Earthworm Lumbricus rubellus MT-2: Metal Binding and Protein Folding of a True Cadmium-MT

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Gregory R. Kowald

2016-01-01

Full Text Available Earthworms express, as most animals, metallothioneins (MTs—small, cysteine-rich proteins that bind d10 metal ions (Zn(II, Cd(II, or Cu(I in clusters. Three MT homologues are known for Lumbricus rubellus, the common red earthworm, one of which, wMT-2, is strongly induced by exposure of worms to cadmium. This study concerns composition, metal binding affinity and metal-dependent protein folding of wMT-2 expressed recombinantly and purified in the presence of Cd(II and Zn(II. Crucially, whilst a single Cd7wMT-2 species was isolated from wMT-2-expressing E. coli cultures supplemented with Cd(II, expressions in the presence of Zn(II yielded mixtures. The average affinities of wMT-2 determined for either Cd(II or Zn(II are both within normal ranges for MTs; hence, differential behaviour cannot be explained on the basis of overall affinity. Therefore, the protein folding properties of Cd- and Zn-wMT-2 were compared by 1H NMR spectroscopy. This comparison revealed that the protein fold is better defined in the presence of cadmium than in the presence of zinc. These differences in folding and dynamics may be at the root of the differential behaviour of the cadmium- and zinc-bound protein in vitro, and may ultimately also help in distinguishing zinc and cadmium in the earthworm in vivo.

Combined chemical (fluoranthene) and drought effects on Lumbricus rubellus demonstrate the applicability of the independent action model for multiple stressor assessment.

Science.gov (United States)

Long, Sara M; Reichenberg, Fredrik; Lister, Lindsay J; Hankard, Peter K; Townsend, Joanna; Mayer, Philipp; Wright, Julian; Holmstrup, Martin; Svendsen, Claus; Spurgeon, David J

2009-03-01

The combined effect of a chemical (fluoranthene) and a nonchemical stress (reduced soil moisture content) to the widely distributed earthworm Lumbricus rubellus were investigated in a laboratory study. Neither fluoranthene (up to 500 microg/g) nor low soil moisture (15% below optimal) had a significant effect on the survival of the exposed worms, but a significant effect on reproduction (cocoon production rate) was found for both stressors (p IA) model that is widely used in pharmacology and chemical mixture risk assessment. Fitting of the IA model provided a good description of the combined stressor data (accounting for 53.7% of total variation) and was the most parsimonious model describing joint effect (i.e., the description of the data was not improved by addition of further parameters accounting for synergism or antagonism). Thus, the independent action of the two responses was further supported by measurement of internal fluoranthene exposure. The chemical activity of fluoranthene in worm tissue was correlated only with soil fluoranthene concentration and not with soil moisture content. Taken together these results suggest that the IA model can help interpret the joint effects of chemical and nonchemical stressors. Such analyses should, however, be done with caution since the literature data set suggests that there may be cases where interactions between stressors result in joint effects that differ significantly from IA predictions.

Bioactive protein fraction DLBS1033 containing lumbrokinase isolated from Lumbricus rubellus: ex vivo, in vivo, and pharmaceutic studies

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Tjandrawinata RR

2014-09-01

Full Text Available Raymond R Tjandrawinata,1 Jessica Trisina,1 Puji Rahayu,1 Lorentius Agung Prasetya,1 Aang Hanafiah,2 Heni Rachmawati3 1Dexa Laboratories of Biomolecular Sciences, Dexa Medica, Cikarang, Indonesia; 2National Nuclear Energy Agency, Bandung, Indonesia; 3School of Pharmacy, Bandung Institute of Technology, Bandung, Indonesia Abstract: DLBS1033 is a bioactive protein fraction isolated from Lumbricus rubellus that tends to be unstable when exposed to the gastrointestinal environment. Accordingly, appropriate pharmaceutical development is needed to maximize absorption of the protein fraction in the gastrointestinal tract. In vitro, ex vivo, and in vivo stability assays were performed to study the stability of the bioactive protein fraction in gastric conditions. The bioactive protein fraction DLBS1033 was found to be unstable at low pH and in gastric fluid. The “enteric coating” formulation showed no leakage in gastric fluid–like medium and possessed a good release profile in simulated intestinal medium. DLBS1033 was absorbed through the small intestine in an intact protein form, confirmed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS PAGE analysis. This result confirmed that an enteric coating formula using methacrylic acid copolymer could protect DLBS1033 from the acidic condition of the stomach by preventing the release of DLBS1033 in the stomach, while promoting its release when reaching the intestine. From the blood concentration–versus-time curve, 99mTc-DLBS1033 showed a circulation half-life of 70 minutes. This relatively long biological half-life supports its function as a thrombolytic protein. Thus, an enteric delivery system is considered the best approach for DLBS1033 as an oral thrombolytic agent. Keywords: bioactive protein fraction, enteric coated tablet, pharmacodynamic

A new class of amphiphiles: annelids; Une nouvelle classe d'amphiphiles: les annelides

Energy Technology Data Exchange (ETDEWEB)

Markovitsi, Dimitra

1983-12-14

This research thesis presents annelids, organometallic compounds which may form into organised phases. The author describes the synthesis of an amphipathic ligand of its cobaltic and cupric complexes. The formation of micelles and of thermotropic and lyotropic liquid crystals is highlighted. The copper (II) annelid environment is studied by electronic paramagnetic resonance spectroscopy. The author demonstrates, in micellar phase, the effect of molecular cooperativity on acid-base balance, on metallic ion complexation, on the photo-sensitized electronic transfer, and on the formation of poly-nuclear complexes [French] Les annelides, composes organometalliques susceptibles de former des phases organisees, sont presentes. La synthese d'un ligand amphipathique et de ses complexes cobaltique et cuivrique est decrite. La formation de micelles et de cristaux liquides, thermotropes et lyotropes, a l'aide de ces amphiphiles, est mise en evidence. L'environnement de l'annelide de cuivre (II) est etudie par spectroscopie de resonance paramagnetique electronique. L'effet de la cooperativite moleculaire sur l'equilibre acidobasique, sur la complexation des ions metalliques, sur le transfert electronique photosensibilise et sur la formation des complexes polynucleaires est demontre en phase micellaire. (auteur)

Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus

NARCIS (Netherlands)

Owen, J.; Hedley, B.A.; Svendsen, C.; Wren, J.; Jonker, M.J.; Hankard, P.K.; Lister, L.J.; Stürzenbaum, S.R.; Morgan, A.J.; Spurgeon, D.J.; Blaxter, M.L.; Kille, P.

2008-01-01

Background: Natural contamination and anthropogenic pollution of soils are likely to be major determinants of functioning and survival of keystone invertebrate taxa. Soil animals will have both evolutionary adaptation and genetically programmed responses to these toxic chemicals, but mechanistic

Earthworm activity and decomposition of 14C-labelled grass root systems

NARCIS (Netherlands)

Uyl, A.; Didden, W.A.M.; Marinussen, J.

2002-01-01

Decomposition of 14C-labelled root systems of the grass species Holcus lanatus and Festuca ovina, representative of mesotrophic and oligotrophic situations, respectively, was monitored during 14 months under field conditions in the presence or absence of earthworms (Lumbricus rubellus). During the

Can commonly measurable traits explain differences in metal accumulation and toxicity in earthworm species?

NARCIS (Netherlands)

Qiu, H.; Peijnenburg, W.J.G.M.; van Gestel, C.A.M.; Vijver, M.G.

2014-01-01

There is no clear consensus in the literature on the metal accumulation pattern and sensitivity of different earthworm species. In the present study, accumulation and toxicity of Cu, Cd, Ni, and Zn in the earthworms Lumbricus rubellus (epigeic), Aporrectodea longa (anecic), and Eisenia fetida

On some Polychaetous Annelids from Curaçao

NARCIS (Netherlands)

Horst, R.

1922-01-01

Though we know already a rather large number of Polychaetous Annelids from the Caribbean Sea, hitherto, as far as I know, no Annelids have been described from the coast of the island Curaçao and I therefore was very glad, that my colleague Dr. VAN DER HORST kindly placed in my hands for

Annelids in evolutionary developmental biology and comparative genomics

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Mcdougall C.

2008-09-01

Full Text Available Annelids have had a long history in comparative embryology and morphology, which has helped to establish them in zoology textbooks as an ideal system to understand the evolution of the typical triploblastic, coelomate, protostome condition. In recent years there has been a relative upsurge in embryological data, particularly with regard to the expression and function of developmental control genes. Polychaetes, as well as other annelids such as the parasitic leech, are now also entering the age of comparative genomics. All of this comparative data has had an important impact on our views of the ancestral conditions at various levels of the animal phylogeny, including the bilaterian ancestor and the nature of the annelid ancestor. Here we review some of the recent advances made in annelid comparative development and genomics, revealing a hitherto unsuspected level of complexity in these ancestors. It is also apparent that the transition to a parasitic lifestyle leads to, or requires, extensive modifications and derivations at both the genomic and embryological levels.

A survey of the invertebrates feeding on living clover roots (Trifolium repens L.) using 32P as a radiotracer

International Nuclear Information System (INIS)

Baylis, J.P.; Cherrett, J.M.; Ford, J.B.

1986-01-01

Clover roots were labelled in the field with 32 P and the radioactive soil fauna were detected by autoradiography. The animals which consumed labelled clover roots were, in order of importance, earthworms (Aporrectodea longa, A. caliginosa and Lumbricus rubellus), weevil larvae, dipteran larvae (Bibio marci) and a few Collembola (family: Entomobryidae). (author)

Using dynamic energy budget modeling to predict the influence of temperature and food density on the effect of Cu on earthworm mediated litter consumption.

NARCIS (Netherlands)

Hobbelen, P.H.F.; van Gestel, C.A.M.

2007-01-01

The aim of this study was to predict the dependence on temperature and food density of effects of Cu on the litter consumption by the earthworm Lumbricus rubellus, using a dynamic energy budget model (DEB-model). As a measure of the effects of Cu on food consumption, EC50s (soil concentrations

The impact of fossil data on annelid phylogeny inferred from discrete morphological characters.

Science.gov (United States)

Parry, Luke A; Edgecombe, Gregory D; Eibye-Jacobsen, Danny; Vinther, Jakob

2016-08-31

As a result of their plastic body plan, the relationships of the annelid worms and even the taxonomic makeup of the phylum have long been contentious. Morphological cladistic analyses have typically recovered a monophyletic Polychaeta, with the simple-bodied forms assigned to an early-diverging clade or grade. This is in stark contrast to molecular trees, in which polychaetes are paraphyletic and include clitellates, echiurans and sipunculans. Cambrian stem group annelid body fossils are complex-bodied polychaetes that possess well-developed parapodia and paired head appendages (palps), suggesting that the root of annelids is misplaced in morphological trees. We present a reinvestigation of the morphology of key fossil taxa and include them in a comprehensive phylogenetic analysis of annelids. Analyses using probabilistic methods and both equal- and implied-weights parsimony recover paraphyletic polychaetes and support the conclusion that echiurans and clitellates are derived polychaetes. Morphological trees including fossils depict two main clades of crown-group annelids that are similar, but not identical, to Errantia and Sedentaria, the fundamental groupings in transcriptomic analyses. Removing fossils yields trees that are often less resolved and/or root the tree in greater conflict with molecular topologies. While there are many topological similarities between the analyses herein and recent phylogenomic hypotheses, differences include the exclusion of Sipuncula from Annelida and the taxa forming the deepest crown-group divergences. © 2016 The Authors.

Charles Darwin's Observations on the Behaviour of Earthworms and the Evolutionary History of a Giant Endemic Species from Germany, Lumbricus badensis (Oligochaeta: Lumbricidae)

International Nuclear Information System (INIS)

Kutschera, U.; Elliott, M.

2010-01-01

The British naturalist Charles Darwin (1809/1882) began and ended his almost 45-year-long career with observations, experiments, and theories related to earthworms. About six months before his death, Darwin published his book on The Formation of Vegetable Mould, through the Actions of Worms, With Observations on their Habits (1881). Here we describe the origin, content, and impact of Darwin's last publication on earthworms (subclass Oligochaeta, family Lumbricidae) and the role of these annelids as global ecosystem re workers (concept of bioturbation). In addition, we summarize our current knowledge on the reproductive behaviour of the common European species Lumbricus terrestris. In the second part of our account we describe the biology and evolution of the giant endemic species L. badensis from south western Germany with reference to the principle of niche construction. Bio geographic studies have shown that the last common ancestor of L. badensis, and the much smaller sister-taxon, the Atlantic-Mediterranean L. friendi, lived less than 10000 years ago. Allopatric speciation occurred via geographically isolated founder populations that were separated by the river Rhine so that today two earthworm species exist in different areas.

Charles Darwin's Observations on the Behaviour of Earthworms and the Evolutionary History of a Giant Endemic Species from Germany, Lumbricus badensis (Oligochaeta: Lumbricidae

Directory of Open Access Journals (Sweden)

U. Kutschera

2010-01-01

Full Text Available The British naturalist Charles Darwin (1809–1882 began and ended his almost 45-year-long career with observations, experiments, and theories related to earthworms. About six months before his death, Darwin published his book on The Formation of Vegetable Mould, through the Actions of Worms, With Observations on their Habits (1881. Here we describe the origin, content, and impact of Darwin's last publication on earthworms (subclass Oligochaeta, family Lumbricidae and the role of these annelids as global “ecosystem reworkers” (concept of bioturbation. In addition, we summarize our current knowledge on the reproductive behaviour of the common European species Lumbricus terrestris. In the second part of our account we describe the biology and evolution of the giant endemic species L. badensis from south western Germany with reference to the principle of niche construction. Biogeographic studies have shown that the last common ancestor of L. badensis, and the much smaller sister-taxon, the Atlantic-Mediterranean L. friendi, lived less than 10 000 years ago. Allopatric speciation occurred via geographically isolated founder populations that were separated by the river Rhine so that today two earthworm species exist in different areas.

Annelids. A Multimedia CD-ROM. [CD-ROM].

Science.gov (United States)

2001

This CD-ROM is designed for classroom and individual use to teach and learn about annelids. Integrated animations, custom graphics, three-dimensional representations, photographs, and sound are featured for use in user-controlled activities. Interactive lessons are available to reinforce the subject material. Pre- and post-testing sections are…

Earthworms and in vitro physiologically-based extraction tests : complementary tools for a holistic approach towards understanding risk at arsenic-contaminated sites

OpenAIRE

Button, Mark; Watts, Michael J.; Cave, Mark R.; Harrington, Chris F.; Jenkin, Gawen R.T.

2009-01-01

The relationship of the total arsenic content of a soil and its bioaccumulation by earthworms (Lumbricus rubellus and Dendrodrilus rubidus) to the arsenic fraction bioaccessible to humans, measured using an in vitro physiologically-based extraction test (PBET), was investigated. Soil and earthworm samples were collected at 24 sites at the former arsenic mine at the Devon Great Consols (DGC) in southwest England (UK), along with an uncontaminated site in Nottingham, UK, for comparison. Analysi...

Molecular regionalization in the compact brain of the meiofaunal annelid Dinophilus gyrociliatus (Dinophilidae)

DEFF Research Database (Denmark)

Kerbl, Alexandra; Martín-Durán, José M.; Worsaae, Katrine

2016-01-01

-developing annelids are important to attain a general picture of the evolutionary events underlying the vast diversity of annelid neuroanatomy. RESULTS: We have analyzed the expression domains of 11 evolutionarily conserved genes involved in brain and anterior neural patterning in adult females of the direct...

Annelid Distal-less/Dlx duplications reveal varied post-duplication fates

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Korchagina Natalia

2011-08-01

Full Text Available Abstract Background Dlx (Distal-less genes have various developmental roles and are widespread throughout the animal kingdom, usually occurring as single copy genes in non-chordates and as multiple copies in most chordate genomes. While the genomic arrangement and function of these genes is well known in vertebrates and arthropods, information about Dlx genes in other organisms is scarce. We investigate the presence of Dlx genes in several annelid species and examine Dlx gene expression in the polychaete Pomatoceros lamarckii. Results Two Dlx genes are present in P. lamarckii, Capitella teleta and Helobdella robusta. The C. teleta Dlx genes are closely linked in an inverted tail-to-tail orientation, reminiscent of the arrangement of vertebrate Dlx pairs, and gene conversion appears to have had a role in their evolution. The H. robusta Dlx genes, however, are not on the same genomic scaffold and display divergent sequences, while, if the P. lamarckii genes are linked in a tail-to-tail orientation they are a minimum of 41 kilobases apart and show no sign of gene conversion. No expression in P. lamarckii appendage development has been observed, which conflicts with the supposed conserved role of these genes in animal appendage development. These Dlx duplications do not appear to be annelid-wide, as the polychaete Platynereis dumerilii likely possesses only one Dlx gene. Conclusions On the basis of the currently accepted annelid phylogeny, we hypothesise that one Dlx duplication occurred in the annelid lineage after the divergence of P. dumerilii from the other lineages and these duplicates then had varied evolutionary fates in different species. We also propose that the ancestral role of Dlx genes is not related to appendage development.

Molecular regionalization in the compact brain of the meiofaunal annelid Dinophilus gyrociliatus (Dinophilidae

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Alexandra Kerbl

2016-08-01

Full Text Available Abstract Background Annelida is a morphologically diverse animal group that exhibits a remarkable variety in nervous system architecture (e.g., number and location of longitudinal cords, architecture of the brain. Despite this heterogeneity of neural arrangements, the molecular profiles related to central nervous system patterning seem to be conserved even between distantly related annelids. In particular, comparative molecular studies on brain and anterior neural region patterning genes have focused so far mainly on indirect-developing macrofaunal taxa. Therefore, analyses on microscopic, direct-developing annelids are important to attain a general picture of the evolutionary events underlying the vast diversity of annelid neuroanatomy. Results We have analyzed the expression domains of 11 evolutionarily conserved genes involved in brain and anterior neural patterning in adult females of the direct-developing meiofaunal annelid Dinophilus gyrociliatus. The small, compact brain shows expression of dimmed, foxg, goosecoid, homeobrain, nk2.1, orthodenticle, orthopedia, pax6, six3/6 and synaptotagmin-1. Although most of the studied markers localize to specific brain areas, the genes six3/6 and synaptotagmin-1 are expressed in nearly all perikarya of the brain. All genes except for goosecoid, pax6 and nk2.2 overlap in the anterior brain region, while the respective expression domains are more separated in the posterior brain. Conclusions Our findings reveal that the expression patterns of the genes foxg, orthodenticle, orthopedia and six3/6 correlate with those described in Platynereis dumerilii larvae, and homeobrain, nk2.1, orthodenticle and synaptotagmin-1 resemble the pattern of late larvae of Capitella teleta. Although data on other annelids are limited, molecular similarities between adult Dinophilus and larval Platynereis and Capitella suggest an overall conservation of molecular mechanisms patterning the anterior neural regions, independent

Survival, Pb-uptake and behaviour of three species of earthworm in Pb treated soils determined using an OECD-style toxicity test and a soil avoidance test

International Nuclear Information System (INIS)

Langdon, Caroline J.; Hodson, Mark E.; Arnold, Rebecca E.; Black, Stuart

2005-01-01

Mature (clitellate) Eisenia andrei Bouche (ultra epigeic), Lumbricus rubellus Hoffmeister (epigeic), and Aporrectodea caliginosa (Savigny) (endogeic) earthworms were placed in soils treated with Pb(NO 3 ) 2 to have concentrations in the range 1000 to 10 000 mg Pb kg -1 . After 28 days LC50 -95%confidencelimit +95%confidencelimit values were E. andrei5824 -361 +898 mg Pb kg -1 , L. rubellus2867 -193 +145 mg Pb kg -1 and A. caliginosa2747 -304 +239 mg Pb kg -1 and EC50s for weight change were E. andrei2841 -68 +150 mg Pb kg -1 , L. rubellus1303 -201 +240 mg Pb kg -1 and A. caliginosa1208 -206 +212 mg Pb kg -1 . At any given soil Pb concentration, Pb tissue concentrations after 28 days were the same for all three earthworm species. In a soil avoidance test there was no difference between the behaviour of the different species. The lower sensitivity to Pb exhibited by E. andrei is most likely due to physiological adaptations associated with the modes of life of the earthworms, and could have serious implications for the use of this earthworm as the species of choice in standard toxicological testing.

Incorporation of microplastics from litter into burrows of Lumbricus terrestris

NARCIS (Netherlands)

Huerta Lwanga, Esperanza; Gertsen, H.F.; Gooren, H.; Peters, P.; Salanki, T.E.; Ploeg, van der M.; Besseling, E.; Koelmans, A.A.; Geissen, V.

2017-01-01

Pollution caused by plastic debris is an urgent environmental problem. Here, we assessed the effects of microplastics in the soil surface litter on the formation and characterization of burrows built by the anecic earthworm Lumbricus terrestris in soil and quantified the amount of microplastics that

The aquatic annelid fauna of the San Marcos River headsprings, Hays County, Texas

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McLean L.D. Worsham

2016-09-01

Full Text Available The San Marcos River in Central Texas has been well studied and has been demonstrated to be remarkably specious. Prior to the present study, research on free-living invertebrates in the San Marcos River only dealt with hard bodied taxa with the exception of the report of one gastrotrich, and one subterranean platyhelminth that only incidentally occurs in the head spring outflows. The remainder of the soft-bodied metazoan fauna that inhabit the San Marcos River had never been studied. Our study surveyed the annelid fauna and some other soft-bodied invertebrates of the San Marcos River headsprings. At least four species of Hirudinida, two species of Aphanoneura, one species of Branchiobdellida, and 11 (possibly 13 species of oligochaetous clitellates were collected. Other vermiform taxa collected included at least three species of Turbellaria and one species of Nemertea. We provide the results of the first survey of the aquatic annelid fauna of the San Marcos Springs, along with a dichotomous key to these annelids that includes photos of some representative specimens, and line drawings to elucidate potentially confusing diagnostic structures.

The aquatic annelid fauna of the San Marcos River headsprings, Hays County, Texas

Science.gov (United States)

Worsham, McLean L. D.; Gibson, Randy; Huffman, David G.

2016-01-01

Abstract The San Marcos River in Central Texas has been well studied and has been demonstrated to be remarkably specious. Prior to the present study, research on free-living invertebrates in the San Marcos River only dealt with hard bodied taxa with the exception of the report of one gastrotrich, and one subterranean platyhelminth that only incidentally occurs in the head spring outflows. The remainder of the soft-bodied metazoan fauna that inhabit the San Marcos River had never been studied. Our study surveyed the annelid fauna and some other soft-bodied invertebrates of the San Marcos River headsprings. At least four species of Hirudinida, two species of Aphanoneura, one species of Branchiobdellida, and 11 (possibly 13) species of oligochaetous clitellates were collected. Other vermiform taxa collected included at least three species of Turbellaria and one species of Nemertea. We provide the results of the first survey of the aquatic annelid fauna of the San Marcos Springs, along with a dichotomous key to these annelids that includes photos of some representative specimens, and line drawings to elucidate potentially confusing diagnostic structures. PMID:27853397

Evolution and adaptation of marine annelids in interstitial and cave habitats

DEFF Research Database (Denmark)

Martinez Garcia, Alejandro

relatives in cave subterranean ecological refugia. Active colonization and ecological speciation to particular cave niches has been alternatively suggested, but the evaluation of that scenario is obscured by the dominance of crustaceans in anchialine habitats, ecologically similar out and inside caves....... The main goal of this thesis is to explore the evolutionary processes behind colonization and adaptation to submarine cave ecosystems in the Atlantic Ocean using annelids as a model, mainly when they involved ancestrally interstitial forms. In order to do that, we studied selected lineages of annelids...... with cave and interstitial representatives, mainly the families Protodrilidae, Nerillidae, Saccocirridae and Scalibregmatidae. The studies combined the characterization of ancestral and cave habitats, with morphological investigations and phylogenetic analyses founded on extensive taxon coverage...

Dietary flexibility aids Asian earthworm invasion in North American forests.

Science.gov (United States)

Zhang, Weixin; Hendrix, Paul F; Snyder, Bruce A; Molina, Marirosa; Li, Jianxiong; Rao, Xingquan; Siemann, Evan; Fu, Shenglei

2010-07-01

On a local scale, invasiveness of introduced species and invasibility of habitats together determine invasion success. A key issue in invasion ecology has been how to quantify the contribution of species invasiveness and habitat invasibility separately. Conventional approaches, such as comparing the differences in traits and/or impacts of species between native and/or invaded ranges, do not determine the extent to which the performance of invaders is due to either the effects of species traits or habitat characteristics. Here we explore the interaction between two of the most widespread earthworm invaders in the world (Asian Amynthas agrestis and European Lumbricus rubellus) and study the effects of species invasiveness and habitat invasibility separately through an alternative approach of "third habitat" in Tennessee, USA. We propose that feeding behaviors of earthworms will be critical to invasion success because trophic ecology of invasive animals plays a key role in the invasion process. We found that (1) the biomass and isotopic abundances (delta13C and delta15N) of A. agrestis were not impacted by either direct effects of L. rubellus competition or indirect effects of L. rubellus-preconditioned habitat; (2) A. agrestis disrupted the relationship between L. rubellus and soil microorganisms and consequently hindered litter consumption by L. rubellus; and (3) compared to L. rubellus, A. agrestis shifted its diet more readily to consume more litter, more soil gram-positive (G+) bacteria (which may be important for litter digestion), and more non-microbial soil fauna when soil microorganisms were depleted. In conclusion, A. agrestis showed strong invasiveness through its dietary flexibility through diet shifting and superior feeding behavior and its indirectly negative effect of habitat invasibility on L. rubellus via changes in the soil microorganism community. In such context, our results expand on the resource fluctuation hypothesis and support the superior

Microplastics in the terrestrial ecosystem: Implications for Lumbricus terrestris (Oligochaeta, Lumbricidae)

NARCIS (Netherlands)

Huerta Lwanga, Esperanza; Gertsen, H.F.; Gooren, H.; Peters, P.D.; Salanki, T.E.; Ploeg, van der M.J.C.; Besseling, E.; Koelmans, A.A.; Geissen, V.

2016-01-01

Plastic debris is widespread in the environment, but information on the effects of microplastics on terrestrial fauna is completely lacking. Here, we studied the survival and fitness of the earthworm Lumbricus terrestris (Oligochaeta, Lumbricidae) exposed to microplastics (Polyethylene, <150 μm)

Earthworms accumulate alanine in response to drought.

Science.gov (United States)

Holmstrup, Martin; Slotsbo, Stine; Henriksen, Per G; Bayley, Mark

2016-09-01

Earthworms have ecologically significant functions in tropical and temperate ecosystems and it is therefore important to understand how these animals survive during drought. In order to explore the physiological responses to dry conditions, we simulated a natural drought incident in a laboratory trial exposing worms in slowly drying soil for about one month, and then analyzed the whole-body contents of free amino acids (FAAs). We investigated three species forming estivation chambers when soils dry out (Aporrectodea tuberculata, Aporrectodea icterica and Aporrectodea longa) and one species that does not estivate during drought (Lumbricus rubellus). Worms subjected to drought conditions (alanine that was significantly upregulated in all tested species. Alanine was the most important FAA reaching 250-650μmolg(-1) dry weight in dehydrated Aporrectodea species and 300μmolg(-1) dry weight in L. rubellus. Proline was only weakly upregulated in some species as were a few other FAAs. Species forming estivation chambers (Aporrectodea spp.) did not show a better ability to conserve body water than the non-estivating species (L. rubellus) at the same drought level. These results suggest that the accumulation of alanine is an important adaptive trait in drought tolerance of earthworms in general. Copyright © 2016 Elsevier Inc. All rights reserved.

Plasticity and regeneration of gonads in the annelid Pristina leidyi

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B. Duygu Özpolat

2016-10-01

Full Text Available Abstract Background Gonads are specialized gamete-producing structures that, despite their functional importance, are generated by diverse mechanisms across groups of animals and can be among the most plastic organs of the body. Annelids, the segmented worms, are a group in which gonads have been documented to be plastic and to be able to regenerate, but little is known about what factors influence gonad development or how these structures regenerate. In this study, we aimed to identify factors that influence the presence and size of gonads and to investigate gonad regeneration in the small asexually reproducing annelid, Pristina leidyi. Results We found that gonad presence and size in asexual adult P. leidyi are highly variable across individuals and identified several factors that influence these structures. An extrinsic factor, food availability, and two intrinsic factors, individual age and parental age, strongly influence the presence and size of gonads in P. leidyi. We also found that following head amputation in this species, gonads can develop by morphallactic regeneration in previously non-gonadal segments. We also identified a sexually mature individual from our laboratory culture that demonstrates that, although our laboratory strain reproduces only asexually, it retains the potential to become fully sexual. Conclusions Our findings demonstrate that gonads in P. leidyi display high phenotypic plasticity and flexibility with respect to their presence, their size, and the segments in which they can form. Considering our findings along with relevant data from other species, we find that, as a group, clitellate annelids can form gonads in at least four different contexts: post-starvation refeeding, fission, morphallactic regeneration, and epimorphic regeneration. This group is thus particularly useful for investigating the mechanisms involved in gonad formation and the evolution of post-embryonic phenotypic plasticity.

Neuromuscular Structure, Evolution and Development in Meiofaunal Annelids with Special Focus on Dinophilus gyrociliatus (Dinophilidae)

DEFF Research Database (Denmark)

Kerbl, Alexandra

less complex sensory structures. Yet, very little is still known on how these small brains are organized to fulfil basic functions. This study addresses the structure, evolution and development of neuromuscular systems within two exclusively meiofaunal lineages Lobatocerebridae and Dinophilidae....... RESULTS: Both families were shown to be nested within annelids in phylogenomic analyses based on transcriptomic data, which also suggest the Spiralian ancestor to be meiofaunal (Manuscript 4). The annelid affinity of the enigmatic Lobatocerebridae was further tested by detailed morphological examinations...... warranting further studies to uncover how the genetic domains influence the configuration of the brain...

Earthworm responses to Cd and Cu under fluctuating environmental conditions: a comparison with results from laboratory exposures

International Nuclear Information System (INIS)

Spurgeon, David J.; Svendsen, Claus; Lister, Lindsay J.; Hankard, Peter K.; Kille, Peter

2005-01-01

Laboratory toxicity tests are usually conducted under stable ambient conditions, while exposures in ecosystems occur in a fluctuating climate. To assess how climate influences the toxicity of Cu and Cd for the earthworm Lumbricus rubellus, this study compared effects for life-cycle parameters (survival, reproduction), cellular status (lysosomal membrane stability), gene expression (transcript of the metal binding protein metallothionein-2) and tissue metal concentration measured under outdoor conditions, with the same responses under constant conditions as measured by Spurgeon et al. [Spurgeon, D.J., Svendsen, C., Weeks, J.M., Hankard, P.K., Stubberud, H.E., Kammenga, J.E., 2003. Quantifying copper and cadmium impacts on intrinsic rate of population increase in the terrestrial oligochaete Lumbricus rubellus. Environmental Toxicology and Chemistry 22, 1465-1472]. Both metals were found to significantly influence earthworm reproduction, compromise lysosomal membrane stability and induce MT-2 gene expression in the outdoor system. Comparison with physiological and life-cycle responses in the laboratory indicated similar response patterns and effect concentrations for Cu. For Cd, lysosomal membrane stability and MT-2expression showed comparable responses in both exposures. Juvenile production rate, however, gave different dose response relationships, with the EC- 50 in the outdoor test approximately half that in the laboratory test. A difference in Cd accumulation was also seen. Overall, however, the comparison indicated only a marginal effect of environmental fluctuations typical for northern temperate Europe on earthworm sensitivity to the two metals. - Comparative analysis of life-cycle, physiological and molecular responses to Cu and Cd indicate similar responses under static and fluctuating climate regimes

Organoleptic, physical, and chemical tests of artificial feed for milk fish substituted by earthworm meal (Lumbricus sp.

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Siti Aslamyah

2013-11-01

Full Text Available Earthworms meal (Lumbricus sp. is very prospective as milkfish feed raw materials to substitute fish meal. Type of raw material and the exact composition will generate artificial feed quality with high levels of water stability, desirable, and safe for the fish. The purpose of this study to evaluate the quality of milkfish feed at different levels of fish meal substitution with earthworms (Lumbricus sp. based on organoleptic, physical, and chemical tests. The treatments tested levels of substitution of fish meal with earthworms meal in artificial feed milkfish, namely: feed A (0%; feed B (34,62%; feed C (65,38% and feed D (100%. The organoleptic and physical test showed that all the feed has a smooth texture, pungent aroma, and brown in color, with good water stability (rupture velocity ranged from 91,25±1,47 up to 92,87±1,67 minutes and dispersion of solids 11,14±1,55 up to 11,87±1,3%, hardness 84±0,18 up to 84,71±1,24%, sinking velocity 5,07±0,68 up to 5,64±0,17 cm/sec, the level of homogeneity of 81,34±0,17 up to 85,68±1,85%, the allure of 0,62±0,58 up to 0,65±0,12 cm/sec and delicious power of 0,059±0,024 up to 0,067±0,032 g/fish weight/day. The quality of feed is chemically with moisture content ranging from 8,4–9,1%, 16,7–19,46% ash, 31,07–32,37%, protein, 6,67–7,58% fat, crude fiber 7,45–7,87%, NFE (nitrogen free extracts 35,35–35,48%. Results show that different levels of substitution of fish meal with earthworms meal (Lumbricus sp. produces the same feed quality and contains nutrients in a range requirement milkfish. Accordingly, earthworms meal (Lumbricus sp. can be substituted for fish meal in fish milk feed artificial up to 100%.Keywords: substitution, fish meal, earthworms meal (Lumbricus sp., artificial feed, milkfish

Effectivity of the Earthworms Pheretima hupiensis, Eudrellus sp. and Lumbricus sp. on the Organic Matter Decomposition Process

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Ea Kosman Anwar

2009-05-01

Full Text Available The earthworms are the one of soil fauna component in soil ecosystem have an important role in organic matter decomposition procces. The earthworm feed plant leaf and plant matter up to apart and dissolved. Earthworm metabolisms produce like faeces that mixed with decomposed organic matter mean vermicompost. The vermicompost fertility varies because of some kind of earthworm differ in “niche” and attitude. The experiment was to study the effectivity of earthworm on organic matter decomposition which has been conducted in Soil Biological and Healthy Laboratory and Green House of Soil Research Institute Bogor, during 2006 Budget Year. The three kind of earthworms i.e Pheretima hupiensis, Lumbricus sp. and Eudrellus sp. combined with three kind of organic matter sources i.e rice straw, trash and palm oil plant waste (compost heap. The result shows that the Lumbricus sp. are the most effective decomposer compared to Pheretima hupiensis and Eudrellus sp. and the organic matter decomposed by Lumbricus sp. as followed: market waste was decomposed of 100%, palm oil empty fruit bunch (compost heap 95.8 % and rice straw 84.9%, respectively. Earthworm effectively decreased Fe, Al, Mn, Cu dan Zn.

The effect of earthworms on the fractionation and bioavailability of heavy metals before and after soil remediation

International Nuclear Information System (INIS)

Udovic, Metka; Lestan, Domen

2007-01-01

The effect of two earthworm species, Lumbricus rubellus and Eisenia fetida, on the fractionation/bioavailability of Pb and Zn before and after soil leaching with EDTA was studied. Four leaching steps with total 12.5 mmol kg -1 EDTA removed 39.8% and 6.1% of Pb and Zn, respectively. EDTA removed Pb from all soil fractions fairly uniformly (assessed using sequential extractions). Zn was mostly present in the chemically inert residual soil fraction, which explains its poor removal. Analysis of earthworm casts and the remainder of the soil indicated that L. rubellus and E. fetida actively regulated soil pH, but did not significantly change Pb and Zn fractionation in non-remediated and remediated soil. However, the bioavailability of Pb (assessed using Ruby's physiologically based extraction test) in E. fetida casts was significantly higher than in the bulk of the soil. In remediated soil the Pb bioavailability in the simulated stomach phase increased by 5.1 times. - Earthworm activity increases heavy metal bioavailability in soil before and after remediation

The effect of earthworms on the fractionation and bioavailability of heavy metals before and after soil remediation

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Udovic, Metka [Agronomy Department, Centre for Soil and Environmental Science, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana (Slovenia); Lestan, Domen [Agronomy Department, Centre for Soil and Environmental Science, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana (Slovenia)]. E-mail: domen.lestan@bf.uni-lj.si

2007-07-15

The effect of two earthworm species, Lumbricus rubellus and Eisenia fetida, on the fractionation/bioavailability of Pb and Zn before and after soil leaching with EDTA was studied. Four leaching steps with total 12.5 mmol kg{sup -1} EDTA removed 39.8% and 6.1% of Pb and Zn, respectively. EDTA removed Pb from all soil fractions fairly uniformly (assessed using sequential extractions). Zn was mostly present in the chemically inert residual soil fraction, which explains its poor removal. Analysis of earthworm casts and the remainder of the soil indicated that L. rubellus and E. fetida actively regulated soil pH, but did not significantly change Pb and Zn fractionation in non-remediated and remediated soil. However, the bioavailability of Pb (assessed using Ruby's physiologically based extraction test) in E. fetida casts was significantly higher than in the bulk of the soil. In remediated soil the Pb bioavailability in the simulated stomach phase increased by 5.1 times. - Earthworm activity increases heavy metal bioavailability in soil before and after remediation.

Earthworms and in vitro physiologically-based extraction tests: complementary tools for a holistic approach towards understanding risk at arsenic-contaminated sites.

Science.gov (United States)

Button, Mark; Watts, Michael J; Cave, Mark R; Harrington, Chris F; Jenkin, Gawen T

2009-04-01

The relationship of the total arsenic content of a soil and its bioaccumulation by earthworms (Lumbricus rubellus and Dendrodrilus rubidus) to the arsenic fraction bioaccessible to humans, measured using an in vitro physiologically-based extraction test (PBET), was investigated. Soil and earthworm samples were collected at 24 sites at the former arsenic mine at the Devon Great Consols (DGC) in southwest England (UK), along with an uncontaminated site in Nottingham, UK, for comparison. Analysis of soil and earthworm total arsenic via inductively coupled plasma mass spectrometry (ICP-MS) was performed following a mixed acid digestion. Arsenic concentrations in the soil were elevated (204-9,025 mg kg(-1)) at DGC. The arsenic bioaccumulation factor (BAF) for both earthworm species was found to correlate positively with the human bioaccessible fraction (HBF), although the correlation was only significant (P earthworms as complementary tools is explored as a holistic and multidisciplinary approach towards understanding risk at contaminated sites. Arsenic resistant earthworm species such as the L. rubellus populations at DGC are presented as a valuable tool for understanding risk at highly contaminated sites.

Detailed reconstruction of the nervous and muscular system of Lobatocerebridae with an evaluation of its annelid affinity.

Science.gov (United States)

Kerbl, Alexandra; Bekkouche, Nicolas; Sterrer, Wolfgang; Worsaae, Katrine

2015-12-10

The microscopic worm group Lobatocerebridae has been regarded a 'problematicum', with the systematic relationship being highly debated until a recent phylogenomic study placed them within annelids (Curr Biol 25: 2000-2006, 2015). To date, a morphological comparison with other spiralian taxa lacks detailed information on the nervous and muscular system, which is here presented for Lobatocerebrum riegeri n. sp. based on immunohistochemistry and confocal laser scanning microscopy, supported by TEM and live observations. The musculature is organized as a grid of longitudinal muscles and transverse muscular ring complexes in the trunk. The rostrum is supplied by longitudinal muscles and only a few transverse muscles. The intraepidermal central nervous system consists of a big, multi-lobed brain, nine major nerve bundles extending anteriorly into the rostrum and two lateral and one median cord extending posteriorly to the anus, connected by five commissures. The glandular epidermis has at least three types of mucus secreting glands and one type of adhesive unicellular glands. No exclusive "annelid characters" could be found in the neuromuscular system of Lobatocerebridae, except for perhaps the mid-ventral nerve. However, none of the observed structures disputes its position within this group. The neuromuscular and glandular system of L. riegeri n. sp. shows similarities to those of meiofaunal annelids such as Dinophilidae and Protodrilidae, yet likewise to Gnathostomulida and catenulid Platyhelminthes, all living in the restrictive interstitial environment among sand grains. It therefore suggests an extreme evolutionary plasticity of annelid nervous and muscular architecture, previously regarded as highly conservative organ systems throughout metazoan evolution.

Lumbricus terrestris L. activity increases the availability of metals and their accumulation in maize and barley

International Nuclear Information System (INIS)

Ruiz, E.; Alonso-Azcarate, J.; Rodriguez, L.

2011-01-01

The effect of the earthworm Lumbricus terrestris L. on metal availability in two mining soils was assessed by means of chemical extraction methods and a pot experiment using crop plants. Results from single and sequential extractions showed that L. terrestris had a slight effect on metal fractionation in the studied soils: only metals bound to the soil organic matter were significantly increased in some cases. However, we found that L. terrestris significantly increased root, shoot and total Pb and Zn concentrations in maize and barley for the soil with the highest concentrations of total and available metals. Specifically, shoot Pb concentration was increased by a factor of 7.5 and 3.9 for maize and barley, respectively, while shoot Zn concentration was increased by a factor of 3.7 and 1.7 for maize and barley, respectively. Our results demonstrated that earthworm activity increases the bioavailability of metals in soils. - Research highlights: → Lumbricus terrestris L. activity increases the bioavailability of metals in soils. → Earthworm activity can significantly increase total, shoot and root metal concentrations for crop plants. → Both bioassays and chemical extraction methods are necessary for assessing the bioavailability of metals in contaminated soils. - Lumbricus terrestris L. activity increases the bioavailability of metals in soils and total, shoot and root metal concentrations for maize and barley.

Lumbricus terrestris L. activity increases the availability of metals and their accumulation in maize and barley

Energy Technology Data Exchange (ETDEWEB)

Ruiz, E. [Department of Chemical Engineering, School of Civil Engineering, University of Castilla-La Mancha, Avenida Camilo Jose Cela, s/n, 13071 Ciudad Real (Spain); Alonso-Azcarate, J. [Department of Physical Chemistry, Faculty of Environmental Sciences, University of Castilla-La Mancha, Avenida Carlos III, s/n, 45071 Toledo (Spain); Rodriguez, L., E-mail: Luis.Rromero@uclm.es [Department of Chemical Engineering, School of Civil Engineering, University of Castilla-La Mancha, Avenida Camilo Jose Cela, s/n, 13071 Ciudad Real (Spain)

2011-03-15

The effect of the earthworm Lumbricus terrestris L. on metal availability in two mining soils was assessed by means of chemical extraction methods and a pot experiment using crop plants. Results from single and sequential extractions showed that L. terrestris had a slight effect on metal fractionation in the studied soils: only metals bound to the soil organic matter were significantly increased in some cases. However, we found that L. terrestris significantly increased root, shoot and total Pb and Zn concentrations in maize and barley for the soil with the highest concentrations of total and available metals. Specifically, shoot Pb concentration was increased by a factor of 7.5 and 3.9 for maize and barley, respectively, while shoot Zn concentration was increased by a factor of 3.7 and 1.7 for maize and barley, respectively. Our results demonstrated that earthworm activity increases the bioavailability of metals in soils. - Research highlights: > Lumbricus terrestris L. activity increases the bioavailability of metals in soils. > Earthworm activity can significantly increase total, shoot and root metal concentrations for crop plants. > Both bioassays and chemical extraction methods are necessary for assessing the bioavailability of metals in contaminated soils. - Lumbricus terrestris L. activity increases the bioavailability of metals in soils and total, shoot and root metal concentrations for maize and barley.

Structural Characterization of Silica Particles Extracted from Grass Stenotaphrum secundatum: Biotransformation via Annelids

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A. Espíndola-Gonzalez

2014-01-01

Full Text Available This study shows the structural characterization of silica particles extracted from Stenotaphrum secundatum (St. Augustine grass using an annelid-based biotransformation process. This bioprocess starts when St. Augustine grass is turned into humus by vermicompost, and then goes through calcination and acid treatment to obtain silica particles. To determine the effect of the bioprocess, silica particles without biotransformation were extracted directly from the sample of grass. The characterization of the silica particles was performed using Infrared (FTIR and Raman spectroscopy, Transmission Electron Microscopy (TEM, X-ray Diffraction (XRD, Dynamic Light Scattering (DLS, and Energy Dispersion Spectroscopy (EDS. Both types of particles showed differences in morphology and size. The particles without biotransformation were essentially amorphous while those obtained via annelids showed specific crystalline phases. The biological relationship between the metabolisms of worms and microorganisms and the organic-mineral matter causes changes to the particles' properties. The results of this study are important because they will allow synthesis of silica in cheaper and more ecofriendly ways.

Roles of epi-anecic taxa of earthworms in the organic matter recycling

Science.gov (United States)

Hoeffner, Kevin; Monard, Cécile; Santonja, Mathieu; Pérès, Guénola; Cluzeau, Daniel

2017-04-01

Given their impact on soil functioning and their interactions with soil organisms, earthworms contribute to the recycling of organic matter and participate significantly in the numerous ecosystem services provided by soils. Most studies on the role of earthworms in organic matter recycling were conducted at the level of the four functional groups (epigeic, epi-anecic, anecic strict and endogeic), but their effects at taxa level remain largely unknown. Still, within a functional group, anatomic and physiologic earthworm taxa traits are different, which should impact organic matter recycling. This study aims at determining, under controlled conditions, epi-anecic taxa differences in (i) leaf litter mass loss, (ii) assimilation and (iii) impact on microorganisms communities implied in organic matter degradation. In seperate microcosms, we chose 4 epi anecic taxa (Lumbricus rubellus, Lumbricus festivus, Lumbricus centralis and Lumbricus terrestris). Each taxon was exposed separately to leaves of three different plants (Holcus lanatus, Lolium perenne and Corylus avellana). In the same microcosm, leaves of each plant was both placed on the surface and buried 10cm deep. The experiment lasted 10 days for half of the samples and 20 days for the second half. Microorganisms communities were analysed using TRFLP in each earthworm taxon burrow walls at 20 days. We observed differences between epi-anecic taxa depending on species of plant and the duration of the experiment. Results are discussed taking into account physical and chemical properties of these 3 trophic resources (e.g. C/N ratio, phenolic compounds, percentage of lignin and cellulose...).

MORPHOMETRIC PARAMETERS AND MICRORELIEF OF THE LUMBRICUS CELOMOCYTES IN THE CONDITIONS OF THE OSMOTIC PRESSURE

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Andrey Andreevich Prisnyi

2017-10-01

Full Text Available Background: Study the morphometric parameters and microrelief of the coelomocytes membrane of the Lumbricus representatives in normal and under osmotic pressure. Materials and methods: In the experiments, representatives of three species belonging to the genus Lumbricus were used. To conduct each series of experiments a coelomic liquid of 15 representatives of each species was used. From the circulation system of each individual examined, at least 250 cells were processed. The study of morphometric parameters of coelomocytes was carried out in isotonic conditions, and also with the use of osmotic tests in vitro. The features of the surface topography of coelomocytes were study using the “Integra Vita Probe Nanaboratorium” (NT-MDT, Russia. The analysis of amplitude and functional average statistical parameters of membrane roughness is carried out. The results of the research were processed using statistics methods using the Microsoft Excel 7.0 analysis package. Results: The Lumbricus representatives of revealed differences in the responses of amoebocytes and eleocytes to the effect of osmotic stress. Under the conditions of osmotic pressure, several morphologically different forms were found among the cells of each type. This indicates the potential ability of coelomocytes to spread out on the substrate for any type of osmotic pressure. The change in the topography of the cell membrane of coelomocytes under the hypoosmotic pressure is characterized by a smoothing of the microrelief structures with a decrease in the size of the microvysings and microinvaginations. Conclusion: The microrelief of the coelomocytes membrane reflects the features of their functional status changing under the influence of environmental factors.

What role do annelid neoblasts play? A comparison of the regeneration patterns in a neoblast-bearing and a neoblast-lacking enchytraeid oligochaete.

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Maroko Myohara

Full Text Available The term 'neoblast' was originally coined for a particular type of cell that had been observed during annelid regeneration, but is now used to describe the pluripotent/totipotent stem cells that are indispensable for planarian regeneration. Despite having the same name, however, planarian and annelid neoblasts are morphologically and functionally distinct, and many annelid species that lack neoblasts can nonetheless substantially regenerate. To further elucidate the functions of the annelid neoblasts, a comparison was made between the regeneration patterns of two enchytraeid oligochaetes, Enchytraeus japonensis and Enchytraeus buchholzi, which possess and lack neoblasts, respectively. In E. japonensis, which can reproduce asexually by fragmentation and subsequent regeneration, neoblasts are present in all segments except for the eight anterior-most segments including the seven head-specific segments, and all body fragments containing neoblasts can regenerate a complete head and a complete tail, irrespective of the region of the body from which they were originally derived. In E. japonensis, therefore, no antero-posterior gradient of regeneration ability exists in the trunk region. However, when amputation was carried out within the head region, where neoblasts are absent, the number of regenerated segments was found to be dependent on the level of amputation along the body axis. In E. buchholzi, which reproduces only sexually and lacks neoblasts in all segments, complete heads were never regenerated and incomplete (hypomeric heads could be regenerated only from the anterior region of the body. Such an antero-posterior gradient of regeneration ability was observed for both the anterior and posterior regeneration in the whole body of E. buchholzi. These results indicate that the presence of neoblasts correlates with the absence of an antero-posterior gradient of regeneration ability along the body axis, and suggest that the annelid neoblasts are

Mesonerilla neridae, n. sp. (Nerillidae): First meiofaunal annelid from deep-sea hydrothermal vents

DEFF Research Database (Denmark)

Worsaae, Katrine; Rouse, Greg W

2009-01-01

Though most common in coastal sandy bottoms, nerillid annelids have been found in a broad variety of habitats around the world and two genera have previously been reported from the deep sea. During a cruise to the southern East Pacific Rise and northern Pacific Antarctic Ridge (near Easter Island...

Evidence for involvement of gut-associated denitrifying bacteria in emission of nitrous oxide (N(2)O) by earthworms obtained from garden and forest soils.

Science.gov (United States)

Matthies, C; Griesshammer, A; Schmittroth, M; Drake, H L

1999-08-01

Earthworms (Aporrectodea caliginosa, Lumbricus rubellus, and Octolasion lacteum) obtained from nitrous oxide (N(2)O)-emitting garden soils emitted 0.14 to 0.87 nmol of N(2)O h(-1) g (fresh weight)(-1) under in vivo conditions. L. rubellus obtained from N(2)O-emitting forest soil also emitted N(2)O, which confirmed previous observations (G. R. Karsten and H. L. Drake, Appl. Environ. Microbiol. 63:1878-1882, 1997). In contrast, commercially obtained Lumbricus terrestris did not emit N(2)O; however, such worms emitted N(2)O when they were fed (i.e., preincubated in) garden soils. A. caliginosa, L. rubellus, and O. lacteum substantially increased the rates of N(2)O emission of garden soil columns and microcosms. Extrapolation of the data to in situ conditions indicated that N(2)O emission by earthworms accounted for approximately 33% of the N(2)O emitted by garden soils. In vivo emission of N(2)O by earthworms obtained from both garden and forest soils was greatly stimulated when worms were moistened with sterile solutions of nitrate or nitrite; in contrast, ammonium did not stimulate in vivo emission of N(2)O. In the presence of nitrate, acetylene increased the N(2)O emission rates of earthworms; in contrast, in the presence of nitrite, acetylene had little or no effect on emission of N(2)O. In vivo emission of N(2)O decreased by 80% when earthworms were preincubated in soil supplemented with streptomycin and tetracycline. On a fresh weight basis, the rates of N(2)O emission of dissected earthworm gut sections were substantially higher than the rates of N(2)O emission of dissected worms lacking gut sections, indicating that N(2)O production occurred in the gut rather than on the worm surface. In contrast to living earthworms and gut sections that produced N(2)O under oxic conditions (i.e., in the presence of air), fresh casts (feces) from N(2)O-emitting earthworms produced N(2)O only under anoxic conditions. Collectively, these results indicate that gut

Microplastics in the Terrestrial Ecosystem: Implications for Lumbricus terrestris (Oligochaeta, Lumbricidae).

Science.gov (United States)

Huerta Lwanga, Esperanza; Gertsen, Hennie; Gooren, Harm; Peters, Piet; Salánki, Tamás; van der Ploeg, Martine; Besseling, Ellen; Koelmans, Albert A; Geissen, Violette

2016-03-01

Plastic debris is widespread in the environment, but information on the effects of microplastics on terrestrial fauna is completely lacking. Here, we studied the survival and fitness of the earthworm Lumbricus terrestris (Oligochaeta, Lumbricidae) exposed to microplastics (Polyethylene, digestion of ingested organic matter, microplastic was concentrated in cast, especially at the lowest dose (i.e., 7% in litter) because that dose had the highest proportion of digestible organic matter. Whereas 50 percent of the microplastics had a size of earthworms. These concentration-transport and size-selection mechanisms may have important implications for fate and risk of microplastic in terrestrial ecosystems.

[Influence of the earthworm Lumbricus terrestris on soil solution complexation capacity].

Science.gov (United States)

el Gharmali, A; Rada, A; el Meray, M; Nejmeddine, A

2001-04-01

Four soil samples highly contaminated with metals of urban and mine origin (SE1, SE2, SM1, SM2) and having different physico-chemical proprieties were selected to study copper complexation capacity (LT) of soil solution. The effect of Lumbricus terrestris on copper complexation capacity of soil solution was investigated on SE1 and SE2. The complexation capacity was estimated by amperometric titration of soil solution by copper. Free hydrated cation and labile complexes of copper were determined by DPASV. The results show that the copper complexation capacity variation depends on the physico-chemical characteristics of soils, particularly pH. Thus, the values of copper complexation capacity are 0; 0.6 x 10(-7); 1.8 x 10(-7) and 5.5 x 10(-7) mol l-1 respectively for SM2; SM1; SE1 and SE2 which are pH 5; 5.4; 6.5 and 7.4. Based on these results, the bioavailability levels of heavy metals show the following pool ranking: SM2 > SM1 > SE1 > SE2. The copper complexation capacity of soil solution increases with the soil disturbance by Lumbricus terrestris. This is more obvious when the time of disturbance by lumbrics is longer. Indeed, average values determined for 1 month and 3 months are 3.8 x 10(-7) and 7.8 x 10(-7) mol l-1 for SE1; 7.7 x 10(-7) and 15.2 x 10(-7) mol l-1 for SE2 respectively. It seems that the action of earthworm on soil can contribute to the decrease of bioavailability of heavy metals, particularly copper.

Development of the annelid axochord: insights into notochord evolution.

Science.gov (United States)

Lauri, Antonella; Brunet, Thibaut; Handberg-Thorsager, Mette; Fischer, Antje H L; Simakov, Oleg; Steinmetz, Patrick R H; Tomer, Raju; Keller, Philipp J; Arendt, Detlev

2014-09-12

The origin of chordates has been debated for more than a century, with one key issue being the emergence of the notochord. In vertebrates, the notochord develops by convergence and extension of the chordamesoderm, a population of midline cells of unique molecular identity. We identify a population of mesodermal cells in a developing invertebrate, the marine annelid Platynereis dumerilii, that converges and extends toward the midline and expresses a notochord-specific combination of genes. These cells differentiate into a longitudinal muscle, the axochord, that is positioned between central nervous system and axial blood vessel and secretes a strong collagenous extracellular matrix. Ancestral state reconstruction suggests that contractile mesodermal midline cells existed in bilaterian ancestors. We propose that these cells, via vacuolization and stiffening, gave rise to the chordate notochord. Copyright © 2014, American Association for the Advancement of Science.

The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca

Energy Technology Data Exchange (ETDEWEB)

Boore, Jeffrey L.; Staton, Joseph

2001-09-01

We have determined the sequence of about half (7470 nts) of the mitochondrial genome of the sipunculid Phascolopsis gouldii, the first representative of this phylum to be so studied. All of the 19 identified genes are transcribed from the same DNA strand. The arrangement of these genes is remarkably similar to that of the oligochaete annelid Lumbricus terrestris. Comparison of both the inferred amino acid sequences and the gene arrangements of a variety of diverse metazoan taxa reveals that the phylum Sipuncula is more closely related to Annelida than to Mollusca. This requires reinterpretation of the homology of several embryological features and of patterns of animal body plan evolution.

Collagenous and other organizations in mature annelid cuticle and epidermis.

Science.gov (United States)

Humphreys, S; Porter, K R

1976-05-01

The mature annelid cuticle contains orthogonally oriented collagen in a matrix capped superficially by a dense epicuticle with external corpuscles. The underlying epidermis is a simple columnar epithelium with two major cell types, mucous-secreting cells which secrete through channels in the cuticle to the exterior of the worm, and "supportive" cells which presumably produce and increase the cuticle by secreting into it. The structures of supportive cells, previously interpreted as specialized for establishing interfibrillar collagen order, are revealed by glutaraldehyde fixation as common cellular components without the qualities deemed useful to align collagen. Cell processes which penetrate and sometimes pass completely through the cuticle are not stable, not in geometric order, and lack cilia-like structure. Cilia, unlike the ubiquitous cellular processes, are highly restricted to regions of the epidermis with specialized functions. Cellular control, or other control, of collagen fibrillogenesis remains unestablished.

Molecular phylogenetic analysis of fleshy pored mushrooms: Neoboletus luridiformis and Hortiboletus rubellus from western Himalayan range of Pakistan

International Nuclear Information System (INIS)

Sarwar, S.; Khalid, N.; Dentinger, B.M.

2016-01-01

Fleshy pored mushrooms is the name given to boletes due to their porous hymenium and fleshy nature. These are ectomycorrhizal basidiomycetes found in all continents except Antarctica. These mushrooms are important economically due to their edibility and medicinal value. This research work highlights the diversity of boletes in Pakistan and their correct identification by using molecular phylogenetic techniques. Western Himalayan range (WHR) of Pakistan is considered as diversity rich area. During present investigation regarding diversity of boletes in these areas, two bolete taxa viz. Hortiboletus rubellus and Neoboletus luridiformis were found under conifers. These mushrooms were collected and analyzed morphologically as well as phylogenetically by using Internal Transcribed Spacer (ITS) region of nrDNA sequences, and compared with their allies. All description and comparison with related taxa is provided in detail. These boletes are first time analyzed using molecular method from Pakistan. (author)

Effects of tree leaf litter, deer fecal pellets, and soil properties on growth of an introduced earthworm (Lumbricus terrestris): Implications for invasion dynamics

Science.gov (United States)

Kassidy N. Yatso; Erik A. Lilleskov

2016-01-01

Invasive earthworm communities are expanding into previously earthworm-free forests of North America, producing profound ecosystem changes. Lumbricus terrestris is an invasive anecic earthworm that consumes a large portion of the detritus on the soil surface, eliminating forest floor organic horizons and reducing soil organic matter. Two mesocosm...

The impact of paralogy on phylogenomic studies - a case study on annelid relationships.

Directory of Open Access Journals (Sweden)

Torsten H Struck

Full Text Available Phylogenomic studies based on hundreds of genes derived from expressed sequence tags libraries are increasingly used to reveal the phylogeny of taxa. A prerequisite for these studies is the assignment of genes into clusters of orthologous sequences. Sophisticated methods of orthology prediction are used in such analyses, but it is rarely assessed whether paralogous sequences have been erroneously grouped together as orthologous sequences after the prediction, and whether this had an impact on the phylogenetic reconstruction using a super-matrix approach. Herein, I tested the impact of paralogous sequences on the reconstruction of annelid relationships based on phylogenomic datasets. Using single-partition analyses, screening for bootstrap support, blast searches and pruning of sequences in the supermatrix, wrongly assigned paralogous sequences were found in eight partitions and the placement of five taxa (the annelids Owenia, Scoloplos, Sthenelais and Eurythoe and the nemertean Cerebratulus including the robust bootstrap support could be attributed to the presence of paralogous sequences in two partitions. Excluding these sequences resulted in a different, weaker supported placement for these taxa. Moreover, the analyses revealed that paralogous sequences impacted the reconstruction when only a single taxon represented a previously supported higher taxon such as a polychaete family. One possibility of a priori detection of wrongly assigned paralogous sequences could combine 1 a screening of single-partition analyses based on criteria such as nodal support or internal branch length with 2 blast searches of suspicious cases as presented herein. Also possible are a posteriori approaches in which support for specific clades is investigated by comparing alternative hypotheses based on differences in per-site likelihoods. Increasing the sizes of EST libraries will also decrease the likelihood of wrongly assigned paralogous sequences, and in the case

Evolutionary Origin of Body Axis Segmentation in Annelids and Arthropods

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Shankland, S. Martin

2003-01-01

During the period of this report, we have made a number of important discoveries. To date this work has led to 4 peer-reviewed publications in primary research journals plus 1 minireview and 1 chapter in the proceedings of a meeting. Publications resulting from this grant support are enumerated at the end of the report. Two additional, on-going studies also described. 1. Using laser cell ablation, we have obtained evidence that an annelid - the leech Helobdella robusta - patterns the anteroposterior (AP) polarity of its nascent segment primordia independent of cell interactions oriented along the AP axis. 2. We cloned a Helobdella homologue (hro-hh) of the Drosophila segment polarity gene hedgehog, and used in situ hybridization and northern blots to characterize its expression in the embryo. 3. We have used laser cell ablations to examine the possible role of cell interactions during the developmental patterning of the 4 rostralmost "head" segments of the leech Helobdella robusta.

Biological Effects of a Carbohydrate-Binding Protein from an Annelid, Perinereis nuntia Against Human and Phytopathogenic Microorganisms

OpenAIRE

Sarkar M. A. Kawsar; Sarkar M. A. Mamun; Md S. Rahman; Hidetaro Yasumitsu; Yasuhiro Ozeki

2010-01-01

Lectins have a good scope in current clinical microbiology research. In the present study evaluated the antimicrobial activities of a D-galactose binding lectin (PnL) was purified from the annelid, Perinereis nuntia (polychaeta) by affinity chromatography. The molecular mass of the lectin was determined to be 32 kDa as a single polypeptide by SDS-PAGE under both reducing and non-reducing conditions. The hemagglutinating activity of the PnL showed against trypsinized and g...

Waste recycling: utilization of coffee grounds and kitchen waste in vermicomposting.

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Adi, A J; Noor, Z M

2009-01-01

Vermicomposting using Lumbricus rubellus for 49 days was conducted after 21 days of pre-composting. Three different combination of treatments were prepared with eight replicates for each treatment namely cow dung: kitchen waste in 30:70 ratio (T(1)), cow dung: coffee grounds in 30:70 ratio (T(2)), and cow dung: kitchen waste: coffee grounds in 30:35:35 ratio (T(3)). The multiplication of earthworms in terms of numbers and weight were measured at the end of vermicomposting. Consequently, only T(2) showed significant increase (from it initial stage) compared to other treatments. The presence of coffee grounds in T(2) and T(3) showed higher percentage of nutrient elements in vermicompost produced. The data reveal that coffee grounds can be decomposed through vermicomposting and help to enhance the quality of vermicompost produced rather than sole use of kitchen waste in vermicomposting.

Metal accumulation in earthworms inhabiting floodplain soils

International Nuclear Information System (INIS)

Vijver, Martina G.; Vink, Jos P.M.; Miermans, Cornelis J.H.; Gestel, Cornelis A.M. van

2007-01-01

The main factors contributing to variation in metal concentrations in earthworms inhabiting floodplain soils were investigated in three floodplains differing in inundation frequency and vegetation type. Metal concentrations in epigeic earthworms showed larger seasonal variations than endogeic earthworms. Variation in internal levels between sampling intervals were largest in earthworms from floodplain sites frequently inundated. High and low frequency flooding did not result in consistent changes in internal metal concentrations. Vegetation types of the floodplains did not affect metal levels in Lumbricus rubellus, except for internal Cd levels, which were positively related to the presence of organic litter. Internal levels of most essential metals were higher in spring. In general, no clear patterns in metal uptake were found and repetition of the sampling campaign will probably yield different results. - Metal levels in earthworms show large variation among sites, among seasons and among epigeic and endogeic species

Orthonectids Are Highly Degenerate Annelid Worms.

Science.gov (United States)

Schiffer, Philipp H; Robertson, Helen E; Telford, Maximilian J

2018-05-24

The animal groups of Orthonectida and Dicyemida are tiny, extremely simple, vermiform endoparasites of various marine animals and have been linked in the Mesozoa (Figure 1). The Orthonectida (Figures 1A and 1B) have a few hundred cells, including a nervous system of just ten cells [2], and the Dicyemida (Figure 1C) are even simpler, with ∼40 cells [3]. They are classic "Problematica" [4]-the name Mesozoa suggests an evolutionary position intermediate between Protozoa and Metazoa (animals) [5] and implies that their simplicity is a primitive state, but molecular data have shown they are members of Lophotrochozoa within Bilateria [6-9], which means that they derive from a more complex ancestor. Their precise affinities remain uncertain, however, and it is disputed whether they even constitute a clade. Ascertaining their affinities is complicated by the very fast evolution observed in their genes, potentially leading to the common systematic error of long-branch attraction (LBA) [10]. Here, we use mitochondrial and nuclear gene sequence data and show that both dicyemids and orthonectids are members of the Lophotrochozoa. Carefully addressing the effects of unequal rates of evolution, we show that the Mesozoa is polyphyletic. While the precise position of dicyemids remains unresolved within Lophotrochozoa, we identify orthonectids as members of the phylum Annelida. This result reveals one of the most extreme cases of body-plan simplification in the animal kingdom; our finding makes sense of an annelid-like cuticle in orthonectids [2] and suggests that the circular muscle cells repeated along their body [11] may be segmental in origin. Copyright © 2018 Elsevier Ltd. All rights reserved.

Impact of the earthworm Lumbricus terrestris (L.) on As, Cu, Pb and Zn mobility and speciation in contaminated soils

International Nuclear Information System (INIS)

Sizmur, Tom; Palumbo-Roe, Barbara; Watts, Michael J.; Hodson, Mark E.

2011-01-01

To assess the risks that contaminated soils pose to the environment properly a greater understanding of how soil biota influence the mobility of metal(loid)s in soils is required. Lumbricus terrestris L. were incubated in three soils contaminated with As, Cu, Pb and Zn. The concentration and speciation of metal(loid)s in pore waters and the mobility and partitioning in casts were compared with earthworm-free soil. Generally the concentrations of water extractable metal(loid)s in earthworm casts were greater than in earthworm-free soil. The impact of the earthworms on concentration and speciation in pore waters was soil and metal specific and could be explained either by earthworm induced changes in soil pH or soluble organic carbon. The mobilisation of metal(loid)s in the environment by earthworm activity may allow for leaching or uptake into biota. - Research highlights: → Earthworms increase the mobility and availability of metals and metalloids in soils. → We incubated L. terrestris in three soils contaminated with As, Cu, Pb and Zn. → Earthworms increased the mobility of As, Cu, Pb and Zn in their casts. → The mechanisms for this could be explained by changes in pH or organic carbon. - Lumbricus terrestris change the partitioning of metal(loid)s between soil constituents and increase the mobility of metal(loid)s in casts and pore water.

Impact of the earthworm Lumbricus terrestris (L.) on As, Cu, Pb and Zn mobility and speciation in contaminated soils

Energy Technology Data Exchange (ETDEWEB)

Sizmur, Tom, E-mail: t.p.sizmur@reading.ac.uk [Soil Research Centre, Department of Geography and Environmental Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading RG6 6DW (United Kingdom); Palumbo-Roe, Barbara; Watts, Michael J. [British Geological Survey, Kingsley Dunham Centre, Keyworth, Nottingham NG12 5GG (United Kingdom); Hodson, Mark E. [Soil Research Centre, Department of Geography and Environmental Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading RG6 6DW (United Kingdom)

2011-03-15

To assess the risks that contaminated soils pose to the environment properly a greater understanding of how soil biota influence the mobility of metal(loid)s in soils is required. Lumbricus terrestris L. were incubated in three soils contaminated with As, Cu, Pb and Zn. The concentration and speciation of metal(loid)s in pore waters and the mobility and partitioning in casts were compared with earthworm-free soil. Generally the concentrations of water extractable metal(loid)s in earthworm casts were greater than in earthworm-free soil. The impact of the earthworms on concentration and speciation in pore waters was soil and metal specific and could be explained either by earthworm induced changes in soil pH or soluble organic carbon. The mobilisation of metal(loid)s in the environment by earthworm activity may allow for leaching or uptake into biota. - Research highlights: > Earthworms increase the mobility and availability of metals and metalloids in soils. > We incubated L. terrestris in three soils contaminated with As, Cu, Pb and Zn. > Earthworms increased the mobility of As, Cu, Pb and Zn in their casts. > The mechanisms for this could be explained by changes in pH or organic carbon. - Lumbricus terrestris change the partitioning of metal(loid)s between soil constituents and increase the mobility of metal(loid)s in casts and pore water.

Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris

International Nuclear Information System (INIS)

Brinza, Loredana; Schofield, Paul F.; Hodson, Mark E.; Weller, Sophie; Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D.; Mosselmans, J. Frederick W.

2014-01-01

A new experimental set-up enabling microfocus fluorescence XANES mapping and microfocus XRD mapping on the same sample at beamline I18 at Diamond Light Source is described. To demonstrate this set-up the heterogeneous mineralogy in calcium carbonate granules excreted by the earthworm Lumbricus terrestris has been analysed. Data analysis methods have been developed which enable µXRD and µXANES two-dimensional maps to be compared. The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced

Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris

Energy Technology Data Exchange (ETDEWEB)

Brinza, Loredana [Diamond Light Source, Harwell Campus, Didcot, Oxon OX11 0DE (United Kingdom); Schofield, Paul F. [Natural History Museum, Cromwell Road, London SW7 5BD (United Kingdom); Hodson, Mark E. [University of York, York YO10 5DD (United Kingdom); Weller, Sophie [University of Oxford, South Parks Road, Oxford OX1 3QR (United Kingdom); Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D.; Mosselmans, J. Frederick W., E-mail: fred.mosselmans@diamond.ac.uk [Diamond Light Source, Harwell Campus, Didcot, Oxon OX11 0DE (United Kingdom)

2014-01-01

A new experimental set-up enabling microfocus fluorescence XANES mapping and microfocus XRD mapping on the same sample at beamline I18 at Diamond Light Source is described. To demonstrate this set-up the heterogeneous mineralogy in calcium carbonate granules excreted by the earthworm Lumbricus terrestris has been analysed. Data analysis methods have been developed which enable µXRD and µXANES two-dimensional maps to be compared. The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced.

Changes in microbial and nutrient composition associated with rumen content compost incubation.

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Shrestha, Karuna; Shrestha, Pramod; Adetutu, Eric M; Walsh, Kerry B; Harrower, Keith M; Ball, Andrew S; Midmore, David J

2011-02-01

Physico-chemical and microbiological investigations were carried out on rumen content material composted for nine months, fresh vermicasts (obtained after passing the same compost through the guts of a mixture of three species of earthworms: Eisenia fetida, Lumbricus rubellus and Perionyx excavates) and microbially enhanced extracts derived from rumen compost, vermicast and vermicast leachate incubated for up to 48 h. Compared to composted rumen contents, vermicast was only improved in terms of microbial biomass C, while vermicast leached extract was significantly higher in NH(4)(+)-N,PO(4)(-)-P, humic acid, bacterial counts and total microbial activity compared to rumen compost extract. Although no difference between treatments was observed in genetic diversity as indicated by DGGE analysis, community level functional diversity of vermicast leached extract (Biolog™) was higher than that of composted rumen contents, vermicast and rumen compost extract indicating an enhancement of microbial activity rather than diversity due to liquid incubation. Copyright © 2010 Elsevier Ltd. All rights reserved.

Effects of metal pollution on earthworm communities in a contaminated floodplain area: Linking biomarker, community and functional responses

International Nuclear Information System (INIS)

Gestel, Cornelis A.M. van; Koolhaas, Josee E.; Hamers, Timo; Hoppe, Maarten van; Roovert, Martijn van; Korsman, Cora; Reinecke, Sophie A.

2009-01-01

Effects on earthworms in the contaminated floodplain area the Biesbosch, the Netherlands, were determined at different levels of organization using a combination of field and laboratory tests. The species Lumbricus rubellus, collected from different polluted sites in the Biesbosch, showed reduced values for the biomarker neutral red retention time (NRRT), mainly explained by high metal concentrations in the soil and the resulting high internal copper concentrations in the earthworms. Organic pollutant levels in earthworms were low and did not explain reduced NRRTs. Earthworm abundance and biomass were not correlated with pollutant levels in the soil. Litterbag decomposition and bait-lamina feeding activity, measures of the functional role of earthworms, were not affected by metal pollution and did not show any correlation with metal concentrations in soil or earthworms nor with NRRT. Effects at the biochemical level therefore did not result in a reduced functioning of earthworm communities. - Metal pollution in floodplain soils does affect earthworm biomarker response but not their activity in decomposition processes

Communities of microorganisms and invertebrates in soil-like bodies of soccer fields in Moscow oblast

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Kutovaya, O. V.; Zamotaev, I. V.; Belobrov, V. P.

2014-11-01

Artificially created soil-like technogenic formations (STFs) of soccer fields are developed under combined action of intense technogenic and natural factors and processes, which cannot but affect the structure and biological activity of their microbial communities and mesofauna. The microflora of the STFs is very similar to the microflora of the background soddy-podzolic soils of Moscow oblast with respect to the composition of the physiological groups of microorganisms. However, they are drastically different in their quantitative characteristics. The numbers of all the trophic groups of microorganisms, except for the microscopic fungi, in the STFs are much higher than those in the zonal soils. An increased biological activity of the STFs is due to regular watering, heating, application of sand and mineral fertilizers, and technogenic turbation processes. The mesofauna of the STFs is represented by several ecological groups of earthworms, including soildwelling (endogeic) earthworms ( Aporrectodea caliginosa), epigeic earthworms dwelling at the soil-litter interface ( Lumbricus rubellus), and litter-dwelling earthworms ( Eisenia foetida).

Biosynthesis of luminescent quantum dots in an earthworm

Science.gov (United States)

Stürzenbaum, S. R.; Höckner, M.; Panneerselvam, A.; Levitt, J.; Bouillard, J.-S.; Taniguchi, S.; Dailey, L.-A.; Khanbeigi, R. Ahmad; Rosca, E. V.; Thanou, M.; Suhling, K.; Zayats, A. V.; Green, M.

2013-01-01

The synthesis of designer solid-state materials by living organisms is an emerging field in bio-nanotechnology. Key examples include the use of engineered viruses as templates for cobalt oxide (Co3O4) particles, superparamagnetic cobalt-platinum alloy nanowires and gold-cobalt oxide nanowires for photovoltaic and battery-related applications. Here, we show that the earthworm's metal detoxification pathway can be exploited to produce luminescent, water-soluble semiconductor cadmium telluride (CdTe) quantum dots that emit in the green region of the visible spectrum when excited in the ultraviolet region. Standard wild-type Lumbricus rubellus earthworms were exposed to soil spiked with CdCl2 and Na2TeO3 salts for 11 days. Luminescent quantum dots were isolated from chloragogenous tissues surrounding the gut of the worm, and were successfully used in live-cell imaging. The addition of polyethylene glycol on the surface of the quantum dots allowed for non-targeted, fluid-phase uptake by macrophage cells.

Autofluorescence in eleocytes of some earthworm species.

Directory of Open Access Journals (Sweden)

Barbara Płytycz

2006-04-01

Full Text Available Immunocompetent cells of earthworms, coelomocytes, comprise adherent amoebocytes and granular eleocytes (chloragocytes. Both cell populations can be expelled via dorsal pores of adult earthworms by exposure to an electric current (4.5 V for 1 min. Analysis by phase contrast/fluorescence microscopy and flow cytometry demonstrated that eleocyte population of several species exhibits a strong autofluorescence. A high percentage (11-35% of autofluorescent eleocytes was recorded in Allolobophora chlorotica, Dendrodrilus rubidus, Eisenia fetida, and Octolasion sp. (O. cyaneum, O. tyrtaeum tyrtaeum and O. tyrtaeum lacteum. In contrast, autofluorescent coelomocytes were exceptionally scarce (less than 1% in representative Aporrectodea sp. (A. caliginosa and A. longa and Lumbricus sp. (L. castaneus, L. festivus, L. rubellus, L. terrestris. Thus, this paper for the first time describes profound intrinsic fluorescence of eleocytes in some--but not all--earthworm species. The function (if any and inter-species differences of the autofluorescent coelomocytes still remain elusive.

Effects of metal pollution on earthworm communities in a contaminated floodplain area: Linking biomarker, community and functional responses

Energy Technology Data Exchange (ETDEWEB)

Gestel, Cornelis A.M. van [Institute of Ecological Science, VU University, De Boelelaan 1085, 1081 HV Amsterdam (Netherlands)], E-mail: kees.van.gestel@falw.vu.nl; Koolhaas, Josee E. [Institute of Ecological Science, VU University, De Boelelaan 1085, 1081 HV Amsterdam (Netherlands); Hamers, Timo [Institute of Environmental Studies, VU University, De Boelelaan 1085, 1081 HV Amsterdam (Netherlands); Hoppe, Maarten van; Roovert, Martijn van; Korsman, Cora [Institute of Ecological Science, VU University, De Boelelaan 1085, 1081 HV Amsterdam (Netherlands); Reinecke, Sophie A. [Department of Botany and Zoology, University of Stellenbosch, Private bag X1, Matieland 7602 (South Africa)

2009-03-15

Effects on earthworms in the contaminated floodplain area the Biesbosch, the Netherlands, were determined at different levels of organization using a combination of field and laboratory tests. The species Lumbricus rubellus, collected from different polluted sites in the Biesbosch, showed reduced values for the biomarker neutral red retention time (NRRT), mainly explained by high metal concentrations in the soil and the resulting high internal copper concentrations in the earthworms. Organic pollutant levels in earthworms were low and did not explain reduced NRRTs. Earthworm abundance and biomass were not correlated with pollutant levels in the soil. Litterbag decomposition and bait-lamina feeding activity, measures of the functional role of earthworms, were not affected by metal pollution and did not show any correlation with metal concentrations in soil or earthworms nor with NRRT. Effects at the biochemical level therefore did not result in a reduced functioning of earthworm communities. - Metal pollution in floodplain soils does affect earthworm biomarker response but not their activity in decomposition processes.

Mercury, cadmium and lead concentrations in different ecophysiological groups of earthworms in forest soils

International Nuclear Information System (INIS)

Ernst, Gregor; Zimmermann, Stefan; Christie, Peter; Frey, Beat

2008-01-01

Bioaccumulation of Hg, Cd and Pb by eight ecophysiologically distinct earthworm species was studied in 27 polluted and uncontaminated forest soils. Lowest tissue concentrations of Hg and Cd occurred in epigeic Lumbricus rubellus and highest in endogeic Octolasion cyaneum. Soils dominated by Dendrodrilus rubidus possess a high potential of risk of Pb biomagnification for secondary predators. Bioconcentration factors (soil-earthworm) followed the sequence ranked Cd > Hg > Pb. Ordination plots of redundancy analysis were used to compare HM concentrations in earthworm tissues with soil, leaf litter and root concentrations and with soil pH and CEC. Different ecological categories of earthworms are exposed to Hg, Cd and Pb in the topsoil by atmospheric deposition and accumulate them in their bodies. Species differences in HM concentrations largely reflect differences in food selectivity and niche separation. - Accumulation of non-essential heavy metals by earthworms is species-dependent and is affected by soil characteristics in natural forest soils

Do alterations in mesofauna community affect earthworms?

Science.gov (United States)

Uvarov, Alexei V; Karaban, Kamil

2015-11-01

Interactions between the saprotrophic animal groups that strongly control soil microbial activities and the functioning of detrital food webs, such as earthworms and mesofauna, are not well understood. Earthworm trophic and engineering activities strongly affect mesofauna abundance and diversity through various direct and indirect pathways. In contrast, mesofauna effects on earthworm populations are less evident; however, their importance may be high, considering the keystone significance of earthworms for the functioning of the soil system. We studied effects of a diverse mesofauna community of a deciduous forest on two earthworm species representing epigeic (Lumbricus rubellus) and endogeic (Aporrectodea caliginosa) ecological groups. In microcosms, the density of total mesofauna or its separate groups (enchytraeids, collembolans, gamasid mites) was manipulated (increased) and responses of earthworms and soil systems were recorded. A rise in mesofauna density resulted in a decrease of biomass and an increased mortality in L. rubellus, presumably due to competition with mesofauna for litter resources. In contrast, similar mesofauna manipulations promoted reproduction of A. caliginosa, suggesting a facilitated exploitation of litter resources due to increased mesofauna activities. Changes of microcosm respiration rates, litter organic matter content and microbial activities across the manipulation treatments indicate that mesofauna modify responses of soil systems in the presence of earthworms. However, similar mesofauna manipulations could induce different responses in soil systems with either epigeic or endogeic lumbricids, which suggests that earthworm/mesofauna interactions are species-specific. Thus, mesofauna impacts should be treated as a factor affecting the engineering activities of epigeic and endogeic earthworms in the soil.

Novel mobbing strategies of a fish population against a sessile annelid predator.

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Lachat, Jose; Haag-Wackernagel, Daniel

2016-09-12

When searching for food, foraging fishes expose themselves to hidden predators. The strategies that maximize the survival of foraging fishes are not well understood. Here, we describe a novel type of mobbing behaviour displayed by foraging Scolopsis affinis. The fish direct sharp water jets towards the hidden sessile annelid predator Eunice aphroditois (Bobbit worm). We recognized two different behavioural roles for mobbers (i.e., initiator and subsequent participants). The first individual to exhibit behaviour indicating the discovery of the Bobbit directed, absolutely and per time unit, more water jets than the subsequent individuals that joined the mobbing. We found evidence that the mobbing impacted the behaviour of the Bobbit, e.g., by inducing retraction. S. affinis individuals either mob alone or form mobbing groups. We speculate that this behaviour may provide social benefits for its conspecifics by securing foraging territories for S. affinis. Our results reveal a sophisticated and complex behavioural strategy to protect against a hidden predator.

Introduced earthworm species exhibited unique patterns of seasonal activity and vertical distribution, and Lumbricus terrestris burrows remained usable for at least 7 years in hardwood and pine stands

Science.gov (United States)

Lynette R. Potvin; Erik A. Lilleskov

2017-01-01

It is difficult to obtain non-destructive information on the seasonal dynamics of earthworms in northern forest soils. To overcome this, we used a Rhizotron facility to compile 7 years of data on the activity of anecic (Lumbricus terrestris) and endogeic (Aporrectodea caliginosa complex) earthworms in two contrasting soil/plant...

Biophysical Properties of Lumbricus terrestris Erythrocruorin and Its Potential Use as a Red Blood Cell Substitute

Directory of Open Access Journals (Sweden)

Jacob Elmer

2012-01-01

Full Text Available Previous generations of hemoglobin (Hb-based oxygen carriers (HBOCs have been plagued by key biophysical limitations that result in severe side-effects once transfused in vivo, including protein instability, high heme oxidation rates, and nitric oxide (NO scavenging. All of these problems emerge after mammalian Hbs are removed from red blood cells (RBCs and used for HBOC synthesis/formulation. Therefore, extracellular Hbs (erythrocruorins from organisms which lack RBCs might serve as better HBOCs. This review focuses on the erythrocruorin of Lumbricus terrestris (LtEc, which has been shown to be extremely stable, resistant to oxidation, and may interact with NO differently than mammalian Hbs. All of these beneficial properties show that LtEc is a promising new HBOC which warrants further investigation.

Pengaruh penambahan kultur azotobacter pada feses kambing terhadap kualitas media dan produktivitas cacing tanah (Lumbricus rubellus

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Nur Cholis

2016-08-01

Full Text Available The purposes of this research were to determine the effect of addition of Azotobacter bacterial culture into media of goat faeces on medium quality and earthworm productivity; and also to examine the best dose of Azotobacter bacterial cultures addition. The research material was 800 g earthworm aged 3 months old. The research method was experimental with Completely Randomized Design using 4 treatments and 4 replications. The results show that addition of Azotobacter bacterial culture had a significant effect (P<0.01 on the medium quality and earthworm productivity (coccoon production, the number of juvenils per coccoon, coccoon hatching percentage, the numbers and weight of earthworm. The bacterial culture addition of 350 cc/100 kg goat faeces was found the best. We suggest to follow the study with observation about the effect of the length of fermentation to the medium quality and earthworm productivity. Keywords: Azotobacter, goat faeces, earthworm

Bioavailability and cellular effects of metals on Lumbricus terrestris inhabiting volcanic soils

International Nuclear Information System (INIS)

Amaral, Andre; Soto, Manu; Cunha, Regina; Marigomez, Ionan; Rodrigues, Armindo

2006-01-01

Whether the radial thickness (RT) of the chloragogenous tissue and intestinal epithelium of earthworms (Lumbricus terrestris) reflects the bioavailability of metals in soils was investigated in two areas, one with active volcanism (Furnas) and another with no volcanic activity since 3 million years ago (Santa Maria), in the Azores. Metal contents in soil samples and earthworms from the two areas were analyzed. Autometallography and measurements of the RT were performed in the chloragogenous tissue and intestinal epithelium. Earthworms from the active volcanic area demonstrated lower RT of chloragogenous tissue and intestinal epithelium as well as higher levels of bioavailable metals, especially Zn and Cd. Comparison of bioavailable metal contents between both areas suggests a higher risk for uptake of potentially toxic metals in the active volcanic area than in the non-active volcanic area, which is reflected by the lower RT of the chloragogenous tissue and intestinal epithelium in the former. - In earthworms, differences in the chloragogenous tissue morphometry may be related to the bioavailability of metals in soils

Fate and sublethal effects of isoproturon on mature earthworm (Lumbricus terrestris L.).

Science.gov (United States)

Mosleh, Y Y; Paris-Palacios, S; Couderchet, M; Vernet, G

2002-01-01

This study was conducted to investigate the effects of isoproturon in mature earthworm (Lumbricus terrestris L.) under laboratory condition. Earthworms were exposed to soils contaminated with different concentrations for various duration. Residues were monitored in soil and earthworms after 7, 15, 30, 45, and 60 days of exposure to different isoproturon concentrations. Acute toxicity of isoproturon was determined together with growth rate and total soluble protein content of worms. These parameters were related to isoproturon concentration in soil and earthworms. No lethal effect of isoproturon was observed even at the highest concentration tested (1.4 g/kg soil) after 60 days after treatment. Residues of isoproturon have caused a significant reduction of the growth rate. Additionally a reduction of total soluble protein was observed in all treated worms. Decrease of isoproturon concentration in soil was slow and depended on herbicide initial concentration. In the worms, it increased during the first 15 days and decreased thereafter. This study is suggesting the use of the growth rate of earthworms as biomarker of exposure to isoproturon.

Earthworm introduction on calcareous minesoils

International Nuclear Information System (INIS)

Vimmerstedt, J.P.; Kost, D.A.

1994-01-01

Burrowing activity of the nightcrawler, Lumbricus terrestis (L.t.), incorporates organic matter into mineral soil while creating long-lasting macropores. Thus L.t. has potential as a biological means of improving physical and chemical properties of surface mined areas. Efforts to establish L.t. population on forested acidic or calcareous minesoils have been successful, but thus far have not been able to establish L.t. in grassland ecosystems on calcareous minesoils. In May, 1989, the authors put 11 clitellate L.t. under sphagnum moss on calcareous gray cast overburden on standard graded topsoil, or on ripped and disked topsoil. All soils had cover of agronomic grasses and legumes. They found no L.t. at the 24 points of inoculation during sampling in fall of 1990 with formalin extractant, although smaller species, Lumbricus rubellus and Dendrobaena spp., were found. At another location, in May, 1990, they put 25 clitellate L.t. at 16 points in grasslands growing on gray cast overburden. Using formalin extraction, they found no L.t. in May 1992 at these locations. Working in this same area in November, 1992, they released 10 clitellate L.t. at 16 points under 10 cm of moist Alnus glutinosa leaf litter. Careful examination of the surface inoculation points in spring and fall of 1993 did not show obvious signs of earthworm activity. Their next step will be to use Earthworm Inoculation Units (earthworm-minesoil microcosms containing L.t. adults, immatures, and cocoons) as the source of the new populations

Enhancing the understanding of earthworm feeding behaviour via the use of fatty acid delta13C values determined by gas chromatography-combustion-isotope ratio mass spectrometry.

Science.gov (United States)

Dungait, Jennifer A J; Briones, Maria J I; Bol, Roland; Evershed, Richard P

2008-06-01

Litter-dwelling (epigeic) Lumbricus rubellus and soil-dwelling (endogeic) Allolobophora chlorotica earthworms were observed aggregating under C(3) (delta(13)C = -31.3 per thousand; delta(15)N = 10.7 per thousand) and C(4) (delta(13)C = -12.6 per thousand; delta(15)N = 7.5 per thousand) synthetic dung pats applied to a temperate grassland (delta(13)C = -30.3 per thousand; delta(15)N = 5.7 per thousand) in an experiment carried out for 372 days. Bulk delta(13)C values of earthworms collected from beneath either C(3) or C(4) dung after 28, 56, 112 and 372 days demonstrated that (i) L. rubellus beneath C(4) dung were significantly (13)C-enriched after 56 days (delta(13)C = -23.8 per thousand) and 112 days (delta(13)C = -22.4 per thousand) compared with those from C(3) dung treatments (56 days, delta(13)C = -26.5 per thousand; 112 days, delta(13)C = -27.0 per thousand), and (ii) A. chlorotica were 2.1 per thousand (13)C-enriched (delta(13)C = -24.2 per thousand) relative to those from C(3) dung (delta(13)C = -26.3 per thousand) treatments after 372 days. Bulk delta(15)N values did not suggest significant uptake of dung N by either species beneath C(3) or C(4) dung, but showed that the endogeic species (total mean delta(15)N = 3.3 per thousand) had higher delta(15)N values than the epigeic species (total mean delta(15)N = 5.4 per thousand). Although the two species exhibited similar fatty acid profiles, individual fatty acid delta(13)C values revealed extensive routing of dietary C into body tissue of L. rubellus, but minor incorporation into A. chlorotica. In particular, the direct incorporation of microbial biomarker fatty acids (iC(17:0), aC(17:0)) from (13)C-labelled dung in situ, the routing of dung C into de novo synthesised compounds (iC(20:4)(omega)(6),C(20:5)(omega)(3), and the assimilation of essential fatty acids ((C(18:1)(omega)(9), C(18:1)(omega(7), C(18:2)(omega(6), C(18:3)(omega)(3)) derived from dung, were determined. John Wiley & Sons, Ltd

Measurement and simulation of unmyelinated nerve electrostimulation: Lumbricus terrestris experiment and numerical model.

Science.gov (United States)

Šarolić, A; Živković, Z; Reilly, J P

2016-06-21

The electrostimulation excitation threshold of a nerve depends on temporal and frequency parameters of the stimulus. These dependences were investigated in terms of: (1) strength-duration (SD) curve for a single monophasic rectangular pulse, and (2) frequency dependence of the excitation threshold for a continuous sinusoidal current. Experiments were performed on the single-axon measurement setup based on Lumbricus terrestris having unmyelinated nerve fibers. The simulations were performed using the well-established SENN model for a myelinated nerve. Although the unmyelinated experimental model differs from the myelinated simulation model, both refer to a single axon. Thus we hypothesized that the dependence on temporal and frequency parameters should be very similar. The comparison was made possible by normalizing each set of results to the SD time constant and the rheobase current of each model, yielding the curves that show the temporal and frequency dependencies regardless of the model differences. The results reasonably agree, suggesting that this experimental setup and method of comparison with SENN model can be used for further studies of waveform effect on nerve excitability, including unmyelinated neurons.

Molecular genetic differentiation in earthworms inhabiting a heterogeneous Pb-polluted landscape

International Nuclear Information System (INIS)

Andre, J.; King, R.A.; Stuerzenbaum, S.R.; Kille, P.; Hodson, M.E.; Morgan, A.J.

2010-01-01

A Pb-mine site situated on acidic soil, but comprising of Ca-enriched islands around derelict buildings was used to study the spatial pattern of genetic diversity in Lumbricus rubellus. Two distinct genetic lineages ('A' and 'B'), differentiated at both the mitochondrial (mtDNA COII) and nuclear level (AFLPs) were revealed with a mean inter-lineage mtDNA sequence divergence of approximately 13%, indicative of a cryptic species complex. AFLP analysis indicates that lineage A individuals within one central 'ecological island' site are uniquely clustered, with little genetic overlap with lineage A individuals at the two peripheral sites. FTIR microspectroscopy of Pb-sequestering chloragocytes revealed different phosphate profiles in residents of adjacent acidic and calcareous islands. Bioinformatics found over-representation of Ca pathway genes in EST Pb libraries. Subsequent sequencing of a Ca-transport gene, SERCA, revealed mutations in the protein's cytosolic domain. We recommend the mandatory genotyping of all individuals prior to field-based ecotoxicological assays, particularly those using discriminating genomic technologies. - Landscapes punctuated by Pb-polluted islands have engendered local genetic differentiation in resident earthworms.

Risk assessment of metals and organic pollutants for herbivorous and carnivorous small mammal food chains in a polluted floodplain (Biesbosch, The Netherlands)

International Nuclear Information System (INIS)

Hamers, Timo; Berg, Johannes H.J. van den; Gestel, Cornelis A.M. van; Schooten, Frederik-Jan van; Murk, Albertinka J.

2006-01-01

A risk assessment was made for a carnivorous and a herbivorous food chain in a heavily polluted natural estuary (Biesbosch), by determining the most critical pollutants and the food chain most at risk. Exposure of food chains to metals, polycyclic aromatic hydrocarbons (PAHs), and polychlorinated biphenyls (PCBs) was assessed by analyzing dietary concentrations, internal concentrations, and biomarkers of exposure. Common shrew (Sorex araneus) and bank vole (Clethrionomys glareolus) were selected as representative small mammal species for the carnivorous and herbivorous food chain, respectively, and earthworms (Lumbricus rubellus) and snails (Cepaea nemoralis) as representative prey species for the carnivorous food chain. Metals contributed most to the total risk for small mammals and earthworms. PCBs, but not PAHs, contributed to the overall risk for S. araneus at regularly flooded locations. The carnivorous food chain appeared most at risk given the higher exposure levels and bioaccumulating potency found for contaminants in S. araneus. - In polluted floodplain areas, dietary exposure to metals poses a larger risk for small mammals in a carnivorous than in a herbivorous food chain

Toxicity and bioaccumulation of chlorophenols in earthworms, in relation to bioavailability in soil

Energy Technology Data Exchange (ETDEWEB)

van Gestel, C.A.; Ma, W.C.

1988-06-01

The acute toxicity of five chlorophenols for two earthworm species was determined in two sandy soils differing in organic matter content and the results were compared with adsorption data. Adsorption increased with increasing organic matter content of the soils, but for tetra- and pentachlorophenol was also influenced by soil pH. Earthworm toxicity was significantly higher in the soil with a low level of organic matter. This difference disappeared when LC50 values were recalculated to concentrations in soil solution using adsorption data. Eisenia fetida andrei showed LC50 values lower than those of Lumbricus rubellus although bioaccumulation was generally higher in the latter species. Toxicity and bioaccumulation based on soil solution concentrations increased with increasing lipophilicity of the chlorophenols. The present results indicate that the toxicity and bioaccumulation and therefore the bioavailability of chlorophenols in soil to earthworms are dependent on the concentration in soil solution and can be predicted on the basis of adsorption data. Both the toxicity of and bioaccumulation data on chlorophenols in earthworms demonstrated surprisingly good agreement with those on chlorophenols in fish.

Behavioural responses of the yellow emitting annelid Tomopteris helgolandica to photic stimuli.

Science.gov (United States)

Gouveneaux, Anaïd; Gielen, Marie-Charlotte; Mallefet, Jérôme

2018-05-01

In contrast to most mesopelagic bioluminescent organisms specialised in the emission and reception of blue light, the planktonic annelid Tomopteris helgolandica produces yellow light. This unusual feature has long been suggested to serve for intraspecific communication. Yet, this virtually admitted hypothesis has never been tested. In this behavioural study of spectral colour sensitivity, we first present an illustrated repertoire of the postures and action patterns described by captive specimens. Then video tracking and motion analysis are used to quantify the behavioural responses of singled out worms to photic stimuli imitating intraspecific (yellow) or interspecific (blue) bioluminescent signals. We show the ability of T. helgolandica to react and to contrast its responses to bioluminescent-like blue and yellow light signals. In particular, the attractive effect of yellow light and the variation of angular velocity observed according to the pattern of yellow stimuli (flashes versus glows) support the intraspecific communication hypothesis. However, given the behavioural patterns of T. helgolandica, including mechanically induced light emission, the possibility that bioluminescence may be part of escape/defence responses to predation, should remain an open question. Copyright © 2018 John Wiley & Sons, Ltd.

Effect of feed supplement containing earthworm meal (Lumbricus rubellus) on production performance of quail (Coturnix coturnix japonica)

Science.gov (United States)

Istiqomah, L.; Sakti, A. A.; Suryani, A. E.; Karimy, M. F.; Anggraeni, A. S.; Herdian, H.

2017-12-01

The objective of this study was to evaluate the effect of feed supplement (FS) contained earthworm meal (EWM) on production performance of laying quails. Twenty weeks-old of 360 Coturnix coturnix japonica quails were used in a Completely Randomized Design (CRD) with three dietary treatments A = CD (control without FS), B = CD + 0.250 % of FS, and C = CD + 0.375 % of FS during 6 weeks of experimental period. Each treatment in 4 equal replicates in which 30 quails were randomly allocated into 12 units of cages. Variable measured were feed intake, feed conversion ratio, feed efficiency, mortality rate, hen day production, egg weight, and egg uniformity. Data were statistically analyzed by One Way ANOVA and the differences among mean treatments are analysed using Duncan’s Multiple Range Test (DMRT). The results showed that administration of 0.375% FS based on earthworm meal, fermented rice bran, and skim milk impaired the feed conversion ratio and increased the feed efficiency. The experimental treatments did not effect on feed intake, mortality, hen day production, egg weight, and egg uniformity of quail. It is concluded that administration of feed supplement improved the growth performance of quail.

Development of a suitable test method for evaluating the toxicity of contaminated soils to earthworms in Canada

Energy Technology Data Exchange (ETDEWEB)

Stephenson, G.L. [Univ. of Guelph, Ontario (Canada); Scroggins, R. [Environment Canada, Gloucester, Ontario (Canada). Method Development and Application Section

1995-12-31

Environment Canada has embarked on a five year program to develop, standardize, and validate a battery of soil toxicity tests which can be used to assess the relative toxicity of contaminants in soils to terrestrial organisms. These tests must be applicable to soil conditions typically found in Canadian environments and the test species must be representative of the species of soil invertebrates or plants inhabiting soil ecosystems in Canada. One of the toxicity tests being developed is designed to assess the toxicity of contaminated soils to earthworms. Five of the potential test species belong to the Lumbricidae family and include the Canadian worm (Allobophora calignosa/Aporrectodea tuberculate), the European bark worm (Dendrodtilus rubidus (rubida)), the pink soil worm (Eisenia rosea), the red marsh worm (Lumbricus rubellus), and the Canadian night crawler or dew worm (Lumbricus terrestris). The sixth species, the white pot worm (Enchytraeus albidus), belongs to the Enchytraeidae family. Further assessment reduced the number of representative species to three. Most earthworm test methods have been developed to assess the toxicity of chemically-spiked artificial soils to Eisenia fetida or E. andrei. Test methods have also been developed to assess the relative toxicity of contaminated soils from hazardous waste sites. Comparative acute toxicity data for three species of earthworm exposed to a hydrocarbon contamination will be presented. Comparative toxicity data for the same three species of earthworm will also be presented using test procedures and conditions that have been modified to accommodate biological differences among the species of earthworm. Recommendations regarding test design, methods, and conditions optimal for each test species will be summarized and discussed with respect to the precision of test results.

Expression of the pair-rule gene homologs runt, Pax3/7, even-skipped-1 and even-skipped-2 during larval and juvenile development of the polychaete annelid Capitella teleta does not support a role in segmentation

Directory of Open Access Journals (Sweden)

Seaver Elaine C

2012-04-01

Full Text Available Abstract Background Annelids and arthropods each possess a segmented body. Whether this similarity represents an evolutionary convergence or inheritance from a common segmented ancestor is the subject of ongoing investigation. Methods To investigate whether annelids and arthropods share molecular components that control segmentation, we isolated orthologs of the Drosophila melanogaster pair-rule genes, runt, paired (Pax3/7 and eve, from the polychaete annelid Capitella teleta and used whole mount in situ hybridization to characterize their expression patterns. Results When segments first appear, expression of the single C. teleta runt ortholog is only detected in the brain. Later, Ct-runt is expressed in the ventral nerve cord, foregut and hindgut. Analysis of Pax genes in the C. teleta genome reveals the presence of a single Pax3/7 ortholog. Ct-Pax3/7 is initially detected in the mid-body prior to segmentation, but is restricted to two longitudinal bands in the ventral ectoderm. Each of the two C. teleta eve orthologs has a unique and complex expression pattern, although there is partial overlap in several tissues. Prior to and during segment formation, Ct-eve1 and Ct-eve2 are both expressed in the bilaterial pair of mesoteloblasts, while Ct-eve1 is expressed in the descendant mesodermal band cells. At later stages, Ct-eve2 is expressed in the central and peripheral nervous system, and in mesoderm along the dorsal midline. In late stage larvae and adults, Ct-eve1 and Ct-eve2 are expressed in the posterior growth zone. Conclusions C. teleta eve, Pax3/7 and runt homologs all have distinct expression patterns and share expression domains with homologs from other bilaterians. None of the pair-rule orthologs examined in C. teleta exhibit segmental or pair-rule stripes of expression in the ectoderm or mesoderm, consistent with an independent origin of segmentation between annelids and arthropods.

Investigations performed on the compost worm Eisenia fetida and selected species of earthworms concerning the intake of HCB and pyrene with the goal of deriving a bioaccumulation test; Untersuchungen zur Aufnahme von HCB und Pyren durch den Kompostwurm Eisenia fetida und ausgewaehlte Regenwurmwildarten. Ableitung eines Bioakkumulationstests

Energy Technology Data Exchange (ETDEWEB)

Vespermann, A.; Riepert, F.; Pflugmacher, J. [Biologische Bundesanstalt fuer Land- und Forstwirtschaft, Inst. fuer Oekotoxikologie im Pflanzenschutz, Berlin (Germany)

2003-07-01

The man issues of the studies described were the validation of a test design for the assessment of the bioaccumulation potential of environmental pollutants and the applicability of Eisenia fetida as a model-organism and artificial soil (OECD) as a standard test substrate. The test organisms used were E. fetida of our own breeding stock and Allolobophora caliginosa, Allolobophora chlorotica, Allolobophora longa and Lumbricus rubellus sampled from a field site. Test soils used were the artificial soil (OECD) and a BBA field soil. Soils were each contaminated with 10 mg HCB and Pyrene per soil dry-weight. Within the test period of 4 weeks, samples were taken weekly for residue analysis in the worms and soils. Bioaccumulation factors (AF) calculated for E. fetida and the free-living species were in the range of 10-17 (HCB) and 0.9-1.7 (Pyrene) depending on the soil used. By re-calculation of the concentrations in soil to concentrations in soil water, the resulting bioconcentration factors are compared with published BCF values determined from QSAR's of other worm species and fresh water fish. It could be concluded that the existing earthworm tests (OECD 1984, ISO 1998) represent an appropriate design for testing the bioconcentration potential of chemicals in soil. (orig.) [German] Ziel der beschriebenen Untersuchungen war die praktische Ueberpruefung eines Methodenentwurfs zur Erfassung der Bioakkumulation von Umweltchemikalien mit Eisenia fetida, der Eignung von E. fetida als Modellorganismus und des OECD-Kunstbodens als Standardsubstrat. Als Testorganismen wurden aus eigener Zucht der Kompostwurm Eisenia fetida und nach Feldentnahme Allolobophora caliginosa, Allolobophora chlorotica, Allolobophora longa und Lumbricus rubellus eingesetzt. Testboeden waren der OECD-Kunstboden und ein Boden vom Versuchsfeld der BBA in Berlin-Dahlem. Beiden Boeden wurden die Testsubstanzen Hexachlorbenzol und Pyren in einer Konzentration von 10 mg/kg Bodentrockengewicht zugemischt

The effect of anthropogenic contaminations (PAH, PCB) on terrestrial annelids in conurban ecosystems. Final report; Einfluss von anthropogenen Schadstoffen (PAK und PCB) auf terrestrische Invertebraten urbaner Oekosysteme. Abschlussbericht

Energy Technology Data Exchange (ETDEWEB)

Achazi, R.K.; Beylich, A.; Chroszcz, G.; Dueker, C.; Heck, M.; Henneken, M.; Flenner, C.; Froehlich, E.; Garbers, U.; Khan, M.A.; Kreibich, M.; Kronshage, J.; Philippe, L.; Pilz, C.; Rothe, B.; Schabedoth, E.; Schaub, K.; Scheiwe, E.; Schmid, C.; Steudel, I.; Struwe, M.; Throl, C.; Wuertz, S. [Freie Univ. Berlin (Germany); Back, H.; Naehring, D.; Thielemann, U. [Gesellschaft fuer Angewandte Oekologie und Umweltplanung mbH, Nussloch (Germany)

1997-09-23

The project was conducted from August 1993 until May 1997. The objectives were (a) an elaboration of effect concentrations and index values for organic contaminants (PAH, PCB) and heavy metals in soil of conurbations for the community of decomposers, (b) the improvement of a biotest system for the evaluation of the habitat function of contaminated soils and (c) to obtain informations concerning a controlled utilization of contaminated areas. For that purpose field investigations in former sewage water irrigation areas of Berlin, Germany, concerning the abundance, species composition and dominance structure of terrestrial annelids (Enchytraeids, Lumbricids) were performed, as well as bioassays using contaminated soils of these sites and soils spiked with bezo(a)pyrene, fluoranthene, PCB 52, Cd and Cu and experiments on accumulation, elimination and biotransformation in annelids. 12 of the 17 sites investigated lacked earthworms, while only 2 sites lacked enchytraeids. The abundance of enchytraeids was in the range of 500 to 12.500/m{sup 2}, compared to 25.000 to 280.000/m{sup 2} on reference sites. The hostility of the soils of former irrigation fields to annelids was confirmed by lamina bait tests and by bioassays with Enchytraeus crypticus, E. albidus, E. buchholzi and Eisenia f. fetida. The ecotoxicity of the combined contaminants was enforced by the acidity and the degradation of the soils. The toxicity of organic and inorganic contaminants to terrestrial annelids was definitely proved by reproduction tests in the agar test system. The applied methods of investigation can be used for evaluation of contaminated soils. (orig.) [Deutsch] Das Projekt wurde von August 1993 bis Mai 1997 durchgefuehrt. Ziele waren die Erarbeitung (a) von Wirkschwellen fuer organische Schadstoffgruppen (PAK, PCB) und Schwermetalle im Boden fuer Destruenten urbaner Oekosysteme, (b) von Biotestsystemen zur Bewertung der Lebensraumfunktion belasteter Boeden und (c) von Hinweisen zur

Effect of earthworm (Lumbricus rubellus) in feed formulation to improve fatty acids profile in eel (Anguilla bicolor) meat

Science.gov (United States)

Farah, K.; Gunawan, I. R.; Putra, G. B.; Agustono; Lokapirnasari, W. P.; Lamid, M.; Masithah, E. D.; Nurhajati, T.; Rozi

2018-04-01

Eel requires unsaturated fatty acids of linolenic acid for growth. Which can be supplied from earthworms. In this study, addition of earthworm in formulation feed aimsed to improve the fatty acid profile eel meat. This research used experimental method and randomized complete design method with five treatments. Each treatment was repeated four times. The use of earthworms in feeding treatment formulation was done for 21 days with different level i.e: 0 % (P0), 25 % (P1), 50 % (P2), 75 % (P3) and 100 % (P4). The result showed that the addition of eartworm significantly influenced the omega 3 contents (EPA & DHA) of eel meat.

The ontogeny of nanos homologue expression in the oligochaete annelid Tubifex tubifex.

Science.gov (United States)

Mohri, Ki-Ichi; Nakamoto, Ayaki; Shimizu, Takashi

2016-01-01

We have cloned and characterized the expression of a nanos homologue (designated Ttu-nos) from the oligochaete annelid Tubifex tubifex. Ttu-nos mRNA is distributed broadly throughout the early cleavage stages. Ttu-nos is expressed in most if not all of the early blastomeres, in which Ttu-nos RNA associates with pole plasms. Ttu-nos transcripts are concentrated to 2d and 4d cells. Shortly after 2d(111) (derived from 2d cell) divides into a bilateral pair of NOPQ proteloblasts, Ttu-nos RNA vanishes from the embryo, which is soon followed by the resumption of Ttu-nos expression in nascent primary blast cells produced by teloblasts. The resumption of Ttu-nos expression occurs only in a subset of teloblast lineages (viz., M, N and Q). After Ttu-nos expression is retained in the germ band for a while, it disappears in anterior-to-posterior progression. At the end of embryogenesis, there is no trace of Ttu-nos expression. Thereafter, growing juveniles do not show any sign of Ttu-nos expression, either. The first sign of Ttu-nos expression is detected in oocytes in the ovary of young adults (ca 40 days after hatching), and its expression continues in growing oocytes that undergo yolk deposition and maturation in the ovisac. Copyright © 2015 Elsevier B.V. All rights reserved.

Gonad establishment during asexual reproduction in the annelid Pristina leidyi.

Science.gov (United States)

Özpolat, B Duygu; Bely, Alexandra E

2015-09-01

Animals that can reproduce by both asexual agametic reproduction and sexual reproduction must transmit or re-establish their germ line post-embryonically. Although such a dual reproductive mode has evolved repeatedly among animals, how asexually produced individuals establish their germ line remains poorly understood in most groups. We investigated germ line development in the annelid Pristina leidyi, a species that typically reproduces asexually by paratomic fission, intercalating a new tail and head in the middle of the body followed by splitting. We found that in fissioning individuals, gonads occur in anterior segments in the anterior-most individual as well as in new heads forming within fission zones. Homologs of the germ line/multipotency genes piwi, vasa, and nanos are expressed in the gonads, as well as in proliferative tissues including the posterior growth zone, fission zone, and regeneration blastema. In fissioning animals, certain cells on the ventral nerve cord express a homolog of piwi, are abundant near fission zones, and sometimes make contact with gonads. Such cells are typically undetectable near the blastema and posterior growth zone. Time-lapse imaging provides direct evidence that cells on the ventral nerve cord migrate preferentially towards fission zones. Our findings indicate that gonads form routinely in fissioning individuals, that a population of piwi-positive cells on the ventral nerve cord is associated with fission and gonads, and that cells resembling these piwi-positive cells migrate along the ventral nerve cord. We suggest that the piwi-positive ventral cells are germ cells that transmit the germ line across asexually produced individuals via migration along the ventral nerve cord. Copyright © 2015 Elsevier Inc. All rights reserved.

Earthworm Protease

Directory of Open Access Journals (Sweden)

Rong Pan

2010-01-01

Full Text Available The alimentary tract of earthworm secretes a group of proteases with a relative wide substrate specificity. In 1983, six isozymes were isolated from earthworm with fibrinolytic activities and called fibriniolytic enzymes. So far, more isozymes have been found from different earthworm species such as Lumbricus rubellus and Eisenia fetida. For convenience, the proteases are named on the basis of the earthworm species and the protein function, for instance, Eisenia fetida protease (EfP. The proteases have the abilities not only to hydrolyze fibrin and other protein, but also activate proenzymes such as plasminogen and prothrombin. In the light of recent studies, eight of the EfPs contain oligosaccharides chains which are thought to support the enzyme structure. Interestingly, EfP-II has a broader substrate specificity presenting alkaline trypsin, chymotrypsin and elastase activities, but EfP-III-1 has a stricter specificity. The protein crystal structures show the characteristics in their specificities. Earthworm proteases have been applied in several areas such as clinical treatment of clotting diseases, anti-tumor study, environmental protection and nutritional production. The current clinical utilizations and some potential new applications of the earthworm protease will be discussed in this paper.

Molecular genetic differentiation in earthworms inhabiting a heterogeneous Pb-polluted landscape

Energy Technology Data Exchange (ETDEWEB)

Andre, J., E-mail: Andrej@cardiff.ac.u [Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10 3TL (United Kingdom); Department of Soil Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading RG6 6DW (United Kingdom); King, R.A. [Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10 3TL (United Kingdom); Stuerzenbaum, S.R. [King' s College London, School of Biomedical and Health Sciences, Pharmaceutical Sciences Division, London SE1 9NH (United Kingdom); Kille, P. [Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10 3TL (United Kingdom); Hodson, M.E. [Department of Soil Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading RG6 6DW (United Kingdom); Morgan, A.J. [Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10 3TL (United Kingdom)

2010-03-15

A Pb-mine site situated on acidic soil, but comprising of Ca-enriched islands around derelict buildings was used to study the spatial pattern of genetic diversity in Lumbricus rubellus. Two distinct genetic lineages ('A' and 'B'), differentiated at both the mitochondrial (mtDNA COII) and nuclear level (AFLPs) were revealed with a mean inter-lineage mtDNA sequence divergence of approximately 13%, indicative of a cryptic species complex. AFLP analysis indicates that lineage A individuals within one central 'ecological island' site are uniquely clustered, with little genetic overlap with lineage A individuals at the two peripheral sites. FTIR microspectroscopy of Pb-sequestering chloragocytes revealed different phosphate profiles in residents of adjacent acidic and calcareous islands. Bioinformatics found over-representation of Ca pathway genes in EST{sub Pb} libraries. Subsequent sequencing of a Ca-transport gene, SERCA, revealed mutations in the protein's cytosolic domain. We recommend the mandatory genotyping of all individuals prior to field-based ecotoxicological assays, particularly those using discriminating genomic technologies. - Landscapes punctuated by Pb-polluted islands have engendered local genetic differentiation in resident earthworms.

INVESTIGATIONS ON THE IMPACT OF NANOPARTICLES IN ENVIRONMENTAL SUSTAINABILITY AND ECOTOXICITY

Directory of Open Access Journals (Sweden)

Antonietta M. Gatti

2012-07-01

Full Text Available A special greenhouse was constructed to verify the impact of nanoparticles dispersed in air and in the soil on plant and small animal models.  A 40x4m2 greenhouse was divided in two specular parts in order to have a polluted area (B  and the reference one (A. Two different systems to spray nanoparticles (NPs were set up: the first consists in a combustion of wood or coke perfused with an alcoholic solution containing Copper and Cobalt NPs and following emission of the micro and nanosized by-products in the greenhouse. The second system is a suitable sprayer of NPs starting from a water solution of engineered NPs of Cobalt, Nickel, Silver, Titania, Cerine. Plants (tomato, rice, tillandsia and moss and insects (Ceratitis capitata were exposed to NPs according to specific protocols, as well as  aquatic marine animal models (Earth worms (Lumbricus rubellus, Sea urchins (Paracentrotus lividus, Brine shrimps (Artemia salina, Zebrafish (Danio rerio, Barnacles (Balanus amphitrite. The results indicate that the NPs produce some effects in photosinthesis in the plant and biological damages at the developmental stage in the sea urchins.

Earthworm Protease

International Nuclear Information System (INIS)

Pan, R.; Zhang, Z.; He, R.

2010-01-01

The alimentary tract of earthworm secretes a group of proteases with a relative wide substrate specificity. In 1983, six isozymes were isolated from earthworm with fibrinolytic activities and called fibrinolytic enzymes. So far, more isozymes have been found from different earthworm species such as Lumbricus rubellus and Eisenia fetida. For convenience, the proteases are named on the basis of the earthworm species and the protein function, for instance, Eisenia fetida protease (EfP). The proteases have the abilities not only to hydrolyze fibrin and other protein, but also activate pro enzymes such as plasminogen and prothrombin. In the light of recent studies, eight of the EfPs contain oligosaccharides chains which are thought to support the enzyme structure. Interestingly, EfP-II has a broader substrate specificity presenting alkaline trypsin, chymotrypsin and elastase activities, but EfP-III-1 has a stricter specificity. The protein crystal structures show the characteristics in their specificities. Earthworm proteases have been applied in several areas such as clinical treatment of clotting diseases, anti-tumor study, environmental protection and nutritional production. The current clinical utilizations and some potential new applications of the earthworm protease will be discussed in this paper.

Tissue distribution, isozyme abundance and sensitivity to chlorpyrifos-oxon of carboxylesterases in the earthworm Lumbricus terrestris

Energy Technology Data Exchange (ETDEWEB)

Sanchez-Hernandez, Juan C. [Laboratory of Ecotoxicology, Faculty of Environmental Science, University of Castilla-La Mancha, Avda. Carlos III, 45071 Toledo (Spain)], E-mail: juancarlos.sanchez@uclm.es; Wheelock, Craig E. [Division of Physiological Chemistry II, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE 171 77, Stockholm (Sweden)

2009-01-15

A laboratory-based study was conducted to determine the basal carboxylesterase (CbE) activity in different tissues of the earthworm Lumbricus terrestris, and its sensitivity to the organophosphate (OP) pesticide chlorpyrifos-oxon (CPx). Carboxylesterase activity was found in the pharynx, crop, gizzard, anterior intestine, wall muscle and reproductive tissues of L. terrestris, and multiple tissue-specific isozymes were observed by native gel electrophoresis. Esterase activity and sensitivity to CPx inhibition varied on a tissue- and substrate-specific basis, suggesting isoforms-specific selectivity to OP-mediated inhibition. Three practical issues are recommended for the use of earthworm CbE activity as a biomarker of pesticide exposure: (i) CbE should be measured using several routine substrates, (ii) it should be determined in selected tissues instead of whole organism homogenate, and (iii) earthworm CbE activity should be used in conjuncture with other common biomarkers (e.g., ChE) within a multibiomarker approach to assess field exposure of OPs, and potentially other agrochemicals. - The measurement of carboxylesterase inhibition in earthworm is a sensitive and complementary biomarker of pesticide exposure.

Tissue distribution, isozyme abundance and sensitivity to chlorpyrifos-oxon of carboxylesterases in the earthworm Lumbricus terrestris

International Nuclear Information System (INIS)

Sanchez-Hernandez, Juan C.; Wheelock, Craig E.

2009-01-01

A laboratory-based study was conducted to determine the basal carboxylesterase (CbE) activity in different tissues of the earthworm Lumbricus terrestris, and its sensitivity to the organophosphate (OP) pesticide chlorpyrifos-oxon (CPx). Carboxylesterase activity was found in the pharynx, crop, gizzard, anterior intestine, wall muscle and reproductive tissues of L. terrestris, and multiple tissue-specific isozymes were observed by native gel electrophoresis. Esterase activity and sensitivity to CPx inhibition varied on a tissue- and substrate-specific basis, suggesting isoforms-specific selectivity to OP-mediated inhibition. Three practical issues are recommended for the use of earthworm CbE activity as a biomarker of pesticide exposure: (i) CbE should be measured using several routine substrates, (ii) it should be determined in selected tissues instead of whole organism homogenate, and (iii) earthworm CbE activity should be used in conjuncture with other common biomarkers (e.g., ChE) within a multibiomarker approach to assess field exposure of OPs, and potentially other agrochemicals. - The measurement of carboxylesterase inhibition in earthworm is a sensitive and complementary biomarker of pesticide exposure

Inhibition, recovery and oxime-induced reactivation of muscle esterases following chlorpyrifos exposure in the earthworm Lumbricus terrestris

International Nuclear Information System (INIS)

Collange, B.; Wheelock, C.E.; Rault, M.; Mazzia, C.; Capowiez, Y.; Sanchez-Hernandez, J.C.

2010-01-01

Assessment of wildlife exposure to organophosphorus (OP) pesticides generally involves the measurement of cholinesterase (ChE) inhibition, and complementary biomarkers (or related endpoints) are rarely included. Herein, we investigated the time course inhibition and recovery of ChE and carboxylesterase (CE) activities in the earthworm Lumbricus terrestris exposed to chlorpyrifos, and the ability of oximes to reactivate the phosphorylated ChE activity. Results indicated that these esterase activities are a suitable multibiomarker scheme for monitoring OP exposure due to their high sensitivity to OP inhibition and slow recovery to full activity levels following pesticide exposure. Moreover, oximes reactivated the inhibited ChE activity of the earthworms exposed to 12 and 48 mg kg -1 chlorpyrifos during the first week following pesticide exposure. This methodology is useful for providing evidence for OP-mediated ChE inhibition in individuals with a short history of OP exposure (≤1 week); resulting a valuable approach for assessing multiple OP exposure episodes in the field. - Esterase inhibition combined with oxime reactivation methods is a suitable approach for monitoring organophosphate contamination

Inhibition, recovery and oxime-induced reactivation of muscle esterases following chlorpyrifos exposure in the earthworm Lumbricus terrestris

Energy Technology Data Exchange (ETDEWEB)

Collange, B. [Universite d' Avignon et des Pays de Vaucluse, UMR 406 Abeilles et Environnement, Site AGROPARC, F-84914, Avignon Cede 09 (France); Wheelock, C.E. [Division of Physiological Chemistry II, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE 171 77, Stockholm (Sweden); Rault, M.; Mazzia, C. [Universite d' Avignon et des Pays de Vaucluse, UMR 406 Abeilles et Environnement, Site AGROPARC, F-84914, Avignon Cede 09 (France); Capowiez, Y. [INRA, Unite PSH, Site AGROPARC, F-84914 Avignon Cedex 09 (France); Sanchez-Hernandez, J.C., E-mail: juancarlos.sanchez@uclm.e [Laboratory of Ecotoxicology, Faculty of Environmental Science, University of Castilla-La Mancha, Avda. Carlos III s/n, 45071, Toledo (Spain)

2010-06-15

Assessment of wildlife exposure to organophosphorus (OP) pesticides generally involves the measurement of cholinesterase (ChE) inhibition, and complementary biomarkers (or related endpoints) are rarely included. Herein, we investigated the time course inhibition and recovery of ChE and carboxylesterase (CE) activities in the earthworm Lumbricus terrestris exposed to chlorpyrifos, and the ability of oximes to reactivate the phosphorylated ChE activity. Results indicated that these esterase activities are a suitable multibiomarker scheme for monitoring OP exposure due to their high sensitivity to OP inhibition and slow recovery to full activity levels following pesticide exposure. Moreover, oximes reactivated the inhibited ChE activity of the earthworms exposed to 12 and 48 mg kg{sup -1} chlorpyrifos during the first week following pesticide exposure. This methodology is useful for providing evidence for OP-mediated ChE inhibition in individuals with a short history of OP exposure (<=1 week); resulting a valuable approach for assessing multiple OP exposure episodes in the field. - Esterase inhibition combined with oxime reactivation methods is a suitable approach for monitoring organophosphate contamination

Cu accumulation by Lumbricus rubellus as affected by total amount of Cu in soil, soil moisture and soil heterogeneity.

NARCIS (Netherlands)

Marinussen, M.P.J.C.; Zee, van der S.E.A.T.M.

1997-01-01

To investigate the effect of soil heterogeneity on accumulation of pollutants in a contaminated soil by earthworms, we performed experiments under laboratory conditions with soil from a Cu-contaminated site, followed by experiments under field conditions. The first experiments were set up as a

Effects of pentachlorophenol on survival of earthworms (Lumbricus terrestris) and phagocytosis by their immunoactive coelomocytes

Energy Technology Data Exchange (ETDEWEB)

Giggleman, M.A.; Fitzpatrick, L.C.; Goven, A.J. [Univ. of North Texas, Denton, TX (United States); Venables, B.J. [TRAC Labs., Denton, TX (United States)

1998-12-01

Earthworms, Lumbricus terrestris, exposed for 96 h to filter paper saturated with five nominal concentrations of pentachlorophenol, exhibited a 50% lethal concentration (LC50) of 25.0 {micro}g PCP/cm{sup 2} and corresponding whole worm body burden-based 50% lethal dose (LD50) of 877.7 {micro}g PCP/g dry mass. Linear regression modeling showed that worms increased body concentrations (BC = {micro}g PCP/g dry tissue mass) with increasing exposure concentrations (EC) according to BC = 113.5 + 29.5EC. Phagocytosis of yeast cells by immunoactive coelomocytes was suppressed only at body concentrations (863.3 {micro}g PCP/g dry mass) that approximated the calculated LD50 and overlapped those demonstrating lethality, indicating a sharp transition between sublethal and lethal toxicity. An exposure concentration of 15 {micro}g PCP/cm{sup 2} produced significant suppression of phagocytosis of yeast cells by immunoactive coelomocytes. However, the average measured body burden from this group approximated the estimated LD50, indicating a sharp toxic response slope. Exposure to 10 {micro}g PCP/cm{sup 2} with a corresponding body concentration of 501.3 {micro}g PCP/g dry mass did not affect phagocytosis. The importance of body burden data is emphasized.

Incorporation of microplastics from litter into burrows of Lumbricus terrestris.

Science.gov (United States)

Huerta Lwanga, Esperanza; Gertsen, Hennie; Gooren, Harm; Peters, Piet; Salánki, Tamás; van der Ploeg, Martine; Besseling, Ellen; Koelmans, Albert A; Geissen, Violette

2017-01-01

Pollution caused by plastic debris is an urgent environmental problem. Here, we assessed the effects of microplastics in the soil surface litter on the formation and characterization of burrows built by the anecic earthworm Lumbricus terrestris in soil and quantified the amount of microplastics that was transported and deposited in L. terrestris burrows. Worms were exposed to soil surface litter treatments containing microplastics (Low Density Polyethylene) for 2 weeks at concentrations of 0%, 7%, 28%, 45% and 60%. The latter representing environmentally realistic concentrations found in hot spot soil locations. There were significantly more burrows found when soil was exposed to the surface treatment composed of 7% microplastics than in all other treatments. The highest amount of organic matter in the walls of the burrows was observed after using the treatments containing 28 and 45% microplastics. The highest microplastic bioturbation efficiency ratio (total microplastics (mg) in burrow walls/initial total surface litter microplastics (mg)) was found using the concentration of 7% microplastics, where L. terrestris introduced 73.5% of the surface microplastics into the burrow walls. The highest burrow wall microplastic content per unit weight of soil (11.8 ± 4.8 g kg- 1 ) was found using a concentration of 60% microplastics. L. terrestris was responsible for size-selective downward transport when exposed to concentrations of 7, 28 and 45% microplastics in the surface litter, as the fraction ≤50 μm microplastics in burrow walls increased by 65% compared to this fraction in the original surface litter plastic. We conclude that the high biogenic incorporation rate of the small-fraction microplastics from surface litter into burrow walls causes a risk of leaching through preferential flow into groundwater bodies. Furthermore, this leaching may have implications for the subsequent availability of microplastics to terrestrial organisms or for the transport

Conditional and specific cell ablation in the marine annelid Platynereis dumerilii.

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Vinoth Babu Veedin-Rajan

Full Text Available The marine annelid Platynereis dumerilii has become a model system for evo-devo, neurobiology and marine biology. The functional assessment of its cell types, however, has so far been very limited. Here we report on the establishment of a generally applicable, cell type specific ablation technique to overcome this restriction. Using a transgenic strain expressing the bacterial enzyme nitroreductase (ntr under the control of the worm's r-opsin1 locus, we show that the demarcated photoreceptor cells can be specifically ablated by the addition of the prodrug metronidazole (mtz. TUNEL staining indicates that ntr expressing cells undergo apoptotic cell death. As we used a transgenic strain co-expressing ntr with enhanced green fluorescent protein (egfp coding sequence, we were able to validate the ablation of photoreceptors not only in fixed tissue, using r-opsin1 riboprobes, but also by monitoring eGFP+ cells in live animals. The specificity of the ablation was demonstrated by the normal presence of the eye pigment cells, as well as of neuronal markers expressed in other cells of the brain, such as phc2, tyrosine hydroxylase and brn1/2/4. Additional analyses of the position of DAPI stained nuclei, the brain's overall neuronal scaffold, as well as the positions and projections of serotonergic neurons further confirmed that mtz treatment did not induce general abnormalities in the worm's brain. As the prodrug is administered by adding it to the water, targeted ablation of specific cell types can be achieved throughout the life of the animal. We show that ablation conditions need to be adjusted to the size of the worms, likely due to differences in the penetration of the prodrug, and establish ablation conditions for worms containing 10 to 55 segments. Our results establish mtz/ntr mediated conditional cell ablation as a powerful functional tool in Platynereis.

Earthworm effects on the incorporation of litter C and N into soil organic matter in a sugar maple forest.

Science.gov (United States)

Fahey, Timothy J; Yavitt, Joseph B; Sherman, Ruth E; Maerz, John C; Groffman, Peter M; Fisk, Melany C; Bohlen, Patrick J

2013-07-01

To examine the mechanisms of earthworm effects on forest soil C and N, we double-labeled leaf litter with 13C and 15N, applied it to sugar maple forest plots with and without earthworms, and traced isotopes into soil pools. The experimental design included forest plots with different earthworm community composition (dominated by Lumbricus terrestris or L. rubellus). Soil carbon pools were 37% lower in earthworm-invaded plots largely because of the elimination of the forest floor horizons, and mineral soil C:N was lower in earthworm plots despite the mixing of high C:N organic matter into soil by earthworms. Litter disappearance over the first winter-spring was highest in the L. terrestris (T) plots, but during the warm season, rapid loss of litter was observed in both L. rubellus (R) and T plots. After two years, 22.0% +/- 5.4% of 13C released from litter was recovered in soil with no significant differences among plots. Total recovery of added 13C (decaying litter plus soil) was much higher in no-worm (NW) plots (61-68%) than in R and T plots (20-29%) as much of the litter remained in the former whereas it had disappeared in the latter. Much higher percentage recovery of 15N than 13C was observed, with significantly lower values for T than R and NW plots. Higher overwinter earthworm activity in T plots contributed to lower soil N recovery. In earthworm-invaded plots isotope enrichment was highest in macroaggregates and microaggregates whereas in NW plots silt plus clay fractions were most enriched. The net effect of litter mixing and priming of recalcitrant soil organic matter (SOM), stabilization of SOM in soil aggregates, and alteration of the soil microbial community by earthworm activity results in loss of SOM and lowering of the C:N ratio. We suggest that earthworm stoichiometry plays a fundamental role in regulating C and N dynamics of forest SOM.

Interactions of juvenile Lumbricus terrestris with adults and their burrow systems in a two-dimensional microcosm Interações de juvenis de Lumbricus terrestris com adultos e seus sistemas de galerias em um microcosmo bidimensional

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Niki Grigoropoulou

2009-08-01

Full Text Available The objective of this work was to evaluate interactions of Lumbricus terrestris juveniles with adults and with inherited burrow systems. An experiment was set up using a two dimensional Evans' boxes microcosm. Adult L. terrestris were added to 16 boxes (one individual per box and kept in darkness at 17ºC along with eight unoccupied boxes for two months. The adult L. terrestris were removed from eight randomly selected boxes, and L. terrestris juveniles were added (one juvenile per box, composing three treatments with eight replicates: 1, with an adult in an inherited burrow (ABJ; 2, alone in an inherited burrow (BJ; and 3, alone in a previously uninhabited box (J. The proportion of juveniles occupying adult burrows observed was significantly different in treatments ABJ (48% and BJ (75%. The mean mass of juveniles at experimental termination differed significantly among treatments and was greater in treatment J (4.04±0.39 g in comparison to the BJ (3.09±0.93 g and ABJ treatments (2.13±0.64 g. Results suggest a negative influence of both the presence of an adult and its burrow system on juvenile growth. Intraspecific competition partially explained this, but further investigation is required to examine how an inherited environment (i.e. burrow could negatively affect the growth of juveniles.O objetivo deste trabalho foi avaliar as interações de juvenis de Lumbricus terrestris com indivíduos adultos e com sistemas de galerias herdados. O experimento foi realizado usando microcosmos bidimensionais de Evans como unidades experimentais. Adultos de L. terrestris foram colocados em 16 unidades experimentais (um indivíduo por unidade e mantidos no escuro a 17ºC juntamente com oito unidades experimentais inabitadas, por dois meses. Os adultos foram removidos de oito unidades selecionadas aleatoriamente e juvenis foram adicionados a todas as unidades experimentais (um indivíduo por unidade, em três tratamentos, com oito repetições: 1, com um

Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris.

Science.gov (United States)

Brinza, Loredana; Schofield, Paul F; Hodson, Mark E; Weller, Sophie; Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D; Mosselmans, J Frederick W

2014-01-01

The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced.

Direct detection of a single evoked action potential with MRS in Lumbricus terrestris.

Science.gov (United States)

Poplawsky, Alexander J; Dingledine, Raymond; Hu, Xiaoping P

2012-01-01

Functional MRI (fMRI) measures neural activity indirectly by detecting the signal change associated with the hemodynamic response following brain activation. In order to alleviate the temporal and spatial specificity problems associated with fMRI, a number of attempts have been made to detect neural magnetic fields (NMFs) with MRI directly, but have thus far provided conflicting results. In this study, we used MR to detect axonal NMFs in the median giant fiber of the earthworm, Lumbricus terrestris, by examining the free induction decay (FID) with a sampling interval of 0.32 ms. The earthworm nerve cords were isolated from the vasculature and stimulated at the threshold of action potential generation. FIDs were acquired shortly after the stimulation, and simultaneous field potential recordings identified the presence or absence of single evoked action potentials. FIDs acquired when the stimulus did not evoke an action potential were summed as background. The phase of the background-subtracted FID exhibited a systematic change, with a peak phase difference of (-1.2 ± 0.3) × 10(-5) radians occurring at a time corresponding to the timing of the action potential. In addition, we calculated the possible changes in the FID magnitude and phase caused by a simulated action potential using a volume conductor model. The measured phase difference matched the theoretical prediction well in both amplitude and temporal characteristics. This study provides the first evidence for the direct detection of a magnetic field from an evoked action potential using MR. Copyright © 2011 John Wiley & Sons, Ltd.

Early-phase immunodetection of metallothionein and heat shock proteins in extruded earthworm coelomocytes after dermal exposure to metal ions

International Nuclear Information System (INIS)

Homa, Joanna; Olchawa, Ewa; Stuerzenbaum, Stephen R.; John Morgan, A.; Plytycz, Barbara

2005-01-01

This paper provides direct evidence that earthworm immune cells, coelomocytes, are exposed to bio-reactive quantities of metals within 3 days after dermal exposure, and that they respond by upregulating metallothionein (MT) and heat shock protein (HSP70, HSP72) expression. Indirect support for the hypothesis that coelomocytes are capable of trafficking metals was also obtained. Coelomocytes were expelled from adult individuals of Eisenia fetida after 3-day exposure either to metal ions (Zn, Cu, Pb, Cd) or to distilled water (controls) via filter papers. The number of coelomocytes was significantly decreased after Cu, Pb, or Cd treatment. Cytospin preparations of coelomocytes were subjected to immunoperoxidase staining with monoclonal antibodies against human heat shock proteins (HSP70 or HSP72), or rabbit polyclonal antibodies raised against metallothionein 2 (w-MT2) of Lumbricus rubellus. Applied antibodies detected the respective proteins of E. fetida and revealed that the expression of HSP70, HSP72 and w-MT2 proteins was either induced or significantly enhanced in coelomocytes from metal-exposed animals. In conclusion, stress protein expression in earthworm coelomocytes may be used as sensitive biomarkers of metal contaminations. Further experimentation is needed for quantitative analysis of kinetics of metal-induced stress protein expression in earthworm coelomocytes. - Metals upregulate stress response proteins in earthworm coelomocytes

Availability of polycyclic aromatic hydrocarbons to earthworms (Eisenia andrei, Oligochaeta) in field-polluted soils and soil-sediment mixtures.

Science.gov (United States)

Jager, Tjalling; Baerselman, Rob; Dijkman, Ellen; de Groot, Arthur C; Hogendoorn, Elbert A; de Jong, Ad; Kruitbosch, Jantien A W; Peijnenburg, Willie J G M

2003-04-01

The bioavailability of polycyclic aromatic hydrocarbons (PAHs) for earthworms (Eisenia andrei) was experimentally determined in seven field-polluted soils and 15 soil-sediment mixtures. The pore-water concentration of most PAHs was higher than predicted. However, most of the compound was associated with dissolved organic carbon (DOC) and not directly available for uptake by earthworms. The apparent sorption could be reasonably predicted on the basis of interactions with DOC; however, the biota-soil accumulation factors (BSAFs) for earthworms were up to two orders of magnitude lower than predicted by equilibrium partitioning. The large variability between sites was not fully explained by differences in sorption. Experimental results indicate that the pool of freely dissolved PAHs in the pore water became partially depleted because of uptake by the earthworms and that bioaccumulation is thus also influenced by the kinetics of PAH desorption and mass transport. A pilot study with Lumbricus rubellus showed that steady-state body residues were well correlated to E. andrei. Current results show that depositing dredge spoil on land may lead to increased bioavailability of the lower-molecular-weight PAHs. However, risk assessment can conservatively rely on equilibrium partitioning, but accurate prediction requires quantification of the kinetics of bioavailability.

Early-phase immunodetection of metallothionein and heat shock proteins in extruded earthworm coelomocytes after dermal exposure to metal ions

Energy Technology Data Exchange (ETDEWEB)

Homa, Joanna [Department of Evolutionary Immunobiology, Institute of Zoology, Jagiellonian University, R. Ingardena 6, PL 30-060 Cracow (Poland); Olchawa, Ewa [Department of Evolutionary Immunobiology, Institute of Zoology, Jagiellonian University, R. Ingardena 6, PL 30-060 Cracow (Poland); Stuerzenbaum, Stephen R. [Cardiff School of Biosciences, Cardiff University, PO Box 915, Cardiff Wales CF10 3TL (United Kingdom); John Morgan, A. [Cardiff School of Biosciences, Cardiff University, PO Box 915, Cardiff Wales CF10 3TL (United Kingdom); Plytycz, Barbara [Department of Evolutionary Immunobiology, Institute of Zoology, Jagiellonian University, R. Ingardena 6, PL 30-060 Cracow (Poland)]. E-mail: plyt@zuk.iz.uj.edu.pl

2005-05-01

This paper provides direct evidence that earthworm immune cells, coelomocytes, are exposed to bio-reactive quantities of metals within 3 days after dermal exposure, and that they respond by upregulating metallothionein (MT) and heat shock protein (HSP70, HSP72) expression. Indirect support for the hypothesis that coelomocytes are capable of trafficking metals was also obtained. Coelomocytes were expelled from adult individuals of Eisenia fetida after 3-day exposure either to metal ions (Zn, Cu, Pb, Cd) or to distilled water (controls) via filter papers. The number of coelomocytes was significantly decreased after Cu, Pb, or Cd treatment. Cytospin preparations of coelomocytes were subjected to immunoperoxidase staining with monoclonal antibodies against human heat shock proteins (HSP70 or HSP72), or rabbit polyclonal antibodies raised against metallothionein 2 (w-MT2) of Lumbricus rubellus. Applied antibodies detected the respective proteins of E. fetida and revealed that the expression of HSP70, HSP72 and w-MT2 proteins was either induced or significantly enhanced in coelomocytes from metal-exposed animals. In conclusion, stress protein expression in earthworm coelomocytes may be used as sensitive biomarkers of metal contaminations. Further experimentation is needed for quantitative analysis of kinetics of metal-induced stress protein expression in earthworm coelomocytes. - Metals upregulate stress response proteins in earthworm coelomocytes.

KUANTITAS ANAKAN KULTUR SEMUT RANGRANG, Oecophylla smaragdina, SECARA ARTIFISIAL DENGAN MENGGUNAKAN BEBERAPA JENIS PAKAN BERBEDA

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Lintang Dianing Ratri

2017-03-01

Full Text Available Oecophylla smaragdina or weaver ants is social insect that has an important role in the ecosystem. One of its main function is as a biological control agent in agriculture. The use of weaver ants in an effort to develop a biocontrol continues and increases, this has caused the significant decrease of the natural population of O. smaragdina. Therefore, the weaver ants rearing is needed to maintain its existence in natural habitat without excessive exploitation. The purpose of this study were to determine the effect of different types of feed i.e. snails, earthworms, and okara (tofu by-product in the production of weaver ants kroto; and to determine the different of treatments of feeds provided to the production quantity of weaver ants kroto. The experimental method used in this study with a completely randomized design. Treatment was given by different protein sources feeding i.e. snails (Pomacea canaliculata, earthworm (Lumbricus rubellus, and okara. Five replicates were appliead for each treatment. Earthworms fed ants produced highest number of kroto with total of 1,030 individuals and weight 87.4 gram in total. Snails fed ants produced 866 individuals and weight 73.1 gram. Okara fed ants produced 543 individuals and weight 45.9 gram.

The burrowing characteristics of three common earthworm species

International Nuclear Information System (INIS)

Francis, G.S.; Tabley, F.J.; Butler, R.C.; Fraser, P.M.

2001-01-01

The burrowing characteristics of 3 common earthworm species were studied using X-ray computed tomography (CT) scanning in large cylinders (24.1 cm diameter) packed with topsoil (0-25 cm) and subsoil (25-50 cm) to representative field bulk density values and sown with ryegrass. Replicated cylinders (n 3), kept under constant moisture and temperature conditions, were inoculated with mature species of Lumbricus rubellus, Aporrectodea caliginosa, or Octolasion cyaneum earthworms at rates similar to their population density in the field. A non-inoculated, unreplicated control was also included. The number, biomass, and activity of the 3 species were then examined. X-ray CT scanning of large-diameter soil cylinders offers an alternative method for obtaining information on the burrowing characteristics of earthworms (Jegou et al. 1999). As this method is non-destructive, repeat measurements can be made and the use of large cylinders minimises edge effects. The objectives of this study were to: (i) assess the burrowing characteristics of 3 earthworm species (under artificial conditions) through measurement of 2-D porosity using X-ray CT scanning, (ii) estimate the extent of burrow backfilling between sequential scans, and (iii) estimate the continuity of earthworm burrows with depth through hydraulic conductivity measurements. Copyright (2001) CSIRO Publishing

Animal-sediment interactions: the effect of ingestion and excretion by worms on mineralogy

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S. J. Needham

2004-01-01

Full Text Available By controlled experiments that simulate marine depositional environments, it is shown that accelerated weathering and clay mineral authigenesis occur during the combined process of ingestion, digestion and excretion of fine-grained sediment by two species of annelid worms. Previously characterized synthetic mud was created using finely ground, low-grade metamorphic slate (temperature approximately 300°C containing highly crystalline chlorite and muscovite. This was added to experiment and control tanks along with clean, wind-blown sand. Faecal casts were collected at regular intervals from the experimental tanks and, less frequently, from the control tanks. Over a period of many months the synthetic mud (slate proved to be unchanged in the control tanks, but was significantly different in faecal casts from the experimental tanks that contained the worms Arenicola marina and Lumbricus terrestris. Chlorite was preferentially destroyed during digestion in the gut of A. marina. Both chlorite and muscovite underwent XRD peak broadening with a skew developing towards higher lattice spacing, characteristic of smectite formation. A neoformed Fe-Mg-rich clay mineral (possibly berthierine and as-yet undefined clay minerals with very high d-spacing were detected in both A. marina and L. terrestris cast samples. We postulate that a combination of the low pH and bacteria-rich microenvironment in the guts of annelid worms may radically accelerate mineral dissolution and clay mineral precipitation processes during digestion. These results show that macrobiotic activity significantly accelerates weathering and mineral degradation as well as mineral authigenesis. The combined processes of sediment ingestion and digestion thus lead to early diagenetic growth of clay minerals in clastic sediments.

Distribution of heavy metals in Lumbricus terrestris, Aporrectodea longa and A. rosea measured by atomic absorption and X-ray fluorescence spectrometry

International Nuclear Information System (INIS)

Andersen, C.; Laursen, J.

1982-01-01

Distribution of Ca, Pb, Cd, Zn, Fe and Mn has been investigated in the earthworm species Lumbricus terrestris, Aporectodea longa and A. rosea by atomic absorption and X-ray fluorescence spectrometry measurements. The material of L. terrestris originated from the garden of the Royal Veterinary and Agricultural University in central Copenhagen. Material of the other two species was sampled in sewage sludge treated plots. It was found that lead and cadmium are accumulated in the gut wall and from here transferred to waste nodules (brown bodies). In L. terrestris more lead was transferred to waste nodules than cadmium. Also large amounts of zinc were accumulated in the gut wall. Analyses of L. terrestris calciferous glands showed that these take part in regulation and excretion of a number of heavy metals. Lead and cadmium content was low in the ventral nerve chord and seminal vesicles. A. longa with poorly developed calciferous glands seems to rely more on waste nodule formation in the ultimate immobilization of lead. (author)

Assessing ecotoxicity and uptake of metals and metalloids in relation to two different earthworm species (Eiseina hortensis and Lumbricus terrestris).

Science.gov (United States)

Leveque, Thibaut; Capowiez, Yvan; Schreck, Eva; Mazzia, Christophe; Auffan, Mélanie; Foucault, Yann; Austruy, Annabelle; Dumat, Camille

2013-08-01

Due to diffuse atmospheric fallouts of process particles enriched by metals and metalloids, polluted soils concern large areas at the global scale. Useful tools to assess ecotoxicity induced by these polluted soils are therefore needed. Earthworms are currently used as biotest, however the influence of specie and earthworm behaviour, soil characteristics are poorly highlighted. Our aim was therefore to assess the toxicity of various polluted soils with process particles enriches by metals and metalloids (Pb, Cd, Cu, Zn, As and Sb) collected from a lead recycling facility on two earthworm species belonging to different ecological types and thus likely to have contrasted behavioural responses (Eiseina hortensis and Lumbricus terrestris). The combination of behavioural factors measurements (cast production and biomass) and physico-chemical parameters such as metal absorption, bioaccumulation by earthworms and their localization in invertebrate tissues provided a valuable indication of pollutant bioavailability and ecotoxicity. Soil characteristics influenced ecotoxicity and metal uptake by earthworms, as well as their soil bioturbation. Copyright © 2013 Elsevier Ltd. All rights reserved.

Transcriptome analysis and SNP development can resolve population differentiation of Streblospio benedicti, a developmentally dimorphic marine annelid.

Directory of Open Access Journals (Sweden)

Christina Zakas

Full Text Available Next-generation sequencing technology is now frequently being used to develop genomic tools for non-model organisms, which are generally important for advancing studies of evolutionary ecology. One such species, the marine annelid Streblospio benedicti, is an ideal system to study the evolutionary consequences of larval life history mode because the species displays a rare offspring dimorphism termed poecilogony, where females can produce either many small offspring or a few large ones. To further develop S. benedicti as a model system for studies of life history evolution, we apply 454 sequencing to characterize the transcriptome for embryos, larvae, and juveniles of this species, for which no genomic resources are currently available. Here we performed a de novo alignment of 336,715 reads generated by a quarter GS-FLX (Roche 454 run, which produced 7,222 contigs. We developed a novel approach for evaluating the site frequency spectrum across the transcriptome to identify potential signatures of selection. We also developed 84 novel single nucleotide polymorphism (SNP markers for this species that are used to distinguish coastal populations of S. benedicti. We validated the SNPs by genotyping individuals of different developmental modes using the BeadXPress Golden Gate assay (Illumina. This allowed us to evaluate markers that may be associated with life-history mode.

Complementary striped expression patterns of NK homeobox genes during segment formation in the annelid Platynereis.

Science.gov (United States)

Saudemont, Alexandra; Dray, Nicolas; Hudry, Bruno; Le Gouar, Martine; Vervoort, Michel; Balavoine, Guillaume

2008-05-15

NK genes are related pan-metazoan homeobox genes. In the fruitfly, NK genes are clustered and involved in patterning various mesodermal derivatives during embryogenesis. It was therefore suggested that the NK cluster emerged in evolution as an ancestral mesodermal patterning cluster. To test this hypothesis, we cloned and analysed the expression patterns of the homologues of NK cluster genes Msx, NK4, NK3, Lbx, Tlx, NK1 and NK5 in the marine annelid Platynereis dumerilii, a representative of trochozoans, the third great branch of bilaterian animals alongside deuterostomes and ecdysozoans. We found that most of these genes are involved, as they are in the fly, in the specification of distinct mesodermal derivatives, notably subsets of muscle precursors. The expression of the homologue of NK4/tinman in the pulsatile dorsal vessel of Platynereis strongly supports the hypothesis that the vertebrate heart derived from a dorsal vessel relocated to a ventral position by D/V axis inversion in a chordate ancestor. Additionally and more surprisingly, NK4, Lbx, Msx, Tlx and NK1 orthologues are expressed in complementary sets of stripes in the ectoderm and/or mesoderm of forming segments, suggesting an involvement in the segment formation process. A potentially ancient role of the NK cluster genes in segment formation, unsuspected from vertebrate and fruitfly studies so far, now deserves to be investigated in other bilaterian species, especially non-insect arthropods and onychophorans.

Effects of organic pollution in the distribution of annelid communities in the Estero de Urías coastal lagoon, Mexico

Directory of Open Access Journals (Sweden)

Agustín Ferrando

2011-06-01

Full Text Available The Estero de Urías coastal lagoon is subjected to several anthropogenic activities and has been characterized since 1997 through the study of benthic fauna. We analyzed the spatial and temporal distribution of annelids and their relationships with environmental variables (depth, sediment temperature, grain size and organic matter in order to determine the current degree of perturbation. Density, species richness, diversity, dominance, biomass, and the application of classification and ordination techniques allowed us to distinguish 5 zones: 1 a non-perturbed zone at the mouth of the lagoon, 2 a slightly perturbed zone surrounded by mangroves and shrimp farms, 3 a temporarily perturbed zone close to the effluent of the thermoelectric plant, 4 a perturbed zone in front of the slaughterhouse and fish factory, and 5 a very perturbed zone subjected to sewage and industrial input. Only minor changes in granulometry and faunal composition were observed in comparison with previous data from the same area, suggesting that the lagoon is still perturbed due to the effect of anthropogenic activities.

The Effect of Earthworm (Lumbricus terrestris L.) Population Density and Soil Water Content Interactions on Nitrous Oxide Emissions from Agricultural Soils

International Nuclear Information System (INIS)

Evers, A.K.; Gordon, A.M.; Thevathasan, N.V.; Demers, T.A.

2010-01-01

Earthworms may have an influence on the production of N 2 O, a greenhouse gas, as a result of the ideal environment contained in their gut and casts for denitrifier bacteria. The objective of this study was to determine the relationship between earthworm (Lumbricus terrestris L.) population density, soil water content and N 2 O emissions in a controlled greenhouse experiment based on population densities (90 to 270 individuals m-2) found at the Guelph Agroforestry Research Station (GARS) from 1997 to 1998. An experiment conducted at considerably higher than normal densities of earthworms revealed a significant relationship between earthworm density, soil water content and N 2 O emissions, with mean emissions increasing to 43.5 g ha-1day-1 at 30 earthworms 0.0333 m-2 at 35% soil water content. However, a second experiment, based on the density of earthworms at GARS, found no significant difference in N 2 O emissions (5.49 to 6.99 g ha-1day-1) aa a result of density and 31% soil water content

Food-chain transfer of cadmium and zinc from contaminated Urtica dioica to Helix aspersa and Lumbricus terrestris.

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Sinnett, Danielle E; Hodson, Mark E; Hutchings, Tony R

2009-08-01

The present study examines the potential of Urtica dioica as an ecologically relevant species for use in ecotoxicological testing. It is prevalent in degraded ecosystems and is a food source for invertebrates. Urtica dioica grown in hydroponic solutions containing from less than 0.003 to 5.7 mg Cd/L or from 0.02 to 41.9 mg Zn/L accumulated metals resulting in leaf tissue concentrations in the range of 0.10 to 24.9 mg Cd/kg or 22.5 to 2,772.0 mg Zn/kg. No toxicological effects were apparent except at the highest concentrations tested, suggesting that this species may be an important pathway for transfer of metals to primary plant consumers. Helix aspersa and Lumbricus terrestris were fed the Cd- and Zn-rich leaves of U. dioica for six and four weeks, respectively. Cadmium and Zn body load increased with increasing metal concentration in the leaves (p nettle leaves with concentrations of approximately 23 mg Cd/kg and 3,400 mg Zn/kg. Models demonstrate that L. terrestris Cd tissue concentrations (r2 = 0.74, p < 0.001) and H. aspersa Zn tissue concentrations (r(2) = 0.69, p < 0.001) can be estimated from concentrations of Cd and Zn within the leaves of U. dioica and suggest that reasonably reproducible results can be obtained using these species for ecotoxicological testing.

The effect of earthworms (.i.Lumbricus rubellus./i.) and simulated tillage on soil organic carbon in a long-term microcosm experiment

Czech Academy of Sciences Publication Activity Database

Frouz, Jan; Špaldoňová, A.; Fričová, K.; Bartuška, M.

2014-01-01

Roč. 78, November (2014), s. 58-64 ISSN 0038-0717 Grant - others:GA ČR(CZ) GAP504/12/1288 Program:GA Institutional support: RVO:60077344 Keywords : carbon sequestration * earthworms * ergosterol * litter decomposition * microbial respiration * soil processes Subject RIV: DF - Soil Science Impact factor: 3.932, year: 2014

Transport of fallout radiocesium in the soil by bioturbation. A random walk model and application to a forest soil with a high abundance of earthworms

International Nuclear Information System (INIS)

Bunzl, K.

2002-01-01

It is well known that bioturbation can contribute significantly to the vertical transport of fallout radionuclides in grassland soils. To examine this effect also for a forest soil, activity-depth profiles of Chernobyl-derived 134Cs from a limed plot (soil, hapludalf under spruce) with a high abundance of earthworms (Lumbricus rubellus) in the Olu horizon (thickness=3.5 cm) were evaluated and compared with the corresponding depth profiles from an adjacent control plot. For this purpose, a random-walk based transport model was developed, which considers (1) the presence of an initial activity-depth distribution, (2) the deposition history of radiocesium at the soil surface, (3) individual diffusion/dispersion coefficients and convection rates for the different soil horizons, and (4) mixing by bioturbation within one soil horizon. With this model, the observed 134Cs-depth distribution at the control site (no bioturbation) and at the limed site could be simulated quite satisfactorily. It is shown that the observed, substantial long-term enrichment of 134Cs in the bioturbation horizon can be modeled by an exceptionally effective diffusion process, combined with a partial reflection of the randomly moving particles at the two borders of the bioturbation zone. The present model predicts significantly longer residence times of radiocesium in the organic soil layer of the forest soil than obtained from a first-order compartment model, which does not consider bioturbation explicitly

Mitigating N2O emissions from clover residues by 3,4-dimethylpyrazole phosphate (DMPP) without adverse effects on the earthworm Lumbricus terrestris

DEFF Research Database (Denmark)

Kong, Xianwang; Duan, YunFeng; Schramm, Andreas

2017-01-01

in a 28-d mesocosm experiment, where DMPP spraying prior to tillage was simulated. Above-ground parts of 15N-labelled clover residues were treated with DMPP and either placed at 10 cm depth to simulate ploughing (PL), or mixed with soil at 0–10 cm depth to simulate rotovation (RO). Earthworms (Lumbricus...... terrestris) were introduced to study their role in residue decomposition and N2O emissions. Fluxes and isotopic composition of N2O were determined with dynamic chambers using laser spectroscopy. A gradual increase in 15N-enrichment of N2O indicated that denitrification was the main source. DMPP reduced...... cumulative N2O emissions in PL from 241 to 146 mg N m−2; the reduction in RO was smaller, from 103 to 94 mg N m−2, and not significant, possibly due to higher oxygen and soil NO3− availability. After 28 d incubation, on average > 90% of the earthworms were recovered, and in vivo N2O production from L...

Avoidance behaviour response and esterase inhibition in the earthworm, Lumbricus terrestris, after exposure to chlorpyrifos.

Science.gov (United States)

Martínez Morcillo, S; Yela, J L; Capowiez, Y; Mazzia, C; Rault, M; Sanchez-Hernandez, Juan C

2013-05-01

The avoidance response of earthworms to polluted soils has been standardised using a simple and low-cost test, which facilitates soil toxicity screening. In this study, the avoidance response of Lumbricus terrestris was quantified in chlorpyrifos-spiked soils, depending on the pesticide concentration and exposure duration. The inhibition of acetylcholinesterase (AChE) and carboxylesterase (CbE) activities was also determined as indirect measures of pesticide bioavailability. The effects of different chlorpyrifos concentrations were examined in a standardised test (two-chamber system) with 0.6, 3 and 15 mg/kg chlorpyrifos. A modification of the test involved a pre-exposure step (24, 48 or 72 h) in soils spiked with 15 mg/kg. In both protocols, earthworms were unable to avoid the contaminated soils. However, the esterase activities showed that all earthworms were exposed to chlorpyrifos. Acetylcholinesterase activity did not change in earthworms in the standardised behavioural test (0.58 ± 0.20 U/mg protein, mean ± SD; n = 72), whereas the CbE activity was significantly inhibited (62-87 % inhibition) in earthworms exposed to 3 and 15 mg/kg. In the modified test, earthworms had greatly inhibited AChE activity (0.088 ± 0.034 U/mg protein, n = 72), which was supported by reactivation of the inhibited enzyme activity in the presence of pralidoxime (2-PAM). Similarly, the CbE activity was significantly inhibited in earthworms with all treatments. This study suggests that the avoidance behaviour test for organophosphorus-contaminated soils could be supported by specific biomarkers to facilitate a better understanding of pesticide exposure and toxicity during this test.

Polychaete Annelid (segmented worms) Species Composition in the Deep Gulf of Mexico following the Deep Water Horizon (DWH) Oil Spill

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QU, F.; Rowe, G.

2012-12-01

Sediments 5 to 9 km from the Deep Water Horizon (DWH) Oil Spill site were sampled using a 0.2 m2 box corer 5 months after the event to assess the effects of the oil spill on polychaete annelid (segmented worms) community structure. Numbers of species, abundance, and biodiversity indices were all significantly lower than pre-spill values from similar depths in the eastern Gulf of Mexico (GoM). All of the five dominant species were different. Non-selective deposit feeders and selective deposit feeders were still the most frequent feeding guilds, but their abundances decreased significantly after the event. A large number of carnivorous Sigalionidae may be a response to an accumulation of PAHs on the sediment. Multivariate analyses (CLUSTER and multidimensional scaling (MDS)) illustrate the differences between assemblages near the DWH and those from prior studies in similar deep GoM habitats. In sum, the polychaete populations appeared to be at an early stage of succession in the recovery from the spill or they could be a resident assemblage that is the natural characteristic infauna in or adjacent to natural seeps of fossil hydrocarbons.

Which way is up? Asymmetric spectral input along the dorsal-ventral axis influences postural responses in an amphibious annelid.

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Jellies, John

2014-11-01

Medicinal leeches are predatory annelids that exhibit countershading and reside in aquatic environments where light levels might be variable. They also leave the water and must contend with terrestrial environments. Yet, leeches generally maintain a dorsal upward position despite lacking statocysts. Leeches respond visually to both green and near-ultraviolet (UV) light. I used LEDs to test the hypothesis that ventral, but not dorsal UV would evoke compensatory movements to orient the body. Untethered leeches were tested using LEDs emitting at red (632 nm), green (513 nm), blue (455 nm) and UV (372 nm). UV light evoked responses in 100 % of trials and the leeches often rotated the ventral surface away from it. Visible light evoked no or modest responses (12-15 % of trials) and no body rotation. Electrophysiological recordings showed that ventral sensilla responded best to UV, dorsal sensilla to green. Additionally, a higher order interneuron that is engaged in a variety of parallel networks responded vigorously to UV presented ventrally, and both the visible and UV responses exhibited pronounced light adaptation. These results strongly support the suggestion that a dorsal light reflex in the leech uses spectral comparisons across the dorsal-ventral axis rather than, or in addition to, luminance.

Depuration and uptake kinetics of I, CS, MN, ZN and CD by the earthworm (lumbricus terrestris) in radiotracer-spiked litter

International Nuclear Information System (INIS)

Sheppard, S.C.; Evenden, W.G.; Cornwell, T.C.

1997-01-01

The relative depuration and uptake kinetics of contaminants should be known to interpret appropriately the use of organisms such as earthworms in environmental bioassays and monitoring. For example, 14-d earthworm bioassays should be interpreted with the knowledge that some contaminants will continue to accumulate in tissues for months. The radiotracers 125 I, 134 Cs, 54 Mn, 65 Zn, and 109 Cd were applied to deciduous litter and specimens of Lumbricus terrestris were exposed, either to litter alone or to litter on the top of soil columns. Depuration was monitored for 120 d and uptake, in a separate experiment, for 20 d. Both depuration and uptake were described using two-phase, first-order statistical models. Gut clearance had a mean half-time of 1.4 d. The mean half-time for physiological depuration decreased from I (210 d) > Cd (150 d) > Zn (69 d) > Mn (40 d) > Cs (24 d). Both the deputation and the uptake experiments were necessary to resolve even partially the multiphase processes. Earthworm/soil dry weight concentration ratios decreased from Cd > Zn > I ≥ Cs ≥ Mn. The very slow kinetics indicate that tissue concentrations will increase continuously for a long time, with important implications for subsequent food-chain transfers. (author)

Comparative toxicity in earthworms Eisenia fetida and Lumbricus terrestris exposed to cadmium nitrate using artificial soil and filter paper protocols

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Fitzpatrick, L.C.; Goven, A.J. [Univ. of North Texas, Denton, TX (United States); Muratti-Ortiz, J.F. [City of Denton Water/Wastewater Laboratory, TX (United States); Venables, B.J. [TRAC Laboratories Inc., Denton, TX (United States)

1996-07-01

Earthworms are ideal soil organisms for use in terrestrial ecotoxicology. As such, several earthworm protocols have been developed for testing toxic potential of chemicals and contaminated soils. Of these, the 48-h filter paper contact (FP) and the 14-d artificial soil exposure (AS) protocols, using mortality (LC50) as the toxic endpoint and Eisenia fetida as the test species, have received the most attention, with the latter being adopted by both OECD and EEC in Europe and the Environmental Protection Agency (USEPA) in the United States. Although the FP technique, adopted by EEC, provides for inexpensive reproducible toxicity screening for chemicals (i.e. establishing relative toxicities), it has been criticized for lacking the ecotoxicological relevance of the AS protocol. Choice of earthworm species for laboratory testing also has been controversial. The manure worm, E. fetida, is criticized for not being sufficiently sensitive to chemicals or representative of {open_quotes}typical{close_quotes} earthworms. Lumbricus terrestris and Apporectodea caliginosa have been suggested as more sensitive and ecologically relevant earthworms by Dean-Ross and Martin, respectively. This paper compares the AS and FP protocols in assessing toxicity of cadminum to L. terrestris and E. fetida using LC50s and LC50s. 19 refs., 2 tabs.

Differences in p,p'-DDE bioaccumulation from compost and soil by the plants Cucurbita pepo and Cucurbita maxima and the earthworms Eisenia fetida and Lumbricus terrestris.

Science.gov (United States)

Peters, Richard; Kelsey, Jason W; White, Jason C

2007-07-01

Two plant species, Cucurbita pepo and Cucurbita maxima, and two earthworm species, Eisenia fetida and Lumbricus terrestris, were exposed to soil and compost with equivalent p,p'-DDE contamination. Pollutant bioconcentration was equal in plant roots in both media, but translocation was higher in C. pepo. Bioaccumulation by E. fetida was approximately 6- and 3-fold higher than that by L. terrestris in the soil and compost, respectively. For all species, p,p'-DDE uptake was significantly greater from soil than from compost; 7- to 8-fold higher for plant roots and 3- to 7-fold higher for worms. Abiotic desorption from soil was approximately twice that from the compost. When all the data are normalized for organic-carbon content of the media, the contaminant is more tightly bound by soil than compost. Although the risk associated with p,p'-DDE is higher in soil than compost, important mechanistic differences exist in contaminant binding to organic carbon in the two media.

Journal of Biosciences | Indian Academy of Sciences

Indian Academy of Sciences (India)

We have calculated the most probable mass distributions for Lumbricus and Riftia assemblies and their globin and linker subassemblies, based on the Lumbricus Er stoichiometry and using accurate subunit masses obtained by electrospray ionization mass spectrometry. The expected masses of Lumbricus and Riftia Ers ...

The influence of earthworms on the mobility of microelements in soil and their availability for plants

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Bityutskii, N. P.; Kaidun, P. I.

2008-12-01

The influence of earthworms ( Aporrectodea caliginosa, Lumbricus rubellus, L. terrestris, and Eisenia fetida) on the mobility of microelements and their availability for plants was studied. The contents of water-soluble Fe and Mn compounds extracted from the coprolites were 5-10 times higher than that in the soil (enriched in calcium carbonate and dried) consumed by the earthworms. This digestion-induced effect became higher with the age of the coprolites (up to 9 days) and took place under their alkalization. In the excreta (surface + enteric) of earthworms, the Fe concentration exceeded those of Mn and Zn by many times. Iron and manganese were mostly concentrated (>80% and >60%, respectively) in the organic part of the excrements. In the tests with hydroponics, the excreta were found to be a source of iron compounds available for plants that were similar to Fe2(SO4)3 or Fe-citrate by their physiological effect in the case when the Fe concentration in the excretions was above 0.7 μM. However, the single application of excreta of different earthworm species into the CaCO3 enriched soil did not significantly affect the plant (cucumber) nutrition. The analysis of the transport of microelements with xylem sap showed that this fact appeared to be due to the absence of an Fe deficit in the cucumber plants because of their high capability for the absorption of weakly soluble iron compounds.

Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms.

Science.gov (United States)

Brown, David S; Jarman, Simon N; Symondson, William O C

2012-03-01

Little quantitative ecological information exists on the diets of most invertebrate feeding reptiles, particularly nocturnal or elusive species that are difficult to observe. In the UK and elsewhere, reptiles are legally required to be relocated before land development can proceed, but without knowledge of their dietary requirements, the suitability of receptor sites cannot be known. Here, we tested the ability of non-invasive DNA-based molecular diagnostics (454 pyrosequencing) to analyse reptile diets, with the specific aims of determining which earthworm species are exploited by slow worms (the legless lizard Anguis fragilis) and whether they feed on the deeper-living earthworm species that only come to the surface at night. Slow worm faecal samples from four different habitats were analysed using earthworm-specific PCR primers. We found that 86% of slow worms (N=80) had eaten earthworms. In lowland heath and marshy/acid grassland, Lumbricus rubellus, a surface-dwelling epigeic species, dominated slow worm diet. In two other habitats, riverside pasture and calciferous coarse grassland, diet was dominated by deeper-living anecic and endogeic species. We conclude that all species of earthworm are exploited by these reptiles and lack of specialization allows slow worms to thrive in a wide variety of habitats. Pyrosequencing of prey DNA in faeces showed promise as a practical, rapid and relatively inexpensive means of obtaining detailed and valuable ecological information on the diets of reptiles. © 2011 Blackwell Publishing Ltd.

Towards a more appropriate water based extraction for the assessment of organic contaminant availability

International Nuclear Information System (INIS)

Hickman, Zachary A.; Reid, Brian J.

2005-01-01

This study correlated extractabilities of 37 d aged phenanthrene residues in four dissimilar soils with the fraction that was available for earthworm (Lumbricus rubellus) accumulation and microorganism (Pseudomonas sp.) mineralisation. Extractability was determined using two established techniques, namely (1) a water based extraction using CO 2 equilibrated water and (2) an aqueous based hydroxypropyl-β-cyclodextrin (HPCD) extraction. Results showed no relationship between earthworm accumulation and phenanthrene extractability using either HPCD (r 2 =0.07; slope=-4.76; n=5) or the water based extraction (r 2 =0.31; slope=-5.34; n=5). Earthworm accumulation was overestimated by both techniques. In contrast, the fraction of phenanthrene extractable using both the HPCD technique and the water based extraction correlated strongly with microbial mineralisation. However, the slopes of these linear relationships were 0.48 (r 2 =0.96; n=10), and 0.99 (r 2 =0.88; n=10) for the water based extraction and HPCD, respectively. Thus, the HPCD extraction provided values that were numerically close to the mineralisation values, whilst the water based extraction values were approximately half the mineralisation values. It is submitted that HPCD extraction provided an appropriate method of assessing the fraction of contaminant available for microbial mineralisation in these dissimilar soils. - No significant difference was found between microbially mineralised phenanthrene and extractability using hydroxypropyl-β-cyclodextrin in four dissimilar soils; the water-only extraction removed half of this fraction

Earthworms drive succession of both plant and Collembola communities in post-mining sites

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Mudrák, Ondřej; Uteseny, Karoline; Frouz, Jan

2016-04-01

Previous field observations indicated that earthworms promote late-successional plant species and reduce collembolan numbers at post-mining sites in the Sokolov coal mining district (Czech Republic). Here, we established a laboratory pot experiment to test the effect of earthworms (Aporrectodea caliginosa Savigny and Lumbricus rubellus Hoffm.) and litter of low, medium, and high quality (the grass Calamagrostis epigejos, the willow Salix caprea, and the alder Alnus glutinosa, respectively) on late successional plants (grasses Arrhenatherum elatius and Agrostis capillaris, legumes Lotus corniculatus and Trifolium medium, and non-leguminous dicots Centaurea jacea and Plantago lanceolata) in spoil substrate originating from Sokolov post-mining sites and naturally inhabited by abundant numbers of Collembola. The earthworms increased plant biomass, especially that of the large-seeded A. elatius, but reduced the number of plant individuals, mainly that of the small-seeded A. capillaris and both legumes. Litter quality affected plant biomass, which was highest with S. caprea litter, but did not change the number of plant individuals. Litter quality did not modify the effect of earthworms on plants; the effect of litter quality and earthworms was only additive. Species composition of Collembola community was altered by litter quality, but earthworms reduced the number of individuals, increased the number of species, and increased species evenness consistently across the litter qualities. Because the results of this experiment were consistent with the field observations, we conclude that earthworms help drive succession of both plant and Collembola communities on post-mining sites.

Long-term efficiency of soil stabilization with apatite and Slovakite: the impact of two earthworm species (Lumbricus terrestris and Dendrobaena veneta) on lead bioaccessibility and soil functioning.

Science.gov (United States)

Tica, D; Udovic, M; Lestan, D

2013-03-01

Remediation soil is exposed to various environmental factors over time that can affect the final success of the operation. In the present study, we assessed Pb bioaccessibility and microbial activity in industrially polluted soil (Arnoldstein, Austria) stabilized with 5% (w/w) of Slovakite and 5% (w/w) of apatite soil after exposure to two earthworm species, Lumbricus terrestris and Dendrobaena veneta, used as model environmental biotic soil factors. Stabilization resulted in reduced Pb bioaccessibility, as assessed with one-step extraction tests and six-step sequential extraction, and improved soil functioning, mirrored in reduced β-glucosidase activity in soil. Both earthworm species increased Pb bioaccessibility, thus decreasing the initial stabilization efficacy and indicating the importance of considering the long-term fate of remediated soil. The earthworm species had different effects on soil enzyme activity, which can be attributed to species-specific microbial populations in earthworm gut acting on the ingested soil. Copyright © 2012 Elsevier Ltd. All rights reserved.

Assessing ecotoxicity and uptake of metals and metalloids in relation to two different earthworm species (Eiseina hortensis and Lumbricus terrestris)

International Nuclear Information System (INIS)

Leveque, Thibaut; Capowiez, Yvan; Schreck, Eva; Mazzia, Christophe; Auffan, Mélanie; Foucault, Yann; Austruy, Annabelle; Dumat, Camille

2013-01-01

Due to diffuse atmospheric fallouts of process particles enriched by metals and metalloids, polluted soils concern large areas at the global scale. Useful tools to assess ecotoxicity induced by these polluted soils are therefore needed. Earthworms are currently used as biotest, however the influence of specie and earthworm behaviour, soil characteristics are poorly highlighted. Our aim was therefore to assess the toxicity of various polluted soils with process particles enriches by metals and metalloids (Pb, Cd, Cu, Zn, As and Sb) collected from a lead recycling facility on two earthworm species belonging to different ecological types and thus likely to have contrasted behavioural responses (Eiseina hortensis and Lumbricus terrestris). The combination of behavioural factors measurements (cast production and biomass) and physico-chemical parameters such as metal absorption, bioaccumulation by earthworms and their localization in invertebrate tissues provided a valuable indication of pollutant bioavailability and ecotoxicity. Soil characteristics influenced ecotoxicity and metal uptake by earthworms, as well as their soil bioturbation. -- Highlights: •Historically polluted soils collected from a lead recycling facility were studied. •Cast production is a sensitive parameter to assess ecotoxicity on earthworms. •Both soil parameters, like organic matter content and pH and earthworm specie influence metal uptake and ecotoxicity. -- Behavioural factors and inorganic pollutant uptake by earthworms provide a valuable indication of bioavailability and ecotoxicity

Tri-domain Bifunctional Inhibitor of Metallocarboxypeptidases A and Serine Proteases Isolated from Marine Annelid Sabellastarte magnifica*

Science.gov (United States)

Alonso-del-Rivero, Maday; Trejo, Sebastian A.; Reytor, Mey L.; Rodriguez-de-la-Vega, Monica; Delfin, Julieta; Diaz, Joaquin; González-González, Yamile; Canals, Francesc; Chavez, Maria Angeles; Aviles, Francesc X.

2012-01-01

This study describes a novel bifunctional metallocarboxypeptidase and serine protease inhibitor (SmCI) isolated from the tentacle crown of the annelid Sabellastarte magnifica. SmCI is a 165-residue glycoprotein with a molecular mass of 19.69 kDa (mass spectrometry) and 18 cysteine residues forming nine disulfide bonds. Its cDNA was cloned and sequenced by RT-PCR and nested PCR using degenerated oligonucleotides. Employing this information along with data derived from automatic Edman degradation of peptide fragments, the SmCI sequence was fully characterized, indicating the presence of three bovine pancreatic trypsin inhibitor/Kunitz domains and its high homology with other Kunitz serine protease inhibitors. Enzyme kinetics and structural analyses revealed SmCI to be an inhibitor of human and bovine pancreatic metallocarboxypeptidases of the A-type (but not B-type), with nanomolar Ki values. SmCI is also capable of inhibiting bovine pancreatic trypsin, chymotrypsin, and porcine pancreatic elastase in varying measures. When the inhibitor and its nonglycosylated form (SmCI N23A mutant) were overproduced recombinantly in a Pichia pastoris system, they displayed the dual inhibitory properties of the natural form. Similarly, two bi-domain forms of the inhibitor (recombinant rSmCI D1-D2 and rSmCI D2-D3) as well as its C-terminal domain (rSmCI-D3) were also overproduced. Of these fragments, only the rSmCI D1-D2 bi-domain retained inhibition of metallocarboxypeptidase A but only partially, indicating that the whole tri-domain structure is required for such capability in full. SmCI is the first proteinaceous inhibitor of metallocarboxypeptidases able to act as well on another mechanistic class of proteases (serine-type) and is the first of this kind identified in nature. PMID:22411994

Differences in p,p'-DDE bioaccumulation from compost and soil by the plants Cucurbita pepo and Cucurbita maxima and the earthworms Eisenia fetida and Lumbricus terrestris

International Nuclear Information System (INIS)

Peters, Richard; Kelsey, Jason W.; White, Jason C.

2007-01-01

Two plant species, Cucurbita pepo and Cucurbita maxima, and two earthworm species, Eisenia fetida and Lumbricus terrestris, were exposed to soil and compost with equivalent p,p'-DDE contamination. Pollutant bioconcentration was equal in plant roots in both media, but translocation was higher in C. pepo. Bioaccumulation by E. fetida was approximately 6- and 3-fold higher than that by L. terrestris in the soil and compost, respectively. For all species, p,p'-DDE uptake was significantly greater from soil than from compost; 7- to 8-fold higher for plant roots and 3- to 7-fold higher for worms. Abiotic desorption from soil was approximately twice that from the compost. When all the data are normalized for organic-carbon content of the media, the contaminant is more tightly bound by soil than compost. Although the risk associated with p,p'-DDE is higher in soil than compost, important mechanistic differences exist in contaminant binding to organic carbon in the two media. - Availability of p,p'-DDE to earthworms and plants was dramatically different in soil and compost

Differences in p,p'-DDE bioaccumulation from compost and soil by the plants Cucurbita pepo and Cucurbita maxima and the earthworms Eisenia fetida and Lumbricus terrestris

Energy Technology Data Exchange (ETDEWEB)

Peters, Richard [Program in Environmental Science and Department of Chemistry, Muhlenberg College, 2400 Chew Street, Allentown, PA 18104 (United States)]. E-mail: rp232604@muhlenberg.edu; Kelsey, Jason W. [Program in Environmental Science and Department of Chemistry, Muhlenberg College, 2400 Chew Street, Allentown, PA 18104 (United States)]. E-mail: kelsey@muhlenberg.edu; White, Jason C. [Department of Soil and Water, The Connecticut Agricultural Experiment Station, 123 Huntington Street, New Haven, CT 06504 (United States)]. E-mail: jason.white@po.state.ct.us

2007-07-15

Two plant species, Cucurbita pepo and Cucurbita maxima, and two earthworm species, Eisenia fetida and Lumbricus terrestris, were exposed to soil and compost with equivalent p,p'-DDE contamination. Pollutant bioconcentration was equal in plant roots in both media, but translocation was higher in C. pepo. Bioaccumulation by E. fetida was approximately 6- and 3-fold higher than that by L. terrestris in the soil and compost, respectively. For all species, p,p'-DDE uptake was significantly greater from soil than from compost; 7- to 8-fold higher for plant roots and 3- to 7-fold higher for worms. Abiotic desorption from soil was approximately twice that from the compost. When all the data are normalized for organic-carbon content of the media, the contaminant is more tightly bound by soil than compost. Although the risk associated with p,p'-DDE is higher in soil than compost, important mechanistic differences exist in contaminant binding to organic carbon in the two media. - Availability of p,p'-DDE to earthworms and plants was dramatically different in soil and compost.

Accumulated metal speciation in earthworm populations with multigenerational exposure to metalliferous soils: cell fractionation and high-energy synchrotron analyses.

Science.gov (United States)

Andre, Jane; Charnock, John; Stürzenbaum, Stephen R; Kille, Peter; Morgan, A John; Hodson, Mark E

2009-09-01

Predicting metal bioaccumulation and toxicity in soil organisms is complicated by site-specific biotic and abiotic parameters. In this study we exploited tissue fractionation and digestion techniques, combined with X-ray absorption spectroscopy (XAS), to investigate the whole-body and subcellular distributions, ligand affinities, and coordination chemistry of accumulated Pb and Zn in field populations of the epigeic earthworm Lumbricus rubellus inhabiting three contrasting metalliferous and two unpolluted soils. Our main findings were (i) earthworms were resident in soils with concentrations of Pb and Zn ranging from 1200 to 27,000 mg kg(-1) and 200 to 34,000 mg kg(-1), respectively; (ii) Pb and Zn primarily accumulated in the posterior alimentary canal in nonsoluble subcellular fractions of earthworms; (iii) site-specific differences in the tissue and subcellular partitioning profiles of populations were observed, with earthworms from a calcareous site partitioning proportionally more Pb to their anterior body segments and Zn to the chloragosome-rich subcellular fraction than their acidic-soil inhabiting counterparts; (iv) XAS indicated that the interpopulation differences in metal partitioning between organs were not accompanied by qualitative differences in ligand-binding speciation, because crystalline phosphate-containing pyromorphite was a predominant chemical species in the whole-worm tissues of all mine soil residents. Differences in metal (Pb, Zn) partitioning at both organ and cellular levels displayed by field populations with protracted histories of metal exposures may reflect theirinnate ecophysiological responses to essential edaphic variables, such as Ca2+ status. These observations are highly significant in the challenging exercise of interpreting holistic biomarker data delivered by "omic" technologies.

Chemical Composition of Vermicompost Made from Organic Wastes through the Vermicomposting and Composting with the Addition of Fish Meal and Egg Shells Flour

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Nurhidayati

2017-05-01

Full Text Available Chemical composition of compost is an important indicator that determines the quality of compost. This study compared the chemical composition of vermicompost resulting from the process of vermicomposting alone with combined vermicomposting and composting with addition of egg shells flour and fish meal. Organic wastes used were the mixture of spent mushrooms waste, coconut husks, cow dung, vegetables residue, and leaf litter. Lumbricus rubellus was the species of earthworm used in the vermicomposting process. In the composting process, egg shells flour and fish meal are added into the vermicompost as additives materials. The results indicate that the combined vermicomposting and composting process with addition the additives materials improves the chemical composition of vermicompost compared to using vermicomposting process alone. The change of chemical composition was indicated by a decrease in C-organic content and C/N ratio by 29% and 99%, respectively, while the content of N, P, K and S increased by 52%, 67.5%, 29% and 25%, respectively due to the addition of additives material in the composting process. The largest increase of vermicompost nutrient content occurred in the Ca content by an average of up to 7-fold. While polyphenols, lignin and cellulose content of vermicompost decreased slightly. The treatment of two mixture (a spent mushrooms waste, cow dung and vegetables residue, and (b spent mushroom waste, cow dung, vegetables residue, and leaf litter gave the best chemical composition. However, to determine the quality, we need to test the product in a plant growth bioassay as a follow-up study.

Radiocobalt cycling in a small mammal food web

International Nuclear Information System (INIS)

Willard, W.K.

1975-01-01

Cobalt-60 seeping from a nearby radioactive liquid waste trench on the Oak Ridge reservation into a temperate deciduous forest ecosystem provided a source of environmental contamination where its dispersion through a small mammal food web could be studied. Maximum radiocobalt concentrations in the soil were found in the upper 5 cm of 15 cm cores. Transient mammals such as the opossum and the raccoon had small amounts of 60 Co in their tissues (0.5 and 1.0 pCi/gm, respectively), while the permanent mammal residents including the short-tailed shrew (80 pCi/g), white-footed mouse (50 pCi/g), golden mouse (50 pCi/g) and the eastern chipmunk (20 pCi/g) had from 27 to more than 100 times that of the transient mammals. The persistent occurrence of 60 Co in the small mammals tissues indicated its importance in the food web. Of the potential mammalian food items present in the area, only earthworms (Lumbricus rubellus) contained high levels of 60 Co activity (greater than 56 nCi/gm dry wt.). Earthworms collected from the seepage channel eliminated 70 percent of their body burden (gut contents) of 60 Co during the first 24-hour period, but retained the remaining 30 percent (tissue accumulation) for more than 11 weeks. Tissue retention by earthworms and the utilization of numerous burrows by mammals along the seepage channel during the summer months suggested that earthworms constituted a major link in the small mammal food chain. (U.S.)

{sup 32}P-postlabeling determination of DNA adducts in the earthworm Lumbricus terrestris exposed to PAH-contaminated soils

Energy Technology Data Exchange (ETDEWEB)

Walsh, P. [Laval Univ. Research Center, Quebec (Canada)]|[Ministere de l`Environnement et de la Faune du Quebec (Canada); El Adlouni, C.; Mukhopadhyay, M.J.; Nadeau, D.; Poirier, G.G. [Laval Univ. Research Center, Quebec (Canada); Viel, G. [CreaLab., Quebec (Canada)

1995-05-01

The importance of the search for reliable biomarkers of DNA damage in environmental health assessment is well recognized by the scientific community and regulatory agencies. Among the major biomarkers of DNA damage is the measurement of DNA adducts in target cells or tissues. Up to now, DNA adduct determinations have been directed mostly toward human exposure to toxic substances from the workplace and environment. Moreover, techniques for measuring DNA adducts, and in particular the {sup 32}P-postlabelling technique, presented also the possibility of determining DNA adduct levels in endogenous animal populations exposed to polluted environments as early warning monitors of ecotoxicity. Soil contamination is becoming a major environmental issue. Therefore, numerous contaminated sites must now be remediated to protect human health and to permit new uses of these sites as agricultural, residential, or industrial areas. Fulfillment of this task requires standardized and sensitive bioassays to carry out site evaluations and to establish scientifically defensible soil quality criteria. To that effect, the earthworm appears to be one of the best organisms for use in soil toxicity evaluation. Earthworms are probably the most relevant soil species, representing 60 to 80% of the total animal biomass in soil. Present soil bioassays focus mostly on plant species with end points like seed germination, root elongation, seedling growth and seedling emergence, and on acute toxicity evaluation (re: LC 50) on the earthworm Eisenia fetida. As yet, a standardized soil invertebrate test for teratogenic or mutagenic end points has not been developed. In this paper, we report the feasibility of DNA adduct determination by {sup 32}P-postlabelling in the earthworm Lumbricus terrestris as a way to detect the presence of genotoxic substances in soils. 20 refs., 1 fig., 1 tab.

Low resolution crystal structure of Arenicola erythrocruorin: influence of coiled coils on the architecture of a megadalton respiratory protein.

Science.gov (United States)

Royer, William E; Omartian, Michael N; Knapp, James E

2007-01-05

Annelid erythrocruorins are extracellular respiratory complexes assembled from 180 subunits into hexagonal bilayers. Cryo-electron microscopic experiments have identified two different architectural classes. In one, designated type I, the vertices of the two hexagonal layers are partially staggered, with one hexagonal layer rotated by about 16 degrees relative to the other layer, whereas in the other class, termed type II, the vertices are essentially eclipsed. We report here the first crystal structure of a type II erythrocruorin, that from Arenicola marina, at 6.2 A resolution. The structure reveals the presence of long continuous triple-stranded coiled-coil "spokes" projecting towards the molecular center from each one-twelfth unit; interdigitation of these spokes provides the only contacts between the two hexagonal layers of the complex. This arrangement contrasts with that of a type I erythrocruorin from Lumbricus terrestris in which the spokes are broken into two triple-stranded coiled coils with a disjointed connection. The disjointed connection allows formation of a more compact structure in the type I architecture, with the two hexagonal layers closer together and additional extensive contacts between the layers. Comparison of sequences of the coiled-coil regions of various linker subunits shows that the linker subunits from type II erythrocruorins possess continuous heptad repeats, whereas a sequence gap places these repeats out of register in the type I linker subunits, consistent with a disjointed coiled-coil arrangement.

The effects of polycyclic aromatic hydrocarbons and heavy metals on terrestrial annelids in urban soils O efeito de hidrocarbonetos aromáticos policíclicos e metais pesados em anelídeos terrestres de solos urbanos

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Pižl Václav

2009-08-01

Full Text Available The effect of soil contamination by polycyclic aromatic hydrocarbons (PAH and heavy metals on earthworms and enchytraeids was studied in urban parks, in Brno, Czech Republic. In spring and autumn 2007, annelids were collected and soil samples taken in lawns along transects, at three different distances (1, 5 and 30 m from streets with heavy traffic. In both seasons, two parks with two transects each were sampled. Earthworms were collected using the electrical octet method. Enchytraeids were extracted by the wet funnel method from soil cores. All collected annelids were counted and identified. Basic chemical parameters and concentrations of 16 PAH, Cd, Cu, Pb, and Zn were analysed from soil from each sampling point. PAH concentrations were rather low, decreasing with the distance from the street in spring but not in autumn. Heavy metal concentrations did not decrease significantly with increasing distance. Annelid densities did not significantly differ between distances, although there was a trend of increase in the number of earthworms with increasing distance. There were no significant correlations between soil content of PAH or heavy metals and earthworm or enchytraeid densities. Earthworm density and biomass were negatively correlated with soil pH; and enchytraeid density was positively correlated with soil phosphorus.O efeito da contaminação do solo por hidrocarbonetos aromáticos policíclicos (PAH e metais pesados em minhocas e enquitreídeos foi estudado em parques urbanos, em Brno, República Tcheca. Na primavera e outono de 2007, os anelídeos foram coletados, e amostras de solo foram retiradas de gramados ao longo de transectos, em três diferentes distâncias (1, 5 e 30 m de ruas com muito tráfego. Nas duas estações, foram amostrados dois parques com dois transectos cada um. As minhocas com uso do método do octeto elétrico, e os enquitreídeos foram extraídos das amostras de solo pelo método do funil úmido. Todos os anel

A revision of the genus Kaszabister Mazur (Histeridae, Histerinae, Exosternini

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Nicolas Degallier

2012-06-01

Full Text Available We revise the four species of Kaszabister Mazur, 1972, one of which, Kaszabister barrigai sp. n., is described as new. The other species in the genus are K. rubellus (Erichson, 1834, K. ferrugineus (Kirsch, 1873 and K. carinatus (Lewis, 1888. The species are principally known from the subtropics of South America, with one in Central America. Lectotypes are designated for K. rubellus and K. ferrugineus, and a key is provided for all the species. Ants of the genus Solenopsis Westwood, mainly S. invicta Buren and S. saevissima (Smith, are documented as hosts of three of the four species.

An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals

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Chen Wei-Chung

2009-09-01

Full Text Available Abstract Background Since the drastic reorganisation of the phylogeny of the animal kingdom into three major clades of bilaterians; Ecdysozoa, Lophotrochozoa and Deuterostomia, it became glaringly obvious that the selection of model systems with extensive molecular resources was heavily biased towards only two of these three clades, namely the Ecdysozoa and Deuterostomia. Increasing efforts have been put towards redressing this imbalance in recent years, and one of the principal phyla in the vanguard of this endeavour is the Annelida. Results In the context of this effort we here report our characterisation of an Expressed Sequence Tag (EST screen in the serpulid annelid, Pomatoceros lamarckii. We have sequenced over 5,000 ESTs which consolidate into over 2,000 sequences (clusters and singletons. These sequences are used to build phylogenetic trees to estimate relative branch lengths amongst different taxa and, by comparison to genomic data from other animals, patterns of gene retention and loss are deduced. Conclusion The molecular phylogenetic trees including the P. lamarckii sequences extend early observations that polychaetes tend to have relatively short branches in such trees, and hence are useful taxa with which to reconstruct gene family evolution. Also, with the availability of lophotrochozoan data such as that of P. lamarckii, it is now possible to make much more accurate reconstructions of the gene complement of the ancestor of the bilaterians than was previously possible from comparisons of ecdysozoan and deuterostome genomes to non-bilaterian outgroups. It is clear that the traditional molecular model systems for protostomes (e.g. Drosophila melanogaster and Caenorhabditis elegans, which are restricted to the Ecdysozoa, have undergone extensive gene loss during evolution. These ecdysozoan systems, in terms of gene content, are thus more derived from the bilaterian ancestral condition than lophotrochozoan systems like the polychaetes

Six3

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Steinmetz Patrick RH

2010-12-01

Full Text Available Abstract Background The heads of annelids (earthworms, polychaetes, and others and arthropods (insects, myriapods, spiders, and others and the arthropod-related onychophorans (velvet worms show similar brain architecture and for this reason have long been considered homologous. However, this view is challenged by the 'new phylogeny' placing arthropods and annelids into distinct superphyla, Ecdysozoa and Lophotrochozoa, together with many other phyla lacking elaborate heads or brains. To compare the organisation of annelid and arthropod heads and brains at the molecular level, we investigated head regionalisation genes in various groups. Regionalisation genes subdivide developing animals into molecular regions and can be used to align head regions between remote animal phyla. Results We find that in the marine annelid Platynereis dumerilii, expression of the homeobox gene six3 defines the apical region of the larval body, peripherally overlapping the equatorial otx+ expression. The six3+ and otx+ regions thus define the developing head in anterior-to-posterior sequence. In another annelid, the earthworm Pristina, as well as in the onychophoran Euperipatoides, the centipede Strigamia and the insects Tribolium and Drosophila, a six3/optix+ region likewise demarcates the tip of the developing animal, followed by a more posterior otx/otd+ region. Identification of six3+ head neuroectoderm in Drosophila reveals that this region gives rise to median neurosecretory brain parts, as is also the case in annelids. In insects, onychophorans and Platynereis, the otx+ region instead harbours the eye anlagen, which thus occupy a more posterior position. Conclusions These observations indicate that the annelid, onychophoran and arthropod head develops from a conserved anterior-posterior sequence of six3+ and otx+ regions. The six3+ anterior pole of the arthropod head and brain accordingly lies in an anterior-median embryonic region and, in consequence, the optic

Animal evolution: stiff or squishy notochord origins?

Science.gov (United States)

Hejnol, Andreas; Lowe, Christopher J

2014-12-01

The notochord is considered an evolutionary novelty and one of the defining characters of chordates. A new study of an annelid challenges this view and proposes an earlier evolutionary origin in the most recent common ancestor of chordates and annelids. Copyright © 2014 Elsevier Ltd. All rights reserved.

Ecological transfer of radionuclides and metals to free-living earthworm species in natural habitats rich in NORM.

Science.gov (United States)

Mrdakovic Popic, Jelena; Salbu, Brit; Skipperud, Lindis

2012-01-01

Transfer of radionuclides ((232)Th and (238)U) and associated metals (As, Cd, Pb and Cr) from soil to free-living earthworm species was investigated in a thorium ((232)Th) rich area in Norway. Sampling took place within former mining sites representing the technologically enhanced naturally occurring radioactive materials (TENORM), at undisturbed site with unique bedrock geology representing the naturally occurring radioactive materials (NORM) and at site outside the (232)Th rich area taken as reference Background site. Soil analysis revealed the elevated levels of investigated elements at NORM and TENORM sites. Based on sequential extraction, uranium ((238)U) and cadmium (Cd) were quite mobile, while the other elements were strongly associated with mineral components of soil. Four investigated earthworm species (Aporrectodea caliginosa, Aporrectodea rosea, Dendrodrilus rubidus and Lumbricus rubellus) showed large individual variability in the accumulation of radionuclides and metals. Differences in uptake by epigeic and endogeic species, as well as differences within same species from the NORM, TENORM and Background sites were also seen. Based on total concentrations in soil, the transfer factors (TF) were in ranges 0.03-0.08 and 0.09-0.25, for (232)Th and (238)U, respectively. TFs for lead (Pb), chromium (Cr) and arsenic (As) were low (less than 0.5), while TFs for Cd were higher (about 10). Using the ERICA tool, the estimated radiation exposure dose rate of the earthworms ranged from 2.2 to 3.9 μGy/h. The radiological risk for investigated earthworms was low (0.28). The obtained results demonstrated that free-living earthworm species can survive in soil containing elevated (232)Th and (238)U, as well As, Cd, Pb and Cr levels, although certain amount of radionuclides was accumulated within their bodies. The present investigation contributes to general better understanding of complex soil-to-biota transfer processes of radionuclides and metals and to assessment

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins

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Mizuguchi Kenji

2008-09-01

Full Text Available Abstract Background Hemerythrins, are the non-heme, diiron binding respiratory proteins of brachiopods, priapulids and sipunculans; they are also found in annelids and bacteria, where their functions have not been fully elucidated. Results A search for putative Hrs in the genomes of 43 archaea, 444 bacteria and 135 eukaryotes, revealed their presence in 3 archaea, 118 bacteria, several fungi, one apicomplexan, a heterolobosan, a cnidarian and several annelids. About a fourth of the Hr sequences were identified as N- or C-terminal domains of chimeric, chemotactic gene regulators. The function of the remaining single domain bacterial Hrs remains to be determined. In addition to oxygen transport, the possible functions in annelids have been proposed to include cadmium-binding, antibacterial action and immunoprotection. A Bayesian phylogenetic tree revealed a split into two clades, one encompassing archaea, bacteria and fungi, and the other comprising the remaining eukaryotes. The annelid and sipunculan Hrs share the same intron-exon structure, different from that of the cnidarian Hr. Conclusion The phylogenomic profile of Hrs demonstrated a limited occurrence in bacteria and archaea and a marked absence in the vast majority of multicellular organisms. Among the metazoa, Hrs have survived in a cnidarian and in a few protostome groups; hence, it appears that in metazoans the Hr gene was lost in deuterostome ancestor(s after the radiata/bilateria split. Signal peptide sequences in several Hirudinea Hrs suggest for the first time, the possibility of extracellular localization. Since the α-helical bundle is likely to have been among the earliest protein folds, Hrs represent an ancient family of iron-binding proteins, whose primary function in bacteria may have been that of an oxygen sensor, enabling aerophilic or aerophobic responses. Although Hrs evolved to function as O2 transporters in brachiopods, priapulids and sipunculans, their function in

Modelling spatiotemporal distribution patterns of earthworms in order to indicate hydrological soil processes

Science.gov (United States)

Palm, Juliane; Klaus, Julian; van Schaik, Loes; Zehe, Erwin; Schröder, Boris

2010-05-01

Soils provide central ecosystem functions in recycling nutrients, detoxifying harmful chemicals as well as regulating microclimate and local hydrological processes. The internal regulation of these functions and therefore the development of healthy and fertile soils mainly depend on the functional diversity of plants and animals. Soil organisms drive essential processes such as litter decomposition, nutrient cycling, water dynamics, and soil structure formation. Disturbances by different soil management practices (e.g., soil tillage, fertilization, pesticide application) affect the distribution and abundance of soil organisms and hence influence regulating processes. The strong relationship between environmental conditions and soil organisms gives us the opportunity to link spatiotemporal distribution patterns of indicator species with the potential provision of essential soil processes on different scales. Earthworms are key organisms for soil function and affect, among other things, water dynamics and solute transport in soils. Through their burrowing activity, earthworms increase the number of macropores by building semi-permanent burrow systems. In the unsaturated zone, earthworm burrows act as preferential flow pathways and affect water infiltration, surface-, subsurface- and matrix flow as well as the transport of water and solutes into deeper soil layers. Thereby different ecological earthworm types have different importance. Deep burrowing anecic earthworm species (e.g., Lumbricus terrestris) affect the vertical flow and thus increase the risk of potential contamination of ground water with agrochemicals. In contrast, horizontal burrowing endogeic (e.g., Aporrectodea caliginosa) and epigeic species (e.g., Lumbricus rubellus) increase water conductivity and the diffuse distribution of water and solutes in the upper soil layers. The question which processes are more relevant is pivotal for soil management and risk assessment. Thus, finding relevant

Interrelationships between soil biota and soil physical properties in forest areas of the Pieniny National Park (Poland)

Science.gov (United States)

Józefowska, Agnieszka; Zaleski, Tomasz; Sokołowska, Justyna; Dzierwa, Agata

2017-04-01

The study area was located in the Pieniny National Park (PNP) in the Carpathian Mountain (Southern Poland). Investigated soil belonged to Eutric Cambisols and had silt or silt loam texture. The purpose of this research was to investigated relationship between soil biota, such as microbial activity, soil Oligochaeta (Lumbricidae and Enchytraeidae) and soil physical properties, such as water retention or aggregates stability. This research was conducted at six forest monitoring areas of the PNP. Sampling was collected in the September 2016. For each of the 6 places, undisturbed and disturbed soil samples were taken from the 0-15-cm and 15-30-cm layer in 3 to 5 replicates. Undisturbed soil was taken: i) into Kopecky cylinders to determined soil physical properties; ii) a soil cores to determined enchytraeids and fine roots biomass (RB). Disturbed soil was collected in 3 reps and homogenized. Next such soil samples were divided into three parts: i) fresh one to determined dehydrogenase activity (ADh), microbial carbon biomass (MC) and labile carbon (LC); ii) air-dried, passed through a sieve (2-mm mesh size) and used for analysis: pH, organic carbon and bulk density; iii) last part air dried was used to determined stability of different size aggregates. In field, earthworms were collected in 3 reps using hand sorting method. Investigated soils were strongly acidic to neutral (pH 4.8-6.8). Organic carbon (Corg) content was varied from 0.8% to 4.5% and was higher in 0-15-cm layers than in 15-30-cm layers. Higher Corgcontent was connected with lower bulk density. Enchytraeids density was ranged from 1807 ind. m-2 to 88855 ind. m-2 and was correlated with microbial activity (ADh and MB) and RB. Earthworms density (ED) was ranged from 7 ind. m-2to 507 ind. m-2. In investigated soil was 6 genus and 7 species (Octolasion lacteum, Aporrectodea caliginosa, Aporrectodea rosea, Aporrectodea jassyensis, Lumbricus rubellus, Eisenia lucens, and Fitzingeria platyura depressa). ED was

Molecular identification of differentially regulated genes in the hydrothermal-vent species Bathymodiolus thermophilus and Paralvinella pandorae in response to temperature

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Shillito Bruce

2009-05-01

Full Text Available Abstract Background Hydrothermal vents and cold seeps represent oases of life in the deep-sea environment, but are also characterized by challenging physical and chemical conditions. The effect of temperature fluctuations on vent organisms in their habitat has not been well explored, in particular at a molecular level, most gene expression studies being conducted on coastal marine species. In order to better understand the response of hydrothermal organisms to different temperature regimes, differentially expressed genes (obtained by a subtractive suppression hybridization approach were identified in the mussel Bathymodiolus thermophilus and the annelid Paralvinella pandorae irlandei to characterize the physiological processes involved when animals are subjected to long term exposure (2 days at two contrasting temperatures (10° versus 20°C, while maintained at in situ pressures. To avoid a potential effect of pressure, the experimental animals were initially thermally acclimated for 24 hours in a pressurized vessel. Results For each species, we produced two subtractive cDNA libraries (forward and reverse from sets of deep-sea mussels and annelids exposed together to a thermal challenge under pressure. RNA extracted from the gills, adductor muscle, mantle and foot tissue were used for B. thermophilus. For the annelid model, whole animals (small individuals were used. For each of the four libraries, we sequenced 200 clones, resulting in 78 and 83 unique sequences in mussels and annelids (about 20% of the sequencing effort, respectively, with only half of them corresponding to known genes. Real-time PCR was used to validate differentially expressed genes identified in the corresponding libraries. Strong expression variations have been observed for some specific genes such as the intracellular hemoglobin, the nidogen protein, and Rab7 in P. pandorae, and the SPARC protein, cyclophilin, foot protein and adhesive plaque protein in B. thermophilus

Soil enzyme dynamics in chlorpyrifos-treated soils under the influence of earthworms.

Science.gov (United States)

Sanchez-Hernandez, Juan C; Notario Del Pino, J; Capowiez, Yvan; Mazzia, Christophe; Rault, Magali

2018-01-15

Earthworms contribute, directly and indirectly, to contaminant biodegradation. However, most of bioremediation studies using these annelids focus on pollutant dissipation, thus disregarding the health status of the organism implied in bioremediation as well as the recovery of indicators of soil quality. A microcosm study was performed using Lumbricus terrestris to determine whether earthworm density (2 or 4individuals/kg wet soil) and the time of exposure (1, 2, 6, 12, and 18wk) could affect chlorpyrifos persistence in soil initially treated with 20mg active ingredientkg -1 wet soil. Additionally, selected earthworm biomarkers and soil enzyme activities were measured as indicators of earthworm health and soil quality, respectively. After an 18-wk incubation period, no earthworm was killed by the pesticide, but clear signs of severe intoxication were detected, i.e., 90% inhibition in muscle acetylcholinesterase and carboxylesterase (CbE) activities. Unexpectedly, the earthworm density had no significant impact on chlorpyrifos dissipation rate, for which the measured half-life ranged between 30.3d (control soils) and 44.5d (low earthworm density) or 36.7d (high earthworm density). The dynamic response of several soil enzymes to chlorpyrifos exposure was examined calculating the geometric mean and the treated-soil quality index, which are common enzyme-based indexes of microbial functional diversity. Both indexes showed a significant and linear increase of the global enzyme response after 6wk of chlorpyrifos treatment in the presence of earthworms. Examination of individual enzymes revealed that soil CbE activity could decrease chlorpyrifos-oxon impact upon the rest of enzyme activities. Although L. terrestris was found not to accelerate chlorpyrifos dissipation, a significant increase in the activity of soil enzyme activities was achieved compared with earthworm-free, chlorpyrifos-treated soils. Therefore, the inoculation of organophosphorus-contaminated soils with L

Evolution of cave Axiokebuita and Speleobregma (Scalibregmatidae, Annelida)

DEFF Research Database (Denmark)

Martinez Garcia, Alejandro; Di Domenico, Maikon; Worsaae, Katrine

2013-01-01

The evolutionary history of Axiokebuita and Speleobregma, two poorly known lineages of annelids exclusive from deep-sea or marine caves but always from crevicular habitats, is explored here. Speleobregma lanzaroteum Bertelsen, 1986, and Axiokebuita cavernicola sp. n. are described from anchialine...... ciliated palps. Our results support two independent cave colonization events, favoured by the preadaptation of the members of Axiokebuita-Speleobregma lineage to crevicular habitats.......The evolutionary history of Axiokebuita and Speleobregma, two poorly known lineages of annelids exclusive from deep-sea or marine caves but always from crevicular habitats, is explored here. Speleobregma lanzaroteum Bertelsen, 1986, and Axiokebuita cavernicola sp. n. are described from anchialine...

Effects of earthworms on nitrogen mineralization.

NARCIS (Netherlands)

Willems, J.J.G.M.; Marinissen, J.C.Y.; Blair, J.

1996-01-01

The influence of earthworms (Lumbricus terrestris and Aporrectodea tuberculata) on the rate of net N mineralization was studied, both in soil with intact soil structure (partly influenced by past earthworm activity) and in columns with sieved soil

Earthworm functional traits and interspecific interactions affect plant nitrogen acquisition and primary production

NARCIS (Netherlands)

Andriuzzi, Walter; Schmidt, Olaf; Brussaard, L.; Faber, J.H.; Bolger, T.

2016-01-01

We performed a greenhouse experiment to test how the functional diversity of earthworms, the dominant group of soil macro-invertebrates in many terrestrial ecosystems, affects nitrogen cycling and plant growth. Three species were chosen to represent a range of functional traits: Lumbricus terrestris

Organic matter composition and the protist and nematode communities around anecic earthworm burrows

NARCIS (Netherlands)

Andriuzzi, Walter S.; Ngo, Phuong-Thi; Geisen, Stefan; Keith, Aidan M.; Dumack, Kenneth; Bolger, Thomas; Bonkowski, Michael; Brussaard, Lijbert; Faber, Jack H.; Chabbi, Abad; Rumpel, Cornelia; Schmidt, Olaf

2016-01-01

By living in permanent burrows and incorporating organic detritus from the soil surface, anecic earthworms contribute to soil heterogeneity, but their impact is still under-studied in natural field conditions. We investigated the effects of the anecic earthworm Lumbricus centralis on fresh carbon

The Anthelmintic Activity of Vernonia amygdalina (Asteraceae) and ...

African Journals Online (AJOL)

Intestinal worms affect a host of individuals resulting in malnutrition, stunted growth, intellectual retardation and cognitive deficits. The aim of this study is to investigate the antihelminthic activity of Alstonia boonei De Wild (Apocynaceae) and Vernonia amygdalina (Asteraceae) using earth-worms (Lumbricus terretris).

Author Details

African Journals Online (AJOL)

Kwiri, Willy Cornelius. Vol 14, No 1 (2016) - Articles Domesticating Ugandan local earthworms: Survival of African nightcrawler Eudrillus eugeniae and common earthworm Lumbricus terrestris under different feeding rates in culture systems. Abstract. ISSN: 0002-0036. AJOL African Journals Online. HOW TO USE AJOL.

Diversity and host specificity of the Verminephrobacter–earthworm symbiosis

DEFF Research Database (Denmark)

Lund, Marie Braad; Davidson, Seana; Holmstrup, Martin

2010-01-01

Symbiotic bacteria of the genus Verminephrobacter (Betaproteobacteria) were detected in the nephridia of 19 out of 23 investigated earthworm species (Oligochaeta: Lumbricidae) by 16S rRNA gene sequence analysis and fluorescence in situ hybridization (FISH). While all four Lumbricus species and th...

Live feed culture - Problems and perspectives

Digital Repository Service at National Institute of Oceanography (India)

Royan, J.P.

The importance of live feed in aquaculture is stressed. Organisms currently cultured as live feed are microalgae, turbellarians, tanaidaceans, annelids, brine shrimps, fairy shrimps, rotifers, cladocerans and copepods. Their culture methods...

The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation

KAUST Repository

Handberg-Thorsager, Mette

2018-02-22

Retinoic acid (RA) is an important intercellular signaling molecule in vertebrate development, with a well-established role in the regulation of hox genes during hindbrain patterning and in neurogenesis. However, the evolutionary origin of the RA signaling pathway remains elusive. To elucidate the evolution of the RA signaling system, we characterized RA metabolism and signaling in the marine annelid Platynereis dumerilii, a powerful model for evolution, development, and neurobiology. Binding assays and crystal structure analyses show that the annelid retinoic acid receptor (RAR) binds RA and activates transcription just as vertebrate RARs, yet with a different ligand-binding pocket and lower binding affinity, suggesting a permissive rather than instructive role of RA signaling. RAR knockdown and RA treatment of swimming annelid larvae further reveal that the RA signal is locally received in the medial neuroectoderm, where it controls neurogenesis and axon outgrowth, whereas the spatial colinear hox gene expression in the neuroectoderm remains unaffected. These findings suggest that one early role of the new RAR in bilaterian evolution was to control the spatially restricted onset of motor and interneuron differentiation in the developing ventral nerve cord and to indicate that the regulation of hox-controlled anterior-posterior patterning arose only at the base of the chordates, concomitant with a high-affinity RAR needed for the interpretation of a complex RA gradient.

The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation

Science.gov (United States)

Handberg-Thorsager, Mette; Gutierrez-Mazariegos, Juliana; Arold, Stefan T.; Kumar Nadendla, Eswar; Bertucci, Paola Y.; Germain, Pierre; Tomançak, Pavel; Pierzchalski, Keely; Jones, Jace W.; Albalat, Ricard; Kane, Maureen A.; Bourguet, William; Laudet, Vincent; Arendt, Detlev; Schubert, Michael

2018-01-01

Retinoic acid (RA) is an important intercellular signaling molecule in vertebrate development, with a well-established role in the regulation of hox genes during hindbrain patterning and in neurogenesis. However, the evolutionary origin of the RA signaling pathway remains elusive. To elucidate the evolution of the RA signaling system, we characterized RA metabolism and signaling in the marine annelid Platynereis dumerilii, a powerful model for evolution, development, and neurobiology. Binding assays and crystal structure analyses show that the annelid retinoic acid receptor (RAR) binds RA and activates transcription just as vertebrate RARs, yet with a different ligand-binding pocket and lower binding affinity, suggesting a permissive rather than instructive role of RA signaling. RAR knockdown and RA treatment of swimming annelid larvae further reveal that the RA signal is locally received in the medial neuroectoderm, where it controls neurogenesis and axon outgrowth, whereas the spatial colinear hox gene expression in the neuroectoderm remains unaffected. These findings suggest that one early role of the new RAR in bilaterian evolution was to control the spatially restricted onset of motor and interneuron differentiation in the developing ventral nerve cord and to indicate that the regulation of hox-controlled anterior-posterior patterning arose only at the base of the chordates, concomitant with a high-affinity RAR needed for the interpretation of a complex RA gradient. PMID:29492455

Ecological transfer of radionuclides and metals to free-living earthworm species in natural habitats rich in NORM

Energy Technology Data Exchange (ETDEWEB)

Mrdakovic Popic, Jelena, E-mail: jelena.mrdakovic.popic@umb.no; Salbu, Brit; Skipperud, Lindis

2012-01-01

Transfer of radionuclides ({sup 232}Th and {sup 238}U) and associated metals (As, Cd, Pb and Cr) from soil to free-living earthworm species was investigated in a thorium ({sup 232}Th) rich area in Norway. Sampling took place within former mining sites representing the technologically enhanced naturally occurring radioactive materials (TENORM), at undisturbed site with unique bedrock geology representing the naturally occurring radioactive materials (NORM) and at site outside the {sup 232}Th rich area taken as reference Background site. Soil analysis revealed the elevated levels of investigated elements at NORM and TENORM sites. Based on sequential extraction, uranium ({sup 238}U) and cadmium (Cd) were quite mobile, while the other elements were strongly associated with mineral components of soil. Four investigated earthworm species (Aporrectodea caliginosa, Aporrectodea rosea, Dendrodrilus rubidus and Lumbricus rubellus) showed large individual variability in the accumulation of radionuclides and metals. Differences in uptake by epigeic and endogeic species, as well as differences within same species from the NORM, TENORM and Background sites were also seen. Based on total concentrations in soil, the transfer factors (TF) were in ranges 0.03-0.08 and 0.09-0.25, for {sup 232}Th and {sup 238}U, respectively. TFs for lead (Pb), chromium (Cr) and arsenic (As) were low (less than 0.5), while TFs for Cd were higher (about 10). Using the ERICA tool, the estimated radiation exposure dose rate of the earthworms ranged from 2.2 to 3.9 {mu}Gy/h. The radiological risk for investigated earthworms was low (0.28). The obtained results demonstrated that free-living earthworm species can survive in soil containing elevated {sup 232}Th and {sup 238}U, as well As, Cd, Pb and Cr levels, although certain amount of radionuclides was accumulated within their bodies. The present investigation contributes to general better understanding of complex soil-to-biota transfer processes of

Wetlands Research Program. Evaluation of Methods for Sampling Vegetation and Delineating Wetlands Transition Zones in Southern Louisiana, January 1979-May 1981.

Science.gov (United States)

1983-10-01

were the dominant herbaceous species. However, during an early summer reconnais- sance, pickerelweed, water hyacinth ( Eichornia crassipes ), and various...9 ’I.𔃾- . Calculated Species Adaptation Numbers for Herbaceous Species Species SANw* SANu** SANc t Eichornia crassipes 10.00 1.11 9.00 Daubentonia...Water gum B, C2, B2, Cl, A2 ryx aquatica ( iam f.) Nuttall Water hickry A2, 32 4 rubellus Mbench. Water horehotnd A2, C, B2 crassipes (Martius) Solms

Earthworm cast production as a new behavioural biomarker for toxicity testing

Energy Technology Data Exchange (ETDEWEB)

Capowiez, Yvan, E-mail: capowiez@avignon.inra.f [INRA, UR1115 ' Plantes et Systemes Horticoles' , Domaine Saint Paul, 84914 Avignon Cedex 09 (France); Dittbrenner, Nils [INRA, UR1115 ' Plantes et Systemes Horticoles' , Domaine Saint Paul, 84914 Avignon Cedex 09 (France); Animal Physiological Ecology, University of Tuebingen, Konrad-Adenauer-Str. 20, D-72072 Tuebingen (Germany); Rault, Magali [UAPV, UMR406 ' Abeilles et Environnement' , Domaine Saint Paul, 84914 Avignon Cedex 09 (France); Triebskorn, Rita [Animal Physiological Ecology, University of Tuebingen, Konrad-Adenauer-Str. 20, D-72072 Tuebingen (Germany); Hedde, Mickael [INRA, UR251 ' PESSAC' , RD10, 78026 Versailles Cedex (France); Mazzia, Christophe [UAPV, UMR406 ' Abeilles et Environnement' , Domaine Saint Paul, 84914 Avignon Cedex 09 (France)

2010-02-15

There is currently a lack of ecotoxicity tests adapted to earthworm species of higher ecological relevance and whose endpoints could be directly related to their ecological role in the soil. We propose a new and relatively simple ecotoxicity test based on the estimation of cast production (CP) by Lumbricus terrestris under laboratory conditions. CP was found to be linearly correlated to earthworm biomass and to be greatly influenced by soil water content. Azinphos-methyl had no effect on CP at all the concentrations tested. Significant decreases were observed at the normal application rate for other pesticides with (imidacloprid, carbaryl, methomyl) or without (ethyl-parathion and chlorpyrifos-ethyl) a clear concentration-effect response. For the highest concentration tested, reduction in CP varied between 35 and 67%. CP is straightforward and rapidly measured and ecologically meaningful. We thus believe it to be of great use as an endpoint in ecotoxicity testing. - Cast production of Lumbricus terrestris is affected by pesticides under laboratory conditions.

Earthworm cast production as a new behavioural biomarker for toxicity testing

International Nuclear Information System (INIS)

Capowiez, Yvan; Dittbrenner, Nils; Rault, Magali; Triebskorn, Rita; Hedde, Mickael; Mazzia, Christophe

2010-01-01

There is currently a lack of ecotoxicity tests adapted to earthworm species of higher ecological relevance and whose endpoints could be directly related to their ecological role in the soil. We propose a new and relatively simple ecotoxicity test based on the estimation of cast production (CP) by Lumbricus terrestris under laboratory conditions. CP was found to be linearly correlated to earthworm biomass and to be greatly influenced by soil water content. Azinphos-methyl had no effect on CP at all the concentrations tested. Significant decreases were observed at the normal application rate for other pesticides with (imidacloprid, carbaryl, methomyl) or without (ethyl-parathion and chlorpyrifos-ethyl) a clear concentration-effect response. For the highest concentration tested, reduction in CP varied between 35 and 67%. CP is straightforward and rapidly measured and ecologically meaningful. We thus believe it to be of great use as an endpoint in ecotoxicity testing. - Cast production of Lumbricus terrestris is affected by pesticides under laboratory conditions.

Fluoride concentrations in soils, vegetation samples and soil fauna in the direct vicinity of a pollution source

International Nuclear Information System (INIS)

Vogel, J.; Ottow, J.C.G.; Breimer, R.F.

1989-01-01

Fluoride analyses CF t = total F; F w = water soluble F and F HCI HCI-extractable F) of different soils, vegetation samples and soil fauna (Helix pomatia, Lumbricus spp., arthropodes) in a locally polluted area (for nearly 65 years) clearly revealed an F-accumulation in top soil, vegetation and animals. Based on 1N HCI-extractable fluoride, two contamination zones around the emitting industry could be identified. In the calcareous soils, leaching of fluoride seems to be insignificant because of a strong immobilization as CaF 2 . A highly significant correlation between the F HCI content of soils and Lumbricus spp. (with and without gut content) or Helix pomatia shells was found. Fluoride concentrations in washed leaves of Hedera helix and in decaying grass reached levels of 306 and 997 μgF/g respectively. Saprophagous soil arthropods contained high fluoride levels, up to 732 μgF/g in Armadillidium vulgare. (orig.)

Riboflavin content in autofluorescent earthworm coelomocytes is species-specific.

Directory of Open Access Journals (Sweden)

Joanna Homa

2007-01-01

Full Text Available We have recently shown that a large proproportion of earthworm coelomocytes exhibit strong autofluorescence in some species (Dendrobaena veneta, Allolobophora chlorotica, Dendrodrilus rubidus, Eisenia fetida, and Octolasion spp., while autofluorescent coelomocytes are very scarce in representatives of Lumbricus spp. and Aporrectodea spp. Riboflavin (vitamin B2 was identified as a major fluorophore in Eisenia jetida coelomocytes. The main aim of the present experiments was to quantify riboflavin content in autofluorescent coelomocytes (eleocytes from several earthworm species through a combination of flow cytometric and spectrofluorometric measurements. Spectrofluorometry of coelomocyte lysates showed that riboflavin was non-detectable in the coelomocytes of Aporrectodea spp. and Lumbricus spp., but was a prominent constituent of lysates from species with autofluorescent eleocytes. In the latter case, riboflavin content was the highest in E. fetida, followed by Octolasion spp. > A. chlorotica > D. rubidus. The riboflavin content of coelomocytes correlates positively with eleocyte autofluorescence intensity measured by flow cytometry and visible with fluorescence microscopy.

The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation

KAUST Repository

Handberg-Thorsager, Mette; Gutierrez-Mazariegos, Juliana; Arold, Stefan T.; Kumar Nadendla, Eswar; Bertucci, Paola Y.; Germain, Pierre; Tomanç ak, Pavel; Pierzchalski, Keely; Jones, Jace W.; Albalat, Ricard; Kane, Maureen A.; Bourguet, William; Laudet, Vincent; Arendt, Detlev; Schubert, Michael

2018-01-01

instructive role of RA signaling. RAR knockdown and RA treatment of swimming annelid larvae further reveal that the RA signal is locally received in the medial neuroectoderm, where it controls neurogenesis and axon outgrowth, whereas the spatial colinear hox

CHRONIC EFFECTS OF THE HERBICIDE DIURON ON FRESHWATER CLADOCERANS,AMPHIPODS,MIDGES,MINNOWS,WORMS, AND SNAILS

Science.gov (United States)

The chronic effects of the herbicide diuron on survival and reproduction of Daphnia pulex, and survival and growth of the amphipod Hyalella azteca, the midge Chironomus tentans, juvenile and embro/larval fathead minnows, Pimephales promelas, annelid worms, Lumbriculus variegatus,...

Enchytraeids and earthworms (Annelida: Clitellata: Enchytraeidae, Lumbricidae) of parks in the city of Brno, Czech Republic

Czech Academy of Sciences Publication Activity Database

Schlaghamerský, J.; Pižl, Václav

2009-01-01

Roč. 81, č. 2 (2009), s. 145-173 ISSN 1864-6417 R&D Projects: GA AV ČR IAA600660608 Institutional research plan: CEZ:AV0Z60660521 Keywords : annelids * soil * urban ecology Subject RIV: EH - Ecology, Behaviour

Cellular and muscular growth patterns during sipunculan development

DEFF Research Database (Denmark)

Kristof, Alen; Wollesen, Tim; Maiorova, Anastassya S

2011-01-01

Sipuncula is a lophotrochozoan taxon with annelid affinities, albeit lacking segmentation of the adult body. Here, we present data on cell proliferation and myogenesis during development of three sipunculan species, Phascolosoma agassizii, Thysanocardia nigra, and Themiste pyroides. The first anl...

Phylogeny and systematics of Protodrilidae (Annelida) inferred with total evidence analyses

DEFF Research Database (Denmark)

Martinez Garcia, Alejandro; Di Domenico, Maikon; Rouse, Greg W.

2015-01-01

Protodrilidae is a group of small, superficially simple-looking annelids, lacking chaetae and appendages, except for two prostomial palps. Originally considered to be one of the primitive "archiannelid" families, its affinity within Annelida is still highly debated. Protodrilids are found worldwi...

Segmental mode of neural patterning in sipuncula

DEFF Research Database (Denmark)

Kristof, Alen; Wollesen, Tim; Wanninger, Andreas

2008-01-01

Recent molecular phylogenetic analyses suggest a close relationship between two worm-shaped phyla, the nonsegmented Sipuncula (peanut worms) and the segmented Annelida (e.g., earthworms and polychaetes) [1-5]. The striking differences in their bodyplans are exemplified by the annelids' paired...

A critical analysis of the biological impacts of plasticizers on wildlife

DEFF Research Database (Denmark)

Oehlmann, J.; Schulte-Oehlmann, U.; Kloas, W.

2009-01-01

This review provides a critical analysis of the biological effects of the most widely used plasticizers, including dibutyl phthalate, diethylhexyl phthalate, dimethyl phthalate, butyl benzyl phthalate and bisphenol A (BPA), on wildlife, with a focus on annelids ( both aquatic and terrestrial...

Sipunculans and segmentation

DEFF Research Database (Denmark)

Wanninger, Andreas; Kristof, Alen; Brinkmann, Nora

2009-01-01

mechanisms may act on the level of gene expression, cell proliferation, tissue differentiation and organ system formation in individual segments. Accordingly, in some polychaete annelids the first three pairs of segmental peripheral neurons arise synchronously, while the metameric commissures of the ventral...

Acquisition of dwarf male "harems" by recently settled females of Osedax roseus n. sp. (Siboglinidae; Annelida)

DEFF Research Database (Denmark)

Rouse, G W; Worsaae, K; Johnson, S. B.

2008-01-01

After the deployment of several whale carcasses in Monterey Bay, California, a time-series analysis revealed the presence of a new species of Osedax, a genus of bone-eating siboglinid annelids. That species is described here as Osedax roseus n. sp. It is the fifth species described since the erec......After the deployment of several whale carcasses in Monterey Bay, California, a time-series analysis revealed the presence of a new species of Osedax, a genus of bone-eating siboglinid annelids. That species is described here as Osedax roseus n. sp. It is the fifth species described since...... in Osedax. Of the previously described species in this genus, Osedax roseus n. sp. is most similar to O. rubiplumus, but it has several anatomical differences, as well as much smaller females, dwarf males, and eggs. Osedax roseus n. sp. is markedly divergent (minimally 16.6%) for mitochondrial cytochrome...

Musculature in sipunculan worms: ontogeny and ancestral states.

Science.gov (United States)

Schulze, Anja; Rice, Mary E

2009-01-01

Molecular phylogenetics suggests that the Sipuncula fall into the Annelida, although they are morphologically very distinct and lack segmentation. To understand the evolutionary transformations from the annelid to the sipunculan body plan, it is important to reconstruct the ancestral states within the respective clades at all life history stages. Here we reconstruct the ancestral states for the head/introvert retractor muscles and the body wall musculature in the Sipuncula using Bayesian statistics. In addition, we describe the ontogenetic transformations of the two muscle systems in four sipunculan species with different developmental modes, using F-actin staining with fluorescent-labeled phalloidin in conjunction with confocal laser scanning microscopy. All four species, which have smooth body wall musculature and less than the full set of four introvert retractor muscles as adults, go through developmental stages with four retractor muscles that are eventually reduced to a lower number in the adult. The circular and sometimes the longitudinal body wall musculature are split into bands that later transform into a smooth sheath. Our ancestral state reconstructions suggest with nearly 100% probability that the ancestral sipunculan had four introvert retractor muscles, longitudinal body wall musculature in bands and circular body wall musculature arranged as a smooth sheath. Species with crawling larvae have more strongly developed body wall musculature than those with swimming larvae. To interpret our findings in the context of annelid evolution, a more solid phylogenetic framework is needed for the entire group and more data on ontogenetic transformations of annelid musculature are desirable.

Small angle X-ray scattering from protein in solution

International Nuclear Information System (INIS)

Souza, C.F. de; Torriani, I.L.

1988-01-01

In this work we report experiments performed with giant respiratory proteins from annelids. X-ray scattering data were obtained both by the use of conventional rotating anod source and synchotron radiation. Data from solutions with several protein concentrations were analyzed. (A.C.A.S.) [pt

Study on Feeding Habit of Clariid Catfish ( Clarias Gariepinus ...

African Journals Online (AJOL)

A survey was conducted to investigate the feeding habit of catfish (Clarias gariepinus Burchell, 1822) in Otamiri River, South-Eastern Nigeria. Stomach items analyzed include mainly algae, fish scales, annelids, benthic invertebrates, and detritus confirmed the fish as omnivorous species. However, few stomach contents ...

Effect factors for marine eutrophication in LCIA based on species sensitivity to hypoxia

DEFF Research Database (Denmark)

Cosme, Nuno Miguel Dias; Hauschild, Michael Zwicky

2016-01-01

-observed-effect-concentrations (LOEC), were compiled from literature for 91 demersal species of fish, crustaceans, molluscs, echinoderms, annelids, and cnidarians, and converted to temperature-specific benthic (100 m depth) LOEC values. Species distribution and LOEC values were combined using a species sensitivity distribution (SSD...

Freshwater invertebrates of sub-Antarctic Marion Island | Dartnall ...

African Journals Online (AJOL)

The aquatic species include five platyhelminthes, a gastrotrich, three tardigrades, 28 rotifers, six nematodes, two annelids and 11 arthropods. Most are familiar species that have been recorded on other sub-Antarctic islands. The invertebrate faunas of the various freshwater habitats were basically similar in species ...

Did the notochord evolve from an ancient axial muscle? The axochord hypothesis.

Science.gov (United States)

Brunet, Thibaut; Lauri, Antonella; Arendt, Detlev

2015-08-01

The origin of the notochord is one of the key remaining mysteries of our evolutionary ancestry. Here, we present a multi-level comparison of the chordate notochord to the axochord, a paired axial muscle spanning the ventral midline of annelid worms and other invertebrates. At the cellular level, comparative molecular profiling in the marine annelids P. dumerilii and C. teleta reveals expression of similar, specific gene sets in presumptive axochordal and notochordal cells. These cells also occupy corresponding positions in a conserved anatomical topology and undergo similar morphogenetic movements. At the organ level, a detailed comparison of bilaterian musculatures reveals that most phyla form axochord-like muscles, suggesting that such a muscle was already present in urbilaterian ancestors. Integrating comparative evidence at the cell and organ level, we propose that the notochord evolved by modification of a ventromedian muscle followed by the assembly of an axial complex supporting swimming in vertebrate ancestors. © 2015 The Authors. Bioessays published by WILEY Periodicals, Inc.

Guide to Common Tidal Marsh Invertebrates of the Northeastern Gulf of Mexico.

Science.gov (United States)

Heard, Richard W.

The major groups of marine and estuarine macroinvertebrates of the tidal marshes of the northern Gulf of Mexico are described in this guide for students, taxonomists and generalists. Information on the recognition characteristics, distribution, habitat, and biology of salt marsh species from the coelenterate, annelid, mollusk and arthropod phyla…

Gene expression program of regeneration in Eisenia fetida: a transcriptomics study

Directory of Open Access Journals (Sweden)

Aksheev Bhambri

2017-10-01

Full Text Available Annelids form a connecting link between segmented and non-segmented organisms.  In other words, phylogenetically, the segmented body pattern starts from Annelida, a phylum that consists of thousands of species, including marine worms, freshwater leeches and earthworms that inhabit deep layers of soil to environmental niches in forests and cultivated land. We are using Eisenia fetida (Indian isolate a top dwelling, vermicomposting worm due to its ability to regenerate its posterior after damage, injury or complete removal. On average, Eisenia fetida has 100-110 segments. We separated the anterior (upto 55-60th segment and posterior of the worm, and allowed it to regenerate.  In this model, only the posterior could be regenerated after injury.  We isolated RNA from the regenerated tissue and the immediate adjacent old tissue at 15 days, 20 days and 30 days during regeneration. We carried out transcriptome sequencing and analysis. With the aim of identifying specific factors which promote nerve regeneration, we have annotated the differentially expressed genes. In all organisms which possess a segmented body, the expression pattern of the Hox cluster is conserved. Hox gene expression, a conserved developmental phenomenon in establishment of body plan has been studied by comparative genomics of other annelids like the marine worm Capitella telleta, the leech Helobdella robusta.  We have used a combination of high-throughput sequencing based techniques and validation through cell and molecular biology to identify key aspects of the gene expression program of regeneration in this worm. Besides the transcriptome, we have also done whole genome sequencing, miRnome and metagenome sequencing of this terrestrial annelid.

Spionidae (Polychaeta) of the Gulf of Mexico and the Caribbean Sea

NARCIS (Netherlands)

Foster, Nancy Marie

1971-01-01

Although there have been several collections of polychaetous annelids from the Gulf of Mexico and Caribbean Sea, very few spionids have been included in the published species lists. This is not because they are poorly represented in this area but probably a result of their small size and the fact

On a remarkable Syllis-bud with extrudible segmental organs

NARCIS (Netherlands)

Horst, R.

1889-01-01

Among a number of pelagic Annelids, collected in the Malayan Archipelago by Mr. D. S. Hoedt, I met with some fragments of a Syllis-species, characterized as well by its large orange-coloured eyes, as by a series of distinct brown spots on each side of the body. The largest fragment has a length of

Cellular and muscular growth patterns during sipunculan development.

Science.gov (United States)

Kristof, Alen; Wollesen, Tim; Maiorova, Anastassya S; Wanninger, Andreas

2011-05-15

Sipuncula is a lophotrochozoan taxon with annelid affinities, albeit lacking segmentation of the adult body. Here, we present data on cell proliferation and myogenesis during development of three sipunculan species, Phascolosoma agassizii, Thysanocardia nigra, and Themiste pyroides. The first anlagen of the circular body wall muscles appear simultaneously and not subsequently as in the annelids. At the same time, the rudiments of four longitudinal retractor muscles appear. This supports the notion that four introvert retractors were part of the ancestral sipunculan bodyplan. The longitudinal muscle fibers form a pattern of densely arranged fibers around the retractor muscles, indicating that the latter evolved from modified longitudinal body wall muscles. For a short time interval, the distribution of S-phase mitotic cells shows a metameric pattern in the developing ventral nerve cord during the pelagosphera stage. This pattern disappears close to metamorphic competence. Our findings are congruent with data on sipunculan neurogenesis, as well as with recent molecular analyses that place Sipuncula within Annelida, and thus strongly support a segmental ancestry of Sipuncula. Copyright © 2011 Wiley-Liss, Inc., A Wiley Company.

Relations between Agronomic Practice and Earthworms in Norwegian Arable Soils

OpenAIRE

Pommeresche, Reidun; Løes, Anne-Kristin

2009-01-01

This paper presents Norwegian studies of earthworms (density, biomass, burrows density, species, juvenile to adult ratios) in arable soil in Norway conducted during the last 20 years. The effects of crop rotations, fertilization, soil tillage and compaction on earthworms are presented, based on various field experiments. Geophagous (soil eating) species such as Aporrectodea caliginosa and A. rosea dominate the earthworm fauna in Norwegian arable soil. Lumbricus terrestris is also present; in ...

Characterization, molecular cloning and localization of calreticulin in Eisenia fetida earthworms

Czech Academy of Sciences Publication Activity Database

Šilerová, Marcela; Kauschke, E.; Kohlerová, Petra; Josková, Radka; Tučková, Ludmila; Bilej, Martin

2007-01-01

Roč. 397, - (2007), s. 169-177 ISSN 0378-1119 R&D Projects: GA ČR GD310/03/H147; GA AV ČR IAA5020208; GA MŠk 2B06155 Institutional research plan: CEZ:AV0Z50200510 Keywords : earthworms * annelids * invertebrates Subject RIV: EE - Microbiology, Virology Impact factor: 2.871, year: 2007

Sublethal Toxic effects of spent Oil Based Drilling Mud and Cuttings ...

African Journals Online (AJOL)

Sublethal toxic effects of spent oil based drilling mud collected from an abandoned oil drilling site in Mpanak, Akwa Ibom State, Nigeria were assessed in the earthworm Aporrectodea longa. The test annelid was exposed to sub-lethal Concentration of 0ppm SPP; 62,500ppm SPP; 125, 000ppm SPP; 250,000ppm SPP and ...

Studium diverzity a aktivity mikrobního společenstva výsypkových substrátů ovlivněných aktivitou pionýrského druhu žížaly .i.Lumbricus rubellus./i. (Oligochaeta: Lumbricidae)

Czech Academy of Sciences Publication Activity Database

Krištůfek, Václav; Frouz, Jan; Elhottová, Dana; Márialigeti, K.; Borsodi, A.; Tóth, E.; Ruznyak, A.; Chroňáková, Alica; Uhlířová, E.; Pižl, Václav; Šustr, Vladimír; Baldrian, Petr

2007-01-01

Roč. 15, č. 1 (2007), VII-VIII ISSN 1210-4612 R&D Projects: GA MŠk LC06066; GA MŠk 2B06154; GA AV ČR 1QS600660505 Grant - others:MŠMT(CZ) 12/2004 Institutional research plan: CEZ:AV0Z60660521; CEZ:AV0Z50200510 Source of funding: V - iné verejné zdroje Keywords : microbial community * saprophagous fauna * diverzity Subject RIV: EH - Ecology, Behaviour

Seed selection by earthworms : chemical seed properties matter more than morphological traits

OpenAIRE

Clause, J.; Forey, E.; Eisenhauer, N.; Seal, C.E.; Soudey, A.; Colville, L.; Barot, Sébastien

2017-01-01

Aims : The passage of seeds through the earthworm gut potentially damages seeds, altering seed and seedling performances depending on seed traits. This work was conducted to study to what extent chemical and morphological seed traits determine the seed attractiveness for earthworms. Methods : We tested seed selection via the ingestion and digestion of 23 grassland plant species spanning a range of 14 morphological and chemical traits by two common earthworm species: the anecic Lumbricus te...

Effects of Earthworms on the Dispersal of Steinernema spp.

OpenAIRE

Shapiro, D. I.; Tylka, G. L.; Berry, E. C.; Lewis, L. C.

1995-01-01

Previous studies indicated that dispersal of S. carpocapsae may be enhanced in soil with earthworms. The objective of this research was to determine and compare the effects of earthworms on dispersal of other Steinernema spp. Vertical dispersal of Steinernema carpocapsae, S. feltiae, and S. glaseri was tested in soil columns in the presence and absence of earthworms (Lumbricus terrestris). Dispersal was evaluated by a bioassay and by direct extraction of nematodes from soil. Upward dispersal ...

Reconnaissance Waccamaw River Basin North Carolina and South Carolina. Flood Control and Related Purposes.

Science.gov (United States)

1981-09-01

carota), horseweed (Erigeron canadensis), plantain (Plantago lanceolata, P. virginica, P. aristata), horse nettle (Solanum carolinense), dog fennel... insects that are used for food by the red-eyed vireo, scarlet tanager, tufted titmouse, common flicker, and various warblers. The abundant birds and...Detritivores, including immature stages of aquatic insects , small arthropods, and annelid worms, which thrive in this wetland community are consumed

Compilation of Abstracts of Theses Submitted by Candidates for Degrees.

Science.gov (United States)

1982-05-01

own manufacture. A number of nestling organisms were found. The annelid nestlers found in this region show a large variation across the vertical face...military needs of all the reqional actors: the United States, Vietnam, China, ASEAN (Thailand, Malaysia , Singapore, Indonesia, and the Republic of the... Malaysia , Singapore, Indonesia, and the Philippine Islands. This region strategically encompasses the primary route between the Indian and Pacific

Fisheries Resource Utilization of an Estuarine Borrow Pit in Mobile Bay, Alabama

Science.gov (United States)

2014-07-01

invertebrates are present, they are generally represented by pollution indicator species, such as the annelid polychaetes Capitella capitata or Streblospio...most likely incidental captures taken along the rim or upper side slopes of the basin. Blue crabs were present at both sites but in low numbers...across the dredged holes yielded some evidence of association between fish targets and bathymetric features, such as the toes or upper rims of the

Cartap poisoning: A rare case report.

Science.gov (United States)

Kumar, A S Praveen; Amalnath, Deepak; Dutta, T K

2011-10-01

Cartap is a pesticide commonly used to control weevil and caterpillars. It is an analogue of nereistoxin, a neurotoxic substance isolated from the marine annelid Lumbriconereis heteropoda. It causes neuromuscular blockade. Poisoning with cartap is very rare and not yet reported from India. We report a 35-year-old lady with cartap poisoning who presented with nausea, vomiting, and dyspnea. She improved with N-acetyl cysteine and symptomatic management.

Cartap poisoning: A rare case report

OpenAIRE

Kumar, A. S. Praveen; Amalnath, Deepak; Dutta, T. K.

2011-01-01

Cartap is a pesticide commonly used to control weevil and caterpillars. It is an analogue of nereistoxin, a neurotoxic substance isolated from the marine annelid Lumbriconereis heteropoda. It causes neuromuscular blockade. Poisoning with cartap is very rare and not yet reported from India. We report a 35-year-old lady with cartap poisoning who presented with nausea, vomiting, and dyspnea. She improved with N-acetyl cysteine and symptomatic management.

Complete mitochondrial genome sequence of the polychaete annelidPlatynereis dumerilii

Energy Technology Data Exchange (ETDEWEB)

Boore, Jeffrey L.

2004-08-15

Complete mitochondrial genome sequences are now available for 126 metazoans (see Boore 1999; Mitochondrial Genomics link at http://www.jgi.doe.gov), but the taxonomic representation is highly biased. For example, 80 are from a single phylum, Chordata, and show little variation for many molecular features. Arthropoda is represented by 16 taxa, Mollusca by eight, and Echinodermata by five, with only 17 others from the remaining {approx}30 metazoan phyla. With few exceptions (see Wolstenholme 1992 and Boore 1999) these are circular DNA molecules, about 16 kb in size, and encode the same set of 37 genes. A variety of non-standard names are sometimes used for animal mitochondrial genes; see Boore (1999) for gene nomenclature and a table of synonyms. Mitochondrial genome comparisons serve as a model of genome evolution. In this system, much smaller and simpler than that of the nucleus, are all of the same factors of genome evolution, where one may find tractable the changes in tRNA structure, base composition, genetic code, gene arrangement, etc. Further, patterns of mitochondrial gene rearrangements are an exceptionally reliable indicator of phylogenetic relationships (Smith et al.1993; Boore et al. 1995; Boore, Lavrov, and Brown 1998; Boore and Brown 1998, 2000; Dowton 1999; Stechmann and Schlegel 1999; Kurabayashi and Ueshima 2000). To these ends, we are sampling further the variation among major animal groups in features of their mitochondrial genomes.

Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura.

Science.gov (United States)

Boore, Jeffrey L

2004-09-15

Mitochondria contain small genomes that are physically separate from those of nuclei. Their comparison serves as a model system for understanding the processes of genome evolution. Although hundreds of these genome sequences have been reported, the taxonomic sampling is highly biased toward vertebrates and arthropods, with many whole phyla remaining unstudied. This is the first description of a complete mitochondrial genome sequence of a representative of the phylum Echiura, that of the fat innkeeper worm, Urechis caupo. This mtDNA is 15,113 nts in length and 62% A+T. It contains the 37 genes that are typical for animal mtDNAs in an arrangement somewhat similar to that of annelid worms. All genes are encoded by the same DNA strand which is rich in A and C relative to the opposite strand. Codons ending with the dinucleotide GG are more frequent than would be expected from apparent mutational biases. The largest non-coding region is only 282 nts long, is 71% A+T, and has potential for secondary structures. Urechis caupo mtDNA shares many features with those of the few studied annelids, including the common usage of ATG start codons, unusual among animal mtDNAs, as well as gene arrangements, tRNA structures, and codon usage biases.

Macropores and earthworm species affected by agronomic intensification

DEFF Research Database (Denmark)

Krogh, Paul Henning; Pérès, Guénola

project EcoFINDERS we investigated the relationsship between earthworm biodiversity, macropores and three agricultural landuse types. A field campaign was conducted in October-November 2011. Earthworm burrow distribution was quantified at 10, 20, 30, 50 and 100 20 cm horizontal layer intervals down...... the soil profile to 1 meter depth and correlated with the earthworm community consisting of 12 species dominated by the endogeics Aporrectodea caliginosa and Aporrectodea chlorotica and the anecics Aporrectodea longa and Lumbricus centralis. Medium-small macropores in the ploughing layer with diameters (Ø...

Integrative analysis of polychaete ontogeny: cell proliferation patterns and myogenesis in trochophore larvae of Sabellaria alveolata

DEFF Research Database (Denmark)

Brinkmann, Nora; Wanninger, Andreas

2010-01-01

Aspects of muscle development are still widely neglected in studies on invertebrate ontogeny, which is probably at least partly due to the inherent complexity of animal myoanatomical bodyplans. This has resulted in significant gaps in our understanding of the evolutionary and ontogenetic origin...... analysis suggests that the bodywall of the last common annelid ancestor might have been devoid of circular muscles and consisted of four separate longitudinal muscle strands that develop from anterior to posterior....

Transmission of Nephridial Bacteria of the Earthworm Eisenia fetida

OpenAIRE

Davidson, Seana K.; Stahl, David A.

2006-01-01

The lumbricid earthworms (annelid family Lumbricidae) harbor gram-negative bacteria in their excretory organs, the nephridia. Comparative 16S rRNA gene sequencing of bacteria associated with the nephridia of several earthworm species has shown that each species of worm harbors a distinct bacterial species and that the bacteria from different species form a monophyletic cluster within the genus Acidovorax, suggesting that there is a specific association resulting from radiation from a common b...

陸奥湾におけるマクロベントスの時空間分布

OpenAIRE

高橋, 豊美; 前田, 辰昭; 中谷, 敏邦; 柳川, 延之

1986-01-01

In order to elucidate the conditions of food environments for righteye flounders Limanda herzensteini and L. yokohamae in Mutsu Bay, Aomori Prefecture, the distributions of macrobenthos were investigated by analyzing grab samples obtained at approximately 300 stations chiefly from March 1980 to February 1983. Faunal composition in the bay was correlated with the mud contents in the bottom sediments. In the extensive mud bottom in offshore area polychaete annelids predominated, representing 82...

Diversity of earthworms (Clitellata: Lumbricidae from Sredna Gora Mountain (Bulgaria

Directory of Open Access Journals (Sweden)

Valchovski, H.

2016-07-01

Full Text Available In the current study the diversity, zoogeographical position and distribution of earthworms from Sredna Gora Mountain (Bulgaria is presented. During the present investigation, altogether ten earthworm species belonging to seven genera were collected. Among them, seven taxa are reported for the first time from the Sredna Gora Mt.: Cernosvitovia rebeli, Dendrobaena alpina, Allolobophoridella eiseni, Dendrodrilus rubidus rubidus, Aporrectodea caliginosa, Aporrectodea rosea and Lumbricus terrestris. On the basis of the new and literature data here we provide the first list of lumbricid earthworms from Sredna Gora Mountain.

The normal development of Platynereis dumerilii (Nereididae, Annelida

Directory of Open Access Journals (Sweden)

Henrich Thorsten

2010-12-01

Full Text Available Abstract Background The polychaete annelid Platynereis dumerilii is an emerging model organism for the study of molecular developmental processes, evolution, neurobiology and marine biology. Annelids belong to the Lophotrochozoa, the so far understudied third major branch of bilaterian animals besides deuterostomes and ecdysozoans. P. dumerilii has proven highly relevant to explore ancient bilaterian conditions via comparison to the deuterostomes, because it has accumulated less evolutionary change than conventional ecdysozoan models. Previous staging was mainly referring to hours post fertilization but did not allow matching stages between studies performed at (even slightly different temperatures. To overcome this, and to provide a first comprehensive description of P. dumerilii normal development, a temperature-independent staging system is needed. Results Platynereis dumerilii normal development is subdivided into 16 stages, starting with the zygote and ending with the death of the mature worms after delivering their gametes. The stages described can be easily identified by conventional light microscopy or even by dissecting scope. Developmental landmarks such as the beginning of phototaxis, the visibility of the stomodeal opening and of the chaetae, the first occurrence of the ciliary bands, the formation of the parapodia, the extension of antennae and cirri, the onset of feeding and other characteristics are used to define different developmental stages. The morphology of all larval stages as well as of juveniles and adults is documented by light microscopy. We also provide an overview of important steps in the development of the nervous system and of the musculature, using fluorescent labeling techniques and confocal laser-scanning microscopy. Timing of each developmental stage refers to hours post fertilization at 18 ± 0.1°C. For comparison, we determined the pace of development of larvae raised at 14°C, 16°C, 20°C, 25°C, 28°C and

Insights into metazoan evolution from alvinella pompejana cDNAs

Directory of Open Access Journals (Sweden)

Thierry Jean-Claude

2010-11-01

Full Text Available Abstract Background Alvinella pompejana is a representative of Annelids, a key phylum for evo-devo studies that is still poorly studied at the sequence level. A. pompejana inhabits deep-sea hydrothermal vents and is currently known as one of the most thermotolerant Eukaryotes in marine environments, withstanding the largest known chemical and thermal ranges (from 5 to 105°C. This tube-dwelling worm forms dense colonies on the surface of hydrothermal chimneys and can withstand long periods of hypo/anoxia and long phases of exposure to hydrogen sulphides. A. pompejana specifically inhabits chimney walls of hydrothermal vents on the East Pacific Rise. To survive, Alvinella has developed numerous adaptations at the physiological and molecular levels, such as an increase in the thermostability of proteins and protein complexes. It represents an outstanding model organism for studying adaptation to harsh physicochemical conditions and for isolating stable macromolecules resistant to high temperatures. Results We have constructed four full length enriched cDNA libraries to investigate the biology and evolution of this intriguing animal. Analysis of more than 75,000 high quality reads led to the identification of 15,858 transcripts and 9,221 putative protein sequences. Our annotation reveals a good coverage of most animal pathways and networks with a prevalence of transcripts involved in oxidative stress resistance, detoxification, anti-bacterial defence, and heat shock protection. Alvinella proteins seem to show a slow evolutionary rate and a higher similarity with proteins from Vertebrates compared to proteins from Arthropods or Nematodes. Their composition shows enrichment in positively charged amino acids that might contribute to their thermostability. The gene content of Alvinella reveals that an important pool of genes previously considered to be specific to Deuterostomes were in fact already present in the last common ancestor of the Bilaterian

Occurrence of parasitism by Dioctophyma renale in ring-tailed coatis (Nasua nasua) of the Tiete Ecological Park, São Paulo, Brazil Ocorrência de parasitismo por Dioctophyma renale em quati (Nasua nasua) do Parque Ecológico Tietê, São Paulo

OpenAIRE

Liliane Milanelo; Márcia Bento Moreira; Lílian S. Fitorra; Bruno S.S. Petri; Melissa Alves; Aparecida de Cássia dos Santos

2009-01-01

Dioctophymosis is a worldwide renal parasitosis caused by the Dioctophyma renale nematode, which results in progressive destruction of renal tissue. Aquatics annelids are considered the main intermediate hosts and the literature refers as permanent hosts of dogs, wild mammals and even humans. During procedures for population control of coatis (Nasua nasua) in the Ecological Park of Tietê (PET), was noticed the presence of parasitosis by D. renale. From 68 animals, males and females, young and...

Occurrence of parasitism by Dioctophyma renale in ring-tailed coatis (Nasua nasua) of the Tiete Ecological Park, São Paulo, Brazil

OpenAIRE

Milanelo,Liliane; Moreira,Márcia Bento; Fitorra,Lílian S.; Petri,Bruno S.S.; Alves,Melissa; Santos,Aparecida de Cássia dos

2009-01-01

Dioctophymosis is a worldwide renal parasitosis caused by the Dioctophyma renale nematode, which results in progressive destruction of renal tissue. Aquatics annelids are considered the main intermediate hosts and the literature refers as permanent hosts of dogs, wild mammals and even humans. During procedures for population control of coatis (Nasua nasua) in the Ecological Park of Tietê (PET), was noticed the presence of parasitosis by D. renale. From 68 animals, males and females, young and...

On a specimen of Lumbricus terrestris, L. with bifurcated tail

NARCIS (Netherlands)

Horst, R.

1886-01-01

In the last number of the »Annals and Magazine of Nat. History” (Dec. 1885), I find a notice of Prof. Jeffrey Bell about two Lumbrici with bifid hinder ends, one specimen belonging to L. terrestris, the other to L. foetidus; moreover he mentions a specimen, presenting a similar remarquable

Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura

Directory of Open Access Journals (Sweden)

Boore Jeffrey L

2004-09-01

Full Text Available Abstract Background Mitochondria contain small genomes that are physically separate from those of nuclei. Their comparison serves as a model system for understanding the processes of genome evolution. Although hundreds of these genome sequences have been reported, the taxonomic sampling is highly biased toward vertebrates and arthropods, with many whole phyla remaining unstudied. This is the first description of a complete mitochondrial genome sequence of a representative of the phylum Echiura, that of the fat innkeeper worm, Urechis caupo. Results This mtDNA is 15,113 nts in length and 62% A+T. It contains the 37 genes that are typical for animal mtDNAs in an arrangement somewhat similar to that of annelid worms. All genes are encoded by the same DNA strand which is rich in A and C relative to the opposite strand. Codons ending with the dinucleotide GG are more frequent than would be expected from apparent mutational biases. The largest non-coding region is only 282 nts long, is 71% A+T, and has potential for secondary structures. Conclusions Urechis caupo mtDNA shares many features with those of the few studied annelids, including the common usage of ATG start codons, unusual among animal mtDNAs, as well as gene arrangements, tRNA structures, and codon usage biases.

Embryonic chirality and the evolution of spiralian left–right asymmetries

Science.gov (United States)

2016-01-01

The group Spiralia includes species with one of the most significant cases of left–right asymmetries in animals: the coiling of the shell of gastropod molluscs (snails). In this animal group, an early event of embryonic chirality controlled by cytoskeleton dynamics and the subsequent differential activation of the genes nodal and Pitx determine the left–right axis of snails, and thus the direction of coiling of the shell. Despite progressive advances in our understanding of left–right axis specification in molluscs, little is known about left–right development in other spiralian taxa. Here, we identify and characterize the expression of nodal and Pitx orthologues in three different spiralian animals—the brachiopod Novocrania anomala, the annelid Owenia fusiformis and the nemertean Lineus ruber—and demonstrate embryonic chirality in the biradial-cleaving spiralian embryo of the bryozoan Membranipora membranacea. We show asymmetric expression of nodal and Pitx in the brachiopod and annelid, respectively, and symmetric expression of Pitx in the nemertean. Our findings indicate that early embryonic chirality is widespread and independent of the cleavage programme in the Spiralia. Additionally, our study illuminates the evolution of nodal and Pitx signalling by demonstrating embryonic asymmetric expression in lineages without obvious adult left–right asymmetries. This article is part of the themed issue ‘Provocative questions in left–right asymmetry’. PMID:27821523

Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms.

Science.gov (United States)

Anderson, Frank E; Williams, Bronwyn W; Horn, Kevin M; Erséus, Christer; Halanych, Kenneth M; Santos, Scott R; James, Samuel W

2017-05-30

Earthworms (Crassiclitellata) are a diverse group of annelids of substantial ecological and economic importance. Earthworms are primarily terrestrial infaunal animals, and as such are probably rather poor natural dispersers. Therefore, the near global distribution of earthworms reflects an old and likely complex evolutionary history. Despite a long-standing interest in Crassiclitellata, relationships among and within major clades remain unresolved. In this study, we evaluate crassiclitellate phylogenetic relationships using 38 new transcriptomes in combination with publicly available transcriptome data. Our data include representatives of nearly all extant earthworm families and a representative of Moniligastridae, another terrestrial annelid group thought to be closely related to Crassiclitellata. We use a series of differentially filtered data matrices and analyses to examine the effects of data partitioning, missing data, compositional and branch-length heterogeneity, and outgroup inclusion. We recover a consistent, strongly supported ingroup topology irrespective of differences in methodology. The topology supports two major earthworm clades, each of which consists of a Northern Hemisphere subclade and a Southern Hemisphere subclade. Divergence time analysis results are concordant with the hypothesis that these north-south splits are the result of the breakup of the supercontinent Pangaea. These results support several recently proposed revisions to the classical understanding of earthworm phylogeny, reveal two major clades that seem to reflect Pangaean distributions, and raise new questions about earthworm evolutionary relationships.

Osedax borings in fossil marine bird bones

OpenAIRE

Kiel, Steffen; Kahl, Wolf-Achim; Goedert, James L.

2010-01-01

The bone-eating marine annelid Osedax consumes mainly whale bones on the deep-sea floor, but recent colonization experiments with cow bones and molecular age estimates suggesting a possible Cretaceous origin of Osedax indicate that this worm might be able grow on a wider range of substrates. The suggested Cretaceous origin was thought to imply that Osedax could colonize marine reptile or fish bones, but there is currently no evidence that Osedax consumes bones other than those of mammals. We ...

A comparative study of the contamination of some marine burrower invertebrates by cobalt 60 and cesium 137

International Nuclear Information System (INIS)

Amiard-Triquet, C.

1975-01-01

Experments were carried out with species whose mode of life is characterized by close contact with the sediments; they represent different zoological groups: an Annelid (Arenicola marina L.), an Echinoderm (Echinocardium cordatum Pennant) and two Lamellibranchs (Scrobicularia plana da Costa, Macoma balthica L.). The data obtained indicate that main vector of contamination of benthic marine invertebrates is water. The main part of these organisms in the sedimentary zone would be the redistribution, within the sediment, of radioelements adsorbed on the surface [fr

Antioxidant responses of Annelids, Brassicaceae and Fabaceae to pollutants: a review.

Science.gov (United States)

Bernard, F; Brulle, F; Dumez, S; Lemiere, S; Platel, A; Nesslany, F; Cuny, D; Deram, A; Vandenbulcke, F

2015-04-01

Pollutants, such as Metal Trace Elements (MTEs) and organic compounds (polycyclic aromatic hydrocarbons, pesticides), can impact DNA structure of living organisms and thus generate damage. For instance, cadmium is a well-known genotoxic and mechanisms explaining its clastogenicity are mainly indirect: inhibition of DNA repair mechanisms and/or induction of Reactive Oxygen Species (ROS). Animal or vegetal cells use antioxidant defense systems to protect themselves against ROS produced during oxidative stress. Because tolerance of organisms depends, at least partially, on their ability to cope with ROS, the mechanisms of production and management of ROS were investigated a lot in Ecotoxicology as markers of biotic and abiotic stress. This was mainly done through the measurement of enzyme activities The present Review focuses on 3 test species living in close contact with soil that are often used in soil ecotoxicology: the worm Eisenia fetida, and two plant species, Trifolium repens (white clover) and Brassica oleracea (cabbage). E. fetida is a soil-dwelling organism commonly used for biomonitoring. T. repens is a symbiotic plant species which forms root nodule with soil bacteria, while B. oleracea is a non-symbiotic plant. In literature, some oxidative stress enzyme activities have already been measured in those species but such analyses do not allow distinction between individual enzyme involvements in oxidative stress. Gene expression studies would allow this distinction at the transcriptomic level. A literature review and a data search in molecular database were carried out on the basis of keywords in Scopus, in PubMed and in Genbank™ for each species. Molecular data regarding E. fetida were already available in databases, but a lack of data regarding oxidative stress related genes was observed for T. repens and B. oleracea. By exploiting the conservation observed between species and using molecular biology techniques, we partially cloned missing candidates involved in oxidative stress and in metal detoxification in E. fetida, T. repens and B. oleracea. Copyright © 2014 Elsevier Inc. All rights reserved.

New aspects of the possible sites of ultrafiltration in annelids (oligochaeta).

Science.gov (United States)

Hansen, U

1995-02-01

Electron microscopic investigations of blood vessels were conducted to show sites of filtration such as podocytes or fenestrated endothelia. The endothelia of the blood vessels of Aelosoma hemprichi, Nais elinguis, Dero obtusa and Enchytraeus buchholzi consist of myoendothelial cells, chloragocytes and podocytes. The podocytes form large archs over a considerable area of the vessels. On the lumen side of the vessel there are several columnar processes which split into numerous small pedicels. The gaps between the adjacent pedicles are bridged by slit membranes. The podocytes are restricted to the front part of the ventral vessel. They are presumed to form a filtration surface. Furthermore, some parts of the ventral vessel are formed by a fenestrated endothelium, mainly in Enchytraeus buchholzi. In the vascular system of E. buchholzi two separate filtration sites were found. Additionally to the filtration site between ventral vessel and coelomic cavity a second filtration site was found in the front part of the body between blood sinus and coelomic cavity. In such areas the basement membrane is the only continuous layer between the blood vessel and the coelomic cavity. Its thickness is in the range of 40 nm. Possible filtration sites in the form of podocytes and irregular fenestrations could be localized at the border between the blood compartment and the coelomic compartment. It can be presumed that the primary urine may be formed by ultrafiltration of blood.

The impact of pedestrian activity on soil annelids in urban greens

Czech Academy of Sciences Publication Activity Database

Pižl, Václav; Schlaghamerský, J.

2007-01-01

Roč. 43, Suppl. 1 (2007), S68-S71 ISSN 1164-5563 R&D Projects: GA AV ČR IAA600660608 Institutional research plan: CEZ:AV0Z60660521 Keywords : earthworms * enchytraeids * pedestrian activity Subject RIV: EH - Ecology, Behaviour Impact factor: 0.500, year: 2007

Effects of chronic exposure to clothianidin on the earthworm Lumbricus terrestris.

Science.gov (United States)

Basley, Kate; Goulson, Dave

2017-01-01

Although neonicotinoids are targeted at insects, their predominant use as a seed dressing and their long persistence in soils mean that non-target soil organisms such as earthworms are likely to be chronically exposed to them. Chronic exposure may pose risks that are not evaluated in most toxicity tests. We experimentally tested the effect of field-realistic concentrations of a commonly used neonicotinoid, clothianidin, on mortality, weight gain, and food consumption to assess the impacts of chronic exposure over four months on fitness of L. terrestris individuals. We undertook three separate experiments, each with different exposure routes: treated soil only (experiment A), treated food and soil combined (experiment B) and treated food only (experiment C). Mortality was negatively affected by exposure from treated soil only with greatest mortality observed in the groups exposed to the two highest concentrations (20 ppb and 100 ppb), but no clear effect on mortality was found in the other two experiments. When clothianidin was present in the food, an anti-feedant effect was present in months one and two which subsequently disappeared; if this occurs in the field, it could result in reduced rates of decomposition of treated crop foliage. We found no significant effects of any treatment on worm body mass. We cannot rule out stronger adverse effects if worms come into close proximity to treated seeds, or if other aspects of fitness were examined. Overall, our data suggest that field-realistic exposure to clothianidin has a significant but temporary effect on food consumption and can have weak but significant impacts on mortality of L. terrestris.

Effects of chronic exposure to clothianidin on the earthworm Lumbricus terrestris

Directory of Open Access Journals (Sweden)

Kate Basley

2017-04-01

Full Text Available Although neonicotinoids are targeted at insects, their predominant use as a seed dressing and their long persistence in soils mean that non-target soil organisms such as earthworms are likely to be chronically exposed to them. Chronic exposure may pose risks that are not evaluated in most toxicity tests. We experimentally tested the effect of field-realistic concentrations of a commonly used neonicotinoid, clothianidin, on mortality, weight gain, and food consumption to assess the impacts of chronic exposure over four months on fitness of L. terrestris individuals. We undertook three separate experiments, each with different exposure routes: treated soil only (experiment A, treated food and soil combined (experiment B and treated food only (experiment C. Mortality was negatively affected by exposure from treated soil only with greatest mortality observed in the groups exposed to the two highest concentrations (20 ppb and 100 ppb, but no clear effect on mortality was found in the other two experiments. When clothianidin was present in the food, an anti-feedant effect was present in months one and two which subsequently disappeared; if this occurs in the field, it could result in reduced rates of decomposition of treated crop foliage. We found no significant effects of any treatment on worm body mass. We cannot rule out stronger adverse effects if worms come into close proximity to treated seeds, or if other aspects of fitness were examined. Overall, our data suggest that field-realistic exposure to clothianidin has a significant but temporary effect on food consumption and can have weak but significant impacts on mortality of L. terrestris.

Lytic activities in coelomic fluid of Eisenia foetida and Lumbricus terrestris.

Science.gov (United States)

Tucková, L; Rejnek, J; Síma, P; Ondrejová, R

1986-01-01

Coelomic fluids of the two earthworm species E.foetida (E.F.) and L.terrestris (L.T.) have not only the ability to lyse various vertebrate erythrocytes but also to digest vertebrate serum proteins. Both activities are carried by different molecules since hemolysis but not proteolysis was inhibited by simple sugars. In contrary, proteolysis was blocked by PMSF which did not influence hemolysis. Coelomic fluids of E.F. digest effectively vertebrate serum proteins (PIgG, HSA) but not the proteins of L.T. coelomic fluids. The proteolytic activity was detected in approximately 40 000 mol. wt. fraction. After digestion proteolytic fragments were analyzed by immunoelectrophoresis, SDS-PAGE and TCA precipitation. Two of the fragments reacting with PIgG antisera remained intact even after 120 h digestion.

Small angle x-ray scattering from proteins in solution

International Nuclear Information System (INIS)

de Souza, C.F.; Torriani, I.L.; Bonafe, C.F.S.; Merrelles, N.C.; Vachette, P.

1989-01-01

In this work the authors report experiments performed with giant respiratory proteins from annelids (erythrocruorins), known to have a molecular weight in the order of four million Daltons. Preliminary x-ray scattering data was obtained using a conventional rotating anode source. High resolution small angle scattering curves were obtained with synchrotron radiation from the DCI storage ring at LURE. Data from solutions with several protein concentrations were analyzed in order to determine low resolution dimensional parameters, using Guinier plots from the smeared scattering curves and the inverse transformation method

Diversity of marine invertebrates in a thermal effluent

International Nuclear Information System (INIS)

Logan, D.T.; Maurer, D.

1975-01-01

Invertebrates were collected at four sites in the Indian River and Indian River Bay in Delaware to study the effects of thermal effluents from a steam-generating plant. A list of species of anemones, nemerteans, annelids, molluscs, and crustaceans is presented. Differences in species composition, an increase in relative numbers of a pollution indicator organism, and reduction in species number and in the total number of organisms in the effluent were noted. The period of highest diversity corresponded to that of the lowest numbers of species and individuals and highest effluent temperatures. (U.S.)

A critical analysis of the biological impacts of plasticizers on wildlife

Science.gov (United States)

Oehlmann, Jörg; Schulte-Oehlmann, Ulrike; Kloas, Werner; Jagnytsch, Oana; Lutz, Ilka; Kusk, Kresten O.; Wollenberger, Leah; Santos, Eduarda M.; Paull, Gregory C.; Van Look, Katrien J. W.; Tyler, Charles R.

2009-01-01

This review provides a critical analysis of the biological effects of the most widely used plasticizers, including dibutyl phthalate, diethylhexyl phthalate, dimethyl phthalate, butyl benzyl phthalate and bisphenol A (BPA), on wildlife, with a focus on annelids (both aquatic and terrestrial), molluscs, crustaceans, insects, fish and amphibians. Moreover, the paper provides novel data on the biological effects of some of these plasticizers in invertebrates, fish and amphibians. Phthalates and BPA have been shown to affect reproduction in all studied animal groups, to impair development in crustaceans and amphibians and to induce genetic aberrations. Molluscs, crustaceans and amphibians appear to be especially sensitive to these compounds, and biological effects are observed at environmentally relevant exposures in the low ng l−1 to µg l−1 range. In contrast, most effects in fish (except for disturbance in spermatogenesis) occur at higher concentrations. Most plasticizers appear to act by interfering with the functioning of various hormone systems, but some phthalates have wider pathways of disruption. Effect concentrations of plasticizers in laboratory experiments coincide with measured environmental concentrations, and thus there is a very real potential for effects of these chemicals on some wildlife populations. The most striking gaps in our current knowledge on the impacts of plasticizers on wildlife are the lack of data for long-term exposures to environmentally relevant concentrations and their ecotoxicity when part of complex mixtures. Furthermore, the hazard of plasticizers has been investigated in annelids, molluscs and arthropods only, and given the sensitivity of some invertebrates, effects assessments are warranted in other invertebrate phyla. PMID:19528055

Annotation of nerve cord transcriptome in earthworm Eisenia fetida

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Vasanthakumar Ponesakki

2017-12-01

Full Text Available In annelid worms, the nerve cord serves as a crucial organ to control the sensory and behavioral physiology. The inadequate genome resource of earthworms has prioritized the comprehensive analysis of their transcriptome dataset to monitor the genes express in the nerve cord and predict their role in the neurotransmission and sensory perception of the species. The present study focuses on identifying the potential transcripts and predicting their functional features by annotating the transcriptome dataset of nerve cord tissues prepared by Gong et al., 2010 from the earthworm Eisenia fetida. Totally 9762 transcripts were successfully annotated against the NCBI nr database using the BLASTX algorithm and among them 7680 transcripts were assigned to a total of 44,354 GO terms. The conserve domain analysis indicated the over representation of P-loop NTPase domain and calcium binding EF-hand domain. The COG functional annotation classified 5860 transcript sequences into 25 functional categories. Further, 4502 contig sequences were found to map with 124 KEGG pathways. The annotated contig dataset exhibited 22 crucial neuropeptides having considerable matches to the marine annelid Platynereis dumerilii, suggesting their possible role in neurotransmission and neuromodulation. In addition, 108 human stem cell marker homologs were identified including the crucial epigenetic regulators, transcriptional repressors and cell cycle regulators, which may contribute to the neuronal and segmental regeneration. The complete functional annotation of this nerve cord transcriptome can be further utilized to interpret genetic and molecular mechanisms associated with neuronal development, nervous system regeneration and nerve cord function.

The development of the larval nervous system, musculature and ciliary bands of Pomatoceros lamarckii (Annelida: heterochrony in polychaetes

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Shimeld Sebastian M

2006-10-01

Full Text Available Abstract Background To understand the evolution of animals it is essential to have taxon sampling across a representative spread of the animal kingdom. With the recent rearrangement of most of the Bilateria into three major clades (Ecdysozoa, Lophotrochozoa and Deuterostomia it has become clear that the Lophotrochozoa are relatively poorly represented in our knowledge of animal development, compared to the Ecdysozoa and Deuterostomia. We aim to contribute towards redressing this balance with data on the development of the muscular, nervous and ciliary systems of the annelid Pomatoceros lamarckii (Serpulidae. We compare our data with other lophotrochozoans. Results P. lamarckii develops locomotory and feeding structures that enable it to become a swimming, planktotrophic larva within 24 hours. Formation of the trochophore includes development of a prototroch, metatroch and neurotroch, development of apical and posterior nervous elements at similar times, and development of musculature around the ciliary bands and digestive tract prior to development of any body wall muscles. The adult nervous and muscular systems are essentially preformed in the late larva. Interestingly, the muscular systems of the larvae and juvenile worms do not include the circular muscles of the body wall, which are considered to be plesiomorphic for annelids, although the possibility that circular muscles develop after these stages cannot be ruled out at this point. Conclusion A comparison between polychaetes shows variability in the timing (heterochrony of development of body wall muscles and elements of the nervous system. These heterochronies are one route for evolution of different life history strategies, such as adaptations to feeding requirements.

Checklist of earthworms (Oligochaeta: Lumbricidae) from Germany.

Science.gov (United States)

Lehmitz, Ricarda; Römbke, Jörg; Jänsch, Stephan; Krück, Stefanie; Beylich, Anneke; Graefe, Ulfert

2014-09-23

A checklist of the German earthworm fauna (Oligochaeta: Lumbricidae) is presented, including published data, data from reports, diploma- and PhD- theses as well as unpublished data from museum collections, research institutions and private persons. Overall, 16,000 datasets were analyzed to produce the first German checklist of Lumbricidae. The checklist comprises 46 earthworm species from 15 genera and provides ecological information, zoogeographical distribution type and information on the species distribution in Germany. Only one species, Lumbricus badensis Michaelsen, 1907, is endemic to Germany, whereas 41% are peregrine. As there are 14 species occurring exclusively in the southern or eastern part of Germany, the species numbers in German regions increase from north to south.

Estudio bioedafologico preliminar de la isla gorgona

OpenAIRE

Chamorro, Clara; Tórres F., Orlando; Pinilla A., Gabriel; Rojas F., Gloria; Romero B., Franklin; Castillo, Tomas

2011-01-01

Los suelos de la Isla Oorgona son Inceptisoles con buena a baja saturación de bases (Eutropepts y Dystropepts respectivamente). con tendencia a ser ácidos y buena capacidad de intercambio catíóníco, Domina en ellos la textura arcillosa; el contenido de materia orgánica es alto en los horizontes
O y A. razón por la cual predominan. en la fauna edáfica las formas de hábitos fltófagos y saprófagos. Los más  epresentativos de la fauna interna del suelo (O a 40 cm) son Insecta y Annelid...

Morphological support for the phylogenetic positioning of Pentastomida and related fossils

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Elaine Christine Costa Eloy

2008-09-01

Full Text Available Pentastomida is a group of parasites that infects the respiratory tracts of vertebrates. They have a mixture of annelid and arthropod characteristics. For that reason, the phylogenetic relationships of the pentastomids have been controversial in proposals of metazoan phylogeny. Forty-seven characters were selected for the analyses of the taxa Annelida, Arthropoda, Kinorhyncha, Loricifera, Nematoda, Nematomorpha, Onychophora, Pentastomida, Priapulida and Tardigrada. The analyses with PAUP resulted in a single shortest cladogram (length 89, ci 0.78, ri 0.86. Our results indicate that Pentastomida is a transitional group between the Arthropoda and some of the Nemathelminth groups such as Nematoda and Nematomorpha.

Utilizing thin-film solid-phase extraction to assess the effect of organic carbon amendments on the bioavailability of DDT and dieldrin to earthworms

Science.gov (United States)

Andrade, Natasha A.; Centofanti, Tiziana; McConnell, Laura L.; Hapeman, Cathleen J.; Torrents, Alba; Anh, Nguyen; Beyer, W. Nelson; Chaney, Rufus L.; Novak, Jeffrey M.; Anderson, Marya O.; Cantrell, Keri B.

2014-01-01

Improved approaches are needed to assess bioavailability of hydrophobic organic compounds in contaminated soils. Performance of thin-film solid-phase extraction (TF-SPE) using vials coated with ethylene vinyl acetate was compared to earthworm bioassay (Lumbricus terrestris). A DDT and dieldrin contaminated soil was amended with four organic carbon materials to assess the change in bioavailability. Addition of organic carbon significantly lowered bioavailability for all compounds except for 4,4′-DDT. Equilibrium concentrations of compounds in the polymer were correlated with uptake by earthworms after 48d exposure (R2 = 0.97; p 40yr of aging. Results show that TF-SPE can be useful in examining potential risks associated with contaminated soils and to test effectiveness of remediation efforts.

Second contribution to the knowledge of earthworms (Lumbricidae in Montenegro

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Stojanović Mirjana M.

2003-01-01

Full Text Available This paper contains the results of qualitative analysis of Lumbricidae (Oligochaeta in Montenegro, during the period 1997-2003. The research has included natural and cultivated biotopes. The presence of 15 species was established and the habitats, localities and their zoogeographical position are given. In Montenegro we found four species for the first time Dendrobaena jastrebensis, D. vejdovskyi, Octodrilus bretcheri and Lumbricus terrestris. The complete list of earthworm species in Montenegro includes 45 taxa. With respects to the zoogeographic situation of the earthworms in Montenegro, the largest number belongs to endemic (10 and European (10 species. But 8 taxa are south-European, 9 Holarctic, 7 cosmopolitan, and 1 Palearctic. The degree of endemism of the earthworm fauna of Montenegro is quite high, exceeding 22.2%.

Miniature excitatory synaptic ion currents in the earthworm Lumbricus terrestris body wall muscles

Czech Academy of Sciences Publication Activity Database

Volkov, E. M.; Nurullin, L. F.; Nikolsky, E.; Vyskočil, František

2007-01-01

Roč. 56, č. 5 (2007), s. 655-658 ISSN 0862-8408 R&D Projects: GA AV ČR(CZ) IAA5011411 Grant - others:RFBR(RU) 06-04-48458; Nsh(RU) 4444.2006.4 Institutional research plan: CEZ:AV0Z50110509 Keywords : ion currents * muscle cells * acetylcholine receptor Subject RIV: ED - Physiology Impact factor: 1.505, year: 2007

From mowing to grazing: Does the change in grassland management affect soil annelid assemblages?

Czech Academy of Sciences Publication Activity Database

Schlaghamerský, J.; Šídová, A.; Pižl, Václav

2007-01-01

Roč. 43, Suppl. 1 (2007), S72-S78 ISSN 1164-5563 R&D Projects: GA MŽP SE/620/11/03 Institutional research plan: CEZ:AV0Z60660521 Keywords : Lumbricidae * Enchytraeidae * Tubificidae Subject RIV: EH - Ecology, Behaviour Impact factor: 0.500, year: 2007

Influence of earthworms on the sulfur turnover in the soil.

Science.gov (United States)

Grethe, S; Schrader, S; Giesemann, A; Larink, O; Weigel, H J

1996-08-01

Abstract The effects of earthworm activity on the concentration and isotopic composition of total sulfur in soils was investigated using batch experiments. Two ecologically different lumbricid species, the anecic Lumbricus terrestris and the endogeic Aporrectodea caliginosa, were used. The earthworms were fed birch leaves, beech leaves, cattle manure or mixed plant litter. All food sources differed isotopically (δ(34)S) from the soil (Parabraunerde). As a reference, one experiment was carried out without additional food. The experimental results show, that both earthworm species influence the total S-content and the δ(34)S-values in the soil by digestion of the different food sources. The differences in the total S-content of the earthworm tissues and in the S-isotopic composition of the casts can be attributed to the ecological differences between the earthworm species.

Enhanced bioremoval of lead by earthworm-Lumbricus terrestris co-cultivated with bacteria-Klebsiella variicola.

Science.gov (United States)

Das, Anamika; Osborne, Jabez W

2017-10-01

Lead is a toxic heavy metal having devastating effects on the environment. The current study was focussed on bioremoval of lead using earthworm and lead resistant bacteria. Earthworms were subjected to various concentrations of lead in the soil bioaugmented with lead resistant bacteria (VITMVCJ1) to enhance the uptake of lead from the contaminated soil. Significant increase was observed in the length and body weight of the earthworms supplemented with lead resistant bacteria. Similarly, there was a substantial increase in the locomotion rate of the earthworms treated with lead resistant bacteria in comparison with the control. The gut micro flora of bacterial treated earthworms had increased number of bacterial cells than the untreated earthworms. The histopathological studies revealed the toxic effects of lead on the gut of earthworms indicating severe damage in lead resistant bacteria untreated worms, whereas the cells were intact in lead resistant bacteria treated worms. COMET assay showed increased DNA damage with higher tail DNA percent in the untreated earthworms. Further, the colonisation of the bacteria supplemented, onto the gut region of earthworms was observed by scanning electron microscopy. Atomic absorption spectrophotometry indicated a fair 50% uptake of lead within the biomass of earthworm treated with lead resistant bacteria. Copyright © 2017 Elsevier B.V. All rights reserved.

Oxygen binding properties of non-mammalian nerve globins

DEFF Research Database (Denmark)

Hundahl, Christian; Fago, Angela; Dewilde, Sylvia

2006-01-01

Oxygen-binding globins occur in the nervous systems of both invertebrates and vertebrates. While the function of invertebrate nerve haemoglobins as oxygen stores that extend neural excitability under hypoxia has been convincingly demonstrated, the physiological role of vertebrate neuroglobins...... is less well understood. Here we provide a detailed analysis of the oxygenation characteristics of nerve haemoglobins from an annelid (Aphrodite aculeata), a nemertean (Cerebratulus lacteus) and a bivalve (Spisula solidissima) and of neuroglobin from zebrafish (Danio rerio). The functional differences...... have been related to haem coordination: the haem is pentacoordinate (as in human haemoglobin and myoglobin) in A. aculeata and C. lacteus nerve haemoglobins and hexacoordinate in S. solidissima nerve haemoglobin and D. rerio neuroglobin. Whereas pentacoordinate nerve globins lacked Bohr effects at all...

High diversity in neuropeptide immunoreactivity patterns among three closely related species of Dinophilidae (Annelida)

DEFF Research Database (Denmark)

Kerbl, Alexandra; Conzelmann, Markus; Jékely, Gáspár

2017-01-01

Neuropeptides are conserved metazoan signaling molecules, and represent useful markers for comparative investigations on the morphology and function of the nervous system. However, little is known about the variation of neuropeptide expression patterns across closely related species in invertebrate...... groups other than insects. In this study, we compare the immunoreactivity patterns of 14 neuropeptides in three closely related microscopic dinophilid annelids (Dinophilus gyrociliatus, D. taeniatus and Trilobodrilus axi). The brains of all three species were found to consist of around 700 somata...... species. FMRFamide, MLD/pedal peptide, allatotropin, RNamide, excitatory peptide, and FVRIamide showed a broad localization within the brain, while calcitonin, SIFamide, vasotocin, RGWamide, DLamide, FLamide, FVamide, MIP, and serotonin were present in fewer cells in demarcated regions. The different...

Comparison of influences of sediments and sea water on accumulation of radionuclides by marine organisms

International Nuclear Information System (INIS)

Ueda, Taiji; Nakamura, Ryoichi; Suzuki, Yuzuru

1978-01-01

The concentration factors of 106 Ru- 106 Rh and 137 Cs for a marine bivalve and a alga were investigated. Furthermore, the transfer ratio ([cpm/g of organism]/[cpm/g of sediment]) of these nuclides from contaminated sediments to organisms was examined. Then the concentration factors were compared with the transfer ratio to know the relative influence of sea water and sediments on the contamination of marine organisms. The obtained figures, we call the biological factor of the sediments (BFS), were 70 and 160 for red alga and bivalve on 137 Cs, and 5400 and 2900 for them in case of 106 Ru- 106 Rh, respectively. These figures were comparable to those for annelid worm, 40 on 137 Cs and 1000 on 106 Ru- 106 Rh. (auth.)

Theory of epigenetic coding.

Science.gov (United States)

Elder, D

1984-06-07

The logic of genetic control of development may be based on a binary epigenetic code. This paper revises the author's previous scheme dealing with the numerology of annelid metamerism in these terms. Certain features of the code had been deduced to be combinatorial, others not. This paradoxical contrast is resolved here by the interpretation that these features relate to different operations of the code; the combinatiorial to coding identity of units, the non-combinatorial to coding production of units. Consideration of a second paradox in the theory of epigenetic coding leads to a new solution which further provides a basis for epimorphic regeneration, and may in particular throw light on the "regeneration-duplication" phenomenon. A possible test of the model is also put forward.

Penetration of Action Potentials During Collision in the Median and Lateral Giant Axons of Invertebrates

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Alfredo Gonzalez-Perez

2014-09-01

Full Text Available The collisions of two simultaneously generated impulses in the giant axons of both earthworms and lobsters propagating in orthodromic and antidromic direction are investigated. The experiments have been performed on the extracted ventral cords of Lumbricus terrestris and the abdominal ventral cord of a lobster, Homarus americanus, by using external stimulation and recording. The collision of two nerve impulses of orthodromic and antidromic propagation did not result in the annihilation of the two signals, contrary to the common notion that is based on the existence of a refractory period in the well-known Hodgkin-Huxley theory. However, the results are in agreement with the electromechanical soliton theory for nerve-pulse propagation, as suggested by Heimburg and Jackson [On Soliton Propagation in Biomembranes and Nerves, Proc. Natl. Acad. Sci. U.S.A. 102, 9790 (2005.].

Toxicity of zinc oxide nanoparticles to the annelid Enchytraeus crypticus in agar-based exposure media

Czech Academy of Sciences Publication Activity Database

Hrdá, K.; Opršál, J.; Knotek, P.; Pouzar, M.; Vlček, Milan

2016-01-01

Roč. 70, č. 11 (2016), s. 1512-1520 ISSN 0366-6352 Institutional support: RVO:61389013 Keywords : terrestrial ecotocicity test * zinc ocide nanoparticles * potworm Subject RIV: DJ - Water Pollution ; Quality Impact factor: 1.258, year: 2016

The effects of polycyclic aromatic hydrocarbons and heavy metals on terrestrial annelids in urban soils

Czech Academy of Sciences Publication Activity Database

Pižl, Václav; Schlaghamerský, J.; Tříska, Jan

2009-01-01

Roč. 44, č. 8 (2009), s. 1050-1055 ISSN 0100-204X R&D Projects: GA AV ČR IAA600660608 Institutional research plan: CEZ:AV0Z60660521; CEZ:AV0Z60870520 Keywords : Enchytraeidae * Lumbricidae * soil pollution Subject RIV: EH - Ecology, Behaviour Impact factor: 0.681, year: 2009

Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.

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Ping Gong

Full Text Available High density oligonucleotide probe arrays have increasingly become an important tool in genomics studies. In organisms with incomplete genome sequence, one strategy for oligo probe design is to reduce the number of unique probes that target every non-redundant transcript through bioinformatic analysis and experimental testing. Here we adopted this strategy in making oligo probes for the earthworm Eisenia fetida, a species for which we have sequenced transcriptome-scale expressed sequence tags (ESTs. Our objectives were to identify unique transcripts as targets, to select an optimal and non-redundant oligo probe for each of these target ESTs, and to annotate the selected target sequences. We developed a streamlined and easy-to-follow approach to the design, validation and annotation of species-specific array probes. Four 244K-formatted oligo arrays were designed using eArray and were hybridized to a pooled E. fetida cRNA sample. We identified 63,541 probes with unsaturated signal intensities consistently above the background level. Target transcripts of these probes were annotated using several sequence alignment algorithms. Significant hits were obtained for 37,439 (59% probed targets. We validated and made publicly available 63.5K oligo probes so the earthworm research community can use them to pursue ecological, toxicological, and other functional genomics questions. Our approach is efficient, cost-effective and robust because it (1 does not require a major genomics core facility; (2 allows new probes to be easily added and old probes modified or eliminated when new sequence information becomes available, (3 is not bioinformatics-intensive upfront but does provide opportunities for more in-depth annotation of biological functions for target genes; and (4 if desired, EST orthologs to the UniGene clusters of a reference genome can be identified and selected in order to improve the target gene specificity of designed probes. This approach is particularly applicable to organisms with a wealth of EST sequences but unfinished genome.

Lethal and sub-lethal evaluation of Indigo Carmine dye and byproducts after TiO2 photocatalysis in the immune system of Eisenia andrei earthworms.

Science.gov (United States)

Genázio Pereira, Patrícia Christina; Reimão, Roberta Valoura; Pavesi, Thelma; Saggioro, Enrico Mendes; Moreira, Josino Costa; Veríssimo Correia, Fábio

2017-09-01

The Indigo carmine (IC) dye has been widely used in textile industries, even though it has been considered toxic for rats, pigs and humans. Owing to its toxicity, wastes containing this compound should be treated to minimize or eliminate their toxic effects on the biota. As an alternative to wastewater treatment, advanced oxidative processes (AOPs) have been highlighted due to their high capacity to destruct organic molecules. In this context, this study aimed to evaluate Indigo Carmine toxicity to soil organisms using the earthworm Eisenia andrei as a model-organism and also verify the efficiency of AOP in reducing its toxicity to these organisms. To this end, lethal (mortality) and sub-lethal (loss or gain of biomass, reproduction, behavior, morphological changes and immune system cells) effects caused by this substance and its degradation products in these annelids were evaluated. Morphological changes were observed even in organisms exposed to low concentrations, while mortality was the major effect observed in individuals exposed to high levels of indigo carmine dye. The organisms exposed to the IC during the contact test showed mortality after 72h of exposure (LC 50 = 75.79mgcm - 2 ), while those exposed to photoproducts showed mortality after 48h (LC 50 = 243min). In the chronic study, the organisms displayed a mortality rate of 14%, while those exposed to the photoproduct reached up to 32.7%. A negative influence of the dye on the reproduction rate was observed, while by-products affected juvenile survival. A loss of viability and alterations in the cellular proportion was verified during the chronic test. However, the compounds did not alter the behavior of the annelids in the leak test (RL ranged from 20% to 30%). Although photocatalysis has been presented as an alternative technology for the treatment of waste containing the indigo carmine dye, this process produced byproducts even more toxic than the original compounds to E. andrei. Copyright © 2017

The biogeochemistry of carbon in continental slope sediments: The North Carolina margin

Energy Technology Data Exchange (ETDEWEB)

Blair, N.; Levin, L.; DeMaster, D.; Plaia, G.; Martin, C.; Fornes, W.; Thomas, C.; Pope, R.

1999-12-01

The responses of the continental slope benthos to organic detritus deposition were studied with a multiple trace approach. Study sites were offshore of Cape Fear (I) and Cape Hatteras (III), N.C. (both 850 m water depth) and were characterized by different organic C deposition rates, macrofaunal densities (III>I in both cases) and taxa. Natural abundances of {sup 13}C and {sup 12}C in particulate organic carbon (POC), dissolved inorganic carbon (DIC) and macrofauna indicate that the reactive organic detritus is marine in origin. Natural abundance levels of {sup 14}C and uptake of {sup 13}C-labeled diatoms by benthic animals indicate that they incorporate a relatively young component of carbon into their biomass. {sup 13}C-labeled diatoms (Thalassiorsira pseudonana) tagged with {sup 210}Pb, slope sediment tagged with {sup 113}Sn and {sup 228}Th-labeled glass beads were emplaced in plots on the seafloor at both locations and the plots were sampled after 30 min., 1-1.5 d and 14 mo. At Site I, tracer diatom was intercepted at the surface primarily by protozoans and surface-feeding annelids. Little of the diatom C penetrated below 2 cm even after 14 months. Oxidation of organic carbon appeared to be largely aerobic. At Site III, annelids were primarily responsible for the initial uptake of tracer. On the time scale of days, diatom C was transported to a depth of 12 cm and was found in animals collected between 5-10 cm. The hoeing of tracer from the surface by the maldanid Praxillela sp. may have been responsible for some of the rapid nonlocal transport. Oxidation of the diatom organic carbon was evident to at least 10 cm depth. Anaerobic breakdown of organic matter is more important at Site III. Horizontal transport, which was probably biologically mediated, was an order of magnitude more rapid than vertical displacement over a year time scale. If the horizontal transport was associated with biochemical transformations of the organic matter, it may represent an

Copepod (Crustacea) emergence from soils from everglades marshes with different hydroperiods

Science.gov (United States)

Loftus, W.F.; Reid, J.W.

2000-01-01

During a severe drought period in the winter and spring of 1989, we made three collections of dried marsh soils from freshwater sloughs in Everglades National Park, Florida, at sites characterized by either long or intermediate annual periods of flooding (hydroperiod). After rehydrating the soils in aquaria, we documented the temporal patterns of copepod emergence over two-week periods. The species richness of copepods in the rehydrated soils was lower than in pre-drought samples from the same slough sites. Only six of the 16 species recorded from the Everglades emerged in the aquarium tests. The long hydroperiod site had a slightly different assemblage and higher numbers of most species than the intermediate-hydroperiod sites. More individuals and species emerged from the early dry-season samples compared with samples taken later in the dry season. The harpacticoid, Cletocamptus deitersi, and the cyclopoid, Microcyclops rubellus, were abundant at most sites. The cyclopoids - Ectocyclops phaleratus, Homocyclops ater, and Paracyclops chiltoni - are new records for the Everglades. We infer that 1) only a subset of Everglades copepod species can survive drought by resting in soils; and that 2) survival ability over time differs by species.

Selection of focal earthworm species as non-target soil organisms for environmental risk assessment of genetically modified plants.

Science.gov (United States)

van Capelle, Christine; Schrader, Stefan; Arpaia, Salvatore

2016-04-01

By means of a literature survey, earthworm species of significant relevance for soil functions in different biogeographical regions of Europe (Atlantic, Boreal, Mediterranean) were identified. These focal earthworm species, defined here according to the EFSA Guidance Document on the environmental risk assessment (ERA) of genetically modified plants, are typical for arable soils under crop rotations with maize and/or potatoes within the three regions represented by Ireland, Sweden and Spain, respectively. Focal earthworm species were selected following a matrix of four steps: Identification of functional groups, categorization of non-target species, ranking species on ecological criteria, and final selection of focal species. They are recommended as appropriate non-target organisms to assess environmental risks of genetically modified (GM) crops; in this case maize and potatoes. In total, 44 literature sources on earthworms in arable cropping systems including maize or potato from Ireland, Sweden and Spain were collected, which present information on species diversity, individual density and specific relevance for soil functions. By means of condensed literature data, those species were identified which (i) play an important functional role in respective soil systems, (ii) are well adapted to the biogeographical regions, (iii) are expected to occur in high abundances under cultivation of maize or potato and (iv) fulfill the requirements for an ERA test system based on life-history traits. First, primary and secondary decomposers were identified as functional groups being exposed to the GM crops. In a second step, anecic and endogeic species were categorized as potential species. In step three, eight anecic and endogeic earthworm species belonging to the family Lumbricidae were ranked as relevant species: Aporrectodea caliginosa, Aporrectodea rosea, Aporrectodea longa, Allolobophora chlorotica, Lumbricus terrestris, Lumbricus friendi, Octodrilus complanatus and

Lophotrochozoan mitochondrial genomes

Energy Technology Data Exchange (ETDEWEB)

Valles, Yvonne; Boore, Jeffrey L.

2005-10-01

Progress in both molecular techniques and phylogeneticmethods has challenged many of the interpretations of traditionaltaxonomy. One example is in the recognition of the animal superphylumLophotrochozoa (annelids, mollusks, echiurans, platyhelminthes,brachiopods, and other phyla), although the relationships within thisgroup and the inclusion of some phyla remain uncertain. While much ofthis progress in phylogenetic reconstruction has been based on comparingsingle gene sequences, we are beginning to see the potential of comparinglarge-scale features of genomes, such as the relative order of genes.Even though tremendous progress is being made on the sequencedetermination of whole nuclear genomes, the dataset of choice forgenome-level characters for many animals across a broad taxonomic rangeremains mitochondrial genomes. We review here what is known aboutmitochondrial genomes of the lophotrochozoans and discuss the promisethat this dataset will enable insight into theirrelationships.

A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate

DEFF Research Database (Denmark)

Bataillon, Thomas; Galtier, Nicolas; Bernard, Aurelien

2016-01-01

to climate change in a common annelid worm using a controlled replicated experiment where climatic conditions were manipulated in a natural setting. Analyzing the transcribed genome of 15 local populations, we found that about 12% of the genetic polymorphisms exhibit differences in allele frequencies......Whether species can respond evolutionarily to current climate change is crucial for the persistence of many species. Yet, very few studies have examined genetic responses to climate change in manipulated experiments carried out innatural field conditions. We examined the evolutionary response...... associated to changes in soil temperature and soil moisture. This shows an evolutionaryresponse to realistic climate change happening over short-time scale, and calls for incorporating evolution into modelspredicting future response of species to climate change. It also shows that designed climate change...

Fossil traces of the bone-eating worm Osedax in early Oligocene whale bones.

Science.gov (United States)

Kiel, Steffen; Goedert, James L; Kahl, Wolf-Achim; Rouse, Greg W

2010-05-11

Osedax is a recently discovered group of siboglinid annelids that consume bones on the seafloor and whose evolutionary origins have been linked with Cretaceous marine reptiles or to the post-Cretaceous rise of whales. Here we present whale bones from early Oligocene bathyal sediments exposed in Washington State, which show traces similar to those made by Osedax today. The geologic age of these trace fossils ( approximately 30 million years) coincides with the first major radiation of whales, consistent with the hypothesis of an evolutionary link between Osedax and its main food source, although older fossils should certainly be studied. Osedax has been destroying bones for most of the evolutionary history of whales and the possible significance of this "Osedax effect" in relation to the quality and quantity of their fossils is only now recognized.

The mitochondrial genome of phoronis architecta--Comparisons demonstrate that phoronids are lophotrochozoan protostomes

Energy Technology Data Exchange (ETDEWEB)

Helfenbein, Kevin G.; Boore, Jeffrey L.

2004-01-31

The proper reconstruction of the relationships among the animal phyla is central to interpreting patterns of animal evolution from the genomic level to the morphological level. This is true not only of the more speciose phyla, but also of smaller groups. We report here the nearly complete DNA sequence of the mitochondrial genome of the phoronid Phoronis architecta, which has a gene arrangement remarkably similar to that of a protostome animal, the chiton Katharina tunicata. Evolutionary analysis of both gene arrangements and inferred amino acid sequences of these taxa, along with those of three brachiopods and other diverse animals, strongly supports the hypothesis that lophophorates are part of the large group that includes mollusks and annelids, i.e., the Lophotrochozoa, and solidly refutes the alternative of their being deuterostomes.

Modernist architecture in Barcelona reveals a new trace fossil from the Miocene of Montjuïc (NE Spain)

Energy Technology Data Exchange (ETDEWEB)

Belaústegui, Z.; Belaústegui, A.

2017-11-01

A new ichnotaxon, Lapillitubus montjuichensis n. i gen. n. isp., is described from the middle Miocene (Serravallian) of Montjuïc mountain (Barcelona, northeastern Spain). This ichnotaxon consists of a horizontal to vertical, cylindrical burrow with an agglutinated lining exclusively composed of lithoclasts. Lapillitubus montjuichensis is interpreted as the result of the burrowing activity of a deposit- or suspension-feeding annelid worm. This new ichnotaxon extends the record of the informal group known as clast-armored or agglutinated trace fossils. In addition, since part of its type material is located in the blocks that make up the façades of several modernist buildings in the city of Barcelona, this new ichnotaxon highlights the importance of fossils in urban settings for those cases in which natural outcrops are reduced, restricted or even missing.

Modernist architecture in Barcelona reveals a new trace fossil from the Miocene of Montjuïc (NE Spain)

International Nuclear Information System (INIS)

Belaústegui, Z.; Belaústegui, A.

2017-01-01

A new ichnotaxon, Lapillitubus montjuichensis n. i gen. n. isp., is described from the middle Miocene (Serravallian) of Montjuïc mountain (Barcelona, northeastern Spain). This ichnotaxon consists of a horizontal to vertical, cylindrical burrow with an agglutinated lining exclusively composed of lithoclasts. Lapillitubus montjuichensis is interpreted as the result of the burrowing activity of a deposit- or suspension-feeding annelid worm. This new ichnotaxon extends the record of the informal group known as clast-armored or agglutinated trace fossils. In addition, since part of its type material is located in the blocks that make up the façades of several modernist buildings in the city of Barcelona, this new ichnotaxon highlights the importance of fossils in urban settings for those cases in which natural outcrops are reduced, restricted or even missing.

A study of radionuclide transfer between invertebrates and their marine sedimentary environment

International Nuclear Information System (INIS)

Amiard-Triquet, Claude.

1975-11-01

Exchanges between sediment and marine organisms were studied in some benthic marine invertebrates, especially Arenicola marina L. (an Annelid). Experiments were carried out on the transfer of 60 Co, 137 Cs and accessorily 59 Fe and 144 Ce. Water was the chief vector for benthic marine invertebrates. These invertebrates seemed to act mainly in sedimentary areas on the redistribution of adsorbed radionuclides within the sediment. Radioactive contamination of the invertebrates was affected by various physiological or ecological factors. Benthic marine invertebrates were then studied as links in food chains. The transfer of 60 Co was studied in three food chains or fractions of food chains. The procedure allowed interesting observations from the health protection point of view and more fundamental investigations on cobalt metabolism (regulation, excretion) in a mollusc, a crustacea and a teleost [fr

Discovery of methylfarnesoate as the annelid brain hormone reveals an ancient role of sesquiterpenoids in reproduction.

Science.gov (United States)

Schenk, Sven; Krauditsch, Christian; Frühauf, Peter; Gerner, Christopher; Raible, Florian

2016-11-29

Animals require molecular signals to determine when to divert resources from somatic functions to reproduction. This decision is vital in animals that reproduce in an all-or-nothing mode, such as bristle worms: females committed to reproduction spend roughly half their body mass for yolk and egg production; following mass spawning, the parents die. An enigmatic brain hormone activity suppresses reproduction. We now identify this hormone as the sesquiterpenoid methylfarnesoate. Methylfarnesoate suppresses transcript levels of the yolk precursor Vitellogenin both in cell culture and in vivo , directly inhibiting a central energy-costly step of reproductive maturation. We reveal that contrary to common assumptions, sesquiterpenoids are ancient animal hormones present in marine and terrestrial lophotrochozoans. In turn, insecticides targeting this pathway suppress vitellogenesis in cultured worm cells. These findings challenge current views of animal hormone evolution, and indicate that non-target species and marine ecosystems are susceptible to commonly used insect larvicides.

A new Fridericia species (Clitellata, Enchytraeidae and the enchytraeid fauna of the Őrség National Park (Hungary

Directory of Open Access Journals (Sweden)

Dózsa-Farkas, K.

2016-04-01

Full Text Available The enchytraeid fauna of the Őrség National Park (Western Hungary, hitherto unknown, was investigated in this study. 14 enchytraeid genera including 47 species and one other annelid worm (Hrabeiella periglandulata were identified. One enchytraeid species was found to be new to science and is described in this paper as Fridericia zicsii sp. nov. The new species is distinguishable based on both morphological characters and molecular data (mitochondrial cytochrome c oxidase subunit I, nuclear histone 3 genes and nuclear ribosomal ITS region sequences from similar species. The enchytraeid fauna of Őrség NP indicated well the subalpine nature of this area. The most species-rich site was the hay meadow (32 species and interestingly, the species number in the Sphagnum bog of Szőce was unusually high (19 species.

Expansion of TALE homeobox genes and the evolution of spiralian development.

Science.gov (United States)

Morino, Yoshiaki; Hashimoto, Naoki; Wada, Hiroshi

2017-12-01

Spiralians, including molluscs, annelids and platyhelminths, share a unique development process that includes the typical geometry of early cleavage and early segregation of cell fate in blastomeres along the animal-vegetal axis. However, the molecular mechanisms underlying this early cell fate segregation are largely unknown. Here, we report spiralian-specific expansion of the three-amino-acid loop extension (TALE) class of homeobox genes. During early development, some of these TALE genes are expressed in staggered domains along the animal-vegetal axis in the limpet Nipponacmea fuscoviridis and the polychaete Spirobranchus kraussii. Inhibition or overexpression of these genes alters the developmental fate of blastomeres, as predicted by the gene expression patterns. These results suggest that the expansion of novel TALE genes plays a critical role in the establishment of a novel cell fate segregation mechanism in spiralians.

Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

International Nuclear Information System (INIS)

Slizovskiy, Ilya B.; Kelsey, Jason W.

2010-01-01

Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

Influence of Soil Organic Matter Content on Abundance and Biomass of Earthworm (Oligochaeta: Lumbricidae Populations

Directory of Open Access Journals (Sweden)

Hristo Valchovski

2016-06-01

Full Text Available The current study explores the influence of soil organic matter content on abundance and biomass of earthworm communities. The observation was carried out on three type of soils: PellicVertisols (very fine texture, Cromi-Vertic Luvisols (fine texture and Calcaric Fluvisols (mediumtexture from the Balkan Peninsula (Bulgaria. The field experiment was provided on uncultivatedplots. In the studied area earthworm fauna comprises of four species: Aporrectodea rosea,Aporrectodea caliginosa, Lumbricus terrestris and Octolasion lacteum. We found peregrine lumbricidtaxa, which are widely distributed in European soils. Our study demonstrated that soil organicmatter has a positive effect on lumbricid populations. It was revealed that augmentation of soilorganic matter favours characteristics of earthworm communities. The soil organic matter contentand earthworm abundance are in strong positive correlation (r > 0.981. The same relationship wasrevealed between the biomass of lumbricid fauna and amount of soil organic matter (r > 0.987. Insum, the soil organic matter could be used as an indicator for earthworm communities inuncultivated soils.

Sterilization affects soil organic matter chemistry and bioaccumulation of spiked p,p'-DDE and anthracene by earthworms

Energy Technology Data Exchange (ETDEWEB)

Kelsey, Jason W., E-mail: kelsey@muhlenberg.ed [Program in Environmental Science and Department of Chemistry, Muhlenberg College, 2400 Chew Street, Allentown, PA 18104 (United States); Slizovskiy, Ilya B.; Peters, Richard D.; Melnick, Adam M. [Program in Environmental Science and Department of Chemistry, Muhlenberg College, 2400 Chew Street, Allentown, PA 18104 (United States)

2010-06-15

Laboratory experiments were conducted to assess the effects of soil sterilization on the bioavailability of spiked p,p'-DDE and anthracene to the earthworms Eisenia fetida and Lumbricus terrestris. Physical and chemical changes to soil organic matter (SOM) induced by sterilization were also studied. Uptake of both compounds added after soil was autoclaved or gamma irradiated increased for E. fetida. Sterilization had no effect on bioaccumulation of p,p'-DDE by L. terrestris, and anthracene uptake increased only in gamma-irradiated soils. Analyses by FT-IR and DSC indicate sterilization alters SOM chemistry and may reduce pollutant sorption. Chemical changes to SOM were tentatively linked to changes in bioaccumulation, although the effects were compound and species specific. Artifacts produced by sterilization could lead to inaccurate risk assessments of contaminated sites if assumptions derived from studies carried out in sterilized soil are used. Ultimately, knowledge of SOM chemistry could aid predictions of bioaccumulation of organic pollutants. - Soil sterilization affects soil organic matter chemistry and pollutant bioaccumulation.

Benthos of Adjacent Mangrove, Seagrass and Non-vegetated Habitats in Rookery Bay, Florida, U.S.A.

Science.gov (United States)

Sheridan, P.

1997-04-01

Benthic faunal abundances and biomasses in adjacent mangrove, seagrass and non-vegetated mud habitats were compared in Rookery Bay, Florida, U.S.A. Although all habitats were intertidal, mangroves received the shortest duration of flooding, and non-vegetated mud received the longest. Replicate cores were taken at high tide in each habitat in July, September and December 1988, and in April 1989. Seagrass substrates were low organic content sands, whereas mangrove and non-vegetated substrates were high organic content sandy clays. Over 300 taxa were recorded, most of them relatively rare, and only 32 taxa were considered dominant (averaging ≥636 individuals m -2or five core -1in any habitat at a given time). Seagrass and non-vegetated mud faunas were more diverse than those of mangrove substrates. Total densities were always higher in red mangrove ( Rhizophora mangle) peat than elsewhere, averaging 22 591 to 52 914 individuals m -2. Densities in mixed seagrasses ranged between 6347 and 23 545 individuals m -2, while those in non-vegetated mud ranged between 3611 and 22 465 individuals m -2. Biomasses, however, were always higher in either seagrasses (15·7-87·4 g wet weight m -2) or non-vegetated mud (11·9-26·2 g m -2) than in mangroves (3·6-8·2 g m -2). Tanaids and annelids were the numerical dominants, reaching maximum densities of 35 127 and 31 388 m -2, respectively, in mangroves. Annelids were also the dominant biomass in most habitats each month. Variation in densities of most of the 32 dominant taxa were related to habitat not time. Each habitat harboured four to eight taxa that were significantly more abundant there than in alternate habitats. Feeding guild analysis indicated few differences among habitats, as surface deposit feeders and carnivores were predominant. Red mangrove appear capable of functioning in a manner similar to intertidal marsh habitats by providing high densities of small prey items for mobile consumers able to exploit the

Identification of two Nereis virens [Annelida: Polychaeta] cytochrome P450 enzymes and induction by xenobiotics

DEFF Research Database (Denmark)

Rewitz, Kim; Kjellerup, C; Jørgensen, A

2004-01-01

Nereis virens. These are the first CYP sequences reported in annelids. The deduced amino acid sequences both share highest identities to mammalian CYP4F enzymes (61% and 58%), indicating membership of the CYP4 family (accordingly, referred to as CYP41 and CYP42, respectively). The CYP42 gene expression...... was significantly higher in vehicle controls (corn oil) compared to untreated controls. Clofibrate increased the expression of the CYP42 genes. The induction by clofibrate and corn oil indicates regulatory similarities to vertebrate CYP4 enzymes, which are primarily involved in the metabolism of endogenous...... compounds such as fatty acids. Crude oil and benz(a)anthracene significantly induced CYP42 gene expression 2.6-fold, and because CYP enzymes often are induced by their own substrates, this induction may indicate involvement of N. virens CYP4 enzymes in the detoxification of environmental contaminants...

Assessment and rehabilitation of wildlife affected by an oil spill in Puerto Rico

International Nuclear Information System (INIS)

Mignucci-Giannoni, A.A.

1999-01-01

On 7 January 1994, the barge Morris J. Berman spilled approximately 3.6 million liters of oil off Punta Escambron in San Juan, Puerto Rico. This resulted in the contamination of extensive areas, impacting on natural resources along more than 48 km of Puerto Rico's north shore. Thousands of dead and alive oiled organisms washed ashore. Dead wildlife were collected opportunistically, and examined for the presence of oil and identified. Live wildlife was cleaned and treated at a temporary triage facility. A total of 5687 organisms of over 152 species were collected, including cnidarians, annelids, crustaceans, molluscs, echinoderms, fishes, birds and sea turtles. Molluscs and echinoderms were noticeably more affected than other species. Four species classified as endangered or threatened were also affected. A significant impact was observed on the live specimens presented for medical treatment, including shore crabs, birds and sea turtles. Only 63% of these were successfully rehabilitated. (author)

Multigene analysis of lophophorate and chaetognath phylogenetic relationships.

Science.gov (United States)

Helmkampf, Martin; Bruchhaus, Iris; Hausdorf, Bernhard

2008-01-01

Maximum likelihood and Bayesian inference analyses of seven concatenated fragments of nuclear-encoded housekeeping genes indicate that Lophotrochozoa is monophyletic, i.e., the lophophorate groups Bryozoa, Brachiopoda and Phoronida are more closely related to molluscs and annelids than to Deuterostomia or Ecdysozoa. Lophophorates themselves, however, form a polyphyletic assemblage. The hypotheses that they are monophyletic and more closely allied to Deuterostomia than to Protostomia can be ruled out with both the approximately unbiased test and the expected likelihood weights test. The existence of Phoronozoa, a putative clade including Brachiopoda and Phoronida, has also been rejected. According to our analyses, phoronids instead share a more recent common ancestor with bryozoans than with brachiopods. Platyhelminthes is the sister group of Lophotrochozoa. Together these two constitute Spiralia. Although Chaetognatha appears as the sister group of Priapulida within Ecdysozoa in our analyses, alternative hypothesis concerning chaetognath relationships could not be rejected.

Proteomic Changes between Male and Female Worms of the Polychaetous Annelid Neanthes arenaceodentata before and after Spawning

KAUST Repository

Chandramouli, Kondethimmanahalli; Ravasi, Timothy; Reish, Donald; Qian, Pei-Yuan

2013-01-01

The Neanthes acuminata species complex (Polychaeta) are cosmopolitan in distribution. Neanthes arenaceodentata, complex, has been widely used as toxicological test animal in the marine environment. Method of reproduction is unique in this polychaete complex. Same sexes fight and opposite sexes lie side by side until egg laying. Females lose about 75% of their weight and die after laying eggs. The male, capable of reproducing up to nine times, fertilizes the eggs and incubates the embryos for 3-4 weeks. The objective of this study was to determine if there is any set of proteins that influences this unique pattern of reproduction. Gel-based two-dimensional electrophoresis (2-DE) and gel-free quantitative proteomics methods were used to identify differential protein expression patterns before and after spawning in both male and female N. arenaceodentata. Males showed a higher degree of similarity in protein expression patterns but females showed large changes in phosphoproteme before and after spawning. There was a decrease (about 70%) in the number of detected phosphoproteins in spent females. The proteins involved in muscular development, cell signaling, structure and integrity, and translation were differentially expressed. This study provides proteomic insights of the male and female worms that may serve as a foundation for better understanding of unusual reproductive patterns in polychaete worms. © 2013 Chandramouli et al.

Proteomic Changes between Male and Female Worms of the Polychaetous Annelid Neanthes arenaceodentata before and after Spawning

KAUST Repository

Chandramouli, Kondethimmanahalli

2013-08-30

The Neanthes acuminata species complex (Polychaeta) are cosmopolitan in distribution. Neanthes arenaceodentata, complex, has been widely used as toxicological test animal in the marine environment. Method of reproduction is unique in this polychaete complex. Same sexes fight and opposite sexes lie side by side until egg laying. Females lose about 75% of their weight and die after laying eggs. The male, capable of reproducing up to nine times, fertilizes the eggs and incubates the embryos for 3-4 weeks. The objective of this study was to determine if there is any set of proteins that influences this unique pattern of reproduction. Gel-based two-dimensional electrophoresis (2-DE) and gel-free quantitative proteomics methods were used to identify differential protein expression patterns before and after spawning in both male and female N. arenaceodentata. Males showed a higher degree of similarity in protein expression patterns but females showed large changes in phosphoproteme before and after spawning. There was a decrease (about 70%) in the number of detected phosphoproteins in spent females. The proteins involved in muscular development, cell signaling, structure and integrity, and translation were differentially expressed. This study provides proteomic insights of the male and female worms that may serve as a foundation for better understanding of unusual reproductive patterns in polychaete worms. © 2013 Chandramouli et al.

Assessment and rehabilitation of wildlife affected by an oil spill in Puerto Rico

Energy Technology Data Exchange (ETDEWEB)

Mignucci-Giannoni, A.A. [University of Puerto Rico, San Juan (Puerto Rico). Caribbean Stranding Network

1999-10-01

On 7 January 1994, the barge Morris J. Berman spilled approximately 3.6 million liters of oil off Punta Escambron in San Juan, Puerto Rico. This resulted in the contamination of extensive areas, impacting on natural resources along more than 48 km of Puerto Rico`s north shore. Thousands of dead and alive oiled organisms washed ashore. Dead wildlife were collected opportunistically, and examined for the presence of oil and identified. Live wildlife was cleaned and treated at a temporary triage facility. A total of 5687 organisms of over 152 species were collected, including cnidarians, annelids, crustaceans, molluscs, echinoderms, fishes, birds and sea turtles. Molluscs and echinoderms were noticeably more affected than other species. Four species classified as endangered or threatened were also affected. A significant impact was observed on the live specimens presented for medical treatment, including shore crabs, birds and sea turtles. Only 63% of these were successfully rehabilitated. (author)

Assessment and rehabilitation of wildlife affected by an oil spill in Puerto Rico

Energy Technology Data Exchange (ETDEWEB)

Mignucci-Giannoni, A.A. [University of Puerto Rico, San Juan (Puerto Rico). Caribbean Stranding Network

1999-07-01

On 7 January 1994, the barge Morris J. Berman spilled approximately 3.6 million liters of oil off Punta Escambron in San Juan, Puerto Rico. This resulted in the contamination of extensive areas, impacting on natural resources along more than 48 km of Puerto Rico's north shore. Thousands of dead and alive oiled organisms washed ashore. Dead wildlife were collected opportunistically, and examined for the presence of oil and identified. Live wildlife was cleaned and treated at a temporary triage facility. A total of 5687 organisms of over 152 species were collected, including cnidarians, annelids, crustaceans, molluscs, echinoderms, fishes, birds and sea turtles. Molluscs and echinoderms were noticeably more affected than other species. Four species classified as endangered or threatened were also affected. A significant impact was observed on the live specimens presented for medical treatment, including shore crabs, birds and sea turtles. Only 63% of these were successfully rehabilitated. (author)

Food preference of red devil (Amphilophus labiatus) in the Sermo Reservoir, Kulon Progo Regency

Science.gov (United States)

Ariasari, A.; Helmiati, S.; Setyobudi, E.

2018-03-01

Food preference is one of the important information that can be used to know the food chain in order to manage fisheries resources. This study aims to determine the food habits and preference of red devil (Amphilophus labiatus) in the Sermo Reservoir, Kulon Progo Regency. Samples were collected randomly each month from September 2013 to February 2014. Each sample collected was measured its total length, body weight, and determined sex, then dissected to measure the gut length and to observe gut contents. Results showed that red devil is omnivorous (relative gut length = 3.83) with food composition consisted of fish, crustaceans, detritus, phytoplankton, zooplankton, plants, insects, insect’s larvae, Chironomus sp., and annelids. A change occurred in the food preference of red devil, i.e. the young fish prefers to feed Chironomus sp. larvae (86.02 %) whereas the adult fish prefers fish/fish chunk (81.82 %). Trophic level status of red devil showed as carnivorous and niche overlapping between male and female of the adult.

Symbiosis insights through metagenomic analysis of a microbialconsortium

Energy Technology Data Exchange (ETDEWEB)

Woyke, Tanja; Teeling, Hanno; Ivanova, Natalia N.; Hunteman,Marcel; Richter, Michael; Gloeckner, Frank Oliver; Boffelli, Dario; Barry, Kerrie W.; Shapiro, Harris J.; Anderson, Iain J.; Szeto, Ernest; Kyrpides, Nikos C.; Mussmann, Marc; Amann, Rudolf; Bergin, Claudia; Ruehland, Caroline; Rubin, Edward M.; Dubilier, Nicole

2006-09-01

Symbioses between bacteria and eukaryotes are ubiquitous, yet our understanding of the interactions driving these associations is hampered by our inability to cultivate most host-associated microbes. Here, we used a metagenomic approach to describe four co-occurring symbionts from the marine oligochaete Olavius algarvensis, a worm lacking a mouth, gut, and nephridia. Shotgun sequencing and metabolic pathway reconstruction revealed that the symbionts are sulfur-oxidizing and sulfate-reducing bacteria, all of which are capable of carbon fixation, providing the host with multiple sources of nutrition. Molecular evidence for the uptake and recycling of worm waste products by the symbionts suggests how the worm could eliminate its excretory system, an adaptation unique among annelid worms. We propose a model which describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments which it inhabits.

Associated fauna and effects of epibiotic barnacles on the relative growth and reproductive indices of Stramonita haemastoma (Gastropoda: Muricidae

Directory of Open Access Journals (Sweden)

Tahani El Ayari

2015-06-01

Full Text Available To better understand the impacts of biofouling on the biological processes of the basibiont, the effects of epibiotic barnacles on the relative growth and reproductive indices of Stramonita haemastoma (Linnaeus, 1767 were assessed. A total of 1035 specimens were collected monthly for one year from Bizerta Channel (northern Tunisia. Endobiotic species comprised the lithophagous bivalves Lithophaga aristata and Rocellaria dubia of different sizes, communicating with the outside through tiny perforations. Intra-shell tunnels and galleries also sheltered annelids and sipunculids. Epibiotic species comprised algae and highly diversified invertebrates represented by crustaceans, polychaetes, molluscs, echinoderms, ascidians, sponges, bryozoans and sipunculids, with barnacles being the most common group. Comparison of growth features between non-fouled and fouled S. haemastoma revealed higher growth in non-fouled specimens. Differences in reproductive condition indices were detected in few months, being mostly higher in non-fouled snails, but showed no asynchrony in the spawning period for either fouled or non-fouled gastropods hosts.

Metagenomic Analysis of Microbial Symbionts in a Gutless Worm

Energy Technology Data Exchange (ETDEWEB)

Woyke, Tanja; Teeling, Hanno; Ivanova, Natalia N.; Hunteman, Marcel; Richter, Michael; Gloeckner, Frank Oliver; Boeffelli, Dario; Barry, Kerrie W.; Shapiro, Harris J.; Anderson, Iain J.; Szeto, Ernest; Kyrpides, Nikos C.; Mussmann, Marc; Amann, Rudolf; Bergin, Claudia; Ruehland, Caroline; Rubin, Edward M.; Dubilier, Nicole

2006-05-01

Symbioses between bacteria and eukaryotes are ubiquitous, yet our understanding of the interactions driving these associations is hampered by our inability to cultivate most host-associated microbes. Here we use a metagenomic approach to describe four co-occurring symbionts from the marine oligochaete Olavius algarvensis, a worm lacking a mouth, gut and nephridia. Shotgun sequencing and metabolic pathway reconstruction revealed that the symbionts are sulphur-oxidizing and sulphate-reducing bacteria, all of which are capable of carbon fixation, thus providing the host with multiple sources of nutrition. Molecular evidence for the uptake and recycling of worm waste products by the symbionts suggests how the worm could eliminate its excretory system, an adaptation unique among annelid worms. We propose a model that describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments that it inhabits.

Dependency of soil activity concentration on soil -biota concentration ratio of radionuclides for earthworm

Energy Technology Data Exchange (ETDEWEB)

Keum, Dong Kwon; Kim, Byeong Ho; Jun, In; Lim, Kwang Muk; Choi, Yong Ho [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2012-05-15

The transfer of radionuclides to wildlife (non-human biota) is normally quantified using an equilibrium concentration ratio (CR{sub eq}), defined as the radionuclide activity concentration in the whole organism (fresh weight) divided by that in the media (dry weight for soil). The present study describes the effect of soil radionuclide activity concentration on the transfer of {sup 137}Cs, {sup 85}Sr and {sup 65}Zn to a functionally important wildlife group, annelids, using a commonly studied experimental worm (E.andrei). Time-dependent whole body concentration ratios of {sup 137}Cs, {sup 85}Sr and {sup 65}Zn for the earthworm were experimentally measured for artificially contaminated soils with three different activity concentrations for each radionuclide which were considerably higher than normal background levels. Two parameters of a first order kinetic model, the equilibrium concentration ratio (CR{sub eq}) and the effective loss rate constant (k), were estimated by comparison of experimental CR results with the model prediction

Microbial diversity in Frenulata (Siboglinidae, Polychaeta) species from mud volcanoes in the Gulf of Cadiz (NE Atlantic).

Science.gov (United States)

Rodrigues, Clara F; Hilário, Ana; Cunha, Marina R; Weightman, Andrew J; Webster, Gordon

2011-06-01

Frenulates are a group of gutless marine annelids belonging to the Siboglinidae that are nutritionally dependent upon endosymbiotic bacteria. We have characterized the bacteria associated with several frenulate species from mud volcanoes in the Gulf of Cadiz by PCR-DGGE of bacterial 16S rRNA genes, coupled with analysis of 16S rRNA gene libraries. In addition to the primary symbiont, bacterial consortia (microflora) were found in all species analysed. Phylogenetic analyses indicate that the primary symbiont in most cases belongs to the Gammaproteobacteria and were related to thiotrophic and methanotrophic symbionts from other marine invertebrates, whereas members of the microflora were related to multiple bacterial phyla. This is the first molecular evidence of methanotrophic bacteria in at least one frenulate species. In addition, the occurrence of the same bacterial phylotype in different Frenulata species, from different depths and mud volcanoes suggests that there is no selection for specific symbionts and corroborates environmental acquisition as previously proposed for this group of siboglinids.

Sub-lethal cadmium exposure increases phytochelatin concentrations in the aquatic snail Lymnaea stagnalis

Energy Technology Data Exchange (ETDEWEB)

SF, Gonçalves [Department of Biology & CESAM, Centre for Environmental and Marine Studies, University of Aveiro, 3810-193 Aveiro (Portugal); SK, Davies [Department of Surgery and Cancer, Imperial College London, Sir Alexander Fleming Building, London SW7 2AZ (United Kingdom); Bennett, M. [Department of Life Sciences, Imperial College London, Sir Alexander Fleming Building, London SW7 2AZ (United Kingdom); Raab, A.; Feldmann, J. [TESLA, Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland (United Kingdom); Kille, P. [Cardiff School of Biosciences, Cardiff University, Park Place, Cardiff CF10 3US (United Kingdom); Loureiro, S. [Department of Biology & CESAM, Centre for Environmental and Marine Studies, University of Aveiro, 3810-193 Aveiro (Portugal); DJ, Spurgeon [Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Wallingford OX10 8BB (United Kingdom); JG, Bundy, E-mail: j.bundy@imperial.ac.uk [Department of Surgery and Cancer, Imperial College London, Sir Alexander Fleming Building, London SW7 2AZ (United Kingdom)

2016-10-15

Phytochelatins are metal-binding metabolites found in almost all plant species and some animal groups, including nematodes and annelids, where they can play an important role in detoxifying metals such as cadmium. Species from several other taxa contain a phytochelatin synthase (PCS) gene orthologue, including molluscs, indicating they may have the potential to synthesize phytochelatins. However, the presence of a gene alone does not demonstrate that it plays a functional role in metal detoxification. In the present study, we show that the aquatic snail Lymnaea stagnalis produced both penta- and heptapeptide phytochelatins (i.e. phytochelatin-2 and phytochelatin-3), and their levels increased in response to sub-lethal levels of cadmium. - Highlights: • Little is known about the role of phytochelatins in metal detoxification in animals. • We detected phytochelatins (PC{sub 2} and PC{sub 3}) in a mollusc species, Lymnaea stagnalis. • Phytochelatins increased in Lymnaea stagnalis when exposed to cadmium. • Future research on phytochelatin responses in molluscs would be valuable.

Multi-species interactions impact the accumulation of weathered 2,2-bis (p-chlorophenyl)-1,1-dichloroethylene (p,p'-DDE) from soil

International Nuclear Information System (INIS)

Kelsey, Jason W.; White, Jason C.

2005-01-01

The impact of interactions between the earthworms Eisenia foetida and Lumbricus terrestris and the plants Cucurbita pepo and Cucurbita maxima on the uptake of weathered p,p'-DDE from soil was determined. Although some combinations of earthworm and plant species caused significant changes in the p,p'-DDE burden in both organisms, the effects were species specific. Contaminant bioconcentration in C. pepo was increased slightly by E. foetida and by 3-fold when the plant was grown with L. terrestris. E. foetida had no effect on the contaminant BCF by C. maxima, but L. terrestris caused a 2-fold reduction in p,p'-DDE uptake by the plant. Contaminant levels in E. foetida and L. terrestris were unaffected by C. pepo. When grown with C. maxima, the concentration of p,p'-DDE decreased by approximately 4-fold and 7-fold in E. foetida and L. terrestris, respectively. The data suggest that the prediction of contaminant bioavailability should consider interactions among species. - Interactions between earthworms and plants affect both the phytoextraction and bioaccumulation of p,p'-DDE in soil

Visualization of enzyme activities inside earthworm pores

Science.gov (United States)

Hoang, Duyen; Razavi, Bahar S.

2015-04-01

In extremely dynamic microhabitats as bio-pores made by earthworm, the in situ enzyme activities are assumed as a footprint of complex biotic interactions. Our study focused on the effect of earthworm on the enzyme activities inside bio-pores and visualizing the differences between bio-pores and earthworm-free soil by zymography technique (Spohn and Kuzyakov, 2013). For the first time, we aimed at quantitative imaging of enzyme activities in bio-pores. Lumbricus terrestris L. was placed into transparent box (15×20×15cm). After two weeks when bio-pore systems were formed by earthworms, we visualized in situ enzyme activities of five hydrolytic enzymes (β-glucosidase, cellobiohydrolase, chitinase, xylanase, leucine-aminopeptidase, and phosphatase. Zymography showed higher activity of β-glucosidase, chitinase, xylanase and phosphatase in biopores comparing to bulk soil. However, the differences in activity of cellobiohydrolase and leucine aminopeptidase between bio-pore and bulk soil were less pronounced. This demonstrated an applicability of zymography approach to monitor and to distinguish the in situ activity of hydrolytic enzymes in soil biopores.

Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

Energy Technology Data Exchange (ETDEWEB)

Slizovskiy, Ilya B. [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States); Kelsey, Jason W., E-mail: Kelsey@muhlenberg.ed [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States)

2010-10-15

Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

Menadione enhances oxyradical formation in earthworm extracts: vulnerability of earthworms to quinone toxicity

International Nuclear Information System (INIS)

Osman, A.M.; Besten, P.J. den; Noort, P.C.M. van

2003-01-01

NAD(P)H-cytochrome c reductase activities have been determined in the earthworms, L. rubellus and A. chlorotica, extracts. Menadione (0.35 mM, maximum concentration tested) was found to stimulate the rates of NADPH- and NADH-dependent cytochrome c reduction by three- and twofold, respectively. Superoxide dismutase (SOD) inhibited completely this menadione-mediated stimulation, suggesting that ·O 2 - is involved in the redox cycling of menadione. However, SOD had no effect on the basal activity (activity in the absence of quinone) in the case of NADH-dependent cytochrome c reduction, whereas it partially inhibited the basal activity of NADPH-cytochrome c reduction. This indicates direct electron transfer in the former case and the formation of superoxide anion in the latter. DT-diaphorase, measured as the dicumarol-inhibitable part of menadione reductase activity, was not detectable in the earthworms' extracts. In contrast, it was found that DT-diaphorase represents about 70% of the menadione reductase activities in the freshwater mussel, Dreissena polymorpha. The results of this work suggest that earthworms, compared with mussels, could be more vulnerable to oxidative stress from quinones due to lack, or very low level of DT-diaphorase, an enzyme considered to play a significant role in the detoxification of quinones. On the contrary, mussels have efficient DT-diaphorase, which catalyzes two-electron reduction of menadione directly to hydroquinone, thus circumventing the formation of semiquinone

Contribution of soil fauna to soil functioning in degraded environments: a multidisciplinary approach

Science.gov (United States)

Gargiulo, Laura; Mele, Giacomo; Moradi, Jabbar; Kukla, Jaroslav; Jandová, Kateřina; Frouz, Jan

2016-04-01

The restoration of the soil functions is essential for the recovery of highly degraded sites and, consequently, the study of the soil fauna role in the soil development in such environments has great potential from a practical point of view. The soils of the post-mining sites represent unique models for the study of the natural ecological succession because mining creates similar environments characterized by the same substrate, but by different ages according to the year of closure of mines. The aim of this work was to assess the contribution of different species of macrofauna on the evolution of soil structure and on the composition and activity of the microbial community in soil samples subjected to ecological restoration or characterized by spontaneous ecological succession. For this purpose, an experimental test was carried out in two sites characterized by different post-mining conditions: 1) natural succession, 2) reclamation with planting trees. These sites are located in the post-mining area of Sokolov (Czech Republic). For the experimental test repacked soil cores were prepared in laboratory with sieved soil sampled from the two sites. The soil cores were prepared maintaining the sequence of soil horizons present in the field. These samples were inoculated separately with two genera of earthworms (Lumbricus and Aporrectodea) and two of centipedes (Julida and Polydesmus). In particular, based on their body size, were inoculated for each cylinder 2 individuals of millipedes, 1 individual of Lumbricus and 4 individuals of Aporrectodea. For each treatment and for control samples 5 replicates were prepared and all samples were incubated in field for 1 month in the two original sampling sites. After the incubation the samples were removed from the field and transported in laboratory in order to perform the analysis of microbial respiration, of PLFA (phospholipid-derived fatty acids) and ergosterol contents and finally for the characterization of soil structure

The potential role of earthworms in toxicity assessment of terrestrial hazardous waste sites

Energy Technology Data Exchange (ETDEWEB)

Goven, A.J.; Fitzpatrick, L.C. [Univ. of North Texas, Denton, TX (United States); Venables, B.J. [TRAC Labs., Inc., Denton, TX (United States)

1994-12-31

Understanding the toxic potential and mechanisms of action of environmental xenobiotics is fundamental for assessing risk to public and environmental health. Current established protocols with earthworms focus primarily on defining the lethal effects of chemicals associated with soil contamination. Development of sublethal assays, until recently, has been largely ignored. Here the authors develop rationale for use of earthworms as a model organism for comprehensive assessment of risks to higher wildlife from contaminated soils and hazardous waste sites. They present a panel of lethal (LC/LD50`s) and sublethal measurement endpoint biomarkers, developed within the framework of the National Toxicology Program`s tiered immunotoxicity protocol for mice and according to published criteria for good measurement endpoints, that represent sensitive phylogenetically-conserved processes. Specifically the authors discuss immunosuppressive effects of terrestrial heavy metal and organic contamination on the innate, nonspecific and specific immune responses of earthworm, Lumbricus terrestris, coelomocytes in terms of total and differential cell counts, lysozyme activity, nitroblue tetrazolium dye reduction, phagocytic activity and secretary rosette formation. Findings indicate that sensitive phylogenetically conserved immune responses present in invertebrates can be used to assess or predict risk to wildlife from contaminated soils.

The European lesser glow worm, Phosphaenus hemipterus (Goeze, in North America (Coleoptera, Lampyridae

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Christopher Majka

2009-12-01

Full Text Available Phosphaenus hemipterus (Goeze is a Palaearctic glow worm (Coleoptera: Lampyridae, previously been reported in North America on the basis of two specimens; one collected in 1947 in Yarmouth, Nova Scotia; the other in 1989 in Montreal, Quebec. The present study newly records it from three sites in Halifax, Nova Scotia. One hundred and twenty six adult males and larvae were collected in 2009 in disturbed urban grassland areas, similar to habitats in England and Belgium where the species has been investigated. Experiments confirm that larvae feed on earthworms (Lumbricus terrestris, consistent with observations in Europe. The habitat is described, including vegetation, potential predators, and prey. Although ballast-shipments have previously been proposed as a vector for the species’ introduction to North America, the present study suggests that the importation of agricultural and horticultural products, which has lead to the introduction of many earthworms to the continent, could also serve as a conduit for the introduction of obligate earthworm predators such as the larvae of P. hemipterus. Although an adventive species, possible conservation concerns are discussed for a species that is considered endangered in parts of its native range.

Role and convergent evolution of competing RNA secondary structures in mutually exclusive splicing.

Science.gov (United States)

Yue, Yuan; Hou, Shouqing; Wang, Xiu; Zhan, Leilei; Cao, Guozheng; Li, Guoli; Shi, Yang; Zhang, Peng; Hong, Weiling; Lin, Hao; Liu, Baoping; Shi, Feng; Yang, Yun; Jin, Yongfeng

2017-10-03

Exon or cassette duplication is an important means of expanding protein and functional diversity through mutually exclusive splicing. However, the mechanistic basis of this process in non-arthropod species remains poorly understood. Here, we demonstrate that MRP1 genes underwent tandem exon duplication in Nematoda, Platyhelminthes, Annelida, Mollusca, Arthropoda, Echinodermata, and early-diverging Chordata but not in late-diverging vertebrates. Interestingly, these events were of independent origin in different phyla, suggesting convergent evolution of alternative splicing. Furthermore, we showed that multiple sets of clade-conserved RNA pairings evolved to guide species-specific mutually exclusive splicing in Arthropoda. Importantly, we also identified a similar structural code in MRP exon clusters of the annelid, Capitella teleta, and chordate, Branchiostoma belcheri, suggesting an evolutionarily conserved competing pairing-guided mechanism in bilaterians. Taken together, these data reveal the molecular determinants and RNA pairing-guided evolution of species-specific mutually exclusive splicing spanning more than 600 million years of bilaterian evolution. These findings have a significant impact on our understanding of the evolution of and mechanism underpinning isoform diversity and complex gene structure.

Bioerosion structures in high-salinity marine environments: Evidence from the Al-Khafji coastline, Saudi Arabia

Science.gov (United States)

El-Sorogy, Abdelbaset S.; Alharbi, Talal; Richiano, Sebastián

2018-05-01

Salinity is one the major stress factors that controls the biotic activities in marine environments. In general, the mixture with fresh-water has been mention as a great stress factor, but the opposite, i.e. high-salinity conditions, is less developed in the ichnological literature. Along the Al-Khafji coastline, Saudi Arabia, hard substrates (constituted by gastropods, bivalves and coral skeletons) contain diverse and abundant bioerosion traces and associated encrusters. Field and laboratory observations allowed the recognition of eight ichnospecies belong to the ichnogenera Gastrochaenolites, Entobia, Oichnus, Caulostrepsis and Trypanites, which can be attributed to various activities produced by bivalves, sponges, gastropods and annelids. The borings demonstrate two notable ichnological boring assemblages, namely, Entobia-dominated and Gastrochaenolites-dominated assemblages. The highly diversified bioerosion and encrustation in the studied hard organic substrate indicate a long exposition period of organic substrate with slow to moderate rate of deposition in a restricted (high-salinity) marine environment. This bioerosion study shows that high-salinity, at least for the study area, is not an important controlling factor for ichnology.

Environmental monitoring through the use of exposure panels

International Nuclear Information System (INIS)

Hillman, R.E.

1975-01-01

Exposure panels made of white pine with a transite facing are useful for assessing population and community changes in both polluted and unpolluted waters. Their uniform size and shape and the ease with which they can be handled makes them ideal for sampling a wide variety of sessile plants and animals, and those motile forms usually associated with sessile communities. Data from an ecological study at Millstone Point are used as examples of the kinds of information provided through the use of exposure panels as environmental monitors. Species diversity indexes for both algal and annelid populations as they occurred on panels from 1968 through 1973 were calculated. Regression analyses over time showed increases in diversity indexes since the program began, indicating possible changes in water quality. For the period of October 1971 through September 1972, the number of phyla found on panels exposed at Millstone Point, New Haven Harbor, and Stamford Harbor were not significantly different, but far more species were found on the Millstone Point panels. (U.S.)

Radiation sensitivity and gene expression in Enchytraeus japonensis, a species of earth worm

International Nuclear Information System (INIS)

Kubota, Yoshihisa

2011-01-01

The importance of radiological protection of the environment based on scientific principles is gaining international recognition as environment issues garner more attention. Earthworm (annelids) is a ubiquitous soil invertebrate known to play an important role in the maintenance of the soil ecosystem and thus selected as one of 12 kinds of reference animals and plants by the ICRP. In the present study, radiation sensitivity and gene expression in a recently described terrestrial oligochaete, Enchytraeus japonensis (E. japonensis) were studied. E. japonensis worms were acutely irradiated at increasing doses of gamma radiation, and the number of worms after 30 days of radiation was examined. The dose effectively inhibiting 50% of proliferation was approximately 22 Gy, which was comparable to the dose required to elicit growth inhibition in other earthworm species. In order to seek other biological endpoints for more sensitive and/or quicker assessment of radiation effects, gene expression profiling in E. japonensis was also performed, and poly (ADP-ribose) polymerase I (PARP I) was identified as a radiation-responsive gene. PARP I transcript level increased dose-dependently. (author)

Bone-eating Osedax worms lived on Mesozoic marine reptile deadfalls.

Science.gov (United States)

Danise, Silvia; Higgs, Nicholas D

2015-04-01

We report fossil traces of Osedax, a genus of siboglinid annelids that consume the skeletons of sunken vertebrates on the ocean floor, from early-Late Cretaceous (approx. 100 Myr) plesiosaur and sea turtle bones. Although plesiosaurs went extinct at the end-Cretaceous mass extinction (66 Myr), chelonioids survived the event and diversified, and thus provided sustenance for Osedax in the 20 Myr gap preceding the radiation of cetaceans, their main modern food source. This finding shows that marine reptile carcasses, before whales, played a key role in the evolution and dispersal of Osedax and confirms that its generalist ability of colonizing different vertebrate substrates, like fishes and marine birds, besides whale bones, is an ancestral trait. A Cretaceous age for unequivocal Osedax trace fossils also dates back to the Mesozoic the origin of the entire siboglinid family, which includes chemosynthetic tubeworms living at hydrothermal vents and seeps, contrary to phylogenetic estimations of a Late Mesozoic-Cenozoic origin (approx. 50-100 Myr). © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Coelomocytes: Biology and Possible Immune Functions in Invertebrates with Special Remarks on Nematodes

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Qudsia Tahseen

2009-01-01

Full Text Available All metazoans are exposed to a wide range of microbes and have evolved complex immune defenses used to repel infectious agents. Coelomocytes play a key role in the defense reactions of most invertebrates. They are involved in important immune functions, such as phagocytosis, encapsulation, graft rejection, and inflammation, as well as the synthesis and secretion of several humoral factors especially in annelids and echinoderms. Coelomocytes in nematodes are variable in shapes from round, ovoid, cuboidal, and spindle-shaped to stellate or branched cells that are found usually at fixed positions in the pseudocoelom. Their number usually varies from 2 to 6. The model nematode, C. elegans lacks an adaptive immune system and the coelomocytes are capable of endocytosis, but their involvement in phagocytosis of bacteria seems unlikely. The aim of this review is to evaluate current knowledge on coelomocytes of invertebrates with special reference to nematodes. The morphology and structure of these coelomocytes are discussed along with their origin. Their relative positions and diversity in different nematode groups have also been discussed and illustrated.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores

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Alan Kergunteuil

2016-11-01

Full Text Available Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes and invertebrates included among the macrofauna of soils (arthropods and annelids that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores.

Science.gov (United States)

Kergunteuil, Alan; Bakhtiari, Moe; Formenti, Ludovico; Xiao, Zhenggao; Defossez, Emmanuel; Rasmann, Sergio

2016-11-29

Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes) and invertebrates included among the macrofauna of soils (arthropods and annelids) that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests.

Reduction of nitrogen in the excretion on Japanese flounder using Ulva and Capitellid; Anaaosa to itogokai ni yoru hirame haisetsubutsuchu no chisso shori

Energy Technology Data Exchange (ETDEWEB)

Honda, H.; Kikuchi, K.; Sakaguchi, I. [Central Research Institute of Electric Power Industry, Tokyo (Japan)

1997-03-01

To develop the culture residue treatment technique using aquatic organisms, the ammonia and nitrate uptake rates of seaweed Ulva and the nitrogen reduction rate of polychaeta annelid Captella sp. with organic sediment predaceous ability were examined in the excretion of Japanese flounder. Nitrogen uptake rate of Ulva was affected by water temperature. It was highest at 20degC, followed at 15degC and 25degC in the order. It was not affected by light intensity between 1500 and 6000 lux. Ammonia and nitrate uptake rates by Ulva were estimated to be 28.2 and 14.6 {mu}g-N/g/h at 20degC under 3000 lux, respectively. Proportion of feces excreted from Capitellid to ingested sediments was 0.38. At 25degC, Capitellid population of one thousand individuals ingested-N at the rate of 24 mg-N/day, and excreted the feces-N of Capitellid at the rate of 7 mg-N/day. About 70% of nitrogen in the sediment was reduced through this process. 15 refs., 9 figs., 13 tabs.

Alien animals in South Africa – composition, introduction history, origins and distribution patterns

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Mike D. Picker

2017-03-01

Results: Of the 571 alien animal species analysed, insects comprised the largest component (53%, 300 species, followed by molluscs (9%, 51 species, annelids (8%, 48 species, arachnids (7%, 41 species, vertebrates (7%, 41 species and crustaceans (6%, 36 species. Vertebrate introductions (88% were largely intentional, whereas 84% of invertebrate introductions were unintentional. Conclusions: Almost all marine and most terrestrial alien species were accidentally introduced, whereas freshwater introductions were almost entirely intentional. Some 13% had not spread significantly, 16% had spread significantly and 71% had become fully invasive. Vertebrate introductions virtually ceased after the 1950s, but rate of introduction of invertebrates remained linear. The overall rate of species accumulation was fairly low until 1880, but accelerated sharply thereafter. Most terrestrial alien species originated from Europe (28.6% and Asia (25.0% and the lowest proportion (6.1% from Africa. Freshwater introductions largely originated from the Americas, with few from Africa. The most invaded areas were around Cape Town, (up to 162 introduced species/half-degree grid cell, followed by Gauteng and Durban

Metazoan meiofauna within the oxygen-minimum zone off Chile: Results of the 2001-PUCK expedition

Science.gov (United States)

Veit-Köhler, Gritta; Gerdes, Dieter; Quiroga, Eduardo; Hebbeln, Dierk; Sellanes, Javier

2009-07-01

A quantitative study of metazoan meiofauna was carried out at continental shelf and slope stations affected by the oxygen-minimum zone in the eastern South Pacific off Chile. Densities of meiobenthos at the investigated stations off Antofagasta (22°S), Concepción (36°S), and Chiloé (42°S) ranged from 1282.1 to 8847.8 ind 10 cm -2. Oxygen deficiency led only to average abundances, despite higher food availability and freshness at the corresponding sites. Sediment organic carbon, chlorophyll- a, and phaeopigment contents were used as measures of the input from water-column primary production, which accumulated at the oxygen-minimum zone stations. The highest abundances were found at a station with an oxygen content of 0.79 mL L -1, which was slightly elevated from what is defined as oxygen minimum (0.5 mL L -1). The most oxygenated site yielded the lowest densities. Meiofauna assemblages became more diverse with increasing bottom-water oxygenation, whereas nematodes were the most abundant taxon at every station, followed by annelids, copepods, and nauplii.

Long-term change in the megabenthos of the Porcupine Abyssal Plain (NE Atlantic)

Science.gov (United States)

Billett, D. S. M.; Bett, B. J.; Rice, A. L.; Thurston, M. H.; Galéron, J.; Sibuet, M.; Wolff, G. A.

A radical change in the abundance of invertebrate megafauna on the Porcupine Abyssal Plain is reported over a period of 10 years (1989-1999). Actiniarians, annelids, pycnogonids, tunicates, ophiuroids and holothurians increased significantly in abundance. However, there was no significant change in wet weight biomass. Two holothurian species, Amperima rosea and Ellipinion molle, increased in abundance by more than two orders of magnitude. Samples from the Porcupine Abyssal Plain over a longer period (1977-1999) show that prior to 1996 these holothurian species were always a minor component of the megafauna. From 1996 to 1999 A. rosea was abundant over a wide area of the Porcupine Abyssal Plain indicating that the phenomenon was not a localised event. Several dominant holothurian species show a distinct trend in decreasing body size over the study period. The changes in megafauna abundance may be related to environmental forcing (food supply) rather than to localised stochastic population variations. Inter-annual variability and long-term trends in organic matter supply to the seabed may be responsible for the observed changes in abundance, species dominance and size distributions.

Ecotoxicological evaluation of the short term effects of fresh and stabilized textile sludges before application in forest soil restoration

International Nuclear Information System (INIS)

Rosa, Edson V.C.; Giuradelli, Thayse M.; Correa, Albertina X.R.; Roerig, Leonardo R.; Schwingel, Paulo R.; Resgalla, Charrid; Radetski, Claudemir M.

2007-01-01

The short term (eco)toxicity potential of fresh and stabilized textile sludges, as well as the short term (eco)toxicity of leachates obtained from both fresh and stabilized textile sludges, was evaluated by a battery of toxicity tests carried out with bacteria, algae, daphnids, fish, earthworms, and higher plants. The (eco)toxicological results showed that, after 120 d of stabilization, the experimental loading ratio of 25% sludge:75% soil (v/v) (equivalent to 64.4 ton/ha) did not significantly increase toxicity effects and increased significantly the biomass yield for earthworms and higher plants. The rank of biological sensitivity endpoints was: Algae ∼ Plant biomass > Plant germination ∼ Daphnids > Bacteria ∼ Fish > Annelids. The lack of short term toxicity effects and the stimulant effect observed with higher plants and earthworms are good indications of the fertilizer/conditioner potential of this industrial waste, which after stabilization can be used in the restoration of a non-productive forest soil. - Short term ecotoxicity evaluation of textile sludge showed that stabilized sludge can be used in the restoration of a non-productive forest soil

Menadione enhances oxyradical formation in earthworm extracts: vulnerability of earthworms to quinone toxicity

Energy Technology Data Exchange (ETDEWEB)

Osman, A.M.; Besten, P.J. den; Noort, P.C.M. van

2003-10-08

NAD(P)H-cytochrome c reductase activities have been determined in the earthworms, L. rubellus and A. chlorotica, extracts. Menadione (0.35 mM, maximum concentration tested) was found to stimulate the rates of NADPH- and NADH-dependent cytochrome c reduction by three- and twofold, respectively. Superoxide dismutase (SOD) inhibited completely this menadione-mediated stimulation, suggesting that {center_dot}O{sub 2}{sup -} is involved in the redox cycling of menadione. However, SOD had no effect on the basal activity (activity in the absence of quinone) in the case of NADH-dependent cytochrome c reduction, whereas it partially inhibited the basal activity of NADPH-cytochrome c reduction. This indicates direct electron transfer in the former case and the formation of superoxide anion in the latter. DT-diaphorase, measured as the dicumarol-inhibitable part of menadione reductase activity, was not detectable in the earthworms' extracts. In contrast, it was found that DT-diaphorase represents about 70% of the menadione reductase activities in the freshwater mussel, Dreissena polymorpha. The results of this work suggest that earthworms, compared with mussels, could be more vulnerable to oxidative stress from quinones due to lack, or very low level of DT-diaphorase, an enzyme considered to play a significant role in the detoxification of quinones. On the contrary, mussels have efficient DT-diaphorase, which catalyzes two-electron reduction of menadione directly to hydroquinone, thus circumventing the formation of semiquinone.

Macrofauna of shallow hydrothermal vents on the Arctic Mid-Ocean Ridge at 71N

Science.gov (United States)

Schander, C.; Rapp, H. T.; Pedersen, R. B.

2007-12-01

Deep-sea hydrothermal vents are usually associated with a highly specialized fauna and since their discovery in 1977, more than 400 species of animals have been described. Specialized vent fauna includes various animal phyla, but the most conspicuous and well known are annelids, mollusks and crustaceans. We have investigated the fauna collected around newly discovered hydrothermal vents on the Mohns Ridge north of Jan Mayen. The venting fields are located at 71°N and the venting takes place within two main areas separated by 5 km. The shallowest vent area is at 500-550 m water depth and is located at the base of a normal fault. This vent field stretches approximately 1 km along the strike of the fault, and it is composed of 10-20 major vent sites each with multiple chimney constructions discharging up to 260°C hot fluids. A large area of diffuse, low- temperature venting occurs in the area surrounding the high-temperature field. Here, partly microbial mediated iron-oxide-hydroxide deposits are abundant. The hydrothermal vent sites do not show any high abundance of specialized hydrothermal vent fauna. Single groups (i.e. Porifera and Mollusca) have a few representatives but groups otherwise common in hydrothermal vent areas (e.g. vestimentifera, Alvinellid worms, mussels, clams, galathaeid and brachyuran crabs) are absent. Up until now slightly more than 200 species have been identified from the vent area. The macrofauna found in the vent area is, with few exceptions, an assortment of bathyal species known in the area. One endemic, yet undescribed, species of mollusc has been found so far, an gastropod related to Alvania incognita Warén, 1996 and A. angularis Warén, 1996 (Rissoidae), two species originally described from pieces of sunken wood north and south of Iceland. It is by far the most numerous mollusc species at the vents and was found on smokers, in the bacterial mats, and on the ferric deposits. A single specimen of an undescribed tanaidacean has also

Anelídeos poliquetos associados a um briozoário: II. Palmyridae Polychaetous annelids associated to a bryozoan: II. Palmyridae

Directory of Open Access Journals (Sweden)

Eloisa H Morgado

1981-06-01

Full Text Available Two species of Palmyridae were found in colonies of the bryozoan Schizoporella unicorns (Johnston: Bhawania brunea new for the science, and Chrysopetalum occidentale Johnson, cited for the first time for the Brazilian coast. These two species are described and their distribution is established. Bhawania brunea sp. nov. is conspicuously characterized by the structures on the prostomium and the configuration of the paleae.

Anelídeos poliquetos associados a um briozoário: III. Polynoidae Polychaetous annelids associated to a bryozoan: III. Polynoidae

Directory of Open Access Journals (Sweden)

Eloisa H Morgado

1981-06-01

Full Text Available Four species of Polynoidae, found in colonies of the bryozoan Schizoporella unicorns (Johnston, are here described. Among these Scalisetosus gracilis is a new species for science, and Halosdna glabra Hartman and Harmathöe macginitiei Pettibone, cited by the first time for Brazilian coast. Lepisdonotus caeruleus was the most abundant species of the family. Scalisetosus gracilis sp. nov. is characterized by the elytra with long and bifid papillae scattered on the surface as well as on external borders and distinct notosetae and neurosetae.

Utilizing thin-film solid-phase extraction to assess the effect of organic carbon amendments on the bioavailability of DDT and dieldrin to earthworms

International Nuclear Information System (INIS)

Andrade, Natasha A.; Centofanti, Tiziana; McConnell, Laura L.; Hapeman, Cathleen J.; Torrents, Alba; Nguyen, Anh; Beyer, W. Nelson; Chaney, Rufus L.; Novak, Jeffrey M.; Anderson, Marya O.; Cantrell, Keri B.

2014-01-01

Improved approaches are needed to assess bioavailability of hydrophobic organic compounds in contaminated soils. Performance of thin-film solid-phase extraction (TF-SPE) using vials coated with ethylene vinyl acetate was compared to earthworm bioassay (Lumbricus terrestris). A DDT and dieldrin contaminated soil was amended with four organic carbon materials to assess the change in bioavailability. Addition of organic carbon significantly lowered bioavailability for all compounds except for 4,4′-DDT. Equilibrium concentrations of compounds in the polymer were correlated with uptake by earthworms after 48d exposure (R 2 = 0.97; p 40yr of aging. Results show that TF-SPE can be useful in examining potential risks associated with contaminated soils and to test effectiveness of remediation efforts. -- Highlights: • Bioavailability of pesticides in soil were assessed using TF-SPE and earthworms. • Soil from a historical orchard was used to examine aged residues of dieldrin and DDT. • TF-SPE results were strongly correlated with earthworm bioaccumulation factors. • Ethylene vinyl acetate polymer has sorptive capacity similar to earthworm lipid. • TF-SPE useful to estimate bioavailability of hydrophobic organic pesticides in soil. -- Capsule A thin-film polymer sampler proved to be efficient in estimating the differences in bioavailability to earthworms in a soil treated with organic amendments

Plastic Bag Derived-Microplastics as a Vector for Metal Exposure in Terrestrial Invertebrates.

Science.gov (United States)

Hodson, Mark E; Duffus-Hodson, Calum A; Clark, Andy; Prendergast-Miller, Miranda T; Thorpe, Karen L

2017-04-18

Microplastics are widespread contaminants in terrestrial environments but comparatively little is known about interactions between microplastics and common terrestrial contaminants such as zinc (Zn). In adsorption experiments fragmented HDPE bags c. one mm 2 in size showed similar sorption characteristics to soil. However, when present in combination with soil, concentrations of adsorbed Zn on a per mass basis were over an order of magnitude lower on microplastics. Desorption of the Zn was minimal from both microplastics and soil in synthetic soil solution (0.01 M CaCl 2 ), but in synthetic earthworm guts desorption was higher from microplastics (40-60%) than soil (2-15%), suggesting microplastics could increase Zn bioavailability. Individual Lumbricus terrestris earthworms exposed for 28 days in mesocosms of 260 g moist soil containing 0.35 wt % of Zn-bearing microplastic (236-4505 mg kg -1 ) ingested the microplastics, but there was no evidence of Zn accumulation, mortality, or weight change. Digestion of the earthworms showed that they did not retain microplastics in their gut. These findings indicate that microplastics could act as vectors to increase metal exposure in earthworms, but that the associated risk is unlikely to be significant for essential metals such as Zn that are well regulated by metabolic processes.

Care of captive woodcocks

Science.gov (United States)

Stickel, William H.; Sheldon, William G.; Stickel, Lucille F.

1965-01-01

Numbers of American woodcocks (Philohela minor) were held in cages for experimental work lasting several months. Injuries caused by birds attempting to flush were greatly reduced by clipping feathers from one wing, by making cage walls opaque, and by using high cages or false ceilings of fabric. Size of cage was found not to be important, to judge from weight changes, so long as ample food was unmistakably available. Birds were kept in both large and small cages without social conflicts. Cages on the ground proved too unsanitary for long-term use; small steel cages with removable floors were practical but did not solve the sanitation problem. Living earthworms (Lumbricus terrestris) were provided daily in amounts roughly equal to weights of birds. Birds gained on this food when worms were offered in suitable ways. The feeding tray recommended is a large roasting pan with a snap-on metal rim that retards loss of worms. Trays contained moist peat in which birds probed for worms. Two efforts to keep woodcocks on a diet of red worms (Eisenia foetide) were unsuccessful; use of this worm was considered responsible. Woodcocks were handled and transported for short periods with least injury to them when they were rolled individually in soft bags.

Earthworms as vectors of Escherichia coli O157:H7 in soil and vermicomposts.

Science.gov (United States)

Williams, A Prysor; Roberts, Paula; Avery, Lisa M; Killham, Ken; Jones, David L

2006-10-01

Survival and movement of Escherichia coli O157:H7 in both soil and vermicompost is of concern with regards to human health. Whilst it is accepted that E. coli O157:H7 can persist for considerable periods in soils, it is not expected to survive thermophilic composting processes. However, the natural behavior of earthworms is increasingly utilized for composting (vermicomposting), and the extent to which earthworms promote the survival and dispersal of the bacterium within such systems is unknown. The faecal material produced by earthworms provides a ready supply of labile organic substrates to surrounding microbes within soil and compost, thus promoting microbial activity. Earthworms can also cause significant movement of organisms through the channels they form. Survival and dispersal of E. coli O157:H7 were monitored in contaminated soil and farmyard manure subjected to earthworm digestion over 21 days. Our findings lead to the conclusion that anecic earthworms such as Lumbricus terrestris may significantly aid vertical movement of E. coli O157 in soil, whereas epigeic earthworms such as Dendrobaena veneta significantly aid lateral movement within compost. Although the presence of earthworms in soil and compost may aid proliferation of E. coli O157 in early stages of contamination, long-term persistence of the pathogen appears to be unaffected.

Influence of flooding and metal immobilising soil amendments on availability of metals for willows and earthworms in calcareous dredged sediment-derived soils

Energy Technology Data Exchange (ETDEWEB)

Vandecasteele, Bart, E-mail: bart.vandecasteele@ilvo.vlaanderen.b [Institute for Agricultural and Fisheries Research (ILVO), Scientific Institute of the Flemish Government, Burg. Van Gansberghelaan 109, B-9820 Merelbeke (Belgium); Du Laing, Gijs [Ghent University, Department of Applied Analytical and Physical Chemistry, Coupure 653, B-9000 Ghent (Belgium); Lettens, Suzanna [Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Gaverstraat 4, B-9500 Geraardsbergen (Belgium); Jordaens, Kurt [Department of Biology, Evolutionary Biology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Tack, Filip M.G. [Ghent University, Department of Applied Analytical and Physical Chemistry, Coupure 653, B-9000 Ghent (Belgium)

2010-06-15

Soil amendments previously shown to be effective in reducing metal bioavailability and/or mobility in calcareous metal-polluted soils were tested on a calcareous dredged sediment-derived soil with 26 mg Cd/kg dry soil, 2200 mg Cr/kg dry soil, 220 mg Pb/kg dry soil, and 3000 mg Zn/kg dry soil. The amendments were 5% modified aluminosilicate (AS), 10% w/w lignin, 1% w/w diammonium phosphate (DAP, (NH{sub 4}){sub 2}HPO{sub 4}), 1% w/w MnO, and 5% w/w CaSO{sub 4}. In an additional treatment, the contaminated soil was submerged. Endpoints were metal uptake in Salix cinerea and Lumbricus terrestris, and effect on oxidation-reduction potential (ORP) in submerged soils. Results illustrated that the selected soil amendments were not effective in reducing ecological risk to vegetation or soil inhabiting invertebrates, as metal uptake in willows and earthworms did not significantly decrease following their application. Flooding the polluted soil resulted in metal uptake in S. cinerea comparable with concentrations for an uncontaminated soil. - Some soil amendments resulted in higher metal uptake by earthworms and willows than when the polluted soil was not amended but submersion of the polluted soil resulted in reduced Cd and Zn uptake in Salix cinerea.

Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils

Science.gov (United States)

Centofantia, Tiziana; McConnell, Laura L.; Chaney, Rufus L.; Beyer, W. Nelson; Andradea, Natasha A.; Hapeman, Cathleen J.; Torrents, Alba; Nguyen, Anh; Anderson, Marya O.; Novak, J. M.; Jackson, Dana

2015-01-01

Performance of compost and biochar amendments for in situ risk mitigation of aged DDT, DDE and dieldrin residues in an old orchard soil was examined. The change in bioavailability of pesticide residues to Lumbricus terrestris L. relative to the unamended control soil was assessed using 4-L soil microcosms with and without plant cover in a 48-day experiment. The use of aged dairy manure compost and biosolids compost was found to be effective, especially in the planted treatments, at lowering the bioavailability factor (BAF) by 18–39%; however, BAF results for DDT in the unplanted soil treatments were unaffected or increased. The pine chip biochar utilized in this experiment was ineffective at lower the BAF of pesticides in the soil. The US EPA Soil Screening Level approach was used with our measured values. Addition of 10% of the aged dairy manure compost reduced the average hazard quotient values to below 1.0 for DDT + DDE and dieldrin. Results indicate this sustainable approach is appropriate to minimize risks to wildlife in areas of marginal organochlorine pesticide contamination. Application of this remediation approach has potential for use internationally in areas where historical pesticide contamination of soils remains a threat to wildlife populations.

Dinosaur Footprints and Other Ichnofauna from the Cretaceous Kem Kem Beds of Morocco

Science.gov (United States)

Ibrahim, Nizar; Varricchio, David J.; Sereno, Paul C.; Wilson, Jeff A.; Dutheil, Didier B.; Martill, David M.; Baidder, Lahssen; Zouhri, Samir

2014-01-01

We describe an extensive ichnofossil assemblage from the likely Cenomanian-age ‘lower’ and ‘upper’ units of the ‘Kem Kem beds’ in southeastern Morocco. In the lower unit, trace fossils include narrow vertical burrows in cross-bedded sandstones and borings in dinosaur bone, with the latter identified as the insect ichnotaxon Cubiculum ornatus. In the upper unit, several horizons preserve abundant footprints from theropod dinosaurs. Sauropod and ornithischian footprints are much rarer, similar to the record for fossil bone and teeth in the Kem Kem assemblage. The upper unit also preserves a variety of invertebrate traces including Conichnus (the resting trace of a sea-anemone), Scolicia (a gastropod trace), Beaconites (a probable annelid burrow), and subvertical burrows likely created by crabs for residence and detrital feeding on a tidal flat. The ichnofossil assemblage from the Upper Cretaceous Kem Kem beds contributes evidence for a transition from predominantly terrestrial to marine deposition. Body fossil and ichnofossil records together provide a detailed view of faunal diversity and local conditions within a fluvial and deltaic depositional setting on the northwestern coast of Africa toward the end of the Cretaceous. PMID:24603467

C and N Stable Isotope Variability in Soft Tissue of Invasive Species Ficopomatus enigmaticus (Annelida, Polychaeta)

International Nuclear Information System (INIS)

Cukrov, Neven; Cukrov, Marijana; Lojen, Sonja

2011-01-01

Serpulidae Rafinesque, 1815 is a family of polychaete annelids with calcareous tubes found in worldwide from littoral to abyssal depths. Of more than 350 described species of serpulid polychaetes, Marifugia cavatica Absolon and Hrabe 1930 is the only known cave-dwelling stygobiotic and freshwater serpulid, five other serpulid species comprising the genus Ficopomatus are found in brackish water, otherwise serpulids are all marine organisms. Ficopomatus enigmaticus (Fauvel, 1923), previously known as Mercierella enigmatica, is a truly cosmopolitan with disjunct distribution. It has been found worldwide inhabiting coastal brackish waters, lagoons and estuaries of warm temperate areas of both hemispheres. This tubeworm builds calcareous tubes on any hard substrate. With distinctive collar-like rings at irregular intervals it is relatively easy to identify. It is an efficient suspension-feeder, very tolerant and physiologically well adapted to temperature and salinity variations, eutrophic conditions and low dissolved oxygen content. The fact that populations of F. enigmaticus appear near the ports suggests that the probable mechanism of introduction was ship fouling or ballast water. Generally, F. enigmaticus is considered as a fouling nuisance species which negatively affects ships, buoys and harbour structures.

Cell formation by myxozoan species is not explained by dogma

Science.gov (United States)

Morris, David J.

2010-01-01

Eukaryotes form new cells through the replication of nuclei followed by cytokinesis. A notable exception is reported from the class Myxosporea of the phylum Myxozoa. This assemblage of approximately 2310 species is regarded as either basal bilaterian or cnidarian, depending on the phylogenetic analysis employed. For myxosporeans, cells have long been regarded as forming within other cells by a process referred to as endogenous budding. This would involve a nucleus forming endoplasmic reticulum around it, which transforms into a new plasma membrane, thus enclosing and separating it from the surrounding cell. This remarkable process, unique within the Metazoa, is accepted as occurring within stages found in vertebrate hosts, but has only been inferred from those stages observed within invertebrate hosts. Therefore, I conducted an ultrastructural study to examine how internal cells are formed by a myxosporean parasitizing an annelid. In this case, actinospore parasite stages clearly internalized existing cells; a process with analogies to the acquisition of endosymbiotic algae by cnidarian species. A subsequent examination of the myxozoan literature did not support endogenous budding, indicating that this process, which has been a central tenet of myxozoan developmental biology for over a century, is dogma. PMID:20392735

Distributional patterns of shallow-water polychaetes in the Magellan region: a zoogeographical and ecological synopsis

Directory of Open Access Journals (Sweden)

Américo Montiel San Martín

2005-12-01

Full Text Available The zoogeography of polychaete annelids was described for the Magellan region. This work considered information available from 19 expeditions carried out in the last 124 years of polychaete taxonomic research around the southernmost tip of the South American continental shelf. The polychaete fauna of the Magellan region comprised a total of 431 species belonging to 108 genera and 41 families. MDS and ANOSIM analyses showed the Magellan region to be divided into two subregions, one on the Pacific side of the tip of South America and one on the Atlantic side. These subregions showed a low percentage of “endemic species” ( 70% of the species recorded for the whole Magellan region showed a wide distribution range, and there were especially high affinities with Antarctic and Subantarctic areas. We suggest that the opening of the Straits of Magellan created a new pathway for enhanced exchange of faunal elements between the Pacific and the Atlantic. Transport of larvae via easterly directed currents of the West Wind Drift plays an important role in current distribution patterns of polychaete fauna around the tip of South America.

Interplay between a Wnt-dependent organiser and the Notch segmentation clock regulates posterior development in Periplaneta americana

Directory of Open Access Journals (Sweden)

John E. Chesebro

2012-12-01

Sequential addition of segments in the posteriorly growing end of the embryo is a developmental mechanism common to many bilaterians. However, posterior growth and patterning in most animals also entails the establishment of a ‘posterior organiser’ that expresses the Caudal and Wnt proteins and has been proposed to be an ancestral feature of animal development. We have studied the functional relationships between the Wnt-driven organiser and the segmentation mechanisms in a basal insect, the cockroach Periplaneta americana. Here, posteriorly-expressed Wnt1 promotes caudal and Delta expression early in development to generate a growth zone from which segments will later bud off. caudal maintains the undifferentiated growth zone by dampening Delta expression, and hence Notch-mediated segmentation occurs just outside the caudal domain. In turn, Delta expression maintains Wnt1, maintaining this posterior gene network until all segments have formed. This feedback between caudal, Wnt and Notch-signalling in regulating growth and segmentation seems conserved in other arthropods, with some aspects found even in vertebrates. Thus our findings not only support an ancestral Wnt posterior organiser, but also impinge on the proposals for a common origin of segmentation in arthropods, annelids and vertebrates.

Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata

KAUST Repository

Chandramouli, Kondethimmanahalli; Reish, Donald; Zhang, Huoming; Qian, Pei-Yuan; Ravasi, Timothy

2015-01-01

The polychaetous annelid Neanthes acuminata complex has a widespread distribution, with the California population referred to as N. arenaceodentata. The reproductive pattern in this complex is unique, in that the female reproduces once and then dies, whereas the male can reproduce up to nine times. The male incubates the embryos until the larvae leave the male’s tube 21–28 days later and commences feeding. Reproductive success and protein expression patterns were measured over the nine reproductive periods. The percent success of the male in producing juveniles increased during the first three reproductive periods and then decreased, but the number of juveniles produced was similar through all nine periods. iTRAQ based quantitative proteomics were used to analyze the dynamics of protein expression patterns. The expression patterns of several proteins were found to be altered. The abundant expression of muscular and contractile proteins may have affected body weight and reproductive success. Sperm have never been observed; fertilization occurs within the parent’s tube. Proteins associated with sperm maturation and fertilization were identified, including ATPase, clathrin, peroxiredoxins and enolase, which may provide clues to the molecular mechanisms enabling males to reproduce multiple times.

IMPACT OF HEAVY METALS CONTAMINATION ON SPRING ABUNDANCE OF AQUATIC MACRO-INVERTEBRATES INHABITING LAKE TIMSAH, EGYPT

Directory of Open Access Journals (Sweden)

Marwa Ibrahim Saad El-Din

2017-04-01

Full Text Available Lake Timsah, Egypt receives several kinds of pollutants coming from domestic sewage of unconnected areas adjoining the shore and possibly marine pollution. During the last decades heavy metals have become common contaminants of aquatic and wetland environments throughout the world because of human activity and technological development. Increasing attention has been given during the last decade to the protection of marine and freshwater aquatic environment against pollution, both nationally and internationally. Macro-benthoses are the most commonly organisms used as bio-indicators water quality assessment. All of the aquatic macro-invertebrates that were collected from El-Taween station, Lake Timsah, Egypt fell into three major groups that were fairly easy to identify. They were annelids (Polychaeta and Oligochaeta, molluscs (Bivalvia and Gastropoda and arthropods (Crustacea. The small sized crustacean Sphaeroma. serratum are considered suitable species for aquatic bio-monitoring because they hold an important position in the aquatic food chain responds to many pollutants, easy to culture and has short life cycles. Iron was most important determinant; it appears in high concentrations in both water sample and the tissue of crustacean sample (S. serratum.

Cell formation by myxozoan species is not explained by dogma.

Science.gov (United States)

Morris, David J

2010-08-22

Eukaryotes form new cells through the replication of nuclei followed by cytokinesis. A notable exception is reported from the class Myxosporea of the phylum Myxozoa. This assemblage of approximately 2310 species is regarded as either basal bilaterian or cnidarian, depending on the phylogenetic analysis employed. For myxosporeans, cells have long been regarded as forming within other cells by a process referred to as endogenous budding. This would involve a nucleus forming endoplasmic reticulum around it, which transforms into a new plasma membrane, thus enclosing and separating it from the surrounding cell. This remarkable process, unique within the Metazoa, is accepted as occurring within stages found in vertebrate hosts, but has only been inferred from those stages observed within invertebrate hosts. Therefore, I conducted an ultrastructural study to examine how internal cells are formed by a myxosporean parasitizing an annelid. In this case, actinospore parasite stages clearly internalized existing cells; a process with analogies to the acquisition of endosymbiotic algae by cnidarian species. A subsequent examination of the myxozoan literature did not support endogenous budding, indicating that this process, which has been a central tenet of myxozoan developmental biology for over a century, is dogma.

Bioerosion and encrustation: Evidences from the Middle ‒ Upper Jurassic of central Saudi Arabia

Science.gov (United States)

El-Hedeny, Magdy; El-Sabbagh, Ahmed; Al Farraj, Saleh

2017-10-01

The Middle ‒ Upper Jurassic hard substrates of central Saudi Arabia displayed considerable signs of bioerosion and encrustations. They include organic (oysters, other bivalves, gastropods, corals and brachiopods) and an inorganic carbonate hardground that marks the boundary between the Middle Jurassic Tuwaiq Mountain Limestone and the Upper Jurassic Hanifa Formation. Traces of bioerosion in organic substrates include seven ichnotaxa produced by bivalves (Gastrochaenolites Leymerie, 1842), polychaete annelids (Trypanites Mägdefrau, 1932; MaeandropolydoraVoigt, 1965 and CaulostrepsisClarke, 1908), sponges (Entobia Bronn, 1837), acrothoracican cirripedes (Rogerella Saint-Seine, 1951), gastropods (Oichnus Bromley, 1981) and probable ?Centrichnus cf. eccentricus. The encrusting epifauna on these substrates consist of several organisms, including oysters, serpulid worms, corals and foraminifera. In contrast, the carbonate hardground was only bioeroded by Gastrochaenolite, Trypanites and Entobia. Epibionts on this hardground include ;Liostrea Douvillé, 1904-type; oysters, Nanogyra nana Sowerby, 1822 and serpulids. In general, bioerosion and encrustation are less diversified in hardground than in organic substrates, indicating a long time of exposition of organic substrates with slow to moderate rate of deposition in a restricted marine environment. Both organic and inorganic commuinities are correlated with those of other equatorial, subtropical and temperate equivalents.

Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata

KAUST Repository

Chandramouli, Kondethimmanahalli

2015-09-04

The polychaetous annelid Neanthes acuminata complex has a widespread distribution, with the California population referred to as N. arenaceodentata. The reproductive pattern in this complex is unique, in that the female reproduces once and then dies, whereas the male can reproduce up to nine times. The male incubates the embryos until the larvae leave the male’s tube 21–28 days later and commences feeding. Reproductive success and protein expression patterns were measured over the nine reproductive periods. The percent success of the male in producing juveniles increased during the first three reproductive periods and then decreased, but the number of juveniles produced was similar through all nine periods. iTRAQ based quantitative proteomics were used to analyze the dynamics of protein expression patterns. The expression patterns of several proteins were found to be altered. The abundant expression of muscular and contractile proteins may have affected body weight and reproductive success. Sperm have never been observed; fertilization occurs within the parent’s tube. Proteins associated with sperm maturation and fertilization were identified, including ATPase, clathrin, peroxiredoxins and enolase, which may provide clues to the molecular mechanisms enabling males to reproduce multiple times.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil.

Science.gov (United States)

Bissoli, Lorena B; Bernardino, Angelo F

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil.

Mechanisms of carbacholine and GABA action on resting membrane potential and Na+/K+-ATPase of Lumbricus terrestris body wall muscles

Czech Academy of Sciences Publication Activity Database

Volkov, E. M.; Nurullin, L. F.; Volkov, M. E.; Nikolsky, E. E.; Vyskočil, František

2011-01-01

Roč. 158, č. 4 (2011), s. 520-524 ISSN 1095-6433 R&D Projects: GA AV ČR(CZ) IAA500110905; GA ČR GA202/09/0806 Institutional research plan: CEZ:AV0Z50110509 Keywords : GABA * acetylcholine * atropine Subject RIV: ED - Physiology Impact factor: 2.235, year: 2011

Use of plant and earthworm bioassays to evaluate remediation of soil from a site contaminated with polychlorinated biphenyls

Energy Technology Data Exchange (ETDEWEB)

Meier, J.R.; Chang, L.W.; Meckes, M.C.; Smith, M.K. [Environmental Protection Agency, Cincinnati, OH (United States); Jacobs, S. [DynCorp, Cincinnati, OH (United States); Torsella, J. [Oak Ridge Inst. of Science and Education, Cincinnati, OH (United States)

1997-05-01

Soil from a site heavily contaminated with polychlorinated biphenyls (PCBs) was treated with a pilot-scale, solvent extraction technology. Bioassays in earthworms and plants were used to examine the efficacy of the remediation process for reducing the toxicity of the soil. The earthworm toxicity bioassays were the 14-d survival test and 21-d reproduction test, using Lumbricus terrestris and Eisenia fetida andrei. The plant bioassays included phytotoxicity tests for seed germination and root elongation in lettuce and oats, and a genotoxicity test (anaphase aberrations) in Allium cepa (common onion). Although the PCB content of the soil was reduced by 99% (below the remediation goal), toxicity to earthworm reproduction remained essentially unchanged following remediation. Furthermore, phytotoxicity and genotoxicity were higher for the remediated soil compared to the untreated soil. The toxicity remaining after treatment appeared to be due to residual solvent introduced during the remediation process, and/or to heavy metals or other inorganic contaminants not removed by the treatment. Mixture studies involving isopropanol and known toxicants indicated possible synergistic effects of the extraction solvent and soil contaminants. The toxicity in plants was essentially eliminated by a postremediation, water-rinsing step. These results demonstrate a need for including toxicity measurements in the evaluation of technologies used in hazardous waste site remediations, and illustrate the potential value of such measurements for making modifications to remediation processes.

Comparative toxicity of pentachlorophenol to three earthworm species in artificial soil

Energy Technology Data Exchange (ETDEWEB)

Fitzgerald, D.; Lanno, R.P.; Farwell, A.; Dixon, D.G. [Univ. of Waterloo, Ontario (Canada). Dept. of Biology

1994-12-31

Although methods for standardized toxicity tests with earthworms exist, many of the test parameters and conditions have not been validated in actual tests and with different species of worms. This study evaluated the toxicity of pentachlorophenol (PCP) to three species of earthworms, Lumbricus terrestris, Eisenia fetida, and Eudrilus eugeniae using various methods of data analysis and body residues. Tests were conducted in artificial soil for a period of 28 days or until an Acute Lethality Threshold (ALT) was reached. An intensive temporal sampling regime was applied to generate sufficient data for the accurate estimation of ALTs using both LC50/time and time-to-death/soil concentration methods of data analysis. L. terrestris was tested at 15 C, E. eugeniae at 24 C, and E. fetida at both temperatures. Total body residues of PCP were measured by GC following cryogenic separation of the lipid fraction of the worm. ALTs were significantly different between E. fetida and the two larger species of worms. No effect of temperature on the ALT for E. fetida was observed, although the time taken to reach the ALT increased at the lower temperature. The relationship of PCP residues at mortality will be discussed in terms of the effects of species, body size and temperature. Limitations of the artificial soil based upon growth curves of worms will also be examined.

Metal concentrations in earthworms from sewage sludge-amended soils at a strip mine reclamation site

Energy Technology Data Exchange (ETDEWEB)

Pietz, R.I.; Peterson, J.R.; Prater, J.E.; Zenz, D.R.

A 3-yr study of earthworms was initiated in selected mine soil and nonmined fields at a Fulton County, IL land reclamation site. The purpose of this research was to determine the effect of the land application of anaerobically digested sewage sludge, used to reclaim the site, on heavy metal accumulations in earthworms. Two species of earthworms, Lumbricus terrestris and Aporrectodea tuberculata, were identified in the sludge-amended and nonamended, nonmined fields sampled. Only A. tuberculata was found in the sludge-amended and nonamended mine soil fields sampled. Earthworm metal concentrations generally increased with time in all the sampled fields. The decreasing order of metal accumulation by earthworms in all sludge-amended fields sampled was Cu > Cd > Ni > Cr > Pb > Zn. Sewage sludge applications to fields on both land types resulted in significant accumulations of Cd, Cu, and Zn. Land type (mine soil vs. nonmined) significantly affected earthworm Zn concentrations, with levels being higher in all nonmined fields sampled. Earthworm Cd and Cu accumulations in all fields sampled were significantly related to the current amounts of sludge-applied metals, the amount applied since the previous sampling. Concentrations of Ni, Cr, and Pb in earthworms were not significantly related to sewage sludge applications during the 1975 to 1977 sampling period. The higher Cd and Cu concentrations in earthworms from sludge-amended fields may pose a potential hazard to predators.

Predicting macropores in space and time by earthworms and abiotic controls

Science.gov (United States)

Hohenbrink, Tobias Ludwig; Schneider, Anne-Kathrin; Zangerlé, Anne; Reck, Arne; Schröder, Boris; van Schaik, Loes

2017-04-01

Macropore flow increases infiltration and solute leaching. The macropore density and connectivity, and thereby the hydrological effectiveness, vary in space and time due to earthworms' burrowing activity and their ability to refill their burrows in order to survive drought periods. The aim of our study was to predict the spatiotemporal variability of macropore distributions by a set of potentially controlling abiotic variables and abundances of different earthworm species. We measured earthworm abundances and effective macropore distributions using tracer rainfall infiltration experiments in six measurement campaigns during one year at six field sites in Luxembourg. Hydrologically effective macropores were counted in three soil depths (3, 10, 30 cm) and distinguished into three diameter classes (6 mm). Earthworms were sampled and determined to species-level. In a generalized linear modelling framework, we related macropores to potential spatial and temporal controlling factors. Earthworm species such as Lumbricus terrestris and Aporrectodea longa, local abiotic site conditions (land use, TWI, slope), temporally varying weather conditions (temperature, humidity, precipitation) and soil moisture affected the number of effective macropores. Main controlling factors and explanatory power of the models (uncertainty and model performance) varied depending on the depth and diameter class of macropores. We present spatiotemporal predictions of macropore density by daily-resolved, one year time series of macropore numbers and maps of macropore distributions at specific dates in a small-scale catchment with 5 m resolution.

Functional Morphology of Eunicidan (Polychaeta) Jaws

Science.gov (United States)

Clemo, W. C.; Dorgan, K. M.

2016-02-01

Polychaetes exhibit diverse feeding strategies and diets, with some species possessing hardened teeth or jaws of varying complexity. Species in the order Eunicida have complex, rigidly articulated jaws consisting of multiple pairs of maxillae and a pair of mandibles. While all Eunicida possess this general jaw structure, a number of characteristics of the jaw parts vary considerably among families. These differences, described for fossilized and extant species' jaws, were used to infer evolutionary relationships, but current phylogeny shows that jaw structures that are similar among several families are convergent. Little has been done, however, to relate jaw functional morphology and feeding behavior to diet. To explore these relationships, we compared the jaw kinematics of two taxa with similar but evolutionarily convergent jaw structures: Diopatra (Onuphidae) and Lumbrineris (Lumbrineridae). Diopatra species are tube-dwelling and predominantly herbivorous, whereas Lumbrineris species are burrowing carnivores. Jaw kinematics were observed and analyzed by filming individuals biting or feeding and tracking tooth movements in videos. Differences in jaw structure and kinematics between Diopatra and Lumbrineris can be interpreted to be consistent with their differences in diet. Relating jaw morphology to diet would provide insight into early annelid communities by linking fossil teeth (scolecodonts) to the ecological roles of extant species with similar morphologies.

Development of aquatic life criteria for triclosan and comparison of the sensitivity between native and non-native species.

Science.gov (United States)

Wang, Xiao-Nan; Liu, Zheng-Tao; Yan, Zhen-Guang; Zhang, Cong; Wang, Wei-Li; Zhou, Jun-Li; Pei, Shu-Wei

2013-09-15

Triclosan (TCS) is an antimicrobial agent which is used as a broad-spectrum bacteriostatic and found in personal care products, and due to this it is widely spread in the aquatic environment. However, there is no paper dealing with the aquatic life criteria of TCS, mainly result from the shortage of toxicity data of different taxonomic levels. In the present study, toxicity data were obtained from 9 acute toxicity tests and 3 chronic toxicity tests using 9 Chinese native aquatic species from different taxonomic levels, and the aquatic life criteria was derived using 3 methods. Furthermore, differences of species sensitivity distributions (SSD) between native and non-native species were compared. Among the tested species, demersal fish Misgurnus anguillicaudatus was the most sensitive species, and the fishes were more sensitive than the aquatic invertebrates of Annelid and insect, and the insect was the least sensitive species. The comparison showed that there was no significant difference between SSDs constructed from native and non-native taxa. Finally, a criterion maximum concentration of 0.009 mg/L and a criterion continuous concentration of 0.002 mg/L were developed based on different taxa, according to the U.S. Environmental Protection Agency guidelines. Copyright © 2013 Elsevier B.V. All rights reserved.

A new earthworm cellulase and its possible role in the innate immunity.

Science.gov (United States)

Park, In Yong; Cha, Ju Roung; Ok, Suk-Mi; Shin, Chuog; Kim, Jin-Se; Kwak, Hee-Jin; Yu, Yun-Sang; Kim, Yu-Kyung; Medina, Brenda; Cho, Sung-Jin; Park, Soon Cheol

2017-02-01

A new endogenous cellulase (Ean-EG) from the earthworm, Eisenia andrei and its expression pattern are demonstrated. Based on a deduced amino acid sequence, the open reading frame (ORF) of Ean-EG consisted of 1368 bps corresponding to a polypeptide of 456 amino acid residues in which is contained the conserved region specific to GHF9 that has the essential amino acid residues for enzyme activity. In multiple alignments and phylogenetic analysis, the deduced amino acid sequence of Ean- EG showed the highest sequence similarity (about 79%) to that of an annelid (Pheretima hilgendorfi) and could be clustered together with other GHF9 cellulases, indicating that Ean-EG could be categorized as a member of the GHF9 to which most animal cellulases belong. The histological expression pattern of Ean-EG mRNA using in situ hybridization revealed that the most distinct expression was observed in epithelial cells with positive hybridization signal in epidermis, chloragogen tissue cells, coelomic cell-aggregate, and even blood vessel, which could strongly support the fact that at least in the earthworm, Eisenia andrei, cellulase function must not be limited to digestive process but be possibly extended to the innate immunity. Copyright © 2016 Elsevier Ltd. All rights reserved.

What´s in the tank? Nematodes and other major components of the meiofauna of bromeliad phytotelms in lowland Panama.

Science.gov (United States)

Zotz, Gerhard; Traunspurger, Walter

2016-03-15

Nematodes are a very diverse and extremely abundant group of animals, but their occurrence in the tropics is surprisingly little understood. We investigated the meiofauna of epiphytic tank bromeliads in the lowlands of Panama with particular emphasis on nematodes. We encountered 89 morphospecies of nematodes in 54 bromeliad tanks, which were sampled in the wet and the dry season. Rotifers were by far the most abundant group in both the dry and the wet season (with up to 960 individual ml(-1)), followed by nematodes, annelids and harpacticoid copepods. Individual plants hosted up to 25 nematode species. These nematodes represented a diversity of feeding guilds, suction-feeders and deposit-feeders being most abundant. The relative abundances of feeding-types of nematodes differed considerably in the wet and dry season. Both species richness and abundance were strongly correlated with the size of the phytotelms and the season, while species diversity assessed with the Shannon-index was affected by neither of the two. This is the first study with a particular focus on the diversity of nematodes in tank bromeliads. We document a meiofauna of considerable abundance and diversity, which suggests important functional roles in ecological processes such as decomposition, which in turn warrants further study.

Quo Vadis Venomics? A Roadmap to Neglected Venomous Invertebrates

Science.gov (United States)

von Reumont, Bjoern Marcus; Campbell, Lahcen I.; Jenner, Ronald A.

2014-01-01

Venomics research is being revolutionized by the increased use of sensitive -omics techniques to identify venom toxins and their transcripts in both well studied and neglected venomous taxa. The study of neglected venomous taxa is necessary both for understanding the full diversity of venom systems that have evolved in the animal kingdom, and to robustly answer fundamental questions about the biology and evolution of venoms without the distorting effect that can result from the current bias introduced by some heavily studied taxa. In this review we draw the outlines of a roadmap into the diversity of poorly studied and understood venomous and putatively venomous invertebrates, which together represent tens of thousands of unique venoms. The main groups we discuss are crustaceans, flies, centipedes, non-spider and non-scorpion arachnids, annelids, molluscs, platyhelminths, nemerteans, and echinoderms. We review what is known about the morphology of the venom systems in these groups, the composition of their venoms, and the bioactivities of the venoms to provide researchers with an entry into a large and scattered literature. We conclude with a short discussion of some important methodological aspects that have come to light with the recent use of new -omics techniques in the study of venoms. PMID:25533518

Isolation, characterization, and expression of Le-msx, a maternally expressed member of the msx gene family from the glossiphoniid leech, Helobdella.

Science.gov (United States)

Master, V A; Kourakis, M J; Martindale, M Q

1996-12-01

The msx gene family is one of the most highly conserved of the nonclustered homeobox-containing genes. We have isolated an msx homolog (Le-msx) from the glossiphoniid leech, Helobdella robusta, and characterized its pattern of expression by whole mount in situ hybridization. In situ expression and reverse transcription polymerase chain reaction (RT-PCR) data results show that Le-msx is a maternal transcript initially uniformly distributed in the cortex of immature oocytes that becomes asymmetrically localized to the polar regions of the uncleaved zygote. This is the earliest reported expression for the msx gene family and the first maternally expressed homeodomain-containing transcription factor reported in annelids. During embryonic development, Le-msx is expressed in all 10 embryonic stem cells and their segmental founder cell descendants. At midembryonic stages, Le-msx is expressed in the expanding germinal plate. Le-msx is confined to the central nervous system and nephridia at late (stage 9) stages and subsequently disappears from nephridia. In addition, we present a phylogenetic hypothesis for the evolution of the msx gene family, including the identification of a putative C. elegans msx homolog and the realignment of the sponge msx homolog to the NK class of homeodomain genes.

Nervous systems and scenarios for the invertebrate-to-vertebrate transition.

Science.gov (United States)

Holland, Nicholas D

2016-01-05

Older evolutionary scenarios for the origin of vertebrates often gave nervous systems top billing in accordance with the notion that a big-brained Homo sapiens crowned a tree of life shaped mainly by progressive evolution. Now, however, tree thinking positions all extant organisms equidistant from the tree's root, and molecular phylogenies indicate that regressive evolution is more common than previously suspected. Even so, contemporary theories of vertebrate origin still focus on the nervous system because of its functional importance, its richness in characters for comparative biology, and its central position in the two currently prominent scenarios for the invertebrate-to-vertebrate transition, which grew out of the markedly neurocentric annelid and enteropneust theories of the nineteenth century. Both these scenarios compare phyla with diverse overall body plans. This diversity, exacerbated by the scarcity of relevant fossil data, makes it challenging to establish plausible homologies between component parts (e.g. nervous system regions). In addition, our current understanding of the relation between genotype and phenotype is too preliminary to permit us to convert gene network data into structural features in any simple way. These issues are discussed here with special reference to the evolution of nervous systems during proposed transitions from invertebrates to vertebrates. © 2015 The Author(s).

Quo Vadis Venomics? A Roadmap to Neglected Venomous Invertebrates

Directory of Open Access Journals (Sweden)

Bjoern Marcus von Reumont

2014-12-01

Full Text Available Venomics research is being revolutionized by the increased use of sensitive -omics techniques to identify venom toxins and their transcripts in both well studied and neglected venomous taxa. The study of neglected venomous taxa is necessary both for understanding the full diversity of venom systems that have evolved in the animal kingdom, and to robustly answer fundamental questions about the biology and evolution of venoms without the distorting effect that can result from the current bias introduced by some heavily studied taxa. In this review we draw the outlines of a roadmap into the diversity of poorly studied and understood venomous and putatively venomous invertebrates, which together represent tens of thousands of unique venoms. The main groups we discuss are crustaceans, flies, centipedes, non-spider and non-scorpion arachnids, annelids, molluscs, platyhelminths, nemerteans, and echinoderms. We review what is known about the morphology of the venom systems in these groups, the composition of their venoms, and the bioactivities of the venoms to provide researchers with an entry into a large and scattered literature. We conclude with a short discussion of some important methodological aspects that have come to light with the recent use of new -omics techniques in the study of venoms.

The larval nervous system of the penis worm Priapulus caudatus (Ecdysozoa).

Science.gov (United States)

Martín-Durán, José M; Wolff, Gabriella H; Strausfeld, Nicholas J; Hejnol, Andreas

2016-01-05

The origin and extreme diversification of the animal nervous system is a central question in biology. While most of the attention has traditionally been paid to those lineages with highly elaborated nervous systems (e.g. arthropods, vertebrates, annelids), only the study of the vast animal diversity can deliver a comprehensive view of the evolutionary history of this organ system. In this regard, the phylogenetic position and apparently conservative molecular, morphological and embryological features of priapulid worms (Priapulida) place this animal lineage as a key to understanding the evolution of the Ecdysozoa (i.e. arthropods and nematodes). In this study, we characterize the nervous system of the hatching larva and first lorica larva of the priapulid worm Priapulus caudatus by immunolabelling against acetylated and tyrosinated tubulin, pCaMKII, serotonin and FMRFamide. Our results show that a circumoral brain and an unpaired ventral nerve with a caudal ganglion characterize the central nervous system of hatching embryos. After the first moult, the larva attains some adult features: a neck ganglion, an introvert plexus, and conspicuous secondary longitudinal neurites. Our study delivers a neuroanatomical framework for future embryological studies in priapulid worms, and helps illuminate the course of nervous system evolution in the Ecdysozoa. © 2015 The Authors.

Application of lime (CaCO3) to promote forest recovery from severe acidification increases potential for earthworm invasion

Science.gov (United States)

Homan, Caitlin; Beirer, Colin M; McCay, Timothy S; Lawrence, Gregory B.

2016-01-01

The application of lime (calcium carbonate) may be a cost-effective strategy to promote forest ecosystem recovery from acid impairment, under contemporary low levels of acidic deposition. However, liming acidified soils may create more suitable habitat for invasive earthworms that cause significant damage to forest floor communities and may disrupt ecosystem processes. We investigated the potential effects of liming in acidified soils where earthworms are rare in conjunction with a whole-ecosystem liming experiment in the chronically acidified forests of the western Adirondacks (USA). Using a microcosm experiment that replicated the whole-ecosystem treatment, we evaluated effects of soil liming on Lumbricus terrestris survivorship and biomass growth. We found that a moderate lime application (raising pH from 3.1 to 3.7) dramatically increased survival and biomass of L. terrestris, likely via increases in soil pH and associated reductions in inorganic aluminum, a known toxin. Very few L. terrestris individuals survived in unlimed soils, whereas earthworms in limed soils survived, grew, and rapidly consumed leaf litter. We supplemented this experiment with field surveys of extant earthworm communities along a gradient of soil pH in Adirondack hardwood forests, ranging from severely acidified (pH 5). In the field, no earthworms were observed where soil pH 4.4 and human dispersal vectors, including proximity to roads and public fishing access, were most prevalent. Overall our results suggest that moderate lime additions can be sufficient to increase earthworm invasion risk where dispersal vectors are present.

Impact of earthworms on trace element solubility in contaminated mine soils amended with green waste compost

Energy Technology Data Exchange (ETDEWEB)

Sizmur, Tom, E-mail: t.p.sizmur@reading.ac.uk [Soil Research Centre, Dept. Geography and Environmental Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading, RG6 6DW (United Kingdom); Palumbo-Roe, Barbara [British Geological Survey, Kingsley Dunham Centre, Keyworth, Nottingham, NG12 5GG (United Kingdom); Hodson, Mark E. [Soil Research Centre, Dept. Geography and Environmental Science, School of Human and Environmental Sciences, University of Reading, Whiteknights, Reading, RG6 6DW (United Kingdom)

2011-07-15

The common practice of remediating metal contaminated mine soils with compost can reduce metal mobility and promote revegetation, but the effect of introduced or colonising earthworms on metal solubility is largely unknown. We amended soils from an As/Cu (1150 mgAs kg{sup -1} and 362 mgCu kg{sup -1}) and Pb/Zn mine (4550 mgPb kg{sup -1} and 908 mgZn kg{sup -1}) with 0, 5, 10, 15 and 20% compost and then introduced Lumbricus terrestris. Porewater was sampled and soil extracted with water to determine trace element solubility, pH and soluble organic carbon. Compost reduced Cu, Pb and Zn, but increased As solubility. Earthworms decreased water soluble Cu and As but increased Pb and Zn in porewater. The effect of the earthworms decreased with increasing compost amendment. The impact of the compost and the earthworms on metal solubility is explained by their effect on pH and soluble organic carbon and the environmental chemistry of each element. - Graphical abstract: Display Omitted Highlights: > Compost reduced the mobility of Cu, Pb and Zn. > Compost increased the mobility of As. > Earthworms decreased water soluble As and Cu but increased Pb and Zn in porewater. > These effects are explained by the impact of the earthworms and compost on pH and DOC. - The effect of earthworms on metal solubility was due to changes in dissolved organic carbon and pH but was reduced with increasing compost amendments.

Impact of earthworms on trace element solubility in contaminated mine soils amended with green waste compost

International Nuclear Information System (INIS)

Sizmur, Tom; Palumbo-Roe, Barbara; Hodson, Mark E.

2011-01-01

The common practice of remediating metal contaminated mine soils with compost can reduce metal mobility and promote revegetation, but the effect of introduced or colonising earthworms on metal solubility is largely unknown. We amended soils from an As/Cu (1150 mgAs kg -1 and 362 mgCu kg -1 ) and Pb/Zn mine (4550 mgPb kg -1 and 908 mgZn kg -1 ) with 0, 5, 10, 15 and 20% compost and then introduced Lumbricus terrestris. Porewater was sampled and soil extracted with water to determine trace element solubility, pH and soluble organic carbon. Compost reduced Cu, Pb and Zn, but increased As solubility. Earthworms decreased water soluble Cu and As but increased Pb and Zn in porewater. The effect of the earthworms decreased with increasing compost amendment. The impact of the compost and the earthworms on metal solubility is explained by their effect on pH and soluble organic carbon and the environmental chemistry of each element. - Graphical abstract: Display Omitted Highlights: → Compost reduced the mobility of Cu, Pb and Zn. → Compost increased the mobility of As. → Earthworms decreased water soluble As and Cu but increased Pb and Zn in porewater. → These effects are explained by the impact of the earthworms and compost on pH and DOC. - The effect of earthworms on metal solubility was due to changes in dissolved organic carbon and pH but was reduced with increasing compost amendments.

Use of organic amendments as a bioremediation strategy to reduce the bioavailability of chlorpyrifos insecticide in soils. Effects on soil biology.

Science.gov (United States)

Tejada, Manuel; Gómez, Isidoro; Del Toro, Marina

2011-10-01

The sorption capacity of both an organic municipal solid waste by-product (MSW) and a cow manure (CM) in a soil polluted with chlorpyrifos, as well as its effect on soil microbial activity, and weight, reproductive parameters and glutathione-S-transferase activity of two earthworm species (Eisenia fetida and Lumbricus terrestris) were studied. Chlorpyrifos was added at the recommended application rate (5 L ha(-1); 768 mg chlorpyrifos kg(-1)) and treated with MSW at a rate of 10% and CM at a rate of 5.8% in order to apply the same amount of organic matter to the soil. An unamended polluted soil was used as control. Earthworm cocoon number, average weight of cocoon, and number of juveniles per cocoon were measured after 30 days of incubation, whereas soil enzymatic activities, earthworm weight, and glutathione-S-transferase activity of earthworms were measured after 3, 45 and 90 days. Soil enzymatic activities, reproductive and glutathione-S-transferase activity in both worms decreased in polluted soil. The inhibition percentage of soil enzymatic activities, reproductive and glutathione-S-transferase activity in both worms was lower in MSW-amended soil than for CM-amended soil. The toxic effect of chlorpyrifos on E. fetida was lowest compared to L. terrestris. This suggested that the addition of organic wastes with higher humic than fulvic acid concentration is more beneficial for remediation of soils polluted with chlorpyrifos. Copyright © 2011 Elsevier Inc. All rights reserved.

Neurotropic and neuroprotective activities of the earthworm peptide Lumbricusin

International Nuclear Information System (INIS)

Kim, Dae Hong; Lee, Ik Hwan; Nam, Seung Taek; Hong, Ji; Zhang, Peng; Hwang, Jae Sam; Seok, Heon; Choi, Hyemin; Lee, Dong Gun; Kim, Jae Il; Kim, Ho

2014-01-01

Highlights: • 11-mer peptide Lumbricusin, a defensin like peptide, is isolated from earthworm. • We here demonstrated that Lumbricusin has neurotropic and neuroprotective effects. • p27 degradation by Lumbricusin mediates effects of Lumbricusin on neuronal cells. - Abstract: We recently isolated a polypeptide from the earthworm Lumbricus terrestris that is structurally similar to defensin, a well-known antibacterial peptide. An 11-mer antibacterial peptide (NH 2 -RNRRWCIDQQA), designated Lumbricusin, was synthesized based on the amino acid sequence of the isolated polypeptide. Since we previously reported that CopA3, a dung beetle peptide, enhanced neuronal cell proliferation, we here examined whether Lumbricusin exerted neurotropic and/or neuroprotective effects. Lumbricusin treatment induced a time-dependent increase (∼51%) in the proliferation of human neuroblastoma SH-SY5Y cells. Lumbricusin also significantly inhibited the apoptosis and decreased viability induced by treatment with 6-hydroxy dopamine, a Parkinson’s disease-mimicking agent. Immunoblot analyses revealed that Lumbricusin treatment increased ubiquitination of p27 Kip1 protein, a negative regulator of cell-cycle progression, in SH-SY5Y cells, and markedly promoted its degradation. Notably, adenoviral-mediated over-expression of p27 Kip1 significantly blocked the antiapoptotic effect of Lumbricusin in 6-hydroxy dopamine-treated SH-SY5Y cells. These results suggest that promotion of p27 Kip1 degradation may be the main mechanism underlying the neuroprotective and neurotropic effects of Lumbricusin

Neurotropic and neuroprotective activities of the earthworm peptide Lumbricusin

Energy Technology Data Exchange (ETDEWEB)

Kim, Dae Hong; Lee, Ik Hwan; Nam, Seung Taek; Hong, Ji; Zhang, Peng [Department of Life Science, College of Natural Science, Daejin University, Pocheon, Gyeonggido 487-711 (Korea, Republic of); Hwang, Jae Sam [Department of Agricultural Biology, National Academy of Agricultural Science, RDA, Suwon 441-707 (Korea, Republic of); Seok, Heon [Department of Biomedical Engineering, Jungwon University, Goesan, Chungcheongbukdo 367-700 (Korea, Republic of); Choi, Hyemin; Lee, Dong Gun [School of Life Sciences, KNU Creative Bioresearch Group (BK21 Plus Program), College of Natural Sciences, Kyungpook National University, Daehak-ro 80, Buk-gu, Daegu 702-701 (Korea, Republic of); Kim, Jae Il [School of Life Sciences, Gwangju Institute of Science and Technology, Oryong-dong, Buk-gu, Gwangju 500-712 (Korea, Republic of); Kim, Ho, E-mail: hokim@daejin.ac.kr [Department of Life Science, College of Natural Science, Daejin University, Pocheon, Gyeonggido 487-711 (Korea, Republic of)

2014-06-06

Highlights: • 11-mer peptide Lumbricusin, a defensin like peptide, is isolated from earthworm. • We here demonstrated that Lumbricusin has neurotropic and neuroprotective effects. • p27 degradation by Lumbricusin mediates effects of Lumbricusin on neuronal cells. - Abstract: We recently isolated a polypeptide from the earthworm Lumbricus terrestris that is structurally similar to defensin, a well-known antibacterial peptide. An 11-mer antibacterial peptide (NH{sub 2}-RNRRWCIDQQA), designated Lumbricusin, was synthesized based on the amino acid sequence of the isolated polypeptide. Since we previously reported that CopA3, a dung beetle peptide, enhanced neuronal cell proliferation, we here examined whether Lumbricusin exerted neurotropic and/or neuroprotective effects. Lumbricusin treatment induced a time-dependent increase (∼51%) in the proliferation of human neuroblastoma SH-SY5Y cells. Lumbricusin also significantly inhibited the apoptosis and decreased viability induced by treatment with 6-hydroxy dopamine, a Parkinson’s disease-mimicking agent. Immunoblot analyses revealed that Lumbricusin treatment increased ubiquitination of p27{sup Kip1} protein, a negative regulator of cell-cycle progression, in SH-SY5Y cells, and markedly promoted its degradation. Notably, adenoviral-mediated over-expression of p27{sup Kip1} significantly blocked the antiapoptotic effect of Lumbricusin in 6-hydroxy dopamine-treated SH-SY5Y cells. These results suggest that promotion of p27{sup Kip1} degradation may be the main mechanism underlying the neuroprotective and neurotropic effects of Lumbricusin.

Elevated CO2 and Tree Species Affect Microbial  Activity and Associated Aggregate Stability in Soil  Amended with Litter

Directory of Open Access Journals (Sweden)

Salwan M. J. Al‐Maliki

2017-03-01

Full Text Available (1 Elevated atmospheric CO2 (eCO2 may affect organic inputs to woodland soils with potential consequences for C dynamics and associated aggregation; (2 The Bangor Free Air Concentration Enrichment experiment compared ambient (330 ppmv and elevated (550 ppmv CO2 regimes over four growing seasons (2005–2008 under Alnus glutinosa, Betula pendula and Fagus sylvatica. Litter from the experiment (autumn 2008 and Lumbricus terrestris were added to mesocosm soils. Microbial properties and aggregate stability were investigated in soil and earthworm casts. Soils taken from the field experiment in spring 2009 were also investigated; (3 eCO2 litter had lower N and higher C:N ratios. F. sylvatica and B. pendula litter had lower N and P than A. glutinosa; F. sylvatica had higher cellulose. In mesocosms, eCO2 litter decreased respiration, mineralization constant (respired C:total organic C and soluble carbon in soil but not earthworm casts; microbial‐C and fungal hyphal length differed by species (A. glutinosa = B. pendula > F. sylvatica not CO2 regime. eCO2 increased respiration in field aggregates but increased stability only under F. sylvatica; (4 Lower litter quality under eCO2 may restrict its initial decomposition, affecting C stabilization in aggregates. Later resistant materials may support microbial activity and increase aggregate stability. In woodland, C and soil aggregation dynamics may alter under eCO2, but outcomes may be influenced by tree species and earthworm activity.

Evolution of cholinesterases in the animal kingdom.

Science.gov (United States)

Pezzementi, Leo; Chatonnet, Arnaud

2010-09-06

Cholinesterases emerged from a family of enzymes and proteins with adhesion properties. This family is absent in plants and expanded in multicellular animals. True cholinesterases appeared in triploblastic animals together with the cholinergic system. Lineage specific duplications resulted in two acetylcholinesterases in most hexapods and in up to four genes in nematodes. In vertebrates the duplication leading to acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) is now considered to be an ancient event which occurred before the split of osteichthyes. The product of one or the other of the paralogues is responsible for the physiological hydrolysis of acetylcholine, depending on the species lineage and tissue considered. The BChE gene seems to have been lost in some fish lineages. The complete genome of amphioxus (Branchiostoma floridae: cephalochordate) contains a large number of duplicated genes or pseudogenes of cholinesterases. Sequence comparison and tree constructions raise the question of considering the atypical ChE studied in this organism as a representative of ancient BChE. Thus nematodes, arthropods, annelids, molluscs, and vertebrates typically possess two paralogous genes coding for cholinesterases. The origin of the duplication(s) is discussed. The mode of attachment through alternative C-terminal coding exons seems to have evolved independently from the catalytic part of the gene. Copyright (c) 2010 Elsevier Ireland Ltd. All rights reserved.

A new molecular logic for BMP-mediated dorsoventral patterning in the leech Helobdella.

Science.gov (United States)

Kuo, Dian-Han; Weisblat, David A

2011-08-09

Bone morphogenetic protein (BMP) signaling is broadly implicated in dorsoventral (DV) patterning of bilaterally symmetric animals [1-3], and its role in axial patterning apparently predates the birth of Bilateria [4-7]. In fly and vertebrate embryos, BMPs and their antagonists (primarily Sog/chordin) diffuse and interact to generate signaling gradients that pattern fields of cells [8-10]. Work in other species reveals diversity in essential facets of this ancient patterning process, however. Here, we report that BMP signaling patterns the DV axis of segmental ectoderm in the leech Helobdella, a clitellate annelid (superphylum Lophotrochozoa) featuring stereotyped developmental cell lineages, but the detailed mechanisms of DV patterning in Helobdella differ markedly from fly and vertebrates. In Helobdella, BMP2/4s are expressed broadly, rather than in dorsal territory, whereas a dorsally expressed BMP5-8 specifies dorsal fate by short-range signaling. A BMP antagonist, gremlin, is upregulated by BMP5-8 in dorsolateral, rather than ventral territory, and yet the BMP-antagonizing activity of gremlin is required for normal ventral cell fates. Gremlin promotes ventral fates without disrupting dorsal fates by selectively inhibiting BMP2/4s, not BMP5-8. Thus, DV patterning in the development of the leech revealed unexpected evolutionary plasticity of the conserved BMP patterning system, presumably reflecting its adaptation to different modes of embryogenesis. Copyright © 2011 Elsevier Ltd. All rights reserved.

Transmission of nephridial bacteria of the earthworm Eisenia fetida.

Science.gov (United States)

Davidson, Seana K; Stahl, David A

2006-01-01

The lumbricid earthworms (annelid family Lumbricidae) harbor gram-negative bacteria in their excretory organs, the nephridia. Comparative 16S rRNA gene sequencing of bacteria associated with the nephridia of several earthworm species has shown that each species of worm harbors a distinct bacterial species and that the bacteria from different species form a monophyletic cluster within the genus Acidovorax, suggesting that there is a specific association resulting from radiation from a common bacterial ancestor. Previous microscopy and culture studies revealed the presence of bacteria within the egg capsules and on the surface of embryos but did not demonstrate that the bacteria within the egg capsule were the same bacteria that colonized the nephridia. We present evidence, based on curing experiments, in situ hybridizations with Acidovorax-specific probes, and 16S rRNA gene sequence analysis, that the egg capsules contain high numbers of the bacterial symbiont and that juveniles are colonized during development within the egg capsule. Studies exposing aposymbiotic hatchlings to colonized adults and their bedding material suggested that juvenile earthworms do not readily acquire bacteria from the soil after hatching but must be colonized during development by bacteria deposited in the egg capsule. Whether this is due to the developmental stage of the host or the physiological state of the symbiont remains to be investigated.

Review of experimental and natural invertebrate hosts of sealworm (Pseudoterranova decipiens and its distribution and abundance in macroinvertebrates in eastern Canada

Directory of Open Access Journals (Sweden)

David J Marcogliese

2001-11-01

Full Text Available Experimental and natural invertebrate intermediate hosts of sealworm (Pseudoterranova decipiens as well as transmission experiments of sealworm from invertebrates to fish are reviewed and summarized. Experimental hosts include copepods, mysids, cumaceans, isopods, amphipods, decapods, annelids, and molluscs. Invertebrates collected from eastern Canada between 1989 and 1995 were checked for nematode infections by microscopic examination of dissected animals or enzymatic digestion of bulk samples. Third-stage larval sealworm were found in mysids (Neomysis americana, Mysis stenolepis from Passamaquoddy Bay, the Bras d’Or Lakes, inshore Cape Breton, Sable Island and Sable Island Bank. Infected amphipods (Amphiporeia virginiana, Americorchestia megalophthalma, Gammarus spp. were found only on Sable Island. Typical infection rates in macroinvertebrates were 1-4/1000. No sealworm infections were found in approximately 18,000 amphipods examined from Sable Island Bank, the site of the most heavily infected fishes in eastern Canada. In Wallace Lake, a brackish pond on Sable Island, infection rates were much higher in mysids than in amphipods. Estimates of rates of transmission of sealworm from invertebrates to fish were derived from infection levels in Wallace Lake and feeding experiments involving sticklebacks and invertebrate prey. It is concluded that mysids may be much more important than amphipods in transmitting sealworm to fish hosts.

Structure of dehaloperoxidase B at 1.58 Å resolution and structural characterization of the AB dimer from Amphitrite ornata

Energy Technology Data Exchange (ETDEWEB)

Serrano, Vesna de; D’Antonio, Jennifer; Franzen, Stefan; Ghiladi, Reza A., E-mail: reza-ghiladi@ncsu.edu [North Carolina State University (United States)

2010-05-01

The crystal structure of dehaloperoxidase (DHP) isoenzyme B from the terebellid polychaete A. ornata, which exhibits both hemoglobin and peroxidase functions, has been determined at 1.58 Å resolution. As members of the globin superfamily, dehaloperoxidase (DHP) isoenzymes A and B from the marine annelid Amphitrite ornata possess hemoglobin function, but they also exhibit a biologically relevant peroxidase activity that is capable of converting 2,4,6-trihalophenols to the corresponding 2,6-dihaloquinones in the presence of hydrogen peroxide. Here, a comprehensive structural study of recombinant DHP B, both by itself and cocrystallized with isoenzyme A, using X-ray diffraction is presented. The structure of DHP B refined to 1.58 Å resolution exhibits the same distal histidine (His55) conformational flexibility as that observed in isoenzyme A, as well as additional changes to the distal and proximal hydrogen-bonding networks. Furthermore, preliminary characterization of the DHP AB heterodimer is presented, which exhibits differences in the AB interface that are not observed in the A-only or B-only homodimers. These structural investigations of DHP B provide insights that may relate to the mechanistic details of the H{sub 2}O{sub 2}-dependent oxidative dehalogenation reaction catalyzed by dehaloperoxidase, present a clearer description of the function of specific residues in DHP at the molecular level and lead to a better understanding of the paradigms of globin structure–function relationships.

Ethnozoological study of traditional medicinal appreciation of animals and their products among the indigenous people of Metema Woreda, North-Western Ethiopia.

Science.gov (United States)

Kendie, Fasil Adugna; Mekuriaw, Sileshi Andualem; Dagnew, Melkamu Andargie

2018-05-23

Using animals for different purposes goes back to the dawn of mankind. Animals served as a source of food, medicine, and clothing for humans and provided other services. This study was designed to undertake a cross-sectional ethnozoological field survey among the residents of Metema Woreda from November 2015 to May 2016. Data were collected through studied questionnaires, interviews, and focus group discussions with 36 purposively selected respondents. Ethnozoological data were collected of the local name of the animals, part of the animal used, mode of preparation and administration, and of additional information deemed useful. A total of 51 animal species were identified to treat around 36 different ailments. Of the animals used therapeutically, 27 species were mammals, 9 were birds, 7 arthropods, 6 reptiles, and 1 species each represented fish and annelids. Furthermore, the honey of the bee Apis mellifera was used to relieve many ailments and scored the highest fidelity value (n = 35.97%). The snake (Naja naja) and the teeth of crocodiles (Crocodylus spp.) had the lowest fidelity value (n = 2.56%). The results show that there is a wealth of ethnozoological knowledge to be documented which could be of use in developing new drugs. Hence, it is hoped that the information contained in this paper will be useful in future ethnozoological, ethnopharmacological, and conservation-related research of the region.

Insights into bilaterian evolution from three spiralian genomes

Energy Technology Data Exchange (ETDEWEB)

Simakov, Oleg; Marletaz, Ferdinand; Cho, Sung-Jin; Edsinger-Gonzales, Eric; Havlak, Paul; Hellsten, Uffe; Kuo, Dian-Han; Larsson, Tomas; Lv, Jie; Arendt, Detlev; Savage, Robert; Osoegawa, Kazutoyo; de Jong, Pieter; Grimwood, Jane; Chapman, Jarrod A.; Shapiro, Harris; Otillar, Robert P.; Terry, Astrid Y.; Boore, Jeffrey L.; Grigoriev, Igor V.; Lindberg, David R.; Seaver, Elaine C.; Weisblat, David A.; Putnam, Nicholas H.; Rokhsar, Daniel S.; Aerts, Andrea

2012-01-07

Current genomic perspectives on animal diversity neglect two prominent phyla, the molluscs and annelids, that together account for nearly one-third of known marine species and are important both ecologically and as experimental systems in classical embryology1, 2, 3. Here we describe the draft genomes of the owl limpet (Lottia gigantea), a marine polychaete (Capitella teleta) and a freshwater leech (Helobdella robusta), and compare them with other animal genomes to investigate the origin and diversification of bilaterians from a genomic perspective. We find that the genome organization, gene structure and functional content of these species are more similar to those of some invertebrate deuterostome genomes (for example, amphioxus and sea urchin) than those of other protostomes that have been sequenced to date (flies, nematodes and flatworms). The conservation of these genomic features enables us to expand the inventory of genes present in the last common bilaterian ancestor, establish the tripartite diversification of bilaterians using multiple genomic characteristics and identify ancient conserved long- and short-range genetic linkages across metazoans. Superimposed on this broadly conserved pan-bilaterian background we find examples of lineage-specific genome evolution, including varying rates of rearrangement, intron gain and loss, expansions and contractions of gene families, and the evolution of clade-specific genes that produce the unique content of each genome.

Proceraea exoryxae sp. nov. (Annelida, Syllidae, Autolytinae, the first known polychaete miner tunneling into the tunic of an ascidian

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Daniel Martin

2017-06-01

Full Text Available While studying organisms living in association with the solitary tunicate Phallusia nigra (Ascidiacea, Ascidiidae from a shallow fringing reef at Zeytouna Beach (Egyptian Red Sea, one of the collected ascidians showed peculiar perforations on its tunic. Once dissected, the perforations revealed to be the openings of a network of galleries excavated in the inner tunic (atrium by at least six individuals of a polychaetous annelid. The worms belonged to the Autolytinae (Syllidae, a subfamily that is well known to include specialized predators and/or symbionts, mostly associated with cnidarians. The Red Sea worms are here described as Proceraea exoryxae sp. nov., which are anatomically distinguished by the combination of simple chaetae only in anterior chaetigers, and a unique trepan with 33 teeth in one outer ring where one large tooth alternates with one medium-sized tricuspid tooth, and one inner ring with small teeth located just behind the large teeth. Male and female epitokes were found together with atokous individuals within galleries. Proceraea exoryxae sp. nov. constitutes the first known miner in the Autolytinae and the second species in this taxon known to live symbiotically with ascidians. The implications of finding this specialized parasite are discussed considering that Phallusia nigra has been introduced worldwide, in tropical and sub-tropical ecosystems, where it has the potential of becoming invasive.

Action of nereistoxin on recombinant neuronal nicotinic acetylcholine receptors expressed in Xenopus laevis oocytes.

Science.gov (United States)

Raymond Delpech, Valérie; Ihara, Makoto; Coddou, Claudio; Matsuda, Kazuhiko; Sattelle, David B

2003-11-01

Nereistoxin (NTX), a natural neurotoxin from the salivary glands of the marine annelid worm Lumbriconereis heteropoda, is highly toxic to insects. Its synthetic analogue, Cartap, was the first commercial insecticide based on a natural product. We have used voltage-clamp electrophysiology to compare the actions of NTX on recombinant nicotinic acetylcholine receptors (nicotinic AChRs) expressed in Xenopus laevis oocytes following nuclear injection of cDNAs. The recombinant nicotinic AChRs investigated were chicken alpha7, chicken alpha4beta2 and the Drosophila melanogaster/chicken hybrid receptors SAD/beta2 and ALS/beta2. No agonist action of NTX (0.1-100 microM) was observed on chicken alpha7, chicken alpha4beta2 and the Drosophila/chicken hybrid nicotinic AChRs. Currents elicited by ACh were reduced in amplitude by NTX in a dose-dependent manner. The toxin was slightly more potent on recombinant Drosophila/vertebrate hybrid receptors than on vertebrate homomeric (alpha7) or heteromeric (alpha4beta2) nicotinic AChRs. Block by NTX of the chicken alpha7, chicken alpha4beta2 and the SAD/beta2 and ALS/beta2 Drosophila/chicken hybrid receptors is in all cases non-competitive. Thus, the site of action on nicotinic AChRs of NTX, to which the insecticide Cartap is metabolised in insects, differs from that of the major nicotinic AChR-active insecticide, imidacloprid.

Structural characterization of hemoglobins from Monilifera and Frenulata tubeworms (Siboglinids): first discovery of giant hexagonal-bilayer hemoglobin in the former "Pogonophora" group.

Science.gov (United States)

Meunier, Cédric; Andersen, Ann C; Bruneaux, Matthieu; Le Guen, Dominique; Terrier, Peran; Leize-Wagner, Emmanuelle; Zal, Franck

2010-01-01

Siboglinids are symbiotic polychete annelids having hemoglobins as essential oxygen- and sulfide-carriers for their endosymbiotic bacteria. We analyzed the structure of the hemoglobins from two species of siboglinids: the monilifera Sclerolinum contortum and the frenulata Oligobrachia webbi (i.e. haakonmosbiensis) from Norwegian cold seeps. Measured by Multi-Angle Laser Light Scattering (MALLS), Sclerolinum shows a 3190+/-50 kDa hexagonal bilayer hemoglobin (HBL-Hb) and a 461+/-46 kDa ring-Hb, just as vestimentifera, whereas Oligobrachia has a 409+/-3.7 kDa ring-Hb only. Electrospray Ionization-Mass Spectrometry (ESI-MS) showed Sclerolinum HBL-Hb composed of seven monomeric globins (15-16 kDa), three disulfide-bonded globin heterodimers and three linkers. The heterodimers always contain globin-b (15814.4+/-1.5 Da). Sclerolinum ring-Hb is composed of globins and dimers with identical masses as its HBL-Hb, but lacks linkers. Oligobrachia ring-Hb has three globin monomers (14-15 kDa) only, with no disulfide-bonded dimers. Comparison of Sclerolinum hemoglobins between Storegga and Haakon Mosby Mud Volcano, using the normalized height of deconvoluted ESI-MS peaks, shows differences in globin monomers abundances that could reflect genetic differences or differential gene expression between distinct seep populations. The discovery of HBL-Hb in Sclerolinum is a new element supporting the hypothesis of monilifera being phylogenetically more closely related to vestimentifera, than to frenulata.

EVALUACIÓN DEL RIESGO DE CONTAMINACIÓN POR METAMIDOFOS EN LA MICROCUENCA EL SALTO DEL MUNICIPIO DE EL SANTUARIO, ANTIOQUIA

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David Horacio Ramírez

2007-12-01

Full Text Available En este trabajo de investigación, que se desarrolló en la microcuenca El Salto del municipio de El Santuario, se estimó la presencia del Metamidofos, en plantas de repollo (Brassica oleraceae y en el suelo y su riesgo de contaminación en aguas para el consumo humano. En el repollo el nivel de concentración del Metamidofos sobrepasó los límites máximos permisibles establecidos para esta planta por el Codex Alimentarius; en el suelo no se encontraron residuos del producto, pero sí en el agua de escorrentía y en dos sitios del cauce de la quebrada El Salto localizados aguas arriba de la bocatoma del acueducto municipal; no se detectó Metamidofos en la muestra de agua de la bocatoma del acueducto ni en la red de distribución del acueducto municipal. En la estimación cualitativa del riesgo de contaminación se utilizaron como variables de vulnerabilidad y amenaza la precipitación, la escorrentía, el coeficiente de escorrentía, el tiempo de concentración, la erosión, algunas propiedades físicas, químicas y biológicas del suelo y la pendiente de los terrenos. Se observó que el riesgo se presenta por la alta cantidad de insecticida utilizado y su frecuencia de utilización, que se incrementa según la distribución e intensidad de las lluvias y del potencial de erosión y este, a su vez, por el uso y manejo no adecuado del suelo. En la parcela experimental y en un terreno aledaño sembrado con pasto kikuyo (Pennisetum clandestinum, se calculó la población por unidad de área de la lombriz de tierra (Lumbricus terrestris. La ausencia de este organismo en la parcela cultivada con repollo (Brassica oleraceae se puede considerar como indicador biológico por la contaminación de este insecticida en el suelo.This investigation was done in El Salto watershed basin located in the municipality of El Santuario. It was examined the presence of Metamidofos in plants of cabbage, in soils, with risk of contamination in waters for the human

Effects of natural and human-induced hypoxia on coastal benthos

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L. A. Levin

2009-10-01

Full Text Available Coastal hypoxia (defined here as <1.42 ml L⁻¹; 62.5 μM; 2 mg L⁻¹, approx. 30% oxygen saturation develops seasonally in many estuaries, fjords, and along open coasts as a result of natural upwelling or from anthropogenic eutrophication induced by riverine nutrient inputs. Permanent hypoxia occurs naturally in some isolated seas and marine basins as well as in open slope oxygen minimum zones. Responses of benthos to hypoxia depend on the duration, predictability, and intensity of oxygen depletion and on whether H₂S is formed. Under suboxic conditions, large mats of filamentous sulfide oxidizing bacteria cover the seabed and consume sulfide. They are hypothesized to provide a detoxified microhabitat for eukaryotic benthic communities. Calcareous foraminiferans and nematodes are particularly tolerant of low oxygen concentrations and may attain high densities and dominance, often in association with microbial mats. When oxygen is sufficient to support metazoans, small, soft-bodied invertebrates (typically annelids, often with short generation times and elaborate branchial structures, predominate. Large taxa are more sensitive than small taxa to hypoxia. Crustaceans and echinoderms are typically more sensitive to hypoxia, with lower oxygen thresholds, than annelids, sipunculans, molluscs and cnidarians. Mobile fish and shellfish will migrate away from low-oxygen areas. Within a species, early life stages may be more subject to oxygen stress than older life stages.

Hypoxia alters both the structure and function of benthic communities, but effects may differ with regional hypoxia history. Human-caused hypoxia is generally linked to eutrophication, and occurs adjacent to watersheds with large populations or agricultural activities. Many occurrences are seasonal, within estuaries, fjords or enclosed seas of the North Atlantic and the NW Pacific Oceans. Benthic faunal responses, elicited at oxygen levels below

Application of Synchrotron Methods to Assess the Uptake of Roadway-Derived Zn by Earthworms in an Urban Soil

International Nuclear Information System (INIS)

Lev, S.; Landa, E.; Szlavecz, K.; Casey, R.; Snodgrass, J.

2008-01-01

The impact of human activities on biogeochemical cycles in terrestrial environments is nowhere more apparent than in urban landscapes. Trace metals, collected on roadways and transported by storm water, may contaminate soils and sediments associated with storm water management systems. These systems will accumulate metals and associated sediments may reach toxic levels for terrestrial and aquatic organisms using the retention basins as habitat. The fate and bioavailability of these metals once deposited is poorly understood. Here we present results from a dose-response experiment that examines the application of synchrotron X-ray fluorescence methods (μ-SXRF) to test the hypothesis that earthworms will bio-accumulate Zn in a roadway-dust contaminated soil system providing a potential pathway for roadway contaminants into the terrestrial food web, and that the storage and distribution of Zn will change with the level of exposure reflecting the micronutrient status of Zn. Lumbricus friendi was exposed to Zn-bearing roadway dust amended to a field soil at six target concentrations ranging from background levels (45 mg/kg Zn) to highly contaminated levels (460 mg/kg Zn) designed to replicate the observed concentration range in storm-water retention basin soils. After a 30 day exposure, Zn storage in the intestine is positively correlated with dose and there is a change in the pattern of Zn storage within the intestine. This relationship is only clear when μ-SXRF Zn map data is coupled with a traditional toxicological approach, and suggests that the gut concentration in L. friendi is a better indicator of Zn bioaccumulation and storage than the total body burden.

Can plastic bag derived-microplastics act as vectors for metal exposure in terrestrial invertebrates?

Science.gov (United States)

E Hodson, Mark; Duffus-Hodson, Calum A.; Prendergast-Miller, Miranda; Thorpe, Karen

2017-04-01

Microplastics are widely reported contaminants in marine and freshwater ecosystems and studies have shown that they can be ingested by aquatic organisms and lead to potential negative effects on health. The effects can arise from the physical effects of the plastics (e.g. food displacement and blockages of the digestive tract) and from their potential to adsorb contaminants, primarily organic compounds, resulting in an increased exposure of the organism to toxic contaminants. Studies are beginning to emerge that also show a high abundance of microplastics in the terrestrial environment but there remains a lack of data on the impacts of these terrestrial microplastics or their interaction with other terrestrial pollutants. We conducted Zn adsorption experiments using HDPE microplastics, derived from plastic bags. Zinc adsorption to microplastics was similar to that observed in soils, but in the presence of both soil and microplastics, preferential adsorption onto the soil was observed. In desorption experiments, desorption of Zn from microplastics and soils was minimal (soils. In earthworm exposure experiments Lumbricus terrestris earthworms cultivated in soils containing 0.35% by mass of Zn-bearing plastic (236 - 4505 mg kg-1) ingested the microplastics with no evidence for either preferential feeding or avoidance. There was no evidence for an accumulation of the microplastics in the earthworm gut or for signs of toxicity. Our experiments demonstrate that earthworms will ingest microplastics and that microplastics can adsorb metals and act as vectors for metal exposure in soil invertebrates. However, for Zn, the risk associated with this exposure appears to be minimal.

Assessment of trace element accumulation by earthworms in an orchard soil remediation study using soil amendments

Science.gov (United States)

Centofantia, Tiziana; Chaney, Rufus L.; Beyer, W. Nelson; McConnell, Laura L.; Davis, A. P.; Jackson, Dana

2016-01-01

This study assessed potential bioaccumulation of various trace elements in grasses and earthworms as a consequence of soil incorporation of organic amendments for in situ remediation of an orchard field soil contaminated with organochlorine and Pb pesticide residues. In this experiment, four organic amendments of differing total organic carbon content and quality (two types of composted manure, composted biosolids, and biochar) were added to a contaminated orchard field soil, planted with two types of grasses, and tested for their ability to reduce bioaccumulation of organochlorine pesticides and metals in earthworms. The experiment was carried out in 4-L soil microcosms in a controlled environment for 90 days. After 45 days of orchardgrass or perennial ryegrass growth, Lumbricus terrestris L. were introduced to the microcosms and exposed to the experimental soils for 45 days before the experiment was ended. Total trace element concentrations in the added organic amendments were below recommended safe levels and their phytoavailablity and earthworm availability remained low during a 90-day bioremediation study. At the end of the experiment, total tissue concentrations of Cu, Cd, Mn, Pb, and Zn in earthworms and grasses were below recommended safe levels. Total concentrations of Pb in test soil were similar to maximum background levels of Pb recorded in soils in the Eastern USA (100 mg kg−1 d.w.) because of previous application of orchard pesticides. Addition of aged dairy manure compost and presence of grasses was effective in reducing the accumulation of soil-derived Pb in earthworms, thus reducing the risk of soil Pb entry into wildlife food chains.

Electron microscope studies

International Nuclear Information System (INIS)

Crewe, A.V.; Kapp, O.H.

1991-01-01

This year our laboratory has continued to make progress in the design of electron-optical systems, in the study of structure-function relationships of large multi-subunit proteins, in the development of new image processing software and in achieving a workable sub-angstrom STEM. We present an algebraic approach to the symmetrical Einzel (unipotential) lens wherein we simplify the analysis by specifying a field shape that meets some preferred set of boundary or other conditions and then calculate the fields. In a second study we generalize this approach to study of three element electrostatic lenses of which the symmetrical Einzel lens is a particular form. The purpose is to develop a method for assisting in the design of a lens for a particular purpose. In our biological work we study a stable and functional dodecameric complex of globin chains from the hemoglobin of Lumbricus terrestris. This is a complex lacking the ''linker'' subunit first imaged in this lab and required for maintenance of the native structure. In addition, we do a complete work-up on the hemoglobin of the marine polychaete Eudistylia vancouverii demonstrating the presence of a hierarchy of globin complexes. We demonstrate stable field-emission in the sub-angstrom STEM and the preliminary alignment of the beam. We continue our exploration of a algorithms for alignment of sequences of protein and DNA. Our computer facilities now include four second generation RISC workstations and we continue to take increasing advantage of the floating-point and graphical performance of these devices

Crystallization and preliminary structural analysis of the giant haemoglobin from Glossoscolex paulistus at 3.2 Å

Energy Technology Data Exchange (ETDEWEB)

Bachega, J. F. R., E-mail: bachega@ursa.if.sc.usp.br; Bleicher, L.; Horjales, E. R. [Centro de Biotecnologia Molecular Estrutural, Instituto de Fisica de São Carlos, Universidade de São Paulo, São Carlos - SP, CEP 13566-590 (Brazil); Santiago, P. S. [Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos - SP, CEP 13566-590 (Brazil); Garratt, R. C. [Centro de Biotecnologia Molecular Estrutural, Instituto de Fisica de São Carlos, Universidade de São Paulo, São Carlos - SP, CEP 13566-590 (Brazil); Tabak, M., E-mail: bachega@ursa.if.sc.usp.br [Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos - SP, CEP 13566-590 (Brazil)

2011-01-01

Diffraction data to 3.2 Å from crystals of the 3.6 MDa erythrocruorin from a Brazilian earthworm represent the highest resolution reported to date for similar complexes. An unambiguous molecular replacement solution shows the particle to belong to the type I class. Glossoscolex paulistus is a free-living earthworm encountered in south-east Brazil. Its oxygen transport requirements are undertaken by a giant extracellular haemoglobin, or erythrocruorin (HbGp), which has an approximate molecular mass of 3.6 MDa and, by analogy with its homologue from Lumbricus terrestris (HbLt), is believed to be composed of a total of 180 polypeptide chains. In the present work the full 3.6 MDa particle in its cyanomet state was purified and crystallized using sodium citrate or PEG8000 as precipitant. The crystals contain one-quarter of the full particle in the asymmetric unit of the I222 cell and have parameters of a = 270.8 Å, b = 320.3 Å and c = 332.4 Å. Diffraction data were collected to 3.15 Å using synchrotron radiation on beamline X29A at the Brookhaven National Laboratory and represent the highest resolution data described to date for similar erythrocruorins. The structure was solved by molecular replacement using a search model corresponding to one-twelfth of its homologue from HbLt. This revealed that HbGp belongs to the type I class of erythrocruorins and provided an interpretable initial electron density map in which many features including the haem groups and disulfide bonds could be identified.

Application of Synchrotron Methods to Assess the Uptake of Roadway-Derived Zn by Earthworms in an Urban Soil

Energy Technology Data Exchange (ETDEWEB)

Lev,S.; Landa, E.; Szlavecz, K.; Casey, R.; Snodgrass, J.

2008-01-01

The impact of human activities on biogeochemical cycles in terrestrial environments is nowhere more apparent than in urban landscapes. Trace metals, collected on roadways and transported by storm water, may contaminate soils and sediments associated with storm water management systems. These systems will accumulate metals and associated sediments may reach toxic levels for terrestrial and aquatic organisms using the retention basins as habitat. The fate and bioavailability of these metals once deposited is poorly understood. Here we present results from a dose-response experiment that examines the application of synchrotron X-ray fluorescence methods ({mu}-SXRF) to test the hypothesis that earthworms will bio-accumulate Zn in a roadway-dust contaminated soil system providing a potential pathway for roadway contaminants into the terrestrial food web, and that the storage and distribution of Zn will change with the level of exposure reflecting the micronutrient status of Zn. Lumbricus friendi was exposed to Zn-bearing roadway dust amended to a field soil at six target concentrations ranging from background levels (45 mg/kg Zn) to highly contaminated levels (460 mg/kg Zn) designed to replicate the observed concentration range in storm-water retention basin soils. After a 30 day exposure, Zn storage in the intestine is positively correlated with dose and there is a change in the pattern of Zn storage within the intestine. This relationship is only clear when {mu}-SXRF Zn map data is coupled with a traditional toxicological approach, and suggests that the gut concentration in L. friendi is a better indicator of Zn bioaccumulation and storage than the total body burden.

Osedax borings in fossil marine bird bones

Science.gov (United States)

Kiel, Steffen; Kahl, Wolf-Achim; Goedert, James L.

2011-01-01

The bone-eating marine annelid Osedax consumes mainly whale bones on the deep-sea floor, but recent colonization experiments with cow bones and molecular age estimates suggesting a possible Cretaceous origin of Osedax indicate that this worm might be able grow on a wider range of substrates. The suggested Cretaceous origin was thought to imply that Osedax could colonize marine reptile or fish bones, but there is currently no evidence that Osedax consumes bones other than those of mammals. We provide the first evidence that Osedax was, and most likely still is, able to consume non-mammalian bones, namely bird bones. Borings resembling those produced by living Osedax were found in bones of early Oligocene marine flightless diving birds (family Plotopteridae). The species that produced these boreholes had a branching filiform root that grew to a length of at least 3 mm, and lived in densities of up to 40 individuals per square centimeter. The inclusion of bird bones into the diet of Osedax has interesting implications for the recent suggestion of a Cretaceous origin of this worm because marine birds have existed continuously since the Cretaceous. Bird bones could have enabled this worm to survive times in the Earth's history when large marine vertebrates other than fish were rare, specifically after the disappearance of large marine reptiles at the end-Cretaceous mass extinction event and before the rise of whales in the Eocene.

Revelation and cloning of valinomycin synthetase genes in Streptomyces lavendulae ACR-DA1 and their expression analysis under different fermentation and elicitation conditions.

Science.gov (United States)

Sharma, Richa; Jamwal, Vijaylakshmi; Singh, Varun P; Wazir, Priya; Awasthi, Praveen; Singh, Deepika; Vishwakarma, Ram A; Gandhi, Sumit G; Chaubey, Asha

2017-07-10

Streptomyces species are amongst the most exploited microorganisms due to their ability to produce a plethora of secondary metabolites with bioactive potential, including several well known drugs. They are endowed with immense unexplored potential and substantial efforts are required for their isolation as well as characterization for their bioactive potential. Unexplored niches and extreme environments are host to diverse microbial species. In this study, we report Streptomyces lavendulae ACR-DA1, isolated from extreme cold deserts of the North Western Himalayas, which produces a macrolactone antibiotic, valinomycin. Valinomycin is a K + ionophoric non-ribosomal cyclodepsipeptide with a broad range of bioactivities including antibacterial, antifungal, antiviral and cytotoxic/anticancer activities. Production of valinomycin by the strain S. lavendulae ACR-DA1 was studied under different fermentation conditions like fermentation medium, temperature and addition of biosynthetic precursors. Synthetic medium at 10°C in the presence of precursors i.e. valine and pyruvate showed enhanced valinomycin production. In order to assess the impact of various elicitors, expression of the two genes viz. vlm1 and vlm2 that encode components of heterodimeric valinomycin synthetase, was analyzed using RT-PCR and correlated with quantity of valinomycin using LC-MS/MS. Annelid, bacterial and yeast elicitors increased valinomycin production whereas addition of fungal and plant elicitors down regulated the biosynthetic genes and reduced valinomycin production. This study is also the first report of valinomycin biosynthesis by Streptomyces lavendulae. Copyright © 2017 Elsevier B.V. All rights reserved.

NMDA receptor expression and C terminus structure in the rotifer Brachionus plicatilis and long-term potentiation across the Metazoa.

Science.gov (United States)

Kenny, Nathan J; Dearden, Peter K

2013-12-01

The C termini of N-methyl-D-aspartate (NMDA) receptor NR2 subunits are thought to play a major role in the molecular establishment of memory across the Bilateria, via the phenomenon known as long-term potentiation (LTP). Despite their long history of use as models in the study of memory, the expression and structure of the NR2 subunit in the Lophotrochozoa has remained uncategorized. Here, we report the phylogenic relationships of NR subunits across the Bilateria, and the cloning and in situ analysis of expression of NMDA NR1 and NR2 subunits in the monogont rotifer Brachionus plicatilis. RNA in situ hybridization suggests expression of NMDA receptor subunits in B. plicatilis is neural, consistent with expression observed in other species, and ours is the first report confirming NR2 expression in the lophotrochozoan clade. However, the single NR2 subunit identified in B. plicatilis was found to lack the long C terminal domain found in vertebrates, which is believed to modulate LTP. Further investigation revealed that mollusc and annelid NR2 subunits possess long intracellular C terminal domains. As data from molluscs (and particularly Aplysia californica) are the basis for much of our understanding of LTP, understanding how these diverse lophotrochozoan C termini function in vivo will have many implications for how we consider the evolution of the molecular control of learning and memory across the Metazoa as a whole and interpret the results of experiments into this vital component of cognition.

Myxozoan infections of caecilians demonstrate broad host specificity and indicate a link with human activity.

Science.gov (United States)

Hartigan, Ashlie; Wilkinson, Mark; Gower, David J; Streicher, Jeffrey W; Holzer, Astrid S; Okamura, Beth

2016-05-01

Myxozoans are parasitic cnidarians that infect a wide variety of hosts. Vertebrates typically serve as intermediate hosts whereas definitive hosts are invertebrates, including annelids and bryozoans. Myxozoans are known to exploit species in two of the three extant amphibian orders (Anura: frogs and toads; Caudata: newts and salamanders). Here we use museum collections to determine, to our knowledge for the first time, whether myxozoans also exploit the third amphibian order (Gymnophiona: caecilians). Caecilians are a poorly known group of limbless amphibians, the ecologies of which range from aquatic to fully terrestrial. We examined 12 caecilian species in seven families (148 individuals total) characterised by a diversity of ecologies and life histories. Using morphological and molecular surveys, we discovered the presence of the myxozoan Cystodiscus axonis in two South American species (one of seven examined families) of aquatic caecilians - Typhlonectes natans and Typhlonectes compressicauda. All infected caecilians had been maintained in captivity in the United Kingdom prior to their preservation. Cystodiscus axonis is known from several Australian frog species and its presence in caecilians indicates a capacity for infecting highly divergent amphibian hosts. This first known report of myxozoan infections in caecilians provides evidence of a broad geographic and host range. However, the source of these infections remains unknown and could be related to exposure in South America, the U.K. or to conditions in captivity. Copyright © 2016 Australian Society for Parasitology Inc. All rights reserved.

Meiobenthos and nematode assemblages from different deep-sea habitats of the Strait of Sicily (Central Mediterranean Sea

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R. SANDULLI

2015-05-01

Full Text Available Much attention is currently devoted at upgrading our knowledge on biodiversity and functioning of deep water ecosystems. Information is constantly enriched by researchers, even from basins as the long-studied Mediterranean Sea. In such a perspective, we studied meiobenthic and nematode communities inhabiting muddy sediments from three different habitats at bathyal depths in the Strait of Sicily: a cold-water coral site (CS in the Maltese Coral Province, a muddy bottom in the same area (MS, and a hydrocarbon imprinted pockmark site (PS in the Gela Basin. The average meiofauna density at CS (1343 ind/10 cm2 and MS (1804 ind/10 cm2 is much higher than that reported in literature for similar habitats; it is also markedly more elevated than that recorded at PS (224 ind/10 cm2. Although nematodes of the three sites show different abundances, they share similar assemblage structure. Nematodes (avg. 86% and copepods (avg. 9.3% were the most abundant meiofaunal taxa at all sites followed by annelids, kinorhynchs and turbellarians. Nematodes were composed by 21 families and 46 genera, with Terschellingia, as most abundant genus (12.4%, followed by Microlaimus (11%, Daptonema (11%, Thalassomonhystera (10.8%, Acantholaimus (9.5% and Sabatieria (8.7%. The genera Thalassomonhystera, Terschellingia, Microlaimus, Daptonema, Chromadorita, Sabatieria, and Anticoma display a dominance in at least one station. The taxonomic structure of meiofaunal communities of the studied sites is rather similar but differences in relative abundance are evident.

Advanced analytical method of nereistoxin using mixed-mode cationic exchange solid-phase extraction and GC/MS.

Science.gov (United States)

Park, Yujin; Choe, Sanggil; Lee, Heesang; Jo, Jiyeong; Park, Yonghoon; Kim, Eunmi; Pyo, Jaesung; Jung, Jee H

2015-07-01

Nereistoxin(NTX) was originated from a marine annelid worm Lumbriconereis heteropoda and its analogue pesticides including cartap, bensultap, thiocyclam and thiobensultap have been commonly used in agriculture, because of their low toxicity and high insecticidal activity. However, NTX has been reported about its inhibitory neuro toxicity in human and animal body, by blocking nicotinic acetylcholine receptor and it cause significant neuromuscular toxicity, resulting in respiratory failure. We developed a new method to determine NTX in biological fluid. The method involves mixed-mode cationic exchange based solid phase extraction and gas chromatography/mass spectrometry for final identification and quantitative analysis. The limit of detection and recovery were substantially better than those of other methods using liquid-liquid extraction or headspace solid phase microextraction. The good recoveries (97±14%) in blood samples were obtained and calibration curves over the range 0.05-20 mg/L have R2 values greater than 0.99. The developed method was applied to a fatal case of cartap intoxication of 74 years old woman who ingested cartap hydrochloride for suicide. Cartap and NTX were detected from postmortem specimens and the cause of the death was ruled to be nereistoxin intoxication. The concentrations of NTX were 2.58 mg/L, 3.36 mg/L and 1479.7 mg/L in heart, femoral blood and stomach liquid content, respectively. The heart blood/femoral blood ratio of NTX was 0.76. Copyright © 2015. Published by Elsevier Ireland Ltd.

Subsurface earthworm casts can be important soil microsites specifically influencing the growth of grassland plants.

Science.gov (United States)

Zaller, Johann G; Wechselberger, Katharina F; Gorfer, Markus; Hann, Patrick; Frank, Thomas; Wanek, Wolfgang; Drapela, Thomas

Earthworms (Annelida: Oligochaeta) deposit several tons per hectare of casts enriched in nutrients and/or arbuscular mycorrhizal fungi (AMF) and create a spatial and temporal soil heterogeneity that can play a role in structuring plant communities. However, while we begin to understand the role of surface casts, it is still unclear to what extent plants utilize subsurface casts. We conducted a greenhouse experiment using large mesocosms (volume 45 l) to test whether (1) soil microsites consisting of earthworm casts with or without AMF (four Glomus taxa) affect the biomass production of 11 grassland plant species comprising the three functional groups grasses, forbs, and legumes, (2) different ecological groups of earthworms (soil dwellers- Aporrectodea caliginosa vs. vertical burrowers- Lumbricus terrestris ) alter potential influences of soil microsites (i.e., four earthworms × two subsurface microsites × two AMF treatments). Soil microsites were artificially inserted in a 25-cm depth, and afterwards, plant species were sown in a regular pattern; the experiment ran for 6 months. Our results show that minute amounts of subsurface casts (0.89 g kg -1 soil) decreased the shoot and root production of forbs and legumes, but not that of grasses. The presence of earthworms reduced root biomass of grasses only. Our data also suggest that subsurface casts provide microsites from which root AMF colonization can start. Ecological groups of earthworms did not differ in their effects on plant production or AMF distribution. Taken together, these findings suggest that subsurface earthworm casts might play a role in structuring plant communities by specifically affecting the growth of certain functional groups of plants.

DOMESTICATION OF FRESHWATER PUFFER FISH OR BUNTAL (Tetraodon palembangensis

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I Wayan Subamia

2008-12-01

Full Text Available The Research Institute for Freshwater Ornamental Fish Culture has been conducting domestication research since 2004 on adult freshwater puffer fish or buntal broodstock in which the fish were reared in aquaria and fed with small feed fish teri (anchovy and earthworm (Lumbricus sp.. The domestication of freshwater puffer fish or buntal has resulted in successful environmental adaptation and reproductive ability of the fish and further rearing of its fry. The adaptive ability was indicated by its high survival rate, good growth and development, and the reproductive success in spawning, egg production, hatching as well as growing of the larvae to fry stages. The mature gonad stage of the fish was reached at an average body weight of 150 g with a reproductive period of 5 months. The spawning occurred naturally and the eggs were gradually released at interval periods of 14—18 days with egg production rates of 1,000—1,900 eggs per spawning. The highest egg fertilization rate was 96%, with the highest egg hatching rate of 78.6%. Hatching process took place on the 6th to 13th days after spawning process. The surviving larvae began feeding filtered natural foods Moina sp. on the 3rd day up to the 6th day, whereas unfiltered Moina sp. was given from the 7th to 14th days. The fish were fed the live feed Culex sp. from the 15th to 30th days. In the following period the fish was fed earthworm and small feed fish teri (anchovy.

Using species-specific enriched stable isotopes to study the effect of fresh mercury inputs in soil-earthworm systems.

Science.gov (United States)

Álvarez, C Rodríguez; Jiménez-Moreno, M; Bernardo, F J Guzmán; Martín-Doimeadios, R C Rodríguez; Nevado, J J Berzas

2018-01-01

The fate of mercury (Hg) in the soil-earthworm system is still far from being fully understood, especially regarding recurrent and challenging questions about the importance of the reactivity of exogenous Hg species. Thus, to predict the potential effect of Hg inputs in terrestrial ecosystems, it is necessary to evaluate separately the reactivity of the endogenous and exogenous Hg species and, for this purpose, the use of enriched stable isotope tracers is a promising tool. In the present work, earthworms (Lumbricus terrestris) were exposed to historically Hg contaminated soils from the Almadén mining district, Spain. The soils were either non-spiked, which contain only endogenous or native Hg naturally occurring in the soil, or spiked with isotopically enriched inorganic Hg ( 199 IHg), representing exogenous or spiked Hg apart from the native one. The differential reactivity of endogenous and exogenous Hg in the soil conditioned the processes of methylation, mobilization, and assimilation of inorganic Hg by earthworms. Both endogenous and exogenous Hg species also behave distinctly regarding their bioaccumulation in earthworms, as suggested by the bioaccumulation factors, being the endogenous methylmercury (MeHg) the species more readily bioaccumulated by earthworms and in a higher extent. To the best of our knowledge, this work demonstrates for the first time the potential of enriched stable isotopes to study the effects of fresh Hg inputs in soil-earthworm systems. The findings of this work can be taken as a case study on the dynamics of Hg species in complex terrestrial systems and open a new door for future experiments. Copyright © 2017 Elsevier Inc. All rights reserved.

Novel [NiFe]- and [FeFe]-hydrogenase gene transcripts indicative of active facultative aerobes and obligate anaerobes in earthworm gut contents.

Science.gov (United States)

Schmidt, Oliver; Wüst, Pia K; Hellmuth, Susanne; Borst, Katharina; Horn, Marcus A; Drake, Harold L

2011-09-01

The concomitant occurrence of molecular hydrogen (H(2)) and organic acids along the alimentary canal of the earthworm is indicative of ongoing fermentation during gut passage. Fermentative H(2) production is catalyzed by [FeFe]-hydrogenases and group 4 [NiFe]-hydrogenases in obligate anaerobes (e.g., Clostridiales) and facultative aerobes (e.g., Enterobacteriaceae), respectively, functional groups that might respond differently to contrasting redox conditions. Thus, the objectives of this study were to assess the redox potentials of the alimentary canal of Lumbricus terrestris and analyze the hydrogenase transcript diversities of H(2) producers in glucose-supplemented gut content microcosms. Although redox potentials in the core of the alimentary canal were variable on an individual worm basis, average redox potentials were similar. The lowest redox potentials occurred in the foregut and midgut regions, averaging 40 and 110 mV, respectively. Correlation plots between hydrogenase amino acid sequences and 16S rRNA gene sequences indicated that closely related hydrogenases belonged to closely related taxa, whereas distantly related hydrogenases did not necessarily belong to distantly related taxa. Of 178 [FeFe]-hydrogenase gene transcripts, 177 clustered in 12 Clostridiales-affiliated operational taxonomic units, the majority of which were indicative of heretofore unknown hydrogenases. Of 86 group 4 [NiFe]-hydrogenase gene transcripts, 79% and 21% were affiliated with organisms in the Enterobacteriaceae and Aeromonadaceae, respectively. The collective results (i) suggest that fermenters must cope with variable and moderately oxidative redox conditions along the alimentary canal, (ii) demonstrate that heretofore undetected hydrogenases are present in the earthworm gut, and (iii) corroborate previous findings implicating Clostridiaceae and Enterobacteriaceae as active fermentative taxa in earthworm gut content.

Plant and animal species composition and heavy metal content in fly ash ecosystems

International Nuclear Information System (INIS)

Brieger, G.; Wells, J.R.; Hunter, R.D.

1992-01-01

Plant and animal species present on a coal fly ash slurry pond site and a dry deposit site were surveyed and sampled during a two-day period in October. Elemental analyses were determined for most of the species encountered. A total of 48 plant species were observed on the two sites, with 35 species on the wet site, and 20 on the dry site. Eighteen terrestrial and 7 aquatic animal species were found on the wet site, exclusive of vertebrates which were not studied with the exception of a carp (Cyprinus carpio). Eleven terrestrial invertebrate and one aquatic species were observed on the dry site. Neutron activation analysis was carried out for: Se, Hg, Cr, Ni, Zn, Co, Sb, Cd, and As. Using literature values for phytotoxicity, it is concluded that, in general, plants did not accumulate toxic levels of metals. Only one plant (Impatiens biflora Willd.) showed a significant level of Cd. Of 20 plants analyzed on the wet site, 10 had excessive Se concentrations (>5 ppm); on the dry site 6 out of 18 had high Se values. In animals (Gryllus sp.; Melanoplus sp.; Trachelipus sp; Lumbricus terrestris; Physa integra; Cyprinus carpio) the trace metal concentration was generally in between that of control animals and that of the fly ash itself. One exception included Zn, which, although the most variable element examined, was concentrated in all the terrestrial animals to levels higher than in fly ash. Crickets are the most consistent bioconcentrators with Cr, Se, and Zn at higher levels than for control animals. All animals species studied accumulated Se compared to controls. 48 refs., 6 tabs

Transfer of elements relevant to nuclear fuel cycle from soil to boreal plants and animals in experimental meso- and microcosms

Energy Technology Data Exchange (ETDEWEB)

Tuovinen, Tiina S., E-mail: tiina.tuovinen@uef.fi [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland); Kasurinen, Anne; Häikiö, Elina [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland); Tervahauta, Arja [Department of Biology, University of Eastern Finland, P.O. Box FI-70211, Kuopio (Finland); Makkonen, Sari; Holopainen, Toini; Juutilainen, Jukka [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland)

2016-01-01

Uranium (U), cobalt (Co), molybdenum (Mo), nickel (Ni), lead (Pb), thorium (Th) and zinc (Zn) occur naturally in soil but their radioactive isotopes can also be released into the environment during the nuclear fuel cycle. The transfer of these elements was studied in three different trophic levels in experimental mesocosms containing downy birch (Betula pubescens), narrow buckler fern (Dryopteris carthusiana) and Scandinavian small-reed (Calamagrostis purpurea ssp. Phragmitoides) as producers, snails (Arianta arbostorum) as herbivores, and earthworms (Lumbricus terrestris) as decomposers. To determine more precisely whether the element uptake of snails is mainly via their food (birch leaves) or both via soil and food, a separate microcosm experiment was also performed. The element uptake of snails did not generally depend on the presence of soil, indicating that the main uptake route was food, except for U, where soil contact was important for uptake when soil U concentration was high. Transfer of elements from soil to plants was not linear, i.e. it was not correctly described by constant concentration ratios (CR) commonly applied in radioecological modeling. Similar nonlinear transfer was found for the invertebrate animals included in this study: elements other than U were taken up more efficiently when element concentration in soil or food was low. - Highlights: • We studied transfer of elements in boreal food chain using meso- and microcosms. • Elements related to nuclear fuel cycle and mining were examined. • Higher uptake at lower soil concentrations was observed for primary producers. • Snails took up elements mainly from food but for U also soil was an element source. • Non-linear transfer of essential elements was observed for herbivore and decomposer.

Children's perceptions of rainforest biodiversity: which animals have the lion's share of environmental awareness?

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Jake L Snaddon

Full Text Available Globally, natural ecosystems are being lost to agricultural land at an unprecedented rate. This land-use often results in significant reductions in abundance and diversity of the flora and fauna as well as alterations in their composition. Despite this, there is little public perception of which taxa are most important in terms of their total biomass, biodiversity or the ecosystem services they perform. Such awareness is important for conservation, as without appreciation of their value and conservation status, species are unlikely to receive adequate conservation protection. We investigated children's perceptions of rainforest biodiversity by asking primary-age children, visiting the University Museum of Zoology, Cambridge to draw their ideal rainforest. By recording the frequency at which children drew different climatic, structural, vegetative and faunal components of the rainforest, we were able to quantify children's understanding of a rainforest environment. We investigated children's perceptions of rainforest biodiversity by comparing the relative numbers of the taxa drawn with the actual contributions made by these taxa to total rainforest biomass and global biodiversity. We found that children have a sophisticated view of the rainforest, incorporating many habitat features and a diverse range of animals. However, some taxa were over-represented (particularly mammals, birds and reptiles and others under-represented (particularly insects and annelids relative to their contribution to total biomass and species richness. Scientists and naturalists must continue to emphasise the diversity and functional importance of lesser-known taxa through public communication and outdoor events to aid invertebrate conservation and to ensure that future generations are inspired to become naturalists themselves.

First record of the polychaete Ficopomatus uschakovi (Pillai, 1960 (Annelida, Serpulidae in the Colombian Caribbean, South America

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Catalina Arteaga-Florez

2014-01-01

Full Text Available The genus Ficopomatus (Serpulidae consists of sessile, tubicolous polychaete annelid worms that may colonize a diversity of substrata, and tolerate considerable variations in salinity. Thus, members of this genus, including Ficopomatus uschakovi, in some cases are exotic and maybe invasive. The purpose of our research was to collect and identify marine organisms associated with the submerged roots of mangrove trees in the Gulf of Urabá, Colombian Caribbean, South America. Within the Gulf, there is a well-developed forest of the Red Mangrove, Rhizophora mangle, along the margins of El Uno Bay. We sampled the roots of R. mangle from five stations of the bay, and we identified specimens of F. uschakovi from each of those stations. Ficopomatus uschakovi was found to be more abundant in regions of the bay that exhibit the lowest salinity. Based on a morphological comparison of the present specimens with the original species description, revised descriptions, and other records from the Indo-West Pacific, Mexican Pacific, and Venezuelan and Brazilian Caribbean, we suggest that F. uschakovi has a broader geographical distribution. Furthermore, because of this broad distribution, and the observed tolerance for low salinity in our study, we also suggest that F. uschakovi is a euryhaline species. It is also likely that F. uschakovi will be found in other localities in the Gulf of Urabá, and in other regions of the Colombian Caribbean. Thus, this record extends the distribution of the species to the Colombian Caribbean, giving the species a continuous distribution across the northern coast of South America.

Natural invertebrate hosts of iridoviruses (Iridoviridae)

Energy Technology Data Exchange (ETDEWEB)

Williams, Trevor [Instituto de Ecologia A.C., Veracruz (Mexico)]. E-mail: trevor.williams@inecol.edu.mx

2008-11-15

Invertebrate iridescent viruses (IIVs) are icosahedral DNA viruses that infect invertebrates, mainly insects and terrestrial isopods, in damp and aquatic habitats. Exhaustive searches of databases resulted in the identification of 79 articles reporting 108 invertebrate species naturally infected by confirmed or putative iridoviruses. Of these, 103 (95%) were arthropods and the remainder were molluscs, an annelid worm and a nematode. Nine species were from marine habitats. Of the 99 non-marine species, 49 were from terrestrial habitats and 50 were aquatic, especially the aquatic stages of Diptera (44 species). The abundance of records from species of Aedes, Ochlerotatus and Psorophora contrasts markedly with a paucity of records from species of Anopheles, Culex and Culiseta. Records from terrestrial isopods are numerous (19 species), although the diversity of IIVs that infect them is mostly unstudied. IIV infections have been reported from every continent, except Antarctica, but there are few records from Africa, southern Asia and Latin America. Most reports describe patent IIV infections as rare whereas inapparent (covert) infection may be common in certain species. The relationship between particle size and iridescent colour of the host is found to be consistent with optical theory in the great majority of cases. Only 24 reported IIVs from insect hosts have partial characterization data and only two have been subjected to complete genome sequencing. I show that the rate of publication on IIVs has slowed from 1990 to the present, and I draw a number of conclusions and suggestions from the host list and make recommendations for future research efforts. (author)

Spiralian phylogeny informs the evolution of microscopic lineages.

Science.gov (United States)

Laumer, Christopher E; Bekkouche, Nicolas; Kerbl, Alexandra; Goetz, Freya; Neves, Ricardo C; Sørensen, Martin V; Kristensen, Reinhardt M; Hejnol, Andreas; Dunn, Casey W; Giribet, Gonzalo; Worsaae, Katrine

2015-08-03

Despite rapid advances in the study of metazoan evolutionary history [1], phylogenomic analyses have so far neglected a number of microscopic lineages that possess a unique combination of characters and are thus informative for our understanding of morphological evolution. Chief among these lineages are the recently described animal groups Micrognathozoa and Loricifera, as well as the two interstitial "Problematica" Diurodrilus and Lobatocerebrum [2]. These genera show a certain resemblance to Annelida in their cuticle and gut [3, 4]; however, both lack primary annelid characters such as segmentation and chaetae [5]. Moreover, they show unique features such as an inverted body-wall musculature or a novel pharyngeal organ. This and their ciliated epidermis have led some to propose relationships with other microscopic spiralians, namely Platyhelminthes, Gastrotricha, and in the case of Diurodrilus, with Micrognathozoa [6, 7]-lineages that are grouped by some analyses into "Platyzoa," a clade whose status remains uncertain [1, 8-11]. Here, we assess the interrelationships among the meiofaunal and macrofaunal members of Spiralia using 402 orthologs mined from genome and transcriptome assemblies of 90 taxa. Lobatocerebrum and Diurodrilus are found to be deeply nested members of Annelida, and unequivocal support is found for Micrognathozoa as the sister group of Rotifera. Analyses using site-heterogeneous substitution models further recover a lophophorate clade and position Loricifera + Priapulida as sister group to the remaining Ecdysozoa. Finally, with several meiofaunal lineages branching off early in the diversification of Spiralia, the emerging concept of a microscopic, acoelomate, direct-developing ancestor of Spiralia is reviewed. Copyright © 2015 Elsevier Ltd. All rights reserved.

Phylogeny and mitochondrial gene order variation in Lophotrochozoa in the light of new mitogenomic data from Nemertea

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von Döhren Jörn

2009-08-01

Full Text Available Abstract Background The new animal phylogeny established several taxa which were not identified by morphological analyses, most prominently the Ecdysozoa (arthropods, roundworms, priapulids and others and Lophotrochozoa (molluscs, annelids, brachiopods and others. Lophotrochozoan interrelationships are under discussion, e.g. regarding the position of Nemertea (ribbon worms, which were discussed to be sister group to e.g. Mollusca, Brachiozoa or Platyhelminthes. Mitochondrial genomes contributed well with sequence data and gene order characters to the deep metazoan phylogeny debate. Results In this study we present the first complete mitochondrial genome record for a member of the Nemertea, Lineus viridis. Except two trnP and trnT, all genes are located on the same strand. While gene order is most similar to that of the brachiopod Terebratulina retusa, sequence based analyses of mitochondrial genes place nemerteans close to molluscs, phoronids and entoprocts without clear preference for one of these taxa as sister group. Conclusion Almost all recent analyses with large datasets show good support for a taxon comprising Annelida, Mollusca, Brachiopoda, Phoronida and Nemertea. But the relationships among these taxa vary between different studies. The analysis of gene order differences gives evidence for a multiple independent occurrence of a large inversion in the mitochondrial genome of Lophotrochozoa and a re-inversion of the same part in gastropods. We hypothesize that some regions of the genome have a higher chance for intramolecular recombination than others and gene order data have to be analysed carefully to detect convergent rearrangement events.

Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river.

Science.gov (United States)

Bricheux, Geneviève; Morin, Loïc; Le Moal, Gwenaël; Coffe, Gérard; Balestrino, Damien; Charbonnel, Nicolas; Bohatier, Jacques; Forestier, Christiane

2013-06-01

Despite the recent and significant increase in the study of aquatic microbial communities, little is known about the microbial diversity of complex ecosystems such as running waters. This study investigated the biodiversity of biofilm communities formed in a river with 454 Sequencing™. This river has the particularity of integrating both organic and microbiological pollution, as receiver of agricultural pollution in its upstream catchment area and urban pollution through discharges of the wastewater treatment plant of the town of Billom. Different regions of the small subunit (SSU) ribosomal RNA gene were targeted using nine pairs of primers, either universal or specific for bacteria, eukarya, or archaea. Our aim was to characterize the widest range of rDNA sequences using different sets of polymerase chain reaction (PCR) primers. A first look at reads abundance revealed that a large majority (47-48%) were rare sequences (<5 copies). Prokaryotic phyla represented the species richness, and eukaryotic phyla accounted for a small part. Among the prokaryotic phyla, Proteobacteria (beta and alpha) predominated, followed by Bacteroidetes together with a large number of nonaffiliated bacterial sequences. Bacillariophyta plastids were abundant. The remaining bacterial phyla, Verrucomicrobia and Cyanobacteria, made up the rest of the bulk biodiversity. The most abundant eukaryotic phyla were annelid worms, followed by Diatoms, and Chlorophytes. These latter phyla attest to the abundance of plastids and the importance of photosynthetic activity for the biofilm. These findings highlight the existence and plasticity of multiple trophic levels within these complex biological systems. © 2013 The Authors. Microbiology Open published by John Wiley & Sons Ltd.

Alike but different: the evolution of the Tubifex tubifex species complex (Annelida, Clitellata) through polyploidization.

Science.gov (United States)

Marotta, Roberto; Crottini, Angelica; Raimondi, Elena; Fondello, Cristina; Ferraguti, Marco

2014-04-02

Tubifex tubifex is a widespread annelid characterized by considerable variability in its taxonomic characteristics and by a mixed reproductive strategy, with both parthenogenesis and biparental reproduction. In a molecular phylogenetic analysis, we detected substantial genetic variability among sympatric Tubifex spp. from the Lambro River (Milano, Italy), which we suggested comprise several cryptic species. To gain insights into the evolutionary events that generated this differentiation, we performed a cytogenetic analysis in parallel with a molecular assay. Approximately 80 cocoons of T. tubifex and T. blanchardi were collected and dissected. For each cocoon, we sequenced a fragment of the 16S rRNA from half of the sibling embryos and karyotyped the other half. To generate a robust phylogeny enabling the reconstruction of the evolutionary processes shaping the diversity of these sympatric lineages, we complemented our original 16S rRNA gene sequences with additional COI sequences. The chromosome number distribution was consistent with the presence of at least six sympatric euploid chromosome complements (one diploid, one triploid, three tetraploids and one hexaploid), as confirmed by a FISH assay performed with an homologous 18S rDNA probe. All the worms with 2n = 50 chromosomes belonged to an already identified sibling species of T. tubifex, T. blanchardi. The six euploid sets were coherently arranged in the phylogeny, with each lineage grouping specimens with the same chromosome complement. These results are compatible with the hypothesis that multiple polyploidization events, possibly enhanced by parthenogenesis, may have driven the evolution of the T. tubifex species complex.

Structure and seasonality in a Malaysian mudflat community

Science.gov (United States)

Broom, M. J.

1982-08-01

An assessment of community composition and the functional roles of the dominant species has been carried out in two intertidal areas of Malaysian mudflat dominated by natural populations of the arcid bivalve mollusc Anadara granosa. In addition to A. granosa, organisms of numerical importance are the venerid bivalve Pelecyora trigona, the neogastropod Plicarcularia leptospira, the mesogastropods Stenothyra glabrata and Cerithidea cingulata and the hermit crab Diogenes sp. The mesogastropod Natica maculosa and the neogastropod Thais carinifera may be of some importance to community organization but they are not numerically dominant. Annelids are conspicuous by their absence. The following trophic roles are ascribed to specific members of the community: A. granosa—facultative surface deposit feeder; P. trigona—suspension feeder; P. leptospira—scavenger; C. cingulata—deposit feeder/grazer; S. glabrata—deposit feeder/grazer; N. maculosa—predator; T. carinifera—predator; Diogenes sp.—scavenger/predator. S. glabrata is of particular interest because it appears to fill the niche occupied by mud snails of the genus Hydrobia in temperate mudflat systems. There is evidence of seasonality on the mudflats which points to a spawning of certain forms triggered by the major annual salinity depression at the time of the onset of the north-east monsoon in October/November. Concentrations of benthic chlorophyll a show no obvious signs of a seasonal fluctuation and the seasonality of the primary consumers is not thought to be related to food abundance. However there is some evidence of seasonality of reproduction in N. maculosa which preys on the seasonally reproducing bivalves.

A Polychaete’s Powerful Punch: Venom Gland Transcriptomics of Glycera Reveals a Complex Cocktail of Toxin Homologs

Science.gov (United States)

von Reumont, Björn M.; Richter, Sandy; Hering, Lars; Sykes, Dan; Hetmank, Jörg; Jenner, Ronald A.; Bleidorn, Christoph

2014-01-01

Glycerids are marine annelids commonly known as bloodworms. Bloodworms have an eversible proboscis adorned with jaws connected to venom glands. Bloodworms prey on invertebrates, and it is known that the venom glands produce compounds that can induce toxic effects in animals. Yet, none of these putative toxins has been characterized on a molecular basis. Here we present the transcriptomic profiles of the venom glands of three species of bloodworm, Glycera dibranchiata, Glycera fallax and Glycera tridactyla, as well as the body tissue of G. tridactyla. The venom glands express a complex mixture of transcripts coding for putative toxin precursors. These transcripts represent 20 known toxin classes that have been convergently recruited into animal venoms, as well as transcripts potentially coding for Glycera-specific toxins. The toxins represent five functional categories: Pore-forming and membrane-disrupting toxins, neurotoxins, protease inhibitors, other enzymes, and CAP domain toxins. Many of the transcripts coding for putative Glycera toxins belong to classes that have been widely recruited into venoms, but some are homologs of toxins previously only known from the venoms of scorpaeniform fish and monotremes (stonustoxin-like toxin), turrid gastropods (turripeptide-like peptides), and sea anemones (gigantoxin I-like neurotoxin). This complex mixture of toxin homologs suggests that bloodworms employ venom while predating on macroscopic prey, casting doubt on the previously widespread opinion that G. dibranchiata is a detritivore. Our results further show that researchers should be aware that different assembly methods, as well as different methods of homology prediction, can influence the transcriptomic profiling of venom glands. PMID:25193302

Natural invertebrate hosts of iridoviruses (Iridoviridae)

International Nuclear Information System (INIS)

Williams, Trevor

2008-01-01

Invertebrate iridescent viruses (IIVs) are icosahedral DNA viruses that infect invertebrates, mainly insects and terrestrial isopods, in damp and aquatic habitats. Exhaustive searches of databases resulted in the identification of 79 articles reporting 108 invertebrate species naturally infected by confirmed or putative iridoviruses. Of these, 103 (95%) were arthropods and the remainder were molluscs, an annelid worm and a nematode. Nine species were from marine habitats. Of the 99 non-marine species, 49 were from terrestrial habitats and 50 were aquatic, especially the aquatic stages of Diptera (44 species). The abundance of records from species of Aedes, Ochlerotatus and Psorophora contrasts markedly with a paucity of records from species of Anopheles, Culex and Culiseta. Records from terrestrial isopods are numerous (19 species), although the diversity of IIVs that infect them is mostly unstudied. IIV infections have been reported from every continent, except Antarctica, but there are few records from Africa, southern Asia and Latin America. Most reports describe patent IIV infections as rare whereas inapparent (covert) infection may be common in certain species. The relationship between particle size and iridescent colour of the host is found to be consistent with optical theory in the great majority of cases. Only 24 reported IIVs from insect hosts have partial characterization data and only two have been subjected to complete genome sequencing. I show that the rate of publication on IIVs has slowed from 1990 to the present, and I draw a number of conclusions and suggestions from the host list and make recommendations for future research efforts. (author)

Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils

International Nuclear Information System (INIS)

Centofanti, Tiziana; McConnell, Laura L.; Chaney, Rufus L.; Beyer, W. Nelson; Andrade, Natasha A.; Hapeman, Cathleen J.; Torrents, Alba; Nguyen, Anh; Anderson, Marya O.; Novak, Jeffrey M.

2016-01-01

Performance of compost and biochar amendments for in situ risk mitigation of aged DDT, DDE and dieldrin residues in an old orchard soil was examined. The change in bioavailability of pesticide residues to Lumbricus terrestris L. relative to the unamended control soil was assessed using 4-L soil microcosms with and without plant cover in a 48-day experiment. The use of aged dairy manure compost and biosolids compost was found to be effective, especially in the planted treatments, at lowering the bioavailability factor (BAF) by 18–39%; however, BAF results for DDT in the unplanted soil treatments were unaffected or increased. The pine chip biochar utilized in this experiment was ineffective at lower the BAF of pesticides in the soil. The US EPA Soil Screening Level approach was used with our measured values. Addition of 10% of the aged dairy manure compost reduced the average hazard quotient values to below 1.0 for DDT + DDE and dieldrin. Results indicate this sustainable approach is appropriate to minimize risks to wildlife in areas of marginal organochlorine pesticide contamination. Application of this remediation approach has potential for use internationally in areas where historical pesticide contamination of soils remains a threat to wildlife populations. - Highlights: • Historical applications of organochlorine pesticides are a risk to local ecosystems. • Low cost and sustainable mitigation measures are needed to reduce risks. • Organic matter rich amendments were added to contaminated soil. • Earthworms microcosms were used to measure bioaccumulation factors. • Aged composts were most effective at mitigating risks to ecosystems. - Incorporation of aged dairy manure and biosolids compost amendments is an effective, low cost approach to mitigate risks to terrestrial wildlife from organochlorine pesticides in soils.

Distribution of enzyme activity hotspots induced by earthworms in top- and subsoil

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Hoang, D. T. T.

2016-12-01

Earthworms (Lumbricus terrestris L.) not only affect soil physics, but they also boost microbial activities and consequently create important hotspots of microbial mediated carbon and nutrient turnover through their burrowing activity. However, it is still unknown to which extend earthworms change the enzyme distribution and activity inside their burrows in top- and subsoil horizons. We hypothesized that earthworm burrows, which are enriched in available substrates, have higher percentage of enzyme activity hotspots than soil without earthworms, and that enzyme activities decreased with increasing depth because of the increasing recalcitrance of organic matter in subsoil. We visualized enzyme distribution inside and outside of worm burrows (biopores) by in situ soil zymography and measured enzyme kinetics of 6 enzymes - β-glucosidase (GLU), cellobiohydrolase (CBH), xylanase (XYL), chitinase (NAG), leucine aminopeptidase (LAP) and acid phosphatase (APT) - in pore and bulk soil material up to 105 cm. Zymography showed a heterogeneous distribution of hotspots in worm burrows. The hotspot areas was 2.4 to 14 times larger in the burrows than in soil without earthworms. However, the dispersion index of hotspot distribution showed more aggregated hotspots in soil without earthworms than in soil with earthworms and burrow wall. Enzyme activities decreased with depth, by a factor of 2 to 8 due to fresh C input from the soil surface. Compared to bulk soil, enzyme activities in topsoil biopores were up to 11 times higher for all enzymes, but in the subsoil activities of XYL, NAG and APT were lower in earthworm biopores than bulk soil. In conclusion, hotspots were twice as concentrated close to earthworm burrows as in surrounding soil. Earthworms exerted stronger effects on enzyme activities in biopores in the topsoil than in subsoil. Keywords: Earthworms, hotspots, enzyme activities, enzyme distribution, subsoil

Composition of organic matter in earthworm casts depending on litter quality

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Ellerbrock, R. H.; Gerke, H. H.; Schrader, S.; Leue, M.

2009-04-01

Earthworms contribute to decomposition and stabilization of organic matter (OM) in soil. The digestion during intestinal passage inside worms may lead to a change in the composition of OM. It is largely unknown if and how the type of litter the earthworm is feeding on is affecting the OM composition in the casts. Fourier Transform infrared spectroscopy (FTIR) is used to determine the hydrophobic CH- (A) and the hydrophilic CO- (B) functional groups in OM. The objective was to compare the A/B- ratios of litter samples with that of (i) the corresponding casts of the primary decomposer Lumbricus terrestris and (ii) the water contact angles of ground cast samples and at intact cast surfaces. Litter from 10 different plant species including leaves of birch, beech, oak, spruce, pear, mustard and wheat straw (3 replicates) was offered separately to L. terrestris in microcosms containing a Luvisol soil. The OM composition of litter and that of casts, collected from the soil surface after 4-weeks was analyzed with FTIR (DRIFT technique). The A/B ratio of casts was generally increased as compared to that of the soil. For most litter types, the A/B ratio of cast was relatively similar except for casts from birch (Betula pendula) and pear (Pyrus communis) where the OM show a 3-times higher A/B ratio as compared to wheat (Triticum aestivum) or beech (Fagus sylvatica) casts. The higher A/B ratios seem to be related to the relative higher C/N ratios in the casts from Betula pendula and Pyrus communis feeding experiments. The results indicate that digestion of litter by the worm may change OM composition. The assumption that earthworm casts may enrich hydrophobic OM components could be verified only partly. However particulate and soluble OM fractions in the earthworm casts could have contributed to such differentiation.

Earthworms influenced by reduced tillage, conventional tillage and energy forest in Swedish agricultural field experiments

Energy Technology Data Exchange (ETDEWEB)

Lagerloef, Jan (SLU, Department of Ecology, Swedish University of Agricultural Sciences, Uppsala (Sweden)), Email: Jan.Lagerlof@ekol.slu.se; Paalsson, Olof; Arvidsson, Johan (SLU, Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala (Sweden))

2012-03-15

We compared earthworm density, depth distribution and species composition in three soil cultivation experiments including the treatments ploughless tillage and mouldboard ploughing. Sampling was done in September 2005 and for one experiment also in 1994. By yearly sampling 1995-2005, earthworms in an energy forest of Salix viminalis were compared with those in an adjacent arable field. Sampling method was digging of soil blocks and hand sorting and formalin sampling in one cultivation experiment. Both methods were used in the energy forest and arable land comparison. In two soil cultivation experiments, highest abundances or biomass were found in ploughless tillage. Earthworm density was higher in the upper 10 cm, especially in the ploughless tillage. Earthworm density was significantly higher in the energy forest than in the arable field. Formalin sampling revealed c. 36% of the earthworm numbers found by digging in the energy forest and gave almost no earthworms in the arable field. In all treatments with soil cultivation, species living and feeding in the rhizosphere and soil dominated. One such species, Allolobophora chlorotica, was more abundant under mouldboard ploughing than ploughless tillage. Lumbricus terrestris, browsing on the surface and producing deep vertical burrows, was more common in the ploughless tillage. Species living and feeding close to the soil surface were almost only found in the energy forest, which had not been soil cultivated since 1984. The findings support earlier studies pointing out possibilities to encourage earthworms by reduced soil cultivation. This is one of the first published studies that followed earthworm populations in an energy forest plantation during several years. Explanation of earthworm reactions to management and environmental impacts should be done with consideration of the ecology of species or species groups. Earthworm sampling by formalin must always be interpreted with caution and calibrated by digging and

Earthworms and nutrient availability: the ecosystem engineer as (bio)chemical engineer

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van Groenigen, Jan Willem; Ros, Mart; Vos, Hannah; De Deyn, Gerlinde; Hiemstra, Tjisse; Oenema, Oene; Koopmans, Gerwin

2017-04-01

The ability of earthworms to increase plant production has long been recognized. However, the pathways through which they do so, and the magnitude of this effect, have not been conclusively addressed. In two studies we address these issues for nitrogen (N) and phosphorus (P) availability to plants. In the first study, a meta-analysis, we concluded that earthworm presence increases crop yield on average with 26% and aboveground biomass with 24%. The positive effects of earthworms increase when more residue is returned to the soil, but disappear when soil N availability is high. This suggests that earthworms stimulate plant growth predominantly through N mineralization from soil organic matter or crop residue. In a second study, we tested the effect of earthworms on plant P uptake from inorganic sources. In a greenhouse experiment on a soil with low P availability we showed that presence of the anecic earthworm Lumbricus terrestris resulted in increased aboveground biomass (from 164 to 188 g dry matter m-2) and P uptake (from 0.21 to 0.27 g m-2). Concentrations of total dissolved P and dissolved inorganic P in water extractions of earthworm casts were 7-9 times higher than in those of bulk soil. Using advanced surface complexation modelling, we showed that these effects were primarily related to desorption of inorganic P due to competition with organic carbon for binding sites. We conclude that earthworms can alter nutrient cycling and increase N and P uptake by plants through a combination of biochemical and chemical pathways. Earthworms are most likely to stimulate N uptake in organic farming systems and tropical subsistence farming, which largely rely on nutrient mineralization. Additional benefits of earthworms might be expected in conventional farming systems with low levels of available P.

Conventional tillage decreases the abundance and biomass of earthworms and alters their community structure in a global meta-analysis.

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Briones, María Jesús I; Schmidt, Olaf

2017-10-01

The adoption of less intensive soil cultivation practices is expected to increase earthworm populations and their contributions to ecosystem functioning. However, conflicting results have been reported on the effects of tillage intensity on earthworm populations, attributed in narrative reviews to site-dependent differences in soil properties, climatic conditions and agronomic operations (e.g. fertilization, residue management and chemical crop protection). We present a quantitative review based on a global meta-analysis, using paired observations from 165 publications performed over 65 years (1950-2016) across 40 countries on five continents, to elucidate this long-standing unresolved issue. Results showed that disturbing the soil less (e.g. no-tillage and conservation agriculture [CA]) significantly increased earthworm abundance (mean increase of 137% and 127%, respectively) and biomass (196% and 101%, respectively) compared to when the soil is inverted by conventional ploughing. Earthworm population responses were more pronounced when the soil had been under reduced tillage (RT) for a long time (>10 years), in warm temperate zones with fine-textured soils, and in soils with higher clay contents (>35%) and low pH (earthworm population responses to RT. Additional meta-analyses confirmed that epigeic and, more importantly, the bigger-sized anecic earthworms were the most sensitive ecological groups to conventional tillage. In particular, the deep burrower Lumbricus terrestris exhibited the strongest positive response to RT, increasing in abundance by 124% more than the overall mean of all 13 species analysed individually. The restoration of these two important ecological groups of earthworms and their burrowing, feeding and casting activities under various forms of RT will ensure the provision of ecosystem functions such as soil structure maintenance and nutrient cycling by "nature's plough." © 2017 John Wiley & Sons Ltd.

Petroleum Hydrocarbon Mixture Toxicity and a Trait Based Approach to Soil Invertebrate Species for Site Specific Risk Assessments.

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Gainer, Amy; Cousins, Mark; Hogan, Natacha; Siciliano, Steven D

2018-05-05

Although petroleum hydrocarbons (PHCs) released to the environment typically occur as mixtures, PHC remediation guidelines often reflect individual substance toxicity. It is well documented that groups of aliphatic PHCs act via the same mechanism of action, nonpolar narcosis and, theoretically, concentration addition mixture toxicity principles apply. To assess this theory, ten standardized acute and chronic soil invertebrate toxicity tests on a range of organisms (Eisenia fetida, Lumbricus terrestris, Enchytraeus crypticus, Folsomia candida, Oppia nitens and Hypoaspis aculeifer) were conducted with a refined PHC binary mixture. Reference models for concentration addition and independent action were applied to the mixture toxicity data with consideration of synergism, antagonism and dose level toxicity. Both concentration addition and independent action, without further interactions, provided the best fit with observed response to the mixture. Individual fraction effective concentration values were predicted from optimized, fitted reference models. Concentration addition provided a better estimate than independent action of individual fraction effective concentrations based on comparison with available literature and species trends observed in toxic responses to the mixture. Interspecies differences in standardized laboratory soil invertebrate species responses to PHC contaminated soil was reflected in unique traits. Diets that included soil, large body size, permeable cuticle, low lipid content, lack of ability to molt and no maternal transfer were traits linked to a sensitive survival response to PHC contaminated soil in laboratory tests. Traits linked to sensitive reproduction response in organisms tested were long life spans with small clutch sizes. By deriving single fraction toxicity endpoints considerate of mixtures, we reduce resources and time required in conducting site specific risk assessments for the protection of soil organism's exposure pathway. This

Diet reconstruction and resource partitioning of a Caribbean marine mesopredator using stable isotope bayesian modelling.

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Alexander Tilley

Full Text Available The trophic ecology of epibenthic mesopredators is not well understood in terms of prey partitioning with sympatric elasmobranchs or their effects on prey communities, yet the importance of omnivores in community trophic dynamics is being increasingly realised. This study used stable isotope analysis of (15N and (13C to model diet composition of wild southern stingrays Dasyatis americana and compare trophic niche space to nurse sharks Ginglymostoma cirratum and Caribbean reef sharks Carcharhinus perezi on Glovers Reef Atoll, Belize. Bayesian stable isotope mixing models were used to investigate prey choice as well as viable Diet-Tissue Discrimination Factors for use with stingrays. Stingray δ(15N values showed the greatest variation and a positive relationship with size, with an isotopic niche width approximately twice that of sympatric species. Shark species exhibited comparatively restricted δ(15N values and greater δ(13C variation, with very little overlap of stingray niche space. Mixing models suggest bivalves and annelids are proportionally more important prey in the stingray diet than crustaceans and teleosts at Glovers Reef, in contrast to all but one published diet study using stomach contents from other locations. Incorporating gut contents information from the literature, we suggest diet-tissue discrimination factors values of Δ(15N ≈ 2.7‰ and Δ(13C ≈ 0.9‰ for stingrays in the absence of validation experiments. The wide trophic niche and lower trophic level exhibited by stingrays compared to sympatric sharks supports their putative role as important base stabilisers in benthic systems, with the potential to absorb trophic perturbations through numerous opportunistic prey interactions.

Diet reconstruction and resource partitioning of a Caribbean marine mesopredator using stable isotope bayesian modelling.

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Tilley, Alexander; López-Angarita, Juliana; Turner, John R

2013-01-01

The trophic ecology of epibenthic mesopredators is not well understood in terms of prey partitioning with sympatric elasmobranchs or their effects on prey communities, yet the importance of omnivores in community trophic dynamics is being increasingly realised. This study used stable isotope analysis of (15)N and (13)C to model diet composition of wild southern stingrays Dasyatis americana and compare trophic niche space to nurse sharks Ginglymostoma cirratum and Caribbean reef sharks Carcharhinus perezi on Glovers Reef Atoll, Belize. Bayesian stable isotope mixing models were used to investigate prey choice as well as viable Diet-Tissue Discrimination Factors for use with stingrays. Stingray δ(15)N values showed the greatest variation and a positive relationship with size, with an isotopic niche width approximately twice that of sympatric species. Shark species exhibited comparatively restricted δ(15)N values and greater δ(13)C variation, with very little overlap of stingray niche space. Mixing models suggest bivalves and annelids are proportionally more important prey in the stingray diet than crustaceans and teleosts at Glovers Reef, in contrast to all but one published diet study using stomach contents from other locations. Incorporating gut contents information from the literature, we suggest diet-tissue discrimination factors values of Δ(15)N ≈ 2.7‰ and Δ(13)C ≈ 0.9‰ for stingrays in the absence of validation experiments. The wide trophic niche and lower trophic level exhibited by stingrays compared to sympatric sharks supports their putative role as important base stabilisers in benthic systems, with the potential to absorb trophic perturbations through numerous opportunistic prey interactions.

Starting a DNA barcode reference library for shallow water polychaetes from the southern European Atlantic coast.

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Lobo, Jorge; Teixeira, Marcos A L; Borges, Luisa M S; Ferreira, Maria S G; Hollatz, Claudia; Gomes, Pedro T; Sousa, Ronaldo; Ravara, Ascensão; Costa, Maria H; Costa, Filipe O

2016-01-01

Annelid polychaetes have been seldom the focus of dedicated DNA barcoding studies, despite their ecological relevance and often dominance, particularly in soft-bottom estuarine and coastal marine ecosystems. Here, we report the first assessment of the performance of DNA barcodes in the discrimination of shallow water polychaete species from the southern European Atlantic coast, focusing on specimens collected in estuaries and coastal ecosystems of Portugal. We analysed cytochrome oxidase I DNA barcodes (COI-5P) from 164 specimens, which were assigned to 51 morphospecies. To our data set from Portugal, we added available published sequences selected from the same species, genus or family, to inspect for taxonomic congruence among studies and collection location. The final data set comprised 290 specimens and 79 morphospecies, which generated 99 Barcode Index Numbers (BINs) within Barcode of Life Data Systems (BOLD). Among these, 22 BINs were singletons, 47 other BINs were concordant, confirming the initial identification based on morphological characters, and 30 were discordant, most of which consisted on multiple BINs found for the same morphospecies. Some of the most prominent cases in the latter category include Hediste diversicolor (O.F. Müller, 1776) (7), Eulalia viridis (Linnaeus, 1767) (2) and Owenia fusiformis (delle Chiaje, 1844) (5), all of them reported from Portugal and frequently used in ecological studies as environmental quality indicators. Our results for these species showed discordance between molecular lineages and morphospecies, or added additional relatively divergent lineages. The potential inaccuracies in environmental assessments, where underpinning polychaete species diversity is poorly resolved or clarified, demand additional and extensive investigation of the DNA barcode diversity in this group, in parallel with alpha taxonomy efforts. © 2015 John Wiley & Sons Ltd.

Comparative Effects of Ingested PVC Micro Particles With and Without Adsorbed Benzo(apyrene vs. Spiked Sediments on the Cellular and Sub Cellular Processes of the Benthic Organism Hediste diversicolor

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Alessio Gomiero

2018-04-01

Full Text Available Plastic micro litter represents an emerging contaminant as well as a multiple stress agent in aquatic environments. Microplastics are found even in the remote areas of the world. Together with their occurrence in all environmental compartments, there is a growing concern about their potential to adsorb pollutants co-occurring in the environment. At present, little is known about this source of exposure for aquatic organisms in the benthic environment. Exposure conditions were set up to mimick the contribution of microplastics through different exposure routes. Potential biological effects resulting from these exposures were investigated in the model organism Hediste diversicolor, an annelid worm. Cellular effects including alterations of immunological responses, lysosomal compartment changes, mitochondrial activity, oxyradical production and onset of genotoxicity were assessed in coelomocytes while temporary and permanent effects of oxidative stress were also performed at tissue level. In this study polyvinylchloride (PVC microparticles were shown to adsorb benzo(apyrene with a time and dose-dependent relationship. The elevated bioavailability of the model pollutant after ingestion induced a clear pattern of biological responses. Toxicity mainly targeted impairment of cellular functioning and genotoxicity in H. diversicolor coelomocytes, while permanent effects of oxidative stress were observed at tissue level. Coelomocytes responded fast and with a higher degree of sensitivity to the adverse stimuli. The results showed that microplastic particles in sediments may play a significant role as vectors for organic pollutants. The highest adverse responses were observed in those H. diversicolor exposed to sediments spiked with PVC particles pre-incubated with B[a]P when compared against sediments spiked with B[a]P and plastic microparticles separately.

Diet of the freshwater stingray Potamotrygon motoro (Chondrichthyes: Potamotrygonidae on Marajó Island (Pará, Brazil Dieta da raia de água doce Potamotrygon motoro (Chondrichthyes: Potamotrygonidae na Ilha de Marajó (Pará, Brasil

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MP. Almeida

2010-02-01

Full Text Available The stomach contents of 137 examples of Potamotrygon motoro caught in 3 locations (Muaná, Afuá and Lake Arari on Marajó Island were analysed. The values of the Index of Relative Importance (IRI and its respective percentage (%IRI were calculated. The level of repletion 1 (¼ full was the most representative for both sexes, as well as for immature and mature specimens. Most of the food items found were well-digested. The food items identification indicated the presence of 15 orders, including insects, mollusks, crustaceans, annelids and fish. Differences in diet were observed among the locations studied when comparing %IRI, crustaceans being the most preferred in Afuá, fish in Lake Arari and mollusks in Muaná.O conteúdo estomacal de 137 exemplares de Potamotrygon motoro provenientes de 3 localidades (Muaná, Afuá e Lago Arari na ilha de Marajó foi analisado. Os valores do Índice Relativo de Importância (IRI e respectiva porcentagem (%IRI foram calculados. O nível de repleção 1 (¼ cheio foi o mais representativo para ambos os sexos, assim como para exemplares imaturos e maduros. A maioria dos itens alimentares analisados encontrava-se bastante digerido. A identificação dos itens alimentares indicou a presença de 15 ordens, incluindo insetos, moluscos, crustáceos, anelídeos e peixes. Diferenças na dieta entre os locais amostrados foram observadas ao se comparar as %IRI, sendo crustáceos o item preferencial em Afuá, peixes no Lago Arari e moluscos em Muaná.

Metazoan parasites of fishes from the Celestun coastal lagoon, Yucatan, Mexico.

Science.gov (United States)

Sosa-Medina, Trinidad; Vidal-Martínez, Víctor M; Aguirre-Macedo, M Leopoldina

2015-08-31

The aims of this study were to produce a checklist of the metazoan parasites of fishes from the Celestun coastal lagoon and to determine the degree of faunal similarity among the fishes based on the metazoan parasites they share. A checklist was prepared including all available records (1996-2014) of parasites of marine, brackish water and freshwater fishes of the area. All of these data were included in a presence/absence database and used to determine similarity via Jaccard's index. The results indicate the presence of 62 metazoan parasite species infecting 22 fish species. The number of metazoan parasite species found in the fishes from the Celestún lagoon is apparently the highest reported worldwide for a tropical coastal lagoon. The parasites included 12 species of adult digeneans, 27 digeneans in the metacercarial stage, 6 monogeneans, 3 metacestodes, 9 nematodes, 2 acanthocephalans, 2 crustaceans and 1 annelid. Forty parasite species were autogenic and 23 were allogenic and 1 unknown. The overall similarity among all of the species of fish with respect to the metazoan parasites they share was low (0.08 ± 0.12), with few similarity values above 0.4 being obtained. This low similarity was due primarily to the presence of suites of parasites exclusive to specific species of fish. The autogenic component of the parasite fauna (40 species) dominated the allogenic component (21 species). The most likely explanation for the large number of fish parasites found at Celestún is the good environmental condition of the lagoon, which allows the completion of parasite life cycles and free circulation of euryhaline fishes from the marine environment bringing marine parasites into the lagoon.

Light and vision in the deep-sea benthos: I. Bioluminescence at 500-1000 m depth in the Bahamian islands.

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Johnsen, Sönke; Frank, Tamara M; Haddock, Steven H D; Widder, Edith A; Messing, Charles G

2012-10-01

Bioluminescence is common and well studied in mesopelagic species. However, the extent of bioluminescence in benthic sites of similar depths is far less studied, although the relatively large eyes of benthic fish, crustaceans and cephalopods at bathyal depths suggest the presence of significant biogenic light. Using the Johnson-Sea-Link submersible, we collected numerous species of cnidarians, echinoderms, crustaceans, cephalopods and sponges, as well as one annelid from three sites in the northern Bahamas (500-1000 m depth). Using mechanical and chemical stimulation, we tested the collected species for light emission, and photographed and measured the spectra of the emitted light. In addition, in situ intensified video and still photos were taken of different benthic habitats. Surprisingly, bioluminescence in benthic animals at these sites was far less common than in mesopelagic animals from similar depths, with less than 20% of the collected species emitting light. Bioluminescent taxa comprised two species of anemone (Actinaria), a new genus and species of flabellate Parazoanthidae (formerly Gerardia sp.) (Zoanthidea), three sea pens (Pennatulacea), three bamboo corals (Alcyonacea), the chrysogorgiid coral Chrysogorgia desbonni (Alcyonacea), the caridean shrimp Parapandalus sp. and Heterocarpus ensifer (Decapoda), two holothuroids (Elasipodida and Aspidochirota) and the ophiuroid Ophiochiton ternispinus (Ophiurida). Except for the ophiuroid and the two shrimp, which emitted blue light (peak wavelengths 470 and 455 nm), all the species produced greener light than that measured in most mesopelagic taxa, with the emissions of the pennatulaceans being strongly shifted towards longer wavelengths. In situ observations suggested that bioluminescence associated with these sites was due primarily to light emitted by bioluminescent planktonic species as they struck filter feeders that extended into the water column.

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.

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Wippler, Juliane; Kleiner, Manuel; Lott, Christian; Gruhl, Alexander; Abraham, Paul E; Giannone, Richard J; Young, Jacque C; Hettich, Robert L; Dubilier, Nicole

2016-11-21

The gutless marine worm Olavius algarvensis has a completely reduced digestive and excretory system, and lives in an obligate nutritional symbiosis with bacterial symbionts. While considerable knowledge has been gained of the symbionts, the host has remained largely unstudied. Here, we generated transcriptomes and proteomes of O. algarvensis to better understand how this annelid worm gains nutrition from its symbionts, how it adapted physiologically to a symbiotic lifestyle, and how its innate immune system recognizes and responds to its symbiotic microbiota. Key adaptations to the symbiosis include (i) the expression of gut-specific digestive enzymes despite the absence of a gut, most likely for the digestion of symbionts in the host's epidermal cells; (ii) a modified hemoglobin that may bind hydrogen sulfide produced by two of the worm's symbionts; and (iii) the expression of a very abundant protein for oxygen storage, hemerythrin, that could provide oxygen to the symbionts and the host under anoxic conditions. Additionally, we identified a large repertoire of proteins involved in interactions between the worm's innate immune system and its symbiotic microbiota, such as peptidoglycan recognition proteins, lectins, fibrinogen-related proteins, Toll and scavenger receptors, and antimicrobial proteins. We show how this worm, over the course of evolutionary time, has modified widely-used proteins and changed their expression patterns in adaptation to its symbiotic lifestyle and describe expressed components of the innate immune system in a marine oligochaete. Our results provide further support for the recent realization that animals have evolved within the context of their associations with microbes and that their adaptive responses to symbiotic microbiota have led to biological innovations.

The nervous systems of basally branching nemertea (palaeonemertea.

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Patrick Beckers

Full Text Available In recent years, a lot of studies have been published dealing with the anatomy of the nervous system in different spiralian species. The only nemertean species investigated in this context probably shows derived characters and thus the conditions found there are not useful in inferring the relationship between nemerteans and other spiralian taxa. Ingroup relationships within Nemertea are still unclear, but there is some agreement that the palaeonemerteans form a basal, paraphyletic grade. Thus, palaeonemertean species are likely the most informative when comparing with other invertebrate groups. We therefore analyzed the nervous system of several palaeonemertean species by combining histology and immunostaining. 3D reconstructions based on the aligned slices were performed to get an overall impression of the central nervous system, and immunohistochemistry was chosen to reveal fine structures and to be able to compare the data with recently published results. The insights presented here permit a first attempt to reconstruct the primary organization of the nemertean nervous system. This comparative analysis allows substantiating homology hypotheses for nerves of the peripheral nervous system. This study also provides evidence that the nemertean brain primarily consists of two lobes connected by a strong ventral commissure and one to several dorsal commissures. During nemertean evolution, the brain underwent continuous compartmentalization into a pair of dorsal and ventral lobes interconnected by commissures and lateral tracts. Given that this conclusion can be corroborated by cladistic analyses, nemerteans should share a common ancestor with spiralians that primarily have a simple brain consisting of paired medullary, frontally commissurized and reinforced cords. Such an organization resembles the situation found in presumably basally branching annelids or mollusks.

Megafauna of the UKSRL exploration contract area and eastern Clarion-Clipperton Zone in the Pacific Ocean: Annelida, Arthropoda, Bryozoa, Chordata, Ctenophora, Mollusca.

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Amon, Diva J; Ziegler, Amanda F; Drazen, Jeffrey C; Grischenko, Andrei V; Leitner, Astrid B; Lindsay, Dhugal J; Voight, Janet R; Wicksten, Mary K; Young, Craig M; Smith, Craig R

2017-01-01

There is growing interest in mining polymetallic nodules from the abyssal Clarion-Clipperton Zone (CCZ) in the tropical Pacific Ocean. Despite having been the focus of environmental studies for decades, the benthic megafauna of the CCZ remain poorly known. To predict and manage the environmental impacts of mining in the CCZ, baseline knowledge of the megafauna is essential. The ABYSSLINE Project has conducted benthic biological baseline surveys in the UK Seabed Resources Ltd polymetallic-nodule exploration contract area (UK-1). Prior to ABYSSLINE research cruises in 2013 and 2015, no biological studies had been done in this area of the eastern CCZ. Using a Remotely Operated Vehicle and Autonomous Underwater Vehicle (as well as several other pieces of equipment), the megafauna within the UK Seabed Resources Ltd exploration contract area (UK-1) and at a site ~250 km east of the UK-1 area were surveyed, allowing us to make the first estimates of megafaunal morphospecies richness from the imagery collected. Here, we present an atlas of the abyssal annelid, arthropod, bryozoan, chordate, ctenophore and molluscan megafauna observed and collected during the ABYSSLINE cruises to the UK-1 polymetallic-nodule exploration contract area in the CCZ. There appear to be at least 55 distinct morphospecies (8 Annelida, 12 Arthropoda, 4 Bryozoa, 22 Chordata, 5 Ctenophora, and 4 Mollusca) identified mostly by morphology but also using molecular barcoding for a limited number of animals that were collected. This atlas will aid the synthesis of megafaunal presence/absence data collected by contractors, scientists and other stakeholders undertaking work in the CCZ, ultimately helping to decipher the biogeography of the megafauna in this threatened habitat.

An introduction to loricifera, cycliophora, and micrognathozoa.

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Kristensen, Reinhardt Møbjerg

2002-07-01

Loriciferans, cycliophorans and micrognathozoans are amongst the latest groups of animals to be discovered. Other than all being microscopic, they have very different body plans and are not closely related. Loriciferans were originally assigned to the Aschelminthes. However, both new molecular and ultrastructural researches have shown that Aschelminthes consist of two unrelated groups, Cycloneuralia and Gnathifera. Cycloneuralia may be included in the Ecdysozoa, including all molting invertebrates, and Gnathifera are more closely related to Platyhelminthes. The phylum Loricifera shares many apomorphic characters (e.g., scalids on the introvert) with both Priapulida and Kinorhyncha, and can be included in the taxon Scalidophora, a subgroup of Cycloneuralia. Cycliophora was originally allied to the Entoprocta and Ectoprocta (Bryozoa) based on ultrastructual research. Subsequent molecular data show they may be related to Rotifera and Acanthocephala, within the taxon Gnathifera. The phylogenetic position of Cycliophora is therefore not settled, and more ultrastructural and molecular data are needed. Micrognathozoa is the most recent major group of animals to be described. They show strong affinities with both Rotifera and Gnathostomulida (within the taxon Gnathifera), especially in the fine structure of the pharyngeal apparatus, where the jaw elements have cuticular rods with osmiophilic cores. Furthermore the micrognathozoans have two rows of multiciliated cells that form a locomotory organ, similar to that seen in some gastrotrichs and interstitial annelids. This character is never seen in Rotifera or in the monociliated Gnathostomulida. Rotifera and Acanthocephala always have a syncytial epidermis (Syndermata). Micrognathozoa lack this characteristic feature. Therefore, they are postulated to be placed basally in the Gnathifera, either as a sister-group to Gnathostomulida or as a sister-group to Rotifera + Acanthocephala.

Evolution of pigment-dispersing factor neuropeptides in Panarthropoda: Insights from Onychophora (velvet worms) and Tardigrada (water bears).

Science.gov (United States)

Mayer, Georg; Hering, Lars; Stosch, Juliane M; Stevenson, Paul A; Dircksen, Heinrich

2015-09-01

Pigment-dispersing factor (PDF) denotes a conserved family of homologous neuropeptides present in several invertebrate groups, including mollusks, nematodes, insects, and crustaceans (referred to here as pigment-dispersing hormone [PDH]). With regard to their encoding genes (pdf, pdh), insects possess only one, nematodes two, and decapod crustaceans up to three, but their phylogenetic relationship is unknown. To shed light on the origin and diversification of pdf/pdh homologs in Panarthropoda (Onychophora + Tardigrada + Arthropoda) and other molting animals (Ecdysozoa), we analyzed the transcriptomes of five distantly related onychophorans and a representative tardigrade and searched for putative pdf homologs in publically available genomes of other protostomes. This revealed only one pdf homolog in several mollusk and annelid species; two in Onychophora, Priapulida, and Nematoda; and three in Tardigrada. Phylogenetic analyses suggest that the last common ancestor of Panarthropoda possessed two pdf homologs, one of which was lost in the arthropod or arthropod/tardigrade lineage, followed by subsequent duplications of the remaining homolog in some taxa. Immunolocalization of PDF-like peptides in six onychophoran species, by using a broadly reactive antibody that recognizes PDF/PDH peptides in numerous species, revealed an elaborate system of neurons and fibers in their central and peripheral nervous systems. Large varicose projections in the heart suggest that the PDF neuropeptides functioned as both circulating hormones and locally released transmitters in the last common ancestor of Onychophora and Arthropoda. The lack of PDF-like-immunoreactive somata associated with the onychophoran optic ganglion conforms to the hypothesis that onychophoran eyes are homologous to the arthropod median ocelli. © 2015 Wiley Periodicals, Inc.

Colorful seashells: Identification of haem pathway genes associated with the synthesis of porphyrin shell color in marine snails

KAUST Repository

Williams, Suzanne T.; Lockyer, Anne E.; Dyal, Patricia; Nakano, Tomoyuki; Churchill, Celia K. C.; Speiser, Daniel I.

2017-01-01

Very little is known about the evolution of molluskan shell pigments, although Mollusca is a highly diverse, species rich, and ecologically important group of animals comprised of many brightly colored taxa. The marine snail genus Clanculus was chosen as an exceptional model for studying the evolution of shell color, first, because in Clanculus margaritarius and Clanculus pharaonius both shell and foot share similar colors and patterns; and second, because recent studies have identified the pigments, trochopuniceus (pink-red), and trochoxouthos (yellow-brown), both comprised of uroporphyrin I and uroporphyrin III, in both shell and colored foot tissue of these species. These unusual characteristics provide a rare opportunity to identify the genes involved in color production because, as the same pigments occur in the shell and colored foot tissue, the same color-related genes may be simultaneously expressed in both mantle (which produces the shell) and foot tissue. In this study, the transcriptomes of these two Clanculus species along with a third species, Calliostoma zizyphinum, were sequenced to identify genes associated with the synthesis of porphyrins. Calliostoma zizyphinum was selected as a negative control as trochopuniceus and trochoxouthos were not found to occur in this species. As expected, genes necessary for the production of uroporphyrin I and III were found in all three species, but gene expression levels were consistent with synthesis of uroporphyrins in mantle and colored foot tissue only in Clanculus. These results are relevant not only to understanding the evolution of shell pigmentation in Clanculus but also to understanding the evolution of color in other species with uroporphyrin pigmentation, including (mainly marine) mollusks soft tissues and shells, annelid and platyhelminth worms, and some bird feathers.

Revealing polychaetes invasion patterns: Identification, reproduction and potential risks of the Korean ragworm, Perinereis linea (Treadwell), in the Western Mediterranean

Science.gov (United States)

Arias, Andrés; Richter, Alexandra; Anadón, Nuria; Glasby, Christopher J.

2013-10-01

An established population of the polychaetous annelid Perinereis linea (Treadwell) is reported for the first time outside its native distribution range (NW Pacific). This exotic worm has reached the Western Mediterranean (Mar Menor lagoon) via importing live fishing-bait as it is commonly used by anglers in Mar Menor lagoon, an area largely used for recreational fishing. To avoid confusion with other related species, and because the scientific name has been in synonymy for many years, P. linea is redescribed and illustrated. We focus on the reproductive biology and ecology of P. linea to help to understand its introduction, naturalization and spread along this coastal lagoon. Comparison between the Mediterranean population with a native population from South Korea revealed that the species exhibits a great reproductive plasticity and adaptability, which depends on the environmental conditions. Perinereis linea can reproduce after acquiring the epitokous form or prior to complete epitokal modification. In the Mar Menor lagoon population females release eggs asynchronically without completing epitokal modifications. However, under particular laboratory conditions females produce eggs synchronically and release them after complete epitokal transformations. Fertilization can occur internally in the female coelom, and females release zygotes and larvae through openings in their body walls; they are then incubated in gelatinous masses attached to the female parapodia. The sperm morphology is of the ent-aquasperm type. The eggs and larvae are attacked by symbiotic ciliate protozoa that feed on their yolk reserves. These foreign ciliates may act as carriers of disease in native beachworms and constitute an important risk for the ecosystem health. Finally, we provide recommendations on the prevention of the adverse effects that this exotic ragworm can cause in receiving ecosystems.

A Polychaete's powerful punch: venom gland transcriptomics of Glycera reveals a complex cocktail of toxin homologs.

Science.gov (United States)

von Reumont, Björn M; Campbell, Lahcen I; Richter, Sandy; Hering, Lars; Sykes, Dan; Hetmank, Jörg; Jenner, Ronald A; Bleidorn, Christoph

2014-09-05

Glycerids are marine annelids commonly known as bloodworms. Bloodworms have an eversible proboscis adorned with jaws connected to venom glands. Bloodworms prey on invertebrates, and it is known that the venom glands produce compounds that can induce toxic effects in animals. Yet, none of these putative toxins has been characterized on a molecular basis. Here we present the transcriptomic profiles of the venom glands of three species of bloodworm, Glycera dibranchiata, Glycera fallax and Glycera tridactyla, as well as the body tissue of G. tridactyla. The venom glands express a complex mixture of transcripts coding for putative toxin precursors. These transcripts represent 20 known toxin classes that have been convergently recruited into animal venoms, as well as transcripts potentially coding for Glycera-specific toxins. The toxins represent five functional categories: Pore-forming and membrane-disrupting toxins, neurotoxins, protease inhibitors, other enzymes, and CAP domain toxins. Many of the transcripts coding for putative Glycera toxins belong to classes that have been widely recruited into venoms, but some are homologs of toxins previously only known from the venoms of scorpaeniform fish and monotremes (stonustoxin-like toxin), turrid gastropods (turripeptide-like peptides), and sea anemones (gigantoxin I-like neurotoxin). This complex mixture of toxin homologs suggests that bloodworms employ venom while predating on macroscopic prey, casting doubt on the previously widespread opinion that G. dibranchiata is a detritivore. Our results further show that researchers should be aware that different assembly methods, as well as different methods of homology prediction, can influence the transcriptomic profiling of venom glands. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

De novo transcriptome assembly, functional annotation and differential gene expression analysis of juvenile and adult E. fetida, a model oligochaete used in ecotoxicological studies

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Michelle Thunders

Full Text Available Abstract Background Earthworms are sensitive to toxic chemicals present in the soil and so are useful indicator organisms for soil health. Eisenia fetida are commonly used in ecotoxicological studies; therefore the assembly of a baseline transcriptome is important for subsequent analyses exploring the impact of toxin exposure on genome wide gene expression. Results This paper reports on the de novo transcriptome assembly of E. fetida using Trinity, a freely available software tool. Trinotate was used to carry out functional annotation of the Trinity generated transcriptome file and the transdecoder generated peptide sequence file along with BLASTX, BLASTP and HMMER searches and were loaded into a Sqlite3 database. To identify differentially expressed transcripts; each of the original sequence files were aligned to the de novo assembled transcriptome using Bowtie and then RSEM was used to estimate expression values based on the alignment. EdgeR was used to calculate differential expression between the two conditions, with an FDR corrected P value cut off of 0.001, this returned six significantly differentially expressed genes. Initial BLASTX hits of these putative genes included hits with annelid ferritin and lysozyme proteins, as well as fungal NADH cytochrome b5 reductase and senescence associated proteins. At a cut off of P = 0.01 there were a further 26 differentially expressed genes. Conclusion These data have been made publicly available, and to our knowledge represent the most comprehensive available transcriptome for E. fetida assembled from RNA sequencing data. This provides important groundwork for subsequent ecotoxicogenomic studies exploring the impact of the environment on global gene expression in E. fetida and other earthworm species.

Distribution and behaviour of transuranic elements in the physical and biological compartments of the Channel French shore

International Nuclear Information System (INIS)

Germain, P.; Miramand, P.; Camus, H.; Grenaut, C.

1983-09-01

Biological samples (algae, suspension-feeder mollusks living in contact with sediments, annelids), sediments and sea water were taken at 5 stations along the Channel shore from 1978 to 1981 in order to determine 239 + 240 Pu, 238 Pu, 241 Am and 244 Cm levels. In Northern Cotentin, radioactivity levels for 239 + 240 Pu, 238 Pu and 241 Am, were respectively about 1-10, 0.5-7 and 1-19 pCi kg -1 fresh weight in biological samples; 24-90, 11-28 and 24-31 pCi kg -1 dry weight in sediments; 1-7, 5-40 and 2-15 fCi l -1 in sea water. For stations far from the La Hague outlet (Seine river and Mont Saint-Michel bays) levels for 239 + 240 Pu, 238 Pu and 241 Am were respectively about 0.3-5, 0.1-2 and 0.2-3 pCi kg -1 fresh weight in biological samples; 30-80, 5-26 and 14-40 pCi kg -1 dry weight in sediments and 1-3, 3-4 and 3-8 fCi l -1 in sea water. Labelling of industrial wastes was demonstrated by the values of the 238 Pu/ 239 + 240 Pu ratios. The evolution of plutonium isotopes in sea water and in the other environmental compartments and the bioavailability of americium are discussed. Sediment-animal transfers are quantified and their processes specified. An assessment of plutonium and americium hazards from ingestion of mollusks shows that the ingested activity represents 1.1 10 -4 only of the ALI (ingestion) recommended by ICRP for members of the public [fr

Colorful seashells: Identification of haem pathway genes associated with the synthesis of porphyrin shell color in marine snails

KAUST Repository

Williams, Suzanne T.

2017-10-30

Very little is known about the evolution of molluskan shell pigments, although Mollusca is a highly diverse, species rich, and ecologically important group of animals comprised of many brightly colored taxa. The marine snail genus Clanculus was chosen as an exceptional model for studying the evolution of shell color, first, because in Clanculus margaritarius and Clanculus pharaonius both shell and foot share similar colors and patterns; and second, because recent studies have identified the pigments, trochopuniceus (pink-red), and trochoxouthos (yellow-brown), both comprised of uroporphyrin I and uroporphyrin III, in both shell and colored foot tissue of these species. These unusual characteristics provide a rare opportunity to identify the genes involved in color production because, as the same pigments occur in the shell and colored foot tissue, the same color-related genes may be simultaneously expressed in both mantle (which produces the shell) and foot tissue. In this study, the transcriptomes of these two Clanculus species along with a third species, Calliostoma zizyphinum, were sequenced to identify genes associated with the synthesis of porphyrins. Calliostoma zizyphinum was selected as a negative control as trochopuniceus and trochoxouthos were not found to occur in this species. As expected, genes necessary for the production of uroporphyrin I and III were found in all three species, but gene expression levels were consistent with synthesis of uroporphyrins in mantle and colored foot tissue only in Clanculus. These results are relevant not only to understanding the evolution of shell pigmentation in Clanculus but also to understanding the evolution of color in other species with uroporphyrin pigmentation, including (mainly marine) mollusks soft tissues and shells, annelid and platyhelminth worms, and some bird feathers.

Importance of seagrass-mangrove continuum as feeding grounds for juvenile pink ear emperor Lethrinus lentjan in Setiu Lagoon, Malaysia: Stable isotope approach

Science.gov (United States)

Le, Dung Quang; Tanaka, Kentaro; Hii, Yii Siang; Sano, Yuji; Nanjo, Kusuto; Shirai, Kotaro

2018-05-01

The commercially important pink ear emperor fish, Lethrinus lentjan, often occurs as a juvenile in subtropical and tropical interlinked mangrove and seagrass ecosystems, but little is known about its feeding habits and habitat use. Here, we used gut contents and stable isotopic (δ13C and δ15N) ratios to determine temporal changes in food sources and foraging habits of juvenile and sub-adult fish collected in mangrove forests and seagrass beds in the Setiu Lagoon. Gut content examination identified the main food sources as crustaceans, gastropods, bivalves, and annelids. Stable isotope analysis of food sources showed marked differences between the mangroves (δ13C = -26.8 ± 2.0‰; δ15N = 4.3 ± 1.7‰) and the seagrasses (mean ± S.D. δ13C = -20.5 ± 5.5‰; δ15N = 5.8 ± 1.2‰). The isotopic composition of L. lentjan revealed that it mainly utilized seagrass-based food sources. Rainfall and the semi-diurnal tidal regimes may affect the foraging habitats of fish in the lagoon. A significant depletion of 13C related to body size was observed, suggesting that mangroves provided some benefits to sub-adult fish. In contrast, trophic position increased with fish growth, although this increase was negligible. A stable isotope mixing model confirmed that the seagrass bed constituted the main carbon source for the fish, but with an increasing contribution of mangrove prey, such as sesarmid crabs, related to fish growth. This study provided novel information on seasonal variations in feeding areas and flexible habitat use in L. lentjan in the Setiu Lagoon, which will help optimize management strategies for sustainable use and wildlife conservation.

Benthic Community Structure and Sediment Geochemical Properties at Hydrocarbon Seeps Along the Continental Slope of the Western North Atlantic

Science.gov (United States)

Demopoulos, A. W.; Bourque, J. R.; Brooke, S.

2015-12-01

Hydrocarbon seeps support distinct benthic communities capable of utilizing reduced chemical compounds for nutrition. In recent years, methane seepage has been increasingly documented along the continental slope of the U.S. Atlantic margin. In 2012 and 2013, two seeps were investigated in this region: a shallow site near Baltimore Canyon (410-450 m) and a deep site near Norfolk Canyon (1600 m). Both sites contain extensive mussel beds and microbial mats. Sediment cores and grab samples were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 mm) in relationship to the associated sediment environment (organic carbon and nitrogen, stable isotopes 13C and 15N, grain size, and depth) of mussel beds, mats, and slope habitats. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments. Macrofaunal communities were distinctly different both between depths and among habitat types. Specifically, microbial mat sediments were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in Baltimore microbial mat habitats, but higher in mussel and slope sediments compared to Norfolk seep habitats found at deeper depths. Multivariate statistical analysis identified sediment carbon:nitrogen (C:N) ratios and 13C values as important variables for structuring the macrofaunal communities. Higher C:N ratios were present within microbial mat habitats and depleted 13C values occurred in sediments adjacent to mussel beds found in Norfolk Canyon seeps. Differences in the quality and source of organic matter present in the seep habitats are known to be important drivers in macrofaunal community structure and associated food webs. The multivariate analysis provides new insight into the relative importance of the seep sediment quality in supporting dense macrofaunal communities compared

Ethnozoological study of animals based medicine used by traditional healers and indigenous inhabitants in the adjoining areas of Gibbon Wildlife Sanctuary, Assam, India.

Science.gov (United States)

Borah, Manash Pratim; Prasad, Surya Bali

2017-06-30

India has an immense faunal, floral, as well as cultural diversity with many ethnic communities who are primarily dependent on the traditional medicinal system for their primary health care. Documentation and evaluation of this indigenous remedial knowledge may be helpful to establish new drugs for human health. The present study is intended to look into different zootherapeutic medicinal uses in the traditional health care system among the native inhabitants adjacent to the Gibbon Wildlife Sanctuary, Assam, India. Field survey was carried out from March 2015 to August 2015 by personal interviews through semi-structured questionnaires. In some cases where participants were uncomfortable with the questionnaires, informal interviews and open group discussions were conducted with a total of 62 indigenous respondents (43 male and 19 female) who provided the information regarding various medicinal uses of animals and their products (local name of animal, mode of preparation, application etc). The study recorded a total of 44 different species, 44 genera and 36 families of animals which are used for the treatment of 40 different ailments. Insects occupied the highest uses (30.9%), followed by mammals (23.8%), fishes (16.7%), reptiles (11.9%), amphibians (7.1%), annelids (4.8%) and gastropods (4.8%). Further, some zootherapeutic animals i.e. cockroach (Periplaneta americana), praying mantis (Mantis religiosa) and earthworms (Metaphire houletti, Pheretima posthum) are used for the treatment of asthma, otorrhoea and cancer respectively. The findings suggest that the traditional zootherapeutic remedial measures followed by the native people adjacent to Gibbon Wildlife Sanctuary plays an important role in their primary health care. The documentation of this indigenous knowledge on animal based medicines should be very helpful in the formulation of strategies for sustainable management and conservation of bio-resources as well as providing potential for the novel drugs

Biodiversity of Macrofauna Associated with Sponges across Ecological Gradients in the Central Red Sea

KAUST Repository

Kandler, Nora

2015-12-01

Between 33 and 91 percent of marine species are currently undescribed, with the majority occurring in tropical and offshore environments. Sponges act as important microhabitats and promote biodiversity by harboring a wide variety of macrofauna and microbiota, but little is known about the relationships between the sponges and their symbionts. This study uses DNA barcoding to examine the macrofaunal communities associated with sponges of the central Saudi Arabian Red Sea, a drastically understudied ecosystem with high biodiversity and endemism. In total, 185 epifaunal and infaunal operational taxonomic units (OTUs) were distinguished from the 1399 successfully-sequenced macrofauna individuals from 129 sponges representing seven sponge species, one of which (Stylissa carteri) was intensively studied. A significant difference was found in the macrofaunal community composition of Stylissa carteri along a cross-shelf gradient using relative OTU abundance (Bray-Curtis diversity index). The abundance of S. carteri also follows a cross-shelf gradient, increasing with proximity to shore. The difference in macrofaunal communities of several species of sponges at one location was found to be significant as well, using OTU presence (binary Jaccard diversity index). Four of the seven sponge species collected were dominated by a single annelid OTU, each unique to one sponge species. A fifth was dominated by four arthropod OTUs, all species-specific as well. Region-based diversity differences may be attributed to environmental factors such as reef morphology, water flow, and sedimentation, whereas species-based differences may be caused by sponge morphology, microbial abundances, and chemical defenses. As climate change and ocean acidification continue to modify coral reef ecosystems, understanding the ecology of sponges and their role as microhabitats may become more important. This thesis also includes a supplemental document in the form of a spreadsheet showing the number of

No adverse effect of genetically modified antifungal wheat on decomposition dynamics and the soil fauna community--a field study.

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Caroline Duc

Full Text Available The cultivation of genetically modified (GM plants has raised several environmental concerns. One of these concerns regards non-target soil fauna organisms, which play an important role in the decomposition of organic matter and hence are largely exposed to GM plant residues. Soil fauna may be directly affected by transgene products or indirectly by pleiotropic effects such as a modified plant metabolism. Thus, ecosystem services and functioning might be affected negatively. In a litterbag experiment in the field we analysed the decomposition process and the soil fauna community involved. Therefore, we used four experimental GM wheat varieties, two with a race-specific antifungal resistance against powdery mildew (Pm3b and two with an unspecific antifungal resistance based on the expression of chitinase and glucanase. We compared them with two non-GM isolines and six conventional cereal varieties. To elucidate the mechanisms that cause differences in plant decomposition, structural plant components (i.e. C∶N ratio, lignin, cellulose, hemicellulose were examined and soil properties, temperature and precipitation were monitored. The most frequent taxa extracted from decaying plant material were mites (Cryptostigmata, Gamasina and Uropodina, springtails (Isotomidae, annelids (Enchytraeidae and Diptera (Cecidomyiidae larvae. Despite a single significant transgenic/month interaction for Cecidomyiidae larvae, which is probably random, we detected no impact of the GM wheat on the soil fauna community. However, soil fauna differences among conventional cereal varieties were more pronounced than between GM and non-GM wheat. While leaf residue decomposition in GM and non-GM wheat was similar, differences among conventional cereals were evident. Furthermore, sampling date and location were found to greatly influence soil fauna community and decomposition processes. The results give no indication of ecologically relevant adverse effects of antifungal GM

No adverse effect of genetically modified antifungal wheat on decomposition dynamics and the soil fauna community--a field study.

Science.gov (United States)

Duc, Caroline; Nentwig, Wolfgang; Lindfeld, Andreas

2011-01-01

The cultivation of genetically modified (GM) plants has raised several environmental concerns. One of these concerns regards non-target soil fauna organisms, which play an important role in the decomposition of organic matter and hence are largely exposed to GM plant residues. Soil fauna may be directly affected by transgene products or indirectly by pleiotropic effects such as a modified plant metabolism. Thus, ecosystem services and functioning might be affected negatively. In a litterbag experiment in the field we analysed the decomposition process and the soil fauna community involved. Therefore, we used four experimental GM wheat varieties, two with a race-specific antifungal resistance against powdery mildew (Pm3b) and two with an unspecific antifungal resistance based on the expression of chitinase and glucanase. We compared them with two non-GM isolines and six conventional cereal varieties. To elucidate the mechanisms that cause differences in plant decomposition, structural plant components (i.e. C∶N ratio, lignin, cellulose, hemicellulose) were examined and soil properties, temperature and precipitation were monitored. The most frequent taxa extracted from decaying plant material were mites (Cryptostigmata, Gamasina and Uropodina), springtails (Isotomidae), annelids (Enchytraeidae) and Diptera (Cecidomyiidae larvae). Despite a single significant transgenic/month interaction for Cecidomyiidae larvae, which is probably random, we detected no impact of the GM wheat on the soil fauna community. However, soil fauna differences among conventional cereal varieties were more pronounced than between GM and non-GM wheat. While leaf residue decomposition in GM and non-GM wheat was similar, differences among conventional cereals were evident. Furthermore, sampling date and location were found to greatly influence soil fauna community and decomposition processes. The results give no indication of ecologically relevant adverse effects of antifungal GM wheat on the

No Adverse Effect of Genetically Modified Antifungal Wheat on Decomposition Dynamics and the Soil Fauna Community – A Field Study

Science.gov (United States)

Duc, Caroline; Nentwig, Wolfgang; Lindfeld, Andreas

2011-01-01

The cultivation of genetically modified (GM) plants has raised several environmental concerns. One of these concerns regards non-target soil fauna organisms, which play an important role in the decomposition of organic matter and hence are largely exposed to GM plant residues. Soil fauna may be directly affected by transgene products or indirectly by pleiotropic effects such as a modified plant metabolism. Thus, ecosystem services and functioning might be affected negatively. In a litterbag experiment in the field we analysed the decomposition process and the soil fauna community involved. Therefore, we used four experimental GM wheat varieties, two with a race-specific antifungal resistance against powdery mildew (Pm3b) and two with an unspecific antifungal resistance based on the expression of chitinase and glucanase. We compared them with two non-GM isolines and six conventional cereal varieties. To elucidate the mechanisms that cause differences in plant decomposition, structural plant components (i.e. C∶N ratio, lignin, cellulose, hemicellulose) were examined and soil properties, temperature and precipitation were monitored. The most frequent taxa extracted from decaying plant material were mites (Cryptostigmata, Gamasina and Uropodina), springtails (Isotomidae), annelids (Enchytraeidae) and Diptera (Cecidomyiidae larvae). Despite a single significant transgenic/month interaction for Cecidomyiidae larvae, which is probably random, we detected no impact of the GM wheat on the soil fauna community. However, soil fauna differences among conventional cereal varieties were more pronounced than between GM and non-GM wheat. While leaf residue decomposition in GM and non-GM wheat was similar, differences among conventional cereals were evident. Furthermore, sampling date and location were found to greatly influence soil fauna community and decomposition processes. The results give no indication of ecologically relevant adverse effects of antifungal GM wheat on the

On the Temperature Behavior of Pulse Propagation and Relaxation in Worms, Nerves and Gels.

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Christian Fillafer

Full Text Available The effect of temperature on pulse propagation in biological systems has been an important field of research. Environmental temperature not only affects a host of physiological processes e.g. in poikilotherms but also provides an experimental means to investigate the thermodynamic phenomenology of nerves and muscle. In the present work, the temperature dependence of blood vessel pulsation velocity and frequency was studied in the annelid Lumbriculus variegatus. The pulse velocity was found to vary linearily between 0°C and 30°C. In contrast, the pulse frequency increased non-linearly in the same temperature range. A heat block ultimately resulted in complete cessation of vessel pulsations at 37.2±2.7°C (lowest: 33°C, highest: 43°C. However, quick cooling of the animal led to restoration of regularly propagating pulses. This experimentally observed phenomenology of pulse propagation and frequency is interpreted without any assumptions about molecules in the excitable membrane (e.g. ion channels or their temperature-dependent behaviour. By following Einstein's approach to thermodynamics and diffusion, a relation between relaxation time τ and compressibility κ of the excitable medium is derived that can be tested experimentally (for κT ∼ κS. Without fitting parameters this theory predicts the temperature dependence of the limiting (i.e. highest pulse frequency in good agreement with experimental data. The thermodynamic approach presented herein is neither limited to temperature nor to worms nor to living systems. It describes the coupling between pulse propagation and relaxation equally well in nerves and gels. The inherent consistency and universality of the concept underline its potential to explain the dependence of pulse propagation and relaxation on any thermodynamic observable.

A new species of Temnocephala (Platyhelminthes) with an unusual pharynx, including an amendment of the diagnosis of the genus.

Science.gov (United States)

De leÓn, Rodrigo Ponce; Volonterio, Odile

2018-02-08

Three species of Temnocephala have been reported on Aegla from Uruguay: Temnocephala axenos, Temnocephala mertoni and Temnocephala talicei. As part of a systematic review of the Uruguayan species of Temnocephala, a fourth species was found on Aegla platensis and Aegla uruguayana. This species, new for the genus, has the following diagnostic characters: Large temnocephalan; slightly curved penial stylet (225 µm in length) with a symmetrical introvert (27 long by 18 µm in diameter) that has at least 44 spine-like projections, each bearing 7 rows of internal spines; a seminal vesicle that opens sub-polarly into the contractile vesicle; a muscular vagina with a strong asymmetrical sphincter; preequatorial nephridiopores close to the internal borders of the elongate-oval excretory syncytia; a large pharynx with anterior and posterior sphincters of about the same diameter and a narrow pharyngeal lumen with nearly uniform width. To contemplate the characters of the pharynx, an amendment of the genus Temnocephala is given. The new species resembles Temnocephala cyanoglandula, which also has a very long, slightly curved penial stylet, but differs from it by having a shorter penial stylet, a lower number of rows of spines in the introvert, a larger, different type of pharynx, a smaller contractile vesicle and a larger sucker. The new species is carnivorous and feeds on whole preys, which are mainly annelids (Stratiodrilus) and other species of Temnocephala. The new species was found to be hyperparasitised by plerocercoid and nematode larvae, but hyperparasites were not found in the other sympatric species of Temnocephala. Based on the findings presented here, it is clear that detailed histological descriptions of the pharynx should be contemplated as part of the normal work in taxonomy of temnocephalans.

Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining.

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Etienne G J Danchin

2013-10-01

Full Text Available Root-knot nematodes are globally the most aggressive and damaging plant-parasitic nematodes. Chemical nematicides have so far constituted the most efficient control measures against these agricultural pests. Because of their toxicity for the environment and danger for human health, these nematicides have now been banned from use. Consequently, new and more specific control means, safe for the environment and human health, are urgently needed to avoid worldwide proliferation of these devastating plant-parasites. Mining the genomes of root-knot nematodes through an evolutionary and comparative genomics approach, we identified and analyzed 15,952 nematode genes conserved in genomes of plant-damaging species but absent from non target genomes of chordates, plants, annelids, insect pollinators and mollusks. Functional annotation of the corresponding proteins revealed a relative abundance of putative transcription factors in this parasite-specific set compared to whole proteomes of root-knot nematodes. This may point to important and specific regulators of genes involved in parasitism. Because these nematodes are known to secrete effector proteins in planta, essential for parasitism, we searched and identified 993 such effector-like proteins absent from non-target species. Aiming at identifying novel targets for the development of future control methods, we biologically tested the effect of inactivation of the corresponding genes through RNA interference. A total of 15 novel effector-like proteins and one putative transcription factor compatible with the design of siRNAs were present as non-redundant genes and had transcriptional support in the model root-knot nematode Meloidogyne incognita. Infestation assays with siRNA-treated M. incognita on tomato plants showed significant and reproducible reduction of the infestation for 12 of the 16 tested genes compared to control nematodes. These 12 novel genes, showing efficient reduction of parasitism when

Effects of a constructed Technosol on mortality, survival and reproduction of earthworms

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Pey, Benjamin; Cortet, Jerome; Capowiez, Yvan; Mignot, Lenaic; Nahmani, Johanne; Watteau, Francoise; Schwartz, Christophe

2010-05-01

Soils, whose properties and pedogenesis are dominated by artificial materials or transported materials, are classified as Technosols. Some of these Technosols are used in soil engineering, which is the voluntary action to combine technical materials in a given objective to restore an ecosystem. Primary by products that are used to build these Technosols need to be assessed on an ecotoxicological point of view. The following study aims to assess the effects of a constructed Technosol made from different primary by-products on the mortality, survival and reproductions of two earthworm species. The model of Technosol used here is a combination of green-waste compost (GWC) and papermill sludge (PS) mixed with thermally treated industrial soil (TIS). OECD soil is used as a control soil. Three different experiments have been managed: i) the first, to assess the potential toxicity effect on Eisenia foetida biomass (28 days) and reproduction (56 days), ii) the second to assess the short-term effect (7 days) on Lumbricus terrestris biomass, iii) and the third to assess the medium-term effect (30 days) on L. terrestris biomass. Reproduction of E. foetida is enhanced with high proportions of GWC. For biomass, GWC seems to improve body mass contrary to other materials which lead to losses of body mass. Thus, for E. foetida, GWC seems to be a high-quality and long-term source of food. Body mass of L. terrestris decreased with GWC and OECD. At short-term only, TIS/PS leads to a gain of body mass. Only equilibrium of 25% GWC - 75% TIS/PS allows a gain of body mass at medium term. TIS/PS appears to be a low-quality and short-term food resource but an excellent water tank. It can be concluded that the constructed Technosol is not toxic for fauna but some differences appear between different tested material combinations, depending on nature, proportion and trophic properties of materials.

Kinetics and spatial distribution of enzymes of carbon, nitrogen and phosphorus cycles in earthworm biopores

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Hoang Thi Thu, Duyen; Razavi, Bahar S.

2016-04-01

Earthworms boost microbial activities and consequently form hotspots in soil. The distribution of enzyme activities inside the earthworm biopores is completely unknown. For the first time, we analyzed enzyme kinetics and visualized enzyme distribution inside and outside biopores by in situ soil zymography. Kinetic parameters (Vmax and Km) of 6 enzymes β-glucosidase (GLU), cellobiohydrolase (CBH), xylanase (XYL), chitinase (NAG), leucine aminopeptidase (LAP) and acid phosphatase (APT) were determined in biopores formed by Lumbricus terrestris L.. The spatial distributions of GLU, NAG and APT become visible via zymograms in comparison between earthworm-inhabited and earthworm-free soil. Zymography showed heterogeneous distribution of hotspots in the rhizosphere and biopores. The hotspot areas were 2.4 to 14 times larger in the biopores than in soil without earthworms. The significantly higher Vmax values for GLU, CBH, XYL, NAG and APT in biopores confirmed the stimulation of enzyme activities by earthworms. For CBH, XYL and NAG, the 2- to 3-fold higher Km values in biopores indicated different enzyme systems with lower substrate affinity compared to control soil. The positive effects of earthworms on Vmax were cancelled by the Km increase for CBH, XYL and NAG at a substrate concentration below 20 μmol g-1 soil. The change of enzyme systems reflected a shift in dominant microbial populations toward species with lower affinity to holo-celluloses and to N-acetylglucosamine, and with higher affinity to proteins as compared to the biopores-free soil. We conclude that earthworm biopores are microbial hotspots with much higher and dense distribution of enzyme activities compared to bulk soil. References Spohn M, Kuzyakov Y. (2014) Spatial and temporal dynamics of hotspots of enzyme activity in soil as affected by living and dead roots - a soil zymography analysis, Plant Soil 379: 67-77. Blagodatskaya, E., Kuzyakov, Y., 2013. Review paper: Active microorganisms in soil

Visualization of enzyme activities inside earthworm biopores by in situ soil zymography

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Thu Duyen Hoang, Thi; Razavi, Bahar. S.; Blagodatskaya, Evgenia; Kuzyakov, Yakov

2015-04-01

Earthworms can strongly activate microorganisms, increase microbial and enzyme activities and consequently the turnover of native soil organic matter. In extremely dynamic microhabitats and hotspots as biopores made by earthworms, the in situ enzyme activities are a footprint of complex biotic interactions. The effect of earthworms on the alteration of enzyme activities inside biopores and the difference between bio-pores and earthworm-free soil was visualized by in situ soil zymography (Spohn and Kuzyakov, 2014). For the first time, we prepared quantitative imaging of enzyme activities in biopores. Furthermore, we developed the zymography technique by direct application of a substrate saturated membrane to the soil to obtain better spatial resolution. Lumbricus terrestris L. was placed into transparent box (15×20×15cm). Simultaneously, maize seed was sown in the soil. Control soil box with maize and without earthworm was prepared in the same way. After two weeks when bio-pore systems were formed by earthworm, we visualized in situ enzyme activities of five hydrolytic enzymes (β-glucosidase, cellobiohydrolase, chitinase, xylanase, leucine aminopeptidase) and phosphatase. Followed by non-destructive zymography, biopore samples and control soil were destructively collected to assay enzyme kinetics by fluorogenically labeled substrates method. Zymography showed higher activity of β-glucosidase, chitinase, xylanase and phosphatase in biopores comparing to bulk soil. These differences were further confirmed by fluorimetric microplate enzyme assay detected significant difference of Vmax in four above mentioned enzymes. Vmax of β-glucosidase, chitinase, xylanase and phosphatase in biopores is 68%, 108%, 50% and 49% higher than that of control soil. However, no difference in cellobiohydrolase and leucine aminopeptidase kinetics between biopores and control soil were detected. This indicated little effect of earthworms on protein and cellulose transformation in soil

Tillage and crop residue management methods had minor effects on the stock and stabilization of topsoil carbon in a 30-year field experiment.

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Singh, Pooja; Heikkinen, Jaakko; Ketoja, Elise; Nuutinen, Visa; Palojärvi, Ansa; Sheehy, Jatta; Esala, Martti; Mitra, Sudip; Alakukku, Laura; Regina, Kristiina

2015-06-15

We studied the effects of tillage and straw management on soil aggregation and soil carbon sequestration in a 30-year split-plot experiment on clay soil in southern Finland. The experimental plots were under conventional or reduced tillage with straw retained, removed or burnt. Wet sieving was done to study organic carbon and soil composition divided in four fractions: 1) large macroaggregates, 2) small macroaggregates, 3) microaggregates and 4) silt and clay. To further estimate the stability of carbon in the soil, coarse particulate organic matter, microaggregates and silt and clay were isolated from the macroaggregates. Total carbon stock in the topsoil (equivalent to 200 kg m(-2)) was slightly lower under reduced tillage (5.0 kg m(-2)) than under conventional tillage (5.2 kg m(-2)). Reduced tillage changed the soil composition by increasing the percentage of macroaggregates and decreasing the percentage of microaggregates. There was no evidence of differences in the composition of the macroaggregates or carbon content in the macroaggregate-occluded fractions. However, due to the higher total amount of macroaggregates in the soil, more carbon was bound to the macroaggregate-occluded microaggregates in reduced tillage. Compared with plowed soil, the density of deep burrowing earthworms (Lumbricus terrestris) was considerably higher under reduced tillage and positively associated with the percentage of large macroaggregates. The total amount of microbial biomass carbon did not differ between the treatments. Straw management did not have discernible effects either on soil aggregation or soil carbon stock. We conclude that although reduced tillage can improve clay soil structure, generally the chances to increase topsoil carbon sequestration by reduced tillage or straw management practices appear limited in cereal monoculture systems of the boreal region. This may be related to the already high C content of soils, the precipitation level favoring decomposition and

The Ovary of Tubifex tubifex (Clitellata, Naididae, Tubificinae Is Composed of One, Huge Germ-Line Cyst that Is Enriched with Cytoskeletal Components.

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Anna Z Urbisz

Full Text Available Recent studies on the ovary organization and oogenesis in Tubificinae have revealed that their ovaries are small polarized structures that are composed of germ cells in subsequent stages of oogenesis that are associated with somatic cells. In syncytial cysts, as a rule, each germ cell is connected to the central cytoplasmic mass, the cytophore, via only one stable intercellular bridge (ring canal. In this paper we present detailed data about the composition of germ-line cysts in Tubifex tubifex with special emphasis on the occurrence and distribution of the cytoskeletal elements. Using fixed material and live cell imaging techniques, we found that the entire ovary of T. tubifex is composed of only one, huge multicellular germ-line cyst, which may contain up to 2,600 cells. Its architecture is broadly similar to the cysts that are found in other clitellate annelids, i.e. a common, anuclear cytoplasmic mass in the center of the cyst and germ cells that are connected to it via intercellular bridges. The cytophore in the T. tubifex cyst extends along the long axis of the ovary in the form of elongated and branched cytoplasmic strands. Rhodamine-coupled phalloidin staining revealed that the prominent strands of actin filaments occur inside the cytophore. Similar to the cytophore, F-actin strands are branched and they are especially well developed in the middle and outermost parts of the ovary. Microfilaments are also present in the ring canals that connect the germ cells with the cytophore in the narrow end of the ovary. Using TubulinTracker, we found that the microtubules form a prominent network of loosely and evenly distributed tubules inside the cytophore as well as in every germ cell. The well-developed cytoskeletal elements in T. tubifex ovary seem to ensure the integrity of such a huge germ-line cyst of complex (germ cells-ring canals-cytophore organization. A comparison between the cysts that are described here and other well-known female

Molecular cloning and characterization of taurocyamine kinase from Clonorchis sinensis: a candidate chemotherapeutic target.

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Jing-Ying Xiao

2013-11-01

Full Text Available BACKGROUND: Adult Clonorchis sinensis lives in the bile duct and causes endemic clonorchiasis in East Asian countries. Phosphagen kinases (PK constitute a highly conserved family of enzymes, which play a role in ATP buffering in cells, and are potential targets for chemotherapeutic agents, since variants of PK are found only in invertebrate animals, including helminthic parasites. This work is conducted to characterize a PK from C. sinensis and to address further investigation for future drug development. METHODOLOGY/PRINCIPAL FINDINGS: [corrected] A cDNA clone encoding a putative polypeptide of 717 amino acids was retrieved from a C. sinensis transcriptome. This polypeptide was homologous to taurocyamine kinase (TK of the invertebrate animals and consisted of two contiguous domains. C. sinensis TK (CsTK gene was reported and found consist of 13 exons intercalated with 12 introns. This suggested an evolutionary pathway originating from an arginine kinase gene group, and distinguished annelid TK from the general CK phylogenetic group. CsTK was found not to have a homologous counterpart in sequences analysis of its mammalian hosts from public databases. Individual domains of CsTK, as well as the whole two-domain enzyme, showed enzymatic activity and specificity toward taurocyamine substrate. Of the CsTK residues, R58, I60 and Y84 of domain 1, and H60, I63 and Y87 of domain 2 were found to participate in binding taurocyamine. CsTK expression was distributed in locomotive and reproductive organs of adult C. sinensis. Developmentally, CsTK was stably expressed in both the adult and metacercariae stages. Recombinant CsTK protein was found to have low sensitivity and specificity toward C. sinensis and platyhelminth-infected human sera on ELISA. CONCLUSION: CsTK is a promising anti-C. sinensis drug target since the enzyme is found only in the C. sinensis and has a substrate specificity for taurocyamine, which is different from its mammalian counterpart

Effects of natural and human-induced hypoxia on coastal benthos

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Levin, L. A.; Ekau, W.; Gooday, A. J.; Jorissen, F.; Middelburg, J. J.; Naqvi, S. W. A.; Neira, C.; Rabalais, N. N.; Zhang, J.

2009-10-01

Coastal hypoxia (defined here as branchial structures, predominate. Large taxa are more sensitive than small taxa to hypoxia. Crustaceans and echinoderms are typically more sensitive to hypoxia, with lower oxygen thresholds, than annelids, sipunculans, molluscs and cnidarians. Mobile fish and shellfish will migrate away from low-oxygen areas. Within a species, early life stages may be more subject to oxygen stress than older life stages. Hypoxia alters both the structure and function of benthic communities, but effects may differ with regional hypoxia history. Human-caused hypoxia is generally linked to eutrophication, and occurs adjacent to watersheds with large populations or agricultural activities. Many occurrences are seasonal, within estuaries, fjords or enclosed seas of the North Atlantic and the NW Pacific Oceans. Benthic faunal responses, elicited at oxygen levels below 2 ml L-1, typically involve avoidance or mortality of large species and elevated abundances of enrichment opportunists, sometimes prior to population crashes. Areas of low oxygen persist seasonally or continuously beneath upwelling regions, associated with the upper parts of oxygen minimum zones (SE Pacific, W Africa, N Indian Ocean). These have a distribution largely distinct from eutrophic areas and support a resident fauna that is adapted to survive and reproduce at oxygen concentrations <0.5 ml L-1. Under both natural and eutrophication-caused hypoxia there is loss of diversity, through attrition of intolerant species and elevated dominance, as well as reductions in body size. These shifts in species composition and diversity yield altered trophic structure, energy flow pathways, and corresponding ecosystem services such as production, organic matter cycling and organic C burial. Increasingly the influences of nature and humans interact to generate or exacerbate hypoxia. A warmer ocean is more stratified, holds less oxygen, and may experience greater advection of oxygen-poor source

Coniacian sandstones from the North Sudetic Synclinorium revisited: palaeoenvironmental and palaeogeographical reconstructions based on trace fossil analysis and associated body fossils

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Chrząstek, Alina; Wypych, Monika

2018-03-01

The Coniacian quartz sandstones (Żerkowice Member, Rakowice Wielkie Formation) that crop out at quarries near Czaple-Nowa Wieś Grodziska (North Sudetic Synclinorium) contain a low-diversity assemblage of trace fossils: Gyrochorte isp., Ophiomorpha nodosa (Lundgren, 1891), Ophiomorpha isp., Phycodes cf. curvipalmatum (Pollard, 1981), ?Phycodes isp., Planolites cf. beverleyensis (Billings, 1862), Thalassinoides paradoxicus (Woodward, 1830) and ?Thalassinoides isp. Moreover, interesting compound burrow systems, here referred to as Thalassinoides-Phycodes cf. palmatus and ?Thalassinoides-Phycodes, were recognised at the Czaple Quarry. Additionally, ?Gyrochorte isp., Phycodes cf. flabellum (Miller and Dyer, 1878) and ?Treptichnus isp. were encountered at correlative levels in the Rakowice Małe Quarry. Some of these ichnotaxa have not been recorded previously from Coniacian sandstones of the Żerkowice Member. Additionally, in slabs of these sandstones, the gastropod Nerinea bicincta (Bronn, 1836) and the bivalve Lima haidingeri (Zittel, 1866) were found. These interesting finds, in particular the gastropods, were already noted from the study area in the first half of the twentieth century by (Scupin (1912-1913)). Ethologically, the trace fossil assemblage is represented by domichnia or domichnia/fodinichnia (Ophiomorpha, Thalassinoides), fodinichnia (Phycodes) and pascichnia (Gyrochorte, Planolites). The compound burrow systems (Thalassinoides-Phycodes) are interpreted as dwelling/feeding structures. The possible tracemakers are crustaceans (Ophiomorpha, Thalassinoides) or worm-like animals (annelids and other) (Planolites, ?Phycodes, Gyrochorte and ?Treptichnus). The assemblage of trace fossils is characteristic of the Skolithos ichnofacies and Cruziana ichnofacies, typical of shallow-marine settings. Ichnological studies, as well as the presence of accompanying fossils (bivalves, gastropods), confirm the palaeoenvironmental reconstruction of the Żerkowice Member

Biodiversity and evolution of the Myxozoa.

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Canning, Elizabeth U; Okamura, Beth

2004-01-01

Myxozoans (phylum Myxozoa) are metazoan parasites utilizing invertebrate and (mainly) aquatic vertebrate hosts. They have in common with cnidarians the possession of virtually identical, highly complex organelles, namely the polar capsules in myxozoan spores, serving for attachment to new hosts and the nematocysts in surface epithelia of cnidarians, serving for food capture. Although myxozoan spores are multicellular, the simple trophic body forms of almost all species, reduced to syncytial plasmodia or single cells, reveal no clues to myxozoan ancestry or phylogenetic relationships. The myxozoan genus Buddenbrockia is one of only two known genera belonging to a clade which diverged early in the evolution of the Myxozoa. Today the Myxozoa are represented by two classes, the Myxosporea, containing all the better-known genera, which alternate between fish and annelids, and the Malacosporea, containing Buddenbrockia and Tetracapsuloides, parasitising bryozoans. The latter genus also infects salmonid fish, causing proliferative kidney disease (PKD). The enigmatic Buddenbrockia has retained some of its ancestral features in a body wall of two cell layers and a worm-like shape, maintained by four longitudinally-running muscle blocks, similar to a gutless nematode and suggestive of a bilaterian ancestry. Although some analyses of 18S rDNA sequences tend towards a cnidarian (diploblast) affinity for myxozoans, the majority of these studies place them within, or sister to, the Bilateria. The latter view is supported by their possession of central class Hox genes, so far considered to be synapomorphic for Bilateria. The simple body form is, therefore, an extreme example of simplification due to parasitism. Various hypotheses for the occurrence of identical complex organelles (nematocysts and polar capsules) in diploblast and triploblast phyla are evaluated: common ancestry, convergent evolution, gene transfer and, especially, endosymbiosis. A theory of the evolution of their

Macrofaunal communities associated with chemosynthetic habitats from the U.S. Atlantic margin: A comparison among depth and habitat types

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Bourque, Jill R.; Robertson, Craig M.; Brooke, Sandra; Demopoulos, Amanda W.J.

2016-01-01

Hydrocarbon seeps support distinct benthic communities capable of tolerating extreme environmental conditions and utilizing reduced chemical compounds for nutrition. In recent years, several locations of methane seepage have been mapped along the U.S. Atlantic continental slope. In 2012 and 2013, two newly discovered seeps were investigated in this region: a shallow site near Baltimore Canyon (BCS, 366–412 m) and a deep site near Norfolk Canyon (NCS, 1467–1602 m), with both sites containing extensive chemosynthetic mussel bed and microbial mat habitats. Sediment push cores, suction samples, and Ekman box cores were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 μm) in mussel beds, mats, and slope habitats at both sites. Community data from the deep site were also assessed in relation to the associated sediment environment (organic carbon and nitrogen, stable carbon and nitrogen isotopes, grain size, and depth). Infaunal assemblages and densities differed both between depths and among habitat types. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments and were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in BCS microbial mat habitats, but higher in mussel and slope sediments compared to NCS habitats. Multivariate statistical analysis revealed specific sediment properties as important for distinguishing the macrofaunal communities, including larger grain sizes present within NCS microbial mat habitats and depleted stable carbon isotopes (δ13C) in sediments present at mussel beds. These results suggest that habitat differences in the quality and source of organic matter are driving the observed patterns in the infaunal assemblages, including high β diversity and high variability in the macrofaunal community composition. This

Aspects on gametogenesis, fertilization and embryogenesis of two deep-sea polychaetes from Eastern Atlantic cold seeps

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Gaudron, S. M.; Hourdez, S.; Olu, K.

2017-11-01

We investigated two gonochoristic species of annelid polychaetes (one siboglinid and one polynoid) from cold seeps that ranged from 525 m to 3300 m in depth (Guiness, Worm Hole and Regab pockmarks) on the Gabon and Congo continental margins (Gulf of Guinea). Different aspects of gametogenesis (oocyte diameter, presence of ovisac, spermatozoa shape, and fecundity), fertilization (in vitro fertilization experiments: IVF) and embryogenesis (cleavage rate) were studied. The sampled siboglinid was a new species of Lamellibrachia and the second population of this genus in the Eastern Atlantic. Mean oocyte diameter was about 100 μm and fully-grown primary oocytes were stored in an ovisac, as in other studied siboglinids. The presence of a single spermatozoon was noted within an oviduct, indicating a possible internal fertilization. The rate of cell division at 6 °C was one cleavage every 20 h. Embryos developed normally to the blastula stage after 5-d post-fertilization at atmospheric pressure suggesting some pressure tolerance. The second polychaete was the scale-worm Branchipolynoe cf. seepensis that lives in commensalism in the mantle cavity of Bathymodiolus aff. boomerang. Anatomical reproductive features were similar to those described in B. seepensis from hydrothermal vents on Mid-Atlantic Ridge, with lecithotrophic larval development and continuous gametogenesis. We performed the first IVF carried out on gametes for any deep-sea polynoid species. Fertilization and development occurred but a number of abnormalities were observed demonstrating a limitation to embryogenesis at atmospheric pressure. The rate of cell division was three times faster at 8 °C than at 4 °C with a maximum stage of 8-cells reached after 72 h post-fertilization. We surprisingly observed some oocytes from the negative seawater control during IVF experiments cleaved to the 2-cell stage, demonstrating the possible occurrence of internal fertilization prior to IVF experiment or the accidental

Molecular Cloning and Characterization of Taurocyamine Kinase from Clonorchis sinensis: A Candidate Chemotherapeutic Target

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Tokuhiro, Shinji; Nagataki, Mitsuru; Jarilla, Blanca R.; Nomura, Haruka; Kim, Tae Im; Hong, Sung-Jong; Agatsuma, Takeshi

2013-01-01

Background Adult Clonorchis sinensis lives in the bile duct and causes endemic clonorchiasis in East Asian countries. Phosphagen kinases (PK) constitute a highly conserved family of enzymes, which play a role in ATP buffering in cells, and are potential targets for chemotherapeutic agents, since variants of PK are found only in invertebrate animals, including helminthic parasites. This work is conducted to characterize a PK from C. sinensis and to address further investigation for future drug development. Methology/Principal findings A cDNA clone encoding a putative polypeptide of 717 amino acids was retrieved from a C. sinensis transcriptome. This polypeptide was homologous to taurocyamine kinase (TK) of the invertebrate animals and consisted of two contiguous domains. C. sinensis TK (CsTK) gene was reported and found consist of 13 exons intercalated with 12 introns. This suggested an evolutionary pathway originating from an arginine kinase gene group, and distinguished annelid TK from the general CK phylogenetic group. CsTK was found not to have a homologous counterpart in sequences analysis of its mammalian hosts from public databases. Individual domains of CsTK, as well as the whole two-domain enzyme, showed enzymatic activity and specificity toward taurocyamine substrate. Of the CsTK residues, R58, I60 and Y84 of domain 1, and H60, I63 and Y87 of domain 2 were found to participate in binding taurocyamine. CsTK expression was distributed in locomotive and reproductive organs of adult C. sinensis. Developmentally, CsTK was stably expressed in both the adult and metacercariae stages. Recombinant CsTK protein was found to have low sensitivity and specificity toward C. sinensis and platyhelminth-infected human sera on ELISA. Conclusion CsTK is a promising anti-C. sinensis drug target since the enzyme is found only in the C. sinensis and has a substrate specificity for taurocyamine, which is different from its mammalian counterpart, creatine. PMID:24278491

[Effect of environmental factors on macroinvertebrate community structure in the Huntai River basin in the Huntai River basin].

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Li, Yan-li; Li, Yan-fen; Xu, Zong-xue

2015-01-01

In May-June 2012, macroinvertebrates were investigated at 66 sampling sites in the Huntai River basin in Northeast of China. A total of 72 macrobenthos species were collected, of which, 51 species (70.83%) were aquatic insects, 10 species (13.89%) were mollusks, 7 species (9.72%) were annelids, and 4 species (5.56%) were arthropods. First, 13 candidate metrics (EPT taxa, Dominant taxon%, Ephemeroptera%, Trichoptera%, mollusks%, Heptageniidae/Ephemeroptera; Hydropsychidae/ Trichoptera, Oligochaeta%, intolerant taxon% , tolerant taxon%, Collector%, Clingers%, Shannon-wiener index.) which belonged to six types were chosen to represent macroinvertebrate community structure by correlation analysis. Then, relationships between anthropogenic and physiography pressures and macroinvertebrate community structure variables were measured using redundancy analysis. Then, this study compared the relative influences of anthropogenic and physiographic pressures on macroinvertebrate community structure and the relative influences of anthropogenic pressures at reach, riparian and catchment scales by pRDA. The results showed all environmental factors explained 72.23% of the variation of macroinvertebrate community structure. In addition, a large proportion of the explained variability in macroinvertebrate community structure was related to anthropogenic pressures (48.9%) and to physiographic variables (11.8%), anthropogenic pressures at reach scale influenced most significantly macroinvertebrate community structure which explained 35.3% of the variation of macroinvertebrate community structure. pH, habitat, TN, CODMn, hardness, conductivity, total dissolved particle and ammonia influenced respectively explained 4%, 3.6%, 1.8%, 1.7%, 1.7%, 0.9%, 0.9% and 0.9% of the variation of macroinvertebrate community structure. The land use at riparian and catchment scale respectively explained 10% and 7% of the variation of macroinvertebrate community structure. Finally, the relationships of

Nitric oxide acts as a positive regulator to induce metamorphosis of the ascidian Herdmania momus.

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Ueda, Nobuo; Degnan, Sandie M

2013-01-01

Marine invertebrates commonly have a biphasic life cycle in which the metamorphic transition from a pelagic larva to a benthic post-larva is mediated by the nitric oxide signalling pathway. Nitric oxide (NO) is synthesised by nitric oxide synthase (NOS), which is a client protein of the molecular chaperon heat shock protein 90 (HSP90). It is notable, then, that both NO and HSP90 have been implicated in regulating metamorphosis in marine invertebrates as diverse as urochordates, echinoderms, molluscs, annelids, and crustaceans. Specifically, the suppression of NOS activity by the application of either NOS- or HSP90-inhibiting pharmacological agents has been shown consistently to induce the initiation of metamorphosis, leading to the hypothesis that a negative regulatory role of NO is widely conserved in biphasic life cycles. Further, the induction of metamorphosis by heat-shock has been demonstrated for multiple species. Here, we investigate the regulatory role of NO in induction of metamorphosis of the solitary tropical ascidian, Herdmania momus. By coupling pharmacological treatments with analysis of HmNOS and HmHSP90 gene expression, we present compelling evidence of a positive regulatory role for NO in metamorphosis of this species, in contrast to all existing ascidian data that supports the hypothesis of NO as a conserved negative regulator of metamorphosis. The exposure of competent H. momus larvae to a NOS inhibitor or an NO donor results in an up-regulation of NOS and HSP90 genes. Heat shock of competent larvae induces metamorphosis in a temperature dependent manner, up to a thermal tolerance that approaches 35°C. Both larval/post-larval survival and the appearance of abnormal morphologies in H. momus post-larvae reflect the magnitude of up-regulation of the HSP90 gene in response to heat-shock. The demonstrated role of NO as a positive metamorphic regulator in H. momus suggests the existence of inter-specific adaptations of NO regulation in ascidian

A new phylogeny and environmental DNA insight into paramyxids: an increasingly important but enigmatic clade of protistan parasites of marine invertebrates.

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Ward, Georgia M; Bennett, Martyn; Bateman, Kelly; Stentiford, Grant D; Kerr, Rose; Feist, Stephen W; Williams, Suzanne T; Berney, Cedric; Bass, David

2016-09-01

Paramyxida is an order of rhizarian protists that parasitise marine molluscs, annelids and crustaceans. They include notifiable pathogens (Marteilia spp.) of bivalves and other taxa of economic significance for shellfish production. The diversity of paramyxids is poorly known, particularly outside of commercially important hosts, and their phylogenetic position is unclear due to their extremely divergent 18S rDNA sequences. However, novel paramyxean lineages are increasingly being detected in a wide range of invertebrate hosts, and interest in the group is growing, marked by the first 'Paramyxean Working Group' Meeting held in Spain in February 2015. We review the diversity, host affiliations, and geographical ranges of all known paramyxids, present a comprehensive phylogeny of the order and clarify its taxonomy. Our phylogenetic analyses confirm the separate status of four genera: Paramarteilia, Marteilioides, Paramyxa and Marteilia. Further, as including M. granula in Marteilia would make the genus paraphyletic we suggest transferring this species to a new genus, Eomarteilia. We present sequence data for Paramyxa nephtys comb. n., a parasite of polychaete worms, providing morphological data for a clade of otherwise environmental sequences, sister to Marteilioides. Light and electron microscopy analyses show strong similarities with both Paramyxa and Paramyxoides, and we further discuss the validity of those two genera. We provide histological and electron microscopic data for Paramarteilia orchestiae, the type species of that genus originally described from the amphipod Orchestia; in situ hybridisation shows that Paramarteilia also infects crab species. We present, to our knowledge, the first known results of a paramyxid-specific environmental DNA survey of environmental (filtered water, sediment, etc.) and organismally-derived samples, revealing new lineages and showing that paramyxids are associated with a wider range of hosts and habitat types than previously

Do ampharetids take sedimented steps between vents and seeps? Phylogeny and habitat-use of Ampharetidae (Annelida, Terebelliformia) in chemosynthesis-based ecosystems.

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Eilertsen, Mari H; Kongsrud, Jon A; Alvestad, Tom; Stiller, Josefin; Rouse, Greg W; Rapp, Hans T

2017-10-31

A range of higher animal taxa are shared across various chemosynthesis-based ecosystems (CBEs), which demonstrates the evolutionary link between these habitats, but on a global scale the number of species inhabiting multiple CBEs is low. The factors shaping the distributions and habitat specificity of animals within CBEs are poorly understood, but geographic proximity of habitats, depth and substratum have been suggested as important. Biogeographic studies have indicated that intermediate habitats such as sedimented vents play an important part in the diversification of taxa within CBEs, but this has not been assessed in a phylogenetic framework. Ampharetid annelids are one of the most commonly encountered animal groups in CBEs, making them a good model taxon to study the evolution of habitat use in heterotrophic animals. Here we present a review of the habitat use of ampharetid species in CBEs, and a multi-gene phylogeny of Ampharetidae, with increased taxon sampling compared to previous studies. The review of microhabitats showed that many ampharetid species have a wide niche in terms of temperature and substratum. Depth may be limiting some species to a certain habitat, and trophic ecology and/or competition are identified as other potentially relevant factors. The phylogeny revealed that ampharetids have adapted into CBEs at least four times independently, with subsequent diversification, and shifts between ecosystems have happened in each of these clades. Evolutionary transitions are found to occur both from seep to vent and vent to seep, and the results indicate a role of sedimented vents in the transition between bare-rock vents and seeps. The high number of ampharetid species recently described from CBEs, and the putative new species included in the present phylogeny, indicates that there is considerable diversity still to be discovered. This study provides a molecular framework for future studies to build upon and identifies some ecological and

Dioctophymosis occurrence in two dogs in Guarapuava city - Parana State/ Ocorrência da dioctofimose em dois cães no município de Guarapuava - PR

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Marcos Aurélio Laidane Filho

2003-05-01

Full Text Available Dioctophyma renale (GOEZE, 1782 is a worldwide nematode that infects the kidneys and could be found in peritoneal cavity and other organs of dog and another species of domestic and wild animals, includes human species. The life cycle envolves one intermediate and often one paratenic host. In mustelids and in wild and domestic carnivores (DH, the adult parasite is usually located in the right kidney, like this the eggs can be eliminated with the urine. In the environment the eggs request an incubation period in half aquatic, needing to be ingested by IH (an annelid oligochaetes parasite of fish for if they turn infectantes (L3, that it can be ingested by a host paratênico (fish, crab or for HD. This paper reports the occurence of D. renale in two dogs assisted in the Veterinary Hospital in the Guarapuava city, PR.Dioctophyma renale (GOEZE, 1782 é um nematóide de ocorrência mundial que parasita os rins, podendo ser encontrado na cavidade peritoneal e outros órgãos do cão e outras espécies de animais domésticos e silvestres, inclusive o homem. O ciclo deste parasita é indireto, tendo como hospedeiro definitivo (HD os mustelídeos e canídeos; como hospedeiro intermediário (HI, um anelídeo oligoqueta parasita de brânquias de peixe. No HD, o parasita adulto localiza-se geralmente no rim direito, assim os ovos podem ser eliminados com a urina. No meio ambiente os ovos requerem um período de incubação em meio aquático, necessitando ser ingeridos pelo HI para se tornarem infectantes (L3, que pode ser ingerido por um hospedeiro paratênico (peixe, caranguejo ou pelo HD. O presente trabalho relata a ocorrência de D. renale em dois cães atendidos no Hospital Veterinário da Escola Superior de Ciências Agrárias de Guarapuava, PR.

Population subdivision of hydrothermal vent polychaete Alvinella pompejana across equatorial and Easter Microplate boundaries.

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Jang, Sook-Jin; Park, Eunji; Lee, Won-Kyung; Johnson, Shannon B; Vrijenhoek, Robert C; Won, Yong-Jin

2016-10-28

The Equator and Easter Microplate regions of the eastern Pacific Ocean exhibit geomorphological and hydrological features that create barriers to dispersal for a number of animals associated with deep-sea hydrothermal vent habitats. This study examined effects of these boundaries on geographical subdivision of the vent polychaete Alvinella pompejana. DNA sequences from one mitochondrial and eleven nuclear genes were examined in samples collected from ten vent localities that comprise the species' known range from 23°N latitude on the East Pacific Rise to 38°S latitude on the Pacific Antarctic Ridge. Multi-locus genotypes inferred from these sequences clustered the individual worms into three metapopulation segments - the northern East Pacific Rise (NEPR), southern East Pacific Rise (SEPR), and northeastern Pacific Antarctic Ridge (PAR) - separated by the Equator and Easter Microplate boundaries. Genetic diversity estimators were negatively correlated with tectonic spreading rates. Application of the isolation-with-migration (IMa2) model provided information about divergence times and demographic parameters. The PAR and NEPR metapopulation segments were estimated to have split roughly 4.20 million years ago (Mya) (2.42-33.42 Mya, 95 % highest posterior density, (HPD)), followed by splitting of the SEPR and NEPR segments about 0.79 Mya (0.07-6.67 Mya, 95 % HPD). Estimates of gene flow between the neighboring regions were mostly low (2 Nm  SEPR > PAR. Highly effective dispersal capabilities allow A. pompejana to overcome the temporal instability and intermittent distribution of active hydrothermal vents in the eastern Pacific Ocean. Consequently, the species exhibits very high levels of genetic diversity compared with many co-distributed vent annelids and mollusks. Nonetheless, its levels of genetic diversity in partially isolated populations are inversely correlated with tectonic spreading rates. As for many other vent taxa, this pioneering colonizer is

Succession and seasonal variation in epilithic biofilms on artificial reefs in culture waters of the sea cucumber Apostichopus japonicus

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Liu, Liming; Du, Rongbin; Zhang, Xiaoling; Dong, Shuanglin; Sun, Shichun

2017-01-01

Periphytic biofilms in aquaculture waters are thought to improve water quality, provide an additional food source, and improve the survival and growth of some reared animals. In the Asia- Pacific region, particularly in China, artificial reefs are commonly used in the commercial farming of sea cucumbers. However, few studies have examined the epilithic biofilms on the artificial reefs. To gain a better understanding of the succession of epilithic biofilms and their ecological processes in sea cucumber culture waters, two experiments were conducted in culture waters of the sea cucumber Apostichopus japonicus in Rongcheng, China, using artificial test panels. On the test panels of succession experiment, more than 67 species were identified in the biofilms. On the test panels of seasonal variation experiment, more than 46 species were recorded in the biofilms. In both experiments, communities of epilithic biofilms were dominated by diatoms, green algae and the annelid Spirorbis sp. In the initial colonization, the dominant diatoms were Cocconeis sp., Amphora spp. and Nitzschia closterium in June, which were succeeded by species of Navicula, Cocconeis and Nitzschia (July to September), and then by Licmophora abbreviata, Nitzschia closterium and Synedra spp. in the following months. A diatom bloom in the autumn and filamentous green algae burst in the summer were also observed. Ecological indices well annotated the succession and seasonal changes in epilithic communities. Multidimensional scaling (MDS) analysis found significant differences in diatom community composition among months and seasons. Fast growth of biofilms was observed in the summer and autumn, whereas the biomass of summer biofilms was largely made up of filamentous green algae. Present results show that the components of epilithic biofilms are mostly optimal foods of A. japonicus, suggesting that biofilms on artificial reefs may contribute important nutritional sources for sea cucumbers during their

Uranium contents and {sup 235}U/{sup 238}U atom ratios in soil and earthworms in western Kosovo after the 1999 war

Energy Technology Data Exchange (ETDEWEB)

Di Lella, L.A.; Nannoni, F.; Protano, G.; Riccobono, F. [Dipartimento di Scienze Ambientali ' G. Sarfatti' -Sezione di Geochimica Ambientale, University of Siena, Via del Laterino 8, I-53100, Siena (Italy)

2005-01-20

The uranium content and {sup 235}U/{sup 238}U atom ratio were determined in soils and earthworms of an area of Kosovo (Djakovica garrison), heavily shelled with depleted uranium (DU) ammunition during the 1999 war. The aim of the study was to reconstruct the small-scale distribution of uranium and assess the influence of the DU added to the surface environment. The total uranium concentration and the {sup 235}U/{sup 238}U ratio of topsoils showed great variability and were inversely correlated. The highest uranium levels (up to 31.47 mg kg{sup -1}) and lowest {sup 235}U/{sup 238}U ratios (minimum 0.002147) were measured in topsoils collected inside, or very close to, the clusters of DU penetrator holes. Regarding the fractionation of uranium in the surface soils, the uranium concentrations in the soluble and exchangeable fractions increased as the total uranium concentration of the topsoils increased. High and rather uniform percentage contents of uranium (24-36%) were associated with the poorly crystalline iron oxide phases of soils. In the U-enriched soils the elevated levels of the element were probably due to the presence of very small, unevenly distributed oxidized DU particles. The total uranium concentration in earthworms was in the range 0.142-0.656 mg kg{sup -1}, with the highest concentrations in Lumbricus terrestris. The juveniles of all three studied species seemed to accumulate uranium more than adults, probably due to age-related differences in metabolism. The {sup 235}U/{sup 238}U ratio in the earthworms was variable (0.005241-0.007266) and independent of both the total uranium contents in soils and the absolute uranium levels in the animals. Bioconcentration was greater at lower U concentrations in soil, probably due to an increasing rate of elimination of uranium by the earthworms as the soil contents of the element increase. The results of this study clearly indicate that DU was added to the soil of the study area. Nevertheless, the phenomenon was

Interactions between fauna and environment in recent alluvial soils (Dunajec River, SE Poland)

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Mikuś, Paweł; Uchman, Alfred

2017-04-01

Recent riverine system is a particular place for interactions between fauna and the deposited sediments containing young and old alluvial soils. It is characterized by large energy gradients in relatively short time, which forces special adaptations of burrowing animals recorded in bioturbation structures. Predators produce mainly shelter burrows (interpreted as domichnia), and saprofags, especially earthworms, produce locomotion and feeding structures (pascichnia). Such structures have been studied in non- or poorly vegetated, sandy or muddy Holocene alluvia in the lower reach of the Dunajec River flowing through the Carpathian Foredeep in SE Poland. The observed burrows are mostly produced by a variety of organisms, including the European mole (Talpa europaea), common earthworm (Lumbricus terrestris), ground beetles (Carabidae), solitary bees (Ammophila), red fox (Vulpes vulpes), European beaver (Castor fiber), shrews (Soricidae), European otter (Lutra lutra), several species of mice (Muridae), voles (Myodae, Microtae), and the swallow sand martin (Riparia riparia). Burrows of a few species of ground beetles have been subjected to more detailed studies. Fertile deposits of older (early to middle Holocene) terraces, formed with many long-term interruptions in sedimentation processes, have a well-developed soil levels, more vulnerable to burrowing than recently deposited sediments. The terraces contain layers of sands and muds, which primary sedimentary structures and layer boundaries are completely or partly disturbed by bioturbation. Organic-rich muds have been moved up and down and mixed with sand. Moreover, sediments have been leached into open burrows during floods or rainfalls. In the natural levee sediments, mostly fine to medium sands, are horizontally burrowed, foremost by earthworms (Lumbricidae). Vertical, long (over 2 m deep) burrows of larger earthworms cross cut the natural levee sediments and enter buried soils. They were formed during a long period

Priming effect in topsoil and subsoil induced by earthworm burrows

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Thu, Duyen Hoang Thi

2017-04-01

Earthworms (Lumbricus terrestris L.) not only affect soil physics, but they also boost microbial activities and consequently important hotspots of microbial mediated carbon and C turnover through their burrowing activity. However, it is still unknown to which extend earthworms affect priming effect in top- and subsoil horizons. More labile C inputs in earthworm burrows were hypothesized to trigger higher priming of soil organic matter (SOM) decomposition compared to rhizosphere and bulk soil. Moreover, this effect was expected to be more pronounced in subsoil due to its greater C and nutrient limitation. To test these hypotheses, biopores and bulk soil were sampled from topsoil (0-30 cm) and two subsoil depths (45-75 and 75-105 cm). Additionally, rhizosphere samples were taken from the topsoil. Total organic C (Corg), total N (TN), total P (TP) and enzyme activities involved in C-, N-, and P-cycling (cellobiohydrolase, β-glucosidase, xylanase, chitinase, leucine aminopeptidase and phosphatase) were measured. Priming effects were calculated as the difference in SOM-derived CO2 from soil with or without 14C-labelled glucose addition. Enzyme activities in biopores were positively correlated with Corg, TN and TP, but in bulk soil this correlation was negative. The more frequent fresh and labile C inputs to biopores caused 4 to 20 time higher absolute priming of SOM turnover due to enzyme activities that were one order of magnitude higher than in bulk soil. In subsoil biopores, reduced labile C inputs and lower N availability stimulated priming twofold greater than in topsoil. In contrast, a positive priming effect in bulk soil was only detected at 75-105 cm depth. We conclude that earthworm burrows provide not only the linkage between top- and subsoil for C and nutrients, but strongly increase microbial activities and accelerate SOM turnover in subsoil, contributing to nutrient mobilization for roots and CO2 emission increase as a greenhouse gas. Additionally, the

Purification and characterization of a chemoattractant from electric shock-induced earthworm secretion, its receptor binding, and signal transduction through the vomeronasal system of garter snakes.

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Jiang, X C; Inouchi, J; Wang, D; Halpern, M

1990-05-25

Following shocks with low voltage electric current, earthworms, Lumbricus terrestris, secrete a yellow mucus that has alarm properties for conspecifics and chemoattractive properties for garter snakes, Thamnophis sirtalis. A proteinaceous chemoattractant for garter snakes has been isolated and purified to homogeneity from such secretions by means of permeation chromatography and semipreparative nondenaturing polyacrylamide gel electrophoresis. The purified protein is highly attractive to garter snakes; it loses its activity after proteolytic digestion. It is a glycoprotein consisting of a single polypeptide chain with an NH2-terminal alanine. This chemoattractant has a minimum molecular mass of 15.4 kDa calculated from its amino acid and carbohydrate contents and an apparent molecular mass of about 20 kDa as estimated from sodium dodecyl sulfate-polyacrylamide gel electrophoresis. It has a pI of about 4.0, and it binds wheat germ agglutinin but not concanavalin A. This chemoattractant shows a protein to carbohydrate ratio of 2.0 +/- 0.08 (n = 5) and a ratio of total sugar to amino sugar of 1.9 +/- 0.08 (n = 3). The sequence of its NH2-terminal 15 amino acid residues has been determined. Studies were also conducted on the chemosignal transduction through the vomeronasal sensory system of the garter snake. Dot blot analysis showed that the purified chemoattractant bound to snake vomeronasal sensory epithelial membrane fractions. It did not bind to membrane extracts of the nonsensory epithelium of the vomeronasal mushroom body. The chemoattractant also bound specifically to vomeronasal sensory epithelial membrane in a reversible and saturable fashion with Kd and Bmax values of about 0.3 microM and 0.4 nmol/mg of protein, respectively. In electrophysiological studies, the chemoattractant applied to the vomeronasal epithelium caused an increase in firing rate of individual neurons in the accessory olfactory bulb of garter snakes, the projection site for vomeronasal

Biocontrol of the toxigenic plant pathogen Fusarium culmorum by soil fauna in an agroecosystem.

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Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Weinert, Joachim; Brunotte, Joachim

2017-08-01

In 2011 and 2013, a field experiment was conducted in a winter wheat field at Adenstedt (northern Germany) to investigate biocontrol and interaction effects of important members of the soil food web (Lumbricus terrestris, Annelida; Folsomia candida, Collembola and Aphelenchoides saprophilus, Nematoda) on the phytopathogenic fungus Fusarium culmorum in wheat straw. Therefore, soil fauna was introduced in mesocosms in defined numbers and combinations and exposed to either Fusarium-infected or non-infected wheat straw. L. terrestris was introduced in all faunal treatments and combined either with F. candida or A. saprophilus or both. Mesocosms filled with a Luvisol soil, a cover of different types of wheat straw and respective combinations of faunal species were established outdoors in the topsoil of a winter wheat field after harvest of the crop. After a time span of 4 and 8 weeks, the degree of wheat straw coverage of mesocosms was quantified to assess its attractiveness for the soil fauna. The content of Fusarium biomass in residual wheat straw and soil was determined using a double-antibody sandwich (DAS)-ELISA method. In both experimental years, the infected wheat straw was incorporated more efficiently into the soil than the non-infected control straw due to the presence of L. terrestris in all faunal treatments than the non-infected control straw. In addition, Fusarium biomass was reduced significantly in all treatments after 4 weeks (2011: 95-99%; 2013:15-54%), whereupon the decline of fungal biomass was higher in faunal treatments than in non-faunal treatments and differed significantly from them. In 2011, Fusarium biomass of the faunal treatments was below the quantification limit after 8 weeks. In 2013, a decline of Fusarium biomass was observed, but the highest content of Fusarium biomass was still found in the non-faunal treatments after 8 weeks. In the soil of all treatments, Fusarium biomass was below the quantification limit. The earthworm species

Bone-Eating Worms Spread: Insights into Shallow-Water Osedax (Annelida, Siboglinidae from Antarctic, Subantarctic, and Mediterranean Waters.

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Sergi Taboada

Full Text Available Osedax, commonly known as bone-eating worms, are unusual marine annelids belonging to Siboglinidae and represent a remarkable example of evolutionary adaptation to a specialized habitat, namely sunken vertebrate bones. Usually, females of these animals live anchored inside bone owing to a ramified root system from an ovisac, and obtain nutrition via symbiosis with Oceanospirillales gamma-proteobacteria. Since their discovery, 26 Osedax operational taxonomic units (OTUs have been reported from a wide bathymetric range in the Pacific, the North Atlantic, and the Southern Ocean. Using experimentally deployed and naturally occurring bones we report here the presence of Osedax deceptionensis at very shallow-waters in Deception Island (type locality; Antarctica and at moderate depths near South Georgia Island (Subantarctic. We present molecular evidence in a new phylogenetic analysis based on five concatenated genes (28S rDNA, Histone H3, 18S rDNA, 16S rDNA, and cytochrome c oxidase I-COI-, using Maximum Likelihood and Bayesian inference, supporting the placement of O. deceptionensis as a separate lineage (Clade VI although its position still remains uncertain. This phylogenetic analysis includes a new unnamed species (O. 'mediterranea' recently discovered in the shallow-water Mediterranean Sea belonging to Osedax Clade I. A timeframe of the diversification of Osedax inferred using a Bayesian framework further suggests that Osedax diverged from other siboglinids during the Middle Cretaceous (ca. 108 Ma and also indicates that the most recent common ancestor of Osedax extant lineages dates to the Late Cretaceous (ca. 74.8 Ma concomitantly with large marine reptiles and teleost fishes. We also provide a phylogenetic framework that assigns newly-sequenced Osedax endosymbionts of O. deceptionensis and O. 'mediterranea' to ribospecies Rs1. Molecular analysis for O. deceptionensis also includes a COI-based haplotype network indicating that individuals from

A remarkable diversity of bone-eating worms (Osedax; Siboglinidae; Annelida

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Johnson Shannon B

2009-11-01

Full Text Available Abstract Background Bone-eating Osedax worms have proved to be surprisingly diverse and widespread. Including the initial description of this genus in 2004, five species that live at depths between 25 and 3,000 m in the eastern and western Pacific and in the north Atlantic have been named to date. Here, we provide molecular and morphological evidence for 12 additional evolutionary lineages from Monterey Bay, California. To assess their phylogenetic relationships and possible status as new undescribed species, we examined DNA sequences from two mitochondrial (COI and 16S rRNA and three nuclear genes (H3, 18S and 28S rRNA. Results Phylogenetic analyses identified 17 distinct evolutionary lineages. Levels of sequence divergence among the undescribed lineages were similar to those found among the named species. The 17 lineages clustered into five well-supported clades that also differed for a number of key morphological traits. Attempts to determine the evolutionary age of Osedax depended on prior assumptions about nucleotide substitution rates. According to one scenario involving a molecular clock calibrated for shallow marine invertebrates, Osedax split from its siboglinid relatives about 45 million years ago when archeocete cetaceans first appeared and then diversified during the late Oligocene and early Miocene when toothed and baleen whales appeared. Alternatively, the use of a slower clock calibrated for deep-sea annelids suggested that Osedax split from its siboglinid relatives during the Cretaceous and began to diversify during the Early Paleocene, at least 20 million years before the origin of large marine mammals. Conclusion To help resolve uncertainties about the evolutionary age of Osedax, we suggest that the fossilized bones from Cretaceous marine reptiles and late Oligocene cetaceans be examined for possible trace fossils left by Osedax roots. Regardless of the outcome, the present molecular evidence for strong phylogenetic concordance

Embryonic muscle development of Convoluta pulchra (Turbellaria-acoelomorpha, platyhelminthes).

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Ladurner, P; Rieger, R

2000-06-15

We studied the embryonic development of body-wall musculature in the acoel turbellarian Convoluta pulchra by fluorescence microscopy using phalloidin-bound stains for F-actin. During stage 1, which we define as development prior to 50% of the time between egg-laying and hatching, actin was visible only in zonulae adhaerentes of epidermal cells. Subsequent development of muscle occurred in two distinct phases: first, formation of an orthogonal grid of early muscles and, second, differentiation of other myoblasts upon this grid. The first elements of the primary orthogonal muscle grid appeared as short, isolated, circular muscle fibers (stage 2; 50% developmental time), which eventually elongated to completely encircle the embryo (stage 3; at 60% of total developmental time). The first primary longitudinal fibers appeared later, along with some new primary circular fibers, by 60-63% of total developmental time (stage 4). From 65 to 100% of total developmental time (stages 5 to 7), secondary fibers, using primary fibers as templates, arose; the number of circular and longitudinal muscles thus increased, and at the same time parenchymal muscles began appearing. Hatchlings (stage 8) possessed about 25 circular and 30 longitudinal muscles as well as strong parenchymal muscles. The remarkable feature of the body wall of many adult acoel flatworms is that longitudinal muscles bend medially and cross each other behind the level of the mouth. We found that this development starts shortly after the appearance of the ventral mouth opening within the body wall muscle grid. The adult organization of the body-wall musculature consists of a grid of several hundred longitudinal and circular fibers and a few diagonal muscles. Musculature of the reproductive organs developed after hatching. Thus, extensive myogenesis must occur also during postembryonic development. Comparison between the turbellarians and the annelids suggests that formation of a primary orthogonal muscle grid and

Alterations in macroinvertebrate spatial patterns in coastal lagoons: Óbidos (NW coast of Portugal) 1984 versus 2002

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Rodrigues, Ana Maria; Quintino, Victor; Pereira, Fábio; Freitas, Rosa

2012-09-01

The macroinvertebrate spatial distribution patterns in the Lagoon of Óbidos were studied in 1984 and revisited in 2002. The overall surficial sediments and benthic community patterns show consistent similarities in the two sampling periods, but also important differences. The lagoon is relatively shallow, with about 1/3 of the area covered with extensive intertidal sand banks. These are interrupted by a navigation channel bordering the northern margin (1984) and, following dredging operations, a new navigation channel was opened along the southern margin (2002). The sediments in the navigation channels were coarser and with less percentage of fines in 2002 than in 1984. Arthropods dominated the species richness and abundance in 1984, but were much less important in 2002, when the community was dominated by molluscs and annelids, both in species numbers as well as in abundance. In 1984, the structure of the macrofauna communities closely followed a general model proposed for Atlantic and Mediterranean lagoons, with the marine, the transition and the lagoon communities occupying very well defined areas. This gradient was in accordance with an increase in the fines and organic matter content directed inwards allowing for the coexistence of several characteristic lagoon species with others characteristic of organic enriched sediments. In 2002 this spatial pattern is still recognized but the marine and the transition communities are spatially mixed, occupying both the entrance region and the navigation channels, whereas the characteristic lagoon community identified in 1984 was only recognized in a group of sites located along the southern margin in 2002. Several species show very important changes in their distribution extent in the lagoon system. These changes essentially show a generalized inward expansion of the distribution range of the marine species, in agreement with a larger influence of marine conditions toward the inner areas of the lagoon. This study shows

Caracterización preliminar de los invertebrados bentónicos capturados accidentalmente en la pesca de camarones en el norte del estado de Río de Janeiro, sudeste de Brasil Preliminary characterization of benthic invertebrates caught as by-catch in the shrimp fishery in the north of the Rio de Janeiro State, southeastern Brazil

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Igor David da Costa

2009-01-01

Full Text Available Para caracterizar la biodiversidad de invertebrados bentónicos que componen la fauna asociada a la pesca de camarones en el puerto del Farol de Sao Thomé, costa norte del estado de Río de Janeiro, se realizaron 11 pescas mensuales en el año 2004 con redes de arrastre de fondo, cuya área de operaciones comprende 3-5 mn desde la línea de costa, entre 22°00'S y 22°20'S. Los datos registrados de cada taxon y/o especie se refieren a la frecuencia de ocurrencia, frecuencia numérica, biomasa, índice de Importancia Relativa y abundancia. En total se registraron 27 especies de invertebrados bentónicos de Porifera, Cnidaria, Mollusca, Annelida, Crustácea, Echinodermata y Bryozoa. Crustácea fue el más representativo, tanto en número de ejemplares de Petrochirus diogenes, Hepatus pudibundus y Callinectes ornatos, como en biomasa de P. diogenes y H. pudibundas. En términos de frecuencia de ocurrencia en los muéstreos, 11 especies (40,7% fueron constantes; 6 (22,2% accesorias y 10 (37,0% accidentales.In order to characterize the biodiversity of the benthic invertebrate by-catch associated with the shrimp fishery at Farol de Sao Thome harbor, northern Rio de Janeiro State, Brazil, in 2004, 11 monthly trawls were conducted using bottom trawl nets between 22°00'S and 22°20'S and from 3 to 5 nm from the shoreline. The analyzed data for each talon and/or species include frequency of occurrence, numeric frequency, biomass, index of Relative Importance, and abundance. In total, 27 benthic invertebrate species were recorded, including Peripheral, Cnidarians, Mollusk, Annelid, Crustacea, Echinodermata, and Bryozoa. The most representative group was Crustacea, both in number of specimens (Petrochirus diogenes, Hepatus pudibundus, Callinectes ornatus and in biomass (P. diogenes, H. pudibundus. In terms of the frequency of occurrence in the samples, 11 species (40.7% were constant, 6 species (22.2% were accessories, and 10 species (37.0% were by-catch.

The distribution of macrofauna on the inner continental shelf of southeastern Brazil: The major influence of an estuarine system

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Zalmon, I. R.; Macedo, I. M.; Rezende, C. E.; Falcão, A. P. C.; Almeida, T. C.

2013-09-01

The environmental heterogeneity of the Campos Basin on the northern coast of Rio de Janeiro State was assessed by the benthic macrofauna on the platform adjacent to the Paraíba do Sul River (PSR) on the dry and rainy seasons. The samples were collected in triplicate from 33 sites using a van Veen grab during March 2009 - a period of higher precipitation and flow rate - and July 2009 - a period of lower precipitation and flow rate. The grab depths ranged from 12 to 97 m and were grouped into three strata: 1: 50 m. The particle size, total carbonate and total organic carbon in each sample were analyzed. Subsamples for the macrofauna analysis were washed, sieved with a 500 μm mesh and identified. The sediment was predominantly composed of sand, with mud pockets near the mouth of the river. The macrofauna included annelids, crustaceans, mollusks, echinoderms, cnidarians, nemerteans, cephalochordates, sipunculids and bryozoans. The density and richness were directly related to the depth, with both descriptors being higher during the rainy season and at depths greater than 50 m. This result is probably due to the higher availability of food in the river during this period and is corroborated by the predominance of deposit feeders in the deepest stratum. The number of individuals of each species was higher in the shallowest stratum, probably due to the higher productivity of this stratum. The rate of organic particulate matter flow from the coastal regions to the deeper regions can also be influenced by the material export dynamics of the river, which are more intense during the rainy season. These dynamics explain why a significantly higher number of individuals were observed in the rainy period in comparison to the dry one. Multivariate analyses identified differences between the sampling sites in the deepest stratum during both periods and revealed a stronger similarity between the shallow and intermediate strata, especially during the rainy season, which has a

Confocal analysis of nervous system architecture in direct-developing juveniles of Neanthes arenaceodentata (Annelida, Nereididae

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Jacobs David K

2010-06-01

Full Text Available Abstract Background Members of Family Nereididae have complex neural morphology exemplary of errant polychaetes and are leading research models in the investigation of annelid nervous systems. However, few studies focus on the development of their nervous system morphology. Such data are particularly relevant today, as nereidids are the subjects of a growing body of "evo-devo" work concerning bilaterian nervous systems, and detailed knowledge of their developing neuroanatomy facilitates the interpretation of gene expression analyses. In addition, new data are needed to resolve discrepancies between classic studies of nereidid neuroanatomy. We present a neuroanatomical overview based on acetylated α-tubulin labeling and confocal microscopy for post-embryonic stages of Neanthes arenaceodentata, a direct-developing nereidid. Results At hatching (2-3 chaetigers, the nervous system has developed much of the complexity of the adult (large brain, circumesophageal connectives, nerve cords, segmental nerves, and the stomatogastric nervous system is partially formed. By the 5-chaetiger stage, the cephalic appendages and anal cirri are well innervated and have clear connections to the central nervous system. Within one week of hatching (9-chaetigers, cephalic sensory structures (e.g., nuchal organs, Langdon's organs and brain substructures (e.g., corpora pedunculata, stomatogastric ganglia are clearly differentiated. Additionally, the segmental-nerve architecture (including interconnections matches descriptions of other, adult nereidids, and the pharynx has developed longitudinal nerves, nerve rings, and ganglia. All central roots of the stomatogastric nervous system are distinguishable in 12-chaetiger juveniles. Evidence was also found for two previously undescribed peripheral nerve interconnections and aspects of parapodial muscle innervation. Conclusions N. arenaceodentata has apparently lost all essential trochophore characteristics typical of

Localization of neuropeptide gene expression in larvae of an echinoderm, the starfish Asterias rubens

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Tatiana D Mayorova

2016-12-01

Full Text Available Neuropeptides are an ancient class of neuronal signaling molecules that regulate a variety of physiological and behavioral processes in animals. The life cycle of many animals includes a larval stage(s that precedes metamorphic transition to a reproductively active adult stage but, with the exception of Drosophila melanogaster and other insects, research on neuropeptide signaling has hitherto largely focused on adult animals. However, recent advances in genome/transcriptome sequencing have facilitated investigation of neuropeptide expression/function in the larvae of protostomian (e.g. the annelid Platynereis dumerilii and deuterostomian (e.g. the urochordate Ciona intestinalis invertebrates. Accordingly, here we report the first multi-gene investigation of larval neuropeptide precursor expression in a species belonging to the phylum Echinodermata - the starfish Asterias rubens. Whole-mount mRNA in situ hybridization was used to visualize in bipinnaria and brachiolaria stage larvae the expression of eight neuropeptide precursors: L-type SALMFamide (S1, F-type SALMFamide (S2, vasopressin/oxytocin-type, NGFFYamide, thyrotropin-releasing hormone-type, gonadotropin-releasing hormone-type, calcitonin-type and corticotropin-releasing hormone-type. Expression of only three of the precursors (S1, S2, NGFFYamide was observed in bipinnaria larvae but by the brachiolaria stage expression of all eight precursors was detected. An evolutionarily conserved feature of larval nervous systems is the apical organ and in starfish larvae this comprises the bilaterally symmetrical lateral ganglia, but only the S1 and S2 precursors were found to be expressed in these ganglia. A prominent feature of brachiolaria larvae is the attachment complex, comprising the brachia and adhesive disk, which mediates larval attachment to a substratum prior to metamorphosis. Interestingly, all of the neuropeptide precursors examined here are expressed in the attachment complex, with

Spatial distribution of microphytobenthos, meiofauna and macrofauna in the north-western Adriatic Sea: a synoptic study

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Annalisa Franzo

2015-12-01

Full Text Available In view of the general paucity of integrated information on offshore benthic communities in the Adriatic Sea and given the vulnerability of this particular coastal system, microphytobenthos, meiofauna and macrofauna were synoptically investigated in front of the Emilia-Romagna coast (northern Adriatic Sea in September 2010 and March 2011. As required by the Marine Strategy Framework Directive, which extends its action beyond the territorial waters (within 12 nmi of the Member States, our findings could help to fill the gap of knowledge on the environmental status in offshore areas since the study was carried out also at >12 nmi from the coastline. In fact, sediment samples for the analysis of the benthic communities were collected from a 10-point-station grid that covered an area of about 400 km2 with water depths ranging from 13 to 50 m. The variability of the sediment grain size and other chemical variables in the sediment suggests the presence of two distinct environmental contexts that enhance the proliferation of different benthic communities. At the inshore stations (depth <20 m the higher sand percentages and the maxima of dissolved inorganic nitrogen concentrations indicate the presence of hydrodynamic perturbations and the influence of nutrient loads of terrestrial origin. Inshore, both meio- and macrofaunal communities were poorly structured and dominated by relatively more opportunistic taxa, such as nematodes and the bivalve Corbula gibba. Offshore stations (depth >20 m had muddier sediments, which likely exerted a greater retention of sediment-bound organic matter. These conditions seemed to favour benthic deposit feeders like meio- and macrofaunal annelids. Surprisingly, a conspicuous microphytobenthic community, mainly represented by the diatom Paralia sulcata, has been observed even at remarkable depths (~50 m opening new questions regarding the role of these organisms in dim-light conditions. Although the investigated benthic

Repression of fungal plant pathogens and fungal-related contaminants: Selected ecosystem services by soil fauna communities in agroecosystems

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Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Brunotte, Joachim; Weinert, Joachim

2017-04-01

In agroecosystems soil-borne fungal plant diseases are major yield-limiting factors which are difficult to control. Fungal plant pathogens, like Fusarium species, survive as a saprophyte in infected tissue like crop residues and endanger the health of the following crop by increasing the infection risk for specific plant diseases. In infected plant organs, these pathogens are able to produce mycotoxins. Mycotoxins like deoxynivalenol (DON) persist during storage, are heat resistant and of major concern for human and animal health after consumption of contaminated food and feed, respectively. Among fungivorous soil organisms, there are representatives of the soil fauna which are obviously antagonistic to a Fusarium infection and the contamination with mycotoxins. Specific members of the soil macro-, meso-, and microfauna provide a wide range of ecosystem services including the stimulation of decomposition processes which may result in the regulation of plant pathogens and the degradation of environmental contaminants. Investigations under laboratory conditions and in field were conducted to assess the functional linkage between soil faunal communities and plant pathogenic fungi (Fusarium culmorum). The aim was to examine if Fusarium biomass and the content of its mycotoxin DON decrease substantially in the presence of soil fauna (earthworms: Lumbricus terrestris, collembolans: Folsomia candida and nematodes: Aphelenchoides saprophilus) in a commercial cropping system managed with conservation tillage located in Northern Germany. The results of our investigations pointed out that the degradation performance of the introduced soil fauna must be considered as an important contribution to the biodegradation of fungal plant diseases and fungal-related contaminants. Different size classes within functional groups and the traits of keystone species appear to be significant for soil function and the provision of ecosystem services as in particular L. terrestris revealed to

The effects of repeated applications of the molluscicide metaldehyde and the biocontrol nematode Phasmarhabditis hermaphrodita on molluscs, earthworms, nematodes, acarids and collembolans: a two-year study in north-west Spain.

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Iglesias, Javier; Castillejo, José; Castro, Ramón

2003-11-01

Over two years, six consecutive field experiments were done in which the chemical molluscicide metaldehyde and the nematode biocontrol agent Phasmarhabditis hermaphrodita (Schneider) were applied at the standard field rates to replicated mini-plots successively planted with lettuce, Brussels sprouts, leaf beet and cabbage, to compare the effectiveness of different treatments in reducing slug damage to the crops. Soil samples from each plot were taken prior to the start of the experiments, and then monthly, to assess the populations of slugs, snails, earthworms, nematodes, acarids and collembolans. The experiments were done on the same site and each plot received the same treatment in the six experiments. The six treatments were: (1) untreated controls, (2) metaldehyde pellets, (3 and 4) nematodes applied to the planted area 3 days prior to planting without or with previous application of cow manure slurry, (5) nematodes applied to the area surrounding the planted area 3 days prior to planting, and (6) nematodes applied to the planted area once (only in the first of the six consecutive experiments). Only the metaldehyde treatment and the nematodes applied to the planted area at the beginning of each experiment without previous application of manure significantly reduced slug damage to the plants, and only metaldehyde reduced the number of slugs contaminating the harvested plants. The numbers of slugs, snails and earthworms in soil samples were compared among the six treatments tested: with respect to the untreated controls, the numbers of Deroceras reticulatum (Müller) were significantly affected only in the metaldehyde plots, and the numbers of Arion ater L only in the plots treated with nematodes applied to the planted area 3 days prior to planting without previous application of manure; numbers of snails (Ponentina ponentina (Morelet) and Oxychilus helveticus (Blum)) were not affected by the treatment. The total numbers of all earthworm species and of Lumbricus

Occurrence of parasitism by Dioctophyma renale in ring-tailed coatis (Nasua nasua of the Tiete Ecological Park, São Paulo, Brazil Ocorrência de parasitismo por Dioctophyma renale em quati (Nasua nasua do Parque Ecológico Tietê, São Paulo

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Liliane Milanelo

2009-12-01

Full Text Available Dioctophymosis is a worldwide renal parasitosis caused by the Dioctophyma renale nematode, which results in progressive destruction of renal tissue. Aquatics annelids are considered the main intermediate hosts and the literature refers as permanent hosts of dogs, wild mammals and even humans. During procedures for population control of coatis (Nasua nasua in the Ecological Park of Tietê (PET, was noticed the presence of parasitosis by D. renale. From 68 animals, males and females, young and adults, submitted to exploratory laparotomy, 51 were positive for the presence of worms, 9 were found only in the right kidney. In 10 cases, in addition to right kidney parasitism, worms were also observed in the abdominal cavity. In 24 cases D. renale was found only in the abdominal cavity and in 8 animals the right kidney was reduced to a small rigid structure. The study showed that the preferred site for parasitism of the worm, considered erratic, was the abdominal cavity in 66.66% of the cases.A dioctofimose é uma parasitose renal causada pelo nematóide Dioctophyma renale conhecida por gerar a destruição progressiva do parênquima renal. Anelídeos de água doce são considerados os principais hospedeiros intermediários e a literatura refere como hospedeiros definitivos cães domésticos, mamíferos selvagens e até seres humanos. Durante procedimentos de controle populacional de quatis (Nasua nasua no Parque Ecológico do Tietê (PET, evidenciou-se a presença do parasitismo por D. renale. Sessenta e oito animais foram submetidos à laparotomia, machos e fêmeas, jovens e adultos, dos quais 51 foram positivos para presença do parasita. Em 9 animais o parasita esteve presente apenas no rim direito; em 10 animais D. renale parasitava o rim direito e a cavidade abdominal simultaneamente. Em outros 24 quatis o parasita foi encontrado apenas na cavidade abdominal e em 8 animais o rim direito foi reduzido apenas a uma pequena estrutura rígida. O estudo

Macrobenthic fauna community in the Middle Songkhla Lake, Southern Thailand

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Angsupanich, S.

2005-02-01

Full Text Available A bimonthly investigation of macrobenthic fauna at the area from Ban Pak Khat to Ban Leam Chong Thanon in the Inner Songkhla Lake from February 1998 to February 1999 was undertaken to determine the species richness and abundance. A total of 7 phyla and 161 species were identified. Annelida (58 species, Arthropoda (64 species and Mollusca (23 species were the major phyla while Nemertea (1 species, Platyhelminthes (1 species, Cnidaria (4 species and Chordata (10 species were the minor. Fifty-seven speciesof Polychaete annelids were found. The highest species richness (14 species was in the Nereididae Family, of which Ceratonereis burmensis and Namalycastis indica were predominant. Nephtys sp. and Heteromastus sp. were not so highly abundant but appeared at almost all stations through every sampling month, while Prionospio cirrifera and Pseudopolydora kempi were found in higher densities but with narrower distribution. Ficopomatus sp. and unidentified Terebellidae were not commonly found, but occasionally reached a high density. Amphipods gave the highest species richness (22 species, with Photis longicaudata distributed widely and in all months. Five species of Tanaidaceans were found with Apseudes sapensis the second most dominant (max. 5044 individuals m-2 in February in the overall fauna. Isopoda were not as densely found as tanaidaceans but there were many species (18 species. Cyathura sp.1 was the most dominant isopod. Brachidontes arcuatulus was the most dominant bivalve (max. 29449 individuals m-2 in April, especially at stations with a sand-gravel substrate. The mean density of total macrobenthic fauna among stations ranged from 920 to 10620 ind. m-2 while the monthly densities ranged from 1520 to 6160 ind.m-2. The mean density of macrobenthic fauna was highest in the dry season (April. The species richness among stations ranged from65 to 105 species while varying from 81 to 112 species during the different months. The highest species

Diversity, natural history, and geographic distribution of snakes in the Caatinga, Northeastern Brazil.

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Guedes, Thaís B; Nogueira, Cristiano; Marques, Otavio A V

2014-09-19

prey, as arthropods, annelids, and mollusks. In relation to time of activity, 35.7% of snakes are both diurnal and nocturnal, 33.0% are strictly nocturnal, and 30.4% are diurnal. The data provided herein increase the list of Caatinga snake species from 50 to 112, and includes detailed maps and information on geographic distribution. The Caatinga snake assemblage shows high richness and endemism levels, and our results highlight the usefulness of basic natural history data and revision of voucher specimens as baseline information for biogeographic studies and conservation strategies. 

Anelídeos poliquetos do infralitoral em duas enseadas da região de Ubatuba: I. Características abióticas das enseadas Anenlids polychaets from the infralittoral zone of two bays in Ubatuba: I. Abiotic characteristies of the bays

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A. Cecília Z Amaral

1980-06-01

Full Text Available Considerando a reconhecida importância dos anelídeos poliquetos nas comunidades de fundo inconsolidados e para que se pudesse conhecer a composição de suas populaçoes, na região do infralitoral, bem como suas interrelações com esse ambiente, decidiu-se ampliar trabalho preliminar que abrangeu a faixa entre-marés. Foram amostradas 31 estações, sendo 24 na Enseada do Flamengo (continente e 7 na Enseada das Palmas (Ilha Anchieta. As coletas que consistiram na amostragem quantitativa global da macrofauna béntica, foram cíclicas de março de 1976 a fevereiro de 1977. Foram efetuadas medidas de temperatura, salinidade e oxigênio da água de fundo, bem como a coleta de amostras de sedimento para analise granulométrica e mineralógica, conteúdo de agua, calcário e matéria orgânica. Como introdução é descrita a área abrangida pela pesquisa e discutida a metodologia, com vistas à avaliação dos parâmetros ambientais. A temperatura da ãgua variou de 19,5ºC em julho a 29,5ºC em fevereiro. A sanilidade oscilou entre 30,0035,60 ‰ e o conteúdo de oxigénio dissolvido alcançou em média 4,10 ml/l. É característica da area a diversidade de ambientes, onde em conseqüência do hidrodinamismo o fundo é composto por sedimentos que vão desde areia grossa até silte, predominando os compostos por areia muito fina. Na maioria das vezes os sedimentos se revelaram pobres em matéria orgânica e com teores de calcário em geral inferiores a 8%. Os parâmetros analisados constituem fatores ecologicos, cuja importância na distribuição dos anelídeos poliquetos será avaliada na segunda parte deste trabalho.A programme was worked out to determine the composition of the population of polychaete annelids from shallow infralittoral and to evaluate the relationships of the population with environmental conditions. This paper describes the methods used and the seasonal fluctuations of the main physical and chemical parameters.

Digestate and ash as alternatives to conventional fertilisers: Benefits and threats to soil biota

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Marshall, Rachel; Lag-Brotons, Alfonso J.; Herbert, Ben; Hurst, Lois; Ostle, Nick; Dodd, Ian C.; Quinton, John; Surridge, Ben; Aiouache, Farid; Semple, Kirk T.

2017-04-01

will be discussed in the context of microbial community change in response to the amendments. At the macro-fauna scale, effects of amendments on earthworm (Eisenia fetida and Lumbricus terrestris) health were assessed using 14 day toxicity assays (4 application rates between 85-340 kgN.ha-1) and with 48 hour avoidance tests. In general, the addition of digestate-based fertilisers resulted in no observable toxic effects and earthworms did not significantly avoid these materials when compared to a conventional fertiliser. However, earthworms mortality was observed with one of the ash-digestate blends applied at 340 kgN.ha-1, potentially linked to changes in soil pH and elements speciation .It is therefore crucial that the effects of the amendments on soil properties, and the implications this has for soil communities at all scales, is understood to ensure sustainable soil management in agriculture.

Hotsphere illumination

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Razavi, Bahar S.; Hoang, Duyen; Liu, Shibin; Kuzyakov, Yakov

2017-04-01

Soils are the most heterogeneous parts of the biosphere, with an extremely high differentiation of properties and processes at all spatial and temporal scales. Importance of hotspheres- environment with abundant high microbial activity- i.e.: rhizosphere, detritusphere, biopores, spermosphere and hyphasphere calls for spatially explicit methods to illuminate distribution of microbial activities (Kuzyakov and Blagodatskaya, 2015). Zymography technique has previously been adapted to visualize the spatial dynamics of enzyme activities in rhizosphere. Here, we further developed soil zymography to obtain a higher resolution of enzyme activities by enabling direct contact of substrate-saturated membranes with soil. For the first time, we aimed at quantitative imaging of enzyme activities in various hotspheres. We calculated and compared percentage of enzymatic hotspots of four hotspheres: Spermosphere, rhizosphere, detritusphere and biopores. Spatial distribution of activities of two enzymes: β-glucosidase and phosphatase were analyzed in the spermosphere and rhizosphere of maize and lentil. Zymography has been done 3 days (spermosphere), 14 days (rhizosphere) after sowing. Further, manure was placed on surface of rhizoboxes to visualize spatio-temporal distribution of the enzyme activities in detritusphere after 25 days. Biopores were produced by earthworms (Lumbricus terrestris L.) in transparent boxes for 2 weeks and enzyme distribution were measured by zymography thereafter. The developed in situ direct soil zymography visualized the heterogeneity of enzyme activities along and across the roots. Spatial patterns of enzyme activities as a function of distance along the root demonstrated plant specific patterns of enzyme distribution: it was uniform and homogenous along the lentil roots, whereas the enzyme activities in maize rhizosphere were higher at the apical or proximal root parts. For the first time were applied "spatial point pattern analysis" to determine

Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae

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2018-01-01

ABSTRACT Gutless phallodrilines are marine annelid worms without a mouth or gut, which live in an obligate association with multiple bacterial endosymbionts that supply them with nutrition. In this study, we discovered an unusual symbiont community in the gutless phallodriline Inanidrilus exumae that differs markedly from the microbiomes of all 22 of the other host species examined. Comparative 16S rRNA gene sequence analysis and fluorescence in situ hybridization revealed that I. exumae harbors cooccurring gamma-, alpha-, and deltaproteobacterial symbionts, while all other known host species harbor gamma- and either alpha- or deltaproteobacterial symbionts. Surprisingly, the primary chemoautotrophic sulfur oxidizer “Candidatus Thiosymbion” that occurs in all other gutless phallodriline hosts does not appear to be present in I. exumae. Instead, I. exumae harbors a bacterial endosymbiont that resembles “Ca. Thiosymbion” morphologically and metabolically but originates from a novel lineage within the class Gammaproteobacteria. This endosymbiont, named Gamma 4 symbiont here, had a 16S rRNA gene sequence that differed by at least 7% from those of other free-living and symbiotic bacteria and by 10% from that of “Ca. Thiosymbion.” Sulfur globules in the Gamma 4 symbiont cells, as well as the presence of genes characteristic for autotrophy (cbbL) and sulfur oxidation (aprA), indicate that this symbiont is a chemoautotrophic sulfur oxidizer. Our results suggest that a novel lineage of free-living bacteria was able to establish a stable and specific association with I. exumae and appears to have displaced the “Ca. Thiosymbion” symbionts originally associated with these hosts. IMPORTANCE All 22 gutless marine phallodriline species examined to date live in a highly specific association with endosymbiotic, chemoautotrophic sulfur oxidizers called “Ca. Thiosymbion.” These symbionts evolved from a single common ancestor and represent the ancestral trait for

Whole-body gene expression pattern registration in Platynereis larvae.

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Asadulina, Albina; Panzera, Aurora; Verasztó, Csaba; Liebig, Christian; Jékely, Gáspár

2012-12-03

Digital anatomical atlases are increasingly used in order to depict different gene expression patterns and neuronal morphologies within a standardized reference template. In evo-devo, a discipline in which the comparison of gene expression patterns is a widely used approach, such standardized anatomical atlases would allow a more rigorous assessment of the conservation of and changes in gene expression patterns during micro- and macroevolutionary time scales. Due to its small size and invariant early development, the annelid Platynereis dumerilii is particularly well suited for such studies. Recently a reference template with registered gene expression patterns has been generated for the anterior part (episphere) of the Platynereis trochophore larva and used for the detailed study of neuronal development. Here we introduce and evaluate a method for whole-body gene expression pattern registration for Platynereis trochophore and nectochaete larvae based on whole-mount in situ hybridization, confocal microscopy, and image registration. We achieved high-resolution whole-body scanning using the mounting medium 2,2'-thiodiethanol (TDE), which allows the matching of the refractive index of the sample to that of glass and immersion oil thereby reducing spherical aberration and improving depth penetration. This approach allowed us to scan entire whole-mount larvae stained with nitroblue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/BCIP) in situ hybridization and counterstained fluorescently with an acetylated-tubulin antibody and the nuclear stain 4'6-diamidino-2-phenylindole (DAPI). Due to the submicron isotropic voxel size whole-mount larvae could be scanned in any orientation. Based on the whole-body scans, we generated four different reference templates by the iterative registration and averaging of 40 individual image stacks using either the acetylated-tubulin or the nuclear-stain signal for each developmental stage. We then registered to these templates the

Whole-body gene expression pattern registration in Platynereis larvae

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Asadulina Albina

2012-12-01

Full Text Available Abstract Background Digital anatomical atlases are increasingly used in order to depict different gene expression patterns and neuronal morphologies within a standardized reference template. In evo-devo, a discipline in which the comparison of gene expression patterns is a widely used approach, such standardized anatomical atlases would allow a more rigorous assessment of the conservation of and changes in gene expression patterns during micro- and macroevolutionary time scales. Due to its small size and invariant early development, the annelid Platynereis dumerilii is particularly well suited for such studies. Recently a reference template with registered gene expression patterns has been generated for the anterior part (episphere of the Platynereis trochophore larva and used for the detailed study of neuronal development. Results Here we introduce and evaluate a method for whole-body gene expression pattern registration for Platynereis trochophore and nectochaete larvae based on whole-mount in situ hybridization, confocal microscopy, and image registration. We achieved high-resolution whole-body scanning using the mounting medium 2,2’-thiodiethanol (TDE, which allows the matching of the refractive index of the sample to that of glass and immersion oil thereby reducing spherical aberration and improving depth penetration. This approach allowed us to scan entire whole-mount larvae stained with nitroblue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/BCIP in situ hybridization and counterstained fluorescently with an acetylated-tubulin antibody and the nuclear stain 4’6-diamidino-2-phenylindole (DAPI. Due to the submicron isotropic voxel size whole-mount larvae could be scanned in any orientation. Based on the whole-body scans, we generated four different reference templates by the iterative registration and averaging of 40 individual image stacks using either the acetylated-tubulin or the nuclear-stain signal for each developmental

Investigations of a novel fauna from hydrothermal vents along the Arctic Mid-Ocean Ridge (AMOR) (Invited)

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Rapp, H.; Schander, C.; Halanych, K. M.; Levin, L. A.; Sweetman, A.; Tverberg, J.; Hoem, S.; Steen, I.; Thorseth, I. H.; Pedersen, R.

2010-12-01

The Arctic deep ocean hosts a variety of habitats ranging from fairly uniform sedimentary abyssal plains to highly variable hard bottoms on mid ocean ridges, including biodiversity hotspots like seamounts and hydrothermal vents. Deep-sea hydrothermal vents are usually associated with a highly specialized fauna, and since their discovery in 1977 more than 400 species of animals have been described. This fauna includes various animal groups of which the most conspicuous and well known are annelids, mollusks and crustaceans. The newly discovered deep sea hydrothermal vents on the Mohns-Knipovich ridge north of Iceland harbour unique biodiversity. The Jan Mayen field consists of two main areas with high-temperature white smoker venting and wide areas with low-temperature seepage, located at 5-700 m, while the deeper Loki Castle vent field at 2400 m depth consists of a large area with high temperature black smokers surrounded by a sedimentary area with more diffuse low-temperature venting and barite chimneys. The Jan Mayen sites show low abundance of specialized hydrothermal vent fauna. Single groups have a few specialized representatives but groups otherwise common in hydrothermal vent areas are absent. Slightly more than 200 macrofaunal species have been identified from this vent area, comprising mainly an assortment of bathyal species known from the surrounding area. Analysis of stable isotope data also indicates that the majority of the species present are feeding on phytodetritus and/or phytoplankton. However, the deeper Loki Castle vent field contains a much more diverse vent endemic fauna with high abundances of specialized polychaetes, gastropods and amphipods. These specializations also include symbioses with a range of chemosynthetic microorganisms. Our data show that the fauna composition is a result of high degree of local specialization with some similarities to the fauna of cold seeps along the Norwegian margin and wood-falls in the abyssal Norwegian Sea

Effect of zinc-enriched natural sediments, in isolated and microcosm models, on three species of benthic invertebrates

International Nuclear Information System (INIS)

Galar Martinez, Marcela; Martinez-Tabche, Laura; Sanchez-Hidalgo, Eugenia; Lopez Lopez, Eugenia

2006-01-01

Availability of toxic in aquatic bodies is limited by the physicochemical characteristics of sediments and water, as well as by the interactions between the different xenobiotics and inhabits species. The aim of this work was to relate the effect produced by zinc (Zn) spiked in sediments of the Ignacio Ramirez dam (PIR), in isolated and microcosm models, on ATP concentration of three benthic organisms with the metal biodisponibility. The selected species were a crustacean, an annelid and a mollusk: Hyalella azteca (Amphipoda: Hyalellidae), Limnodrilus hoffmeisteri (Oligochaeta: Tubificidae) and Stagnicola attenuata (Basommatophora: Lymnaeidae), species that are found at high proportions in the reservoir and use different spaces in the benthos. Samples of sediments and organisms were collected from the PIR during the dry season (February of 1999). Metal concentration (Zn, Fe, Cu and Ni), pH, texture, particle size, total nitrogen and organic matter were determined in sediments. Sublethal studies were carried out using two types of static systems (isolated and in microcosm organisms). Both models contained PIR sediments enriched with Zn (nominal concentration of 0.8129 mg/kg) and synthetic water in a proportion of 1:4. The test organisms were added to the systems once the equilibrium was reached (2 hr) considering the biomass quantity with respect to volume (1.0 g of organism by each 100 ml of water:sediment). After 0, 12, 24, 36, 48 and 72 hr of exposure, samples of sediment and hydrobionts were taken, and Zn content was quantified by atomic absorption. ATP concentration was also determined in organisms. The effect produced by natural sediments spiked with Zn is increased by the presence of more than one specie in the system (microcosm). With respect to Zn levels, two of the organisms (L. hoffmeisteri y S. attenuata) tend to lose this metal in isolated and microcosm models, probably as a regulation strategy in its accumulation, as well as Fe presence in the

Diversidad zoológica asociada a un silvopastoreo leucaena-guinea con diferentes edades de establecimiento Zoological diversity associated to a silvopastural system leucaena-guinea grass with different establishment times

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Jatnel Alonso Lazo

2007-12-01

developed. An increase in the abundance of bioregulator insects was observed, and for the birds, the sampling time showed no interaction with the different sowing years. The macrofauna of the soil increased during the management of the system, and a dominance of annelids (Polyferetrina elongata and Oligochaeta elegans was noted during the 6th and 7th year of exploitation. The silvopastural system leucaena-guinea grass increases the biomass production and other biological components, and contributes to create a sustainable system which is compatible with the environment.

Spring habitat use by stocked one year old European sturgeon Acipenser sturio in the freshwater-oligohaline area of the Gironde estuary

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Acolas, M. L.; Le Pichon, C.; Rochard, E.

2017-09-01

Post release habitat selection was studied on forty eight 10-month-old hatchery reared European sturgeon (mean fork length 31.0 cm ± 3.0) in the tidal part of their native catchment using acoustic telemetry. Most of the fish reached the oligohaline estuary within 2-4 days (70 km downstream the release site). Seventy four percent of the fish migrated rapidly downstream of the estuary into mesohaline waters while 26% selected habitat in the freshwater/oligohaline part of the estuary based on their linearity and residency indices. We focused on individual habitat use of these fish. The home range size (HR) was calculated using two methods: the kernel utilization distribution (KUD) which is driven by the maximum detection location density, and the Brownian Bridge (BB) approach which allows the time component of the trajectory path to be taken into account. The average 50% HR KUD was 5.6 ± 2.7 km2 (range 1.1-10.3 km2) and it was estimated to be 6 times larger using the 50% HR BB method (average reaching 31.9 ± 20.7 km2, range 5.2-77.8 km2). Habitat characterization (available prey, substrate and depth) in the studied area was described and the Ivlev electivity index was calculated using the habitat within the 50% HR BB for each individual. Despite the spatial use of different core areas among the fish tagged, we observed a convergence in habitat preference. For substrates, sturgeons showed avoidance of gravel and large rocks as well as fine and medium gravel. There was a significant preference for sand, silts and clay. For depth, they exhibited a preference firstly for the 5-8 m depth range and secondly for the 2-5 m range, a strong avoidance of depth range 8-20 m and a slight avoidance of shallow (0-2 m) and intertidal areas. For prey, individual variability was high. The most homogenous results were found for annelid polychaeta, with a slight preference for areas with this group of preys which are abundant in the saline estuary. For some individuals, a preference

Dinámica de las Poblaciones de Lombrices en un Andisol Sometido a Distintos Sistemas de Uso del Suelo / Population Dynamics of Earthworms in an Andisol under Different Soil Use Systems

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Ramiro Ramírez Pisco

2013-12-01

: Pontoscolexcorenthrurus, Amynthas corticis and Martiodrilus sp. In thevirgin soil P. corenthrurus was present, the soil with five years of tillage showed a predominance of A. corticis and low presence of Martiodrilus sp. In soils after 10 years of tillage no annelid was found; however, during the fallow, earthworm population increasedsignificantly. It was found that the stable aggregates decreased depending on the duration of soil tillage, that it increased during fallow periods associated with the density of earthworms and their concentration in the first 10 cm of depth, confirming their involvement in the aggregation of soil.

[Generation continuity and integration].

Science.gov (United States)

Zakhvatkin, Iu A

2008-01-01

Transformation of the cyclic morphoprocesses in Protista toward the terminal-cyclic morphoprocesses in Metazoa had lead to integration of the fomer's life circles into the latter's ontogenesis and began to supply the newly emerging ecosystems with the regular income of mortomasses. According to the palintomic hypothesis of A.A. Zakhvatkin, it was the egg that became a means of the metazoan generation continuity, and not the half set of organells acquired by descendants of a divided maternal cell in Protozoa. Origin of Metazoa and of their ontogenesis was accomplished by hypetrophic distomy and subsequent palintomic division of the protist parental cell, these processes being comparable to the ovogenesis and ovocyte division in the Metazoa. Division process in the most primitive metazoans, Leptolida and Calcarea, retained certains features of its palintomic nature that are clear in the Ctenophora, the latter though specific being most similar in this respect to the spongs and not to the Coelenterata whith whom they were united in the same phylum formerly. The ovogenesis perfection controlled by the maternal organism and leading to an increment of the nuclear-plasmic tension due to enrichment of egg with the yolk, promoted the embrionization of development and formation of the egg morphogenetic environment providing for the earlier formation processes without participation of the parental recombined genotypes. With all this, far earlier appearence of symmetry elements of definitive forms is embriogenesis along the ascending trend from the lower Metazoa to the most advanced insects. The unordered correspondence of the polarity axis of egg and the oral-aboral axis of blastula-like larva (1) is replaced by protaxony (2) in which these axes coincide, all formation processes reaching their perfection in the homoquadrant spiral division of annelids, which became a means of ovoplasma segregation. Afterward, a herequadrant division and plagioxony are developed in the course

The effects of radionuclides on animal behavior

International Nuclear Information System (INIS)

Gagnaire, B.; Adam-Guillermin, C.; Bouron, A.; Lestaevel, P.

2011-01-01

to increased suicides, as well as modification of preferred nesting sites, reduced hatching success and fecundity in birds that live in the Chernobyl zone. No significant effect from caesium exposure was shown in laboratory experiments with rats, but few studies were conducted. Data on radioactive cadmium are not available in the literature, but the effects of its metallic form have been well studied. Cadmium induces mental retardation and psychomotor alterations in exposed populations and increases anxiety in rats, leading to depression. Cadmium exposure also results in well-documented effects on feeding and burrowing behavior in several invertebrate species (crustaceans, gastropods, annelids, bivalves) and on different kinds of fish behavior (swimming activity, fast-start response, anti-predatory behavior). Cobalt induces memory deficits in humans and may be involved in Alzheimer's disease; gamma irradiation by cobalt also decreases fecundity and alters mating behavior in insects. Collectively, data are lacking or are meagre on radionuclide pollutants, and a better knowledge of their actions on the cellular and molecular mechanisms that control animal behavior is needed. (authors)

Ecotoxicological characteristic of a soil polluted by radioactive elements and heavy metals before and after its bioremediation

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Georgiev, P.; Groudev, S.; Spasova, I.; Nikolova, M.

2012-04-01

containing only nutrients. The best leaching of uranium (66.3 %), radium (62.5 %), and copper (15.1 %) were measured in the variant in which the soil was subjected to mulching and irrigation with alkaline solutions containing hydocarbonate ions. Despite the higher removal of these pollutants from the soil, the acute soil toxicity towards earthworms (Lumbricus terrestris) was higher in comparison to the toxicity of soil that had been treated in the other variant. Furthermore, the highly alkaline soil pH (10.47) that was determined due to the applied alkaline leaching resulted in an acute soil toxicity to oats (Avena sativa) and clover (Trifolium repens) that was even higher in comparison to the toxicity of the non-treated soil. These data revealed that the soil detoxification was depended not only on the decrease of the total concentration and on the bioavailable forms of above-mentioned pollutants but also on the changes that had taken place in chemical and geotechnical properties of the treated soil.

Carbon isotope fractionation between amorphous calcium carbonate and calcite in earthworm-produced calcium carbonate

International Nuclear Information System (INIS)

Versteegh, E.A.A.; Black, S.; Hodson, M.E.

2017-01-01

In this study we investigate carbon isotope fractionation during the crystallization of biogenic calcium carbonate. Several species of earthworm including Lumbricus terrestris secrete CaCO_3. Initially a milky fluid comprising micro-spherules of amorphous CaCO_3 (ACC) is secreted into pouches of the earthworm calciferous gland. The micro-spherules coalesce and crystalize to form millimetre scale granules, largely comprising calcite. These are secreted into the earthworm intestine and from there into the soil. L. terrestris were cultured for 28 days in two different soils, moistened with three different mineral waters at 10, 16 and 20 °C. The milky fluid in the calciferous glands, granules in the pouches of the calciferous glands and granules excreted into the soil were collected and analysed by FTIR spectroscopy to determine the form of CaCO_3 present and by IRMS to determine δ"1"3C values. The milky fluid was ACC. Granules removed from the pouches and soil were largely calcite; the granules removed from the pouches contained more residual ACC than those recovered from the soil. The δ"1"3C values of milky fluid and pouch granules became significantly more negative with increasing temperature (p ≤ 0.001). For samples from each temperature treatment, δ"1"3C values became significantly (p ≤ 0.001) more negative from the milky fluid to the pouch granules to the soil granules (−13.77, −14.69 and −15.00 respectively at 10 °C; −14.37, −15.07 and −15.18 respectively at 16 °C and −14.89, −15.41 and −15.65 respectively at 20 °C). Fractionation of C isotopes occurred as the ACC recrystallized to form calcite with the fractionation factor ε_c_a_l_c_i_t_e_-_A_C_C = −1.20 ± 0.52‰. This is consistent with the crystallization involving dissolution and reprecipitation rather than a solid state rearrangement. Although C isotopic fractionation has previously been described between different species of dissolved inorganic carbon

Soil Communities of Central Park, New York City: A Biodiversity Melting Pot

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Ramirez, K. S.; Leff, J. W.; Wall, D. H.; Fierer, N.

2013-12-01

high: >540,000 bacterial and archaeal species; and >97,000 eukaryotic species (as determined using a 97% sequence similarity cutoff). The most dominant bacterial phyla include Proteobacteria, Acidobacteria, Bacteroidetes, Verrucomicrobia and Actinobacteria, and Archaea represent 1-8% of the sequences. Additionally, the distribution patterns of Acidobacteria and consequently beta-diversity, was strongly related to soil pH. The most dominant eukaryotic taxa include many Protists (Rhizara, Gregarinia), Fungi (Basidiomycota, Ascomycota), and Metazoa (Nematodes, Rotifers, Arthropods and Annelids). No single soil factor could predict eukaryotic distribution. Central Park soil diversity was strikingly similar to the diversity of the 57 global soils. Central Park and the global soils had similarities in alpha diversity, taxon abundances. Interestingly, there was significant overlap in a number of dominant species between Central Park and the global soils. Together these results represent the most comprehensive analysis of soil biodiversity conducted to date. Our data suggest that even well-studied locations like Central Park harbor very high levels of unexplored biodiversity, and that Central Park biodiversity is comparable to soil biodiversity found globally.

Anelídeos poliquetos do infralitoral em duas enseadas da região de Ubatuba: II. Aspectos ecológicos Anenlids polychaets from the infralittoral zone of two bays in Ubatuba: II. Ecological aspects

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A. Cecília Z Amaral

1980-06-01

écies apresentam povoamentos mais densos, revelando a presença de condições particularmente favoráveis, caracterizando o ambiente como ótimo.The populations of polychaetous annelids from the shallow infralittoral were analyzed for their composition and relationships with environmental parameters. As suggested by a previous survey, the area was divided in five sectors, according to local peculiarities. Some factors as the nature of sediments and abundance of organic matter have a selective function and seem to play an important role conditioning the degree of faunistic affinity between the different sectors.

Rapid breakthrough of pesticides via biopres into tile drains and shallow groundwater: a combined experimental and model study

Science.gov (United States)

Klaus, J.; Zehe, E.; Palm, J.; Schroeder, B.

2009-04-01

vertical soil profiles were excavated on the first day after the irrigation and two vertical profiles were excavated one week after the experiment. In those profiles soil samples were taken in a 10cm*10cm grid to analyse for the tracer concentrations. Based on that information the probability distribution function of the travel depths for each tracer could be calculated for two points in time. As burrows of deep digging earth worms often act as preferential pathways we counted the individuals of worm burrows using a nested sampling procedure. Though endogeic earthworms were apparent we didn't find any individuals of Lumbricus Terrestris nor macropores with diameter larger than 2 mm at a depth larger than 30-35 cm. So far we didn't identify those pathways that caused this rapid pesticide breakthrough into the tile drain, though a very small number macropores would suffice. Based on the collected data we will setup up a numerical model to simulate observed and flow and transport and test the hypothesis that earthworm burrows are the reason for this rapid breakthrough of pesticides into the tile drain.

Synaptic dimorphism in Onychophoran cephalic ganglia

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Z Peña-Contreras

2007-03-01

Full Text Available The taxonomic location of the Onychophora has been controversial because of their phenotypic and genotypic characteristics, related to both annelids and arthropods. We analyzed the ultrastructure of the neurons and their synapses in the cephalic ganglion of a poorly known invertebrate, the velvet worm Peripatus sedgwicki, from the mountainous region of El Valle, Mérida, Venezuela. Cephalic ganglia were dissected, fixed and processed for transmission electron microscopy. The animal has a high degree of neurobiological development, as evidenced by the presence of asymmetric (excitatory and symmetric (inhibitory synapses, as well as the existence of glial cell processes in a wide neuropile zone. The postsynaptic terminals were seen to contain subsynaptic cisterns formed by membranes of smooth endoplasmic reticulum beneath the postsynaptic density, whereas the presynaptic terminal showed numerous electron transparent synaptic vesicles. From the neurophylogenetic perspectives, the ultrastructural characteristics of the central nervous tissue of the Onychophora show important evolutionary acquirements, such as the presence of both excitatory and inhibitory synapses, indicating functional synaptic transmission, and the appearance of mature glial cells. Rev. Biol . Trop. 55 (1: 261-267. Epub 2007 March. 31.Estudiamos la ultraestructura de las neuronas y sus sinapsis del ganglio cefálico de un invertebrado poco conocido del phylum Onychophora: Peripatus sedgwicki de los Andes Venezolanos, utilizando para ello la microscopía electrónica de transmisión. La localización taxonómica de los onicóforos ha sido controversial debido a sus características fenotípicas y genotípicas que los relacionan tanto con los anélidos como con los artrópodos. Para este trabajo se estudió el ganglio cefálico de P. sedgwicki de la zona montañosa de El Valle, Mérida, Venezuela. El ganglio cefálico se localiza en la región anterior del animal y fue diseccionado

Radiometric and Instrumental Neutron Activation Analysis (INAA) of environmental specimens: lacustrine sediments from Danube Delta

International Nuclear Information System (INIS)

Duliu, Octavian G.

2002-01-01

The Danube River is the second most important river of Europe. It has a drainage basin estimated as 817 000 km 2 and caries every year between 35 and 70 megatons of solid matter to the Black Sea, where the discharged sediments are forming the present Danube Delta. The Delta continues to grow seaward at a rate of 25 - 35 meters annually. During its history, the evolution of the Danube Delta was closely connected with Danube's three branches: Chilia (the youngest one) in the North, Sulina in the middle and Sf. Gheorghe (the oldest one) in the South. The fluctuation of both Danube River solid flow and the Blake Sea level determined a significant variability of the sediment composition. Now, these sediments mainly consist of silt, sand, shell debris, etc. Former studies has shown that the sedimentation process, occurring over the entire Delta, is characterized by great variability of the sedimentation rates which takes values between 0.6 mm/year and 100 mm/year. The highest sedimentation rate corresponds to the lakes close to the Danube main branches. Therefore, the total thickness of lacustrine sediments varies between 0.5 m in Matita Lake and 2.5 m to 3 m in Lake Golovita. At the same time, as proven by direct and radiographic investigations, the bottom sediments of almost all lakes of the Danube Delta are intensively bioturbated by the living activity of various invertebrates, such as fresh water mollusks and annelid worms, as well as insects (especially chironomid) larvae which spend their life cycle buried in the mud. Despite their variability, sediments represent a sui generis history of past events across the entire catchment basin of a river. Events that refer to actual or passed history such as pollutants discharge, radioactive contamination, climatic changes, etc., could be retrieved by carefully investigation of vertical profile of both trace elements and artificial as well as natural radionuclides. Radiometric as well as high sensitivity and high

Some effects of pollutants in terrestrial ecosystems

Science.gov (United States)

Stickel, W.H.; McIntyre, A.D.; Mills, C.F.

1975-01-01

Summary: Pollutants tend to simplify plant and animal communities by causing a progressive loss of species. At the extreme, this leads to erosion and loss of soil fertility. Weedy, broadly adapted species increase. Among animals, carnivorous species and groups are often the first to suffer. This is partly because of their exposure at the top of the food chain, and partly, it appears, because of physiological differences. Species differences in susceptibility are abundant and are often critical. One result is that when one pest is controlled another is likely to flare up. Resistance appears commonly in insects and is known in other fast-breeding forms, including fishes, frogs, and rodents. Resistant individuals can carry toxicant loads that make them dangerous food for other animals. Some groups, including mollusks and annelids, are naturally resistant to many organohalogens and tend to accumulate them. Animals such as birds may carry lipophilic pollutants in large amounts with apparent safety until forced to draw upon their fat. They may then suffer delayed mortality, and no doubt suffer reproductive or behavioral effects at sublethal levels. Lipophilic pollutants in the brain rise when body lipids decrease and fall when body lipids increase. Mutagenesis can be caused by some common pollutants and the mutagenic properties of most chemicals are far too little known. Fortunately, common pesticides are not likely to be strong mutagens. Mutagenicity may be affecting certain long-lived and slow-breeding species in the wild, but most species have enough population turnover to swamp an occasional mutagenic event. Behavioral changes can be caused by relatively low levels of contaminants, but it is often hard to demonstrate them without using high dosages. Reproduction may or may not be affected adversely by low exposures. At certain exposures that are below the toxic levels of a chemical, a biostimulatory effect is to be expected. Food chain accumulations definitely do

Minhocas em uma Pastagem Arborizada na Região Noroeste do Estado do Paraná, Brasil Earthworms of a Silvopastoral System of Northwestern State of Paraná, Brazil

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Roberta Jardeveski

2011-03-01

condições microclimáticas sob suas copas.