parents of Youth Who Identify as Transgender: An Exploratory Study

Science.gov (United States)

Johnson, Danielle; Sikorski, Jonathon; Savage, Todd A.; Woitaszewski, Scott A.

2014-01-01

This article explores the experiences, perceptions, support systems, and coping strategies on which parents of youth who identify as transgender rely. Based on data gathered via interviews with parents of youth who identify as transgender and analyzed using the consensual qualitative research method, parental challenges and concerns about their…

Identifying trace evidence in data wiping application software

Directory of Open Access Journals (Sweden)

Gregory H. Carlton

2012-06-01

Full Text Available One area of particular concern for computer forensics examiners involves situations in which someone utilized software applications to destroy evidence. There are products available in the marketplace that are relatively inexpensive and advertised as being able to destroy targeted portions of data stored within a computer system. This study was undertaken to identify these tools and analyze them to determine the extent to which each of the evaluated data wiping applications perform their tasks and to identify trace evidence, if any, left behind on disk media after executing these applications. We evaluated five Windows 7 compatible software products whose advertised features include the ability for users to wipe targeted files, folders, or evidence of selected activities. We conducted a series of experiments that involved executing each application on systems with identical data, and we then analyzed the results and compared the before and after images for each application. We identified information for each application that is beneficial to forensics examiners when faced with similar situations. This paper describes our application selection process, our application evaluation methodology, and our findings. Following this, we describe limitations of this study and suggest areas of additional research that will benefit the study of digital forensics.

Identifying the Multiple Intelligences of Your Students

Science.gov (United States)

McClellan, Joyce A.; Conti, Gary J.

2008-01-01

One way of addressing individual differences among adult learners is to identify the Multiple Intelligences of the learner. Multiple Intelligences refers to the concept developed by Howard Gardner that challenges the traditional view of intelligence and explains the presence of nine different Multiple Intelligences. The purpose of this study was…

Transverse momentum distributions of identified particles produced ...

Indian Academy of Sciences (India)

We assume that the transverse momentum distributions of identified particles measured in final state are contributed by a few energy sources which can be regarded as partons or quarks in the interacting system. The particle is contributed by each source with gluons which have transverse momentum distributions in an ...

Identifying Core Concepts of Cybersecurity: Results of Two Delphi Processes

Science.gov (United States)

Parekh, Geet; DeLatte, David; Herman, Geoffrey L.; Oliva, Linda; Phatak, Dhananjay; Scheponik, Travis; Sherman, Alan T.

2018-01-01

This paper presents and analyzes results of two Delphi processes that polled cybersecurity experts to rate cybersecurity topics based on importance, difficulty, and timelessness. These ratings can be used to identify core concepts--cross-cutting ideas that connect knowledge in the discipline. The first Delphi process identified core concepts that…

An improved model for identifying influential bloggers on the web ...

African Journals Online (AJOL)

The benefits of achieving competitive advantages in a blog community by identify influential blogger have created several research gaps and the popularity of these services has make the problem of identifying the most influential bloggers noteworthy, since its solution can lead to major benefits for the users of this services ...

Identifying DNA Methylation Features that Underlie Prostate Cancer Disparities

Science.gov (United States)

2017-10-01

15.3%) NA 6 (6%) 6 (5.4%) Prostate - specific Antigen (PSA) ng/mL 76.7 (42.9) 78.2 (40.7) pTNM Stage T2 68 (67.3%) 48 (43.2%) T3 29 (28.7%) 58...Profiles Primary Aim #1: Determine if methylation profiles differ by race/ancestry Primary Aim #2: Identify ethnicity- specific markers of prostate ...by ethnicity and to identify ethnicity- specific methylation features of prostate cancer that could contribute the racial disparities that exist in

Altruistic behavior in cohesive social groups: The role of target identifiability.

Science.gov (United States)

Ritov, Ilana; Kogut, Tehila

2017-01-01

People's tendency to be more generous toward identifiable victims than toward unidentifiable or statistical victims is known as the Identifiable Victim Effect. Recent research has called the generality of this effect into question, showing that in cross-national contexts, identifiability mostly affects willingness to help victims of one's own "in-group." Furthermore, in inter-group conflict situations, identifiability increased generosity toward a member of the adversary group, but decreased generosity toward a member of one's own group. In the present research we examine the role of group-cohesiveness as an underlying factor accounting for these divergent findings. In particular, we examined novel groups generated in the lab, using the minimal group paradigm, as well as natural groups of students in regular exercise sections. Allocation decisions in dictator games revealed that a group's cohesiveness affects generosity toward in-group and out-group recipients differently, depending on their identifiability. In particular, in cohesive groups the identification of an in-group recipient decreased, rather than increased generosity.

Altruistic behavior in cohesive social groups: The role of target identifiability.

Directory of Open Access Journals (Sweden)

Ilana Ritov

Full Text Available People's tendency to be more generous toward identifiable victims than toward unidentifiable or statistical victims is known as the Identifiable Victim Effect. Recent research has called the generality of this effect into question, showing that in cross-national contexts, identifiability mostly affects willingness to help victims of one's own "in-group." Furthermore, in inter-group conflict situations, identifiability increased generosity toward a member of the adversary group, but decreased generosity toward a member of one's own group. In the present research we examine the role of group-cohesiveness as an underlying factor accounting for these divergent findings. In particular, we examined novel groups generated in the lab, using the minimal group paradigm, as well as natural groups of students in regular exercise sections. Allocation decisions in dictator games revealed that a group's cohesiveness affects generosity toward in-group and out-group recipients differently, depending on their identifiability. In particular, in cohesive groups the identification of an in-group recipient decreased, rather than increased generosity.

Moving Towards Sustainable Food Consumption : Identifying Barriers to Sustainable Student Diets

OpenAIRE

Ede, James; Graine, Sophia; Rhodes, Chris

2011-01-01

Adopting more sustainable consumption habits has been identified as a necessary step in the progression towards a sustainable society. In the area of sustainable consumption, personal food behaviour represents a strong leverage point. University students have been identified as a strategic audience; habits established during this transformative period can track forward into later life. This study seeks to identify the barriers inhibiting students from eating more sustainably. Perceived benefi...

Three novel approaches to structural identifiability analysis in mixed-effects models.

Science.gov (United States)

Janzén, David L I; Jirstrand, Mats; Chappell, Michael J; Evans, Neil D

2016-05-06

Structural identifiability is a concept that considers whether the structure of a model together with a set of input-output relations uniquely determines the model parameters. In the mathematical modelling of biological systems, structural identifiability is an important concept since biological interpretations are typically made from the parameter estimates. For a system defined by ordinary differential equations, several methods have been developed to analyse whether the model is structurally identifiable or otherwise. Another well-used modelling framework, which is particularly useful when the experimental data are sparsely sampled and the population variance is of interest, is mixed-effects modelling. However, established identifiability analysis techniques for ordinary differential equations are not directly applicable to such models. In this paper, we present and apply three different methods that can be used to study structural identifiability in mixed-effects models. The first method, called the repeated measurement approach, is based on applying a set of previously established statistical theorems. The second method, called the augmented system approach, is based on augmenting the mixed-effects model to an extended state-space form. The third method, called the Laplace transform mixed-effects extension, is based on considering the moment invariants of the systems transfer function as functions of random variables. To illustrate, compare and contrast the application of the three methods, they are applied to a set of mixed-effects models. Three structural identifiability analysis methods applicable to mixed-effects models have been presented in this paper. As method development of structural identifiability techniques for mixed-effects models has been given very little attention, despite mixed-effects models being widely used, the methods presented in this paper provides a way of handling structural identifiability in mixed-effects models previously not

Robust global identifiability theory using potentials--Application to compartmental models.

Science.gov (United States)

Wongvanich, N; Hann, C E; Sirisena, H R

2015-04-01

This paper presents a global practical identifiability theory for analyzing and identifying linear and nonlinear compartmental models. The compartmental system is prolonged onto the potential jet space to formulate a set of input-output equations that are integrals in terms of the measured data, which allows for robust identification of parameters without requiring any simulation of the model differential equations. Two classes of linear and non-linear compartmental models are considered. The theory is first applied to analyze the linear nitrous oxide (N2O) uptake model. The fitting accuracy of the identified models from differential jet space and potential jet space identifiability theories is compared with a realistic noise level of 3% which is derived from sensor noise data in the literature. The potential jet space approach gave a match that was well within the coefficient of variation. The differential jet space formulation was unstable and not suitable for parameter identification. The proposed theory is then applied to a nonlinear immunological model for mastitis in cows. In addition, the model formulation is extended to include an iterative method which allows initial conditions to be accurately identified. With up to 10% noise, the potential jet space theory predicts the normalized population concentration infected with pathogens, to within 9% of the true curve. Copyright © 2015 Elsevier Inc. All rights reserved.

Drosophila Cancer Models Identify Functional Differences between Ret Fusions.

Science.gov (United States)

Levinson, Sarah; Cagan, Ross L

2016-09-13

We generated and compared Drosophila models of RET fusions CCDC6-RET and NCOA4-RET. Both RET fusions directed cells to migrate, delaminate, and undergo EMT, and both resulted in lethality when broadly expressed. In all phenotypes examined, NCOA4-RET was more severe than CCDC6-RET, mirroring their effects on patients. A functional screen against the Drosophila kinome and a library of cancer drugs found that CCDC6-RET and NCOA4-RET acted through different signaling networks and displayed distinct drug sensitivities. Combining data from the kinome and drug screens identified the WEE1 inhibitor AZD1775 plus the multi-kinase inhibitor sorafenib as a synergistic drug combination that is specific for NCOA4-RET. Our work emphasizes the importance of identifying and tailoring a patient's treatment to their specific RET fusion isoform and identifies a multi-targeted therapy that may prove effective against tumors containing the NCOA4-RET fusion. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Identifying Method of Drunk Driving Based on Driving Behavior

Directory of Open Access Journals (Sweden)

Xiaohua Zhao

2011-05-01

Full Text Available Drunk driving is one of the leading causes contributing to traffic crashes. There are numerous issues that need to be resolved with the current method of identifying drunk driving. Driving behavior, with the characteristic of real-time, was extensively researched to identify impaired driving behaviors. In this paper, the drives with BACs above 0.05% were defined as drunk driving state. A detailed comparison was made between normal driving and drunk driving. The experiment in driving simulator was designed to collect the driving performance data of the groups. According to the characteristics analysis for the effect of alcohol on driving performance, seven significant indicators were extracted and the drunk driving was identified by the Fisher Discriminant Method. The discriminant function demonstrated a high accuracy of classification. The optimal critical score to differentiate normal from drinking state was found to be 0. The evaluation result verifies the accuracy of classification method.

40 CFR 255.10 - Criteria for identifying regions.

Science.gov (United States)

2010-07-01

... institutional gaps or inadequacies are found, regions should be identified keeping in mind which agencies would... section 208 of the Federal Water Pollution Control Act, with underground injection control agencies...

Utilising identifier error variation in linkage of large administrative data sources

Directory of Open Access Journals (Sweden)

Katie Harron

2017-02-01

Full Text Available Abstract Background Linkage of administrative data sources often relies on probabilistic methods using a set of common identifiers (e.g. sex, date of birth, postcode. Variation in data quality on an individual or organisational level (e.g. by hospital can result in clustering of identifier errors, violating the assumption of independence between identifiers required for traditional probabilistic match weight estimation. This potentially introduces selection bias to the resulting linked dataset. We aimed to measure variation in identifier error rates in a large English administrative data source (Hospital Episode Statistics; HES and to incorporate this information into match weight calculation. Methods We used 30,000 randomly selected HES hospital admissions records of patients aged 0–1, 5–6 and 18–19 years, for 2011/2012, linked via NHS number with data from the Personal Demographic Service (PDS; our gold-standard. We calculated identifier error rates for sex, date of birth and postcode and used multi-level logistic regression to investigate associations with individual-level attributes (age, ethnicity, and gender and organisational variation. We then derived: i weights incorporating dependence between identifiers; ii attribute-specific weights (varying by age, ethnicity and gender; and iii organisation-specific weights (by hospital. Results were compared with traditional match weights using a simulation study. Results Identifier errors (where values disagreed in linked HES-PDS records or missing values were found in 0.11% of records for sex and date of birth and in 53% of records for postcode. Identifier error rates differed significantly by age, ethnicity and sex (p < 0.0005. Errors were less frequent in males, in 5–6 year olds and 18–19 year olds compared with infants, and were lowest for the Asian ethic group. A simulation study demonstrated that substantial bias was introduced into estimated readmission rates in the presence

Identifying and Ranking the Determinants of Tourism Performance

DEFF Research Database (Denmark)

Assaf, A.George; Josiassen, Alexander

2012-01-01

, their tourism industries, and tourism businesses seek to improve the performance of the tourism industry and its constituents by vigorously promoting themselves to international tourists, cutting costs, and identifying synergies in their tourism endeavors. In seeking to improve the tourism industry......, the determinants that affect tourism performance are of key interest to the stakeholders. A key obstacle toward improving performance is the multitude of determinants that can affect tourism performance. The literature has yet to provide concrete insights into the determinants of tourism performance...... and their relative importance. The present study addresses this important gap. We identify and rank the determinants of tourism performance. We also provide performance measures of international tourism destinations. The results are derived using the Data Envelopment Analysis (DEA) and bootstrap truncated regression...

Genome wide association study identifies KCNMA1 contributing to human obesity

DEFF Research Database (Denmark)

Jiao, Hong; Arner, Peter; Hoffstedt, Johan

2011-01-01

Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population....... Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity....

Identifying novel drug indications through automated reasoning.

Directory of Open Access Journals (Sweden)

Luis Tari

Full Text Available With the large amount of pharmacological and biological knowledge available in literature, finding novel drug indications for existing drugs using in silico approaches has become increasingly feasible. Typical literature-based approaches generate new hypotheses in the form of protein-protein interactions networks by means of linking concepts based on their cooccurrences within abstracts. However, this kind of approaches tends to generate too many hypotheses, and identifying new drug indications from large networks can be a time-consuming process.In this work, we developed a method that acquires the necessary facts from literature and knowledge bases, and identifies new drug indications through automated reasoning. This is achieved by encoding the molecular effects caused by drug-target interactions and links to various diseases and drug mechanism as domain knowledge in AnsProlog, a declarative language that is useful for automated reasoning, including reasoning with incomplete information. Unlike other literature-based approaches, our approach is more fine-grained, especially in identifying indirect relationships for drug indications.To evaluate the capability of our approach in inferring novel drug indications, we applied our method to 943 drugs from DrugBank and asked if any of these drugs have potential anti-cancer activities based on information on their targets and molecular interaction types alone. A total of 507 drugs were found to have the potential to be used for cancer treatments. Among the potential anti-cancer drugs, 67 out of 81 drugs (a recall of 82.7% are indeed known cancer drugs. In addition, 144 out of 289 drugs (a recall of 49.8% are non-cancer drugs that are currently tested in clinical trials for cancer treatments. These results suggest that our method is able to infer drug indications (original or alternative based on their molecular targets and interactions alone and has the potential to discover novel drug indications for

Identifying suitable sites for Florida panther reintroduction

Science.gov (United States)

Thatcher, Cindy A.; van Manen, Frank T.; Clark, Joseph D.

2006-01-01

A major objective of the 1995 Florida Panther (Puma concolor cory) Recovery Plan is the establishment of 2 additional panther populations within the historic range. Our goal was to identify prospective sites for Florida panther reintroduction within the historic range based on quantitative landscape assessments. First, we delineated 86 panther home ranges using telemetry data collected from 1981 to 2001 in south Florida to develop a Mahalanobis distance (D2) habitat model, using 4 anthropogenic variables and 3 landscape variables mapped at a 500-m resolution. From that analysis, we identified 9 potential reintroduction sites of sufficient size to support a panther population. We then developed a similar D2 model at a higher spatial resolution to quantify the area of favorable panther habitat at each site. To address potential for the population to expand, we calculated the amount of favorable habitat adjacent to each prospective reintroduction site within a range of dispersal distances of female panthers. We then added those totals to the contiguous patches to estimate the total amount of effective panther habitat at each site. Finally, we developed an expert-assisted model to rank and incorporate potentially important habitat variables that were not appropriate for our empirical analysis (e.g., area of public lands, livestock density). Anthropogenic factors heavily influenced both the landscape and the expert-assisted models. Of the 9 areas we identified, the Okefenokee National Wildlife Refuge, Ozark National Forest, and Felsenthal National Wildlife Refuge regions had the highest combination of effective habitat area and expert opinion scores. Sensitivity analyses indicated that variability among key model parameters did not affect the high ranking of those sites. Those sites should be considered as starting points for the field evaluation of potential reintroduction sites.

Identifying semiconductors by d.c. ionization conductivity

International Nuclear Information System (INIS)

Derenzo, Stephen E.; Bourret-Courchesne, Edith; James, Floyd J.; Klintenberg, Mattias K.; Porter-Chapman, Yetta; Wang, Jie; Weber, Marvin J.

2006-01-01

We describe a method for identifying semiconductor radiation detector materials based on the mobility of internally generated electrons and holes. It was designed for the early stages of exploration, when samples are not available as single crystals, but as crystalline powders. Samples are confined under pressure in an electric field and the increase in current resulting from exposure to a high-intensity source of 60Co gamma rays (i.e. the ionization current) is measured. We find that for known semiconductors the d.c. ionization current depends on voltage according to the Hecht equation, and for known insulators the d.c. ionization current is below our detection limits. This shows that the method can identify semiconductors in spite of significant carrier trapping. Using this method, we have determined that BiOI, PbIF,BiPbO2Cl, BiPbO2Br, BiPbO2I, Bi2GdO4Cl, Pb3O2I2, and Pb5O4I2 are semiconductors

Structural identifiability of cyclic graphical models of biological networks with latent variables.

Science.gov (United States)

Wang, Yulin; Lu, Na; Miao, Hongyu

2016-06-13

Graphical models have long been used to describe biological networks for a variety of important tasks such as the determination of key biological parameters, and the structure of graphical model ultimately determines whether such unknown parameters can be unambiguously obtained from experimental observations (i.e., the identifiability problem). Limited by resources or technical capacities, complex biological networks are usually partially observed in experiment, which thus introduces latent variables into the corresponding graphical models. A number of previous studies have tackled the parameter identifiability problem for graphical models such as linear structural equation models (SEMs) with or without latent variables. However, the limited resolution and efficiency of existing approaches necessarily calls for further development of novel structural identifiability analysis algorithms. An efficient structural identifiability analysis algorithm is developed in this study for a broad range of network structures. The proposed method adopts the Wright's path coefficient method to generate identifiability equations in forms of symbolic polynomials, and then converts these symbolic equations to binary matrices (called identifiability matrix). Several matrix operations are introduced for identifiability matrix reduction with system equivalency maintained. Based on the reduced identifiability matrices, the structural identifiability of each parameter is determined. A number of benchmark models are used to verify the validity of the proposed approach. Finally, the network module for influenza A virus replication is employed as a real example to illustrate the application of the proposed approach in practice. The proposed approach can deal with cyclic networks with latent variables. The key advantage is that it intentionally avoids symbolic computation and is thus highly efficient. Also, this method is capable of determining the identifiability of each single parameter and

Using the National Provider Identifier for Health Care...

Data.gov (United States)

U.S. Department of Health & Human Services — The establishment in recent years of a National Provider Identifier (NPI) offers a new method for counting and categorizing physicians and other health care...

Identifying multiple submissions in Internet research: preserving data integrity.

Science.gov (United States)

Bowen, Anne M; Daniel, Candice M; Williams, Mark L; Baird, Grayson L

2008-11-01

Internet-based sexuality research with hidden populations has become increasingly popular. Respondent anonymity may encourage participation and lower social desirability, but associated disinhibition may promote multiple submissions, especially when incentives are offered. The goal of this study was to identify the usefulness of different variables for detecting multiple submissions from repeat responders and to explore incentive effects. The data included 1,900 submissions from a three-session Internet intervention with a pretest and three post-test questionnaires. Participants were men who have sex with men and incentives were offered to rural participants for completing each questionnaire. The final number of submissions included 1,273 "unique", 132 first submissions by "repeat responders" and 495 additional submissions by the "repeat responders" (N = 1,900). Four categories of repeat responders were identified: "infrequent" (2-5 submissions), "persistent" (6-10 submissions), "very persistent" (11-30 submissions), and "hackers" (more than 30 submissions). Internet Provider (IP) addresses, user names, and passwords were the most useful for identifying "infrequent" repeat responders. "Hackers" often varied their IP address and identifying information to prevent easy identification, but investigating the data for small variations in IP, using reverse telephone look up, and patterns across usernames and passwords were helpful. Incentives appeared to play a role in stimulating multiple submissions, especially from the more sophisticated "hackers". Finally, the web is ever evolving and it will be necessary to have good programmers and staff who evolve as fast as "hackers".

Identifying Relevant Studies in Software Engineering

DEFF Research Database (Denmark)

Zhang, He; Ali Babar, Muhammad; Tell, Paolo

2011-01-01

Context: Systematic literature review (SLR) has become an important research methodology in software engineering since the introduction of evidence-based software engineering (EBSE) in 2004. One critical step in applying this methodology is to design and execute appropriate and effective search....... Objective: The main objective of the research reported in this paper is to improve the search step of undertaking SLRs in software engineering (SE) by devising and evaluating systematic and practical approaches to identifying relevant studies in SE. Method: We have systematically selected and analytically...

On the Use of Machine Learning for Identifying Botnet Network Traffic

DEFF Research Database (Denmark)

Stevanovic, Matija; Pedersen, Jens Myrup

2016-01-01

contemporary approaches use machine learning techniques for identifying malicious traffic. This paper presents a survey of contemporary botnet detection methods that rely on machine learning for identifying botnet network traffic. The paper provides a comprehensive overview on the existing scientific work thus...... contributing to the better understanding of capabilities, limitations and opportunities of using machine learning for identifying botnet traffic. Furthermore, the paper outlines possibilities for the future development of machine learning-based botnet detection systems....

Gene-environment interaction involving recently identified colorectal cancer susceptibility loci

Science.gov (United States)

Kantor, Elizabeth D.; Hutter, Carolyn M.; Minnier, Jessica; Berndt, Sonja I.; Brenner, Hermann; Caan, Bette J.; Campbell, Peter T.; Carlson, Christopher S.; Casey, Graham; Chan, Andrew T.; Chang-Claude, Jenny; Chanock, Stephen J.; Cotterchio, Michelle; Du, Mengmeng; Duggan, David; Fuchs, Charles S.; Giovannucci, Edward L.; Gong, Jian; Harrison, Tabitha A.; Hayes, Richard B.; Henderson, Brian E.; Hoffmeister, Michael; Hopper, John L.; Jenkins, Mark A.; Jiao, Shuo; Kolonel, Laurence N.; Le Marchand, Loic; Lemire, Mathieu; Ma, Jing; Newcomb, Polly A.; Ochs-Balcom, Heather M.; Pflugeisen, Bethann M.; Potter, John D.; Rudolph, Anja; Schoen, Robert E.; Seminara, Daniela; Slattery, Martha L.; Stelling, Deanna L.; Thomas, Fridtjof; Thornquist, Mark; Ulrich, Cornelia M.; Warnick, Greg S.; Zanke, Brent W.; Peters, Ulrike; Hsu, Li; White, Emily

2014-01-01

BACKGROUND Genome-wide association studies have identified several single nucleotide polymorphisms (SNPs) that are associated with risk of colorectal cancer (CRC). Prior research has evaluated the presence of gene-environment interaction involving the first 10 identified susceptibility loci, but little work has been conducted on interaction involving SNPs at recently identified susceptibility loci, including: rs10911251, rs6691170, rs6687758, rs11903757, rs10936599, rs647161, rs1321311, rs719725, rs1665650, rs3824999, rs7136702, rs11169552, rs59336, rs3217810, rs4925386, and rs2423279. METHODS Data on 9160 cases and 9280 controls from the Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO) and Colon Cancer Family Registry (CCFR) were used to evaluate the presence of interaction involving the above-listed SNPs and sex, body mass index (BMI), alcohol consumption, smoking, aspirin use, post-menopausal hormone (PMH) use, as well as intake of dietary calcium, dietary fiber, dietary folate, red meat, processed meat, fruit, and vegetables. Interaction was evaluated using a fixed-effects meta-analysis of an efficient Empirical Bayes estimator, and permutation was used to account for multiple comparisons. RESULTS None of the permutation-adjusted p-values reached statistical significance. CONCLUSIONS The associations between recently identified genetic susceptibility loci and CRC are not strongly modified by sex, BMI, alcohol, smoking, aspirin, PMH use, and various dietary factors. IMPACT Results suggest no evidence of strong gene-environment interactions involving the recently identified 16 susceptibility loci for CRC taken one at a time. PMID:24994789

A Systematic Approach to Determining the Identifiability of Multistage Carcinogenesis Models.

Science.gov (United States)

Brouwer, Andrew F; Meza, Rafael; Eisenberg, Marisa C

2017-07-01

Multistage clonal expansion (MSCE) models of carcinogenesis are continuous-time Markov process models often used to relate cancer incidence to biological mechanism. Identifiability analysis determines what model parameter combinations can, theoretically, be estimated from given data. We use a systematic approach, based on differential algebra methods traditionally used for deterministic ordinary differential equation (ODE) models, to determine identifiable combinations for a generalized subclass of MSCE models with any number of preinitation stages and one clonal expansion. Additionally, we determine the identifiable combinations of the generalized MSCE model with up to four clonal expansion stages, and conjecture the results for any number of clonal expansion stages. The results improve upon previous work in a number of ways and provide a framework to find the identifiable combinations for further variations on the MSCE models. Finally, our approach, which takes advantage of the Kolmogorov backward equations for the probability generating functions of the Markov process, demonstrates that identifiability methods used in engineering and mathematics for systems of ODEs can be applied to continuous-time Markov processes. © 2016 Society for Risk Analysis.

Identifying customer-focused performance measures : final report 655.

Science.gov (United States)

2010-10-01

The Arizona Department of Transportation (ADOT) completed a comprehensive customer satisfaction : assessment in July 2009. ADOT commissioned the assessment to acquire statistically valid data from residents : and community leaders to help it identify...

Identifying salt stress-responsive transcripts from Roselle ( Hibiscus ...

African Journals Online (AJOL)

Hibiscus sabdariffa L.). Identifying the potentially novel transcripts responsible for salt stress tolerance in roselle will increase knowledge of the molecular mechanism underlying salt stress responses. In this study, differential display reverse ...

Performance testing to identify climate-ready trees

Science.gov (United States)

E.Gregory McPherson; Alison M. Berry; Natalie S. van Doorn

2018-01-01

Urban forests produce ecosystem services that can benefit city dwellers, but are especially vulnerable to climate change stressors such as heat, drought, extreme winds and pests. Tree selection is an important decision point for managers wanting to transition to a more stable and resilient urban forest structure. This study describes a five-step process to identify and...

Identify, Organize, and Retrieve Items Using Zotero

Science.gov (United States)

Clark, Brian; Stierman, John

2009-01-01

Librarians build collections. To do this they use tools that help them identify, organize, and retrieve items for the collection. Zotero (zoh-TAIR-oh) is such a tool that helps the user build a library of useful books, articles, web sites, blogs, etc., discovered while surfing online. A visit to Zotero's homepage, www.zotero.org, shows a number of…

Novel TIA biomarkers identified by mass spectrometry-based proteomics.

Science.gov (United States)

George, Paul M; Mlynash, Michael; Adams, Christopher M; Kuo, Calvin J; Albers, Gregory W; Olivot, Jean-Marc

2015-12-01

Transient ischemic attacks remain a clinical diagnosis with significant variability between physicians. Finding reliable biomarkers to identify transient ischemic attacks would improve patient care and optimize treatment. Our aim is to identify novel serum TIA biomarkers through the use of mass spectroscopy-based proteomics. Patients with transient neurologic symptoms were prospectively enrolled. Mass spectrometry-based proteomics, an unbiased method to identify candidate proteins, was used to test the serum of the patients for biomarkers of cerebral ischemia. Three candidate proteins were found, and serum concentrations of these proteins were measured by enzyme-linked immunosorbent assay in a second cohort of prospectively enrolled patients. The Student's t-test was used for comparison. The Benjamini-Hochberg false discovery rate controlling procedure for multiple comparison adjustments determined significance for the proteomic screen. Patients with transient ischemic attacks (n = 20), minor strokes (n = 15), and controls (i.e. migraine, seizure, n = 12) were enrolled in the first cohort. Ceruloplasmin, complement component C8 gamma (C8γ), and platelet basic protein were significantly different between the ischemic group (transient ischemic attack and minor stroke) and the controls (P = 0·0001, P = 0·00027, P = 0·00105, respectively). A second cohort of patients with transient ischemic attack (n = 22), minor stroke (n = 20), and controls' (n = 12) serum was enrolled. Platelet basic protein serum concentrations were increased in the ischemic samples compared with control (for transient ischemic attack alone, P = 0·019, for the ischemic group, P = 0·046). Ceruloplasmin trended towards increased concentrations in the ischemic group (P = 0·127); no significant difference in C8γ (P = 0·44) was found. Utilizing mass spectrometry-based proteomics, platelet basic protein has been identified as a candidate serum

Identifying Key Attributes for Protein Beverages.

Science.gov (United States)

Oltman, A E; Lopetcharat, K; Bastian, E; Drake, M A

2015-06-01

This study identified key attributes of protein beverages and evaluated effects of priming on liking of protein beverages. An adaptive choice-based conjoint study was conducted along with Kano analysis to gain insight on protein beverage consumers (n = 432). Attributes evaluated included label claim, protein type, amount of protein, carbohydrates, sweeteners, and metabolic benefits. Utility scores for levels and importance scores for attributes were determined. Subsequently, two pairs of clear acidic whey protein beverages were manufactured that differed by age of protein source or the amount of whey protein per serving. Beverages were evaluated by 151 consumers on two occasions with or without priming statements. One priming statement declared "great flavor," the other priming statement declared 20 g protein per serving. A two way analysis of variance was applied to discern the role of each priming statement. The most important attribute for protein beverages was sweetener type, followed by amount of protein, followed by type of protein followed by label claim. Beverages with whey protein, naturally sweetened, reduced sugar and ≥15 g protein per serving were most desired. Three consumer clusters were identified, differentiated by their preferences for protein type, sweetener and amount of protein. Priming statements positively impacted concept liking (P 0.05). Consistent with trained panel profiles of increased cardboard flavor with higher protein content, consumers liked beverages with 10 g protein more than beverages with 20 g protein (6.8 compared with 5.7, P appeal. © 2015 Institute of Food Technologists®

Combinatorial Drug Screening Identifies Ewing Sarcoma-specific Sensitivities

DEFF Research Database (Denmark)

Radic-Sarikas, Branka; Tsafou, Kalliopi P; Emdal, Kristina B.

2017-01-01

Improvements in survival for Ewing sarcoma pediatric and adolescent patients have been modest over the past 20 years. Combinations of anticancer agents endure as an option to overcome resistance to single treatments caused by compensatory pathways. Moreover, combinations are thought to lessen any...... associated adverse side effects through reduced dosing, which is particularly important in childhood tumors. Using a parallel phenotypic combinatorial screening approach of cells derived from three pediatric tumor types, we identified Ewing sarcoma-specific interactions of a diverse set of targeted agents...... including approved drugs. We were able to retrieve highly synergistic drug combinations specific for Ewing sarcoma and identified signaling processes important for Ewing sarcoma cell proliferation determined by EWS-FLI1 We generated a molecular target profile of PKC412, a multikinase inhibitor with strong...

32 CFR Appendix A to Part 275 - Obtaining Basic Identifying Account Information

Science.gov (United States)

2010-07-01

... 32 National Defense 2 2010-07-01 2010-07-01 false Obtaining Basic Identifying Account Information... Information A. A DoD law enforcement office may issue a formal written request for basic identifying account... only the above specified basic identifying information concerning a customer's account. C. A format for...

Identifying QCD Transition Using Deep Learning

Science.gov (United States)

Zhou, Kai; Pang, Long-gang; Su, Nan; Petersen, Hannah; Stoecker, Horst; Wang, Xin-Nian

2018-02-01

In this proceeding we review our recent work using supervised learning with a deep convolutional neural network (CNN) to identify the QCD equation of state (EoS) employed in hydrodynamic modeling of heavy-ion collisions given only final-state particle spectra ρ(pT, V). We showed that there is a traceable encoder of the dynamical information from phase structure (EoS) that survives the evolution and exists in the final snapshot, which enables the trained CNN to act as an effective "EoS-meter" in detecting the nature of the QCD transition.

Dieta e dispersão de sementes por Cerdocyon thous (Linnaeus (Carnívora, Canidae, em um fragmento florestal no Paraná, Brasil Diet and seed dispersal by Cerdocyon thous (Linnaeus in a forest fragment in Paraná (Carnivora, Canidae

Directory of Open Access Journals (Sweden)

Vlamir J. Rocha

2004-12-01

Full Text Available Embora o cachorro-do-mato, Cerdocyon thous (Linnaeus, 1706, seja um Canidae relativamente comum, não há muita informação sobre sua dieta e seu papel como dispersor de sementes nos diferentes habitats onde ocorre. O objetivo deste trabalho foi o de reportar a dieta de C. thous e sua importância como dispersor e/ou predador de sementes, e ainda testar a taxa de germinação de sementes após passar pelo trato digestório do animal. O estudo foi realizado em um fragmento (680 ha de Floresta Estacional Semidecidual, o Parque Estadual Mata dos Godoy, localizado na cidade de Londrina, Paraná, sul do Brasil. A metodologia consistiu de coletas de fezes de C. thous, as quais foram analisadas em laboratório para identificar os itens consumidos. Nos testes de germinação, as sementes foram dispostas para germinar em placas de Petri com algodão umedecido em água. Noventa e três amostras fecais com 219 itens de origem vegetal e animal foram registradas, sendo 36,52% contendo restos de pequenos roedores, 24,19% de gramíneas, 13,24% de aves, 10,47% de insetos, 6,39% de Syagrus romanzoffiana (Cham. Glassm., 4,6% de outros itens de origem animal e 4,54% de outros itens de origem vegetal. Ainda, C. thous dispersou nove espécies de plantas, com relevante importância para a germinação de algumas sementes que passaram pelo trato digestório do animal, exceto para S. romanzoffiana, cujas sementes não germinaram nas condições de laboratório. Conclui-se que, C. thous apresentou uma dieta generalista e oportunista, sobrevivendo em áreas degradadas e antrópicas, e agindo como dispersor de sementes nestes locais.Although the crab eating fox, Cerdocyon thous (Linnaeus, 1706, is a relatively common Canidae, there isn't much information about its diet and its role as a seed disperser in the different habitats where it occurs. The aim of this work was to report the diet of the C. thous and its importance as a seed disperser and / or a seed predator and

An Automated Summarization Assessment Algorithm for Identifying Summarizing Strategies.

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Asad Abdi

Full Text Available Summarization is a process to select important information from a source text. Summarizing strategies are the core cognitive processes in summarization activity. Since summarization can be important as a tool to improve comprehension, it has attracted interest of teachers for teaching summary writing through direct instruction. To do this, they need to review and assess the students' summaries and these tasks are very time-consuming. Thus, a computer-assisted assessment can be used to help teachers to conduct this task more effectively.This paper aims to propose an algorithm based on the combination of semantic relations between words and their syntactic composition to identify summarizing strategies employed by students in summary writing. An innovative aspect of our algorithm lies in its ability to identify summarizing strategies at the syntactic and semantic levels. The efficiency of the algorithm is measured in terms of Precision, Recall and F-measure. We then implemented the algorithm for the automated summarization assessment system that can be used to identify the summarizing strategies used by students in summary writing.

High-throughput respirometric assay identifies predictive toxicophore of mitochondrial injury

Energy Technology Data Exchange (ETDEWEB)

Wills, Lauren P. [MitoHealth Inc., Charleston, SC 29403 (United States); Beeson, Gyda C.; Trager, Richard E.; Lindsey, Christopher C. [Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, SC 29425 (United States); Beeson, Craig C. [MitoHealth Inc., Charleston, SC 29403 (United States); Peterson, Yuri K. [Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, SC 29425 (United States); Schnellmann, Rick G., E-mail: schnell@musc.edu [Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, SC 29425 (United States); Ralph H. Johnson VA Medical Center, Charleston, SC 29401 (United States)

2013-10-15

Many environmental chemicals and drugs negatively affect human health through deleterious effects on mitochondrial function. Currently there is no chemical library of mitochondrial toxicants, and no reliable methods for predicting mitochondrial toxicity. We hypothesized that discrete toxicophores defined by distinct chemical entities can identify previously unidentified mitochondrial toxicants. We used a respirometric assay to screen 1760 compounds (5 μM) from the LOPAC and ChemBridge DIVERSet libraries. Thirty-one of the assayed compounds decreased uncoupled respiration, a stress test for mitochondrial dysfunction, prior to a decrease in cell viability and reduced the oxygen consumption rate in isolated mitochondria. The mitochondrial toxicants were grouped by chemical similarity and two clusters containing four compounds each were identified. Cheminformatic analysis of one of the clusters identified previously uncharacterized mitochondrial toxicants from the ChemBridge DIVERSet. This approach will enable the identification of mitochondrial toxicants and advance the prediction of mitochondrial toxicity for both drug discovery and risk assessment. - Highlights: • Respirometric assay conducted in RPTC to create mitochondrial toxicant database. • Chemically similar mitochondrial toxicants aligned as mitochondrial toxicophores • Mitochondrial toxicophore identifies five novel mitochondrial toxicants.

High-throughput respirometric assay identifies predictive toxicophore of mitochondrial injury

International Nuclear Information System (INIS)

Wills, Lauren P.; Beeson, Gyda C.; Trager, Richard E.; Lindsey, Christopher C.; Beeson, Craig C.; Peterson, Yuri K.; Schnellmann, Rick G.

2013-01-01

Many environmental chemicals and drugs negatively affect human health through deleterious effects on mitochondrial function. Currently there is no chemical library of mitochondrial toxicants, and no reliable methods for predicting mitochondrial toxicity. We hypothesized that discrete toxicophores defined by distinct chemical entities can identify previously unidentified mitochondrial toxicants. We used a respirometric assay to screen 1760 compounds (5 μM) from the LOPAC and ChemBridge DIVERSet libraries. Thirty-one of the assayed compounds decreased uncoupled respiration, a stress test for mitochondrial dysfunction, prior to a decrease in cell viability and reduced the oxygen consumption rate in isolated mitochondria. The mitochondrial toxicants were grouped by chemical similarity and two clusters containing four compounds each were identified. Cheminformatic analysis of one of the clusters identified previously uncharacterized mitochondrial toxicants from the ChemBridge DIVERSet. This approach will enable the identification of mitochondrial toxicants and advance the prediction of mitochondrial toxicity for both drug discovery and risk assessment. - Highlights: • Respirometric assay conducted in RPTC to create mitochondrial toxicant database. • Chemically similar mitochondrial toxicants aligned as mitochondrial toxicophores • Mitochondrial toxicophore identifies five novel mitochondrial toxicants

Identifying pathogenicity of human variants via paralog-based yeast complementation.

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Fan Yang

2017-05-01

Full Text Available To better understand the health implications of personal genomes, we now face a largely unmet challenge to identify functional variants within disease-associated genes. Functional variants can be identified by trans-species complementation, e.g., by failure to rescue a yeast strain bearing a mutation in an orthologous human gene. Although orthologous complementation assays are powerful predictors of pathogenic variation, they are available for only a few percent of human disease genes. Here we systematically examine the question of whether complementation assays based on paralogy relationships can expand the number of human disease genes with functional variant detection assays. We tested over 1,000 paralogous human-yeast gene pairs for complementation, yielding 34 complementation relationships, of which 33 (97% were novel. We found that paralog-based assays identified disease variants with success on par with that of orthology-based assays. Combining all homology-based assay results, we found that complementation can often identify pathogenic variants outside the homologous sequence region, presumably because of global effects on protein folding or stability. Within our search space, paralogy-based complementation more than doubled the number of human disease genes with a yeast-based complementation assay for disease variation.

Having your radioactive objects identified and collected

International Nuclear Information System (INIS)

2012-12-01

This brochure explains the risks linked with some ancient radioactive objects of domestic use (like radium products of medical use), how to identify them and to have them collected by the French national agency of radioactive wastes (Andra) for further processing. Some advice are given regarding the identification of the objects, their relative hazardousness and the precautions to take for their handling

An Alternative Method for Identifying Interplanetary Magnetic Cloud Regions

Energy Technology Data Exchange (ETDEWEB)

Ojeda-Gonzalez, A.; Prestes, A.; Klausner, V. [Laboratory of Physics and Astronomy, IP and D/Universidade do Vale do Paraíba—UNIVAP, São José dos Campos, SP (Brazil); Mendes, O. [Division of Space Geophysics, National Institute for Space Research, São José dos Campos, SP (Brazil); Calzadilla, A. [Department of Space Geophysics, Institute of Geophysics and Astronomy, Havana (Cuba); Domingues, M. O., E-mail: ojeda.gonzalez.a@gmail.com [Associate Laboratory of Applied Computing and Mathematics, National Institute for Space Research, São José dos Campos, SP (Brazil)

2017-03-10

Spatio-temporal entropy (STE) analysis is used as an alternative mathematical tool to identify possible magnetic cloud (MC) candidates. We analyze Interplanetary Magnetic Field (IMF) data using a time interval of only 10 days. We select a convenient data interval of 2500 records moving forward by 200 record steps until the end of the time series. For every data segment, the STE is calculated at each step. During an MC event, the STE reaches values close to zero. This extremely low value of STE is due to MC structure features. However, not all of the magnetic components in MCs have STE values close to zero at the same time. For this reason, we create a standardization index (the so-called Interplanetary Entropy, IE, index). This index is a worthwhile effort to develop new tools to help diagnose ICME structures. The IE was calculated using a time window of one year (1999), and it has a success rate of 70% over other identifiers of MCs. The unsuccessful cases (30%) are caused by small and weak MCs. The results show that the IE methodology identified 9 of 13 MCs, and emitted nine false alarm cases. In 1999, a total of 788 windows of 2500 values existed, meaning that the percentage of false alarms was 1.14%, which can be considered a good result. In addition, four time windows, each of 10 days, are studied, where the IE method was effective in finding MC candidates. As a novel result, two new MCs are identified in these time windows.

Emerging Fabric of Science: Persistent Identifiers and Knowledge Networks

Science.gov (United States)

Hugo, W.

2017-12-01

There is an increasing emphasis on the use of persistent identifiers in the description of scientific activity, whether this is done to cite scholarly publications and research output, reliably identify role players such as funders and researchers, or to provide long-lasting references to controlled vocabulary. The ICSU World Data System has been promoting the establishment of a "Knowledge Network" to describe research activity, realising that parts of the network will be established as a federated `system', based on linkages between registries of persistent identifiers. In addition, there is a growing focus on not only the relationship between these major role players and associated digital objects, but also on the processes of science: provenance, reproducibility, and re-usability being significant topics of discussion. The paper will focus on description of the `Fabric of Science' from the perspectives of both structure and processes, review the state of implementation of real services and infrastructure in support of it. A case is made for inclusion of persistent identifiers into the mainstream activities of scientists and data infrastructure managers, and for the development of services, such as Scholix, to make better use of the relationships between digital objects and major role players. A proposal is made for the adoption of a federated system of services that are based on a hybrid graph-object framework similar to Scholix for recording the activity of scientific research. Finally, links to related ideas are explored: novel ways of representing of knowledge (such as Nanopublications) and the possibility that the publication paradigm currently in use may have to be amended.

Antifungal chemical compounds identified using a C. elegans pathogenicity assay.

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Julia Breger

2007-02-01

Full Text Available There is an urgent need for the development of new antifungal agents. A facile in vivo model that evaluates libraries of chemical compounds could solve some of the main obstacles in current antifungal discovery. We show that Candida albicans, as well as other Candida species, are ingested by Caenorhabditis elegans and establish a persistent lethal infection in the C. elegans intestinal track. Importantly, key components of Candida pathogenesis in mammals, such as filament formation, are also involved in nematode killing. We devised a Candida-mediated C. elegans assay that allows high-throughput in vivo screening of chemical libraries for antifungal activities, while synchronously screening against toxic compounds. The assay is performed in liquid media using standard 96-well plate technology and allows the study of C. albicans in non-planktonic form. A screen of 1,266 compounds with known pharmaceutical activities identified 15 (approximately 1.2% that prolonged survival of C. albicans-infected nematodes and inhibited in vivo filamentation of C. albicans. Two compounds identified in the screen, caffeic acid phenethyl ester, a major active component of honeybee propolis, and the fluoroquinolone agent enoxacin exhibited antifungal activity in a murine model of candidiasis. The whole-animal C. elegans assay may help to study the molecular basis of C. albicans pathogenesis and identify antifungal compounds that most likely would not be identified by in vitro screens that target fungal growth. Compounds identified in the screen that affect the virulence of Candida in vivo can potentially be used as "probe compounds" and may have antifungal activity against other fungi.

Caracterização molecular de butiazeiro por marcadores RAPD Molecular characterization of Pindo palm by RAPD markers

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Adrise Medeiros Nunes

2008-09-01

Full Text Available O grupo botânico Arecaceae é de extremo interesse por compreender plantas em extinção e por apresentar um grande potencial de exploração econômica. O butiazeiro (Butia capitata (Mart. Becc. ocorre naturalmente no Sul do Brasil. Sua caracterização molecular é de extremo interesse para futuros trabalhos de melhoramento genético. Assim sendo, verificou-se a variabilidade genética existente entre vinte e dois genótipos de butiazeiro da espécie (Butia capitata, pertencentes ao BAG (Banco Ativo de Germoplasma de frutíferas nativas do Centro Agropecuário da Palma - UFPel. Esses genótipos foram analisados usando marcadores do tipo RAPD (Random Amplified Polymorphic DNA. Um total de 136 fragmentos foram obtidos, sendo 77 polimórficos. O primer OPA11 apresentou maior polimorfismo, produzindo 9 perfis diferentes. A análise de agrupamento, realizada pelo método UPGMA, produziu um dendrograma que permitiu a clara separação dos genótipos em dois grupos principais. Verificou-se que, com a técnica de marcadores de RAPD, foi possível obter um perfil molecular único e uma estimativa da variabilidade existente entre os genótipos de butiazeiro avaliados.The study of the botanical group Arecaceae is of extreme interest for evolving several endangered species of plants and for presenting a great potential of economical exploration. The Pindo palm (or wine palm, jelly palm (Butia capitata (Mart. Becc. is natural from the south of Brazil. Its molecular characterization is of extreme interest for future researches of genetic improvement. Since little is known about the variability of the species, the existent genetic variability was verified among twenty-two genotypes of Pindo palm (or wine palm, jelly palm, from BAG (Germoplasm Assets Bank of fruit trees native from the Agricultural Center of the Palma - UFPEL, which were analyzed using markers RAPD (Random Amplified Polymorphic DNA with Operon Technologies' decamers primers. With 21 primers

Bioprospecting insecticidal compounds from plants native to Mato Grosso do Sul, Brazil Bioprospecção de substâncias inseticidas de plantas nativas de Mato Grosso do Sul, Brasil

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Antonio P. Souza

2008-12-01

Full Text Available This paper reports on an evaluation of the insecticidal activity of extracts prepared from leaves of Tapirira guianensis Aubl. (Anacardiaceae, Attalea phalerata (Mart. ex Spreng. Burret (Arecaceae, Eugenia uniflora L. (Myrtaceae, and Gomphrena elegans Mart. (Amaranthaceae and from stems of Myracrodruon urundeuva Allemão (Anacardiaceae. Four extracts and 18 fractions with a range of polarities were tested. Ten-gram batches of wheat grains were each nebulized with 1 mL of a separate extract at 10% w/v. After solvent evaporation at 38 ºC, the grains were placed into flasks along with 20 unsexed 10- to 20-day old adult individuals of Sitophilus zeamais. The assessment was carried out on the fifth and tenth day by counting and discarding the dead insects. Leaf extracts of G. elegans showed an insecticidal effect ranging from 27% to 60% by the fifth day, whereas the effect of the remaining extracts tested (if active at all did not exceed 20% in the same period. By the tenth day, the most active extracts were those of A. phalerata (hexanic, 36.5% and all those of G. elegans (5280.5%, whereas the effect of the other extracts did not exceed 30%.No presente trabalho foi avaliada a atividade inseticida de extratos de limbos foliares de Tapirira guianensis Aubl. (Anacardiaceae, Attalea phalerata (Mart. ex Spreng. Burret (Arecaceae, Eugenia uniflora L. (Myrtaceae e Gomphrena elegans Mart. (Amaranthaceae e de caules de Myracrodruon urundeuva Allemão (Anacardiaceae. Foram testados quatro extratos e 18 frações, com diferentes polaridades. Dez gramas de grãos de trigo foram pulverizados com 1 mL de cada extrato a 10% (p/v. Após a evaporação do solvente a 38 ºC, os grãos foram acondicionados em recipientes juntamente com 20 indivíduos adultos de Sitophilus zeamais não sexados, com 10 a 20 dias de idade. As avaliações foram feitas no quinto e no décimo dia, contando-se o número de insetos mortos e descartando-os. Os extratos foliares de G. elegans

Polen y esporas de la Formación Navidad, Neógeno de Chile Pollen and spores of the Navidad Formation, Neogene from Chile

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VIVIANA BARREDA

2011-09-01

Full Text Available El análisis palinológico de la Formación Navidad en afloramientos de la Cordillera de la Costa, Chile central, brindó asociaciones dominadas por leños, cutículas, algas de agua dulce, esporas y granos de polen (elementos de origen continental con muy escasa participación de quistes de dinoflagelados, acritarcos y cubiertas internas de foraminíferos arenáceos (componentes marinos indicando que estas asociaciones se habrían acumulado en un ambiente marino. Las asociaciones de polen y esporas indican el desarrollo de una vegetación de bosque con participación de elementos gondwánicos (Podocarpaceae, Araucariaceae, Nothofagaceae y neotropicales (Sapotaceae, Malphigiaceae, Arecaceae, Chloranthaceae, Tiliaceae/Bombacaceae -Paleoflora Mixta- apoyando hipótesis previas basadas en las megafloras. En las márgenes de los bosques se habrían desarrollado parches con vegetación esclerófila con AAnacardiaceae y Fabaceae como componentes principales. Sobre suelos arenosos o marismas salinos se habrían desarrollado elementos herbaceo-arbustivos, xerofíticos y halofíticos, como Chenopodiaceae y Calyceraceae. Se destaca el primer registro de taxones endémicos de las familias Calyceraceae y Asteraceae (Barnadesioideae para la palinoflora de Chile. Estas comunidades vegetales se habrían desarrollado bajo condiciones de clima subtropical, cálido y húmedo. Desde el punto de vista cronoestratigráfico las asociaciones esporopolínicas sustentan una edad neógena para la Formación Navidad.Palynological assemblages recovered from the Navidad Formation in outcrops of the Cordillera de la Costa, central Chile, are dominated by wood remains, cuticles, spores and pollen grains and fresh water algae (continental elements with scarce dinoflagellate cysts, acritarchs, foraminiferal linnings marine palynomorphs indicating that these assemblages would have been accumulated in a marine environment. Spore-pollen assemblages indicate a forest vegetation

Validation of search filters for identifying pediatric studies in PubMed.

Science.gov (United States)

Leclercq, Edith; Leeflang, Mariska M G; van Dalen, Elvira C; Kremer, Leontien C M

2013-03-01

To identify and validate PubMed search filters for retrieving studies including children and to develop a new pediatric search filter for PubMed. We developed 2 different datasets of studies to evaluate the performance of the identified pediatric search filters, expressed in terms of sensitivity, precision, specificity, accuracy, and number needed to read (NNR). An optimal search filter will have a high sensitivity and high precision with a low NNR. In addition to the PubMed Limits: All Child: 0-18 years filter (in May 2012 renamed to PubMed Filter Child: 0-18 years), 6 search filters for identifying studies including children were identified: 3 developed by Kastner et al, 1 developed by BestBets, one by the Child Health Field, and 1 by the Cochrane Childhood Cancer Group. Three search filters (Cochrane Childhood Cancer Group, Child Health Field, and BestBets) had the highest sensitivity (99.3%, 99.5%, and 99.3%, respectively) but a lower precision (64.5%, 68.4%, and 66.6% respectively) compared with the other search filters. Two Kastner search filters had a high precision (93.0% and 93.7%, respectively) but a low sensitivity (58.5% and 44.8%, respectively). They failed to identify many pediatric studies in our datasets. The search terms responsible for false-positive results in the reference dataset were determined. With these data, we developed a new search filter for identifying studies with children in PubMed with an optimal sensitivity (99.5%) and precision (69.0%). Search filters to identify studies including children either have a low sensitivity or a low precision with a high NNR. A new pediatric search filter with a high sensitivity and a low NNR has been developed. Copyright © 2013 Mosby, Inc. All rights reserved.

PlateRunner: A Search Engine to Identify EMR Boilerplates.

Science.gov (United States)

Divita, Guy; Workman, T Elizabeth; Carter, Marjorie E; Redd, Andrew; Samore, Matthew H; Gundlapalli, Adi V

2016-01-01

Medical text contains boilerplated content, an artifact of pull-down forms from EMRs. Boilerplated content is the source of challenges for concept extraction on clinical text. This paper introduces PlateRunner, a search engine on boilerplates from the US Department of Veterans Affairs (VA) EMR. Boilerplates containing concepts should be identified and reviewed to recognize challenging formats, identify high yield document titles, and fine tune section zoning. This search engine has the capability to filter negated and asserted concepts, save and search query results. This tool can save queries, search results, and documents found for later analysis.

A simple method for identifying parameter correlations in partially observed linear dynamic models.

Science.gov (United States)

Li, Pu; Vu, Quoc Dong

2015-12-14

Parameter estimation represents one of the most significant challenges in systems biology. This is because biological models commonly contain a large number of parameters among which there may be functional interrelationships, thus leading to the problem of non-identifiability. Although identifiability analysis has been extensively studied by analytical as well as numerical approaches, systematic methods for remedying practically non-identifiable models have rarely been investigated. We propose a simple method for identifying pairwise correlations and higher order interrelationships of parameters in partially observed linear dynamic models. This is made by derivation of the output sensitivity matrix and analysis of the linear dependencies of its columns. Consequently, analytical relations between the identifiability of the model parameters and the initial conditions as well as the input functions can be achieved. In the case of structural non-identifiability, identifiable combinations can be obtained by solving the resulting homogenous linear equations. In the case of practical non-identifiability, experiment conditions (i.e. initial condition and constant control signals) can be provided which are necessary for remedying the non-identifiability and unique parameter estimation. It is noted that the approach does not consider noisy data. In this way, the practical non-identifiability issue, which is popular for linear biological models, can be remedied. Several linear compartment models including an insulin receptor dynamics model are taken to illustrate the application of the proposed approach. Both structural and practical identifiability of partially observed linear dynamic models can be clarified by the proposed method. The result of this method provides important information for experimental design to remedy the practical non-identifiability if applicable. The derivation of the method is straightforward and thus the algorithm can be easily implemented into a

Identifying Emotions on the Basis of Neural Activation.

Science.gov (United States)

Kassam, Karim S; Markey, Amanda R; Cherkassky, Vladimir L; Loewenstein, George; Just, Marcel Adam

2013-01-01

We attempt to determine the discriminability and organization of neural activation corresponding to the experience of specific emotions. Method actors were asked to self-induce nine emotional states (anger, disgust, envy, fear, happiness, lust, pride, sadness, and shame) while in an fMRI scanner. Using a Gaussian Naïve Bayes pooled variance classifier, we demonstrate the ability to identify specific emotions experienced by an individual at well over chance accuracy on the basis of: 1) neural activation of the same individual in other trials, 2) neural activation of other individuals who experienced similar trials, and 3) neural activation of the same individual to a qualitatively different type of emotion induction. Factor analysis identified valence, arousal, sociality, and lust as dimensions underlying the activation patterns. These results suggest a structure for neural representations of emotion and inform theories of emotional processing.

Identifying MMORPG Bots: A Traffic Analysis Approach

Science.gov (United States)

Chen, Kuan-Ta; Jiang, Jhih-Wei; Huang, Polly; Chu, Hao-Hua; Lei, Chin-Laung; Chen, Wen-Chin

2008-12-01

Massively multiplayer online role playing games (MMORPGs) have become extremely popular among network gamers. Despite their success, one of MMORPG's greatest challenges is the increasing use of game bots, that is, autoplaying game clients. The use of game bots is considered unsportsmanlike and is therefore forbidden. To keep games in order, game police, played by actual human players, often patrol game zones and question suspicious players. This practice, however, is labor-intensive and ineffective. To address this problem, we analyze the traffic generated by human players versus game bots and propose general solutions to identify game bots. Taking Ragnarok Online as our subject, we study the traffic generated by human players and game bots. We find that their traffic is distinguishable by 1) the regularity in the release time of client commands, 2) the trend and magnitude of traffic burstiness in multiple time scales, and 3) the sensitivity to different network conditions. Based on these findings, we propose four strategies and two ensemble schemes to identify bots. Finally, we discuss the robustness of the proposed methods against countermeasures of bot developers, and consider a number of possible ways to manage the increasingly serious bot problem.

Identifying MMORPG Bots: A Traffic Analysis Approach

Directory of Open Access Journals (Sweden)

Wen-Chin Chen

2008-11-01

Full Text Available Massively multiplayer online role playing games (MMORPGs have become extremely popular among network gamers. Despite their success, one of MMORPG's greatest challenges is the increasing use of game bots, that is, autoplaying game clients. The use of game bots is considered unsportsmanlike and is therefore forbidden. To keep games in order, game police, played by actual human players, often patrol game zones and question suspicious players. This practice, however, is labor-intensive and ineffective. To address this problem, we analyze the traffic generated by human players versus game bots and propose general solutions to identify game bots. Taking Ragnarok Online as our subject, we study the traffic generated by human players and game bots. We find that their traffic is distinguishable by 1 the regularity in the release time of client commands, 2 the trend and magnitude of traffic burstiness in multiple time scales, and 3 the sensitivity to different network conditions. Based on these findings, we propose four strategies and two ensemble schemes to identify bots. Finally, we discuss the robustness of the proposed methods against countermeasures of bot developers, and consider a number of possible ways to manage the increasingly serious bot problem.

TCGA study identifies genomic features of cervical cancer

Science.gov (United States)

Investigators with The Cancer Genome Atlas (TCGA) Research Network have identified novel genomic and molecular characteristics of cervical cancer that will aid in subclassification of the disease and may help target therapies that are most appropriate for each patient.

Convergent evolution towards high net carbon gain efficiency contributes to the shade tolerance of palms (Arecaceae)

NARCIS (Netherlands)

Ma, Ren Yi; Zhang, Jiao Lin; Cavaleri, Molly A.; Sterck, Frank; Strijk, J.S.; Cao, Kun Fang

2015-01-01

Most palm species occur in the shaded lower strata of tropical rain forests, but how their traits relate to shade adaptation is poorly understood. We hypothesized that palms are adapted to the shade of their native habitats by convergent evolution towards high net carbon gain efficiency (CGEn),

Factores que influyen en la embriogénesis somática in vitro de palmas (Arecaceae

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María Viñas

2011-07-01

Somatic embryogenesis (SE is an in vitro developmental pathway that exhibits a number of advantages over other techniques for regeneration of palms. This technique has great potential to overcome the limitations observed when trying to propagate these plants clonally using basal buds. Despite the known recalcitrance of palms for in vitro culture, good results can be obtained by using the appropriate growth regulators, explant type and developmental stage, as well as responsive genotypes. This has been partially observed in Phoenix dactylifera (date palm, Elaeis guineensis (African oil palm, Bactris gasipaes (peach palm and Cocos nucifera (coconut. Efficient protocols have been also generated in less-studied palms, such as Geonoma gamiova (an ornamental palm, Euterpe edulis (Assai palm and Areca catechu (areca palm. Induction of  SE has been achieved mainly through the use of auxins. Of these, 2,4-dichlorophenoxyacetic acid (2,4-D has been used most frequently, although in some cases (such as in peach palm and African oil palm picloram and dicamba have been employed also with good results. The most commonly used explants are young inflorescences, apical buds and leaf-basal segments. Explant size and culture medium also play an important role in obtaining good results. This review presents a compilation of the most important publications on SE in this plant family and the effect of various factors on induction and development of this pathway. Key words: Culture medium; explants; genotype; plant growth regulators; regeneration

Historical evidence of the Spanish introduction of date palm (Phoenix dactylifera L., Arecaceae) into the Americas

Science.gov (United States)

America’s date palm (Phoenix dactylifera L.) groves can be found from 36o N Lat. (USA) to 21o S Lat. (Chile) and from 63o W Long. (Venezuela) to 117o W Long. (USA), at elevations from sea level 2000 m (Colombia). However, successful production of ripe dates is possible only in the arid regions of Pe...

A robust and well-resolved phylogeny of Bactridinae (Arecaceae) based on plastid and nuclear DNA sequences

DEFF Research Database (Denmark)

Eiserhardt, Wolf L.; Pintaud, Jean-Christophe; Asmussen-Lange, Conny

as well as most of the currently accepted infrageneric taxa and recently proposed informal groups. Analyses are based on five plastid DNA regions (matK, trnQ-rps16, rps16 intron, trnD-trnT, trnL-trnF) and three nuclear markers (PRK, RPB2, ITS). A combined dataset was analysed with likelihood and parsimony...

Aspectos da ecologia de arecaceae em áreas de cerrado Sensu Stricto do Distrito Federal, Brasil

OpenAIRE

Bruno, Morgana Maria Arcanjo

2014-01-01

Em resposta à estacionalidade climática dos ambientes, as espécies vegetais possuem mecanismos que tornam possível sua sobrevivência e reprodução durante o período desfavorável ao desenvolvimento. Sítios ativos ou sumidouros de recursos (folhas e gemas foliares, flores e gemas florais) competem por água, nutrientes e metabólitos dentro da planta, levando a uma distribuição temporal das funções como produção de flores e folhas. O resultado disto é a geração de um padrão fenológico típico da es...

Convergent Evolution towards High Net Carbon Gain Efficiency Contributes to the Shade Tolerance of Palms (Arecaceae.

Directory of Open Access Journals (Sweden)

Ren-Yi Ma

Full Text Available Most palm species occur in the shaded lower strata of tropical rain forests, but how their traits relate to shade adaptation is poorly understood. We hypothesized that palms are adapted to the shade of their native habitats by convergent evolution towards high net carbon gain efficiency (CGEn, which is given by the maximum photosynthetic rate to dark respiration rate ratio. Leaf mass per area, maximum photosynthetic rate, dark respiration and N and P concentrations were measured in 80 palm species grown in a common garden, and combined with data of 30 palm species growing in their native habitats. Compared to other species from the global leaf economics data, dicotyledonous broad-leaved trees in tropical rainforest or other monocots in the global leaf economics data, palms possessed consistently higher CGEn, achieved by lowered dark respiration and fairly high foliar P concentration. Combined phylogenetic analyses of evolutionary signal and trait evolution revealed convergent evolution towards high CGEn in palms. We conclude that high CGEn is an evolutionary strategy that enables palms to better adapt to shady environments than coexisting dicot tree species, and may convey advantages in competing with them in the tropical forest understory. These findings provide important insights for understanding the evolution and ecology of palms, and for understanding plant shade adaptations of lower rainforest strata. Moreover, given the dominant role of palms in tropical forests, these findings are important for modelling carbon and nutrient cycling in tropical forest ecosystems.

Identifying Bitcoin users by transaction behavior

Science.gov (United States)

Monaco, John V.

2015-05-01

Digital currencies, such as Bitcoin, offer convenience and security to criminals operating in the black marketplace. Some Bitcoin marketplaces, such as Silk Road, even claim anonymity. This claim contradicts the findings in this work, where long term transactional behavior is used to identify and verify account holders. Transaction timestamps and network properties observed over time contribute to this finding. The timestamp of each transaction is the result of many factors: the desire purchase an item, daily schedule and activities, as well as hardware and network latency. Dynamic network properties of the transaction, such as coin flow and the number of edge outputs and inputs, contribute further to reveal account identity. In this paper, we propose a novel methodology for identifying and verifying Bitcoin users based on the observation of Bitcoin transactions over time. The behavior we attempt to quantify roughly occurs in the social band of Newell's time scale. A subset of the Blockchain 230686 is taken, selecting users that initiated between 100 and 1000 unique transactions per month for at least 6 different months. This dataset shows evidence of being nonrandom and nonlinear, thus a dynamical systems approach is taken. Classification and authentication accuracies are obtained under various representations of the monthly Bitcoin samples: outgoing transactions, as well as both outgoing and incoming transactions are considered, along with the timing and dynamic network properties of transaction sequences. The most appropriate representations of monthly Bitcoin samples are proposed. Results show an inherent lack of anonymity by exploiting patterns in long-term transactional behavior.

IDENTIFYING COMPETENCIES OF VOLUNTEER BOARD MEMBERS OF COMMUNITY SPORTS CLUBS

OpenAIRE

A. BALDUCK; A. VAN ROSSEM; M. BUELENS

2009-01-01

This study contributes to the emerging empirical studies on roles and responsibilities of boards in nonprofit organizations by identifying competencies of volunteer board members. We identified how two types of constituents—volunteer board members and sports members—perceived competencies of volunteer board members in community sports clubs. We used the repertory grid technique to draw cognitive maps and to reveal the perceived reality of these constituents. Our results suggest that constitue...

The Complexity of Identifying Large Equivalence Classes

DEFF Research Database (Denmark)

Skyum, Sven; Frandsen, Gudmund Skovbjerg; Miltersen, Peter Bro

1999-01-01

We prove that at least 3k−4/k(2k−3)(n/2) – O(k)equivalence tests and no more than 2/k (n/2) + O(n) equivalence tests are needed in the worst case to identify the equivalence classes with at least k members in set of n elements. The upper bound is an improvement by a factor 2 compared to known res...

X-factor for innovation: identifying future excellent professionals

NARCIS (Netherlands)

den Hertog, J.H.

2016-01-01

In this study we wanted to identify which type of individual is capable of achieving professional excellence. Our main question therefore read: which individual antecedents predict professional excellence? We chose to focus on personality traits and specifically on proactive personality - the

No Exit: Identifying Avoidable Terminal Oncology Intensive Care Unit Hospitalizations

Science.gov (United States)

Hantel, Andrew; Wroblewski, Kristen; Balachandran, Jay S.; Chow, Selina; DeBoer, Rebecca; Fleming, Gini F.; Hahn, Olwen M.; Kline, Justin; Liu, Hongtao; Patel, Bhakti K.; Verma, Anshu; Witt, Leah J.; Fukui, Mayumi; Kumar, Aditi; Howell, Michael D.; Polite, Blase N.

2016-01-01

Purpose: Terminal oncology intensive care unit (ICU) hospitalizations are associated with high costs and inferior quality of care. This study identifies and characterizes potentially avoidable terminal admissions of oncology patients to ICUs. Methods: This was a retrospective case series of patients cared for in an academic medical center’s ambulatory oncology practice who died in an ICU during July 1, 2012 to June 30, 2013. An oncologist, intensivist, and hospitalist reviewed each patient’s electronic health record from 3 months preceding terminal hospitalization until death. The primary outcome was the proportion of terminal ICU hospitalizations identified as potentially avoidable by two or more reviewers. Univariate and multivariate analysis were performed to identify characteristics associated with avoidable terminal ICU hospitalizations. Results: Seventy-two patients met inclusion criteria. The majority had solid tumor malignancies (71%), poor performance status (51%), and multiple encounters with the health care system. Despite high-intensity health care utilization, only 25% had documented advance directives. During a 4-day median ICU length of stay, 81% were intubated and 39% had cardiopulmonary resuscitation. Forty-seven percent of these hospitalizations were identified as potentially avoidable. Avoidable hospitalizations were associated with factors including: worse performance status before admission (median 2 v 1; P = .01), worse Charlson comorbidity score (median 8.5 v 7.0, P = .04), reason for hospitalization (P = .006), and number of prior hospitalizations (median 2 v 1; P = .05). Conclusion: Given the high frequency of avoidable terminal ICU hospitalizations, health care leaders should develop strategies to prospectively identify patients at high risk and formulate interventions to improve end-of-life care. PMID:27601514

Genomic analysis identifies masqueraders of full-term cerebral palsy.

Science.gov (United States)

Takezawa, Yusuke; Kikuchi, Atsuo; Haginoya, Kazuhiro; Niihori, Tetsuya; Numata-Uematsu, Yurika; Inui, Takehiko; Yamamura-Suzuki, Saeko; Miyabayashi, Takuya; Anzai, Mai; Suzuki-Muromoto, Sato; Okubo, Yukimune; Endo, Wakaba; Togashi, Noriko; Kobayashi, Yasuko; Onuma, Akira; Funayama, Ryo; Shirota, Matsuyuki; Nakayama, Keiko; Aoki, Yoko; Kure, Shigeo

2018-05-01

Cerebral palsy is a common, heterogeneous neurodevelopmental disorder that causes movement and postural disabilities. Recent studies have suggested genetic diseases can be misdiagnosed as cerebral palsy. We hypothesized that two simple criteria, that is, full-term births and nonspecific brain MRI findings, are keys to extracting masqueraders among cerebral palsy cases due to the following: (1) preterm infants are susceptible to multiple environmental factors and therefore demonstrate an increased risk of cerebral palsy and (2) brain MRI assessment is essential for excluding environmental causes and other particular disorders. A total of 107 patients-all full-term births-without specific findings on brain MRI were identified among 897 patients diagnosed with cerebral palsy who were followed at our center. DNA samples were available for 17 of the 107 cases for trio whole-exome sequencing and array comparative genomic hybridization. We prioritized variants in genes known to be relevant in neurodevelopmental diseases and evaluated their pathogenicity according to the American College of Medical Genetics guidelines. Pathogenic/likely pathogenic candidate variants were identified in 9 of 17 cases (52.9%) within eight genes: CTNNB1 , CYP2U1 , SPAST , GNAO1 , CACNA1A , AMPD2 , STXBP1 , and SCN2A . Five identified variants had previously been reported. No pathogenic copy number variations were identified. The AMPD2 missense variant and the splice-site variants in CTNNB1 and AMPD2 were validated by in vitro functional experiments. The high rate of detecting causative genetic variants (52.9%) suggests that patients diagnosed with cerebral palsy in full-term births without specific MRI findings may include genetic diseases masquerading as cerebral palsy.

Identifying clusters of active transportation using spatial scan statistics.

Science.gov (United States)

Huang, Lan; Stinchcomb, David G; Pickle, Linda W; Dill, Jennifer; Berrigan, David

2009-08-01

There is an intense interest in the possibility that neighborhood characteristics influence active transportation such as walking or biking. The purpose of this paper is to illustrate how a spatial cluster identification method can evaluate the geographic variation of active transportation and identify neighborhoods with unusually high/low levels of active transportation. Self-reported walking/biking prevalence, demographic characteristics, street connectivity variables, and neighborhood socioeconomic data were collected from respondents to the 2001 California Health Interview Survey (CHIS; N=10,688) in Los Angeles County (LAC) and San Diego County (SDC). Spatial scan statistics were used to identify clusters of high or low prevalence (with and without age-adjustment) and the quantity of time spent walking and biking. The data, a subset from the 2001 CHIS, were analyzed in 2007-2008. Geographic clusters of significantly high or low prevalence of walking and biking were detected in LAC and SDC. Structural variables such as street connectivity and shorter block lengths are consistently associated with higher levels of active transportation, but associations between active transportation and socioeconomic variables at the individual and neighborhood levels are mixed. Only one cluster with less time spent walking and biking among walkers/bikers was detected in LAC, and this was of borderline significance. Age-adjustment affects the clustering pattern of walking/biking prevalence in LAC, but not in SDC. The use of spatial scan statistics to identify significant clustering of health behaviors such as active transportation adds to the more traditional regression analysis that examines associations between behavior and environmental factors by identifying specific geographic areas with unusual levels of the behavior independent of predefined administrative units.

Assessing quantitative EEG spectrograms to identify non-epileptic events.

Science.gov (United States)

Goenka, Ajay; Boro, Alexis; Yozawitz, Elissa

2017-09-01

To evaluate the sensitivity and specificity of quantitative EEG (QEEG) spectrograms in order to distinguish epileptic from non-epileptic events. Seventeen patients with paroxysmal non-epileptic events, captured during EEG monitoring, were retrospectively assessed using QEEG spectrograms. These patients were compared to a control group of 13 consecutive patients (ages 25-60 years) with epileptic seizures of similar semiology. Assessment of raw EEG was employed as the gold standard against which epileptic and non-epileptic events were validated. QEEG spectrograms, available using Persyst 12 EEG system integration software, were each assessed with respect to their usefulness to distinguish epileptic from non-epileptic seizures. The given spectrogram was interpreted as indicating a seizure if, at the time of the clinically identified event, it showed a visually significant change from baseline. Eighty-two clinically identified paroxysmal events were analysed (46 non-epileptic and 36 epileptic). The "seizure detector trend analysis" spectrogram correctly classified 33/46 (71%) non-epileptic events (no seizure indicated during a clinically identified event) vs. 29/36 (81%) epileptic seizures (seizure indicated during a clinically identified event) (p=0.013). Similarly, "rhythmicity spectrogram", FFT spectrogram, "asymmetry relative spectrogram", and integrated-amplitude EEG spectrogram detected 28/46 (61%), 30/46 (65%), 22/46 (48%) and 27/46 (59%) non-epileptic events vs. 27/36 (75%), 25/36 (69%), 25/36 (69%) and 27/36 (75%) epileptic events, respectively. High sensitivities and specificities for QEEG seizure detection analyses suggest that QEEG may have a role at the bedside to facilitate early differentiation between epileptic seizures and non-epileptic events in order to avoid unnecessary administration of antiepileptic drugs and possible iatrogenic consequences.

Identifying randomized clinical trials in Spanish-language dermatology journals.

Science.gov (United States)

Sanclemente, G; Pardo, H; Sánchez, S; Bonfill, X

2015-06-01

The necessary foundation for good clinical practice lies in knowledge derived from clinical research. Evidence from randomized clinical trials (RCTs) is the pillar on which decisions about therapy are based. To search exhaustively and rigorously to identify RCTs in dermatology journals published in Spanish. We located dermatology journals through the following search engines and indexes: PubMed, LILACS, SciELO, Periódica, Latindex, Índice Médico Español, C-17, IBECS, EMBASE, and IMBIOMED. We also sought information through dermatology associations and dermatologists in countries where Spanish was the usual language of publication, and we searched the Internet (Google). Afterwards we searched the journals electronically and manually to identify RCTs in all available volumes and issues, checking from the year publication started through 2012. Of 28 journals identified, we included 21 in the search. We found a total of 144 RCTs published since 1969; 78 (54%) were in Latin American journals and 66 (46%) were in Spanish journals. The most frequent disease contexts for RCTs in Spanish journals were psoriasis, mycoses, and acne vulgaris. In Latin American journals, the most frequent disease contexts were common warts, mycoses, acne vulgaris, and skin ulcers on the lower limbs. Manual searches identified more RCTs than electronic searches. Manual searches found a larger number of RCTs. Relatively fewer RCTs are published in Spanish and Latin American journals than in English-language journals. Internet facilitated access to full texts published by many journals; however, free open access to these texts is still unavailable and a large number of journal issues are still not posted online. Copyright © 2014 Elsevier España, S.L.U. and AEDV. All rights reserved.

An Objective Approach to Identify Spectral Distinctiveness for Hearing Impairment

Directory of Open Access Journals (Sweden)

Yeou-Jiunn Chen

2013-01-01

Full Text Available To facilitate the process of developing speech perception, speech-language pathologists have to teach a subject with hearing loss the differences between two syllables by manually enhancing acoustic cues of speech. However, this process is time consuming and difficult. Thus, this study proposes an objective approach to automatically identify the regions of spectral distinctiveness between two syllables, which is used for speech-perception training. To accurately represent the characteristics of speech, mel-frequency cepstrum coefficients are selected as analytical parameters. The mismatch between two syllables in time domain is handled by dynamic time warping. Further, a filter bank is adopted to estimate the components in different frequency bands, which are also represented as mel-frequency cepstrum coefficients. The spectral distinctiveness in different frequency bands is then easily estimated by using Euclidean metrics. Finally, a morphological gradient operator is applied to automatically identify the regions of spectral distinctiveness. To evaluate the proposed approach, the identified regions are manipulated and then the manipulated syllables are measured by a close-set based speech-perception test. The experimental results demonstrated that the identified regions of spectral distinctiveness are very useful in speech perception, which indeed can help speech-language pathologists in speech-perception training.

A Manual to Identify Sources of Fluvial Sediment | Science ...

Science.gov (United States)

Sedimentation is one of the main causes of stream/river aquatic life use impairments in R3. Currently states lack standard guidance on appropriate tools available to quantify sediment sources and develop sediment budgets in TMDL Development. Methods for distinguishing sediment types for TMDL development will focus stream restoration and soil conservation efforts in strategic locations in a watershed and may better target appropriate BMPs to achieve sediment load reductions. Properly identifying sediment sources in a TMDL will also help focus NPDES permitting, stream restoration activities and other TMDL implementation efforts. This project will focus on developing a framework that will be published as a guidance document that outlines steps and approaches to identify the significant sources of fine-grained sediment in 303D listed watersheds. In this framework, the sediment-fingerprinting and sediment budget approaches will be emphasized. This project will focus on developing a framework that will be published as a guidance document that outlines steps and approaches to identify the significant sources of fine-grained sediment in 303D listed watersheds. In this framework, the sediment-fingerprinting and sediment budget approaches will be emphasized.

Identifying, studying and making good use of macromolecular crystals

Energy Technology Data Exchange (ETDEWEB)

Calero, Guillermo [University of Pittsburgh Medical School, Pittsburgh, PA 15261 (United States); Cohen, Aina E. [SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025 (United States); Luft, Joseph R. [Hauptman–Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203 (United States); State University of New York at Buffalo, 700 Ellicott Street, Buffalo, NY 14203 (United States); Newman, Janet [CSIRO Collaborative Crystallisation Centre, 343 Royal Parade, Parkville, Victoria 3052 (Australia); Snell, Edward H., E-mail: esnell@hwi.buffalo.edu [Hauptman–Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203 (United States); State University of New York at Buffalo, 700 Ellicott Street, Buffalo, NY 14203 (United States); University of Pittsburgh Medical School, Pittsburgh, PA 15261 (United States)

2014-07-25

As technology advances, the crystal volume that can be used to collect useful X-ray diffraction data decreases. The technologies available to detect and study growing crystals beyond the optical resolution limit and methods to successfully place the crystal into the X-ray beam are discussed. Structural biology has contributed tremendous knowledge to the understanding of life on the molecular scale. The Protein Data Bank, a depository of this structural knowledge, currently contains over 100 000 protein structures, with the majority stemming from X-ray crystallography. As the name might suggest, crystallography requires crystals. As detectors become more sensitive and X-ray sources more intense, the notion of a crystal is gradually changing from one large enough to embellish expensive jewellery to objects that have external dimensions of the order of the wavelength of visible light. Identifying these crystals is a prerequisite to their study. This paper discusses developments in identifying these crystals during crystallization screening and distinguishing them from other potential outcomes. The practical aspects of ensuring that once a crystal is identified it can then be positioned in the X-ray beam for data collection are also addressed.

Identifying, studying and making good use of macromolecular crystals

International Nuclear Information System (INIS)

Calero, Guillermo; Cohen, Aina E.; Luft, Joseph R.; Newman, Janet; Snell, Edward H.

2014-01-01

As technology advances, the crystal volume that can be used to collect useful X-ray diffraction data decreases. The technologies available to detect and study growing crystals beyond the optical resolution limit and methods to successfully place the crystal into the X-ray beam are discussed. Structural biology has contributed tremendous knowledge to the understanding of life on the molecular scale. The Protein Data Bank, a depository of this structural knowledge, currently contains over 100 000 protein structures, with the majority stemming from X-ray crystallography. As the name might suggest, crystallography requires crystals. As detectors become more sensitive and X-ray sources more intense, the notion of a crystal is gradually changing from one large enough to embellish expensive jewellery to objects that have external dimensions of the order of the wavelength of visible light. Identifying these crystals is a prerequisite to their study. This paper discusses developments in identifying these crystals during crystallization screening and distinguishing them from other potential outcomes. The practical aspects of ensuring that once a crystal is identified it can then be positioned in the X-ray beam for data collection are also addressed

Non-identifier based adaptive control in mechatronics theory and application

CERN Document Server

Hackl, Christoph M

2017-01-01

This book introduces non-identifier-based adaptive control (with and without internal model) and its application to the current, speed and position control of mechatronic systems such as electrical synchronous machines, wind turbine systems, industrial servo systems, and rigid-link, revolute-joint robots. In mechatronics, there is often only rough knowledge of the system. Due to parameter uncertainties, nonlinearities and unknown disturbances, model-based control strategies can reach their performance or stability limits without iterative controller design and performance evaluation, or system identification and parameter estimation. The non-identifier-based adaptive control presented is an alternative that neither identifies the system nor estimates its parameters but ensures stability. The adaptive controllers are easy to implement, compensate for disturbances and are inherently robust to parameter uncertainties and nonlinearities. For controller implementation only structural system knowledge (like relativ...

DNA barcoding as a means for identifying medicinal plants of Pakistan

International Nuclear Information System (INIS)

Schori, M.; Showalter, A.M.

2011-01-01

DNA barcoding involves the generation of DNA sequencing data from particular genetic regions in an organism and the use of these sequence data to identify or 'barcode' that organism and distinguish it from other species. Here, DNA barcoding is being used to identify several medicinal plants found in Pakistan and distinguished them from other similar species. Several challenges to the successful implementation of plant DNA barcoding are presented and discussed. Despite these challenges, DNA barcoding has the potential to uniquely identify medicinal plants and provide quality control and standardization of the plant material supplied to the pharmaceutical industry. (author)

Coastal upwelling ecosystems are often identified as regions ...

African Journals Online (AJOL)

spamer

... are often identified as regions susceptible to seasonal blooms of harmful ... that the bay acts as a net importer of bottom water and net exporter of surface waters over a synoptic cycle. This ... waves or wind stress on the surface friction layer.

Identifying cognitive predictors of reactive and proactive aggression

NARCIS (Netherlands)

Brugman, S.; Lobbestael, J.; Arntz, A.R.; Cima, M.; Schumann, T.; Dambacher, F.

2015-01-01

The aim of this study was to identify implicit cognitive predictors of aggressive behavior. Specifically, the predictive value of an attentional bias for aggressive stimuli and automatic association of the self and aggression was examined for reactive and proactive aggressive behavior in a

From control system security indices to attack identifiability

NARCIS (Netherlands)

Herdeiro Teixeira, A.M.; Sandberg, H

2016-01-01

In this paper, we investigate detectability and identifiability of attacks on linear dynamical systems that are subjected to external disturbances. We generalize a concept for a security index, which was previously introduced for static systems. The index exactly quantifies the resources

Could cognitive vulnerability identify high-risk subjects for schizophrenia?

Science.gov (United States)

Sarfati, Yves; Hardy-Baylé, Marie-Christine

2002-12-08

This review puts into questions the possible role of cognitive vulnerability markers in prediction and prevention of schizophrenia. Until recently, none of the identified cognitive anomalies has been proved to be definitive. However, as new promising candidates are emerging (DS-CPT, CPT-IP, P suppression, Saccadic Eye Movements), the predictive value of these trait-type anomalies may be criticized regarding four issues, which are discussed: technical, metrological, theoretical, and clinical. As things stand, the existence of a cognitive vulnerability marker, which testify to a permanent pathological trait, does not constitute a sufficient factor to identify and treat subjects who are at risk for schizophrenia. Copyright 2002 Wiley-Liss, Inc.

A Method to Identify Nucleolus-Associated Chromatin Domains (NADs).

Science.gov (United States)

Carpentier, Marie-Christine; Picart-Picolo, Ariadna; Pontvianne, Frédéric

2018-01-01

The nuclear context needs to be taken into consideration to better understand the mechanisms shaping the epigenome and its organization, and therefore its impact on gene expression. For example, in Arabidopsis, heterochromatin is preferentially localized at the nuclear and the nucleolar periphery. Although chromatin domains associating with the nuclear periphery remain to be identified in plant cells, Nucleolus Associated chromatin Domains (NADs) can be identified thanks to a protocol allowing the isolation of pure nucleoli. We describe here the protocol enabling the identification of NADs in Arabidopsis. Providing the transfer of a nucleolus marker as described here in other crop species, this protocol is broadly applicable.

A Note on the Identifiability of Generalized Linear Mixed Models

DEFF Research Database (Denmark)

Labouriau, Rodrigo

2014-01-01

I present here a simple proof that, under general regularity conditions, the standard parametrization of generalized linear mixed model is identifiable. The proof is based on the assumptions of generalized linear mixed models on the first and second order moments and some general mild regularity...... conditions, and, therefore, is extensible to quasi-likelihood based generalized linear models. In particular, binomial and Poisson mixed models with dispersion parameter are identifiable when equipped with the standard parametrization...

Identifying Emotions on the Basis of Neural Activation.

Directory of Open Access Journals (Sweden)

Karim S Kassam

Full Text Available We attempt to determine the discriminability and organization of neural activation corresponding to the experience of specific emotions. Method actors were asked to self-induce nine emotional states (anger, disgust, envy, fear, happiness, lust, pride, sadness, and shame while in an fMRI scanner. Using a Gaussian Naïve Bayes pooled variance classifier, we demonstrate the ability to identify specific emotions experienced by an individual at well over chance accuracy on the basis of: 1 neural activation of the same individual in other trials, 2 neural activation of other individuals who experienced similar trials, and 3 neural activation of the same individual to a qualitatively different type of emotion induction. Factor analysis identified valence, arousal, sociality, and lust as dimensions underlying the activation patterns. These results suggest a structure for neural representations of emotion and inform theories of emotional processing.

Obesogenic family types identified through latent profile analysis.

Science.gov (United States)

Martinson, Brian C; VazquezBenitez, Gabriela; Patnode, Carrie D; Hearst, Mary O; Sherwood, Nancy E; Parker, Emily D; Sirard, John; Pasch, Keryn E; Lytle, Leslie

2011-10-01

Obesity may cluster in families due to shared physical and social environments. This study aims to identify family typologies of obesity risk based on family environments. Using 2007-2008 data from 706 parent/youth dyads in Minnesota, we applied latent profile analysis and general linear models to evaluate associations between family typologies and body mass index (BMI) of youth and parents. Three typologies described most families with 18.8% "Unenriched/Obesogenic," 16.9% "Risky Consumer," and 64.3% "Healthy Consumer/Salutogenic." After adjustment for demographic and socioeconomic factors, parent BMI and youth BMI Z-scores were higher in unenriched/obesogenic families (BMI difference = 2.7, p typology. In contrast, parent BMI and youth BMI Z-scores were similar in the risky consumer families relative to those in healthy consumer/salutogenic type. We can identify family types differing in obesity risks with implications for public health interventions.

An effective automatic procedure for testing parameter identifiability of HIV/AIDS models.

Science.gov (United States)

Saccomani, Maria Pia

2011-08-01

Realistic HIV models tend to be rather complex and many recent models proposed in the literature could not yet be analyzed by traditional identifiability testing techniques. In this paper, we check a priori global identifiability of some of these nonlinear HIV models taken from the recent literature, by using a differential algebra algorithm based on previous work of the author. The algorithm is implemented in a software tool, called DAISY (Differential Algebra for Identifiability of SYstems), which has been recently released (DAISY is freely available on the web site http://www.dei.unipd.it/~pia/ ). The software can be used to automatically check global identifiability of (linear and) nonlinear models described by polynomial or rational differential equations, thus providing a general and reliable tool to test global identifiability of several HIV models proposed in the literature. It can be used by researchers with a minimum of mathematical background.

Identifying and Selecting Plants for the Landscape. Volume 23, Number 5.

Science.gov (United States)

Rodekohr, Sherie; Harris, Clark Richard

This handbook on identifying and selecting landscape plants can be used as a reference in landscaping courses or on an individual basis. The first of two sections, Identifying Plants for the Landscape, contains the following tables: shade tree identification; flowering tree identification; evergreen tree identification; flowering shrub…

Validation of search filters for identifying pediatric studies in PubMed

NARCIS (Netherlands)

Leclercq, Edith; Leeflang, Mariska M. G.; van Dalen, Elvira C.; Kremer, Leontien C. M.

2013-01-01

To identify and validate PubMed search filters for retrieving studies including children and to develop a new pediatric search filter for PubMed. We developed 2 different datasets of studies to evaluate the performance of the identified pediatric search filters, expressed in terms of sensitivity,

Spectroscopy methods for identifying the country of origin

Science.gov (United States)

Hondrogiannis, Ellen; Ehrlinger, Erin; Miziolek, Andrzej W.

2013-05-01

There is a need in many industries and government functions to identify the source of origin for various materials. For example, the food industry needs to ensure that the claimed source of some of the food products (e.g. coffee, spices) are in fact legitimate due to the variation of quality from different source locations world-wide. Another example is to identify the source country for imported commodities going through Customs so as to assess the correct tariff which varies depending on the source country. Laser Induced Breakdown Spectroscopy (LIBS) holds promise for being a field-portable tool for rapid identification of the country of origin of various materials. Recent research at Towson University has identified the elemental markers needed for discrimination of select spices back to their country of origin using wavelength dispersive X-ray fluorescence (WDXRF). The WDXRF device, however, is not particularly suitable for convenient and fast field analysis. We are extending this study to evaluate the potential of a benchtop commercial LIBS device that could be located at ports of entry and to compare its performance with WDXRF. Our initial study on the spice cumin has demonstrated that discriminant function models can not only be created with 100% separation between the 4 countries of origin (China, India, Syria, and Turkey), but also when tested they show 100% correct matching to the country of origin. This study adds to the growing number of publications that indicate the power of LIBS elemental fingerprinting for provenance determinations.

Crossing Thresholds: Identifying conceptual transitions in postsecondary teaching

Directory of Open Access Journals (Sweden)

Susan Wilcox

2013-12-01

Full Text Available In this paper we report on research we conducted to begin the process of identifying threshold concepts in the field of postsecondary teaching. Meyer & Land (2006 propose that within all disciplinary fields there seem to be particular threshold concepts that serve as gateways, opening up new and previously inaccessible ways of thinking and practicing. We developed a series of questions focusing on the “troublesome” and “transformative” characteristics of threshold concepts and asked these questions of several constituent groups, including those who are new to practice and the body of knowledge in postsecondary teaching and those who are already knowledgeable and/or experienced in the field. Based on our interpretation of participants’ responses, we identified four recognized concepts in the field of postsecondary teaching as potential threshold concepts in this field: Assessment for/as learning; Learning-centred teaching; Accommodation for diversity; and, Context-driven practice. Our findings suggest that threshold concepts are relevant to the field of postsecondary teaching. Through this work, we hope to help educational developers and faculty members consider what is involved in learning to teach and developing teaching expertise, and to encourage critical discussion about the teaching development “curriculum” in postsecondary settings. Threshold concepts arise as a field develops and are defined as practitioners and scholars in the field define their field. At this stage, we believe the real value of threshold concepts for postsecondary teaching lies in the discussion that arises in the process of identifying and naming the concepts.

Identifying subgroups of CERME affect research papers

OpenAIRE

Hannula, Markku S.; Garcia Moreno-Esteva, Enrique

2017-01-01

Research in mathematics related affect uses a variety of theoretical frameworks. Three different dimensions have been suggested as significant to characterize concepts in this area: (1) emotional, motivational, and cognitive aspects of affect, (2) state and trait aspects of affect, and (3) physiological, psychological, and sociological level of theorizing affect. In this study, we used the information in reference lists and graph theory to identify Graph Communities (coherent clusters) of res...

Modelling intelligence-led policing to identify its potential

NARCIS (Netherlands)

Hengst-Bruggeling, M. den; Graaf, H.A.L.M. de; Scheepstal, P.G.M. van

2014-01-01

lntelligence-led policing is a concept of policing that has been applied throughout the world. Despite some encouraging reports, the effect of intelligence-led policing is largely unknown. This paper presents a method with which it is possible to identify intelligence-led policing's potential to

45 CFR 630.230 - How and when must I identify workplaces?

Science.gov (United States)

2010-10-01

... 45 Public Welfare 3 2010-10-01 2010-10-01 false How and when must I identify workplaces? 630.230 Section 630.230 Public Welfare Regulations Relating to Public Welfare (Continued) NATIONAL SCIENCE..., performers in concert halls or radio studios). (c) If you identified workplaces to the National Science...