Coherence features of the spin-aligned neutron-proton pair coupling scheme
Qi, C; Bäck, T; Cederwall, B; Johnson, A; Liotta, R J; Wyss, R
2012-01-01
The seniority scheme has been shown to be extremely useful for the classification of nuclear states in semi-magic nuclei. The neutron-proton ($np$) correlation breaks the seniority symmetry in a major way. As a result, the corresponding wave function is a mixture of many components with different seniority quantum numbers. In this contribution we show that the $np$ interaction may favor a new kind of coupling in $N=Z$ nuclei, i.e., the so-called isoscalar spin-aligned $np$ pair mode. Shell model calculations reveal that the ground and low-lying yrast states of the $N = Z$ nuclei $^{92}$Pd and $^{96}$Cd may mainly be built upon such spin-aligned $np$ pairs each carrying the maximum angular momentum $J = 9$ allowed by the shell $0g_{9/2}$ which is dominant in this nuclear region.
Scheme Dependence and Multiple Couplings
Jack, Ian
2016-01-01
For theories with multiple couplings the perturbative $\\beta$-functions for scalar, Yukawa couplings are expressible in terms of contributions corresponding to one particle irreducible graphs and also contributions which are one particle reducible depending on the anomalous dimension. Here we discuss redefinitions, or changes of scheme, which preserve this structure. The redefinitions allow for IPR contributions of a specific form, as is necessary to encompass the relation between MS and momentum subtraction renormalisation schemes. Many multiply 1PR terms in the transformed $\\beta$-function are generated but these can all be absorbed into antisymmetric contributions to the anomalous dimensions which are essentially arbitrary and can be discarded. As an illustration the results are applied to the scheme dependence of the anomalous dimension, which determines the $\\beta$-function, for ${\\cal N}=1$ supersymmetric scalar fermion theories in four dimensions up to four loops.
Alignment control network scheme design and measurement of HLS upgrade
Background: In order to open up the application field and improve the source, the Hefei Light Source (HLS) is taken a major upgrade. Purpose: The paper mainly introduces the way of building and measuring of alignment control network during the HLS upgrade. Methods: The global horizontal control network points' data are measured by total station. All control network points' 3D-measurement data are obtained by laser tracker and elevation data are got by N3 Level. The function of Unified Spatial Metrology Network (USMN) of SA software is used to make a three dimensional adjustment combining data from different devices. The concept of measurement uncertainty is used to describe the measurement quality of network points. In order to check the correctness of the adjustment result, the software of MAA was employed to make three-dimensional adjustment as well as plane adjustment done by SURVEY adding elevation adjustment by NASEW2003. Results: Through the actual measurement and data processing, the accuracy of actual measurement is 0.09 mm, better than the designed accuracy of 0.15 mm. Compared with the results adjustment by different software, the result of SA is demonstrated to be reliable. Conclusion: The result demonstrates that the designed scheme of alignment control network of HLS upgrade is reasonable and feasible. (authors)
Multistep shell model description of spin-aligned neutron–proton pair coupling
The recently proposed spin-aligned neutron–proton pair coupling scheme is studied within a non-orthogonal basis in term of the multistep shell model. This allows us to identify simultaneously the roles played by other configurations such as the normal pairing term. The model is applied to four-, six- and eight-hole N=Z nuclei below the core 100Sn.
A combined alignment and registration scheme of psoriasis lesion |images
Maletti, Gabriela Mariel; Ersbøll, Bjarne Kjær
2003-01-01
A two-stage registration scheme of psoriasis lesion patterns is proposed. In the first stage, global rotation and translation effects of assumed equally scaled psoriasis lesion patterns are removed. In the second stage, only local translation effects are removed. In both stages a novel algorithm...
Molecular alignment effect on the photoassociation process via a pump-dump scheme
The photoassociation processes via the pump-dump scheme for the heternuclear (Na + H → NaH) and the homonuclear (Na + Na → Na2) molecular systems are studied, respectively, using the time-dependent quantum wavepacket method. For both systems, the initial atom pair in the continuum of the ground electronic state (X1Σ+) is associated into the molecule in the bound states of the excited state (A1Σ+) by the pump pulse. Then driven by a time-delayed dumping pulse, the prepared excited-state molecule can be transferred to the bound states of the ground electronic state. It is found that the pump process can induce a superposition of the rovibrational levels |v, j〉 on the excited state, which can lead to the field-free alignment of the excited-state molecule. The molecular alignment can affect the dumping process by varying the effective coupling intensity between the two electronic states or by varying the population transfer pathways. As a result, the final population transferred to the bound states of the ground electronic state varies periodically with the delay time of the dumping pulse
Molecular alignment effect on the photoassociation process via a pump-dump scheme
Wang, Bin-Bin; Han, Yong-Chang, E-mail: ychan@dlut.edu.cn; Cong, Shu-Lin [School of Physics and Optoelectronic Technology, Dalian University of Technology, Dalian 116024 (China)
2015-09-07
The photoassociation processes via the pump-dump scheme for the heternuclear (Na + H → NaH) and the homonuclear (Na + Na → Na{sub 2}) molecular systems are studied, respectively, using the time-dependent quantum wavepacket method. For both systems, the initial atom pair in the continuum of the ground electronic state (X{sup 1}Σ{sup +}) is associated into the molecule in the bound states of the excited state (A{sup 1}Σ{sup +}) by the pump pulse. Then driven by a time-delayed dumping pulse, the prepared excited-state molecule can be transferred to the bound states of the ground electronic state. It is found that the pump process can induce a superposition of the rovibrational levels |v, j〉 on the excited state, which can lead to the field-free alignment of the excited-state molecule. The molecular alignment can affect the dumping process by varying the effective coupling intensity between the two electronic states or by varying the population transfer pathways. As a result, the final population transferred to the bound states of the ground electronic state varies periodically with the delay time of the dumping pulse.
Molecular alignment effect on the photoassociation process via a pump-dump scheme.
Wang, Bin-Bin; Han, Yong-Chang; Cong, Shu-Lin
2015-09-01
The photoassociation processes via the pump-dump scheme for the heternuclear (Na + H → NaH) and the homonuclear (Na + Na → Na2) molecular systems are studied, respectively, using the time-dependent quantum wavepacket method. For both systems, the initial atom pair in the continuum of the ground electronic state (X(1)Σ(+)) is associated into the molecule in the bound states of the excited state (A(1)Σ(+)) by the pump pulse. Then driven by a time-delayed dumping pulse, the prepared excited-state molecule can be transferred to the bound states of the ground electronic state. It is found that the pump process can induce a superposition of the rovibrational levels |v, j〉 on the excited state, which can lead to the field-free alignment of the excited-state molecule. The molecular alignment can affect the dumping process by varying the effective coupling intensity between the two electronic states or by varying the population transfer pathways. As a result, the final population transferred to the bound states of the ground electronic state varies periodically with the delay time of the dumping pulse. PMID:26342366
Mulder, Carlijn L.; Reusswig, Phil D.; Velazquez, Amador M.; Kim, Heekyung; Rotschild, Carmel; Baldo, Marc
2010-04-26
Luminescent solar concentrators (LSCs) use dye molecules embedded in a flat-plate waveguide to absorb solar radiation. Ideally, the dyes re-emit the absorbed light into waveguide modes that are coupled to solar cells. But some photons are always lost, re-emitted through the face of the LSC and coupled out of the waveguide. In this work, we improve the fundamental efficiency limit of an LSC by controlling the orientation of dye molecules using a liquid crystalline host. First, we present a theoretical model for the waveguide trapping efficiency as a function of dipole orientation. Next, we demonstrate an increase in the trapping efficiency from 66% for LSCs with no dye alignment to 81% for a LSC with vertical dye alignment. Finally, we show that the enhanced trapping efficiency is preserved for geometric gains up to 30, and demonstrate that an external diffuser can alleviate weak absorption in LSCs with vertically-aligned dyes.
Scheme variations of the QCD coupling and hadronic $\\tau$ decays
Boito, Diogo; Jamin, Matthias; Miravitllas, Ramon
2016-01-01
The Quantum Chromodynamics (QCD) coupling, $\\alpha_s$, is not a physical observable of the theory since it depends on conventions related to the renormalization procedure. We introduce a definition of the QCD coupling, denoted by $\\widehat\\alpha_s$, whose running is explicitly renormalization scheme invariant. The scheme dependence of the new coupling $\\widehat\\alpha_s$ is parameterized by a single parameter $C$, related to transformations of the QCD scale $\\Lambda$. It is demonstrated that a...
High-brightness fiber-coupling schemes for diode laser bars
Schreiber, Peter; Hoefer, Bernd; Dannberg, Peter; Zeitner, Uwe D.
2005-08-01
Fiber-coupling of high-brightness laser diode bars requires shaping and superposition of the images of the individual emitters on the fiber facet. Employment of micro-optical elements together with bulk-optical components enables the design and manufacturing of efficient coupling schemes with small form-factor. In this presentation we describe optical system design, manufacturing of micro-optical elements, system integration and characterization of two coupling schemes: The beam twister approach uses tilted cylindrical mirolens telescopes to rotate the images of the individual emitters by 90° with subsequent beam compression and focusing optics, while a skew ray coupling scheme applies an array of blazed diffractive elements in the pupil plane of a relay optics to superpose the images of the individual emitters. The optics design is based on raytracing procedures, taking into account diffractive effects, which could lower coupling efficiency. Micro-optical components are realized by polymer-on-glass replication of reflow lenses or grating structures manufactured by laser-lithography. System assembly is based on precise glueing with active alignment in the submicrometer range. We realized several optics schemes for coupling of high-power, high-brightness laser diode bars into fibers with 100µm core diameter. The systems are compared with each other with respect to achievable coupling efficiency, adjustment tolerances and pointing stability.
Alignment, reverse alignment, and wrong sign Yukawa couplings in two Higgs doublet models
Biswas, Ambalika; Lahiri, Amitabha
2016-06-01
We consider two Higgs doublet models with a softly broken U(1) symmetry, for various limiting values of the scalar mixing angles α and β . These correspond to the Standard Model Higgs particle being the lighter C P -even scalar (alignment) or the heavier C P -even scalar (reverse alignment), and also the limit in which some of the Yukawa couplings of this particle are the opposite sign of the vector boson couplings (wrong sign). In these limits we impose a criterion for naturalness by demanding that quadratic divergences cancel at one loop. We plot the allowed masses of the remaining physical scalars based on naturalness, stability, perturbative unitarity, and constraints coming from the ρ parameter. We also calculate the h →γ γ decay width in the wrong sign limit.
A novel fully automatic scheme for fiducial marker-based alignment in electron tomography.
Han, Renmin; Wang, Liansan; Liu, Zhiyong; Sun, Fei; Zhang, Fa
2015-12-01
Although the topic of fiducial marker-based alignment in electron tomography (ET) has been widely discussed for decades, alignment without human intervention remains a difficult problem. Specifically, the emergence of subtomogram averaging has increased the demand for batch processing during tomographic reconstruction; fully automatic fiducial marker-based alignment is the main technique in this process. However, the lack of an accurate method for detecting and tracking fiducial markers precludes fully automatic alignment. In this paper, we present a novel, fully automatic alignment scheme for ET. Our scheme has two main contributions: First, we present a series of algorithms to ensure a high recognition rate and precise localization during the detection of fiducial markers. Our proposed solution reduces fiducial marker detection to a sampling and classification problem and further introduces an algorithm to solve the parameter dependence of marker diameter and marker number. Second, we propose a novel algorithm to solve the tracking of fiducial markers by reducing the tracking problem to an incomplete point set registration problem. Because a global optimization of a point set registration occurs, the result of our tracking is independent of the initial image position in the tilt series, allowing for the robust tracking of fiducial markers without pre-alignment. The experimental results indicate that our method can achieve an accurate tracking, almost identical to the current best one in IMOD with half automatic scheme. Furthermore, our scheme is fully automatic, depends on fewer parameters (only requires a gross value of the marker diameter) and does not require any manual interaction, providing the possibility of automatic batch processing of electron tomographic reconstruction. PMID:26433028
Complete Synchronization in Coupled Chaotic HR Neurons with Symmetric Coupling Schemes
WANG Hai-Xia; LU Qi-Shao; WANG Qing-Yun
2005-01-01
@@ Chaos synchronization in an array of coupled chaotic neurons with symmetric coupling is investigated. A criterion for the stability of the synchronization manifold is deduced by transforming the variational equation of the coupled system into a block diagonal one, and the critical coupling strengths for synchronization in different coupled cases are given. As examples for illustration, the HR neurons with the open-ended (i.e. chain), ring, star and all-to-all(i.e. global) coupling schemes are considered. It is shown that the coupling scheme plays an important role in synchronization and information transmission of neurons.
Coupling Schemes for Multiphysics Reactor Simulation
Vijay Mahadeven; Jean Ragusa
2007-11-01
This report documents the progress of the student Vijay S. Mahadevan from the Nuclear Engineering Department of Texas A&M University over the summer of 2007 during his visit to the INL. The purpose of his visit was to investigate the physics-based preconditioned Jacobian-free Newton-Krylov method applied to physics relevant to nuclear reactor simulation. To this end he studied two test problems that represented reaction-diffusion and advection-reaction. These two test problems will provide the basis for future work in which neutron diffusion, nonlinear heat conduction, and a twophase flow model will be tightly coupled to provide an accurate model of a BWR core.
Rhythm Synchronization of Coupled Neurons with Temporal Coding Scheme
SHI Xia; LU Qi-Shao
2007-01-01
Encoding information by firing patterns is one of the basic neural functions, and synchronization is important collective behaviour of a group of coupled neurons. Taking account of two schemes for encoding information (that is, rate coding and temporal coding), rhythm synchronization of coupled neurons is studied. There are two types of rhythm synchronization of neurons: spike and burst synchronizations. Firstly, it is shown that the spike synchronization is equivalent to the phase synchronization for coupled neurons. Secondly, the similarity function of the slow variables of neurons, which have relevant to the bursting process, is proposed to judge the burst synchronization. It is also found that the burst synchronization can be achieved more easily than the spike synchronization, whatever the firing patterns of the neurons are. Hence the temporal encoding scheme, which is closely related to both the spike and burst synchronizations, is more comprehensive than the rate coding scheme in essence.
Self-aligned Coupled Waveguide Distributed Bragg Reflector Lasers
LIU Guoli; WANG Wei; ZHU Hongliang; ZHANG Jingyuan; HU Xiaohua; LU Yu; ZHANG Jing
2002-01-01
A novel self-aligned coupled waveguide (SACW) multi-quantum-well (MQW) distributed Bragg reflector (DBR) laser is proposed and demonstrated for the first time. By selectively removing the MQW layer and leaving the low SCH/SACW layer the Bragg grating is partially formed on this layer. By optimizing the thickness of the low SCH/SACW layer, a～80% coupling efficiency between the MQW gain region and the passive region are obtained. The typical threshold current of the SACW DBR laser is 39 mA, the slope efficiency can reach to 0.2 mW/mA and the output power is more than 20 mW with a more than 30dB side mode suppression ratio.
Scheme variations of the QCD coupling and hadronic $\\tau$ decays
Boito, Diogo; Miravitllas, Ramon
2016-01-01
The Quantum Chromodynamics (QCD) coupling, $\\alpha_s$, is not a physical observable of the theory since it depends on conventions related to the renormalization procedure. We introduce a definition of the QCD coupling, denoted by $\\widehat\\alpha_s$, whose running is explicitly renormalization scheme invariant. The scheme dependence of the new coupling $\\widehat\\alpha_s$ is parameterized by a single parameter $C$, related to transformations of the QCD scale $\\Lambda$. It is demonstrated that appropriate choices of $C$ can lead to substantial improvements in the perturbative prediction of physical observables. As phenomenological applications, we study $e^+e^-$ scattering and decays of the $\\tau$ lepton into hadrons, both being governed by the QCD Adler function.
A Novel Scheme for DVL-Aided SINS In-Motion Alignment Using UKF Techniques
Wenqi Wu
2013-01-01
Full Text Available In-motion alignment of Strapdown Inertial Navigation Systems (SINS without any geodetic-frame observations is one of the toughest challenges for Autonomous Underwater Vehicles (AUV. This paper presents a novel scheme for Doppler Velocity Log (DVL aided SINS alignment using Unscented Kalman Filter (UKF which allows large initial misalignments. With the proposed mechanism, a nonlinear SINS error model is presented and the measurement model is derived under the assumption that large misalignments may exist. Since a priori knowledge of the measurement noise covariance is of great importance to robustness of the UKF, the covariance-matching methods widely used in the Adaptive KF (AKF are extended for use in Adaptive UKF (AUKF. Experimental results show that the proposed DVL-aided alignment model is effective with any initial heading errors. The performances of the adaptive filtering methods are evaluated with regards to their parameter estimation stability. Furthermore, it is clearly shown that the measurement noise covariance can be estimated reliably by the adaptive UKF methods and hence improve the performance of the alignment.
Efficient Z-scheme charge separation in novel vertically aligned ZnO/CdSSe nanotrees
Li, Zhengxin; Nieto-Pescador, Jesus; Carson, Alexander J.; Blake, Jolie C.; Gundlach, Lars
2016-04-01
A new tree-like ZnO/CdSSe nanocomposite with CdSSe branches grown on ZnO nanowires prepared via a two-step chemical vapor deposition is presented. The nanotrees (NTs) are vertically aligned on a substrate. The CdSSe branches result in strong visible light absorption and form a type-II heterojunction with the ZnO stem that facilitates efficient electron transfer. A combination of photoluminescence spectroscopy and lifetime measurements indicates that the NTs are promising materials for applications that benefit from a Z-scheme charge transfer mechanism. Vertically aligned branched ZnO nanowires can provide direct electron transport pathways to substrates and allow for efficient charge separation. These advantages of nanoscale hierarchical heterostructures make ZnO/CdSSe NTs a promising semiconductor material for solar cells, and other opto-electronic devices.
Efficient Z-scheme charge separation in novel vertically aligned ZnO/CdSSe nanotrees.
Li, Zhengxin; Nieto-Pescador, Jesus; Carson, Alexander J; Blake, Jolie C; Gundlach, Lars
2016-04-01
A new tree-like ZnO/CdSSe nanocomposite with CdSSe branches grown on ZnO nanowires prepared via a two-step chemical vapor deposition is presented. The nanotrees (NTs) are vertically aligned on a substrate. The CdSSe branches result in strong visible light absorption and form a type-II heterojunction with the ZnO stem that facilitates efficient electron transfer. A combination of photoluminescence spectroscopy and lifetime measurements indicates that the NTs are promising materials for applications that benefit from a Z-scheme charge transfer mechanism. Vertically aligned branched ZnO nanowires can provide direct electron transport pathways to substrates and allow for efficient charge separation. These advantages of nanoscale hierarchical heterostructures make ZnO/CdSSe NTs a promising semiconductor material for solar cells, and other opto-electronic devices. PMID:26894995
The extreme ultraviolet imager of solar orbiter: optical design and alignment scheme
Halain, J.-P.; Mazzoli, A.; Meining, S.; Rochus, P.; Renotte, E.; Auchère, F.; Schühle, U.; Delmotte, F.; Dumesnil, C.; Philippon, A.; Mercier, R.; Hermans, A.
2015-09-01
The Extreme Ultraviolet Imager (EUI) is one of the remote sensing instruments on-board the Solar Orbiter mission. It will provide dual-band full-Sun images of the solar corona in the extreme ultraviolet (17.1 nm and 30.4 nm), and high resolution images of the solar disk in both extreme ultraviolet (17.1 nm) and vacuum ultraviolet (Lyman-alpha 121.6 nm). The EUI optical design takes heritage of previous similar instruments. The Full Sun Imager (FSI) channel is a single mirror Herschel design telescope. The two High Resolution Imager (HRI) channels are based on a two-mirror optical refractive scheme, one Ritchey-Chretien and one Gregory optical design for the EUV and the Lyman-alpha channels, respectively. The spectral performances of the EUI channels are obtained thanks to dedicated mirror multilayer coatings and specific band-pass filters. The FSI channel uses a dual-band mirror coating combined with aluminum and zirconium band-pass filters. The HRI channels use optimized band-pass selection mirror coatings combined with aluminum band-pass filters and narrow band interference filters for Lyman-alpha. The optical performances result from accurate mirror manufacturing tolerances and from a two-step alignment procedure. The primary mirrors are first co-aligned. The HRI secondary mirrors and focal planes positions are then adjusted to have an optimum interferometric cavity in each of these two channels. For that purpose a dedicated alignment test setup has been prepared, composed of a dummy focal plane assembly representing the detector position. Before the alignment on the flight optical bench, the overall alignment method has been validated on the Structural and Thermal Model, on a dummy bench using flight spare optics, then on the Qualification Model to be used for the system verification test and qualifications.
Burnup span sensitivity analysis of different burnup coupling schemes
Highlights: ► The objective of this work is the burnup span sensitivity analysis of different coupling schemes. ► Three kinds of schemes have been implemented in a new MCNP–ORIGEN linkage program. ► Two kinds of schemes are based predictor–corrector technique and the third is based on Euler explicit method. ► The analysis showed that the predictor–corrector approach better accounts for nonlinear behavior of burnup. ► It is sufficiently good to use the Euler method at small spans but for large spans use of second order scheme is mandatory. - Abstract: The analysis of core composition changes is complicated by the fact that the time and spatial variations in isotopic composition depend on the neutron flux distribution and vice versa. Fortunately, changes in core composition occur relatively slowly and hence the burnup analysis can be performed by dividing the burnup period into some burnup spans and assuming that the averaged flux and cross sections are constant during each burn up span. The burnup span sensitivity analysis attempts to find how much the burnup spans could be increased without any significant change in results. This goal has been achieved by developing a new MCNP–ORIGEN linkage program named MOBC (MCNP–ORIGEN Burnup Calculation). Three kinds of coupling scheme have been implemented in MOBC. Two of these are based on second order predictor–corrector technique and enable us to choose larger time steps, whilst the third one is based on Euler explicit first order method and is faster than the other two. The validity of the developed program has been evaluated by the code vs. code comparison technique. Two different types of codes are employed. The first one is based on deterministic two dimensional transport method, like CASMO-4 and HELIOS codes, and the second one is based on Monte Carlo method, like MCODE code. Only one coupling technique is employed in each of these state of the art codes, while the MOBC excels in its ability to
A Downlink and Uplink Alignment Scheme for Power Saving in IEEE 802.16 Protocol
Jenhui Chen
2014-01-01
Full Text Available This study shows the problem of power saving mechanism (PSM that sleep intervals of uplink (UL connections do not synchronize with sleep intervals of downlink (DL connections. That is, the energy of a mobile station (MS is not really saved if the DL connections are in the sleep mode while the UL connections are in normal mode, and vice versa. To avoid the asynchronism of power saving (PS between UL and DL connections, we invent a mechanism of DL connections regulating UL connections, called DL and UL Alignment (DUAL scheme, to improve the energy efficiency for PS. Considering that the buffer size of MS is limited, DUAL uses the mean packet arrival rate of UL λu and a relatively safe threshold of buffer size QT as the parameters to estimate the maximum allowable waiting time to align the UL with the DL connections. To analyze the performance of DUAL, a system model of PS is proposed to evaluate the performance of DUAL under different conditions. The correctness of performance analysis of DUAL is validated by using simulation with realistic parameters. Numerical experiments show that DUAL improves the energy conservation significantly when UL traffic is greater than DL traffic.
Magnetosphere-Ionosphere Coupling and Field-Aligned Currents
Oliveira, D M
2015-01-01
It is presented in this paper a review of one of several interactions between the magnetosphere and the ionosphere through the field-aligned currents (FACs). Some characteristics and physical implications of the currents flowing in a plane perpendicular to the magnetic field at high latitudes are discussed. The behavior of this system as an electric circuit is explained, where momentum and energy are transferred via Poynting flux from the magnetosphere into the ionosphere.
A high order energy preserving scheme for the strongly coupled nonlinear Schrödinger system
A high order energy preserving scheme for a strongly coupled nonlinear Schrödinger system is proposed by using the average vector field method. The high order energy preserving scheme is applied to simulate the soliton evolution of the strongly coupled Schrödinger system. Numerical results show that the high order energy preserving scheme can well simulate the soliton evolution, moreover, it preserves the discrete energy of the strongly coupled nonlinear Schrödinger system exactly. (general)
All Possible Coupling Schemes in XY Spin Chains for Perfect State Transfer
Wang, Yaoxiong; Rabitz, Herschel
2011-01-01
We investigate quantum state transfer in XY spin chains and propose a recursive procedure to construct the nonuniform couplings of these chains with arbitrary length to achieve perfect state transfer(PST). We show that this method is capable of finding all possible coupling schemes for PST. These schemes, without external control fields, only involve preengineered couplings but not dynamical control of them, so they can be simply realized experimentally. The analytical solutions provide all information for coupling design.
Vehicle to wireless power transfer coupling coil alignment sensor
Miller, John M.; Chambon, Paul H.; Jones, Perry T.; White, Clifford P.
2016-02-16
A non-contacting position sensing apparatus includes at least one vehicle-mounted receiver coil that is configured to detect a net flux null when the vehicle is optimally aligned relative to the primary coil in the charging device. Each of the at least one vehicle-mounted receiver coil includes a clockwise winding loop and a counterclockwise winding loop that are substantially symmetrically configured and serially connected to each other. When the non-contacting position sensing apparatus is located directly above the primary coil of the charging device, the electromotive forces from the clockwise winding loop and the counterclockwise region cancel out to provide a zero electromotive force, i.e., a zero voltage reading across the coil that includes the clockwise winding loop and the counterclockwise winding loop.
Description of a stable scheme for steady-state coupled Monte Carlo-thermal-hydraulic calculations
Dufek, Jan; Eduard Hoogenboom, J.
2014-01-01
We provide a detailed description of a numerically stable and efficient coupling scheme for steady-state Monte Carlo neutronic calculations with thermal-hydraulic feedback. While we have previously derived and published the stochastic approximation based method for coupling the Monte Carlo criticality and thermal-hydraulic calculations, its possible implementation has not been described in a step-by-step manner. As the simple description of the coupling scheme was repeatedly requested from us...
A Three-Pole Substrate Integrated Waveguide Bandpass Filter Using New Coupling Scheme
Guan, X.; Yuan, Y.; Liu, H; Huang, W.
2015-01-01
A novel three-pole substrate integrated waveguide (SIW) bandpass filter (BPF) using new coupling scheme is proposed in this paper. Two high order degenerate modes (TE102 and TE201) of a square SIW cavity and a dominant mode (TE101) of a rectangular SIW cavity are coupled to form a three-pole SIW BPF. The coupling scheme of the structure is given and analyzed. Due to the coupling between two cavities, as well as the coupling between source and load, three transmission zeros are created in the...
A Cell-Centered Multiphase ALE Scheme With Structural Coupling
Dunn, Timothy Alan [Univ. of California, Davis, CA (United States)
2012-04-16
A novel computational scheme has been developed for simulating compressible multiphase flows interacting with solid structures. The multiphase fluid is computed using a Godunov-type finite-volume method. This has been extended to allow computations on moving meshes using a direct arbitrary-Eulerian- Lagrangian (ALE) scheme. The method has been implemented within a Lagrangian hydrocode, which allows modeling the interaction with Lagrangian structural regions. Although the above scheme is general enough for use on many applications, the ultimate goal of the research is the simulation of heterogeneous energetic material, such as explosives or propellants. The method is powerful enough for application to all stages of the problem, including the initial burning of the material, the propagation of blast waves, and interaction with surrounding structures. The method has been tested on a number of canonical multiphase tests as well as fluid-structure interaction problems.
Atomic electronic states: the L-S and j-j coupling schemes and their correlation
Li, Wai-Kee
2014-01-01
In the first part of this paper, we review the assumption of the L-S coupling scheme, with which we derive the electronic states arising from a given atomic configuration. Then, with the aid of the spectral data of Group 15 elements, it becomes clear that the assumption of the L-S coupling scheme is no longer valid as we go farther and farther down the Periodic Table. In the second part, we introduce the j-j coupling scheme, which is seldom covered in standard inorganic chemistry texts, and contrast the assumptions of the two schemes. Next, we use two worked examples to demonstrate the derivation of electronic states with the j-j coupling scheme. Finally, the correlation between the states derived by L-S and j-j schemes is pictorially shown. It is believed a student, by also studying j-j coupling schemes (by no means a difficult task) along with the L-S scheme, will gain a better understanding of the concept of atomic electronic states.
coupling factor classification schemes for common cause failure analysis
Given the existence of the root cause as a mechanism of a transition of state from available to that of failed or functionally unavailable, the second concept of importance is linking or coupling mechanism, which is what leads to multiple equipment failure. A common cause failure could occur as a result of an event at the plant resulting from a cause in the component compartment. The cause is the root cause of failure of the two components. The coupling factor is the fact that both components are located in the same compartment. Coupling factor is a characteristic of a group of components or piece arts that identifies them as susceptible to the same causal mechanisms of failure. Such factors include similarity in design, location, environment, mission, and operational, maintenance, and test procedures. The most important purpose of the proposed coupling factor classification system is providing a tool for evaluating plant defenses against multiple failures. The hierarchical structure of coding system proposed for coupling factors is particularly useful in event classification since the level of detail in available information can vary from event to event. The events will be sorted based on coupling factors coding system in two categories, operating and standby systems. This approach allows the analyst to evaluate possible defense and determine which class of coupling factors is pertinent to the plant under consideration
Silva, Filipe da, E-mail: tanatos@ipfn.ist.utl.pt [Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisboa (Portugal); Pinto, Martin Campos, E-mail: campos@ann.jussieu.fr [CNRS, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Sorbonne Universités, UPMC Univ Paris 06, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Després, Bruno, E-mail: despres@ann.jussieu.fr [Sorbonne Universités, UPMC Univ Paris 06, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); CNRS, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); Heuraux, Stéphane, E-mail: stephane.heuraux@univ-lorraine.fr [Institut Jean Lamour, UMR 7198, CNRS – University Lorraine, Vandoeuvre (France)
2015-08-15
This work analyzes the stability of the Yee scheme for non-stationary Maxwell's equations coupled with a linear current model with density fluctuations. We show that the usual procedure may yield unstable scheme for physical situations that correspond to strongly magnetized plasmas in X-mode (TE) polarization. We propose to use first order clustered discretization of the vectorial product that gives back a stable coupling. We validate the schemes on some test cases representative of direct numerical simulations of X-mode in a magnetic fusion plasma including turbulence.
This work analyzes the stability of the Yee scheme for non-stationary Maxwell's equations coupled with a linear current model with density fluctuations. We show that the usual procedure may yield unstable scheme for physical situations that correspond to strongly magnetized plasmas in X-mode (TE) polarization. We propose to use first order clustered discretization of the vectorial product that gives back a stable coupling. We validate the schemes on some test cases representative of direct numerical simulations of X-mode in a magnetic fusion plasma including turbulence
Fourth-order compact schemes for the numerical simulation of coupled Burgers' equation
Bhatt, H. P.; Khaliq, A. Q. M.
2016-03-01
This paper introduces two new modified fourth-order exponential time differencing Runge-Kutta (ETDRK) schemes in combination with a global fourth-order compact finite difference scheme (in space) for direct integration of nonlinear coupled viscous Burgers' equations in their original form without using any transformations or linearization techniques. One scheme is a modification of the Cox and Matthews ETDRK4 scheme based on (1 , 3) -Padé approximation and other is a modification of Krogstad's ETDRK4-B scheme based on (2 , 2) -Padé approximation. Efficient versions of the proposed schemes are obtained by using a partial fraction splitting technique of rational functions. The stability properties of the proposed schemes are studied by plotting the stability regions, which provide an explanation of their behavior for dispersive and dissipative problems. The order of convergence of the schemes is examined empirically and found that the modification of ETDRK4 converges with the expected rate even if the initial data are nonsmooth. On the other hand, modification of ETDRK4-B suffers with order reduction if the initial data are nonsmooth. Several numerical experiments are carried out in order to demonstrate the performance and adaptability of the proposed schemes. The numerical results indicate that the proposed schemes provide better accuracy than other schemes available in the literature. Moreover, the results show that the modification of ETDRK4 is reliable and yields more accurate results than modification of ETDRK4-B, while solving problems with nonsmooth data or with high Reynolds number.
Improved computing scheme for measuring eye alignment with Purkinje images I and IV.
Barry, J C; Backes, A; Pongs, U M; Kirschkamp, T; Dunne, M C
1997-09-01
This study introduces an improved computing scheme for determining eye rotation from Purkinje images I and IV. The original computing scheme systematically underestimated eye rotation. Paraxial raytracing calculations revealed that this error resulted from failure to account for the fact that Purkinje images I and IV fall at different distances behind the cornea. The error could be overcome with a correction factor derived from paraxial raytracing calculations. A series of experiments were carried out to test the validity of this correlation factor, involving exact raytracing calculations as well as measurements on physical model eyes and human eyes. The influence on the correction factor of ocular surface asphericity, accommodation, age and ocular component variations were examined. The new method was also compared to Hirschberg's technique, which makes use of Purkinje image I alone, as a means of screening for strabismus. PMID:9390370
A Three-Pole Substrate Integrated Waveguide Bandpass Filter Using New Coupling Scheme
X. Guan
2015-09-01
Full Text Available A novel three-pole substrate integrated waveguide (SIW bandpass filter (BPF using new coupling scheme is proposed in this paper. Two high order degenerate modes (TE102 and TE201 of a square SIW cavity and a dominant mode (TE101 of a rectangular SIW cavity are coupled to form a three-pole SIW BPF. The coupling scheme of the structure is given and analyzed. Due to the coupling between two cavities, as well as the coupling between source and load, three transmission zeros are created in the stopband of the filter. The proposed three-pole SIW BPF is designed and fabricated. Good agreement between simulated and measured results verifies the validity of the design methodology well.
Pair-eigenstates and mutual alignment of coupled molecular rotors in a magnetic field.
Sharma, Ketan; Friedrich, Bretislav
2016-05-11
We examine the rotational states of a pair of polar (2)Σ molecules subject to a uniform magnetic field. The electric dipole-dipole interaction between the molecules creates entangled pair-eigenstates of two types. In one type, the Zeeman interaction between the inherently paramagnetic molecules and the magnetic field destroys the entanglement of the pair-eigenstates, whereas in the other type it does not. The pair-eigenstates exhibit numerous intersections, which become avoided for pair-eigenstates comprised of individual states that meet the selection rules ΔJi = 0, ± 1, ΔNi = 2n (n = 0, ±1, ±2,…), and ΔMi = 0, ± 1 imposed by the electric dipole-dipole operator. Here Ji, Ni and Mi are the total, rotational and projection angular momentum quantum numbers of molecules i = 1, 2 in the absence of the electric dipole-dipole interaction. We evaluate the mutual alignment of the pair-eigenstates and find it to be independent of the magnetic field, except for states that undergo avoided crossings, in which case the alignment of the interacting states is interchanged at the magnetic field corresponding to the crossing point. We present an analytic model which provides ready estimates of the pairwise alignment cosine that characterises the mutual alignment of the pair of coupled rotors. PMID:27126576
Numerical solutions of coupled Burgers’ equations by an implicit finite-difference scheme
Srivastava, Vineet K.; Sarita Singh; Mukesh K. Awasthi
2013-01-01
In this paper, an implicit exponential finite-difference scheme (Expo FDM) has been proposed for solving two dimensional nonlinear coupled viscous Burgers’ equations (VBEs) with appropriate initial and boundary conditions. The accuracy of the method has been illustrated by taking two numerical examples. Results are compared with exact solution and those already available in the literature by finding the L1, L2, L∞ and ER errors. Excellent numerical results indicate that the proposed scheme is...
El-Amin, Mohamed
2012-01-01
The problem of coupled structural deformation with two-phase flow in porous media is solved numerically using cellcentered finite difference (CCFD) method. In order to solve the system of governed partial differential equations, the implicit pressure explicit saturation (IMPES) scheme that governs flow equations is combined with the the implicit displacement scheme. The combined scheme may be called IMplicit Pressure-Displacement Explicit Saturation (IMPDES). The pressure distribution for each cell along the entire domain is given by the implicit difference equation. Also, the deformation equations are discretized implicitly. Using the obtained pressure, velocity is evaluated explicitly, while, using the upwind scheme, the saturation is obtained explicitly. Moreover, the stability analysis of the present scheme has been introduced and the stability condition is determined.
Critical analysis of fragment-orbital DFT schemes for the calculation of electronic coupling values
Schober, Christoph; Reuter, Karsten; Oberhofer, Harald, E-mail: harald.oberhofer@ch.tum.de [Chair for Theoretical Chemistry, Technische Universität München, Lichtenbergstr. 4, D-85747 Garching (Germany)
2016-02-07
We present a critical analysis of the popular fragment-orbital density-functional theory (FO-DFT) scheme for the calculation of electronic coupling values. We discuss the characteristics of different possible formulations or “flavors” of the scheme which differ by the number of electrons in the calculation of the fragments and the construction of the Hamiltonian. In addition to two previously described variants based on neutral fragments, we present a third version taking a different route to the approximate diabatic state by explicitly considering charged fragments. In applying these FO-DFT flavors to the two molecular test sets HAB7 (electron transfer) and HAB11 (hole transfer), we find that our new scheme gives improved electronic couplings for HAB7 (−6.2% decrease in mean relative signed error) and greatly improved electronic couplings for HAB11 (−15.3% decrease in mean relative signed error). A systematic investigation of the influence of exact exchange on the electronic coupling values shows that the use of hybrid functionals in FO-DFT calculations improves the electronic couplings, giving values close to or even better than more sophisticated constrained DFT calculations. Comparing the accuracy and computational cost of each variant, we devise simple rules to choose the best possible flavor depending on the task. For accuracy, our new scheme with charged-fragment calculations performs best, while numerically more efficient at reasonable accuracy is the variant with neutral fragments.
Critical analysis of fragment-orbital DFT schemes for the calculation of electronic coupling values
We present a critical analysis of the popular fragment-orbital density-functional theory (FO-DFT) scheme for the calculation of electronic coupling values. We discuss the characteristics of different possible formulations or “flavors” of the scheme which differ by the number of electrons in the calculation of the fragments and the construction of the Hamiltonian. In addition to two previously described variants based on neutral fragments, we present a third version taking a different route to the approximate diabatic state by explicitly considering charged fragments. In applying these FO-DFT flavors to the two molecular test sets HAB7 (electron transfer) and HAB11 (hole transfer), we find that our new scheme gives improved electronic couplings for HAB7 (−6.2% decrease in mean relative signed error) and greatly improved electronic couplings for HAB11 (−15.3% decrease in mean relative signed error). A systematic investigation of the influence of exact exchange on the electronic coupling values shows that the use of hybrid functionals in FO-DFT calculations improves the electronic couplings, giving values close to or even better than more sophisticated constrained DFT calculations. Comparing the accuracy and computational cost of each variant, we devise simple rules to choose the best possible flavor depending on the task. For accuracy, our new scheme with charged-fragment calculations performs best, while numerically more efficient at reasonable accuracy is the variant with neutral fragments
Independent alignment of RNA for dynamic studies using residual dipolar couplings
Molecular motion and dynamics play an essential role in the biological function of many RNAs. An important source of information on biomolecular motion can be found in residual dipolar couplings which contain dynamics information over the entire ms-ps timescale. However, these methods are not fully applicable to RNA because nucleic acid molecules tend to align in a highly collinear manner in different alignment media. As a consequence, information on dynamics that can be obtained with this method is limited. In order to overcome this limitation, we have generated a chimeric RNA containing both the wild type TAR RNA, the target of our investigation of dynamics, as well as the binding site for U1A protein. When U1A protein was bound to the portion of the chimeric RNA containing its binding site, we obtained independent alignment of TAR by exploiting the physical chemical characteristics of this protein. This technique can allow the extraction of new information on RNA dynamics, which is particularly important for time scales not covered by relaxation methods where important RNA motions occur.
Bukač, M.
2016-05-01
We model the interaction between an incompressible, viscous fluid, thin elastic structure and a poroelastic material. The poroelastic material is modeled using the Biot's equations of dynamic poroelasticity. The fluid, elastic structure and the poroelastic material are fully coupled, giving rise to a nonlinear, moving boundary problem with novel energy estimates. We present a modular, loosely coupled scheme where the original problem is split into the fluid sub-problem, elastic structure sub-problem and poroelasticity sub-problem. An energy estimate associated with the stability of the scheme is derived in the case where one of the coupling parameters, β, is equal to zero. We present numerical tests where we investigate the effects of the material properties of the poroelastic medium on the fluid flow. Our findings indicate that the flow patterns highly depend on the storativity of the poroelastic material and cannot be captured by considering fluid-structure interaction only.
The DSUBm approximation scheme for the coupled cluster method and applications to quantum magnets
R.F. Bishop
2009-01-01
Full Text Available A new approximate scheme, DSUBm, is described for the coupled cluster method. We apply it to two well-studied (spin-1/2 Heisenberg antiferromagnet spin-lattice models, namely: the XXZ and the XY models on the square lattice in two dimensions. Results are obtained in each case for the ground-state energy, the sublattice magnetization and the quantum critical point. They are in good agreement with those from such alternative methods as spin-wave theory, series expansions, exact diagonalization techniques, quantum Monte Carlo methods and those from the CCM using the LSUBm scheme.
A Self-synchronizing Stream Encryption Scheme Based on One-Dimensional Coupled Map Lattices
MA Hui; ZHU Kai-En; CHEN Tian-Lun
2007-01-01
We present a self-synchronizing stream encryption scheme based on one-dimensional coupled map lattices which is introduced as a model with the essential features of spatiotemporal chaos,and of great complexity and diffusion capability of the little disturbance in the initial condition.To evaluate the scheme,a series of statistical tests are employed,and the results show good random-look nature of the ciphertext.Furthermore,we apply our algorithm to encrypt a grey-scale image to show the key sensitivity.
Non-conforming curved finite element schemes for time-dependent elastic-acoustic coupled problems
Rodríguez-Rozas, Ángel; Diaz, Julien
2016-01-01
High-order numerical methods for solving time-dependent acoustic-elastic coupled problems are introduced. These methods, based on Finite Element techniques, allow for a flexible coupling between the fluid and the solid domain by using non-conforming meshes and curved elements. Since characteristic waves travel at different speeds through different media, specific levels of granularity for the mesh discretization are required on each domain, making impractical a possible conforming coupling in between. Advantageously, physical domains may be independently discretized in our framework due to the non-conforming feature. Consequently, an important increase in computational efficiency may be achieved compared to other implementations based on conforming techniques, namely by reducing the total number of degrees of freedom. Differently from other non-conforming approaches proposed so far, our technique is relatively simpler and requires only a geometrical adjustment at the coupling interface at a preprocessing stage, so that no extra computations are necessary during the time evolution of the simulation. On the other hand, as an advantage of using curvilinear elements, the geometry of the coupling interface between the two media of interest is faithfully represented up to the order of the scheme used. In other words, higher order schemes are in consonance with higher order approximations of the geometry. Concerning the time discretization, we analyze both explicit and implicit schemes. These schemes are energy conserving and, for the explicit case, the stability is guaranteed by a CFL condition. In order to illustrate the accuracy and convergence of these methods, a set of representative numerical tests are presented.
Bishop, R. F.; Li, P. H. Y.
2011-04-01
An approximation hierarchy, called the lattice-path-based subsystem (LPSUBm) approximation scheme, is described for the coupled-cluster method (CCM). It is applicable to systems defined on a regular spatial lattice. We then apply it to two well-studied prototypical (spin-(1)/(2) Heisenberg antiferromagnetic) spin-lattice models, namely, the XXZ and the XY models on the square lattice in two dimensions. Results are obtained in each case for the ground-state energy, the ground-state sublattice magnetization, and the quantum critical point. They are all in good agreement with those from such alternative methods as spin-wave theory, series expansions, quantum Monte Carlo methods, and the CCM using the alternative lattice-animal-based subsystem (LSUBm) and the distance-based subsystem (DSUBm) schemes. Each of the three CCM schemes (LSUBm, DSUBm, and LPSUBm) for use with systems defined on a regular spatial lattice is shown to have its own advantages in particular applications.
An approximation hierarchy, called the lattice-path-based subsystem (LPSUBm) approximation scheme, is described for the coupled-cluster method (CCM). It is applicable to systems defined on a regular spatial lattice. We then apply it to two well-studied prototypical (spin-(1/2) Heisenberg antiferromagnetic) spin-lattice models, namely, the XXZ and the XY models on the square lattice in two dimensions. Results are obtained in each case for the ground-state energy, the ground-state sublattice magnetization, and the quantum critical point. They are all in good agreement with those from such alternative methods as spin-wave theory, series expansions, quantum Monte Carlo methods, and the CCM using the alternative lattice-animal-based subsystem (LSUBm) and the distance-based subsystem (DSUBm) schemes. Each of the three CCM schemes (LSUBm, DSUBm, and LPSUBm) for use with systems defined on a regular spatial lattice is shown to have its own advantages in particular applications.
An Importance Sampling Scheme on Dual Factor Graphs. II. Models with Strong Couplings
Molkaraie, Mehdi
2014-01-01
We consider the problem of estimating the partition function of the two-dimensional ferromagnetic Ising model in an external magnetic field. The estimation is done via importance sampling in the dual of the Forney factor graph representing the model. We present importance sampling schemes that can efficiently compute an estimate of the partition function in a wide range of model parameters. Emphasis is on models in which a subset of the coupling parameters is strong.
A Systematic Search for New Coupling Schemes of Cross-Coupled Resonator Bandpass Filters
A. Lamecki
2014-09-01
Full Text Available In this paper, a systematic approach to an extensive search for topologies of cross-coupled filters with generalized Chebyshev response is presented. The technique applies graph theory to find unique, nonisomorphic filter configurations, and tests whether a specific frequency response can be realized in a given set of topologies. The results of the search are then stored in a database of possible filter configurations.
Hollinger, R.; Bargsten, C.; Shlyaptsev, V.; Keiss, D.; Townsend, A.; Rockwood, A.; Wang, Y.; Wang, S.; Rocca, J. J.; Pukhov, A.; Kaymak, V.; London, R.; Tommasini, R.
2015-11-01
Recent experiments at Colorado State University have demonstrated volumetric heating of near solid density plasmas to multi-keV temperatures by intense high contrast femtosecond laser irradiation of vertically aligned nanostructures. A key parameter is the time for the heated nanowires to expand and fill the inter-wire gaps with a super-critical density plasma. After this time the laser light can no longer penetrate deep into the array, effectively terminating volumetric heating. We have gained information on the gap closure time for arrays with different wire spacing by monitoring the intensity of He-like lines from arrays of nickel nanowires while varying the laser pulse width from 50 fs to 250 fs. Experiments conducted at constant laser energy show that He-like α line emission from arrays of 80 nm diameter nanowires separated by 205 nm is observed for pulse widths of 200 fs. It is possible to find an optimal wire separation to match the pulse width of the driving laser. The results are relevant to scaling the scheme to high energy laser facilities that are characterized by longer pulses. Work supported by the Office of Fusion Energy Science of the US Dept of Energy, and the DTRA. A.P was supported by DFG project TR18, and R.L. and R.T. by LLNL Contract No. DE-AC52-07NA27344.
Narski Jacek; Negulescu Claudia; Maldarella Dario; Degond Pierre; Deluzet Fabrice; Parisot Martin
2011-01-01
International audience In this paper a strategy is investigated for the spatial coupling of an asymptotic preserving scheme with the asymptotic limit model, associated to a singularly perturbed, highly anisotropic, ellip-tic problem. This coupling strategy appears to be very advantageous as compared with the numerical discretization of the initial singular perturbation model or the purely asymptotic preserving scheme introduced in previous works [3, 5]. The model problem addressed in this ...
Variational approach to low-frequency kinetic-MHD in the current coupling scheme
Burby, J W
2016-01-01
Hybrid kinetic-MHD models describe the interaction of an MHD bulk fluid with an ensemble of hot particles, which is described by a kinetic equation. When the Vlasov description is adopted for the energetic particles, different Vlasov-MHD models have been shown to lack an exact energy balance, which was recently recovered by the introduction of non-inertial force terms in the kinetic equation. These force terms arise from fundamental approaches based on Hamiltonian and variational methods. In this work we apply Hamilton's variational principle to formulate new current-coupling kinetic-MHD models in the low-frequency approximation (i.e. large Larmor frequency limit). More particularly, we formulate current-coupling hybrid schemes, in which energetic particle dynamics are expressed in either guiding-center or gyrocenter coordinates.
Flux-torque cross-coupling analysis of FOC schemes: Novel perturbation rejection characteristics.
Amezquita-Brooks, Luis; Liceaga-Castro, Eduardo; Liceaga-Castro, Jesús; Ugalde-Loo, Carlos E
2015-09-01
Field oriented control (FOC) is one of the most successful control schemes for electrical machines. In this article new properties of FOC schemes for induction motors (IMs) are revealed by studying the cross-coupling of the flux-torque subsystem. Through the use of frequency-based multivariable tools, it is shown that FOC has intrinsic stator currents disturbance rejection properties due to the existence of a transmission zero in the flux-torque subsystem. These properties can be exploited in order to select appropriate feedback loop configurations. One of the major drawbacks of FOC schemes is their high sensitivity to slip angular velocity perturbations. These perturbations are related to variations of the rotor time constant, which are known to be problematic for IM control. In this regard, the effect that slip angular velocity perturbations have over the newly found perturbation rejection properties is also studied. In particular, although perturbation rejection is maintained, deviations to the equilibrium point are induced; this introduces difficulties for simultaneous flux and torque control. The existence of equilibrium point issues when flux and torque are simultaneously controlled is documented for the first time in this article. PMID:26187346
马田田; 韦昌富; 陈盼; 魏厚振
2014-01-01
A constitutive model of unsaturated soils with coupling capillary hystere-sis and skeleton deformation is developed and implemented in a fully coupled transient hydro-mechanical finite-element model (computer code U-DYSAC2). The obtained re-sults are compared with experimental results, showing that the proposed constitutive model can simulate the main mechanical and hydraulic behavior of unsaturated soils in a unified framework. The non-linearity of the soil-water characteristic relation is treated in a similar way of elastoplasticity. Two constitutive relations are integrated by an implicit return-mapping scheme similar to that developed for saturated soils. A consistent tan-gential modulus is derived to preserve the asymptotic rate of the quadratic convergence of Newton’s iteration. Combined with the integration of the constitutive model, a complete finite-element formulation of coupling hydro-mechanical problems for unsaturated soils is presented. A number of practical problems with different given initial and boundary conditions are analyzed to illustrate the performance and capabilities of the finite-element model.
Scalar correlator, Higgs decay into quarks, and scheme variations of the QCD coupling
Jamin, Matthias
2016-01-01
In this work, the perturbative QCD series of the scalar correlation function $\\Psi(s)$ is investigated. Besides ${\\rm Im}\\Psi(s)$, which is relevant for Higgs decay into quarks, two other physical correlators, $\\Psi^{''}(s)$ and $D^L(s)$, have been employed in QCD applications like quark mass determinations or hadronic $\\tau$ decays. $D^L(s)$ suffers from large higher-order corrections and, by resorting to the large-$\\beta_0$ approximation, it is shown that this is related to a spurious renormalon ambiguity at $u=1$. Hence, this correlator should be avoided in phenomenological analyses. Moreover, it turns out advantageous to express the quark mass factor, introduced to make the scalar current renormalisation group invariant, in terms of the renormalisation invariant quark mass $\\widehat m_q$. To further study the behaviour of the perturbative expansion, we introduce a QCD coupling $\\widehat\\alpha_s$, whose running is explicitly renormalisation scheme independent. The scheme dependence of $\\widehat\\alpha_s$ is...
Dufek, Jan; Anglart, Henryk
2013-01-01
Numerically stable Monte Carlo burnup calculations of nuclear fuel cycles are now possible with the previously derived Stochastic Implicit Euler method based coupling scheme. In this paper, we show that this scheme can be easily extended to include the thermal-hydraulic feedback during the Monte Carlo burnup simulations, while preserving its unconditional stability property. At each time step, the implicit solution (for the end-of-step neutron flux, fuel nuclide densities and thermal-hydrauli...
Narski Jacek
2011-11-01
Full Text Available In this paper a strategy is investigated for the spatial coupling of an asymptotic preserving scheme with the asymptotic limit model, associated to a singularly perturbed, highly anisotropic, elliptic problem. This coupling strategy appears to be very advantageous as compared with the numerical discretization of the initial singular perturbation model or the purely asymptotic preserving scheme introduced in previous works [3, 5]. The model problem addressed in this paper is well suited for the simulation of a plasma in the presence of a magnetic field, whose intensity may vary considerably within the simulation domain.
Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel
Alachiotis Nikolaos
2012-08-01
Full Text Available Abstract Background Aligning short DNA reads to a reference sequence alignment is a prerequisite for detecting their biological origin and analyzing them in a phylogenetic context. With the PaPaRa tool we introduced a dedicated dynamic programming algorithm for simultaneously aligning short reads to reference alignments and corresponding evolutionary reference trees. The algorithm aligns short reads to phylogenetic profiles that correspond to the branches of such a reference tree. The algorithm needs to perform an immense number of pairwise alignments. Therefore, we explore vector intrinsics and GPUs to accelerate the PaPaRa alignment kernel. Results We optimized and parallelized PaPaRa on CPUs and GPUs. Via SSE 4.1 SIMD (Single Instruction, Multiple Data intrinsics for x86 SIMD architectures and multi-threading, we obtained a 9-fold acceleration on a single core as well as linear speedups with respect to the number of cores. The peak CPU performance amounts to 18.1 GCUPS (Giga Cell Updates per Second using all four physical cores on an Intel i7 2600 CPU running at 3.4 GHz. The average CPU performance (averaged over all test runs is 12.33 GCUPS. We also used OpenCL to execute PaPaRa on a GPU SIMT (Single Instruction, Multiple Threads architecture. A NVIDIA GeForce 560 GPU delivered peak and average performance of 22.1 and 18.4 GCUPS respectively. Finally, we combined the SIMD and SIMT implementations into a hybrid CPU-GPU system that achieved an accumulated peak performance of 33.8 GCUPS. Conclusions This accelerated version of PaPaRa (available at http://www.exelixis-lab.org/software.html provides a significant performance improvement that allows for analyzing larger datasets in less time. We observe that state-of-the-art SIMD and SIMT architectures deliver comparable performance for this dynamic programming kernel when the “competing programmer approach” is deployed. Finally, we show that overall performance can be substantially increased
A hybrid scheme for gas-dust systems stiffly coupled via viscous drag
Miniati, Francesco
2010-05-01
We present a stable and convergent method for studying a system of gas and dust, coupled through viscous drag in both non-stiff and stiff regimes. To account for the effects of dust drag in the update of the fluid quantities, we employ a fluid description of the dust component and study the modified gas-dust hyperbolic system following the approach in Miniati and Colella [19]. In addition to two entropy waves for the gas and dust components, respectively, the extended system includes three waves driven partially by gas pressure and partially by dust drift, which, in the limit of vanishing coupling, tend to the two original acoustic waves and the unhindered dust streaming. Based on this analysis we formulate a predictor step providing first order accurate reconstruction of the time-averaged state variables at cell interfaces, whence a second order accurate estimate of the conservative fluxes can be obtained through a suitable linearized Riemann solver. The final source term update is carried out using a one-step, second order accurate, L-stable, predictor corrector asymptotic method (the α-QSS method suggested by Mott et al. [21]). This procedure completely defines a two-fluid method for gas-dust system. Using the updated fluid solution allows us to then advance the individual particle solutions, including self-consistently the time evolution of the gas velocity in the estimate of the drag force. This is done with a suitable particle scheme also based on the α-QSS method. A set of benchmark problems shows that our method is stable and convergent. When dust is modeled as a fluid (two-fluid) second order accuracy is achieved in both stiff and non-stiff regimes, whereas when dust is modeled with particles (hybrid) second order is achieved in the non-stiff regime and first order otherwise.
Ryerson, F. J.; Ezzedine, S. M.; Antoun, T.
2013-12-01
equation for the distribution of k is solved, provided that Cauchy data are appropriately assigned. In the next stage, only a limited number of passive measurements are provided. In this case, the forward and inverse PDEs are solved simultaneously. This is accomplished by adding regularization terms and filtering the pressure gradients in the inverse problem. Both the forward and the inverse problem are either simultaneously or sequentially coupled and solved using implicit schemes, adaptive mesh refinement, Galerkin finite elements. The final case arises when P, k, and Q data only exist at producing wells. This exceedingly ill posed problem calls for additional constraints on the forward-inverse coupling to insure that the production rates are satisfied at the desired locations. Results from all three cases are presented demonstrating stability and accuracy of the proposed approach and, more importantly, providing some insights into the consequences of data under sampling, uncertainty propagation and quantification. We illustrate the advantages of this novel approach over the common UQ forward drivers on several subsurface energy problems in either porous or fractured or/and faulted reservoirs. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.
Ching-Lin Fan
2014-08-01
Full Text Available Minimizing the parasitic capacitance and the number of photo-masks can improve operational speed and reduce fabrication costs. Therefore, in this study, a new two-photo-mask process is proposed that exhibits a self-aligned structure without an etching-stop layer. Combining the backside-ultraviolet (BUV exposure and backside-lift-off (BLO schemes can not only prevent the damage when etching the source/drain (S/D electrodes but also reduce the number of photo-masks required during fabrication and minimize the parasitic capacitance with the decreasing of gate overlap length at same time. Compared with traditional fabrication processes, the proposed process yields that thin-film transistors (TFTs exhibit comparable field-effect mobility (9.5 cm2/V·s, threshold voltage (3.39 V, and subthreshold swing (0.3 V/decade. The delay time of an inverter fabricated using the proposed process was considerably decreased.
Yoshimura, Tetsuzo; Takeda, Daisuke; Sato, Takuya; Kinugasa, Yoshihiko; Nawata, Hideyuki
2016-03-01
Self-organized optical waveguides formed in a photopolymer using two-photon photochemistry is proposed for self-aligned optical couplings involving nano-scale optical devices with wide tolerances in lateral misalignments. Simulations based on the finite-difference time-domain method revealed that on introducing a 400-nm write beam and a 780-nm write beam into the two-photon photopolymer respectively from two 600-nm-wide waveguides facing each other with 32 μm gap a self-aligned coupling waveguide called a two-photon self-organized lightwave network (SOLNET) is formed between the two waveguides. The lateral misalignment tolerance was found to be 3000 nm, which is five times larger than the misalignment limit of ~600 nm in waveguides formed by conventional one-photon photochemistry. Preliminary experiments demonstrated that the two-photon SOLNETs are formed between multimode optical fibers by introducing a 448-nm write beam and a 780-nm (or 856-nm) write beam from the fibers into a photosensitive organic/inorganic hybrid material, SUNCONNECT®, with doped camphorquinone (or biacetyl).
The compatibility between accuracy and stability of the quasilinear equations is studied. Three stuations are analyzed: the discontinuous P-1 approximation of the first order quasilinear equation, the two dimensional version of the Lax-Friedrichs scheme and the coupling of modes in a plasma. For the one dimensional case, the proposed scheme matches the available data. In the two dimensional case, tests to show the explosion condition are performed. This investigation can be applied in laser-matter interactions, nonlinear optics and in many fields of physics
Highlights: • A data translation scheme has been developed for coupling Monte Carlo neutronics and CFD simulations. • It contains a generic data translation kernel, and interfaces for the MCNP, CFX and Fluent code. • A blanket test case model was investigated for validation and verification purposes. • Results of the so-called Inversion Check are very close to MCNP calculated results. - Abstract: The design of fusion device components is achieved through iterative coupled neutronics and thermal hydraulics analyses. A translation scheme has been developed for transferring the nuclear heating data from Monte Carlo (MC) neutronic calculations to CFD simulations. It contains a generic data translation kernel which supports the high-fidelity data mapping of MC meshes on CFD meshes, and provides interfaces for processing the nuclear response data on the meshes for CFD codes. This translation scheme has been implemented in the open-source pre- and post-processing platform SALOME to extend its capabilities on data manipulations and visualizations. For verification purposes, a blanket test case based on the Helium Cooled Pebble Bed Test Blanket Module was investigated. The processing of the heating distribution data was validated through a so-called Inversion Check comparing the inverted heating field with the original MC tally distribution. The results of the verification have been discussed in detail, and the reliability of the data translation scheme is concluded
Pair-eigenstates and mutual alignment of coupled molecular rotors in a magnetic field
Sharma, Ketan
2016-01-01
We examine the rotational states of a pair of polar $^2\\Sigma$ molecules subject to a uniform magnetic field. The electric dipole-dipole interaction between the molecules creates entangled pair-eigenstates of two types. In one type, the Zeeman interaction between the inherently paramagnetic molecules and the magnetic field destroys the entanglement of the pair-eigenstates, whereas in the other type it does not. The pair-eigenstates exhibit numerous intersections, which become avoided for pair-eigenstates comprised of individual states that meet the selection rules $\\Delta J_{i}=0,\\pm 1$, $\\Delta N_{i}=0,\\pm 2$, and $\\Delta M_{i}=0,\\pm 1$ imposed by the electric dipole-dipole operator. Here $J_{i}$, $N_{i}$ and $M_{i}$ are the total, rotational and projection angular momentum quantum numbers of molecules $i=1,2$ in the absence of the electric dipole-dipole interaction. We evaluate the mutual alignment of the pair-eigenstates and find it to be independent of the magnetic field, except for states that undergo av...
Quantum dot arrays have been projected as the material of choice for next generation displays and photodetectors. Extensive ongoing research aims at improving optical and electrical efficiencies of such devices. We report experimental results on non-local long range emission intensity enhancement and anisotropy in quantum dot assemblies induced by isolated and partially aligned gold nanoantennas. Spatially resolved photoluminescence clearly demonstrate that the effect is maximum, when the longitudinal surface plasmon resonance of the nanoantenna is resonant with the emission maxima of the quantum dots. We estimated the decay length of this enhancement to be ∼2.6 μm, which is considerably larger than the range of near field interaction of metal nanoantenna. Numerical simulations qualitatively capture the near field behavior of the nanorods but fail to match the experimentally observed non-local effects. We have suggested how strong interactions of quantum dots in the close packed assemblies, mediated by the nanoantennas, could lead to such observed behavior.
Tripathi, L. N.; Praveena, M.; Valson, Pranay; Basu, J. K., E-mail: basu@physics.iisc.ernet.in [Department of Physics, Indian Institute of Science, Bangalore 560012 (India)
2014-10-20
Quantum dot arrays have been projected as the material of choice for next generation displays and photodetectors. Extensive ongoing research aims at improving optical and electrical efficiencies of such devices. We report experimental results on non-local long range emission intensity enhancement and anisotropy in quantum dot assemblies induced by isolated and partially aligned gold nanoantennas. Spatially resolved photoluminescence clearly demonstrate that the effect is maximum, when the longitudinal surface plasmon resonance of the nanoantenna is resonant with the emission maxima of the quantum dots. We estimated the decay length of this enhancement to be ∼2.6 μm, which is considerably larger than the range of near field interaction of metal nanoantenna. Numerical simulations qualitatively capture the near field behavior of the nanorods but fail to match the experimentally observed non-local effects. We have suggested how strong interactions of quantum dots in the close packed assemblies, mediated by the nanoantennas, could lead to such observed behavior.
Multi-scale, multi-physics problems reveal significant challenges while dealing with coupled neutronic/thermal-hydraulic solutions. Current generation of codes applied to Light Water Reactors (LWR) are based on 3D neutronic nodal methods coupled with one or two phase flow thermal-hydraulic system or sub-channel codes. In addition, spatial meshing and temporal schemes are crucial for the proper description of the non-symmetrical core behavior in case of transient and accidents e.g. reactivity insertion accidents. This paper describes the coupling approach between the 3D neutron diffusion code COBAYA3 and the sub-channel code SUBCHANFLOW within SALOME. The coupling is done inside the SALOME open source platform that is characterized by a powerful pre- and post-processing capabilities and a novel functionality for mapping of the neutronic and thermal hydraulic domains. The peculiar functionalities of SALOME and the steps required for the code integration and coupling are presented. The validation of the coupled codes is done based on two benchmarks the PWR MOX/UO2 RIA and the TMI-1 MSLB benchmark. A discussion of the prediction capability of COBAYA3/SUBCHANFLOW compared to other coupled solutions will be provided too. (authors)
We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and MS = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH2CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme
This thesis is part of the validation process of using coupled 3D neutronics and thermal-hydraulics codes for studying accidental situations with boiling. First part is dedicated to a numerical stability analysis of neutronics and thermal-hydraulics coupled schemes. Both explicit and semi-implicit coupling schemes were applied to solve the set of equations describing the linearized neutronics and thermal-hydraulics of point reactor. Point reactor modelling was preferred to obtain analytical expressions of eigenvalues of the discretized Systems. Stability criteria, based on eigenvalues, was calculated as well as neutronic and thermalhydraulic responses of the System following insertion of a reactivity step. Results show no severe restriction of time domain, stability wise. Actual transient calculations using coupled neutronics and thermal-hydraulics codes, like COCCINELLE and THYC developed at Electricite de France, do not show stability problems. Second part introduces surface spline as a new neutronic feedback model. The cross influences of feedback parameters is now taken into account. Moderator temperature and density were modeled. This method, simple and accurate, allows an homogeneous description of cross-sections overall operating reactor situations including accidents with boiling. (author)
Echim, M.; De Keyser, J. M.; Maggiolo, R.
2012-12-01
In the topside ionosphere the field-aligned currents connect to perpendicular, Pedersen and Hall, currents. The current continuity provides a mathematical closure condition that "couples" field-aligned properties, like the parallel electric fields, to ionospheric properties, like the height-integrated Pedersen conductivity. The current-voltage relation (CVR) describes the field-aligned current density (j||) as a function of the field-aligned potential drop (ΔΦ) between the magnetosphere and the ionosphere, as well as the plasma properties in the magnetosphere and in the ionosphere. The CVR is generally obtained from a kinetic treatment of the adiabatic motion of particles in a mirroring magnetic field and a field-aligned electric field. We investigate the coupling between sheared flows at the magnetopause, described by a Vlasov equilibrium solution, and field aligned currents and auroral arcs. The model solves the current continuity equation and neglects the divergence of the Hall currents. The solutions evidence channels of precipitating accelerated particles producing auroral arcs, upward field-aligned currents and regions of enhanced Pedersen conductance. We investigate the effects due to variations of generator properties, particularly of the velocity shear at the magnetopause, and of the gradient of the kinetic pressure, on the characteristics of the auroral structures. An increased shear of velocity at the magnetopause generates brighter arcs and larger field-aligned current densities due to the increasing of the field-aligned potential drop. The solutions of the parametric study are discussed in the context of the mechanisms for polar cap arcs formation.
Complete text of publication follows. The convection electric field penetrates to the equatorial ionosphere with no significant shielding during DP2 fluctuation events with periods of 30-60 min (Nishida, JGR, 1968; Kikuchi et al., JGR, 1996; Kobea et al., AG, 1998) and even during storm main phase continuing for several hours (Huang et al., JGR, 2005; JASTP, 2007). On the other hand, shielding becomes effective in 17-20 min during substorm growth phase (Somayajulu et al., GRL, 1987; Kikuchi et al., JGR, 2000), and 1 h during storm main phase (Kikuchi et al., JGR, 2008). Overshielding occurs when the IMF turns northward or the southward IMF decreases during substorms (Kikuchi et al., JGR, 2003) and during storm recovery phase (Kikuchi et al., JGR, 2008). To clarify relative contributions of the convection and shielding electric fields in the low latitude ionosphere, we analyzed equatorial DP2 fluctuation events of 30-60 min periods using magnetometer data, SuperDARN convection maps and electric potentials calculated with the comprehensive ring current model (CRCM) (Fok et al., JGR, 2001). The equatorial DP2 fluctuation was found to be caused by alternating eastward (e-EJ) and westward electrojets (w-EJ) in the equatorial ionosphere, which were caused by the southward and northward IMF, respectively. Using SuperDARN convection maps, we further show that the e-EJ was associated with large-scale two-cell convection vortices, while the w-EJ accompanied reverse flow vortices equatorward of the two-cell vortices. With the aid of the CRCM, we suggest that the reverse flow vortices were associated with the Region-2 field-aligned currents (R2 FACs) that caused overshielding at the equator. Thus, we suggest that the R1 and R2 FACs are connected with the e-EJ and w-EJ, respectively. As a result, the overshielding electric field and current can appear at mid-equatorial latitudes irrespective of the period of fluctuations, when the R1 FAC decreases its intensity. This scenario
Highlights: • Inductively-coupled plasma is used for nanostructured silicon at room temperature. • Low temperature deposition allows device processing on various substrates. • Deposition pressure is the most effective parameter in controlling nanostructure. • Films consist of quantum dots in a-Si matrix and exhibit columnar vertical growth. • Films are porous to oxygen infusion along columnar grain boundaries. - Abstract: Vertically-aligned nanostructured silicon films are deposited at room temperature on p-type silicon wafers and glass substrates by inductively-coupled, plasma-enhanced chemical vapor deposition (ICPCVD). The nanocrystalline phase is achieved by reducing pressure and increasing RF power. The crystalline volume fraction (Xc) and the size of the nanocrystals increase with decreasing pressure at constant power. Columnar growth of nc-Si:H films is observed by high resolution transmission electron microscopy (HRTEM) and scanning electron microscopy (SEM). The films exhibit cauliflower-like structures with high porosity that leads to slow but uniform oxidation after exposure to air at room temperature. Films deposited at low pressures exhibit photoluminescence (PL) signals that may be deconvoluted into three distinct Gaussian components: 760–810, 920–935, and 990–1000 nm attributable to the quantum confinement and interface defect states. Hydrogen dilution is manifested in significant enhancement of the PL, but it has little effect on the nanocrystal size and Xc
An efficient piezoelectric smart beam finite element based on Reddy’s third-order displacement field and layerwise linear potential is presented here. The present formulation is based on the coupled polynomial field interpolation of variables, unlike conventional piezoelectric beam formulations that use independent polynomials. Governing equations derived using a variational formulation are used to establish the relationship between field variables. The resulting expressions are used to formulate coupled shape functions. Starting with an assumed cubic polynomial for transverse displacement (w) and a linear polynomial for electric potential (φ), coupled polynomials for axial displacement (u) and section rotation (θ) are found. This leads to a coupled quadratic polynomial representation for axial displacement (u) and section rotation (θ). The formulation allows accommodation of extension–bending, shear–bending and electromechanical couplings at the interpolation level itself, in a variationally consistent manner. The proposed interpolation scheme is shown to eliminate the locking effects exhibited by conventional independent polynomial field interpolations and improve the convergence characteristics of HSDT based piezoelectric beam elements. Also, the present coupled formulation uses only three mechanical degrees of freedom per node, one less than the conventional formulations. Results from numerical test problems prove the accuracy and efficiency of the present formulation. (paper)
J. D. Nichols
2005-03-01
Full Text Available We consider the effect of field-aligned voltages on the magnetosphere-ionosphere coupling current system associated with the breakdown of rigid corotation of equatorial plasma in Jupiter's middle magnetosphere. Previous analyses have assumed perfect mapping of the electric field and flow along equipotential field lines between the equatorial plane and the ionosphere, whereas it has been shown that substantial field-aligned voltages must exist to drive the field-aligned currents associated with the main auroral oval. The effect of these field-aligned voltages is to decouple the flow of the equatorial and ionospheric plasma, such that their angular velocities are in general different from each other. In this paper we self-consistently include the field-aligned voltages in computing the plasma flows and currents in the system. A third order differential equation is derived for the ionospheric plasma angular velocity, and a power series solution obtained which reduces to previous solutions in the limit that the field-aligned voltage is small. Results are obtained to second order in the power series, and are compared to the original zeroth order results with no parallel voltage. We find that for system parameters appropriate to Jupiter the effect of the field-aligned voltages on the solutions is small, thus validating the results of previously-published analyses.
A self-consistent approximation scheme is formulated for the calculation of the dynamical linear polarizability of classical electron monolayers. The derivation is carried out in two stages. In the first stage, the authors formulate a simple response function relation linking linear and quadratic polarizabilities; the dynamical coupling function is expressed entirely in terms of the latter. The basic elements in the derivation are the first BBGKY kinetic equation (prepared in the velocity average approximation) and the non-linear fluctuation-dissipation theorem. The new response function relation is exact at zero frequency and exactly satisfies the third frequency moment sum rule. In the second stage, self-consistency is guaranteed by approximating the quadratic polarizability in terms of linear ones. The theory is examined in the weak coupling limit where it is found that a dominant γ-independent non-RPA contribution to the damping is missing. The structure of the missing term is identified at arbitrary coupling strengths. Work is in progress to see how it can be incorporated into the approximation scheme. (author)
C. Knote
2012-10-01
Full Text Available Clouds are reaction chambers for atmospheric trace gases and aerosols, and the associated precipitation is a major sink for atmospheric constituents. The regional chemistry-climate model COSMO-ART has been lacking a description of wet scavenging of gases and aqueous-phase chemistry. In this work we present a coupling of COSMO-ART with a wet scavenging and aqueous-phase chemistry scheme. The coupling is made consistent with the cloud microphysics scheme of the underlying meteorological model COSMO. While the choice of the aqueous-chemistry mechanism is flexible, the effects of a simple sulfur oxidation scheme are shown in the application of the coupled system in this work. We give details explaining the coupling and extensions made, then present results from idealized flow-over-hill experiments in a 2-D model setup and finally results from a full 3-D simulation. Comparison against measurement data shows that the scheme efficiently reduces SO_{2} trace gas concentrations by 0.3 ppbv (−30% on average, while leaving O_{3} and NO_{x} unchanged. PM_{10} aerosol mass, which has been overestimated previously, is now in much better agreement with measured values due to a stronger scavenging of coarse particles. While total PM_{2.5} changes only little, chemical composition is improved notably. Overestimations of nitrate aerosols are reduced by typically 0.5–1 μg m^{−3} (up to −2 μg m^{−3} in the Po Valley while sulfate mass is increased by 1–1.5 μg m^{−3} on average (up to 2.5 μg m^{−3} in Eastern Europe. The effect of cloud processing of aerosols on its size distribution, i. e. a shift towards larger diameters, is observed. Compared against wet deposition measurements the system underestimates the total wet deposited mass for the simulated case study. We find that while evaporation of cloud droplets dominates in higher altitudes, evaporation of precipitation can
Takahashi, Isao; Hoshi, Yusuke; Tayagaki, Takeshi; Oikawa, Takafumi; Ohdaira, Keisuke; Usami, Noritaka
2015-08-01
We have recently developed a new structure for solar cells that consists of photonic nanostructures coupled with vertically aligned Ge quantum dots on a crystalline Si substrate. For the fabrication of a solar cell device, a heterojunction with a-Si:H was chosen because its processing temperature is less than 200 °C, at which point Ge atoms cannot diffuse into Si layers. In this study, we developed a guideline for the most appropriate cell structures to take advantage of the Ge layer by fabricating heterojunction solar cells with various structures. As a result, we confirmed that the carriers absorbed in Ge quantum dots contributed output current when Ge quantum dots are fabricated on the pn-junction side. Hence, the presence of built-in potential in a Ge dot layer was found to be necessary to extract the carriers generated in the Ge layer. In addition, carrier transport in Ge quantum dots is improved under conditions of reverse bias. Therefore, the electrical field in the Ge layer is a key parameter to improve solar cell performance in our proposed structure.
High-order Spatio-temporal Schemes for Coupled, Multi-physics Reactor Simulations
Mr. Vijay S. Mahadevan; Dr. Jean C. Ragusa
2008-09-01
This report summarizes the work done in the summer of 08 by the Ph.D. student Vijay Mahadevan. The main focus of the work was to coupled 3-D neutron difusion to 3-D heat conduction in parallel with accuracy greater than or equal to 2nd order in space and time. Results show that the goal was attained.
Christensen, H. M.; Berner, J.; Coleman, D.; Palmer, T.
2015-12-01
Stochastic parameterizations have been used for more than a decade in atmospheric models to represent the variability of unresolved sub-grid processes. They have a beneficial effect on the spread and mean state of medium- and extended-range forecasts (Buizza et al. 1999, Palmer et al. 2009). There is also increasing evidence that stochastic parameterization of unresolved processes could be beneficial for the climate of an atmospheric model through noise enhanced variability, noise-induced drift (Berner et al. 2008), and by enabling the climate simulator to explore other flow regimes (Christensen et al. 2015; Dawson and Palmer 2015). We present results showing the impact of including the Stochastically Perturbed Parameterization Tendencies scheme (SPPT) in coupled runs of the National Center for Atmospheric Research (NCAR) Community Atmosphere Model, version 4 (CAM4) with historical forcing. The SPPT scheme accounts for uncertainty in the CAM physical parameterization schemes, including the convection scheme, by perturbing the parametrised temperature, moisture and wind tendencies with a multiplicative noise term. SPPT results in a large improvement in the variability of the CAM4 modeled climate. In particular, SPPT results in a significant improvement to the representation of the El Nino-Southern Oscillation in CAM4, improving the power spectrum, as well as both the inter- and intra-annual variability of tropical pacific sea surface temperatures. References: Berner, J., Doblas-Reyes, F. J., Palmer, T. N., Shutts, G. J., & Weisheimer, A., 2008. Phil. Trans. R. Soc A, 366, 2559-2577 Buizza, R., Miller, M. and Palmer, T. N., 1999. Q.J.R. Meteorol. Soc., 125, 2887-2908. Christensen, H. M., I. M. Moroz & T. N. Palmer, 2015. Clim. Dynam., doi: 10.1007/s00382-014-2239-9 Dawson, A. and T. N. Palmer, 2015. Clim. Dynam., doi: 10.1007/s00382-014-2238-x Palmer, T.N., R. Buizza, F. Doblas-Reyes, et al., 2009, ECMWF technical memorandum 598.
Relativistic K-LL Auger spectra in the intermediate-coupling scheme with configuration interaction
Chen, M. H.; Crasemann, B.; Mark, H.
1980-01-01
Theoretical K-LL Auger spectra from relativistic Dirac-Hartree-Slater calculations in intermediate coupling with configuration interaction (ICWCI) are considered. Calculated transition rates for 25 elements with Z between 18 and 96, inclusive, are listed and compare well with experimental data. Relativistic effects are found to be important above Z equal to about 35, and ICWCI is necessary to describe the spectra for Z less than about 60.
A Hybrid Scheme for Gas-Dust Systems Stiffly Coupled via Viscous Drag
Miniati, Francesco
2010-01-01
We present a stable and convergent method for studying a system of gas and dust, coupled through viscous drag in both non-stiff and stiff regimes. To account for the effects of dust drag in the update of the fluid quantities, we employ a fluid description of the dust component and study the modified gas-dust hyperbolic system following the approach in Miniati & Colella (2007). In addition to two entropy waves for the gas and dust components, respectively, the extended system includes three wa...
External linking scripts between Monte Carlo transport codes and burnup codes, and complete integration of burnup capability into Monte Carlo transport codes, have been or are currently being developed. Monte Carlo linked burnup methodologies may serve as an excellent benchmark for new deterministic burnup codes used for advanced systems; however, there are some instances where deterministic methodologies break down (i.e., heavily angularly biased systems containing exotic materials without proper group structure) and Monte Carlo burn up may serve as an actual design tool. Therefore, researchers are also developing these capabilities in order to examine complex, three-dimensional exotic material systems that do not contain benchmark data. Providing a reference scheme implies being able to associate statistical errors to any neutronic value of interest like k(eff), reaction rates, fluxes, etc. Usually in Monte Carlo, standard deviations are associated with a particular value by performing different independent and identical simulations (also referred to as 'cycles', 'batches', or 'replicas'), but this is only valid if the calculation itself is not biased. And, as will be shown in this paper, there is a bias in the methodology that consists of coupling transport and depletion codes because Bateman equations are not linear functions of the fluxes or of the reaction rates (those quantities being always measured with an uncertainty). Therefore, we have to quantify and correct this bias. This will be achieved by deriving an unbiased minimum variance estimator of a matrix exponential function of a normal mean. The result is then used to propose a reference scheme to solve Boltzmann/Bateman coupled equations, thanks to Monte Carlo transport codes. Numerical tests will be performed with an ad hoc Monte Carlo code on a very simple depletion case and will be compared to the theoretical results obtained with the reference scheme. Finally, the statistical error propagation
A Hybrid Scheme for Gas-Dust Systems Stiffly Coupled via Viscous Drag
Miniati, Francesco
2010-01-01
We present a stable and convergent method for studying a system of gas and dust, coupled through viscous drag in both non-stiff and stiff regimes. To account for the effects of dust drag in the update of the fluid quantities, we employ a fluid description of the dust component and study the modified gas-dust hyperbolic system following the approach in Miniati & Colella (2007). In addition to two entropy waves for the gas and dust components, respectively, the extended system includes three waves driven partially by gas pressure and partially by dust drift, which, in the limit of vanishing coupling, tend to the two original acoustic waves and the unhindered dust streaming. Based on this analysis we formulate a predictor step providing first order accurate reconstruction of the time-averaged state variables at cell interfaces, whence a second order accurate estimate of the conservative fluxes can be obtained through a suitable linearized Riemann solver. The final source term update is carried out using a on...
MESMO 2: a mechanistic marine silica cycle and coupling to a simple terrestrial scheme
K. Matsumoto
2012-09-01
Full Text Available Here we describe the second version of Minnesota Earth System Model for Ocean biogeochemistry (MESMO 2, an earth system model of intermediate complexity, which consists of a dynamical ocean, dynamic-thermodynamic sea ice, and energy moisture balanced atmosphere. The new version has more realistic land ice masks and is driven by seasonal winds. A major aim in version 2 is representing the marine silica cycle mechanistically in order to investigate climate-carbon feedbacks involving diatoms, a critically important class of phytoplankton in terms of carbon export production. This is achieved in part by including iron, on which phytoplankton uptake of silicic acid depends. Also, MESMO 2 is coupled to an existing terrestrial model, which allows for the exchange of carbon, water, and energy between land and the atmosphere. The coupled model, called MESMO 2E, is appropriate for more complete earth system simulations. The new version was calibrated with the goal of preserving reasonable interior ocean ventilation and various biological production rates in the ocean and land, while simulating key features of the marine silica cycle.
A scheme for two-photon lasing with two coupled flux qubits in circuit quantum electrodynamics
Huang, Wen; Zou, Xu-Bo; Guo, Guang-Can
2015-06-01
We theoretically study the system of a superconducting transmission line resonator coupled to two interacting superconducting flux qubits. It is shown that under certain conditions the resonator mode can be tuned to two-photon resonance between the ground state and the highest excited state while the middle excited states are far-off resonance. Furthermore, we study the steady-state properties of the flux qubits and resonator, such as the photon statistics, the spectrum and squeezing of the resonator, and demonstrate that two-photon laser can be implemented with current experimental technology. Project supported by the National Fundamental Research Program of China (Grant No. 2011cba00200), the National Natural Science Foundation of China (Grant No. 11274295), and the Doctor Foundation of Education Ministry of China (Grant No. 20113402110059).
A novel spectral finite element formulation scheme is presented for modeling a plate structure with surface-mounted piezoelectric transducers. Surface-mounted piezoelectric transducers may asymmetrically distribute the mass in the thickness direction of the plate/panel structure, resulting in a coupled mass matrix in spectral element formulation. A new procedure is developed by equating the layer-wise kinematics of the element using undetermined Lagrange multipliers to achieve the diagonal mass matrix. To demonstrate the effectiveness of the element formulation scheme, a two-dimensional piezoelectric spectral element is constructed with 36 nodes and five active/passive layers (layers: transducer/bond/plate/bond/transducer). The performance of the developed element is illustrated by (a) simulation of Lamb wave propagation and estimation of its velocity, and (b) simulation of the effect of transducer size, its dynamics and shear lag on sensor’s response. The results presented highlight the importance of modeling the dynamics of transducers and understanding the effects on sensor response. The presented technique has relevance in the field of structural health monitoring, wherein it can be used to model and simulate aircraft panels with surface-mounted piezoelectric transducers. (paper)
Datta, Dipayan, E-mail: datta.dipayan@gmail.com; Gauss, Jürgen, E-mail: gauss@uni-mainz.de [Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz (Germany)
2015-07-07
We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and M{sub S} = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH{sub 2}CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme.
Bocquet, M.; Haussaire, J. M.
2015-12-01
Bocquet and Sakov have recently introduced a low-order model based on the coupling of thechaotic Lorenz-95 model which simulates winds along a mid-latitude circle, with thetransport of a tracer species advected by this wind field. It has been used to testadvanced data assimilation methods with an online model that couples meteorology andtracer transport. In the present study, the tracer subsystem of the model is replacedwith a reduced photochemistry module meant to emulate reactive air pollution. Thiscoupled chemistry meteorology model, the L95-GRS model, mimics continental andtranscontinental transport and photochemistry of ozone, volatile organic compounds andnitrogen dioxides.The L95-GRS is specially useful in testing advanced data assimilation schemes, such as theiterative ensemble Kalman smoother (IEnKS) that combines the best of ensemble andvariational methods. The model provides useful insights prior to any implementation ofthe data assimilation method on larger models. For instance, online and offline dataassimilation strategies based on the ensemble Kalman filter or the IEnKS can easily beevaluated with it. It allows to document the impact of species concentration observationson the wind estimation. The model also illustrates a long standing issue in atmosphericchemistry forecasting: the impact of the wind chaotic dynamics and of the chemical speciesnon-chaotic but highly nonlinear dynamics on the selected data assimilation approach.
Bassily, Raef
2010-01-01
In this paper, we introduce two new achievable schemes for the fading multiple access wiretap channel (MAC-WT). In the model that we consider, we assume that perfect knowledge of the state of all channels is available at all the nodes in a causal fashion. Our schemes use this knowledge together with the time varying nature of the channel model to align the interference from different users at the eavesdropper perfectly in a one-dimensional space while creating a higher dimensionality space for the interfering signals at the legitimate receiver hence allowing for better chance of recovery. While we achieve this alignment through signal scaling at the transmitters in our first scheme (scaling based alignment (SBA)), we let nature provide this alignment through the ergodicity of the channel coefficients in the second scheme (ergodic secret alignment (ESA)). For each scheme, we obtain the resulting achievable secrecy rate region. We show that the secrecy rates achieved by both schemes scale with SNR as 1/2log(SNR...
Motahari, Abolfazl Seyed; Maddah-Ali, Mohammad-Ali; Khandani, Amir Keyvan
2010-01-01
In this paper, we show that the total Degrees-Of-Freedoms (DOF) of the $K$-user Gaussian Interference Channel (GIC) can be achieved by incorporating a new alignment technique known as \\emph{real interference alignment}. This technique compared to its ancestor \\emph{vector interference alignment} performs on a single real line and exploits the properties of real numbers to provide optimal signaling. The real interference alignment relies on a new coding scheme in which several data streams having fractional multiplexing gains are sent by transmitters and interfering streams are aligned at receivers. The coding scheme is backed up by a recent result in the field of Diophantine approximation, which states that the convergence part of the Khintchine-Groshev theorem holds for points on non-degenerate manifolds.
Contreras Aburto, Claudio; Nägele, Gerhard
2013-10-01
We develop a general method for calculating conduction-diffusion transport properties of strong electrolyte mixtures, including specific conductivities, steady-state electrophoretic mobilities, and self-diffusion coefficients. The ions are described as charged Brownian spheres, and the solvent-mediated hydrodynamic interactions (HIs) are also accounted for in the non-instantaneous ion atmosphere relaxation effect. A linear response expression relating long-time partial mobilities to associated dynamic structure factors is employed in our derivation of a general mode coupling theory (MCT) method for the conduction-diffusion properties. A simplified solution scheme for the MCT method is discussed. Analytic results are obtained for transport coefficients of pointlike ions which, for very low ion concentrations, reduce to the Deby-Falkenhagen-Onsager-Fuoss limiting law expressions. As an application, an unusual non-monotonic concentration dependence of the polyion electrophoretic mobility in a mixture of two binary electrolytes is discussed. In addition, leading-order extensions of the limiting law results are derived with HIs included. The present method complements a related MCT method by the authors for the electrolyte viscosity and shear relaxation function [C. Contreras-Aburto and G. Nägele, J. Phys.: Condens. Matter 24, 464108 (2012)], so that a unifying scheme for conduction-diffusion and viscoelastic properties is obtained. We present here the general framework of the method, illustrating its versatility for conditions where fully analytic results are obtainable. Numerical results for conduction-diffusion properties and the viscosity of concentrated electrolytes are presented in Paper II [C. Contreras Aburto and G. Nägele, J. Chem. Phys. 139, 134110 (2013)].
The prediction of stresses and displacements around tunnels buried deep within the earth is an important class of geomechanics problems. The material behavior immediately surrounding the tunnel is typically nonlinear. The surrounding mass, even if it is nonlinear, can usually be characterized by a simple linear elastic model. The finite element method is best suited for modeling nonlinear materials of limited volume, while the boundary element method is well suited for modeling large volumes of linear elastic material. A computational scheme that couples the finite element and boundary element methods would seem particularly useful for geomechanics problems. A variety of coupling schemes have been proposed, but they rely on direct solution methods. Direct solution techniques have large storage requirements that become cumbersome for large-scale three-dimensional problems. An alternative to direct solution methods is iterative solution techniques. A scheme has been developed for coupling the finite element and boundary element methods that uses an iterative solution method. This report shows that this coupling scheme is valid for problems where nonlinear material behavior occurs in the finite element region
Kazil, J.; Wang, H.; Feingold, G.
2009-12-01
Drizzle in stratocumulus clouds is triggered by low concentrations of cloud condensation nuclei (CCN), and concurrently acts as a sink of CCN. The progression of this cloud-aerosol feedback may result in a transition in marine boundary layer dynamics and cloud structure; Closed cell circulation, characterized by a solid stratocumulus layer, may transition into an open cellular mode featuring low cloud fraction. Aerosol sources may balance the loss of CCN from drizzle, and delay or prevent the emergence of open cell circulation. Such sources include particle emissions from the sea surface, entrainment of aerosol from the free troposphere into the cloud deck, advection from land sources, and aerosol nucleation. In order to investigate the role of aerosol sources and processes in the transition between these two states, we have coupled in detail aerosol processes, cloud microphysics, and gas and aqueous chemistry in the WRF/Chem model. We operate WRF/Chem in Large Eddy Simulation mode. Aerosol nucleation is described with a sulfuric acid/water scheme based on laboratory measurements of the nucleation process. Here we present first results on the role of aerosol nucleation for cloud properties and drizzle formation in pristine conditions of the South-East Pacific region, and in polluted conditions.
Highlights: ► A fixed point iteration (FPI) is implemented in DYNSUB. ► Comparisons between the explicit scheme and the FPI are done. ► The FPI scheme allows moving from one time step to the other with converged solution. ► FPI allows the use of larger time steps without compromising the accuracy of results. ► FPI results are promising and represent an option in order to optimize calculations. -- Abstract: DYNSUB is a novel two-way pin-based coupling of the simplified transport (SP3) version of DYN3D with the subchannel code SUBCHANFLOW. The new coupled code system allows for a more realistic description of the core behaviour under steady state and transients conditions, and has been widely described in Part I of this paper. Additionally to the explicit coupling developed and described in Part I, a nested loop iteration or fixed point iteration (FPI) is implemented in DYNSUB. A FPI is not an implicit scheme but approximates it by adding an iteration loop to the current explicit scheme. The advantage of the method is that it allows the use of larger time steps; however the nested loop iteration could take much more time in getting a converged solution that could be less efficient than the explicit scheme with small time steps. A comparison of the two temporal schemes is performed. The results using FPI are very promising and represent a very good option in order to optimize computational times without losing accuracy. However it is also shown that a FPI scheme can produce inaccurate results if the time step is not chosen in agreement with the analyzed transient.
Marine boundary layer cloud regimes and POC formation in an LES coupled to a bulk aerosol scheme
A. H. Berner
2013-07-01
Full Text Available A large-eddy simulation (LES coupled to a new bulk aerosol scheme is used to study long-lived regimes of aerosol-boundary layer cloud-precipitation interaction and the development of pockets of open cells (POCs in subtropical stratocumulus cloud layers. The aerosol scheme prognoses mass and number concentration of a single log-normal accumulation mode with surface and entrainment sources, evolving subject to processing of activated aerosol and scavenging of dry aerosol by cloud and rain. The LES with the aerosol scheme is applied to a range of steadily-forced simulations idealized from a well-observed POC case. The long-term system evolution is explored with extended two-dimensional simulations of up to 20 days, mostly with diurnally-averaged insolation. One three-dimensional two-day simulation confirms the initial development of the corresponding two-dimensional case. With weak mean subsidence, an initially aerosol-rich mixed layer deepens, the capping stratocumulus cloud slowly thickens and increasingly depletes aerosol via precipitation accretion, then the boundary layer transitions within a few hours into an open-cell regime with scattered precipitating cumuli, in which entrainment is much weaker. The inversion slowly collapses for several days until the cumulus clouds are too shallow to efficiently precipitate. Inversion cloud then reforms and radiatively drives renewed entrainment, allowing the boundary layer to deepen and become more aerosol-rich, until the stratocumulus layer thickens enough to undergo another cycle of open-cell formation. If mean subsidence is stronger, the stratocumulus never thickens enough to initiate drizzle and settles into a steady state. With lower initial aerosol concentrations, this system quickly transitions into open cells, collapses, and redevelops into a different steady state with a shallow, optically thin cloud layer. In these steady states, interstitial scavenging by cloud droplets is the main sink of
Blossier, B; Brinet, M; De Soto, F; Morenas, V; Pène, O; Petrov, K; Rodríguez-Quintero, J
2014-01-01
This paper reports on the determination of $\\alpha_S$ from lattice simulations with 2+1+1 twisted-mass dynamical flavours {\\it via} the computation of the ghost-gluon coupling renormalized in the MOM Taylor scheme. A high-statistics sample of gauge configurations, used to evaluate the coupling from ghost and gluon propagators, allows for the appropriate update of previous results, now performing an improved analysis of data with reduced statistical errors and the systematical uncertainties under a better control.
Ziebell Jenna M
2012-10-01
to cytoarchitecture of dendrites and axons, with no alignment with astrocytes and oligodendrocytes. Iba1-positive rod microglial cells differentially express other known markers for reactive microglia including OX-6 and CD68. Conclusion Diffuse traumatic brain injury induces a distinct rod microglia morphology, unique phenotype, and novel association between cells; these observations entice further investigation for impact on neurological outcome.
In order to increase the accuracy and the degree of spatial resolution of core design studies, coupled Three-Dimensional (3D) neutronics (deterministic and Monte Carlo) and 3D thermal hydraulics (CFD and sub-channel) codes are being developed worldwide. In this paper the optimization of a coupling between MCNP5 code and an in-house development thermal-hydraulics code SUBCHANFLOW is presented. Various improvements of the coupling methodology are presented. With the help of novel interpolation tool a consistent methodology for the preparation of thermal scattering data library have been developed, ensuring that inelastic scattering from bound nuclei is treated at the correct moderator temperature. Trough the utilization of a hybrid coupling with discrete energy Monte-Carlo code KENO a methodology for acceleration of the coupled calculation is being demonstrated. In this approach an additional coupling between KENO and SUBCHANFLOW was developed, the converged results of which are used as initial conditions for the MCNP-SUBCHANFLOW coupling. Acceleration of fission source distribution convergence, by sampling fission source distribution from the power distribution obtained by KENO is also demonstrated. (authors)
In the frame of multi-physics activities at Forschungszentrum Karlsruhe, different coupling schemes between 3D transport and 3D subchannel thermal hydraulic codes are being developed and tested. Such methods are needed to improve the design methodologies and the prediction of local safety margins for both LWR and innovative reactors. Since the iterative solutions are time consuming, these developments are predestined to be carried out in a super computing environment. Recently the coupling of MCNP and COBRA-TF has been developed and tested in a Linux-Cluster. The aim of this investigation was the pin-power prediction of a PWR-fuel assembly taking into account the thermal hydraulics/neutronics feedbacks in the nuclear data. A master program consisting of shell scripts and FORTRAN routines was developed to supervise the execution of the modules as well as to synchronize the tasks to be performed at each time step. First of all the coupled MCNP/COBRA-TF was applied to predict the pin power of a PWR fuel assembly in a Linux Cluster. Converged results were achieved after 8. iterations. Since the CPU-time was rather large, a relaxation method was implemented to speed-up the convergence of the coupled solution. It could be demonstrated that the implemented relaxation method led to a considerable CPU-time reduction. Further investigations are necessary to formulate the coupling scheme in a more general purpose sense i.e. independently of a specific fuel assembly configuration and to be applied for whole core calculations. (authors)
Malgarinos, Ilias; Nikolopoulos, Nikolaos; Gavaises, Manolis
2015-11-01
This study presents the implementation of an interface sharpening scheme on the basis of the Volume of Fluid (VOF) method, as well as its application in a number of theoretical and real cases usually modelled in literature. More specifically, the solution of an additional sharpening equation along with the standard VOF model equations is proposed, offering the advantage of "restraining" interface numerical diffusion, while also keeping a quite smooth induced velocity field around the interface. This sharpening equation is solved right after volume fraction advection; however a novel method for its coupling with the momentum equation has been applied in order to save computational time. The advantages of the proposed sharpening scheme lie on the facts that a) it is mass conservative thus its application does not have a negative impact on one of the most important benefits of VOF method and b) it can be used in coarser grids as now the suppression of the numerical diffusion is grid independent. The coupling of the solved equation with an adaptive local grid refinement technique is used for further decrease of computational time, while keeping high levels of accuracy at the area of maximum interest (interface). The numerical algorithm is initially tested against two theoretical benchmark cases for interface tracking methodologies followed by its validation for the case of a free-falling water droplet accelerated by gravity, as well as the normal liquid droplet impingement onto a flat substrate. Results indicate that the coupling of the interface sharpening equation with the HRIC discretization scheme used for volume fraction flux term, not only decreases the interface numerical diffusion, but also allows the induced velocity field to be less perturbed owed to spurious velocities across the liquid-gas interface. With the use of the proposed algorithmic flow path, coarser grids can replace finer ones at the slight expense of accuracy.
Hansen, Elo Harald; Wang, Jianhua
Various preconditioning procedures encomprising appropriate separation/preconcentration schemes in order to obtain optimal sensitivity and selectivity characteristics when using electrothermal atomic absorption spectrometry (ETAAS) and inductively coupled plasma mass spectrometry (ICPMS) are...
Hansen, Elo Harald; Wang, Jianhua
2002-01-01
Various preconditioning procedures encomprising appropriate separation/preconcentration schemes in order to obtain optimal sensitivity and selectivity characteristics when using electrothermal atomic absorption spectrometry (ETAAS) and inductively coupled plasma mass spectrometry (ICPMS) are...
Dickinson, R.E.; Henderson-Sellers, A.; Kennedy, P.J.
1993-08-01
A comprehensive model of land-surface processes has been under development suitable for use with various National Center for Atmospheric Research (NCAR) General Circulation Models (GCMs). Special emphasis has been given to describing properly the role of vegetation in modifying the surface moisture and energy budgets. The result of these efforts has been incorporated into a boundary package, referred to as the Biosphere-Atmosphere Transfer Scheme (BATS). The current frozen version, BATS1e is a piece of software about four thousand lines of code that runs as an offline version or coupled to the Community Climate Model (CCM).
Position list word aligned hybrid
Deliege, Francois; Pedersen, Torben Bach
2010-01-01
Compressed bitmap indexes are increasingly used for efficiently querying very large and complex databases. The Word Aligned Hybrid (WAH) bitmap compression scheme is commonly recognized as the most efficient compression scheme in terms of CPU efficiency. However, WAH compressed bitmaps use a lot...... of storage space. This paper presents the Position List Word Aligned Hybrid (PLWAH) compression scheme that improves significantly over WAH compression by better utilizing the available bits and new CPU instructions. For typical bit distributions, PLWAH compressed bitmaps are often half the size of WAH...
Dissipative effects on a generation scheme of a W state in an array of coupled Josephson junctions
The dynamics of an open quantum system, consisting of three superconducting qubits interacting with independent reservoirs, is investigated to elucidate the effects of the environment on a unitary generation scheme of W states (Migliore R et al 2006 Phys. Rev. B 74 104503). To this end a microscopic master equation is constructed and its exact resolution predicts the generation of a Werner-like state instead of the W state. A comparison between our model and a more intuitive phenomenological model is also considered, in order to find the limits of the latter approach in the case of structured reservoirs.
Wang, Dong-Yang [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Wen, Jing-Ji [College of Foundation Science, Harbin University of Commerce, Harbin, Heilongjiang 150028 (China); Bai, Cheng-Hua; Hu, Shi; Cui, Wen-Xue [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Wang, Hong-Fu, E-mail: hfwang@ybu.edu.cn [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Zhu, Ai-Dong [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China); Zhang, Shou, E-mail: szhang@ybu.edu.cn [Department of Physics, College of Science, Yanbian University, Yanji, Jilin 133002 (China)
2015-09-15
An effective scheme is proposed to generate the singlet state with three four-level atoms trapped in three distant cavities connected with each other by three optical fibers, respectively. After a series of appropriate atom–cavity interactions, which can be arbitrarily controlled via the selective pairing of Raman transitions and corresponding optical switches, a three-atom singlet state can be successfully generated. The influence of atomic spontaneous decay, photon leakage of cavities and optical fibers on the fidelity of the state is numerically simulated showing that the three-atom singlet state can be generated with high fidelity by choosing the experimental parameters appropriately.
A general Monte Carlo-discrete ordinates radiation transport coupling procedure has been created to study effects of the radiation environment in Hiroshima and Nagasaki due to the bombing of these two cities. The forward two-dimensional, free-field, air-over-ground flux is coupled with an adjoint Monte Carlo calculation. The size, orientation, or translation of the Monte Carlo geometry is unrestricted. The radiation effects calculated are the dose in the interior of a large concrete building in Nagasaki and the activation production of 60Co and 32P in Hiroshima
Golling, T
2007-01-01
The four experiments, ALICE, ATLAS, CMS and LHCb are currently under construction at CERN. They will study the products of proton-proton collisions at the Large Hadron Collider. All experiments are equipped with sophisticated tracking systems, unprecedented in size and complexity. Full exploitation of both the inner detector and the muon system requires an accurate alignment of all detector elements. Alignment information is deduced from dedicated hardware alignment systems and the reconstruction of charged particles. However, the system is degenerate which means the data is insufficient to constrain all alignment degrees of freedom, so the techniques are prone to converging on wrong geometries. This deficiency necessitates validation and monitoring of the alignment. An exhaustive discussion of means to validate is subject to this document, including examples and plans from all four LHC experiments, as well as other high energy experiments.
El Yagoubi, Jalal
2012-11-01
Thermoset materials frequently display non-classical moisture sorption behaviors. In this paper, we investigated this issue from an experimental point of view as well as in terms of modeling the water transport. We used the gravimetric technique to monitor water uptake by epoxy samples, with several thicknesses exposed to different levels of humidity during absorption and desorption tests. Our results revealed that the polymer displays a two-stage behavior with a residual amount of water that is desorbed progressively. We proposed a phenomenological reaction-diffusion scheme to describe this behavior. The model describes water transport as a competition between diffusion and the reaction, during which the local diffusivity and solubility depend on the local advancement of the reaction. We then implemented our model using COMSOL Multiphysics and identified it using a MATLAB-COMSOL optimization tool and the experimental data. We discussed the relation between the hydrophilicity of the product of the reaction and the diffusion behavior. We examined the reaction-induced modification of the water concentration field. It is worth noting that part of the phenomenology can be explained by the presence of hydrolyzable groups. © 2012 Elsevier Ltd. All rights reserved.
A general adjoint Monte Carlo-forward discrete ordinates radiation transport calculational scheme has been created to study the effects of the radiation environment in Hiroshima and Nagasaki due to the bombing of these two cities. Various such studies for comparison with physical data have progressed since the end of World War II with advancements in computing machinery and computational methods. These efforts have intensified in the last several years with the U.S.-Japan joint reassessment of nuclear weapons dosimetry in Hiroshima and Nagasaki. Three principal areas of investigation are: (1) to determine by experiment and calculation the neutron and gamma-ray energy and angular spectra and total yield of the two weapons; (2) using these weapons descriptions as source terms, to compute radiation effects at several locations in the two cities for comparison with experimental data collected at various times after the bombings and thus validate the source terms; and (3) to compute radiation fields at the known locations of fatalities and surviving individuals at the time of the bombings and thus establish an absolute cause-and-effect relationship between the radiation received and the resulting injuries to these individuals and any of their descendants as indicated by their medical records. It is in connection with the second and third items, the determination of the radiation effects and the dose received by individuals, that the current study is concerned
Shielding calculations of advanced nuclear facilities such as accelerator based neutron sources or fusion devices of the tokamak type are complicated due to their complex geometries and their large dimensions, including bulk shields of several meters thickness. While the complexity of the geometry in the shielding calculation can be hardly handled by the discrete ordinates method, the deep penetration of radiation through bulk shields is a severe challenge for the Monte Carlo particle transport simulation technique. This work proposes a dedicated computational approach for coupled Monte Carlo - deterministic transport calculations to handle this kind of shielding problems. The Monte Carlo technique is used to simulate the particle generation and transport in the target region with both complex geometry and reaction physics, and the discrete ordinates method is used to treat the deep penetration problem in the bulk shield. To enable the coupling of these two different computational methods, a mapping approach has been developed for calculating the discrete ordinates angular flux distribution from the scored data of the Monte Carlo particle tracks crossing a specified surface. The approach has been implemented in an interface program and validated by means of test calculations using a simplified three-dimensional geometric model. Satisfactory agreement was obtained for the angular fluxes calculated by the mapping approach using the MCNP code for the Monte Carlo calculations and direct three-dimensional discrete ordinates calculations using the TORT code. In the next step, a complete program system has been developed for coupled three-dimensional Monte Carlo deterministic transport calculations by integrating the Monte Carlo transport code MCNP, the three-dimensional discrete ordinates code TORT and the mapping interface program. Test calculations with two simple models have been performed to validate the program system by means of comparison calculations using the
Halder, Subhadeep; Dirmeyer, Paul A.; Saha, Subodh Kumar
2015-09-01
A relatively simple land surface model, the Biosphere-Atmosphere Transfer Scheme (BATS) and the more complex Community Land Model (CLM3.5) coupled to RegCM4 are used to investigate land-atmosphere feedback processes during the Indian summer monsoon. Model simulations for 27 years show that the mean and interannual variability of rainfall and surface air temperature are affected significantly due to differences in the formulation of evapotranspiration and hydrological processes between BATS and CLM3.5, prescribed land use, land cover data and changes in net radiation. RegCM4 with CLM3.5 (RCLM) shows a reduction in surface moisture flux and precipitation but an increase in surface air temperature over most parts of India as compared to RegCM4 with BATS (RBAT). In terms of the mean and interannual variability of rainfall over central India, RBAT performs better than RCLM. Evapotranspiration over central India is found to be less (more) sensitive to soil wetness variations in RCLM (RBAT) compared to the multimodel estimate from the Global Soil Wetness Project, that is mainly attributed to the differences in ground evaporation and transpiration. Changes in evaporation efficiency between the models also lead to a reduction in the land-atmosphere coupling strength for precipitation in RCLM. Furthermore, such changes decrease the convective instability over central and eastern India in RCLM leading to weakened convection, reduced large-scale moisture convergence and precipitation over land. Observations of soil moisture, surface fluxes, and radiation are needed for better understanding and improvement of coupled land-atmosphere feedbacks in models during the Indian summer monsoon.
Vertically aligned nanostructure scanning probe microscope tips
Guillorn, Michael A.; Ilic, Bojan; Melechko, Anatoli V.; Merkulov, Vladimir I.; Lowndes, Douglas H.; Simpson, Michael L.
2006-12-19
Methods and apparatus are described for cantilever structures that include a vertically aligned nanostructure, especially vertically aligned carbon nanofiber scanning probe microscope tips. An apparatus includes a cantilever structure including a substrate including a cantilever body, that optionally includes a doped layer, and a vertically aligned nanostructure coupled to the cantilever body.
Aligning molecules with intense nonresonant laser fields
Larsen, J.J.; Safvan, C.P.; Sakai, H.;
1999-01-01
Molecules in a seeded supersonic beam are aligned by the interaction between an intense nonresonant linearly polarized laser field and the molecular polarizability. We demonstrate the general applicability of the scheme by aligning I2, ICl, CS2, CH3I, and C6H5I molecules. The alignment is probed by...... mass selective two dimensional imaging of the photofragment ions produced by femtosecond laser pulses. Calculations on the degree of alignment of I2 are in good agreement with the experiments. We discuss some future applications of laser aligned molecules....
Beyond Alignment: Applying Systems Thinking to Architecting Enterprises is a comprehensive reader about how enterprises can apply systems thinking in their enterprise architecture practice, for business transformation and for strategic execution. The book's contributors find that systems thinking...... is a valuable way of thinking about the viable enterprise and how to architect it....
Calder, J
1997-01-01
The increasing availability of corpora annotated for linguistic structure prompts the question: if we have the same texts, annotated for phrase structure under two different schemes, to what extent do the annotations agree on structuring within the text? We suggest the term tree alignment to indicate the situation where two markup schemes choose to bracket off the same text elements. We propose a general method for determining agreement between two analyses. We then describe an efficient implementation, which is also modular in that the core of the implementation can be reused regardless of the format of markup used in the corpora. The output of the implementation on the Susanne and Penn treebank corpora is discussed.
Wu, Y.; Verseghy, D. L.; Melton, J. R.
2015-11-01
Peatlands, which contain large carbon stocks that must be accounted for in the global carbon budget, are poorly represented in many earth system models. We integrated peatlands into the coupled Canadian Land Surface Scheme (CLASS) and the Canadian Terrestrial Ecosystem Model (CTEM), which together simulate the fluxes of water, energy and CO2 at the land surface-atmosphere boundary in the family of Canadian Earth System Models (CanESMs). New components and algorithms were added to represent the unique features of peatlands, such as their characteristic ground floor vegetation (mosses), the slow decomposition of carbon in the water-logged soils and the interaction between the water, energy and carbon cycles. This paper presents the modifications introduced into the CLASS-CTEM modelling framework together with site-level evaluations of the model performance for simulated water, energy and carbon fluxes at eight different peatland sites. The simulated daily gross primary production and ecosystem respiration are well correlated with observations, with values of the Pearson correlation coefficient higher than 0.8 and 0.75 respectively. The simulated mean annual net ecosystem production at the eight test sites is 87 g C m-2 yr-1, which is 22 g C m-2 yr-1 higher than the observed annual mean. The general peatland model compares well with other site-level and regional-level models for peatlands, and is able to represent bogs and fens under a range of climatic and geographical conditions.
Dowell, Larry Jonathan
2014-04-22
Disclosed is a method and device for aligning at least two digital images. An embodiment may use frequency-domain transforms of small tiles created from each image to identify substantially similar, "distinguishing" features within each of the images, and then align the images together based on the location of the distinguishing features. To accomplish this, an embodiment may create equal sized tile sub-images for each image. A "key" for each tile may be created by performing a frequency-domain transform calculation on each tile. A information-distance difference between each possible pair of tiles on each image may be calculated to identify distinguishing features. From analysis of the information-distance differences of the pairs of tiles, a subset of tiles with high discrimination metrics in relation to other tiles may be located for each image. The subset of distinguishing tiles for each image may then be compared to locate tiles with substantially similar keys and/or information-distance metrics to other tiles of other images. Once similar tiles are located for each image, the images may be aligned in relation to the identified similar tiles.
Harmonic Analysis of Linac Alignment
McCrady, Rodney C
2005-01-01
We have analyzed the requirements on alignment of the focusing elements (quadrupole doublets) in the Los Alamos Neutron Science Center (LANSCE) side coupled linac. The analysis is performed in terms of harmonics of the quardrupole spacing. This allows us to determine the effect of intentional deviations from a straight line, such as following the curvature of the Earth, and of unintentional deviations introduced by measurement and alignment errors. Results are compared to measured positions of the doublets.
一种耦合短路线加载的圆极化天线方案%A circularly polarized antenna scheme coupled with short route
陈智达; 廖林; 彭顺全
2016-01-01
提出在微带贴片辐射面上加载等长耦合短路线获得小型化或者小介电常数的圆极化微带天线设计方案，设计了两款双馈的北斗B3天线验证了该方法的有效性。HFSS仿真结果表明，该天线工作于1.268 GHz，单元应用于北斗自适应阵内，底盘尺寸直径为220 mm，传统天线采用50×50，ε=10的介质板，增益为5.7 dB。本设计方案1采用35×35，ε=10的介质板，增益6.0 dB，尺寸压缩了30%；方案2采用50×50，ε=6的介质板，增益为7.1 dB。介电常数减少了40%。与传统的微带圆极化天线相比，该设计方案可以根据实际选用更高增益的天线方案以及更小尺寸的天线方案。%In this paper, circularly polarized microstrip patch antenna has been widely used in wireless communications. As loading on the coupling short of microstrip patch radiating long line to get circular polarization microstrip antenna design miniaturization or a small dielectric constant, is proposed two double-fed antenna Compass B3 is designed to verify the effectiveness. HFSS simulation results show that the antenna in 1.268GHz, unit applies adaptive array within Compass, chassis size diameter of 220mm, a traditional antenna is 50 ×50,ε= dielectric plate 10, a gain of 5.7 dB. The design uses a 35×35,ε= dielectric plate 10, the gain 6.0 dB, size 30% compression; Scheme 2 using the dielectric plate 50 ×50,ε= 6, the gain is 7.1 dB reduced dielectric constant 40%. Compared with the conventional circular polarization microstrip antenna, the design can be chosen according to the actual programs and higher gain antenna with smaller size antenna scheme.
Bai, Cheng-Hua; Wang, Dong-Yang; Hu, Shi; Cui, Wen-Xue; Jiang, Xin-Xin; Wang, Hong-Fu
2016-04-01
We propose a deterministic scheme to implement the multiqubit controlled-NOT gate of photons and multiqubit controlled-phase gate of electron spins with one control qubit and multiple target qubits using quantum dots in double-sided optical cavities. The scheme is based on spin selective photon reflection from the cavity and can be achieved in a nondestructive way. We assess the feasibility of the scheme and show that the gates can be implemented with high average fidelities by choosing the realistic system parameters appropriately. The scheme is useful in quantum information processing such as entanglement preparation, quantum error correction, and quantum algorithms.
Indirect visual cryptography scheme
Yang, Xiubo; Li, Tuo; Shi, Yishi
2015-10-01
Visual cryptography (VC), a new cryptographic scheme for image. Here in encryption, image with message is encoded to be N sub-images and any K sub-images can decode the message in a special rules (N>=2, 2images are printed on transparency and stacked exactly, the message of original image will be decrypted by human visual system, but any K-1 of them get no information about it. This cryptographic scheme can decode concealed images without any cryptographic computations, and it has high security. But this scheme lacks of hidden because of obvious feature of sub-images. In this paper, we introduce indirect visual cryptography scheme (IVCS), which encodes sub-images to be pure phase images without visible strength based on encoding of visual cryptography. The pure phase image is final ciphertexts. Indirect visual cryptography scheme not only inherits the merits of visual cryptography, but also raises indirection, hidden and security. Meanwhile, the accuracy alignment is not required any more, which leads to the strong anti-interference capacity and robust in this scheme. System of decryption can be integrated highly and operated conveniently, and its process of decryption is dynamic and fast, which all lead to the good potentials in practices.
R-Coffee: a method for multiple alignment of non-coding RNA
Wilm, Andreas; Desmond G Higgins; Notredame, Cédric
2008-01-01
R-Coffee is a multiple RNA alignment package, derived from T-Coffee, designed to align RNA sequences while exploiting secondary structure information. R-Coffee uses an alignment-scoring scheme that incorporates secondary structure information within the alignment. It works particularly well as an alignment improver and can be combined with any existing sequence alignment method. In this work, we used R-Coffee to compute multiple sequence alignments combining the pairwise output of sequence al...
王志春; 韩建伟
2013-01-01
离心式压缩机组在安装和维修过程中自始至终存在着联轴器找正对中问题，联轴器对中精度的高低对机组运行状况、生产效率有着重大的影响。从联轴器类型及安装质量和检测仪器仪表精度、质量等9个方面，来阐述离心压缩机组联轴器找正对中精度的影响因素。%There is a problem of shaft coupling alignment accuracy in complete installation and maintenance procedure of centrifugal compressors, the problem has significant effect on operation and production efficiency of the centrifugal compressors. In this article, influencing factors of shaft coupling alignment accuracy of centrifugal compressors were analyzed from nine aspects.
Shen, Jinmei; Arritt, R.W. [Iowa State Univ., Ames, IA (United States)
1996-12-31
The importance of land-atmosphere interactions and biosphere in climate change studies has long been recognized, and several land-atmosphere interaction schemes have been developed. Among these, the Simple Biosphere scheme (SiB) of Sellers et al. and the Biosphere Atmosphere Transfer Scheme (BATS) of Dickinson et al. are two of the most widely known. The effects of GCM subgrid-scale inhomogeneities of surface properties in general circulation models also has received increasing attention in recent years. However, due to the complexity of land surface processes and the difficulty to prescribe the large number of parameters that determine atmospheric and soil interactions with vegetation, many previous studies and results seem to be contradictory. A GCM grid element typically represents an area of 10{sup 4}-10{sup 6} km{sup 2}. Within such an area, there exist variations of soil type, soil wetness, vegetation type, vegetation density and topography, as well as urban areas and water bodies. In this paper, we incorporate both BATS and SiB2 land surface process schemes into a nonhydrostatic, compressible version of AMBLE model (Atmospheric Model -- Boundary-Layer Emphasis), and compare the surface heat fluxes and mesoscale circulations calculated using the two schemes. 8 refs., 5 figs.
DNA Align Editor: DNA Alignment Editor Tool
The SNPAlignEditor is a DNA sequence alignment editor that runs on Windows platforms. The purpose of the program is to provide an intuitive, user-friendly tool for manual editing of multiple sequence alignments by providing functions for input, editing, and output of nucleotide sequence alignments....
Marcus G Heisler
Full Text Available Morphogenesis during multicellular development is regulated by intercellular signaling molecules as well as by the mechanical properties of individual cells. In particular, normal patterns of organogenesis in plants require coordination between growth direction and growth magnitude. How this is achieved remains unclear. Here we show that in Arabidopsis thaliana, auxin patterning and cellular growth are linked through a correlated pattern of auxin efflux carrier localization and cortical microtubule orientation. Our experiments reveal that both PIN1 localization and microtubule array orientation are likely to respond to a shared upstream regulator that appears to be biomechanical in nature. Lastly, through mathematical modeling we show that such a biophysical coupling could mediate the feedback loop between auxin and its transport that underlies plant phyllotaxis.
As part of the Danish RERTR Program, three fuel elements with LEU U3O8-Al fuel and three fuel elements with LEU U3Si2-Al fuel were manufactured by NUKEM for irradiation testing in the DR-3 reactor at the Risoe National Laboratory in Denmark. The inspection scheme for the elements with U3O8-Al fuel is presented here as an illustration only. The inspection scheme for the elements with U3Si2-Al fuel was very similar. In this example, all document numbers, drawing numbers, and form numbers have been deleted or replaced with a generic identification. (author)
Malgarinos, I.; Nikolopoulos, N.; Gavaises, M.
2015-01-01
This study presents the implementation of an interface sharpening scheme on the basis of the Volume of Fluid (VOF) method, as well as its application in a number of theoretical and real cases usually modelled in literature. More specifically, the solution of an additional sharpening equation along with the standard VOF model equations is proposed, offering the advantage of “restraining” interface numerical diffusion, while also keeping a quite smooth induced velocity field around the interfac...
Laser alignment of rotating equipment at PNL
Lateral vibration in direct-drive equipment is usually caused by misalignment. Over the years, because of the need to improve on techniques and ways of working more efficiently, various types of alignment methods have evolved. In the beginning, craftsmen used a straight-edge scale across the coupling with a feeler gauge measuring the misalignment error. This is still preferred today for aligning small couplings. The industry has since decided that alignment of large direct-drive equipment needed a more accurate type of instrumentation. Rim and face is another of the first alignment methods and is used on all sizes of equipment. A disadvantage of the rim and face method is that in most cases the coupling has to be disassembled. This can cause alignment problems when the coupling is reassembled. Also, the rim and face method is not fast enough to work satisfactorily on alignment of thermally hot equipment. Another concern is that the coupling has to be manufactured accurately for correct rim and face readings. Reverse dial alignment is an improvement over the rim and face method, and depending on the operator's experience, this method can be very accurate. A good training program along with field experience will bring the operator to a proper level of proficiency for a successful program. A hand-held computer with reverse dial calculations in memory is a must for job efficiency. An advantage over the rim and face method is that the coupling is not disassembled and remains locked together. Reverse dial instrumentation measures from both shaft center lines, rather than the coupling surface so the machining of the coupling during manufacture is not a major concern
A novel approach to multiple sequence alignment using hadoop data grids.
Sudha Sadasivam, G; Baktavatchalam, G
2010-01-01
Multiple alignment of protein sequences helps to determine evolutionary linkage and to predict molecular structures. The factors to be considered while aligning multiple sequences are speed and accuracy of alignment. Although dynamic programming algorithms produce accurate alignments, they are computation intensive. In this paper we propose a time efficient approach to sequence alignment that also produces quality alignment. The dynamic nature of the algorithm coupled with data and computational parallelism of hadoop data grids improves the accuracy and speed of sequence alignment. The principle of block splitting in hadoop coupled with its scalability facilitates alignment of very large sequences. PMID:21224205
A laser-based fiducial line for high-precision multipoint alignment system
The next generation of linear colliders is very demanding concerning the alignment tolerances of their components. For the CLIC project, the reference axis of the components will have to be pre-aligned within 10 μm at 1 sigma with respect to a straight line in a sliding window of 200 m. A solution based on stretched wires with wire positioning sensors has been proposed in order to fulfill the alignment requirements in the Conceptual Design Report of the project. This solution has some drawbacks and laser-based alternative solutions are under study in order to validate the wire solution and possibly replace it. A new proposal is introduced in this paper, using a laser beam over 150 m as a straight alignment reference, with the objective of having an uncertainty in the determination of its straightness within 10μm. Sensors coupled to the components to be aligned would provide after calibration the horizontal and vertical offsets with respect to the laser beam, within a few micrometers, in their coordinate system. The method is based on the laser beam space stabilization effect when a beam propagates in atmospheric air inside a pipe with standing acoustic wave. The principal schemes of corresponding optoelectronics devices and temperature stabilization solutions are also proposed, making probable the extension of the laser fiducial line up to a 500 m length.
A laser-based fiducial line for high-precision multipoint alignment system
The next generation of linear colliders is very demanding concerning the alignment tolerances of their components. For the CLIC project, the reference axis of the components will have to be pre-aligned within 10 µm at 1 sigma with respect to a straight line in a sliding window of 200 m. A solution based on stretched wires with wire positioning sensors has been proposed in order to fulfill the alignment requirements in the Conceptual Design Report of the project. This solution has some drawbacks and laser-based alternative solutions are under study in order to validate the wire solution and possibly replace it. A new proposal is introduced in this paper, using a laser beam over 150 m as a straight alignment reference, with the objective of having an uncertainty in the determination of its straightness within 10 µm. Sensors, coupled to the components to be aligned, would provide after calibration the horizontal and vertical offsets with respect to the laser beam, within a few micrometers, in their coordinate system. The method is based on the laser beam space stabilization effect when a beam propagates in atmospheric air inside a pipe with standing acoustic wave. The principal schemes of corresponding optoelectronics devices and temperature stabilization solutions are also proposed, making probable the extension of the laser fiducial line up to a 500 m length.
Wang, Jianhua; Hansen, Elo Harald
2003-01-01
polytetrafluoroethylene (PTFE) knotted reactor (KR), solvent extraction-back extraction and hydride/vapor generation. It also addresses a novel, robust approach, whereby the protocol of SI-LOV-bead injection (BI) on-line separation and pre-concentration of ultra-trace levels of metals by a renewable microcolumn is...... on-line matrix separation and pre-concentration of trace levels of metals with detection by ICP-MS. It highlights some of the frequently applied on-line, sample-pre-treatment schemes, including solid phase extraction (SPE), on-wall molecular sorption and precipitate/(co)-precipitate retention using a...
The GEM Detector projective alignment simulation system
Precision position knowledge (< 25 microns RMS) of the GEM Detector muon system at the Superconducting Super Collider Laboratory (SSCL) is an important physics requirement necessary to minimize sagitta error in detecting and tracking high energy muons that are deflected by the magnetic field within the GEM Detector. To validate the concept of the sagitta correction function determined by projective alignment of the muon detectors (Cathode Strip Chambers or CSCs), the basis of the proposed GEM alignment scheme, a facility, called the ''Alignment Test Stand'' (ATS), is being constructed. This system simulates the environment that the CSCs and chamber alignment systems are expected to experience in the GEM Detector, albeit without the 0.8 T magnetic field and radiation environment. The ATS experimental program will allow systematic study and characterization of the projective alignment approach, as well as general mechanical engineering of muon chamber mounting concepts, positioning systems and study of the mechanical behavior of the proposed 6 layer CSCs. The ATS will consist of a stable local coordinate system in which mock-ups of muon chambers (i.e., non-working mechanical analogs, representing the three superlayers of a selected barrel and endcap alignment tower) are implemented, together with a sufficient number of alignment monitors to overdetermine the sagitta correction function, providing a self-consistency check. This paper describes the approach to be used for the alignment of the GEM muon system, the design of the ATS, and the experiments to be conducted using the ATS
G.Gomez.
Since June of 2009, the muon alignment group has focused on providing new alignment constants and on finalizing the hardware alignment reconstruction. Alignment constants for DTs and CSCs were provided for CRAFT09 data reprocessing. For DT chambers, the track-based alignment was repeated using CRAFT09 cosmic ray muons and validated using segment extrapolation and split cosmic tools. One difference with respect to the previous alignment is that only five degrees of freedom were aligned, leaving the rotation around the local x-axis to be better determined by the hardware system. Similarly, DT chambers poorly aligned by tracks (due to limited statistics) were aligned by a combination of photogrammetry and hardware-based alignment. For the CSC chambers, the hardware system provided alignment in global z and rotations about local x. Entire muon endcap rings were further corrected in the transverse plane (global x and y) by the track-based alignment. Single chamber track-based alignment suffers from poor statistic...
G. Gomez and J. Pivarski
2011-01-01
Alignment efforts in the first few months of 2011 have shifted away from providing alignment constants (now a well established procedure) and focussed on some critical remaining issues. The single most important task left was to understand the systematic differences observed between the track-based (TB) and hardware-based (HW) barrel alignments: a systematic difference in r-φ and in z, which grew as a function of z, and which amounted to ~4-5 mm differences going from one end of the barrel to the other. This difference is now understood to be caused by the tracker alignment. The systematic differences disappear when the track-based barrel alignment is performed using the new “twist-free” tracker alignment. This removes the largest remaining source of systematic uncertainty. Since the barrel alignment is based on hardware, it does not suffer from the tracker twist. However, untwisting the tracker causes endcap disks (which are aligned ...
Alignment studies for the CERN linear collider
Transverse alignment tolerances of a few microns are required for the CERN Linear Collider (CLIC) in order to limit the emittance blow-up due to transversely deflecting wakefields to reasonable values. Such tight tolerances over long distances can only be obtained by beam-based active alignment systems using precision micromovers and beam position monitors. Development work being carried out at CERN on closed-loop controlled micron-displacement systems, micron-resolution beam position monitors, active optical pre-alignment schemes and beam blow-up computer simulations for given overall alignment tolerances using both one-to-one and dispersion-free correction algorithms is described. (Author) 11 figs., 8 refs
Robert K Bradley
2009-05-01
Full Text Available We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multiple alignments which are accompanied by estimates of the alignment accuracy and uncertainty for every column and character of the alignment--previously available only with alignment programs which use computationally-expensive Markov Chain Monte Carlo approaches--yet can align thousands of long sequences. Moreover, FSA utilizes an unsupervised query-specific learning procedure for parameter estimation which leads to improved accuracy on benchmark reference alignments in comparison to existing programs. The centroid alignment approach taken by FSA, in combination with its learning procedure, drastically reduces the amount of false-positive alignment on biological data in comparison to that given by other methods. The FSA program and a companion visualization tool for exploring uncertainty in alignments can be used via a web interface at http://orangutan.math.berkeley.edu/fsa/, and the source code is available at http://fsa.sourceforge.net/.
Bradley, Robert K; Roberts, Adam; Smoot, Michael; Juvekar, Sudeep; Do, Jaeyoung; Dewey, Colin; Holmes, Ian; Pachter, Lior
2009-05-01
We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multiple alignments which are accompanied by estimates of the alignment accuracy and uncertainty for every column and character of the alignment--previously available only with alignment programs which use computationally-expensive Markov Chain Monte Carlo approaches--yet can align thousands of long sequences. Moreover, FSA utilizes an unsupervised query-specific learning procedure for parameter estimation which leads to improved accuracy on benchmark reference alignments in comparison to existing programs. The centroid alignment approach taken by FSA, in combination with its learning procedure, drastically reduces the amount of false-positive alignment on biological data in comparison to that given by other methods. The FSA program and a companion visualization tool for exploring uncertainty in alignments can be used via a web interface at http://orangutan.math.berkeley.edu/fsa/, and the source code is available at http://fsa.sourceforge.net/. PMID:19478997
Laser action using non-coupled excitation and detection of microspheres made of Nd3+ doped barium–titanium–silicate glass has been demonstrated and measured. The microspheres have also been successfully deposited over Si3N4 strip waveguides with a SiO2 separation layer, thus enabling the laser emission extraction onto a CMOS compatible photonic circuit. The dynamics of the lasing wavelength and intensity has been studied as a function of the pump power and interpreted in terms of thermal effects generated through non-radiative recombination of the excited ions. (paper)
Martín, L. L.; Navarro-Urrios, D.; Ferrarese-Lupi, F.; Pérez-Rodríguez, C.; Martín, I. R.; J. Montserrat; Domínguez, Carlos; Garrido, Blas; N. Capuj
2013-01-01
Laser action using non-coupled excitation and detection of microspheres made of Nd3+ doped barium-titanium-silicate glass has been demonstrated and measured. The microspheres have also been successfully deposited over Si3N4 strip waveguides with a SiO2 separation layer, thus enabling the laser emission extraction onto a CMOS compatible photonic circuit. The dynamics of the lasing wavelength and intensity has been studied as a function of the pump power and interpreted in terms of thermal effe...
Martín, L. L.; Navarro-Urrios, D.; Ferrarese-Lupi, F.; Pérez-Rodríguez, C.; Martín, I. R.; Montserrat, J.; Dominguez, C.; Garrido, B.; Capuj, N.
2013-07-01
Laser action using non-coupled excitation and detection of microspheres made of Nd3+ doped barium-titanium-silicate glass has been demonstrated and measured. The microspheres have also been successfully deposited over Si3N4 strip waveguides with a SiO2 separation layer, thus enabling the laser emission extraction onto a CMOS compatible photonic circuit. The dynamics of the lasing wavelength and intensity has been studied as a function of the pump power and interpreted in terms of thermal effects generated through non-radiative recombination of the excited ions.
Lee, Jae-Seung; Regatte, Ravinder R; Jerschow, Alexej
2008-12-14
Optimal control theory is applied for enhancing the intensity of the central peak of a spin 3/2 signal in the presence of a residual quadrupolar coupling. While a maximum enhancement is always possible in the regime omega(rf) control and test these with (23)Na NMR in this regime. In addition to enhancing the intensity of the central transition signal, the satellite peaks can be effectively suppressed, which is a useful feature for the implementation in (23)Na imaging sequences. PMID:19071931
G.Gomez
2010-01-01
The main developments in muon alignment since March 2010 have been the production, approval and deployment of alignment constants for the ICHEP data reprocessing. In the barrel, a new geometry, combining information from both hardware and track-based alignment systems, has been developed for the first time. The hardware alignment provides an initial DT geometry, which is then anchored as a rigid solid, using the link alignment system, to a reference frame common to the tracker. The “GlobalPositionRecords” for both the Tracker and Muon systems are being used for the first time, and the initial tracker-muon relative positioning, based on the link alignment, yields good results within the photogrammetry uncertainties of the Tracker and alignment ring positions. For the first time, the optical and track-based alignments show good agreement between them; the optical alignment being refined by the track-based alignment. The resulting geometry is the most complete to date, aligning all 250 DTs, ...
Z. Szillasi and G. Gomez.
2013-01-01
When CMS is opened up, major components of the Link and Barrel Alignment systems will be removed. This operation, besides allowing for maintenance of the detector underneath, is needed for making interventions that will reinforce the alignment measurements and make the operation of the alignment system more reliable. For that purpose and also for their general maintenance and recalibration, the alignment components will be transferred to the Alignment Lab situated in the ISR area. For the track-based alignment, attention is focused on the determination of systematic uncertainties, which have become dominant, since now there is a large statistics of muon tracks. This will allow for an improved Monte Carlo misalignment scenario and updated alignment position errors, crucial for high-momentum muon analysis such as Z′ searches.
Asha K Pratinidhi
2013-10-01
Full Text Available Background: Since 2007, Satara district is implementing a voluntary conditional cash transfer scheme named “Second Honeymoon Package” (SHP for postponement of first pregnancy. This study was undertaken to evaluate it's effectiveness in preventing pregnancies, utilizing the years for learning or betterment in jobs. Cost-effectiveness analysis was undertaken from government's viewpoint and that from beneficiary's viewpoint. Objectives: To perform the economic evaluation of second honeymoon package programme from the perspective of beneficiaries and that of Government of Maharashtra during the defined time horizon. To determine the targets to be achieved so as to make the programme cost- effective. Materials and Methods: This was an evaluation study of a community based interventional programme. This study employed quasi-experimental study design. Economic evaluation was conducted from the perspective of Government of Maharashtra and that of beneficiaries'. Costs and consequences SHP were evaluated in comparison with those of routine family welfare programme. Sensitivity analysis was done using Treeage Pro® version 2009 software. Results: Cost for participation in programme was Rs. 965888/268 person years of productivity. Cost of not participating in the Second honeymoon programme but availing routine family planning services was Rs. 298902/133 person years gained. Rankings analysis showed that no strategies were clearly dominated by any other. Extended dominance report indicates no strategies were eliminated by extended dominance. Incremental cost-effectiveness ratio was Rs.4920/person year of productivity. Conclusions: The SHP is cost effective at high success and productivity rates. The success rate of postponement of first pregnancy was 51.4%. Postponement of pregnancy by 2 years provides 45% chances of productive utilization of time.
大规模场景流体模拟的耦合算法%A Couple Scheme for a Large-Scale Fluid Simulation
武小龙; 吴恩华; 张辉
2011-01-01
When simulating tsunami etc. , only around the place where the disaster occurs, full threedimension simulationis needed. At the other places, two-dimensional wave simulation can be used. To effectively use the computing resources for solving this kind of problem, a new algorithm based on the region coupling is proposed. By the algorithm, the whole computing region is divided into complex regions and simple regions, where the three-dimension Navier-Stokes simulation and two-dimension wave simulation are used respectively. Along the boundary of complex or simple regions, related variables are extrapolated from the other regions. As a result, the physical information can be exchanged between different regions and the computing regions are tightly coupled. Finally in this paper, an example of wave creation and propagation is given to show the feasibility of the algorithm.%针对在海啸等模拟中,只有在灾害发生的地点附近需要进行三维模拟,而其他区域可以使用二维的波函数进行流体模拟的问题,为了有效地利用计算资源,提出一种计算区域耦合的算法.该算法将计算区域划分为复杂区域和简单区域,分别使用三维Navier-Stokes方程和二维波函数进行模拟;在复杂(或简单)区域的边界处,根据其他区域的信息进行插值,从而在不同计算区域之间进行信息交换,使得不同区域在计算上紧密耦合.最后通过波浪生成和传播的例子,表明了文中算法的可行性和实用性.
The 'out-and-back' 3D HCP experiment, using gradient- and sensitivity-enhanced detection, provides a convenient method for assignment of the 31P NMR spectra and accurate measurement of the 31P chemical shifts of ribonucleic acids. The 13C resolution in such spectra can be doubled, at the cost of a 50% reduction in sensitivity, by combining 13C evolution during the 13C-31P de- and rephasing periods. The multiple connectivities observable for a given 31P, including correlations to the intranucleotide C5'H2 and C4'H groups, and the C2'H, C3'H and C4'H groups of the preceding nucleotide, permit independent measurements of the 31P shift. The 13C spectrum of these groups is typically crowded for an RNA molecule in isotropic solution and overlap becomes more problematic in media used to achieve partial alignment. However, many of these correlations are resolvable in the combined-evolution HCP spectrum. The difference in 31P chemical shift between isotropic solution and a medium containing liquid crystalline Pf1 provides information on the orientation of phosphate groups. The intensities measured in the 3D HCP spectrum, obtained for an isotropic sample, yield values for the 3JC2'P and 3JC4'P couplings, thereby providing important restraints for the backbone torsion angles ε and β. The experiments are illustrated for a uniformly 13C-enriched, 24-residue stem-loop RNA sequence, and results for the helical stem region show close agreement between observed Δδ(31P) values and those predicted for a model A-form RNA helix when using a uniform 31P CSA tensor. This confirms that Δδ(31P) values can be used directly as restraints in refining nucleic acid structures
Study and control of the alignment of the SILHI beam
The low energy line of the IPHI injector includes 2 couples of magnetic deflectors operating in 2 transverse directions. This work aims at assessing the capacity of these deflectors to collimate efficiently the beam in the RFQ (radio-frequency quadrupole) inlet. There are 4 main causes of mis-alignment : first, the misalignment of the line components such as the ECR source or the 2 solenoids; second, the earth magnetic field; third the non-linear and non-axisymmetric forces due to charge distribution inside the beam tend to break the beam's circular symmetry; and four, particle losses tend to shift the centre of mass of the beam. It appears that the power of the deflectors is sufficient, in the SILHI present scheme, to center the beam at the interface with RFQ. Moving away the 2 deflectors from each other will improve their efficiency. The alignment procedures are complex: setting first the solenoid fields before the deflectors' could make the task easier but an advanced automated algorithm seems necessary. (A.C.)
Bradley, Robert K.; Adam Roberts; Michael Smoot; Sudeep Juvekar; Jaeyoung Do; Colin Dewey; Ian Holmes; Lior Pachter
2009-01-01
We describe a new program for the alignment of multiple biological sequences that is both statistically motivated and fast enough for problem sizes that arise in practice. Our Fast Statistical Alignment program is based on pair hidden Markov models which approximate an insertion/deletion process on a tree and uses a sequence annealing algorithm to combine the posterior probabilities estimated from these models into a multiple alignment. FSA uses its explicit statistical model to produce multi...
Horizontal carbon nanotube alignment.
Cole, Matthew T; Cientanni, Vito; Milne, William I
2016-09-21
The production of horizontally aligned carbon nanotubes offers a rapid means of realizing a myriad of self-assembled near-atom-scale technologies - from novel photonic crystals to nanoscale transistors. The ability to reproducibly align anisotropic nanostructures has huge technological value. Here we review the present state-of-the-art in horizontal carbon nanotube alignment. For both in and ex situ approaches, we quantitatively assess the reported linear packing densities alongside the degree of alignment possible for each of these core methodologies. PMID:27546174
G.Gomez
2010-01-01
Most of the work in muon alignment since December 2009 has focused on the geometry reconstruction from the optical systems and improvements in the internal alignment of the DT chambers. The barrel optical alignment system has progressively evolved from reconstruction of single active planes to super-planes (December 09) to a new, full barrel reconstruction. Initial validation studies comparing this full barrel alignment at 0T with photogrammetry provide promising results. In addition, the method has been applied to CRAFT09 data, and the resulting alignment at 3.8T yields residuals from tracks (extrapolated from the tracker) which look smooth, suggesting a good internal barrel alignment with a small overall offset with respect to the tracker. This is a significant improvement, which should allow the optical system to provide a start-up alignment for 2010. The end-cap optical alignment has made considerable progress in the analysis of transfer line data. The next set of alignment constants for CSCs will there...
... Repairing Chipped Teeth Teeth Whitening Tooth-Colored Fillings Orthodontics and Aligners Straighten teeth for a healthier smile. Orthodontics When consumers think about orthodontics, braces are the ...
Finite-difference schemes for anisotropic diffusion
Es, Bram van, E-mail: es@cwi.nl [Centrum Wiskunde and Informatica, P.O. Box 94079, 1090GB Amsterdam (Netherlands); FOM Institute DIFFER, Dutch Institute for Fundamental Energy Research, Association EURATOM-FOM (Netherlands); Koren, Barry [Eindhoven University of Technology (Netherlands); Blank, Hugo J. de [FOM Institute DIFFER, Dutch Institute for Fundamental Energy Research, Association EURATOM-FOM (Netherlands)
2014-09-01
In fusion plasmas diffusion tensors are extremely anisotropic due to the high temperature and large magnetic field strength. This causes diffusion, heat conduction, and viscous momentum loss, to effectively be aligned with the magnetic field lines. This alignment leads to different values for the respective diffusive coefficients in the magnetic field direction and in the perpendicular direction, to the extent that heat diffusion coefficients can be up to 10{sup 12} times larger in the parallel direction than in the perpendicular direction. This anisotropy puts stringent requirements on the numerical methods used to approximate the MHD-equations since any misalignment of the grid may cause the perpendicular diffusion to be polluted by the numerical error in approximating the parallel diffusion. Currently the common approach is to apply magnetic field-aligned coordinates, an approach that automatically takes care of the directionality of the diffusive coefficients. This approach runs into problems at x-points and at points where there is magnetic re-connection, since this causes local non-alignment. It is therefore useful to consider numerical schemes that are tolerant to the misalignment of the grid with the magnetic field lines, both to improve existing methods and to help open the possibility of applying regular non-aligned grids. To investigate this, in this paper several discretization schemes are developed and applied to the anisotropic heat diffusion equation on a non-aligned grid.
Opportunistic Interference Alignment in MIMO Interference Channels
Perlaza, Samir Medina; Lasaulce, Samson; Chaufray, Jean Marie
2008-01-01
We present two interference alignment techniques such that an opportunistic point-to-point multiple input multiple output (MIMO) link can reuse, without generating any additional interference, the same frequency band of a similar pre-existing primary link. In this scenario, we exploit the fact that under power constraints, although each radio maximizes independently its rate by water-filling on their channel transfer matrix singular values, frequently, not all of them are used. Therefore, by aligning the interference of the opportunistic radio it is possible to transmit at a significant rate while insuring zero-interference on the pre-existing link. We propose a linear pre-coder for a perfect interference alignment and a power allocation scheme which maximizes the individual data rate of the secondary link. Our numerical results show that significant data rates are achieved even for a reduced number of antennas.
Gervasio Gomez
The main progress of the muon alignment group since March has been in the refinement of both the track-based alignment for the DTs and the hardware-based alignment for the CSCs. For DT track-based alignment, there has been significant improvement in the internal alignment of the superlayers inside the DTs. In particular, the distance between superlayers is now corrected, eliminating the residual dependence on track impact angles, and good agreement is found between survey and track-based corrections. The new internal geometry has been approved to be included in the forthcoming reprocessing of CRAFT samples. The alignment of DTs with respect to the tracker using global tracks has also improved significantly, since the algorithms use the latest B-field mapping, better run selection criteria, optimized momentum cuts, and an alignment is now obtained for all six degrees of freedom (three spatial coordinates and three rotations) of the aligned DTs. This work is ongoing and at a stage where we are trying to unders...
G.Gomez
2011-01-01
The Muon Alignment work now focuses on producing a new track-based alignment with higher track statistics, making systematic studies between the results of the hardware and track-based alignment methods and aligning the barrel using standalone muon tracks. Currently, the muon track reconstruction software uses a hardware-based alignment in the barrel (DT) and a track-based alignment in the endcaps (CSC). An important task is to assess the muon momentum resolution that can be achieved using the current muon alignment, especially for highly energetic muons. For this purpose, cosmic ray muons are used, since the rate of high-energy muons from collisions is very low and the event statistics are still limited. Cosmics have the advantage of higher statistics in the pT region above 100 GeV/c, but they have the disadvantage of having a mostly vertical topology, resulting in a very few global endcap muons. Only the barrel alignment has therefore been tested so far. Cosmic muons traversing CMS from top to bottom are s...
G. Gomez
Since December, the muon alignment community has focused on analyzing the data recorded so far in order to produce new DT and CSC Alignment Records for the second reprocessing of CRAFT data. Two independent algorithms were developed which align the DT chambers using global tracks, thus providing, for the first time, a relative alignment of the barrel with respect to the tracker. These results are an important ingredient for the second CRAFT reprocessing and allow, for example, a more detailed study of any possible mis-modelling of the magnetic field in the muon spectrometer. Both algorithms are constructed in such a way that the resulting alignment constants are not affected, to first order, by any such mis-modelling. The CSC chambers have not yet been included in this global track-based alignment due to a lack of statistics, since only a few cosmics go through the tracker and the CSCs. A strategy exists to align the CSCs using the barrel as a reference until collision tracks become available. Aligning the ...
Plasmonic Properties of Vertically Aligned Nanowire Arrays
Hua Qi
2012-01-01
Full Text Available Nanowires (NWs/Ag sheath composites were produced to investigate plasmonic coupling between vertically aligned NWs for surface-enhanced Raman scattering (SERS applications. In this investigation, two types of vertical NW arrays were studied; those of ZnO NWs grown on nanosphere lithography patterned sapphire substrate via vapor-liquid-solid (VLS mechanism and Si NW arrays produced by wet chemical etching. Both types of vertical NW arrays were coated with a thin layer of silver by electroless silver plating for SERS enhancement studies. The experimental results show extremely strong SERS signals due to plasmonic coupling between the NWs, which was verified by COMSOL electric field simulations. We also compared the SERS enhancement intensity of aligned and random ZnO NWs, indicating that the aligned NWs show much stronger and repeatable SERS signal than those grown in nonaligned geometries.
G. Gomez
2011-01-01
A new set of muon alignment constants was approved in August. The relative position between muon chambers is essentially unchanged, indicating good detector stability. The main changes concern the global positioning of the barrel and of the endcap rings to match the new Tracker geometry. Detailed studies of the differences between track-based and optical alignment of DTs have proven to be a valuable tool for constraining Tracker alignment weak modes, and this information is now being used as part of the alignment procedure. In addition to the “split-cosmic” analysis used to investigate the muon momentum resolution at high momentum, a new procedure based on reconstructing the invariant mass of di-muons from boosted Zs is under development. Both procedures show an improvement in the momentum precision of Global Muons with respect to Tracker-only Muons. Recent developments in track-based alignment include a better treatment of the tails of residual distributions and accounting for correla...
Scheme Program Documentation Tools
Nørmark, Kurt
2004-01-01
This paper describes and discusses two different Scheme documentation tools. The first is SchemeDoc, which is intended for documentation of the interfaces of Scheme libraries (APIs). The second is the Scheme Elucidator, which is for internal documentation of Scheme programs. Although the tools ar...
Splitting schemes for poroelasticity and thermoelasticity problems
Kolesov, A. E.; Vabishchevich, P. N.; Vasilyeva, M. V.
2013-01-01
In this work, we consider the coupled systems of linear unsteady partial differential equations, which arise in the modeling of poroelasticity processes. Stability estimates of weighted difference schemes for the coupled system of equations are presented. Approximation in space is based on the finite element method. We construct splitting schemes and give some numerical comparisons for typical poroelasticity problems. The results of numerical simulation of a 3D problem are presented. Special ...
Cooled Storage Ring of Heavy Ion Research Facility in Lanzhou (HIRFL-CSR) belongs to China great scientific project in China. The alignment for it is very difficult because of very large area and very high accuracy. For the special case in HIRFL-CSR, some new methods and new instruments are used, including the construction of survey control network, the usage of laser tracker, and CSR alignment database system with applications developed to store and analyze data. The author describes the whole procedure of CSR alignment
Galaxy alignments: An overview
Joachimi, Benjamin; Kitching, Thomas D; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Hoekstra, Henk; Kiessling, Alina; Kirk, Donnacha; Rassat, Anais
2015-01-01
The alignments between galaxies, their underlying matter structures, and the cosmic web constitute vital ingredients for a comprehensive understanding of gravity, the nature of matter, and structure formation in the Universe. We provide an overview on the state of the art in the study of these alignment processes and their observational signatures, aimed at a non-specialist audience. The development of the field over the past one hundred years is briefly reviewed. We also discuss the impact of galaxy alignments on measurements of weak gravitational lensing, and discuss avenues for making theoretical and observational progress over the coming decade.
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Martin, A. C. R.
2014-01-01
The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI li...
Blazek, Jonathan; Seljak, Uroš
2015-01-01
We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used "nonlinear alignment model," finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between ...
G.Gomez
Since September, the muon alignment system shifted from a mode of hardware installation and commissioning to operation and data taking. All three optical subsystems (Barrel, Endcap and Link alignment) have recorded data before, during and after CRAFT, at different magnetic fields and during ramps of the magnet. This first data taking experience has several interesting goals: • study detector deformations and movements under the influence of the huge magnetic forces; • study the stability of detector structures and of the alignment system over long periods, • study geometry reproducibility at equal fields (specially at 0T and 3.8T); • reconstruct B=0T geometry and compare to nominal/survey geometries; • reconstruct B=3.8T geometry and provide DT and CSC alignment records for CMSSW. However, the main goal is to recons...
S. Szillasi
2013-01-01
The CMS detector has been gradually opened and whenever a wheel became exposed the first operation was the removal of the MABs, the sensor structures of the Hardware Barrel Alignment System. By the last days of June all 36 MABs have arrived at the Alignment Lab at the ISR where, as part of the Alignment Upgrade Project, they are refurbished with new Survey target holders. Their electronic checkout is on the way and finally they will be recalibrated. During LS1 the alignment system will be upgraded in order to allow more precise reconstruction of the MB4 chambers in Sector 10 and Sector 4. This requires new sensor components, so called MiniMABs (pictured below), that have already been assembled and calibrated. Image 6: Calibrated MiniMABs are ready for installation For the track-based alignment, the systematic uncertainties of the algorithm are under scrutiny: this study will enable the production of an improved Monte Carlo misalignment scenario and to update alignment position errors eventually, crucial...
Bensinger, J R
2005-01-01
To align the endcap muon chambers of the ATLAS experiment, an optical grid is set up between aluminum “alignment bars” nested in each layer of chambers. Optical lines are made of laser diodes and CCD cameras that form an alignment grid. The alignment bars are self-aligning. They are then carefully measured using a large coordinate measuring machine (CMM). The subsequent shape changes of the bar are determined by calculations that are corrected by the readings of the internal monitors. The relationship between the bars is then established by a network of sensors that measure the bearing angle of light sources on the other parts of the system. The system is over-determined and the location and orientation of each bar is determined using a fitting program. Chambers are then referenced to the alignment grid using proximity sensors. This information is used to provide corrections to the nominal chamber positions before calculating track momentum. The performance of the system has been validated in a test beam ...
G. Gomez
2012-01-01
A new muon alignment has been produced for 2012 A+B data reconstruction. It uses the latest Tracker alignment and single-muon data samples to align both DTs and CSCs. Physics validation has been performed and shows a modest improvement in stand-alone muon momentum resolution in the barrel, where the alignment is essentially unchanged from the previous version. The reference-target track-based algorithm using only collision muons is employed for the first time to align the CSCs, and a substantial improvement in resolution is observed in the endcap and overlap regions for stand-alone muons. This new alignment is undergoing the approval process and is expected to be deployed as part of a new global tag in the beginning of December. The pT dependence of the φ-bias in curvature observed in Monte Carlo was traced to a relative vertical misalignment between the Tracker and barrel muon systems. Moving the barrel as a whole to match the Tracker cures this pT dependence, leaving only the &phi...
Simulation study of three-dimensional laser cooling schemes for fast stored beams
Molecular dynamics (MD) approach is employed to study laser cooling of fast circulating beams in a storage ring. The authors compare several three-dimensional (3D) cooling methods, examining achievable minimum beam temperature. In particular, the stress is put upon the three coupling schemes, i.e. the dispersion-coupling scheme, the coupling-cavity scheme, and the tapered cooling scheme. The authors show that beam temperatures much lower than the currently achievable level could be reached with these schemes
Simulation study of three-dimensional laser cooling schemes for fast stored beams
Molecular dynamics (MD) approach is employed to study laser cooling of fast circulating beams in a storage ring. The authors compare several three-dimensional (3D) cooling methods, examining achievable minimum beam temperature. In particular, the stress is put upon the three coupling schemes, i.e., the dispersion-coupling scheme, the coupling-cavity scheme, and the tapered cooling scheme. They show that beam temperatures much lower than the currently possible level could be reached with these schemes
Curriculum Alignment Research Suggests that Alignment Can Improve Student Achievement
Squires, David
2012-01-01
Curriculum alignment research has developed showing the relationship among three alignment categories: the taught curriculum, the tested curriculum and the written curriculum. Each pair (for example, the taught and the written curriculum) shows a positive impact for aligning those results. Following this, alignment results from the Third…
Subranging scheme for SQUID sensors
Penanen, Konstantin I. (Inventor)
2008-01-01
A readout scheme for measuring the output from a SQUID-based sensor-array using an improved subranging architecture that includes multiple resolution channels (such as a coarse resolution channel and a fine resolution channel). The scheme employs a flux sensing circuit with a sensing coil connected in series to multiple input coils, each input coil being coupled to a corresponding SQUID detection circuit having a high-resolution SQUID device with independent linearizing feedback. A two-resolution configuration (course and fine) is illustrated with a primary SQUID detection circuit for generating a fine readout, and a secondary SQUID detection circuit for generating a course readout, both having feedback current coupled to the respective SQUID devices via feedback/modulation coils. The primary and secondary SQUID detection circuits function and derive independent feedback. Thus, the SQUID devices may be monitored independently of each other (and read simultaneously) to dramatically increase slew rates and dynamic range.
MaxAlign: maximizing usable data in an alignment
Pedersen Anders G; Sackett Peter W; Gouveia-Oliveira Rodrigo
2007-01-01
Abstract Background The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for instance, gapped columns are often discarded entirely from the alignment. Results MaxAlign is a program that optimizes the alignment prior to such analyses. Specifically, it maximizes the number of nucleotide (or amino acid) symbols that are present in gap-free columns – the alignment area – by selecting the ...
G. Gomez
2010-01-01
For the last three months, the Muon Alignment group has focussed on providing a new, improved set of alignment constants for the end-of-year data reprocessing. These constants were delivered on time and approved by the CMS physics validation team on November 17. The new alignment incorporates several improvements over the previous one from March for nearly all sub-systems. Motivated by the loss of information from a hardware failure in May (an entire MAB was lost), the optical barrel alignment has moved from a modular, super-plane reconstruction, to a full, single loop calculation of the entire geometry for all DTs in stations 1, 2 and 3. This makes better use of the system redundancy, mitigating the effect of the information loss. Station 4 is factorised and added afterwards to make the system smaller (and therefore faster to run), and also because the MAB calibration at the MB4 zone is less precise. This new alignment procedure was tested at 0 T against photogrammetry resulting in precisions of the order...
Alignment telescope for Antares
The Antares Automatic Alignment System employs a specially designed telescope for alignment of its laser beamlines. There are two telescopes in the system, and since each telescope is a primary alignment reference, stringent boresight accuracy and stability over the focus range were required. Optical and mechanical designs, which meet this requirement as well as that of image quality over a wide wavelength band, are described. Special test techniques for initial assembly and alignment of the telescope are also presented. The telescope, which has a 180-mm aperture FK51-KZF2 type glass doublet objective, requires a boresight accuracy of 2.8 μrad at two focal lengths, and object distances between 11 meters and infinity. Travel of a smaller secondary doublet provides focus from 11 m to infinity with approximately 7.8 m effective focal length. By flipping in a third doublet, the effective focal length is reduced to 2.5 m. Telescope alignment was accomplished by using a rotary air bearing to establish an axis in front of the system and placing the focus of a Laser Unequal Path Interferometer (LUPI) at the image plane
Gervasio Gomez
2012-01-01
The new alignment for the DT chambers has been successfully used in physics analysis starting with the 52X Global Tag. The remaining main areas of development over the next few months will be preparing a new track-based CSC alignment and producing realistic APEs (alignment position errors) and MC misalignment scenarios to match the latest muon alignment constants. Work on these items has been delayed from the intended timeline, mostly due to a large involvement of the muon alignment man-power in physics analyses over the first half of this year. As CMS keeps probing higher and higher energies, special attention must be paid to the reconstruction of very-high-energy muons. Recent muon POG reports from mid-June show a φ-dependence in curvature bias in Monte Carlo samples. This bias is observed already at the tracker level, where it is constant with muon pT, while it grows with pT as muon chamber information is added to the tracks. Similar studies show a much smaller effect in data, at le...
M. Dallavalle
2013-01-01
A new Muon misalignment scenario for 2011 (7 TeV) Monte Carlo re-processing was re-leased. The scenario is based on running of standard track-based reference-target algorithm (exactly as in data) using single-muon simulated sample (with the transverse-momentum spectrum matching data). It used statistics similar to what was used for alignment with 2011 data, starting from an initially misaligned Muon geometry from uncertainties of hardware measurements and using the latest Tracker misalignment geometry. Validation of the scenario (with muons from Z decay and high-pT simulated muons) shows that it describes data well. The study of systematic uncertainties (dominant by now due to huge amount of data collected by CMS and used for muon alignment) is finalised. Realistic alignment position errors are being obtained from the estimated uncertainties and are expected to improve the muon reconstruction performance. Concerning the Hardware Alignment System, the upgrade of the Barrel Alignment is in progress. By now, d...
Iguchi, T.; Nakajima, T.; Khain, A. P.; Saito, K.; Takemura, T.; Okamoto, H.; Nishizawa, T.; Tao, W.-K.
2012-01-01
Equivalent radar reflectivity factors (Ze) measured by W-band radars are directly compared with the corresponding values calculated from a three-dimensional non-hydrostatic meso-scale model coupled with a spectral-bin-microphysical (SBM) scheme for cloud. Three case studies are the objects of this research: one targets a part of ship-borne observation using 95 GHz Doppler radar over the Pacific Ocean near Japan in May 2001; other two are aimed at two short segments of space-borne observation by the cloud profiling radar on CloudSat in November 2006. The numerical weather prediction (NWP) simulations reproduce general features of vertical structures of Ze and Doppler velocity. A main problem in the reproducibility is an overestimation of Ze in ice cloud layers. A frequency analysis shows a strong correlation between ice water contents (IWC) and Ze in the simulation; this characteristic is similar to those shown in prior on-site studies. From comparing with the empirical correlations by the prior studies, the simulated Ze is overestimated than the corresponding values in the studies at the same IWC. Whereas the comparison of Doppler velocities suggests that large-size snowflakes are necessary for producing large velocities under the freezing level and hence rules out the possibility that an overestimation of snow size causes the overestimation of Ze. Based on the results of several sensitivity tests, we conclude that the source of the overestimation is a bias in the microphysical calculation of Ze or an overestimation of IWC. To identify the source of the problems needs further validation research with other follow-up observations.
The CMS Tracker Alignment Strategy
Weber, Martin
2006-01-01
CMS silicon Tracker alignment consists of three key components: Survey during tracker construction, measurements with the Laser Alignment System during operation and track based alignment. Methods and results are explained in detail, with a special focus on track based alignment due to its enormous complexity and numerical challenges.
RNA Structural Alignments, Part I
Havgaard, Jakob Hull; Gorodkin, Jan
Simultaneous alignment and secondary structure prediction of RNA sequences is often referred to as "RNA structural alignment." A class of the methods for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and aligns...
LevelScheme: A level scheme drawing and scientific figure preparation system for Mathematica
Caprio, M. A.
2005-01-01
LevelScheme is a scientific figure preparation system for Mathematica. The main emphasis is upon the construction of level schemes, or level energy diagrams, as used in nuclear, atomic, molecular, and hadronic physics. LevelScheme also provides a general infrastructure for the preparation of publication-quality figures, including support for multipanel and inset plotting, customizable tick mark generation, and various drawing and labeling tasks. Coupled with Mathematica's plotting functions a...
MUSE optical alignment procedure
Laurent, Florence; Renault, Edgard; Loupias, Magali; Kosmalski, Johan; Anwand, Heiko; Bacon, Roland; Boudon, Didier; Caillier, Patrick; Daguisé, Eric; Dubois, Jean-Pierre; Dupuy, Christophe; Kelz, Andreas; Lizon, Jean-Louis; Nicklas, Harald; Parès, Laurent; Remillieux, Alban; Seifert, Walter; Valentin, Hervé; Xu, Wenli
2012-09-01
MUSE (Multi Unit Spectroscopic Explorer) is a second generation VLT integral field spectrograph (1x1arcmin² Field of View) developed for the European Southern Observatory (ESO), operating in the visible wavelength range (0.465-0.93 μm). A consortium of seven institutes is currently assembling and testing MUSE in the Integration Hall of the Observatoire de Lyon for the Preliminary Acceptance in Europe, scheduled for 2013. MUSE is composed of several subsystems which are under the responsibility of each institute. The Fore Optics derotates and anamorphoses the image at the focal plane. A Splitting and Relay Optics feed the 24 identical Integral Field Units (IFU), that are mounted within a large monolithic instrument mechanical structure. Each IFU incorporates an image slicer, a fully refractive spectrograph with VPH-grating and a detector system connected to a global vacuum and cryogenic system. During 2011, all MUSE subsystems were integrated, aligned and tested independently in each institute. After validations, the systems were shipped to the P.I. institute at Lyon and were assembled in the Integration Hall This paper describes the end-to-end optical alignment procedure of the MUSE instrument. The design strategy, mixing an optical alignment by manufacturing (plug and play approach) and few adjustments on key components, is presented. We depict the alignment method for identifying the optical axis using several references located in pupil and image planes. All tools required to perform the global alignment between each subsystem are described. The success of this alignment approach is demonstrated by the good results for the MUSE image quality. MUSE commissioning at the VLT (Very Large Telescope) is planned for 2013.
Strategic Alignment of Business Intelligence
Cederberg, Niclas
2010-01-01
This thesis is about the concept of strategic alignment of business intelligence. It is based on a theoretical foundation that is used to define and explain business intelligence, data warehousing and strategic alignment. By combining a number of different methods for strategic alignment a framework for alignment of business intelligence is suggested. This framework addresses all different aspects of business intelligence identified as relevant for strategic alignment of business intelligence...
The Relativistic Heavy Ion Collider consists of two interlaced plane rings, a pair of mirror-symmetric beam injection arcs, a spatially curved beam transfer line from the Alternating Gradient Synchrotron, and a collection of precisely positioned and aligned magnets, on appropriately positioned support stands, threaded on those arcs. RHIC geometry is defined by six beam crossing points exactly in a plane, lying precisely at the vertices of a regular hexagon of specified size position and orientation of this hexagon are defined geodetically. Survey control and alignment procedures, currently in use to construct RHIC, are described
Large Telescope Segmented Primary Mirror Alignment
Rud, Mayer
2010-01-01
A document discusses a broadband (white light) point source, located at the telescope Cassegrain focus, which generates a cone of light limited by the hole in the secondary mirror (SM). It propagates to the aspheric null-mirror, which is optimized to make all the reflected rays to be normal to the primary mirror (PM) upon reflection. PM retro-reflects the rays back through the system for wavefront analysis. The point source and the wavefront analysis subsystems are all located behind the PM. The PM phasing is absolute (white light) and does not involve the SM. A relatively small, aspheric null-mirror located near the PM center of curvature has been designed to deliver the high level of optical wavefront correction. The phasing of the segments is absolute due to the use of a broadband source. The segmented PM is optically aligned independently and separately from the SM alignment. The separation of the PM segments alignment from the PM to the SM, and other telescope optics alignments, may be a significant advantage, eliminating the errors coupling. The point source of this concept is fully cooperative, unlike a star or laser-generated guide-star, providing the necessary brightness for the optimal S/N ratio, the spectral content, and the stable on-axis position. This concept can be implemented in the lab for the PM initial alignment, or made to be a permanent feature of the space-based or groundbased telescope.
Discriminative Shape Alignment
Loog, M.; de Bruijne, M.
taking into account that eventually the shapes are to be assigned to two or more different classes. This work introduces a discriminative variation to well-known Procrustes alignment and demonstrates its benefit over this classical method in shape classification tasks. The focus is on two...
G. Gomez and Y. Pakhotin
2012-01-01
A new track-based alignment for the DT chambers is ready for deployment: an offline tag has already been produced which will become part of the 52X Global Tag. This alignment was validated within the muon alignment group both at low and high momentum using a W/Z skim sample. It shows an improved mass resolution for pairs of stand-alone muons, improved curvature resolution at high momentum, and improved DT segment extrapolation residuals. The validation workflow for high-momentum muons used to depend solely on the “split cosmics” method, looking at the curvature difference between muon tracks reconstructed in the upper or lower half of CMS. The validation has now been extended to include energetic muons decaying from heavily boosted Zs: the di-muon invariant mass for global and stand-alone muons is reconstructed, and the invariant mass resolution is compared for different alignments. The main areas of development over the next few months will be preparing a new track-based C...
Aligning Mental Representations
Kano Glückstad, Fumiko
2013-01-01
This work introduces a framework that implements asymmetric communication theory proposed by Sperber and Wilson [1]. The framework applies a generalization model known as the Bayesian model of generalization (BMG) [2] for aligning knowledge possessed by two communicating parties. The work focuses...
Plasmonic Properties of Vertically Aligned Nanowire Arrays
Hua Qi; Glembocki, O. J.; Prokes, S. M.
2012-01-01
Nanowires (NWs)/Ag sheath composites were produced to investigate plasmonic coupling between vertically aligned NWs for surface-enhanced Raman scattering (SERS) applications. In this investigation, two types of vertical NW arrays were studied; those of ZnO NWs grown on nanosphere lithography patterned sapphire substrate via vapor-liquid-solid (VLS) mechanism and Si NW arrays produced by wet chemical etching. Both types of vertical NW arrays were coated with a thin layer of silver by electrole...
On the Alignment of Shapes Represented by Fourier Descriptors
Sjöstrand, Karl; Ericsson, Anders; Larsen, Rasmus
2006-01-01
starting points, the alignment of one shape onto another consists of a single expression. If the starting points are arbitrary, we present a simple iterative scheme to bring a set of shapes into correspondence. Results are given for three different data sets; 62 outlines of the corpus callosum brain...
Fast global sequence alignment technique
Bonny, Mohamed Talal
2011-11-01
Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.
ABS: Sequence alignment by scanning
Bonny, Mohamed Talal
2011-08-01
Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.
MaxAlign: maximizing usable data in an alignment
Pedersen Anders G
2007-08-01
Full Text Available Abstract Background The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for instance, gapped columns are often discarded entirely from the alignment. Results MaxAlign is a program that optimizes the alignment prior to such analyses. Specifically, it maximizes the number of nucleotide (or amino acid symbols that are present in gap-free columns – the alignment area – by selecting the optimal subset of sequences to exclude from the alignment. MaxAlign can be used prior to phylogenetic and bioinformatical analyses as well as in other situations where this form of alignment improvement is useful. In this work we test MaxAlign's performance in these tasks and compare the accuracy of phylogenetic estimates including and excluding gapped columns from the analysis, with and without processing with MaxAlign. In this paper we also introduce a new simple measure of tree similarity, Normalized Symmetric Similarity (NSS that we consider useful for comparing tree topologies. Conclusion We demonstrate how MaxAlign is helpful in detecting misaligned or defective sequences without requiring manual inspection. We also show that it is not advisable to exclude gapped columns from phylogenetic analyses unless MaxAlign is used first. Finally, we find that the sequences removed by MaxAlign from an alignment tend to be those that would otherwise be associated with low phylogenetic accuracy, and that the presence of gaps in any given sequence does not seem to disturb the phylogenetic estimates of other sequences. The MaxAlign web-server is freely available online at http://www.cbs.dtu.dk/services/MaxAlign where supplementary information can also be found. The program is also freely available as a Perl stand-alone package.
Synchronization of general complex networks via adaptive control schemes
Ping He; Chun-Guo Jing; Chang-Zhong Chen; Tao Fan; Hassan Saberi Nik
2014-03-01
In this paper, the synchronization problem of general complex networks is investigated by using adaptive control schemes. Time-delay coupling, derivative coupling, nonlinear coupling etc. exist universally in real-world complex networks. The adaptive synchronization scheme is designed for the complex network with multiple class of coupling terms. A criterion guaranteeing synchronization of such complex networks is established by employing the Lyapunov stability theorem and adaptive control schemes. Finally, an illustrative example with numerical simulation is given to show the feasibility and efficiency of theoretical results.
Lokhtin, I P; Sarycheva, L I; Snigirev, A M
2005-01-01
The hypothesis about the relation between the observed alignment of spots in the x-ray film in cosmic ray emulsion experiments and the features of events in which jets prevail at super high energies is tested. Due to strong correlation between jet axis directions and that between momenta (almost collinearity) of jet particles, the evaluated degree of alignment is considerably larger than that at randomly selected chaoticly located spots in the x-ray film. It appears comparable with experimental data provided that the height of primary interaction, the collision energy and the total energy of selected clusters meet certain conditions. The Monte Carlo generator PYTHIA, which basically well describes jet events in hadron-hadron interactions, was used for the analysis.
Burgess, C.P. [PH -TH Division, CERN,CH-1211, Genève 23 (Switzerland); Department of Physics & Astronomy, McMaster University,1280 Main Street West, Hamilton ON (Canada); Perimeter Institute for Theoretical Physics,31 Caroline Street North, Waterloo ON (Canada); Roest, Diederik [Van Swinderen Institute for Particle Physics and Gravity, University of Groningen,Nijenborgh 4, 9747 AG Groningen (Netherlands)
2015-06-08
Pseudo-Goldstone bosons (pGBs) can provide technically natural inflatons, as has been comparatively well-explored in the simplest axion examples. Although inflationary success requires trans-Planckian decay constants, f≳M{sub p}, several mechanisms have been proposed to obtain this, relying on (mis-)alignments between potential and kinetic energies in multiple-field models. We extend these mechanisms to a broader class of inflationary models, including in particular the exponential potentials that arise for pGB potentials based on noncompact groups (and so which might apply to moduli in an extra-dimensional setting). The resulting potentials provide natural large-field inflationary models and can predict a larger primordial tensor signal than is true for simpler single-field versions of these models. In so doing we provide a unified treatment of several alignment mechanisms, showing how each emerges as a limit of the more general setup.
Blin, Guillaume; Denise, Alain; Dulucq, Serge; Herrbach, Claire; Touzet, Hélène
2010-01-01
We describe a theoretical unifying framework to express the comparison of RNA structures, which we call alignment hierarchy. This framework relies on the definition of common supersequences for arc-annotated sequences and encompasses the main existing models for RNA structure comparison based on trees and arc-annotated sequences with a variety of edit operations. It also gives rise to edit models that have not been studied yet. We provide a thorough analysis of the alignment hierarchy, including a new polynomial-time algorithm and an NP-completeness proof. The polynomial-time algorithm involves biologically relevant edit operations such as pairing or unpairing nucleotides. It has been implemented in a software, called gardenia, which is available at the Web server http://bioinfo.lifl.fr/RNA/gardenia. PMID:20431150
Splitting scheme for poroelasticity and thermoelasticity problems
Vabishchevich, P. N.; Vasil'eva, M. V.; Kolesov, A. E.
2014-08-01
Boundary value problems in thermoelasticity and poroelasticity (filtration consolidation) are solved numerically. The underlying system of equations consists of the Lamé stationary equations for displacements and nonstationary equations for temperature or pressure in the porous medium. The numerical algorithm is based on a finite-element approximation in space. Standard stability conditions are formulated for two-level schemes with weights. Such schemes are numerically implemented by solving a system of coupled equations for displacements and temperature (pressure). Splitting schemes with respect to physical processes are constructed, in which the transition to a new time level is associated with solving separate elliptic problems for the desired displacements and temperature (pressure). Unconditionally stable additive schemes are constructed by choosing a weight of a three-level scheme.
Andersen, Tariq Osman; Bansler, Jørgen P.; Kensing, Finn; Moll, Jonas; Nielsen, Karen Dam
E-health promises to enable and support active patient participation in chronic care. However, these fairly recent innovations are complicated matters and emphasize significant challenges, such as patients’ and clinicians’ different ways of conceptualizing disease and illness. Informed by insights...... from medical phenomenology and our own empirical work in telemonitoring and medical care of heart patients, we propose a design rationale for e-health systems conceptualized as the ‘alignment of concerns’....
Nuclear reactor alignment plate configuration
Altman, David A; Forsyth, David R; Smith, Richard E; Singleton, Norman R
2014-01-28
An alignment plate that is attached to a core barrel of a pressurized water reactor and fits within slots within a top plate of a lower core shroud and upper core plate to maintain lateral alignment of the reactor internals. The alignment plate is connected to the core barrel through two vertically-spaced dowel pins that extend from the outside surface of the core barrel through a reinforcement pad and into corresponding holes in the alignment plate. Additionally, threaded fasteners are inserted around the perimeter of the reinforcement pad and into the alignment plate to further secure the alignment plate to the core barrel. A fillet weld also is deposited around the perimeter of the reinforcement pad. To accomodate thermal growth between the alignment plate and the core barrel, a gap is left above, below and at both sides of one of the dowel pins in the alignment plate holes through with the dowel pins pass.
2002-01-01
The first full-scale tests of the ATLAS Muon Spectrometer are about to begin in Prévessin. The set-up includes several layers of Monitored Drift Tubes Chambers (MDTs) and will allow tests of the performance of the detectors and of their highly accurate alignment system. Monitored Drift Chambers in Building 887 in Prévessin, where they are just about to be tested. Muon chambers are keeping the ATLAS Muon Spectrometer team quite busy this summer. Now that most people go on holiday, the beam and alignment tests for these chambers are just starting. These chambers will measure with high accuracy the momentum of high-energy muons, and this implies very demanding requirements for their alignment. The MDT chambers consist of drift tubes, which are gas-filled metal tubes, 3 cm in diameter, with wires running down their axes. With high voltage between the wire and the tube wall, the ionisation due to traversing muons is detected as electrical pulses. With careful timing of the pulses, the position of the muon t...
The ESRF Survey and Alignment group is responsible for the installation, control and periodic realignment of the accelerators and experiments which produce high quality x-rays used by scientists from Europe and around the world. Alignment tolerances are typically less than one millimetre and often in the order of several micrometers. The group is composed of one engineer, five highly trained survey technicians, one electronic and one computer technician. This team is fortified during peak periods by technicians from an external survey company. First an overview and comparative study of the main large-scale survey instrumentation and methods used by the group is made. Secondly a discussion of long term deformation on the ESRF site is presented. This is followed by presentation of the methods used in the realignment of the various machines. Two important aspects of our work, beamline and front-end alignment, and the so-called machine exotic devices are briefly discussed. Finally, the ESRF calibration bench is presented. (authors)
Consistency of non-minimal renormalisation schemes
Jack, I
2016-01-01
Non-minimal renormalisation schemes such as the momentum subtraction scheme (MOM) have frequently been used for physical computations. The consistency of such a scheme relies on the existence of a coupling redefinition linking it to MSbar. We discuss the implementation of this procedure in detail for a general theory and show how to construct the relevant redefinition up to three-loop order, for the case of a general theory of fermions and scalars in four dimensions and a general scalar theory in six dimensions.
Semiautomated improvement of RNA alignments
Andersen, Ebbe Sloth; Lind-Thomsen, Allan; Knudsen, Bjarne;
2007-01-01
We have developed a semiautomated RNA sequence editor (SARSE) that integrates tools for analyzing RNA alignments. The editor highlights different properties of the alignment by color, and its integrated analysis tools prevent the introduction of errors when doing alignment editing. SARSE readily...... the SARSE editor makes it a flexible tool to improve all RNA alignments with relatively little human intervention. Online documentation and software are available at (http://sarse.ku.dk)....
Alignment as a Teacher Variable
Porter, Andrew C.; Smithson, John; Blank, Rolf; Zeidner, Timothy
2007-01-01
With the exception of the procedures developed by Porter and colleagues (Porter, 2002), other methods of defining and measuring alignment are essentially limited to alignment between tests and standards. Porter's procedures have been generalized to investigating the alignment between content standards, tests, textbooks, and even classroom…
GPCODON ALIGNMENT: A GLOBAL PAIRWISE CODON BASED SEQUENCE ALIGNMENT APPROACH
Zeinab A. Fareed
2016-02-01
Full Text Available The alignment of two DNA sequences is a basic step in the analysis of biological data. Sequencing a long DNA sequence is one of the most interesting problems in bioinformatics. Several techniques have been developed to solve this sequence alignment problem like dynamic programming and heuristic algorithms. In this paper, we introduce (GPCodon alignment a pairwise DNA-DNA method for global sequence alignment that improves the accuracy of pairwise sequence alignment. We use a new scoring matrix to produce the final alignment called the empirical codon substitution matrix. Using this matrix in our technique enabled the discovery of new relationships between sequences that could not be discovered using traditional matrices. In addition, we present experimental results that show the performance of the proposed technique over eleven datasets of average length of 2967 bps. We compared the efficiency and accuracy of our techniques against a comparable tool called “Pairwise Align Codons” [1].
Alignment and operability analysis of a vertical sodium pump
With the objective of identifying important alignment features of pumps such as FFTF, HALLAM, EBR II, PNC, PHENIX, and CRBR, alignment of the vertical sodium pump for the Clinch River Breeder Reactor Plant (CRBRP) is investigated. The CRBRP pump includes a flexibly coupled pump shaft and motor shaft, two oil-film tilting-pad hydrodynamic radial bearings in the motor plus a vertical thrust bearing, and two sodium hydrostatic bearings straddling the double-suction centrifugal impeller in the pump
Alignment and operability analysis of a vertical sodium pump
Gupta, V.K.; Fair, C.E.
1981-01-01
With the objective of identifying important alignment features of pumps such as FFTF, HALLAM, EBR II, PNC, PHENIX, and CRBR, alignment of the vertical sodium pump for the Clinch River Breeder Reactor Plant (CRBRP) is investigated. The CRBRP pump includes a flexibly coupled pump shaft and motor shaft, two oil-film tilting-pad hydrodynamic radial bearings in the motor plus a vertical thrust bearing, and two sodium hydrostatic bearings straddling the double-suction centrifugal impeller in the pump.
Fault-Tolerant Visual Secret Sharing Schemes without Pixel Expansion
Justie Su-Tzu Juan; Yung-Chang Chen; Song Guo
2016-01-01
Visual cryptography encrypts a secret image into two meaningless random images, called shares, such that it can be decrypted by human vision without any calculations. However, there would be problems in alignment when these two shares are staked by hand in practice. Therefore, this paper presents the fault-tolerant schemes of stacking two shares that are acquired from secret image encryption without pixel expansion. The main idea of these schemes is to combine several pixels as a unit and the...
An asymptotic preserving scheme for strongly anisotropic elliptic problems
Degond, Pierre; Deluzet, Fabrice; Negulescu, Claudia
2009-01-01
21 pages In this article we introduce an asymptotic preserving scheme designed to compute the solution of a two dimensional elliptic equation presenting large anisotropies. We focus on an anisotropy aligned with one direction, the dominant part of the elliptic operator being supplemented with Neumann boundary conditions. A new scheme is introduced which allows an accurate resolution of this elliptic equation for an arbitrary anisotropy ratio.
Convertible Proxy Signcryption Scheme
李继国; 李建中; 曹珍富; 张亦辰
2004-01-01
In 1996, Mambo et al introduced the concept of proxy signature. However, proxy signature can only provide the delegated authenticity and cannot provide confidentiality. Recently, Gamage et al and Chan and Wei proposed different proxy signcryption schemes respectively, which extended the concept of proxy signature.However, only the specified receiver can decrypt and verify the validity of proxy signcryption in their schemes.To protect the receiver' s benefit in case of a later dispute, Wu and Hsu proposed a convertible authenticated encryption scheme, which carn enable the receiver to convert signature into an ordinary one that can be verified by anyone. Based on Wu and Hsu' s scheme and improved Kim' s scheme, we propose a convertible proxy signcryption scheme. The security of the proposed scheme is based on the intractability of reversing the one-way hash function and solving the discrete logarithm problem. The proposed scheme can satisfy all properties of strong proxy signature and withstand the public key substitution attack and does not use secure channel. In addition, the proposed scheme can be extended to convertible threshold proxy signcryption scheme.
Banks, Tom
2012-01-01
We summarize recent work in which we attempt to make a consistent model of LHC physics, from the Pyramid Scheme. The models share much with the NMSSM, in particular, enhanced tree level contributions to the Higgs mass and a preference for small tan {\\beta}. There are 3 different singlet fields, and a new strongly coupled gauge theory, so the constraints of perturbative unification are quite different. We outline our general approach to the model, which contains a Kahler potential for three of the low energy fields, which is hard to calculate. Detailed calculations, based on approximations to the Kahler potential, will be presented in a future publication.
Surface Dipole Control of Liquid Crystal Alignment.
Schwartz, Jeffrey J; Mendoza, Alexandra M; Wattanatorn, Natcha; Zhao, Yuxi; Nguyen, Vinh T; Spokoyny, Alexander M; Mirkin, Chad A; Baše, Tomáš; Weiss, Paul S
2016-05-11
Detailed understanding and control of the intermolecular forces that govern molecular assembly are necessary to engineer structure and function at the nanoscale. Liquid crystal (LC) assembly is exceptionally sensitive to surface properties, capable of transducing nanoscale intermolecular interactions into a macroscopic optical readout. Self-assembled monolayers (SAMs) modify surface interactions and are known to influence LC alignment. Here, we exploit the different dipole magnitudes and orientations of carboranethiol and -dithiol positional isomers to deconvolve the influence of SAM-LC dipolar coupling from variations in molecular geometry, tilt, and order. Director orientations and anchoring energies are measured for LC cells employing various carboranethiol and -dithiol isomer alignment layers. The normal component of the molecular dipole in the SAM, toward or away from the underlying substrate, was found to determine the in-plane LC director orientation relative to the anisotropy axis of the surface. By using LC alignment as a probe of interaction strength, we elucidate the role of dipolar coupling of molecular monolayers to their environment in determining molecular orientations. We apply this understanding to advance the engineering of molecular interactions at the nanoscale. PMID:27090503
Martinez Ruiz-Del-Arbol, P
2009-01-01
The alignment of the muon system of CMS is performed using different techniques: photogrammetry measurements, optical alignment and alignment with tracks. For track-based alignment, several methods are employed, ranging from a hit and impact point (HIP) algorithm and a procedure exploiting chamber overlaps to a global fit method based on the Millepede approach. For start-up alignment as long as available integrated luminosity is still significantly limiting the size of the muon sample from collisions, cosmic muon and beam halo signatures play a very strong role. During the last commissioning runs in 2008 the first aligned geometries have been produced and validated with data. The CMS offline computing infrastructure has been used in order to perform improved reconstructions. We present the computational aspects related to the calculation of alignment constants at the CERN Analysis Facility (CAF), the production and population of databases and the validation and performance in the official reconstruction. Also...
G. Katata
2014-06-01
Full Text Available Temporal variations in the amount of radionuclides released into the atmosphere during the Fukushima Dai-ichi Nuclear Power Station (FNPS1 accident and their atmospheric and marine dispersion are essential to evaluate the environmental impacts and resultant radiological doses to the public. In this paper, we estimate a detailed time trend of atmospheric releases during the accident by combining environmental monitoring data with atmospheric model simulations from WSPEEDI-II (Worldwide version of System for Prediction of Environmental Emergency Dose Information, and simulations from the oceanic dispersion model SEA-GEARN-FDM, both developed by the authors. A sophisticated deposition scheme, which deals with dry and fogwater depositions, cloud condensation nuclei (CCN activation and subsequent wet scavenging due to mixed-phase cloud microphysics (in-cloud scavenging for radioactive iodine gas (I2 and CH3I and other particles (CsI, Cs, and Te, was incorporated into WSPEEDI-II to improve the surface deposition calculations. The fallout to the ocean surface calculated by WSPEEDI-II was used as input data for the SEA-GEARN-FDM calculations. Reverse and inverse source-term estimation methods based on coupling the simulations from both models was adopted using air dose rates and concentrations, and sea surface concentrations. The results revealed that the major releases of radionuclides due to FNPS1 accident occurred in the following periods during March 2011: the afternoon of 12 March due to the wet venting and hydrogen explosion at Unit 1, the morning of 13 March after the venting event at Unit 3, midnight of 14 March when the SRV (Safely Relief Valve at Unit 2 was opened three times, the morning and night of 15 March, and the morning of 16 March. According to the simulation results, the highest radioactive contamination areas around FNPS1 were created from 15 to 16 March by complicated interactions among rainfall, plume movements, and the temporal
Katata, G.; Chino, M.; Kobayashi, T.; Terada, H.; Ota, M.; Nagai, H.; Kajino, M.; Draxler, R.; Hort, M. C.; Malo, A.; Torii, T.; Sanada, Y.
2014-06-01
Temporal variations in the amount of radionuclides released into the atmosphere during the Fukushima Dai-ichi Nuclear Power Station (FNPS1) accident and their atmospheric and marine dispersion are essential to evaluate the environmental impacts and resultant radiological doses to the public. In this paper, we estimate a detailed time trend of atmospheric releases during the accident by combining environmental monitoring data with atmospheric model simulations from WSPEEDI-II (Worldwide version of System for Prediction of Environmental Emergency Dose Information), and simulations from the oceanic dispersion model SEA-GEARN-FDM, both developed by the authors. A sophisticated deposition scheme, which deals with dry and fogwater depositions, cloud condensation nuclei (CCN) activation and subsequent wet scavenging due to mixed-phase cloud microphysics (in-cloud scavenging) for radioactive iodine gas (I2 and CH3I) and other particles (CsI, Cs, and Te), was incorporated into WSPEEDI-II to improve the surface deposition calculations. The fallout to the ocean surface calculated by WSPEEDI-II was used as input data for the SEA-GEARN-FDM calculations. Reverse and inverse source-term estimation methods based on coupling the simulations from both models was adopted using air dose rates and concentrations, and sea surface concentrations. The results revealed that the major releases of radionuclides due to FNPS1 accident occurred in the following periods during March 2011: the afternoon of 12 March due to the wet venting and hydrogen explosion at Unit 1, the morning of 13 March after the venting event at Unit 3, midnight of 14 March when the SRV (Safely Relief Valve) at Unit 2 was opened three times, the morning and night of 15 March, and the morning of 16 March. According to the simulation results, the highest radioactive contamination areas around FNPS1 were created from 15 to 16 March by complicated interactions among rainfall, plume movements, and the temporal variation of
A patent is claimed for the invention of a beam alignment system. The aim of the invention is the obtention of an accurate monitoring of the beam position and direction. It is of great interest in the nuclear industry. The invention can be applied in an infrared laser beam for welding operations. An auxiliar radiation source is incorporated to the device. The system's configuration allows a simultaneous and separated utilisation of two beams. The description and the design of the proposed system are provided
Alignment in hadronic interactions
Wibig, T
2000-01-01
The alignment of the products of very high energy interactions seen in mountain altitude experiments is one of the most puzzling phenomena in cosmic ray physics for quite a long time. The observations of the Pamir and Chacaltaya emulsion chamber groups and by the Tien-Shan extensive air shower experiment, together with a very clear event seen in the Concorde French-Japanese experiment in the stratosphere, makes the experimental basis very substantial. In the present paper a novel possible explanation is put forward.
Flavour constraints on multi-Higgs-doublet models: Yukawa alignment
Pich, Antonio
2010-01-01
In multi-Higgs-doublet models, the alignment in flavour space of all Yukawa matrices coupling to a given right-handed fermion guarantees the absence of tree-level flavour-changing neutral couplings, while introducing new sources of CP violation. With N Higgs doublets (and no right-handed neutrinos) the Yukawa Lagrangian is characterized by the fermion masses, the CKM quark mixing matrix and 3(N-1) complex couplings. Quantum corrections break the alignment, generating a minimal-flavour-violation structure with flavour-blind phases. The aligned multi-Higgs-doublet models lead to a rich and viable phenomenology with an interesting hierarchy of flavour-changing neutral current effects, suppressing them in light-quark systems while allowing potentially relevant signals in heavy-quark transitions.
Stateless Transitive Signature Schemes
MA Chun-guang; CAI Man-chun; YANG Yi-xian
2004-01-01
A new practical method is introduced to transform the stateful transitive signature scheme to stateless one without the loss of security. According to the approach, two concrete stateless transitive signature schemes based on Factoring and RSA are presented respectively. Under the assumption of the hardness of factoring and one-more- RSA-inversion problem, both two schemes are secure under the adaptive chosen-message attacks in random oracle model.
Efficient Threshold Signature Scheme
Sattar J Aboud
2012-01-01
Full Text Available In this paper, we introduce a new threshold signature RSA-typed scheme. The proposed scheme has the characteristics of un-forgeable and robustness in random oracle model. Also, signature generation and verification is entirely non-interactive. In addition, the length of the entity signature participate is restricted by a steady times of the length of the RSA signature modulus. Also, the signing process of the proposed scheme is more efficient in terms of time complexity and interaction.
Automatic alignment of double optical paths in excimer laser amplifier
Wang, Dahui; Zhao, Xueqing; Hua, Hengqi; Zhang, Yongsheng; Hu, Yun; Yi, Aiping; Zhao, Jun
2013-05-01
A kind of beam automatic alignment method used for double paths amplification in the electron pumped excimer laser system is demonstrated. In this way, the beams from the amplifiers can be transferred along the designated direction and accordingly irradiate on the target with high stabilization and accuracy. However, owing to nonexistence of natural alignment references in excimer laser amplifiers, two cross-hairs structure is used to align the beams. Here, one crosshair put into the input beam is regarded as the near-field reference while the other put into output beam is regarded as the far-field reference. The two cross-hairs are transmitted onto Charge Coupled Devices (CCD) by image-relaying structures separately. The errors between intersection points of two cross-talk images and centroid coordinates of actual beam are recorded automatically and sent to closed loop feedback control mechanism. Negative feedback keeps running until preset accuracy is reached. On the basis of above-mentioned design, the alignment optical path is built and the software is compiled, whereafter the experiment of double paths automatic alignment in electron pumped excimer laser amplifier is carried through. Meanwhile, the related influencing factors and the alignment precision are analyzed. Experimental results indicate that the alignment system can achieve the aiming direction of automatic aligning beams in short time. The analysis shows that the accuracy of alignment system is 0.63μrad and the beam maximum restoration error is 13.75μm. Furthermore, the bigger distance between the two cross-hairs, the higher precision of the system is. Therefore, the automatic alignment system has been used in angular multiplexing excimer Main Oscillation Power Amplification (MOPA) system and can satisfy the requirement of beam alignment precision on the whole.
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).
Martin, Andrew C R
2014-01-01
The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and 'dotifying' repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/. PMID:25653836
A generalized scheme for designing multistable continuous dynamical systems
PAL SANTINATH; SAHOO BANSHIDHAR; PORIA SWARUP
2016-06-01
In this paper, a generalized scheme is proposed for designing multistable continuous dynamical systems. The scheme is based on the concept of partial synchronization of states and the concept of constants of motion. The most important observation is that by coupling two mdimensional dynamical systems, multistable nature can be obtained if i number of variables of the two systems are completely synchronized and j number of variables keep a constant difference between them i.e., their differences are constants of motion, where $i+j = m$ and $1 \\le i, j \\le m−1$. The proposed scheme is illustrated by taking coupled Lorenz systems and coupled chaotic Lorenzlike systems. According to the scheme, two coupled systems reduce to single modified system withsome initial condition-dependent parameters. Time evolution plots, phase diagrams, variation of maximum Lyapunov exponent and bifurcation diagrams of the systems are presented to show the multistable nature of the coupled systems.
2006-01-01
The ALICE absorbers, iron wall and superstructure have been installed with great precision. The ALICE front absorber, positioned in the centre of the detector, has been installed and aligned. Weighing more than 400 tonnes, the ALICE absorbers and the surrounding support structures have been installed and aligned with a precision of 1-2 mm, hardly an easy task but a very important one. The ALICE absorbers are made of three parts: the front absorber, a 35-tonne cone-shaped structure, and two small-angle absorbers, long straight cylinder sections weighing 18 and 40 tonnes. The three pieces lined up have a total length of about 17 m. In addition to these, ALICE technicians have installed a 300-tonne iron filter wall made of blocks that fit together like large Lego pieces and a surrounding metal support structure to hold the tracking and trigger chambers. The absorbers house the vacuum chamber and are also the reference surface for the positioning of the tracking and trigger chambers. For this reason, the ab...
Computing alignment plots efficiently
Krusche, Peter
2009-01-01
Dot plots are a standard method for local comparison of biological sequences. In a dot plot, a substring to substring distance is computed for all pairs of fixed-size windows in the input strings. Commonly, the Hamming distance is used since it can be computed in linear time. However, the Hamming distance is a rather crude measure of string similarity, and using an alignment-based edit distance can greatly improve the sensitivity of the dot plot method. In this paper, we show how to compute alignment plots of the latter type efficiently. Given two strings of length m and n and a window size w, this problem consists in computing the edit distance between all pairs of substrings of length w, one from each input string. The problem can be solved by repeated application of the standard dynamic programming algorithm in time O(mnw^2). This paper gives an improved data-parallel algorithm, running in time $O(mnw/\\gamma/p)$ using vector operations that work on $\\gamma$ values in parallel and $p$ processors. We show ex...
Robust Scheme for Long-Distance Teleportation of an Unknown Atomic State
无
2006-01-01
A scheme is presented for the long-distance teleportation of an unknown atomic state between two separated cavities. The scheme is based on the Raman coupling and cavity decay. In the scheme, the effective atom-cavity coupling strength is much smaller than the cavity decay rate and thus cavities of high quality factor are unnecesssary.
Conditional alignment random fields for multiple motion sequence alignment.
Kim, Minyoung
2013-11-01
We consider the multiple time-series alignment problem, typically focusing on the task of synchronizing multiple motion videos of the same kind of human activity. Finding an optimal global alignment of multiple sequences is infeasible, while there have been several approximate solutions, including iterative pairwise warping algorithms and variants of hidden Markov models. In this paper, we propose a novel probabilistic model that represents the conditional densities of the latent target sequences which are aligned with the given observed sequences through the hidden alignment variables. By imposing certain constraints on the target sequences at the learning stage, we have a sensible model for multiple alignments that can be learned very efficiently by the EM algorithm. Compared to existing methods, our approach yields more accurate alignment while being more robust to local optima and initial configurations. We demonstrate its efficacy on both synthetic and real-world motion videos including facial emotions and human activities. PMID:24051737
Open Microwave Cavity for use in a Purcell Enhancement Cooling Scheme
Evetts, N; Bizzotto, D; Longuevergne, D; Hardy, W N
2016-01-01
A microwave cavity is described which can be used to cool lepton plasmas for potential use in synthesis of antihydrogen. The cooling scheme is an incarnation of the Purcell Effect: when plasmas are coupled to a microwave cavity, the plasma cooling rate is resonantly enhanced through increased spontaneous emission of cyclotron radiation. The cavity forms a three electrode section of a Penning-Malmberg trap and has a bulged cylindrical geometry with open ends aligned with the magnetic trapping axis. This allows plasmas to be injected and removed from the cavity without the need for moving parts while maintaining high quality factors for resonant modes. The cavity includes unique surface preparations for adjusting the cavity quality factor and achieving anti-static shielding using thin layers of nichrome and colloidal graphite respectively. Geometric design considerations for a cavity with strong cooling power and low equilibrium plasma temperatures are discussed. Cavities of this weak-bulge design will be appli...
Li, Jing; Song, Ningfang; Yang, Gongliu; Jiang, Rui
2016-07-01
In the initial alignment process of strapdown inertial navigation system (SINS), large misalignment angles always bring nonlinear problem, which can usually be processed using the scaled unscented Kalman filter (SUKF). In this paper, the problem of large misalignment angles in SINS alignment is further investigated, and the strong tracking scaled unscented Kalman filter (STSUKF) is proposed with fixed parameters to improve convergence speed, while these parameters are artificially constructed and uncertain in real application. To further improve the alignment stability and reduce the parameters selection, this paper proposes a fuzzy adaptive strategy combined with STSUKF (FUZZY-STSUKF). As a result, initial alignment scheme of large misalignment angles based on FUZZY-STSUKF is designed and verified by simulations and turntable experiment. The results show that the scheme improves the accuracy and convergence speed of SINS initial alignment compared with those based on SUKF and STSUKF.
Li, Jing; Song, Ningfang; Yang, Gongliu; Jiang, Rui
2016-07-01
In the initial alignment process of strapdown inertial navigation system (SINS), large misalignment angles always bring nonlinear problem, which can usually be processed using the scaled unscented Kalman filter (SUKF). In this paper, the problem of large misalignment angles in SINS alignment is further investigated, and the strong tracking scaled unscented Kalman filter (STSUKF) is proposed with fixed parameters to improve convergence speed, while these parameters are artificially constructed and uncertain in real application. To further improve the alignment stability and reduce the parameters selection, this paper proposes a fuzzy adaptive strategy combined with STSUKF (FUZZY-STSUKF). As a result, initial alignment scheme of large misalignment angles based on FUZZY-STSUKF is designed and verified by simulations and turntable experiment. The results show that the scheme improves the accuracy and convergence speed of SINS initial alignment compared with those based on SUKF and STSUKF. PMID:27475606
Spontaneous CP violation in the 2HDM: physical conditions and the alignment limit
Grzadkowski, B; Osland, P
2016-01-01
For the general Two-Higgs-Doublet model, we present conditions for having spontaneous CP violation, in terms of physical masses and couplings. These relations involve the charged-Higgs mass, its cubic couplings with neutral scalars and quartic coupling, and become particularly simple in the alignment limit. In the simplified model with softly broken $Z_2$ symmetry, some deviation from alignment is required for spontaneous CP violation to be present.
Fault-Tolerant Visual Secret Sharing Schemes without Pixel Expansion
Justie Su-Tzu Juan
2016-01-01
Full Text Available Visual cryptography encrypts a secret image into two meaningless random images, called shares, such that it can be decrypted by human vision without any calculations. However, there would be problems in alignment when these two shares are staked by hand in practice. Therefore, this paper presents the fault-tolerant schemes of stacking two shares that are acquired from secret image encryption without pixel expansion. The main idea of these schemes is to combine several pixels as a unit and then to encrypt each unit into a specific combination of pixels. Both theoretical analysis and simulation results demonstrate the effectiveness and practicality of the proposed schemes.
Dust alignment in astrophysical environments
Lazarian, Alex; Thiem Hoang, Chi
Dust is known to be aligned in interstellar medium and the arising polarization is extensively used to trace magnetic fields. What process aligns dust grains was one of the most long-standing problems of astrophysics in spite of the persistent efforts to solve it. For years the Davis-Greenstein paramagnetic alignment was the primary candidate for explaining grain alignment. However, the situation is different now and the most promising mechanism is associated with radiative torques (RATs) acting on irregular grains. I shall present the analytical theory of RAT alignment, discuss the observational tests that support this theory. I shall also discuss in what situations we expect to see the dominance of paramagnetic alignment.
Nova laser alignment control system
Alignment of the Nova laser requires control of hundreds of optical components in the ten beam paths. Extensive application of computer technology makes daily alignment practical. The control system is designed in a manner which provides both centralized and local manual operator controls integrated with automatic closed loop alignment. Menudriven operator consoles using high resolution color graphics displays overlaid with transport touch panels allow laser personnel to interact efficiently with the computer system. Automatic alignment is accomplished by using image analysis techniques to determine beam references points from video images acquired along the laser chain. A major goal of the design is to contribute substantially to rapid experimental turnaround and consistent alignment results. This paper describes the computer-based control structure and the software methods developed for aligning this large laser system
Nuclear reactor internals alignment configuration
Gilmore, Charles B.; Singleton, Norman R.
2009-11-10
An alignment system that employs jacking block assemblies and alignment posts around the periphery of the top plate of a nuclear reactor lower internals core shroud to align an upper core plate with the lower internals and the core shroud with the core barrel. The distal ends of the alignment posts are chamfered and are closely received within notches machined in the upper core plate at spaced locations around the outer circumference of the upper core plate. The jacking block assemblies are used to center the core shroud in the core barrel and the alignment posts assure the proper orientation of the upper core plate. The alignment posts may alternately be formed in the upper core plate and the notches may be formed in top plate.
Catalyzing alignment processes
Lauridsen, Erik Hagelskjær; Jørgensen, Ulrik
2004-01-01
time and in combination with other social processes establish more aligned and standardized environmental performance between countries. However, examples of the introduction of environmental management suggests that EMS’ only plays a minor role in developing the actual environmental objectives......This paper describes how environmental management systems (EMS) spur the circulation of processes that support the constitution of environmental issues as specific environ¬mental objects and objectives. EMS catalyzes alignmentprocesses that produce coherence among the different elements involved...... they are implemented in and how the changing context is reflected in the environmental objectives that are established and prioritised. Our argument is, that the ability of the standard to achieve an impact is dependant on the constitution of ’coherent’ environmental issues in the context, where the management system...
GraphAlignment: Bayesian pairwise alignment of biological networks
Kolář Michal
2012-11-01
Full Text Available Abstract Background With increased experimental availability and accuracy of bio-molecular networks, tools for their comparative and evolutionary analysis are needed. A key component for such studies is the alignment of networks. Results We introduce the Bioconductor package GraphAlignment for pairwise alignment of bio-molecular networks. The alignment incorporates information both from network vertices and network edges and is based on an explicit evolutionary model, allowing inference of all scoring parameters directly from empirical data. We compare the performance of our algorithm to an alternative algorithm, Græmlin 2.0. On simulated data, GraphAlignment outperforms Græmlin 2.0 in several benchmarks except for computational complexity. When there is little or no noise in the data, GraphAlignment is slower than Græmlin 2.0. It is faster than Græmlin 2.0 when processing noisy data containing spurious vertex associations. Its typical case complexity grows approximately as O(N2.6. On empirical bacterial protein-protein interaction networks (PIN and gene co-expression networks, GraphAlignment outperforms Græmlin 2.0 with respect to coverage and specificity, albeit by a small margin. On large eukaryotic PIN, Græmlin 2.0 outperforms GraphAlignment. Conclusions The GraphAlignment algorithm is robust to spurious vertex associations, correctly resolves paralogs, and shows very good performance in identification of homologous vertices defined by high vertex and/or interaction similarity. The simplicity and generality of GraphAlignment edge scoring makes the algorithm an appropriate choice for global alignment of networks.
MaxAlign: maximizing usable data in an alignment
Oliveira, Rodrigo Gouveia; Sackett, Peter Wad; Pedersen, Anders Gorm
2007-01-01
of gaps in any given sequence does not seem to disturb the phylogenetic estimates of other sequences. The MaxAlign web-server is freely available online at http://www.cbs.dtu.dk/services/MaxAlign where supplementary information can also be found. The program is also freely available as a Perl stand...
Pyro-Align: Sample-Align based Multiple Alignment system for Pyrosequencing Reads of Large Number
Saeed, Fahad
2009-01-01
Pyro-Align is a multiple alignment program specifically designed for pyrosequencing reads of huge number. Multiple sequence alignment is shown to be NP-hard and heuristics are designed for approximate solutions. Multiple sequence alignment of pyrosequenceing reads is complex mainly because of 2 factors. One being the huge number of reads, making the use of traditional heuristics,that scale very poorly for large number, unsuitable. The second reason is that the alignment cannot be performed arbitrarily, because the position of the reads with respect to the original genome is important and has to be taken into account.In this report we present a short description of the multiple alignment system for pyrosequencing reads.
Constrained-DFT method for accurate energy-level alignment of metal/molecule interfaces
Souza, A. M.
2013-10-07
We present a computational scheme for extracting the energy-level alignment of a metal/molecule interface, based on constrained density functional theory and local exchange and correlation functionals. The method, applied here to benzene on Li(100), allows us to evaluate charge-transfer energies, as well as the spatial distribution of the image charge induced on the metal surface. We systematically study the energies for charge transfer from the molecule to the substrate as function of the molecule-substrate distance, and investigate the effects arising from image-charge confinement and local charge neutrality violation. For benzene on Li(100) we find that the image-charge plane is located at about 1.8 Å above the Li surface, and that our calculated charge-transfer energies compare perfectly with those obtained with a classical electrostatic model having the image plane located at the same position. The methodology outlined here can be applied to study any metal/organic interface in the weak coupling limit at the computational cost of a total energy calculation. Most importantly, as the scheme is based on total energies and not on correcting the Kohn-Sham quasiparticle spectrum, accurate results can be obtained with local/semilocal exchange and correlation functionals. This enables a systematic approach to convergence.
Nørmark, Kurt
2010-01-01
A Scheme representation of Standard MIDI Files is proposed. The Scheme expressions are defined and constrained by an XML-language, which in the starting point is inspired by a MIDI XML event language made by the MIDI Manufactures Association. The representation of Standard MIDI Files in Scheme...... makes it possible to carry out systematic modifications and transformations of MIDI contents with use of pure functional programming. Side by side with the XML-inspired MIDI language, the paper describes an Emacs-based, textual programming environment that supports the MIDI programming process...
Lexical alignment in triadic communication
Anouschka eFoltz
2015-02-01
Full Text Available Lexical alignment refers to the adoption of one’s interlocutor’s lexical items. Accounts of the mechanisms underlying such lexical alignment differ (among other aspects in the role assigned to addressee-centered behavior. In this study, we used a triadic communicative situation to test which factors may modulate the extent to which participants’ lexical alignment reflects addressee-centered behavior. Pairs of naïve participants played a picture matching game and received information about the order in which pictures were to be matched from a voice over headphones. On critical trials, participants did or did not hear a name for the picture to be matched next over headphones. Importantly, when the voice over headphones provided a name, it did not match the name that the interlocutor had previously used to describe the object. Participants overwhelmingly used the word that the voice over headphones provided. This result points to non-addressee-centered behavior and is discussed in terms of disrupting alignment with the interlocutor as well as in terms of establishing alignment with the voice over headphones. In addition, the type of picture (line drawing vs. tangram shape independently modulated lexical alignment, such that participants showed more lexical alignment to their interlocutor for (more ambiguous tangram shapes compared to line drawings. Overall, the results point to a rather large role for non-addressee-centered behavior during lexical alignment.