WorldWideScience

Sample records for accessing cereal genomics

  1. Next Generation Characterisation of Cereal Genomes for Marker Discovery

    Paul Visendi; Jacqueline Batley; David Edwards

    2013-01-01

    Cereal crops form the bulk of the world’s food sources, and thus their importance cannot be understated. Crop breeding programs increasingly rely on high-resolution molecular genetic markers to accelerate the breeding process. The development of these markers is hampered by the complexity of some of the major cereal crop genomes, as well as the time and cost required. In this review, we address current and future methods available for the characterisation of cereal genomes, with an emphasis o...

  2. Prospects for advancing defense to cereal rusts through genetical genomics.

    Ballini, Elsa; Lauter, Nick; Wise, Roger

    2013-01-01

    Rusts are one of the most severe threats to cereal crops because new pathogen races emerge regularly, resulting in infestations that lead to large yield losses. In 1999, a new race of stem rust, Puccinia graminis f. sp. tritici (Pgt TTKSK or Ug99), was discovered in Uganda. Most of the wheat and barley cultivars grown currently worldwide are susceptible to this new race. Pgt TTKSK has already spread northward into Iran and will likely spread eastward throughout the Indian subcontinent in the near future. This scenario is not unique to stem rust; new races of leaf rust (Puccinia triticina) and stripe rust (Puccinia striiformis) have also emerged recently. One strategy for countering the persistent adaptability of these pathogens is to stack complete- and partial-resistance genes, which requires significant breeding efforts in order to reduce deleterious effects of linkage drag. These varied resistance combinations are typically more difficult for the pathogen to defeat, since they would be predicted to apply lower selection pressure. Genetical genomics or expression Quantitative Trait Locus (eQTL) analysis enables the identification of regulatory loci that control the expression of many to hundreds of genes. Integrated deployment of these technologies coupled with efficient phenotyping offers significant potential to elucidate the regulatory nodes in genetic networks that orchestrate host defense responses. The focus of this review will be to present advances in genetical genomic experimental designs and analysis, particularly as they apply to the prospects for discovering partial disease resistance alleles in cereals. PMID:23641250

  3. Organellar genome analysis of rye (Secale cereale) representing diverse geographic regions

    Rye (Secale cereale) is an important diploid (2n = 14, RR) crop species of the Tritceae and a better understanding of it organellar genome variation can aid in its improvement. Previous genetic analyses of rye focused on the nuclear genome. In the present study, the objective was to investigate the ...

  4. Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals.

    Shelden, Megan C; Roessner, Ute

    2013-01-01

    Abiotic stresses such as low water availability and high salinity are major causes of cereal crop yield losses and significantly impact on sustainability. Wheat and barley are two of the most important cereal crops (after maize and rice) and are grown in increasingly hostile environments with soil salinity and drought both expected to increase this century, reducing the availability of arable land. Barley and wheat are classified as glycophytes (salt-sensitive), yet they are more salt-tolerant than other cereal crops such as rice and so are good models for studying salt tolerance in cereals. The exploitation of genetic variation of phenotypic traits through plant breeding could significantly improve growth of cereals in salinity-affected regions, thus leading to improved crop yields. Genetic variation in phenotypic traits for abiotic stress tolerance have been identified in land races and wild germplasm but the molecular basis of these differences is often difficult to determine due to the complex genetic nature of these species. High-throughput functional genomics technologies, such as transcriptomics, metabolomics, proteomics, and ionomics are powerful tools for investigating the molecular responses of plants to abiotic stress. The advancement of these technologies has allowed for the identification and quantification of transcript/metabolites in specific cell types and/or tissues. Using these new technologies on plants will provide a powerful tool to uncovering genetic traits in more complex species such as wheat and barley and provide novel insights into the molecular mechanisms of salinity stress tolerance. PMID:23717314

  5. Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals

    Megan C Shelden

    2013-05-01

    Full Text Available Abiotic stresses such as low water availability and high salinity are major causes of cereal crop yield losses and significantly impact on sustainability. Wheat and barley are two of the most important cereal crops (after maize and rice and are grown in increasingly hostile environments with soil salinity and drought both expected to increase this century, reducing the availability of arable land. Barley and wheat are classified as glycophytes (salt-sensitive, yet they are more salt-tolerant than other cereal crops such as rice and so are good models for studying salt-tolerance in cereals. The exploitation of genetic variation of phenotypic traits through plant breeding could significantly improve growth of cereals in salinity-affected regions, thus leading to improved crop yields. Genetic variation in phenotypic traits for abiotic stress tolerance have been identified in land races and wild germplasm but the molecular basis of these differences is often difficult to determine due to the complex genetic nature of these species. High-throughput functional genomics technologies, such as transcriptomics, metabolomics, proteomics and ionomics are powerful tools for investigating the molecular responses of plants to abiotic stress. The advancement of these technologies has allowed for the identification and quantification of transcript /metabolites in specific cell types and/or tissues. Using these new technologies on plants will provide a powerful tool to uncovering genetic traits in more complex species such as wheat and barley and provide novel insights into the molecular mechanisms of salinity stress tolerance.

  6. Discrimination of Repetitive Sequences Polymorphism in Secale cereale by Genomic In Situ Hybridization-Banding

    Jian-Ping Zhou; Zu-Jun Yang; Guang-Rong Li; Cheng Liu; Zheng-Long Ren

    2008-01-01

    Genomic in situ hybridization banding (GISH-banding), a technique slightly modified from conventional GISH, was used to probe the Chinese native rye (Secale cereale L.) DNA, and enabled us to visualize the Individual rye chromosomes and create a universal reference karyotype of the S. cereale chromosome 1R to 7R. The GISH-banding approach used in the present study was able to discriminate S. cereale chromosomes or segments in the wheat (Triticum aeativum L.) background, including the Triticale, wheat-rye addition and translocation lines. Moreover, the GISH-banding pattern of S.cereale subsp. Afghanicum chromosomes was consistent with that of Chinese native rye cv. Jingzhou rye; whereas the GISH-banding pattem of Secale vavilovli was different from that of S. cereale, indicating that GISH-banding can be used to study evolutionary polymorphism in species or subspecies of Secale. In addition, the production and application of GISH-banding to the study of adenine-thymine-riched heterochromatin is discussed.

  7. Open Access Data Sharing in Genomic Research

    Stacey Pereira

    2014-08-01

    Full Text Available The current emphasis on broad sharing of human genomic data generated in research in order to maximize utility and public benefit is a significant legacy of the Human Genome Project. Concerns about privacy and discrimination have led to policy responses that restrict access to genomic data as the means for protecting research participants. Our research and experience show, however, that a considerable number of research participants agree to open access sharing of their genomic data when given the choice. General policies that limit access to all genomic data fail to respect the autonomy of these participants and, at the same time, unnecessarily limit the utility of the data. We advocate instead a more balanced approach that allows for individual choice and encourages informed decision making, while protecting against the misuse of genomic data through enhanced legislation.

  8. Accessing complexity from genome information

    Tenreiro Machado, J. A.

    2012-06-01

    This paper studies the information content of the chromosomes of 24 species. In a first phase, a scheme inspired in dynamical system state space representation is developed. For each chromosome the state space dynamical evolution is shed into a two dimensional chart. The plots are then analyzed and characterized in the perspective of fractal dimension. This information is integrated in two measures of the species' complexity addressing its average and variability. The results are in close accordance with phylogenetics pointing quantitative aspects of the species' genomic complexity.

  9. Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals

    Shelden, Megan C.; Roessner, Ute

    2013-01-01

    Abiotic stresses such as low water availability and high salinity are major causes of cereal crop yield losses and significantly impact on sustainability. Wheat and barley are two of the most important cereal crops (after maize and rice) and are grown in increasingly hostile environments with soil salinity and drought both expected to increase this century, reducing the availability of arable land. Barley and wheat are classified as glycophytes (salt-sensitive), yet they are more salt-toleran...

  10. Public Access for Teaching Genomics, Proteomics, and Bioinformatics

    Campbell, A. Malcolm

    2003-01-01

    When the human genome project was conceived, its leaders wanted all researchers to have equal access to the data and associated research tools. Their vision of equal access provides an unprecedented teaching opportunity. Teachers and students have free access to the same databases that researchers are using. Furthermore, the recent movement to deliver scientific publications freely has presented a second source of current information for teaching. I have developed a genomics course that incor...

  11. Public Access for Teaching Genomics, Proteomics, and Bioinformatics

    Campbell, A. Malcolm

    2003-01-01

    When the human genome project was conceived, its leaders wanted all researchers to have equal access to the data and associated research tools. Their vision of equal access provides an unprecedented teaching opportunity. Teachers and students have free access to the same databases that researchers are using. Furthermore, the recent movement to…

  12. Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution.

    Quraishi, Umar Masood; Abrouk, Michael; Murat, Florent; Pont, Caroline; Foucrier, Séverine; Desmaizieres, Gregory; Confolent, Carole; Rivière, Nathalie; Charmet, Gilles; Paux, Etienne; Murigneux, Alain; Guerreiro, Laurent; Lafarge, Stéphane; Le Gouis, Jacques; Feuillet, Catherine; Salse, Jerome

    2011-03-01

    Monitoring nitrogen use efficiency (NUE) in plants is becoming essential to maintain yield while reducing fertilizer usage. Optimized NUE application in major crops is essential for long-term sustainability of agriculture production. Here, we report the precise identification of 11 major chromosomal regions controlling NUE in wheat that co-localise with key developmental genes such as Ppd (photoperiod sensitivity), Vrn (vernalization requirement), Rht (reduced height) and can be considered as robust markers from a molecular breeding perspective. Physical mapping, sequencing, annotation and candidate gene validation of an NUE metaQTL on wheat chromosome 3B allowed us to propose that a glutamate synthase (GoGAT) gene that is conserved structurally and functionally at orthologous positions in rice, sorghum and maize genomes may contribute to NUE in wheat and other cereals. We propose an evolutionary model for the NUE locus in cereals from a common ancestral region, involving species specific shuffling events such as gene deletion, inversion, transposition and the invasion of repetitive elements. PMID:21251102

  13. BREAKFAST CEREALS

    This chapter written for the Encyclopedia of Food Sciences and Nutrition summarizes the Cereal Breakfast industry in world up to 2003. The areas covered are the brief history of cereal processing, their classification i.e., ready to eat or hot cereals and their processing methods. It covers the re...

  14. The International Barley Sequencing Consortium — At the Threshold of Efficient Access to the Barley Genome

    Sequencing the genome of barley, an agriculturally and industrially important cereal crop and a useful diploid model for bread wheat, has become a realistic undertaking. Important steps have been initiated to improve genomics tools, build and anchor a physical map, develop a high-density genetic ma...

  15. Rapid genome-scale mapping of chromatin accessibility in tissue

    Grøntved, Lars; Bandle, Russell; John, Sam;

    2012-01-01

    BACKGROUND: The challenge in extracting genome-wide chromatin features from limiting clinical samples poses a significant hurdle in identification of regulatory marks that impact the physiological or pathological state. Current methods that identify nuclease accessible chromatin are reliant on la...

  16. Open access to sequence: Browsing the Pichia pastoris genome

    Graf Alexandra

    2009-10-01

    Full Text Available Abstract The first genome sequences of the important yeast protein production host Pichia pastoris have been released into the public domain this spring. In order to provide the scientific community easy and versatile access to the sequence, two web-sites have been installed as a resource for genomic sequence, gene and protein information for P. pastoris: A GBrowse based genome browser was set up at http://www.pichiagenome.org and a genome portal with gene annotation and browsing functionality at http://bioinformatics.psb.ugent.be/webtools/bogas. Both websites are offering information on gene annotation and function, regulation and structure. In addition, a WiKi based platform allows all users to create additional information on genes, proteins, physiology and other items of P. pastoris research, so that the Pichia community can benefit from exchange of knowledge, data and materials.

  17. Rapid genome-scale mapping of chromatin accessibility in tissue

    Grøntved Lars

    2012-06-01

    Full Text Available Abstract Background The challenge in extracting genome-wide chromatin features from limiting clinical samples poses a significant hurdle in identification of regulatory marks that impact the physiological or pathological state. Current methods that identify nuclease accessible chromatin are reliant on large amounts of purified nuclei as starting material. This complicates analysis of trace clinical tissue samples that are often stored frozen. We have developed an alternative nuclease based procedure to bypass nuclear preparation to interrogate nuclease accessible regions in frozen tissue samples. Results Here we introduce a novel technique that specifically identifies Tissue Accessible Chromatin (TACh. The TACh method uses pulverized frozen tissue as starting material and employs one of the two robust endonucleases, Benzonase or Cyansase, which are fully active under a range of stringent conditions such as high levels of detergent and DTT. As a proof of principle we applied TACh to frozen mouse liver tissue. Combined with massive parallel sequencing TACh identifies accessible regions that are associated with euchromatic features and accessibility at transcriptional start sites correlates positively with levels of gene transcription. Accessible chromatin identified by TACh overlaps to a large extend with accessible chromatin identified by DNase I using nuclei purified from freshly isolated liver tissue as starting material. The similarities are most pronounced at highly accessible regions, whereas identification of less accessible regions tends to be more divergence between nucleases. Interestingly, we show that some of the differences between DNase I and Benzonase relate to their intrinsic sequence biases and accordingly accessibility of CpG islands is probed more efficiently using TACh. Conclusion The TACh methodology identifies accessible chromatin derived from frozen tissue samples. We propose that this simple, robust approach can be applied

  18. Future cereal starch bioengineering: Cereal ancestors encounter gene technology and designer enzymes

    Blennow, Andreas; Jensen, Susanne Langgård; Shaik, Shahnoor Sultana;

    2013-01-01

    genomes and the exploding advancement in whole genome sequencing now paves the road for identifying new genes to be exploited to generate a multitude of completely new starch functionalities directly in the cereal grain converting cereal crops to production plants. Newly released genome data from cereal...... functionalize or stabilize the starch polymers. Importantly, such products can be multifunctional in the sense of combined food/material or food/pharma purposes e.g. edible plastics, shape memory materials and cycloamylose carriers and stabilizers for diverse bioactives....

  19. Accessing integrated genomic data using GenoBase: A tutorial, Part 1

    Overbeek, R.; Price, M.

    1993-01-01

    GenoBase integrates genomic information from many existing databases, offering convenient access to the curated data. This document is the first part of a two-part tutorial on how to use GenoBase for accessing integrated genomic data.

  20. The need to redefine genomic data sharing: A focus on data accessibility

    Tempest A. van Schaik

    2014-12-01

    Full Text Available DNAdigest's mission is to investigate and address the issues hindering efficient and ethical genomic data sharing in the human genomics research community. We conducted contextual interviews with human genomics researchers in clinical, academic or industrial R&D settings about their experience with accessing and sharing human genomic data. The qualitative interviews were followed by an online survey which provided quantitative support for our findings. Here we present the generalised workflow for accessing human genomic data through both public and restricted-access repositories and discuss reported points of frustration and their possible improvements. We discuss how data discoverability and accessibility are lacking in current mechanisms and how these are the prerequisites for adoption of best practices in the research community. We summarise current initiatives related to genomic data discovery and present a new data discovery platform available at http://nucleobase.co.uk.

  1. Open access to sequence: Browsing the Pichia pastoris genome

    Graf Alexandra; Lin Yao-Cheng; Rouzé Pierre; Callewaert Nico; Mattanovich Diethard; Redl Andreas; Tiels Petra; Gasser Brigitte; De Schutter Kristof

    2009-01-01

    Abstract The first genome sequences of the important yeast protein production host Pichia pastoris have been released into the public domain this spring. In order to provide the scientific community easy and versatile access to the sequence, two web-sites have been installed as a resource for genomic sequence, gene and protein information for P. pastoris: A GBrowse based genome browser was set up at http://www.pichiagenome.org and a genome portal with gene annotation and browsing functionalit...

  2. Accessing the SEED Genome Databases via Web Services API: Tools for Programmers

    Vonstein Veronika

    2010-06-01

    Full Text Available Abstract Background The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems concept that leverages clustering between genomes and other clues to accurately and efficiently annotate microbial genomes. The backend is used as the foundation for many genome annotation tools, such as the Rapid Annotation using Subsystems Technology (RAST server for whole genome annotation, the metagenomics RAST server for random community genome annotations, and the annotation clearinghouse for exchanging annotations from different resources. In addition to a web user interface, the SEED also provides Web services based API for programmatic access to the data in the SEED, allowing the development of third-party tools and mash-ups. Results The currently exposed Web services encompass over forty different methods for accessing data related to microbial genome annotations. The Web services provide comprehensive access to the database back end, allowing any programmer access to the most consistent and accurate genome annotations available. The Web services are deployed using a platform independent service-oriented approach that allows the user to choose the most suitable programming platform for their application. Example code demonstrate that Web services can be used to access the SEED using common bioinformatics programming languages such as Perl, Python, and Java. Conclusions We present a novel approach to access the SEED database. Using Web services, a robust API for access to genomics data is provided, without requiring large volume downloads all at once. The API ensures timely access to the most current datasets available, including the new genomes as soon as they come online.

  3. 77 FR 18247 - Request for Comments on Issues of Privacy and Access With Regard to Human Genome Sequence Data

    2012-03-27

    ... HUMAN SERVICES Request for Comments on Issues of Privacy and Access With Regard to Human Genome Sequence... availability of large-scale human genome sequence data, with regard to privacy and data access and the... is examining issues of privacy and access as pertains to large-scale human genome sequence...

  4. Open versus Controlled-Access Data | Office of Cancer Genomics

    OCG employs stringent human subjects’ protection and data access policies to protect the privacy and confidentiality of the research participants. Depending on the risk of patient identification, OCG programs data are available to the scientific community in two tiers: open or controlled access. Both types of data can be accessed through its corresponding OCG program-specific data matrix or portal. Open-access Data

  5. ECR Browser: A Tool For Visualizing And Accessing Data From Comparisons Of Multiple Vertebrate Genomes

    Loots, G G; Ovcharenko, I; Stubbs, L; Nobrega, M A

    2004-01-06

    The increasing number of vertebrate genomes being sequenced in draft or finished form provide a unique opportunity to study and decode the language of DNA sequence through comparative genome alignments. However, novel tools and strategies are required to accommodate this increasing volume of genomic information and to facilitate experimental annotation of genome function. Here we present the ECR Browser, a tool that provides an easy and dynamic access to whole genome alignments of human, mouse, rat and fish sequences. This web-based tool (http://ecrbrowser.dcode.org) provides the starting point for discovery of novel genes, identification of distant gene regulatory elements and prediction of transcription factor binding sites. The genome alignment portal of the ECR Browser also permits fast and automated alignment of any user-submitted sequence to the genome of choice. The interconnection of the ECR browser with other DNA sequence analysis tools creates a unique portal for studying and exploring vertebrate genomes.

  6. Classifying Cereal Data

    The DSQ includes questions about cereal intake and allows respondents up to two responses on which cereals they consume. We classified each cereal reported first by hot or cold, and then along four dimensions: density of added sugars, whole grains, fiber, and calcium.

  7. Guide to Accessing Program Data | Office of Cancer Genomics

    Visit the Guide to Accessing TARGET Data page for a visual and interactive guide on how to access OCG program data. Although this guide uses TARGET as an example, it is also applicable to CGCI data. 

  8. The Role of Genome Accessibility in Transcription Factor Binding in Bacteria

    Wang, Harris H.

    2016-01-01

    ChIP-seq enables genome-scale identification of regulatory regions that govern gene expression. However, the biological insights generated from ChIP-seq analysis have been limited to predictions of binding sites and cooperative interactions. Furthermore, ChIP-seq data often poorly correlate with in vitro measurements or predicted motifs, highlighting that binding affinity alone is insufficient to explain transcription factor (TF)-binding in vivo. One possibility is that binding sites are not equally accessible across the genome. A more comprehensive biophysical representation of TF-binding is required to improve our ability to understand, predict, and alter gene expression. Here, we show that genome accessibility is a key parameter that impacts TF-binding in bacteria. We developed a thermodynamic model that parameterizes ChIP-seq coverage in terms of genome accessibility and binding affinity. The role of genome accessibility is validated using a large-scale ChIP-seq dataset of the M. tuberculosis regulatory network. We find that accounting for genome accessibility led to a model that explains 63% of the ChIP-seq profile variance, while a model based in motif score alone explains only 35% of the variance. Moreover, our framework enables de novo ChIP-seq peak prediction and is useful for inferring TF-binding peaks in new experimental conditions by reducing the need for additional experiments. We observe that the genome is more accessible in intergenic regions, and that increased accessibility is positively correlated with gene expression and anti-correlated with distance to the origin of replication. Our biophysically motivated model provides a more comprehensive description of TF-binding in vivo from first principles towards a better representation of gene regulation in silico, with promising applications in systems biology. PMID:27104615

  9. The Role of Genome Accessibility in Transcription Factor Binding in Bacteria.

    Gomes, Antonio L C; Wang, Harris H

    2016-04-01

    ChIP-seq enables genome-scale identification of regulatory regions that govern gene expression. However, the biological insights generated from ChIP-seq analysis have been limited to predictions of binding sites and cooperative interactions. Furthermore, ChIP-seq data often poorly correlate with in vitro measurements or predicted motifs, highlighting that binding affinity alone is insufficient to explain transcription factor (TF)-binding in vivo. One possibility is that binding sites are not equally accessible across the genome. A more comprehensive biophysical representation of TF-binding is required to improve our ability to understand, predict, and alter gene expression. Here, we show that genome accessibility is a key parameter that impacts TF-binding in bacteria. We developed a thermodynamic model that parameterizes ChIP-seq coverage in terms of genome accessibility and binding affinity. The role of genome accessibility is validated using a large-scale ChIP-seq dataset of the M. tuberculosis regulatory network. We find that accounting for genome accessibility led to a model that explains 63% of the ChIP-seq profile variance, while a model based in motif score alone explains only 35% of the variance. Moreover, our framework enables de novo ChIP-seq peak prediction and is useful for inferring TF-binding peaks in new experimental conditions by reducing the need for additional experiments. We observe that the genome is more accessible in intergenic regions, and that increased accessibility is positively correlated with gene expression and anti-correlated with distance to the origin of replication. Our biophysically motivated model provides a more comprehensive description of TF-binding in vivo from first principles towards a better representation of gene regulation in silico, with promising applications in systems biology. PMID:27104615

  10. Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks.

    Kelley, David R; Snoek, Jasper; Rinn, John L

    2016-07-01

    The complex language of eukaryotic gene expression remains incompletely understood. Despite the importance suggested by many noncoding variants statistically associated with human disease, nearly all such variants have unknown mechanisms. Here, we address this challenge using an approach based on a recent machine learning advance-deep convolutional neural networks (CNNs). We introduce the open source package Basset to apply CNNs to learn the functional activity of DNA sequences from genomics data. We trained Basset on a compendium of accessible genomic sites mapped in 164 cell types by DNase-seq, and demonstrate greater predictive accuracy than previous methods. Basset predictions for the change in accessibility between variant alleles were far greater for Genome-wide association study (GWAS) SNPs that are likely to be causal relative to nearby SNPs in linkage disequilibrium with them. With Basset, a researcher can perform a single sequencing assay in their cell type of interest and simultaneously learn that cell's chromatin accessibility code and annotate every mutation in the genome with its influence on present accessibility and latent potential for accessibility. Thus, Basset offers a powerful computational approach to annotate and interpret the noncoding genome. PMID:27197224

  11. Oxalate content of cereals and cereal products.

    Siener, Roswitha; Hönow, Ruth; Voss, Susanne; Seidler, Ana; Hesse, Albrecht

    2006-04-19

    Detailed knowledge of food oxalate content is of essential importance for dietary treatment of recurrent calcium oxalate urolithiasis. Dietary oxalate can contribute considerably to the amount of urinary oxalate excretion. Because cereal foods play an important role in daily nutrition, the soluble and total oxalate contents of various types of cereal grains, milling products, bread, pastries, and pasta were analyzed using an HPLC-enzyme-reactor method. A high total oxalate content (>50 mg/100 g) was found in whole grain wheat species Triticum durum (76.6 mg/100 g), Triticum sativum (71.2 mg/100 g), and Triticum aestivum (53.3 mg/100 g). Total oxalate content was comparably high in whole grain products of T. aestivum, that is, wheat flakes and flour, as well as in whole grain products of T. durum, that is, couscous, bulgur, and pasta. The highest oxalate content was demonstrated for wheat bran (457.4 mg/100 g). The higher oxalate content in whole grain than in refined grain cereals suggests that oxalic acid is primarily located in the outer layers of cereal grains. Cereals and cereal products contribute to the daily oxalate intake to a considerable extent. Vegetarian diets may contain high amounts of oxalate when whole grain wheat and wheat products are ingested. Recommendations for prevention of recurrence of calcium oxalate stone disease have to take into account the oxalate content of these foodstuffs. PMID:16608223

  12. CerealsDB 2.0: an integrated resource for plant breeders and scientists

    Wilkinson Paul A

    2012-09-01

    Full Text Available Abstract Background Food security is an issue that has come under renewed scrutiny amidst concerns that substantial yield increases in cereal crops are required to feed the world’s booming population. Wheat is of fundamental importance in this regard being one of the three most important crops for both human consumption and livestock feed; however, increase in crop yields have not kept pace with the demands of a growing world population. In order to address this issue, plant breeders require new molecular tools to help them identify genes for important agronomic traits that can be introduced into elite varieties. Studies of the genome using next-generation sequencing enable the identification of molecular markers such as single nucleotide polymorphisms that may be used by breeders to identify and follow genes when breeding new varieties. The development and application of next-generation sequencing technologies has made the characterisation of SNP markers in wheat relatively cheap and straightforward. There is a growing need for the widespread dissemination of this information to plant breeders. Description CerealsDB is an online resource containing a range of genomic datasets for wheat (Triticum aestivum that will assist plant breeders and scientists to select the most appropriate markers for marker assisted selection. CerealsDB includes a database which currently contains in excess of 100,000 putative varietal SNPs, of which several thousand have been experimentally validated. In addition, CerealsDB contains databases for DArT markers and EST sequences, and links to a draft genome sequence for the wheat variety Chinese Spring. Conclusion CerealsDB is an open access website that is rapidly becoming an invaluable resource within the wheat research and plant breeding communities.

  13. NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data

    Young-Joo Seol; Tae-Ho Lee; Dong-Suk Park; Chang-Kug Kim

    2016-01-01

    The National Agricultural Biotechnology Information Center developed an access portal to search, visualize, and share agricultural genomics data with a focus on South Korean information and resources. The portal features an agricultural biotechnology database containing a wide range of omics data from public and proprietary sources. We collected 28.4 TB of data from 162 agricultural organisms, with 10 types of omics data comprising next-generation sequencing sequence read archive, genome, gen...

  14. The Human Genome Project: Information access, management, and regulation. Final report

    McInerney, J.D.; Micikas, L.B.

    1996-08-31

    The Human Genome Project is a large, internationally coordinated effort in biological research directed at creating a detailed map of human DNA. This report describes the access of information, management, and regulation of the project. The project led to the development of an instructional module titled The Human Genome Project: Biology, Computers, and Privacy, designed for use in high school biology classes. The module consists of print materials and both Macintosh and Windows versions of related computer software-Appendix A contains a copy of the print materials and discs containing the two versions of the software.

  15. Cereals, Appropriability and Hierarchy

    Mayshar, Joram; Moav, Omer; Neeman, Zvika; Pascali, Luigi

    2015-01-01

    We propose that the development of social hierarchy following the Neolithic Revolution was an outcome of the ability of the emergent elite to appropriate cereal crops from farmers and not a result of land productivity, as argued by conventional theory. We argue that cereals are easier to appropriate than roots and tubers, and that regional differences in the suitability of land for different crops explain therefore differences in the formation of hierarchy and states. A simple model illustrat...

  16. Modeling branching in cereals

    Jochem B. Evers; Vos, Jan

    2013-01-01

    Cereals and grasses adapt their structural development to environmental conditions and the resources available. The primary adaptive response is a variable degree of branching, called tillering in cereals. Especially for heterogeneous plant configurations the degree of tillering varies per plant. Functional–structural plant modeling (FSPM) is a modeling approach allowing simulation of the architectural development of individual plants, culminating in the emergent behavior at the canopy level....

  17. The Ruby UCSC API: accessing the UCSC genome database using Ruby

    Mishima Hiroyuki

    2012-09-01

    Full Text Available Abstract Background The University of California, Santa Cruz (UCSC genome database is among the most used sources of genomic annotation in human and other organisms. The database offers an excellent web-based graphical user interface (the UCSC genome browser and several means for programmatic queries. A simple application programming interface (API in a scripting language aimed at the biologist was however not yet available. Here, we present the Ruby UCSC API, a library to access the UCSC genome database using Ruby. Results The API is designed as a BioRuby plug-in and built on the ActiveRecord 3 framework for the object-relational mapping, making writing SQL statements unnecessary. The current version of the API supports databases of all organisms in the UCSC genome database including human, mammals, vertebrates, deuterostomes, insects, nematodes, and yeast. The API uses the bin index—if available—when querying for genomic intervals. The API also supports genomic sequence queries using locally downloaded *.2bit files that are not stored in the official MySQL database. The API is implemented in pure Ruby and is therefore available in different environments and with different Ruby interpreters (including JRuby. Conclusions Assisted by the straightforward object-oriented design of Ruby and ActiveRecord, the Ruby UCSC API will facilitate biologists to query the UCSC genome database programmatically. The API is available through the RubyGem system. Source code and documentation are available at https://github.com/misshie/bioruby-ucsc-api/ under the Ruby license. Feedback and help is provided via the website at http://rubyucscapi.userecho.com/.

  18. Environmental Whole-Genome Amplification to Access Microbial Diversity in Contaminated Sediments

    Abulencia, C.B.; Wyborski, D.L.; Garcia, J.; Podar, M.; Chen, W.; Chang, S.H.; Chang, H.W.; Watson, D.; Brodie,E.I.; Hazen, T.C.; Keller, M.

    2005-12-10

    Low-biomass samples from nitrate and heavy metal contaminated soils yield DNA amounts that have limited use for direct, native analysis and screening. Multiple displacement amplification (MDA) using ?29 DNA polymerase was used to amplify whole genomes from environmental, contaminated, subsurface sediments. By first amplifying the genomic DNA (gDNA), biodiversity analysis and gDNA library construction of microbes found in contaminated soils were made possible. The MDA method was validated by analyzing amplified genome coverage from approximately five Escherichia coli cells, resulting in 99.2 percent genome coverage. The method was further validated by confirming overall representative species coverage and also an amplification bias when amplifying from a mix of eight known bacterial strains. We extracted DNA from samples with extremely low cell densities from a U.S. Department of Energy contaminated site. After amplification, small subunit rRNA analysis revealed relatively even distribution of species across several major phyla. Clone libraries were constructed from the amplified gDNA, and a small subset of clones was used for shotgun sequencing. BLAST analysis of the library clone sequences showed that 64.9 percent of the sequences had significant similarities to known proteins, and ''clusters of orthologous groups'' (COG) analysis revealed that more than half of the sequences from each library contained sequence similarity to known proteins. The libraries can be readily screened for native genes or any target of interest. Whole-genome amplification of metagenomic DNA from very minute microbial sources, while introducing an amplification bias, will allow access to genomic information that was not previously accessible.

  19. Functional cereals for production in new and variable climates.

    Henry, Robert J; Rangan, Parimalan; Furtado, Agnelo

    2016-04-01

    Adaptation of cereal crops to variable or changing climates requires that essential quality attributes are maintained to deliver food that will be acceptable to human consumers. Advances in cereal genomics are delivering insights into the molecular basis of nutritional and functional quality traits in cereals and defining new genetic resources. Understanding the influence of the environment on expression of these traits will support the retention of these essential functional properties during climate adaptation. New cereals for use as whole grain or ground to flour for other food products may be based upon the traditional species such as rice and wheat currently used in these food applications but may also include new options exploiting genomics tools to allow accelerated domestication of new species. PMID:26828379

  20. Development in Rice Genome Research Based on Accurate Genome Sequence

    2008-01-01

    Rice is one of the most important crops in the world. Although genetic improvement is a key technology for the acceleration of rice breeding, a lack of genome information had restricted efforts in molecular-based breeding until the completion of the high-quality rice genome sequence, which opened new opportunities for research in various areas of genomics. The syntenic relationship of the rice genome to other cereal genomes makes the rice genome invaluable for understanding how cereal genomes...

  1. Application of gamma-irradiation to cereals and cereals products

    Gamma-irradiation may be used on cereals and cereal products to control insect infestation and microbiological problems. Such problems include mould growth, mycotoxin production, pathogens, spore-forming organisms and total microbial load. Deleterious effects of gamma-irradiation arise only at relatively high dose levels with consequences on germination rate, wheat flour dough properties, and cake and noodle quality. Radiation-induced changes to starch have greater impact on behaviour of cereal products than such changes to other cereal components

  2. Zinc biofortification of cereals

    Palmgren, Michael; Clemens, Stephan; Williams, Lorraine E.;

    2008-01-01

    The goal of biofortification is to develop plants that have an increased content of bioavailable nutrients in their edible parts. Cereals serve as the main staple food for a large proportion of the world population but have the shortcoming, from a nutrition perspective, of being low in zinc and...... other essential nutrients. Major bottlenecks in plant biofortification appear to be the root-shoot barrier and - in cereals - the process of grain filling. New findings demonstrate that the root-shoot distribution of zinc is controlled mainly by heavy metal transporting P1B-ATPases and the metal...

  3. Cereal Box Totems.

    Jones, AnnMarie

    2002-01-01

    Presents a multicultural project used with fourth-grade students in which they created a three-dimensional totem pole using leftover cereal boxes. Discusses in detail how to create the totem pole. Explains that students learned about Northwest American Indians in class. (CMK)

  4. Vernalization in cereals

    Dennis, Elizabeth S.; Peacock, W. James

    2009-01-01

    How vernalization – exposure to a period of cold – induces flowering in Arabidopsis has been intensively investigated at the genetic and moleular levels. Recent papers, including one in BMC Plant Biology, shed light on changes in gene regulation that occur on vernalization in cereals.

  5. On the current status of Phakopsora pachyrhizi genome sequencing

    Marco eLoehrer

    2014-08-01

    Full Text Available Recent advances in the field of sequencing technologies and bioinformatics allow a more rapid access to genomes of non-model organisms at sinking costs. Accordingly, draft genomes of several economically important cereal rust fungi have been released in the last three years. Aside from the very recent flax rust and poplar rust draft assemblies there are no genomic data available for other dicot-infecting rust fungi. In this article we outline rust fungus sequencing efforts and comment on the current status of Phakopsora pachyrhizi (Asian soybean rust genome sequencing.

  6. Readily Accessible Multiplane Microscopy: 3D Tracking the HIV-1 Genome in Living Cells.

    Itano, Michelle S; Bleck, Marina; Johnson, Daniel S; Simon, Sanford M

    2016-02-01

    Human immunodeficiency virus (HIV)-1 infection and the associated disease AIDS are a major cause of human death worldwide with no vaccine or cure available. The trafficking of HIV-1 RNAs from sites of synthesis in the nucleus, through the cytoplasm, to sites of assembly at the plasma membrane are critical steps in HIV-1 viral replication, but are not well characterized. Here we present a broadly accessible microscopy method that captures multiple focal planes simultaneously, which allows us to image the trafficking of HIV-1 genomic RNAs with high precision. This method utilizes a customization of a commercial multichannel emission splitter that enables high-resolution 3D imaging with single-macromolecule sensitivity. We show with high temporal and spatial resolution that HIV-1 genomic RNAs are most mobile in the cytosol, and undergo confined mobility at sites along the nuclear envelope and in the nucleus and nucleolus. These provide important insights regarding the mechanism by which the HIV-1 RNA genome is transported to the sites of assembly of nascent virions. PMID:26567131

  7. Hyperphosphorylation of cereal starch

    Carciofi, Massimiliano; Shaik, Shahnoor Sultana; Jensen, Susanne Langgård;

    2011-01-01

    Plant starch is naturally phosphorylated at a fraction of the C6 and the C3 hydroxyl groups during its biosynthesis in plastids. Starch phosphate esters are important in starch metabolism and they also generate specific industrial functionality. Cereal grains starch contains little starch bound...... phosphate compared with potato tuber starch and in order to investigate the effect of increased endosperm starch phosphate, the potato starch phosphorylating enzyme glucan water dikinase (StGWD) was overexpressed specifically in the developing barley endosperm. StGWD overexpressors showed wild......-type phenotype. Transgenic cereal grains synthesized starch with higher starch bound phosphate content (7.5 (±0.67) nmol/mg) compared to control lines (0.8 (±0.05) nmol/mg) with starch granules showing altered morphology and lower melting enthalpy. Our data indicate specific action of GWD during starch...

  8. Micronutrients in cereal crops

    Hamnér, Karin

    2016-01-01

    Seven elements essential for plants are defined as micronutrients: boron (B), copper (Cu), iron (Fe), manganese (Mn), molybdenum (Mo), nickel (Ni) and zinc (Zn). Deficiency of these nutrients can cause yield losses in crops and impaired crop quality. The overall aim of this thesis work was to increase the knowledge how micronutrients in Swedish cereal crops are affected by nutrient management and soil properties in order to improve crop status and avoid yield losses. Data from long term and s...

  9. Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases.

    Stein, L D; Thierry-Mieg, J

    1998-12-01

    Much of the world's genomic data are available to the community through networked databases that are accessed via Web interfaces. Although this paradigm provides browse-level access and has greatly facilitated linking between databases, it does not provide any convenient mechanism for programmatically fetching and integrating data from diverse databases. We have created a library and an application programming interface (API) named AcePerl that provides simple, direct access to ACEDB databases from the Perl programming language. With this library, programmers and computer-savvy biologists can write software to pose complex queries on local and remote ACEDB databases, retrieve the data, integrate the results, and move data objects from one database to another. In addition, a set of Web scripts running on top of AcePerl provides Web-based browsing of any local or remote ACEDB database. AcePerl and the AceBrowser Web browser run on Unix systems and are available under a license that allows for unrestricted use and redistribution. Both packages can be downloaded from URL. A Microsoft Windows port of AcePerl is in the planning stages. PMID:9872985

  10. Open-Access Cancer Genomics - Office of Cancer Clinical Proteomics Research

    The completion of the Human Genome Project sparked a revolution in high-throughput genomics applied towards deciphering genetically complex diseases, like cancer. Now, almost 10 years later, we have a mountain of genomics data on many different cancer type

  11. Radiation disinfestation of stored cereals

    Post-harvest grain losses range world-wide between 5 and 10 percent and even 40 percent in some tropical areas where environmental conditions are favourable to cereal degradation. The grain losses during storage are of various origins: insects, microorganisms, rodents, birds. Their consequences on human health and cereal processing are of quantitative and qualitative nature

  12. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

    Guo, Shaogui; Zhang, Jianguo; Sun, Honghe;

    2013-01-01

    evolutionary scenario for the origin of the 11 watermelon chromosomes derived from a 7-chromosome paleohexaploid eudicot ancestor. Resequencing of 20 watermelon accessions representing three different C. lanatus subspecies produced numerous haplotypes and identified the extent of genetic diversity and......Watermelon, Citrullus lanatus, is an important cucurbit crop grown throughout the world. Here we report a high-quality draft genome sequence of the east Asia watermelon cultivar 97103 (2n = 2× = 22) containing 23,440 predicted protein-coding genes. Comparative genomics analysis provided an...

  13. Chromosome-based genomics in cereals

    Doležel, Jaroslav; Kubaláková, Marie; Paux, E.; Bartoš, Jan; Feuillet, C.

    2007-01-01

    Roč. 15, č. 1 (2007), s. 51-66. ISSN 0967-3849 R&D Projects: GA ČR GP521/06/P412; GA ČR(CZ) GA521/05/0257; GA ČR GA521/06/1723; GA MŠk ME 884; GA MŠk(CZ) LC06004 Institutional research plan: CEZ:AV0Z50380511 Source of funding: V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje ; V - iné verejné zdroje Keywords : Chromosome sorting * chromosome-specific BAC libraries * flow cytometry Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.469, year: 2007

  14. Genomics of Disease Resistance Loci in Cereals

    Nine resistance (R) genes have been cloned in rice, barley, and maize out of three dozen R genes cloned in other crop plants including Arabidopsis. Two of the nine genes, mlo and Hml in barley and maize, respectively, do not belong to any characterized family of R genes. Many resistance gene analogs...

  15. Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces

    Hu, Zhenbin; Mbacké, Bassirou; Perumal, Ramasamy; Guèye, Mame Codou; Sy, Ousmane; Bouchet, Sophie; Prasad, P. V. Vara; Morris, Geoffrey P.

    2015-01-01

    Background Pearl millet is a staple food for people in arid and semi-arid regions of Africa and South Asia due to its high drought tolerance and nutritional qualities. A better understanding of the genomic diversity and population structure of pearl millet germplasm is needed to support germplasm conservation and genetic improvement of this crop. Here we characterized two pearl millet diversity panels, (i) a set of global accessions from Africa, Asia, and the America, and (ii) a collection of...

  16. More protein in cereals?

    Ways in which the protein content of plant crops may be raised by the use of nuclear radiation are to be discussed at a symposium in Vienna in June next year, organized by the joint Food and Agriculture Organization/Agency Division of Atomic Energy in Food and Agriculture. Plant crops - especially cereal grains - are the basic food and protein source of most of the world's population, particularly in less-developed countries. But their natural protein content is low; increasing the quantity and nutritional quality of plant protein is potentially the most feasible way to combat widespread protein malnutrition. This improvement in seed stock can be achieved by plant breeding methods in which nuclear irradiation techniques are used to induce mutations in grain, and other isotopic techniques can be used to select only those mutants which have the desired properties. The scientists who attend the symposium will have an opportunity to review what mutation plant breeders have achieved, the application of nuclear techniques to screening for protein and amino-acid content and nutritional value, and isotopic methods which contribute to research in plant nutrition and physiology. (author)

  17. Priority regions for research on dryland cereals and legumes

    Hyman, Glenn; Barona, Elizabeth; Biradar, Chandrashekhar; Guevara, Edward; Dixon, John; Beebe, Steve; Castano, Silvia Elena; Alabi, Tunrayo; Gumma, Murali Krishna; Sivasankar, Shoba; Rivera, Ovidio; Espinosa, Herlin; Cardona, Jorge

    2016-01-01

    Dryland cereals and legumes  are important crops in farming systems across the world.  Yet they are frequently neglected among the priorities for international agricultural research and development, often due to lack of information on their magnitude and extent. Given what we know about the global distribution of dryland cereals and legumes, what regions should be high priority for research and development to improve livelihoods and food security? This research evaluated the geographic dimensions of these crops and the farming systems where they are found worldwide. The study employed geographic information science and data to assess the key farming systems and regions for these crops. Dryland cereal and legume crops should be given high priority in 18 farming systems worldwide, where their cultivated area comprises more than 160 million ha. These regions include the dryer areas of South Asia, West and East Africa, the Middle East and North Africa, Central America and other parts of Asia. These regions are prone to drought and heat stress, have limiting soil constraints, make up half of the global population and account for 60 percent of the global poor and malnourished. The dryland cereal and legume crops and farming systems merit more research and development attention to improve productivity and address development problems. This project developed an open access dataset and information resource that provides the basis for future analysis of the geographic dimensions of dryland cereals and legumes. PMID:27303632

  18. Salmonella contamination of cereal ingredients for animal feeds.

    Davies, R H; Wales, A D

    2013-10-25

    Cereal ingredients for animal feedstuffs may become contaminated by Salmonella on their farms of origin. This is often concentrated in multiple foci, owing to contamination by rodents and other wildlife which may be missed by routine sampling, and may involve serovars of particular public health significance, such as Salmonella Typhimurium (STM). The study examined such contamination in domestically-produced cereal ingredients in the United Kingdom. Cereal-producing farms with associated cattle or pig enterprises (43) and feedmills (6) were investigated, following the isolation of STM from their premises (feedmills) or STM DT104 from their livestock (farms) by routine surveillance. Cereal samples from feedmills yielded two STM isolates from the same premises, of the same phage types as were isolated from wild bird faeces at ingredient intake and product loading areas. Farm investigations identified numerous Salmonella serovars, including STM, on grain harvesting and handling equipment, in grain storage areas, and in wildlife samples. Mice were removed from one pig farm and shed Salmonella Derby and Salmonella Bovismorbificans for 10 months afterwards. Grain stores more than one kilometre away from livestock areas were rarely found to be contaminated with STM. The principal issues with Salmonella contamination of cereals appeared to be the use of livestock areas as temporary grain stores on cattle farms, and access to stored grain by wildlife and domestic animals. PMID:23915993

  19. Bases and spaces:resources on the web for accessing the draft human genome

    Semple, C.

    2000-01-01

    SUMMARY: Much is expected of the draft human genome sequence, and yet there is no central resource to host the plethora of sequence and mapping information available. Consequently, finding the most useful and reliable human genome data and resources currently available on the web can be challenging, but is not impossible.

  20. Bases and spaces: resources on the web for accessing the draft human genome

    Semple, Colin

    2000-01-01

    Much is expected of the draft human genome sequence, and yet there is no central resource to host the plethora of sequence and mapping information available. Consequently, finding the most useful and reliable human genome data and resources currently available on the web can be challenging, but is not impossible.

  1. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

    Kyunghee Kim; Sang-Choon Lee; Junki Lee; Yeisoo Yu; Kiwoung Yang; Beom-Soon Choi; Hee-Jong Koh; Nomar Espinosa Waminal; Hong-Il Choi; Nam-Hoon Kim; Woojong Jang; Hyun-Seung Park; Jonghoon Lee; Hyun Oh Lee; Ho Jun Joh

    2015-01-01

    Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary sequences used to understand plant diversity and evolution. We introduce a high-throughput method to simultaneously obtain complete cp and nR sequences using Illumina platform whole-genome sequence. We applied the method to 30 rice specimens belonging to nine Oryza species. Concurrent phylogenomic analysis using cp and nR of several of specimens of the same Oryza AA genome species provides insight into the evo...

  2. Antioxidant Properties of Whole Grain Cereals

    Čukelj, Nikolina; Novotny, Dubravka; Ćurić, Duška

    2010-01-01

    Cereals have a long history of use by humans. Cereals and cereal products are staple foods, and are important source of energy, carbohydrate, protein, fibre, vitamins (E, B) and minerals (Zn, Mg, Fe) in both developed and developing countries. The health aspects of whole grain cereals have long been known, but the antioxidant profile of whole grains has only recently been introduced to the antioxidant research community where mostly fruits and vegetables are in focus. In vitro experiments con...

  3. Cereals Market in Romania under the Impact of the Common Agricultural Policy

    Florentina CONSTANTIN

    2013-12-01

    Full Text Available The aim of this paper is to analyses the cereals market after Romania accession to European Union. Thus, I considered necessary and appropriate to achieve the dynamic analysis of production, prices, trade, consumption, and self-sufficiency that provides an overview on the evolution of the cereals market in Romania, in the European context, starting from resources representing the demand, to the uses that represent the supply. I also point out the main mechanisms and support instruments for the cereals market under the Common Agriculture Policy, in the period 2007-2013 and towards 2014-2020.

  4. El cerealémetro

    Santos López, Pascual

    2006-01-01

    Full Text Available "Apparatus for measuring wheat" was the title that Geronimo Salmerón Gómez put his invention patented in 1939. Which calls for defining the quality of wheat is marketed. Salmerón always worried about the price of bread and flour quality came to manufacture his invention usually called "Cerealémetro".

  5. Cereals Market in Romania under the Impact of the Common Agricultural Policy

    Constantin, Florentina

    2013-01-01

    The aim of this paper is to analyses the cereals market after Romania accession to European Union. Thus, I considered necessary and appropriate to achieve the dynamic analysis of production, prices, trade, consumption, and self-sufficiency that provides an overview on the evolution of the cereals market in Romania, in the European context, starting from resources representing the demand, to the uses that represent the supply. I also point out the main mechanisms and support instruments for th...

  6. The Role of Law, Institutions and Governance Process in Facilitating Access to Genomics Research

    Dedeurwaerdere, Tom

    2009-01-01

    Concerns have been expressed that gene patents might result in restricted access to research and health care. The exponential growth of patents claiming human DNA sequences might result in patent thickets, royalty stacking and, ultimately, a 'tragedy of the anti-commons' in genetics. The essays in this book explore models designed to render patented genetic inventions accessible for further use in research, diagnosis or treatment. The models include patent pools, clearing house mechanisms, op...

  7. POTENTIAL OF CEREALS AND PSEUDOCEREALS FOR LACTIC ACID FERMENTATIONS

    Ľubomír Valík

    2011-04-01

    Full Text Available Cereals and pseudocereals play a significant role in human nutrition. They are source of specific carbohydrates, proteins, lipids, fibre and wide spectrum of vitamins and minerals. Moreover, pseudocereals have a higher content of essential amino acids, e.g. lysine and tryptophan. Cereals and pseudocereals may also contain some antinutrition factors, such as phytic acid, polyphenols, trypsin inhibitors and inhibitors of α-amylase. These are responsible for reducing of protein and carbohydrate digestibility and decreasing accessibility of minerals due to complex formation. This review assesses the applications of cereals and pseudocereals in fermentation technology including the effects of lactic acid bacteria on nutrition, sensory quality and shelf-life. This work is focusing also on fermentation process of cereal matrice leading in degradation of antinutritional factors increase of nutritional value and availability of minerals, proteins and carbohydrates. Lactic acid bacteria produce many aromatic compounds that are beneficial to organoleptic atributes of the products. However, a few questions have been not answered in experiments, yet. For eample, is there any space for evaluation of their suitability to act as carriers of probiotics? Could such the attempts lead in development some special formulae suitable for consumers with food allergies or deficiencies?doi:10.5219/127

  8. Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays

    Terrence S. Furey

    2012-10-01

    Full Text Available After finishing a human genome reference sequence in 2002, the genomics community has turned to the task of interpreting it. A primary focus is to identify and characterize not only protein-coding genes, but all functional elements in the genome. The effort includes both individual investigators and large-scale projects like the Encyclopedia of DNA Elements (ENCODE project. As part of the ENCODE project, several groups have identified millions of regulatory elements in hundreds of human cell-types using DNase-seq and FAIRE-seq experiments that detect regions of nucleosome-free open chromatin. ChIP-seq experiments have also been used to discover transcription factor binding sites and map histone modifications. Nearly all identified elements are found in non-coding DNA, hypothesizing a function for previously unannotated sequence. In this review, we provide an overview of the ENCODE effort to define regulatory elements, summarize the main results, and discuss implications of the millions of regulatory elements distributed throughout the genome.

  9. Genomic selection of 1,000 biomass sorghum accessions and empirical validation

    Substantial genetic diversity exists in sorghum, a key lignocellulosic biofuel species in the United States. The implementation of genomic, genetic tools to select and enhance current germplasm will greatly accelerate new variety development. Several key questions should be considered in implementin...

  10. Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.

    Filippo Biscarini

    Full Text Available In this study we carried out a genome-wide association analysis for plant and grain morphology and root architecture in a unique panel of temperate rice accessions adapted to European pedo-climatic conditions. This is the first study to assess the association of selected phenotypic traits to specific genomic regions in the narrow genetic pool of temperate japonica. A set of 391 rice accessions were GBS-genotyped yielding-after data editing-57000 polymorphic and informative SNPS, among which 54% were in genic regions.In total, 42 significant genotype-phenotype associations were detected: 21 for plant morphology traits, 11 for grain quality traits, 10 for root architecture traits. The FDR of detected associations ranged from 3 · 10-7 to 0.92 (median: 0.25. In most cases, the significant detected associations co-localised with QTLs and candidate genes controlling the phenotypic variation of single or multiple traits. The most significant associations were those for flag leaf width on chromosome 4 (FDR = 3 · 10-7 and for plant height on chromosome 6 (FDR = 0.011.We demonstrate the effectiveness and resolution of the developed platform for high-throughput phenotyping, genotyping and GWAS in detecting major QTLs for relevant traits in rice. We identified strong associations that may be used for selection in temperate irrigated rice breeding: e.g. associations for flag leaf width, plant height, root volume and length, grain length, grain width and their ratio. Our findings pave the way to successfully exploit the narrow genetic pool of European temperate rice and to pinpoint the most relevant genetic components contributing to the adaptability and high yield of this germplasm. The generated data could be of direct use in genomic-assisted breeding strategies.

  11. Detection methods for mycotoxins in cereal grains and cereal products

    Pascale Michelangelo N.

    2009-01-01

    Full Text Available Analytical methods for mycotoxins in cereals and cereal-based products require three major steps, including extraction, clean-up (to eliminate interferences from the extract and concentrate the analyte, and detection/determination of the toxin (by using suitable analytical instruments/technologies. Clean-up is essential for the analysis of mycotoxins at trace levels, and involves the use of solid phase extraction and multifunctional (e.g. MycoSep® or immunoaffinity columns. Different chromatographic methods are commonly used for quantitative determination of mycotoxins, including gas-chromatography (GC coupled with electron capture, flame ionization or mass spectrometry (MS detectors (mainly for type-A trichothecenes, and high-performance liquid chromatography (HPLC coupled with ultraviolet, diode array, fluorescence or MS detectors. The choice of method depends on the matrix and the mycotoxin to be analyzed. Liquid chromatography-tandem mass spectrometry (LC-MS/MS is spreading rapidly as a promising technique for simultaneous screening, identification and quantitative determination of a large number of mycotoxins. In addition, commercial immunometric assays, such as enzyme-linked immunosorbent assays (ELISA, are frequently used for screening purposes as well. Recently, a variety of emerging methods have been proposed for the analysis of mycotoxins in cereals based on novel technologies, including immunochromatography (i.e. lateral flow devices, fluorescence polarization immunoassays (FPIA, infrared spectroscopy (FT-NIR, molecularly imprinted polymers (MIPs and optical biosensors.

  12. Genomics of Sorghum

    Paterson, Andrew H.

    2008-01-01

    Sorghum (Sorghum bicolor (L.) Moench) is a subject of plant genomics research based on its importance as one of the world's leading cereal crops, a biofuels crop of high and growing importance, a progenitor of one of the world's most noxious weeds, and a botanical model for many tropical grasses with complex genomes. A rich history of genome analysis, culminating in the recent complete sequencing of the genome of a leading inbred, provides a foundation for invigorating progress toward relatin...

  13. Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis

    Matthew J. Markert; Ying Zhang; Enuameh, Metewo S.; Reppert, Steven M.; Wolfe, Scot A.; Christine Merlin

    2016-01-01

    The eastern North American monarch butterfly, Danaus plexippus, is an emerging model system to study the neural, molecular, and genetic basis of animal long-distance migration and animal clockwork mechanisms. While genomic studies have provided new insight into migration-associated and circadian clock genes, the general lack of simple and versatile reverse-genetic methods has limited in vivo functional analysis of candidate genes in this species. Here, we report the establishment of highly ef...

  14. Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

    Magwa, Risper Auma; Zhao, Hu; Xing, Yongzhong

    2016-01-01

    Background Seed dormancy is an adaptive trait employed by flowering plants to avoid harsh environmental conditions for the continuity of their next generations. In cereal crops, moderate seed dormancy could help prevent pre-harvest sprouting and improve grain yield and quality. We performed a genome wide association study (GWAS) for dormancy, based on seed germination percentage (GP) in freshly harvested seeds (FHS) and after-ripened seeds (ARS) in 350 worldwide accessions that were character...

  15. Microbiological Spoilage of Cereal Products

    Cook, Frederick K.; Johnson, Billie L.

    A wide range of cereal products, including bakery items, refrigerated dough, fresh pasta products, dried cereal products, snack foods, and bakery mixes, are manufactured for food consumption. These products are subject to physical, chemical, and microbiological spoilage that affects the taste, aroma, leavening, appearance, and overall quality of the end consumer product. Microorganisms are ubiquitous in nature and have the potential for causing food spoilage and foodborne disease. However, compared to other categories of food products, bakery products rarely cause food poisoning. The heat that is applied during baking or frying usually eliminates pathogenic and spoilage microorganisms, and low moisture contributes to product stability. Nevertheless, microbiological spoilage of these products occurs, resulting in substantial economic losses.

  16. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

    Kim, Kyunghee; Lee, Sang-Choon; Lee, Junki; Yu, Yeisoo; Yang, Kiwoung; Choi, Beom-Soon; Koh, Hee-Jong; Waminal, Nomar Espinosa; Choi, Hong-Il; Kim, Nam-Hoon; Jang, Woojong; Park, Hyun-Seung; Lee, Jonghoon; Lee, Hyun Oh; Joh, Ho Jun; Lee, Hyeon Ju; Park, Jee Young; Perumal, Sampath; Jayakodi, Murukarthick; Lee, Yun Sun; Kim, Backki; Copetti, Dario; Kim, Soonok; Kim, Sunggil; Lim, Ki-Byung; Kim, Young-Dong; Lee, Jungho; Cho, Kwang-Su; Park, Beom-Seok; Wing, Rod A.; Yang, Tae-Jin

    2015-01-01

    Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary sequences used to understand plant diversity and evolution. We introduce a high-throughput method to simultaneously obtain complete cp and nR sequences using Illumina platform whole-genome sequence. We applied the method to 30 rice specimens belonging to nine Oryza species. Concurrent phylogenomic analysis using cp and nR of several of specimens of the same Oryza AA genome species provides insight into the evolution and domestication of cultivated rice, clarifying three ambiguous but important issues in the evolution of wild Oryza species. First, cp-based trees clearly classify each lineage but can be biased by inter-subspecies cross-hybridization events during speciation. Second, O. glumaepatula, a South American wild rice, includes two cytoplasm types, one of which is derived from a recent interspecies hybridization with O. longistminata. Third, the Australian O. rufipogan-type rice is a perennial form of O. meridionalis. PMID:26506948

  17. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust

    Cantu, D.; Govindarajulu, M; Kozik, A.; Wang, M.; Chen, X.; Kojima, KK; Jurka, J; Michelmore, RW; Dubcovsky, J

    2011-01-01

    Background: The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST) is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS) has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence ...

  18. Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

    Cantu, Dario; Govindarajulu, Manjula; Kozik, Alex; Wang, Meinan; Chen, Xianming; Kojima, Kenji K.; Jurka, Jerzy; Michelmore, Richard W; Dubcovsky, Jorge

    2011-01-01

    Background The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST) is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS) has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence o...

  19. A 3.5 genome equivalent multi access YAC library: construction, characterisation, screening and storage.

    Anand, R; Riley, J H; Butler, R; Smith, J C; Markham, A F

    1990-01-01

    The construction of a yeast artificial chromosome (YAC) primary gridded library of 35,000 clones from human lymphoblastoid (48,XXXX) cell line DNA is described. The average YAC size is approximately 350kb representing a greater than 3.5 times coverage of the genome. The library is stored at -70 degrees C as gridded clones on nylon filters impregnated with 20% glycerol and as glycerol suspensions of individual clones in microtitre plates providing a prolonged multi-user potential. To date we h...

  20. Knowledge of cereals among primary school students

    Murko, Ana

    2015-01-01

    In human diet cereals represent an important source of carbohydrates, proteins, vitamins, and elements, which are needed for healthy growth and development. This thesis is thus focused on knowledge of cereals among primary school students. We were assessing the knowledge of different cereals among primary school students based on their age and type of environment they live in. Beside these two variables, we took into consideration also their gender. 240 primary school students from sixth ...

  1. Genomics, Proteomics & Bioinformatics (GPB) Has a New Start——Open Access

    Jun Yu

    2012-01-01

    We are now presenting to our readers the first issue of Volume 10 of Genomics,Proteomics & Bioinformatics (GPB).It is also the first issue for the new status.GPB was founded in 2003 and published in English,focusing on research advancement in the fields of omics and bioinformatics.To ensure an international presence,GPB has its 30-50% editorial board members from outside China.From 2006,GPB has been co-published by Elsevier and Science Press,and its full-text articles are available for downloading from ScienceDirect.In 2011,GPB became a bimonthly journal.Annual downloading counts keep increasing with around 70% from outside China in 2011 (Figure 1).In addition,submissions from abroad account for 70% of the published articles after collaborating with Elsevier.

  2. Evaluation of Breakfast Cereals and Cereal Advertising by a Young Adult Audience.

    Gagnard, Alice

    A study examined the knowledge of and attitudes toward nutrition in general and specifically toward cold breakfast cereals and cereal advertising with different creative appeals. Subjects, 117 undergraduate university students, completed a questionnaire about their use of cold breakfast cereal and their sources of information about nutrition.…

  3. Diversity of tri-functional histidine biosynthesis gene (his) in cereal Phaeosphaeria species

    The full length genomic sequences of tri-functional histidine biosynthesis (his) gene were obtained and compared from cereal Phaeosphaeria species by PCR amplification. The his gene coding sequence in wheat-biotype P. nodorum (PN-w) was 2697 bp in size. The his genes in barley-biotype P. nodorum (PN...

  4. How Much Control Do Children and Adolescents Have over Genomic Testing, Parental Access to Their Results, and Parental Communication of Those Results to Others?

    Clayton, Ellen Wright

    2015-01-01

    Adolescents may often have opinions about whether they want genetic and genomic testing in both the clinic and research and about who should have access to the results. This legal analysis demonstrates that the law provides very little protection to minors' wishes. PMID:26479563

  5. Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis

    Matthew J. Markert

    2016-04-01

    Full Text Available The eastern North American monarch butterfly, Danaus plexippus, is an emerging model system to study the neural, molecular, and genetic basis of animal long-distance migration and animal clockwork mechanisms. While genomic studies have provided new insight into migration-associated and circadian clock genes, the general lack of simple and versatile reverse-genetic methods has limited in vivo functional analysis of candidate genes in this species. Here, we report the establishment of highly efficient and heritable gene mutagenesis methods in the monarch butterfly using transcriptional activator-like effector nucleases (TALENs and CRISPR-associated RNA-guided nuclease Cas9 (CRISPR/Cas9. Using two clock gene loci, cryptochrome 2 and clock (clk, as candidates, we show that both TALENs and CRISPR/Cas9 generate high-frequency nonhomologous end-joining (NHEJ-mediated mutations at targeted sites (up to 100%, and that injecting fewer than 100 eggs is sufficient to recover mutant progeny and generate monarch knockout lines in about 3 months. Our study also genetically defines monarch CLK as an essential component of the transcriptional activation complex of the circadian clock. The methods presented should not only greatly accelerate functional analyses of many aspects of monarch biology, but are also anticipated to facilitate the development of these tools in other nontraditional insect species as well as the development of homology-directed knock-ins.

  6. Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis.

    Markert, Matthew J; Zhang, Ying; Enuameh, Metewo S; Reppert, Steven M; Wolfe, Scot A; Merlin, Christine

    2016-01-01

    The eastern North American monarch butterfly, Danaus plexippus, is an emerging model system to study the neural, molecular, and genetic basis of animal long-distance migration and animal clockwork mechanisms. While genomic studies have provided new insight into migration-associated and circadian clock genes, the general lack of simple and versatile reverse-genetic methods has limited in vivo functional analysis of candidate genes in this species. Here, we report the establishment of highly efficient and heritable gene mutagenesis methods in the monarch butterfly using transcriptional activator-like effector nucleases (TALENs) and CRISPR-associated RNA-guided nuclease Cas9 (CRISPR/Cas9). Using two clock gene loci, cryptochrome 2 and clock (clk), as candidates, we show that both TALENs and CRISPR/Cas9 generate high-frequency nonhomologous end-joining (NHEJ)-mediated mutations at targeted sites (up to 100%), and that injecting fewer than 100 eggs is sufficient to recover mutant progeny and generate monarch knockout lines in about 3 months. Our study also genetically defines monarch CLK as an essential component of the transcriptional activation complex of the circadian clock. The methods presented should not only greatly accelerate functional analyses of many aspects of monarch biology, but are also anticipated to facilitate the development of these tools in other nontraditional insect species as well as the development of homology-directed knock-ins. PMID:26837953

  7. Shakespeare Cereals: A Popular Culture Exercise.

    Schiff, Peter

    1997-01-01

    Offers an exercise involving popular culture to help students experience the contemporary power of Shakespeare. Explains that after reading a Shakespeare play, students develop new cereal brands based upon the work's plot, characters, or themes, afterward naming, designing, creating, and displaying the cereal package. Combines literary analysis,…

  8. Proteinaceous inhibitors of carbohydrate-active enzymes in cereals - implication in agriculture, cereal-processing and nutrition

    Juge, Nathalie; Svensson, Birte

    2006-01-01

    Enzymes that degrade, modify, or create glycosidic bonds are involved in carbohydrate biosynthesis and remodelling. Microbial carbohydrate-active enzymes form the basis of current green technology in the food, feed, starch, paper and pulp industries and the revolution in genomics may offer long......-term gains on the quality and quantity of the raw materials. Proteinaceous inhibitors of carbohydrate-active enzymes (alpha-amylase, limit-dextrinase, polygalacturonase, pectin lyase, pectin methylesterase, invertase and xyloglucan endoglucanase) naturally occur in plants where they are involved in various...... knowledge on their structure, function, and implication in cereal processing, agriculture and nutrition. (c) 2006 Society of Chemical Industry...

  9. Cereal grains and coronary heart disease.

    Truswell, A S

    2002-01-01

    Cereal grains and their products provide around 30% of total energy intake in British adults, (much more than any of the other major food groups). Coronary heart disease (CHD) is the largest single cause of death in Britain and many other Western countries. This review examines the question whether there is a relation between cereal consumption and CHD. Several of the nutrients in cereals have known potential for reducing risk factors for CHD: the linoleic acid, fibre, vitamin E, selenium and folate. Cereals also contain phytoestrogens of the lignan family and several phenolic acids with antioxidant properties. Processing generally reduces the content of these nutrients and bioprotective substances. Although cereals at the farm gate are very low in salt, processed cereal foods, eg bread and some breakfast cereals, are high-salt foods and thus could contribute to raising blood pressure. Human experiments have clearly shown that oat fibre tends to lower plasma total and LDL cholesterol but wheat fibre does not. Rice bran and barley may also lower cholesterol but most people do not eat enough barley to have an effect. Cereal foods with low glycaemic index such as pasta and oats are beneficial for people with diabetes and might lower plasma lipids. Between 1996 and 2001 an accumulation of five very large cohort studies in the USA, Finland and Norway have all reported that subjects consuming relatively large amounts of whole grain cereals have significantly lower rates of CHD. This confirms an earlier report from a small British cohort. The protective effect does not seem to be due to cholesterol-lowering. While cohort studies have shown this consistent protective effect of whole grain cereals, there has been (only one) randomised controlled secondary prevention trial of advice to eat more cereal fibre. In this there was no reduction of the rate of reinfarction. The trial had some weaknesses, eg there were eight different diets, compliance was not checked objectively

  10. Breakfast Cereals: The Extreme Food Industry

    Connor, John M.

    1996-01-01

    The purpose of my talk today is to review several aspects of the market structure, strategic rivalry, and economic performance of the ready-to-eat cereals industry. To do so, I will at times take a long historical view of the breakfast cereals industry because many of the behaviors we observe today seem to me to be imbedded in habits of business rivalry that were learned many decades ago and yet persist today. My perspective on the RTE breakfast cereals industry is informed by nearly twenty y...

  11. Iron in Breakfast Cereal. Demonstrations for National Chemistry Week 2004

    Jacobsen, Erica K.; Maynard, James

    2004-11-01

    Cereal manufacturers have a few choices for how they include iron in their products. Some cereal manufacturers prefer to add particles of pure iron metal (called elemental iron or reduced iron) because elemental iron is stable in storage and does not affect the cereal's flavor. General Mills' brand-name "Total" is one such cereal. The addition of this strongly magnetic form of iron allows "Total" cereal to be used in the two demonstrations described in this article. In the first, a flake of "Total" cereal is inserted between the two poles of a permanent magnet. The iron in the cereal allows the flake to remain suspended between the two poles. The second uses crushed "Total" cereal and a neodymium magnet. The crushed cereal is scattered over clear Plexiglas and the magnet can be moved around underneath. This drags the iron filings through the crushed cereal.

  12. Winter and Spring Cereal Production in the Maritimes

    Nelson, Karen; MacKenzie, Joanna; Hammermeister, Andy

    2010-01-01

    Organic producers have expressed an interest in diversifying their crop rotations through the inclusion of winter cereals. Winter cereals have many potential benefits, as they provide soil cover over the winter months, can often out-compete weeds in the spring and can be harvested earlier than other cereal crops. This study aimed to evaluate the effect of management history on the performance of winter cereals versus spring cereals.

  13. Food Microscopy and the Nutritional Quality of Cereal Foods

    Yiu, Suk Hing

    1993-01-01

    The nutritional quality of cereal foods is directly related to the nature of nutrient storage in cereal grains. Most cereal nutrients, such as carbohydrates and minerals , are st ructurally bound. Processing alters the structural organization of the cereal grain. Results obtained from many nutritional studies indicate that the structure and physical form of a cereal food greatly influence the availability of its nutrients. Using oats and wheat as examples, this review demonstrates how micr...

  14. Reactivity of lipids during cereal processing

    Lehtinen, Pekka

    2003-01-01

    The study elucidates factors affecting the reactivity of lipids in multiphase food systems, such as processed cereal food products. By using oat and oat products as model materials, both enzymatic and non-enzymatic lipid reactions were studied in aqueous suspensions and in dry flour. The information obtained can be used to improve existing cereal processing schemes and to develop new processing technologies for obtaining high quality food products with enhanced shelf stability. In aqueous...

  15. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

    Dario Cantu

    Full Text Available BACKGROUND: The wheat stripe rust fungus (Puccinia striiformis f. sp. tritici, PST is responsible for significant yield losses in wheat production worldwide. In spite of its economic importance, the PST genomic sequence is not currently available. Fortunately Next Generation Sequencing (NGS has radically improved sequencing speed and efficiency with a great reduction in costs compared to traditional sequencing technologies. We used Illumina sequencing to rapidly access the genomic sequence of the highly virulent PST race 130 (PST-130. METHODOLOGY/PRINCIPAL FINDINGS: We obtained nearly 80 million high quality paired-end reads (>50x coverage that were assembled into 29,178 contigs (64.8 Mb, which provide an estimated coverage of at least 88% of the PST genes and are available through GenBank. Extensive micro-synteny with the Puccinia graminis f. sp. tritici (PGTG genome and high sequence similarity with annotated PGTG genes support the quality of the PST-130 contigs. We characterized the transposable elements present in the PST-130 contigs and using an ab initio gene prediction program we identified and tentatively annotated 22,815 putative coding sequences. We provide examples on the use of comparative approaches to improve gene annotation for both PST and PGTG and to identify candidate effectors. Finally, the assembled contigs provided an inventory of PST repetitive elements, which were annotated and deposited in Repbase. CONCLUSIONS/SIGNIFICANCE: The assembly of the PST-130 genome and the predicted proteins provide useful resources to rapidly identify and clone PST genes and their regulatory regions. Although the automatic gene prediction has limitations, we show that a comparative genomics approach using multiple rust species can greatly improve the quality of gene annotation in these species. The PST-130 sequence will also be useful for comparative studies within PST as more races are sequenced. This study illustrates the power of NGS for

  16. Carotenoids in Staple Cereals: Metabolism, Regulation, and Genetic Manipulation.

    Zhai, Shengnan; Xia, Xianchun; He, Zhonghu

    2016-01-01

    Carotenoids play a critical role in animal and human health. Animals and humans are unable to synthesize carotenoids de novo, and therefore rely upon diet as sources of these compounds. However, major staple cereals often contain only small amounts of carotenoids in their grains. Consequently, there is considerable interest in genetic manipulation of carotenoid content in cereal grain. In this review, we focus on carotenoid metabolism and regulation in non-green plant tissues, as well as genetic manipulation in staple cereals such as rice, maize, and wheat. Significant progress has been made in three aspects: (1) seven carotenogenes play vital roles in carotenoid regulation in non-green plant tissues, including 1-deoxyxylulose-5-phosphate synthase influencing isoprenoid precursor supply, phytoene synthase, β-cyclase, and ε-cyclase controlling biosynthesis, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase and carotenoid cleavage dioxygenases responsible for degradation, and orange gene conditioning sequestration sink; (2) provitamin A-biofortified crops, such as rice and maize, were developed by either metabolic engineering or marker-assisted breeding; (3) quantitative trait loci for carotenoid content on chromosomes 3B, 7A, and 7B were consistently identified, eight carotenogenes including 23 loci were detected, and 10 gene-specific markers for carotenoid accumulation were developed and applied in wheat improvement. A comprehensive and deeper understanding of the regulatory mechanisms of carotenoid metabolism in crops will be beneficial in improving our precision in improving carotenoid contents. Genomic selection and gene editing are emerging as transformative technologies for provitamin A biofortification. PMID:27559339

  17. Carotenoids in Staple Cereals: Metabolism, Regulation, and Genetic Manipulation

    Zhai, Shengnan; Xia, Xianchun; He, Zhonghu

    2016-01-01

    Carotenoids play a critical role in animal and human health. Animals and humans are unable to synthesize carotenoids de novo, and therefore rely upon diet as sources of these compounds. However, major staple cereals often contain only small amounts of carotenoids in their grains. Consequently, there is considerable interest in genetic manipulation of carotenoid content in cereal grain. In this review, we focus on carotenoid metabolism and regulation in non-green plant tissues, as well as genetic manipulation in staple cereals such as rice, maize, and wheat. Significant progress has been made in three aspects: (1) seven carotenogenes play vital roles in carotenoid regulation in non-green plant tissues, including 1-deoxyxylulose-5-phosphate synthase influencing isoprenoid precursor supply, phytoene synthase, β-cyclase, and ε-cyclase controlling biosynthesis, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase and carotenoid cleavage dioxygenases responsible for degradation, and orange gene conditioning sequestration sink; (2) provitamin A-biofortified crops, such as rice and maize, were developed by either metabolic engineering or marker-assisted breeding; (3) quantitative trait loci for carotenoid content on chromosomes 3B, 7A, and 7B were consistently identified, eight carotenogenes including 23 loci were detected, and 10 gene-specific markers for carotenoid accumulation were developed and applied in wheat improvement. A comprehensive and deeper understanding of the regulatory mechanisms of carotenoid metabolism in crops will be beneficial in improving our precision in improving carotenoid contents. Genomic selection and gene editing are emerging as transformative technologies for provitamin A biofortification. PMID:27559339

  18. Application of cereals and cereal components in functional foods: a review.

    Charalampopoulos, D; Wang, R; Pandiella, S S; Webb, C

    2002-11-15

    The food industry is directing new product development towards the area of functional foods and functional food ingredients due to consumers' demand for healthier foods. In this respect, probiotic dairy foods containing human-derived Lactobacillus and Bifidobacterium species and prebiotic food formulations containing ingredients that cannot be digested by the human host in the upper gastrointestinal tract and can selectively stimulate the growth of one or a limited number of colonic bacteria have been recently introduced into the market. The aim of these products is to affect beneficially the gut microbial composition and activities. Cereals offer another alternative for the production of functional foods. The multiple beneficial effects of cereals can be exploited in different ways leading to the design of novel cereal foods or cereal ingredients that can target specific populations. Cereals can be used as fermentable substrates for the growth of probiotic microorganisms. The main parameters that have to be considered are the composition and processing of the cereal grains, the substrate formulation, the growth capability and productivity of the starter culture, the stability of the probiotic strain during storage, the organoleptic properties and the nutritional value of the final product. Additionally, cereals can be used as sources of nondigestible carbohydrates that besides promoting several beneficial physiological effects can also selectively stimulate the growth of lactobacilli and bifidobacteria present in the colon and act as prebiotics. Cereals contain water-soluble fibre, such as beta-glucan and arabinoxylan, oilgosaccharides, such as galacto- and fructo-oligosaccharides and resistant starch, which have been suggested to fulfil the prebiotic concept. Separation of specific fractions of fibre from different cereal varieties or cereal by-products, according to the knowledge of fibre distribution in cereal grains, could be achieved through processing

  19. Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice

    Grosse Ivo

    2009-08-01

    Full Text Available Abstract Background Well preserved genomic colinearity among agronomically important grass species such as rice, maize, Sorghum, wheat and barley provides access to whole-genome structure information even in species lacking a reference genome sequence. We investigated footprints of whole-genome duplication (WGD in barley that shaped the cereal ancestor genome by analyzing shared synteny with rice using a ~2000 gene-based barley genetic map and the rice genome reference sequence. Results Based on a recent annotation of the rice genome, we reviewed the WGD in rice and identified 24 pairs of duplicated genomic segments involving 70% of the rice genome. Using 968 putative orthologous gene pairs, synteny covered 89% of the barley genetic map and 63% of the rice genome. We found strong evidence for seven shared segmental genome duplications, corresponding to more than 50% of the segmental genome duplications previously determined in rice. Analysis of synonymous substitution rates (Ks suggested that shared duplications originated before the divergence of these two species. While major genome rearrangements affected the ancestral genome of both species, small paracentric inversions were found to be species specific. Conclusion We provide a thorough analysis of comparative genome evolution between barley and rice. A barley genetic map of approximately 2000 non-redundant EST sequences provided sufficient density to allow a detailed view of shared synteny with the rice genome. Using an indirect approach that included the localization of WGD-derived duplicated genome segments in the rice genome, we determined the current extent of shared WGD-derived genome duplications that occurred prior to species divergence.

  20. Identification and complete genome sequencing of paramyxoviruses in mallard ducks (Anas platyrhynchos using random access amplification and next generation sequencing technologies

    van den Berg Thierry

    2011-10-01

    Full Text Available Abstract Background During a wildlife screening program for avian influenza A viruses (AIV and avian paramyxoviruses (APMV in Belgium, we isolated two hemagglutinating agents from pools of cloacal swabs of wild mallards (Anas platyrhynchos caught in a single sampling site at two different times. AIV and APMV1 were excluded using hemagglutination inhibition (HI testing and specific real-time RT-PCR tests. Methods To refine the virological identification of APMV2-10 realized by HI subtyping tests and in lack of validated molecular tests for APMV2-10, random access amplification was used in combination with next generation sequencing for the sequence independent identification of the viruses and the determination of their genomes. Results Three different APMVs were identified. From one pooled sample, the complete genome sequence (15054 nucleotides of an APMV4 was assembled from the random sequences. From the second pooled sample, the nearly complete genome sequence of an APMV6 (genome size of 16236 nucleotides was determined, as well as a partial sequence for an APMV4. This APMV4 was closely related but not identical to the APMV4 isolated from the first sample. Although a cross-reactivity with other APMV subtypes did not allow formal identification, the HI subtyping revealed APMV4 and APMV6 in the respective pooled samples but failed to identify the co-infecting APMV4 in the APMV6 infected pool. Conclusions These data further contribute to the knowledge about the genetic diversity within the serotypes APMV4 and 6, and confirm the limited sensitivity of the HI subtyping test. Moreover, this study demonstrates the value of a random access nucleic acid amplification method in combination with massive parallel sequencing. Using only a moderate and economical sequencing effort, the characterization and full genome sequencing of APMVs can be obtained, including the identification of viruses in mixed infections.

  1. Faecal bulking efficacy of Australasian breakfast cereals.

    Monro, John A

    2002-01-01

    Faecal bulk may play an important role in preventing a range of disorders of the large bowel, but as yet there is little information available on the relative faecal bulking capacities of various foods. Breakfast cereals are often promoted as a good source of potential bulk for 'inner health' because they provide dietary fibre, but their relative abilities to provide faecal bulk per se have not been described. The faecal bulking efficacy of 28 representative Australasian breakfast cereals was therefore measured. A rat model developed for the purpose, and shown to give similar responses as humans to cereal fibres, was used to measure faecal bulking efficacy as increases in fully hydrated faecal weight/100 g diet, based on precise measurements of food intake, faecal dry matter output and faecal water-holding capacity (g water held without stress/g faecal dry matter). Compared to a baseline diet containing 50% sucrose, increments in hydrated faecal weight due to 50% breakfast cereal ranged from slightly negative (Cornflakes, -2 g/100 g diet) to about 80 g/100 g diet (San Bran). Most breakfast cereals increased hydrated faecal weight by between 10 and 20 g/100 g diet from a baseline of 21 +/- 1.5 g/100 g diet, but four products containing high levels of wheat bran had an exceptionally large impact on hydrated faecal weight (increment > 20 g/100 g diet), and the changes resulted more from relative changes in dry matter output than in faecal water retention/gram. However, as faecal water retention was about 2.5 g water/g faecal dry matter on average, increases in dry matter represented large increases in faecal water load. Faecal bulking indices (FBI) for most of the breakfast cereals were less than 20 (wheat bran = 100). The content of wheat bran equivalents for faecal bulk (WBE(fb)) in the breakfast cereals was calculated from FBI. Most breakfast cereals contributed, per serve, less than 10% of a theoretical daily reference value for faecal bulk (DRV(fb) = 63 WBE

  2. Cereals for the semi-arid tropics

    The region of semi-arid tropics is the most famine prone area of the world. This region with nearly one billion people extends across some 20 million square kilometres. Major domesticated cereals adapted to semi-arid regions are sorghum (Sorghum bicolor (L.) Moench), foxtail millet (Setaria italica (L.) P. Beauv.) and pearl millet (Pennisetum glaucum (L.) R. Br.). Several minor cereals are grown as speciality crops, or harvested in the wild in times of severe drought and scarcity. Important in the African Sahel are the fonios Digitaria iburua Stapf, D. exilis (Kapist) Stapf and Brachiaria deflexa (Schumach). C.E. Hubbard. These species are aggressive colonizers and are commonly encouraged as weeds in cultivated fields. Sown genotypes differ from their close wild relatives primarily in the lack of efficient natural seed dispersal. The fonios lend themselves to rapid domestication. Several wild cereals extend well beyond the limits of agriculture into the Sahara. Commonly harvested are the perennial Stipagrostis pungens and Panicum turgidum, and the annual Cenchrus biflorus (kram-kram). Kram-kram yields well under extreme heat and drought stress, and holds promise as a domesticated cereal. Sauwi millet (Panicum sonorum) is promising cereal in arid northwestern Mexico. (author). 31 refs

  3. The human genome project: Information management, access, and regulation. Technical progress report, 1 April--31 August 1993

    McInerney, J.D.; Micikas, L.B.

    1993-09-10

    Efforts are described to prepare educational materials including computer based as well as conventional type teaching materials for training interested high school and elementary students in aspects of Human Genome Project.

  4. Developments in breeding cereals for organic agriculture

    Wolfe, M.S.; Baresel, J.P.; Desclaux, D.;

    2008-01-01

    The need for increased sustainability of performance in cereal varieties, particularly in organic agriculture (OA), is limited by the lack of varieties adapted to organic conditions. Here, the needs for breeding are reviewed in the context of three major marketing types, global, regional, local, in...... characteristics into the crop can be helped by diversification within the crop, allowing complementation and compensation among plants. Although the problems of breeding cereals for organic farming systems are large, there is encouraging progress. This lies in applications of ecology to organic crop production...

  5. Monitoring the Expression Profiles of Cereal Crops Seedlings by Using Rice cDNA Microarray

    SUN Liang-xian; DONG Hai-tao; LI De-bao

    2004-01-01

    Through exploiting the high homology of cereal crop genes, membranous cDNA microarrays containing 3 311 unique rice transcripts (including 1 639 endosperm-derived transcripts and 1 672 mature stem-derived transcripts) were used for monitoring the expression profiles of 1-leaf stage seedlings of 4 cereal crop species: rice, maize, sorghum and barley. After hybridizing with [α-33p] labeled probes, 73.6 % of the arrayed genes generated reliable signals in all of the four cereal crops. Further analysis revealed that among the arrayed genes, a higher percentage of the endosperm-derived transcripts (86.6 %) expressed than that of the mature stem-derived genes (60.9 %), indicating that most of the endosperm expressed genes functioned in young seedlings while considerable amount of mature stem tissue expressed genes did not express. These results also inferred that some genes might function only at certain developmental stages. By comparing the obtained profiles, 84 genes were identified constantly expressed in all the four cereal crops. Many housekeeping genes, such as polyubiquitin, ubiquitin conjugating enzyme and ribosomal proteins were included in this catalogue. The experiment also identified 14 rice seedling specifically expressed genes, including 3 biotic and abiotic stress induced genes and 1 apoptosis suppressor encoding gene Bax inhibitor-1. This investigation provided invaluable information for comparative genomics of gramineae members.

  6. Monitoring the Expression Profiles of Cereal Crops Seedlings by Using Rice cDNA Microarray

    SUNLiang-xian; DONGHai-tao; LIDe-bao

    2004-01-01

    Through exploiting the high homology of cereal crop genes, membranous cDNA microarrays containing 3311 unique rice transcripts (including 1 639 cndosperm-derived transcripts and 1 672 mature stem-derived transcripts) were used for monitoring the expression profiles of l-leaf stage seedlings of 4 cereal crop species: rice, maize, sorghum and barley. After hybridizing with [P] labeled probes, 73.6 % of the arrayed genes generated reliable signals in all of the four cereal crops. Further analysis revealed that among the arrayed genes, a higher percentage of the endosperm-derived transcripts (86.6%) expressed than that of the mature stem-derived genes (60.9 %), indicating that most of the endosperm expressed genes functioned in young seedlings whilc considerable amount of mature stem tissue expressed genes did not express. These results also inferred that some genes might function only at certain developmental stages. By comparing the obtained profdes, 84 genes were identified constantly expressed in all the four cereal crops. Many housekeeping genes, such as polyubiquitin, ubiquitin conjugating enzyme and ribosomal proteins were included in this catalogue. The experiment also identified 14 rice seedling specifically expressed genes, including 3 biotic and abiotic stress induced genes and 1 apoptosis suppressor encoding gene Bax inhibitor-1. This investigation provided invaluable information for comparative genomics of gramineae members.

  7. Cereal Box Design: An Interdisciplinary Graphics Activity

    Fitzgerald, Mike; Tsosie, Teri

    2012-01-01

    The cereal box design activity is intriguing both for its simplicity and the resourcefulness that it can generate in young people. Also, it lends itself to a variety of curriculums. It covers both consumerism and Design for the Environment (DfE) concepts broadly and in depth. The activity introduces a wide range of topics. They include graphic…

  8. Induced mutants for cereal grain protein improvement

    Out of 17 papers and one summary presented, six dealing with the genetic improvement of seed protein using ionizing radiations fall within the INIS subject scope. Other topics discussed were non-radiation induced mutants used for cereal grain protein improvement

  9. Predictive Modelling of Mycotoxins in Cereals

    Fels, van der H.J.; Liu, C.

    2015-01-01

    In dit artikel worden de samenvattingen van de presentaties tijdens de 30e bijeenkomst van de Werkgroep Fusarium weergegeven. De onderwerpen zijn: Predictive Modelling of Mycotoxins in Cereals.; Microbial degradation of DON.; Exposure to green leaf volatiles primes wheat against FHB but boosts produ

  10. Balkan cereals genetic resources in collection of Vavilov Institute of Plant Industry and main directions of cereals breeding in Russia

    LOSKUTOV, Igor

    2014-01-01

    Analysis of information about Balkan cereals collection in VIR passport database is presented. The paper offers the long-term data on the collection of cereal forage crops (barley, oat) studied under diverse conditions at experiment stations of VIR. The selected sources of economically important traits that can be used for main direction of cereal forages breeding are presented

  11. GRASP: analysis of genotype–phenotype results from 1390 genome-wide association studies and corresponding open access database

    Leslie, Richard; O’Donnell, Christopher J.; Johnson, Andrew D.

    2014-01-01

    Summary: We created a deeply extracted and annotated database of genome-wide association studies (GWAS) results. GRASP v1.0 contains >6.2 million SNP-phenotype association from among 1390 GWAS studies. We re-annotated GWAS results with 16 annotation sources including some rarely compared to GWAS results (e.g. RNAediting sites, lincRNAs, PTMs).

  12. Current status of genetics and genomics of reared penaeid shrimp: information relevant to access and benefit sharing.

    Andriantahina, Farafidy; Liu, Xiaolin; Feng, Tingting; Xiang, Jianhai

    2013-08-01

    At present, research and progress in shrimp genomics and genetics show significant developments. Shrimp genetics and genomics also show immense potential for an increased production in a way that meets shrimp culture progress goals for the third millennium. This review article aims to provide an overview of its current status and future direction, discusses questions that need focused research to address them, and summarizes areas where genetics and genomics knowledge can make a positive difference to shrimp culture sustainability. Sustainable progress of penaeid shrimps will depend upon feasible solutions for environmental, research, economic, consumer problems, proper development, and planning policy enforcement. It is recommended that increased funding for biotechnology research and progress be directed to expand worldwide commercial shrimp culture and address environmental and public health issues. For any researcher or shrimp company member who has attempted to or whom would like to thoroughly search the literature to gain a complete understanding of the current state of shrimp genetics and genomics, this publication will be an invaluable source of reference materials, some of which is reported here for the first time. PMID:23529408

  13. New Local, National and Regional Cereal Price Indices for Improved Identification of Food Insecurity

    Brown, Molly E.; Tondel, Fabien; Thorne, Jennifer A.; Essam, Timothy; Mann, Bristol F.; Stabler, Blake; Eilerts, Gary

    2011-01-01

    Large price increases over a short time period can be indicative of a deteriorating food security situation. Food price indices developed by the United Nations Food and Agriculture Organization (FAO) are used to monitor food price trends at a global level, but largely reflect supply and demand conditions in export markets. However, reporting by the United States Agency for International Development (USAID)'s Famine Early Warning Systems Network (FEWS NET) indicates that staple cereal prices in many markets of the developing world, especially in surplus-producing areas, often have a delayed and variable response to international export market price trends. Here we present new price indices compiled for improved food security monitoring and assessment, and specifically for monitoring conditions of food access across diverse food insecure regions. We found that cereal price indices constructed using market prices within a food insecure region showed significant differences from the international cereals price, and had a variable price dispersion across markets within each marketshed. Using satellite-derived remote sensing information that estimates local production and the FAO Cereals Index as predictors, we were able to forecast movements of the local or national price indices in the remote, arid and semi-arid countries of the 38 countries examined. This work supports the need for improved decision-making about targeted aid and humanitarian relief, by providing earlier early warning of food security crises.

  14. Can genomics boost productivity of orphan crops?

    Advances in genomics over the past 20 years have enhanced the precision and efficiency of breeding programs in many temperate cereal crops. One of the first applications of genomics-assisted breeding has been the introgression of loci for resistance to biotic stresses or major quantitative trait loc...

  15. Cereal grains for nutrition and health benefits

    Björck, Inger; Östman, Elin; Kristensen, Mette;

    2012-01-01

    Epidemiological studies have linked whole grain intake to the prevention of the metabolic syndrome, obesity and associated chronic diseases such as CVD and T2D. The Nutrition module within the HEALTHGRAIN project, included 10 partners and undertook in vitro, animal and human in vivo studies with...... the overall aims of elucidating the components and mechanisms underlying the health benefits of cereal grains. This review summarises the major outcomes of these studies, including yet unpublished findings. © 2011 Elsevier Ltd....

  16. Genetic erosion of diversity in cereals

    Petrović Sofija; Dimitrijević Miodrag

    2012-01-01

    Cereals play an important role in human nutrition. Consequently, one of the main goals in breeding is to obtain varieties with high genetic potential for yield. Modern agricultural production includes the expansion of intensive varieties over large areas that lead to narrow selection criteria in breeding programs. The consequence is a drastic reduction in the number of species and genotypes (genetic erosion), or harming biological diversity of local populat...

  17. Nutritional quality of Australian breakfast cereals. Are they improving?

    Louie, Jimmy Chun Yu; Dunford, Elizabeth K; Walker, Karen Z; Gill, Timothy P

    2012-10-01

    The nutritional quality of Australian breakfast cereals is not systematically monitored despite the importance of breakfast for general health. We examined whether the nutritional quality of Australian breakfast cereals has improved between 2004 and 2010, and whether any change could be detected after the introduction of Daily Intake Guide (DIG) front-of-pack labelling. Supermarket surveys were conducted in 2004 and 2010 using the same methodology to collect information from the nutrition information panels of Australian breakfast cereals and the nutrient content of cereals was compared by year. Breakfast cereals with and without DIG labelling in 2010 were also compared. Nutritional quality was assessed using UK Traffic Light criteria. No significant difference was detected in nutritional composition of breakfast cereals between 2004 and 2010. There was no notable improvement in nutritional composition of breakfast cereals marketed as the same product in both years. Overall there has been little improvement in the nutritional quality of Australian breakfast cereals in the 6 year period. A large proportion of Australian breakfast cereals were considered high sugar. In conclusion, the introduction of DIG labelling does not appear to have promoted product reformulation, and breakfast cereals carrying DIG labels were not consistently healthier. PMID:22728950

  18. Evolutionary ecology of the wild cereals

    Blumler, M.A.

    1995-12-31

    The evolutionary ecology of the Near Eastern wild cereal grasses sheds light on the environmental conditions under which the Neolithic Revolution took place. Globally, as well as in the Near East, the annual habit, large seed size, and seasonal drought are associated with each other and with agricultural origins. The connection with agricultural appears to involve ease of cultivation and necessity for seasonal storage rather than hunter-gatherer preference for large seeds. The Near Eastern wild cereal species separate ecologically according to seasonality of precipitation, primarily, though there may also be minor differences in temperature and edaphic tolerances. This reflects the evolution, over the course of the Quaternary, of species with increased seed size in response to increasingly pronounced seasonal drought. Wild emmer and wild barley, the progenitors of perhaps the very first domesticates, are evolutionary monstrosities that represent the culmination of this trend. The possibly complex changes in seasonality, aridity, and atmospheric CO2 during the millenia leading up to the Neolithic should have produced equally complex, but to some extent predictable, changes in the abundance and distribution of the different wild cereal species.

  19. Therapeutic Effect of Cereal Grains: A Review.

    Singhal, Poonam; Kaushik, Geetanjali

    2016-04-01

    Over the last few decades, life style changes have resulted in drastic increase in the incidence of diabetes all over the world, especially in the developing countries. Oral hypoglycemic agents and insulin form the main stay in controlling diabetes but they have prominent side effects and fail to significantly alter the course of diabetic complications. Appropriate diet and exercise programs that form a part of lifestyle modifications have proven to be greatly effective in the management of this disease. Dietary therapy is showing a bright future in the prevention and treatment of diabetes. Cereal grains which form the staple diet for humans in most of the countries are increasingly being used to treat diabetes and other associated disorders in view of their anti-diabetic and anti-lipidemic potential. Given this background, this paper reviews the possible mechanisms of lowering blood sugar and cholesterol levels possessed by various commonly consumed cereal grains. It is concluded that cereal grains are not only the potential sources of energy but also possess the therapeutic role in preventing metabolic disorders and decreasing the risk factors for cardiovascular and renal diseases. PMID:25746052

  20. Cereal Production Ratio and NDVI in Spain

    Saa-Requejo, Antonio; Recuero, Laura; Palacios, Alicia; Díaz-Ambrona, Carlos G. H.; Tarquis, Ana M.

    2014-05-01

    Droughts are long-term phenomena affecting large regions causing significant damages both in human lives and economic losses. The use of remote sensing has proved to be very important in monitoring the growth of agricultural crops and trying to asses weather impact on crop loss. Several indices has been developed based in remote sensing data being one of them the normalized difference vegetation index (NDVI). In this study we have focus to know the correlation between NDVI data and the looses of rain fed cereal in the Spanish area where this crop is majority. For this propose data from drought damage in cereal come from the pool of agricultural insurance in Spain (AGROSEGURO) including 2007/2008 to 2011/2012 (five agricultural campaigns). This data is given as a ratio between drought party claims against the insured value of production aggregated at the agrarian region level. Medium resolution (500x500 m2) MODIS images were used during the same campaigns to estimate the eight-day composites NDVI at these locations. The NDVI values are accumulated following the normal cycle of the cereal taking in account the sowing date at different sites. At the same time, CORINE Land Cover (2006) was used to classify the pixels belonging to rain fed cereal use including a set of conditions such as pixels showing dry during summer, area in which there has been no change of use. Fallow presence is studied with particular attention as it imposes an inter annual variation between crop and bare soil and causes decreases in greenness in a pixel and mix both situations. This is more complex in the situation in which the avoid fallow and a continuous monoculture is performed. The results shown that around 40% of the area is subject to the regime of fallow while 60% have growing every year. In addition, another variation is detected if the year is humid (decrease of fallow) or dry (increase of fallow). The level of correlation between the drought damage ratios and cumulative NDVI for the

  1. The coffee genome hub : a resource for coffee genomes

    Dereeper, Alexis; Bocs, Stéphanie; Rouard, Mathieu; Guignon, Valentin; Ravel, Sébastien; Tranchant-Dubreuil, Christine; Poncet, Valérie; Garsmeur, Olivier; Lashermes, Philippe; Droc, Gaëtan

    2015-01-01

    The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub ( ext-link-type="uri" xlink:href="http://coffee-genome.org/" xlink:type="simple">http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilit...

  2. {sup 210}Pb and {sup 210}Po in Finnish cereals

    Turtiainen, Tuukka, E-mail: tuukka.turtiainen@stuk.f [STUK, Radiation and Nuclear Safety Authority, P.O. Box 14, 00881 Helsinki (Finland); Kostiainen, Eila, E-mail: eila.kostiainen@stuk.f [STUK, Radiation and Nuclear Safety Authority, P.O. Box 14, 00881 Helsinki (Finland); Hallikainen, Anja, E-mail: anja.hallikainen@evira.f [Finnish Food Safety Authority Evira, Mustialankatu 3, 00790 Helsinki (Finland)

    2011-05-15

    A survey was carried out on the activity concentrations of {sup 210}Pb and {sup 210}Po in cereal grains produced in Finland. The cereal species were wheat (Triticum aestivum), rye (Secale cereale), oats (Avena sativa) and barley (Hordeum vulgare), which account for 90% of the Finnish consumption of cereal products. The survey consisted of 18 flour and 13 unprocessed cereal samples and one hulled grain sample from 22 flour mills. According to the results, the mean {sup 210}Pb/{sup 210}Po concentrations in wheat grains, wheat flour, rye flour, oat grains and barley grains were 0.29, 0.12, 0.29, 0.36 and 0.36 Bq kg{sup -1}, respectively. Combined with the consumption rates of the products, we assess that the mean effective doses from {sup 210}Pb and {sup 210}Po in cereal products for the adult male and female population are 22 and 17 {mu}Sv per year, respectively.

  3. Processing and storage of Indian cereal and cereal products alters its resistant starch content

    Vaidya, Ruchi H.; Sheth, Mini K.

    2010-01-01

    Resistant Starch (RS) is prebiotic in nature and is defined as the sum of starch and products of starch degradation not absorbed in small intestine of healthy individuals but later are fermented by natural microflora of the colon to produce short chain fatty acids. RS acts as a nutraceutical and its consumption leads to many health benefits. The aim of the study is to analyze the RS content in raw and processed cereals and cereal products and determine various processing and storage effects o...

  4. Effects of climate variation on winter cereal production in Spain

    C. Rodríguez-Puebla; Ayuso, S. M.; Frías, M. D.; García-Casado, L. A.

    2007-01-01

    Climate variables responsible for inter-annual variations in the winter cereal yield in Spain were identified and climate information was translated into crop production. Empirical orthogonal functions and correlation analyses were applied to regional and large-scale climate variables to ascertain the links between climate and winter cereal yield. Interactions between climate and winter cereal productivity in Spain can be summarized as follows: the start of the growing season depends on minim...

  5. Brand loyalty of cereal products / Aaron Lekatjo Mazibuko

    Mazibuko, Aaron Lekatjo

    2010-01-01

    The South African breakfast market consists of several brand products for cereal products, and some of the products are produced locally while others are imported. Cereal products are classified under fast moving consumer goods (FMCG). The majority of the cereal products are easy to serve. The following brands are common in South Africa and have been listed according to their popularity with consumers: Kellogg's Corn Flakes, Kellog's Special K, Jungle Oats, Cheerios and Weet Bix. Kellog...

  6. A cross-cultural study of cereal foods' quality perception

    Krutulyte, Rasa; Costa, Ana I.; Grunert, Klaus G.

    2006-01-01

    Cereal foods' production and use show substantial heterogeneity across Europe. For a category central in most EU diets, cereal foods' quality perception is, nevertheless, surprisingly understudied. With this in mind, 357 Danish, Lithuanian and Portuguese citizens were inquired about the importance of several cues and dimensions in their evaluation of the perceived quality of bread, cookies, breakfast cereals, pasta and vodka. Portuguese and Lithuanians consistently gave a significantly higher...

  7. Intercropping of Cereals and Legumes for Forage Production

    Hamdollah ESKANDARI; Ghanbari, Ahmad; Abdollah JAVANMARD

    2009-01-01

    Cereals are high important in feeding ruminant animals for their high dry matter production and low cost. However, cereals forage is poor in protein content which shows their low quality and nutritive value. Regarding to high feed costs of protein supplementations, legumes can be used in livestock nutrition for their high protein content and, thus, providing cost saving. Since legumes have low dry matter yield, acceptable forage yield and quality can obtained from intercropping of cereals and...

  8. Significance of coarse cereals in health and nutrition: a review

    Kaur, Kiran Deep; Jha, Alok; Sabikhi, Latha; A. K. Singh

    2012-01-01

    This review assesses the nutritional attributes of coarse cereals and also their utilization as food and as formulated foods. These cereals are laden with phytochemicals including phenolic acids, tannins, anthocyanins, phytosterols, avenenathramides and policosanols. They possess high antioxidant properties in vitro than staple cereals and fruits by different purported pathways. There are also some anti-nutritional factors that may be reduced by certain processing treatments. Several epidemio...

  9. Demand for cereal grains in Asia: the effect of urbanization

    Huang, Jikun; David, Cristina C

    1993-01-01

    This paper analyzes the effects of urbanization on demand for cereal grains - rice, wheat, and coarse grains - in nine Asian countries. A complete demand system (Almost Ideal Demand System in linear form) is estimated in two stages based on aggregate time series data from 1960 to 1988. In the high-income countries, i.e. Japan and South Korea, urbanization was observed to significantly reduce demand for cereal grains. In the lower-income countries, demand for cereal grains either increased or ...

  10. Cereal Structure and Its Relationship to Nutritional Quality

    Yiu, S. H.

    1989-01-01

    Factors that determine the digestibility of carbohydrates and minerals in cereals are examined . Most carbohydrates and minerals in cereals are structurally bound, either surrounded by or associated with cell wall components not easily digested by non-ruminant animals and humans. Treatments such as mechanical grinding and heat improve the digestibility of nutrient s . Further processing and cooking result in structural and physeochemical changes of cereal starch, phytate, and dietary fiber. S...

  11. Genome-wide expression profiling of the transcriptomes of four Paulownia tomentosa accessions in response to drought.

    Dong, Yanpeng; Fan, Guoqiang; Deng, Minjie; Xu, Enkai; Zhao, Zhenli

    2014-10-01

    Paulownia tomentosa is an important foundation forest tree species in semiarid areas. The lack of genetic information hinders research into the mechanisms involved in its response to abiotic stresses. Here, short-read sequencing technology (Illumina) was used to de novo assemble the transcriptome on P. tomentosa. A total of 99,218 unigenes with a mean length of 949 nucleotides were assembled. 68,295 unigenes were selected and the functions of their products were predicted using Clusters of Orthologous Groups, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes annotations. Afterwards, hundreds of genes involved in drought response were identified. Twelve putative drought response genes were analyzed by quantitative real-time polymerase chain reaction. This study provides a dataset of genes and inherent biochemical pathways, which will help in understanding the mechanisms of the water-deficit response in P. tomentosa. To our knowledge, this is the first study to highlight the genetic makeup of P. tomentosa. PMID:25192670

  12. CAPACIDAD DE HIDRATACIÓN DE LOS CEREALES PARA DESAYUNO KELLOGG'S CAPACITY OF HYDRATATION OF KELOGG'S EXPANDED CEREALS

    Francisco Prieto G; Judith Prieto M; Alma Delia Román; Alberto José Gordillo M; Carlos Gómez A

    2005-01-01

    Los cereales expuestos a la libre adsorción de humedad, alcanzan rápidamente el equilibrio de adsorción. A baja aW (0.10), los tres cereales para desayuno evaluados en este trabajo, ceden humedad al medio; a partir de valores de aW de 0.53 y mayores manifiestan sus capacidades de adsorción de humedad con el tiempo, lo cual está asociado a que en los cereales se encontraron altos contenidos de azúcares. El cereal de arroz, manifestó los menores valores de capacidad de adsorción, en tanto el de...

  13. DOP-PCR-based chromosome painting of rye (Secale cereale) and wheat-rye hybrid 1R and 1RS chromosomes

    The chromosome painting is an efficient tool for chromosome research. In oeder to determine whether the chromosome painting techniques can be used to identify rye genome in wheat genetic background, 1R and 1RS chromosomes were microdissected from rye (Secale cereale L. var. King ll) and wheat-rye a...

  14. Population genomics of Fusarium graminearum head blight pathogens in North America

    In this study we utilized comparative genomics to identify candidate adaptive alleles in the fungus Fusarium graminearum, the primary pathogen of Fusarium head blight (FHB) in cereal crops. Recent epidemics of FHB have been economically devastating to agriculture, as F. graminearum reduces cereal yi...

  15. The relationship between strigolactones and Striga hermonthica infection in cereals

    Jamil, M.

    2012-01-01

    Cereal production in Africa is under increasing constraint due to the obligate, out-crossing, hemiparasitic weed Striga hermonthica (Del.) Benth, a member of the Scrophulariaceae family. Striga parasitizes roots of cereals like sorghum, pearl millet, maize and upland rice. It has infested about 40%

  16. Engineering Value-Added Traits in Cereal Crops

    Cereal crops – chiefly wheat, rice, maize, sorghum, and pearl millet – are the main food source for more than two-thirds of the world population. Conventional breeding is mainly responsible for the genetic improvement of cereal crops and has resulted in cultivars with superior agronomic traits. Ho...

  17. Surface, Interfacial and Tribological Properties of Cereal-based Amphiphiles

    Starch, protein and oil are the major components of most cereals such as corn and soybean. These components, with or without further chemical modification, display a number of important amphiphilic characteristics that are of interest in a number of applications. Cereal-based oils have polar compo...

  18. Concern over ready-to-eat breakfast cereals

    The Research and Professional Brief published in the April 2008 issue of the Journal entitled "Examining the Nutritional Quality of Breakfast Cereals Marketed to Children" (1) is of concern. The authors concluded that the "the majority of children's cereals failed to meet national nutrition standard...

  19. Modeling Coupon Values for Ready-To-Eat Breakfast Cereals

    2001-01-01

    A theoretical framework is developed to highlight the significant determinants of coupon values. A fixed effects panel data model is fitted with data from the breakfast cereal industry. The explanatory variables include own retail price, brand loyalty, brand market share, rival coupon redemptions, and firm and product type indicators. Keywords: coupons, ready-to-eat breakfast cereals, panel data model

  20. DEMAND FOR HIGH FIBER AND LOW FIBER CEREALS

    Binkley, James K.; Eales, James S.

    2000-01-01

    Nutritional considerations are of increasing importance in some foods. To address demand for nutrition, we estimate a demand system for cereals of different nutrient types, concentrating on fiber and focussing on five Kellogg's cereals with marked differences in fiber content. Results shed light on the role of price in who demands "healthy" foods.

  1. Genome Sequencing

    Sato, Shusei; Andersen, Stig Uggerhøj

    2014-01-01

    The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based on transcr......The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based...

  2. Genomics With Cloud Computing

    Sukhamrit Kaur; Sandeep Kaur

    2015-01-01

    Abstract Genomics is study of genome which provides large amount of data for which large storage and computation power is needed. These issues are solved by cloud computing that provides various cloud platforms for genomics. These platforms provides many services to user like easy access to data easy sharing and transfer providing storage in hundreds of terabytes more computational power. Some cloud platforms are Google genomics DNAnexus and Globus genomics. Various features of cloud computin...

  3. 2004 Cereals reveal an intriguing surprise: the performance of cereals on organic farms

    Wolfe, Martin; Hinchsliffe, Kay

    2005-01-01

    The great variability in the performance of cereals on organic farms that we have highlighted from past research trials has been confirmed in a new and more widely based trial. Participation from 20 producers gives the results a robust character and has enabled us to spot something we had not previously noted. EFRC researchers Prof Martin Wolfe AND Kay Hinchsliffe set out the results. Introduction EFRC is currently working on a Defra-funded project designed to use participatory resear...

  4. Optimal root arrangement of cereal crops

    Jung, Yeonsu; Park, Keunhwan; Kim, Ho-Young

    2015-11-01

    The plant root absorbs water from the soil and supplies it to the rest part of the plant. It consists of a number of root fibers, through whose surfaces water uptake occurs. There is an intriguing observation that for most of cereal crops such as maize and wheat, the volume density of root in the soil declines exponentially as a function of depth. To understand this empirical finding, we construct a theoretical model of root water uptake, where mass transfer into root surface is modeled just as heat flux around a fin. Agreement between the theoretically predicted optimal root distribution in vertical direction and biological data supports the hypothesis that the plant root has evolved to achieve the optimal water uptake in competition with neighbors. This study has practical implication in the agricultural industry as well as optimal design of water transport networks in both micro- and macroscales. Department of Mechanical and Aerospace Engineering, Seoul National University, Seoul 08826, Korea.

  5. Mercury levels in cereals and vegetables

    The mercury content of cereals and market vegetables was determined with the flameless Atomic Absorption Spectrophotometry cold vapor method. Except for one sample the values for rye and wheat are below 100 ppb related to plant dry matter. Significant differences in the mercury content during the growth period could not be established. The average Hg-concentration in the kernel was 11 ppb. Vegetables of the Viennese market varied in Hg content between 0.5 and 40.7 ppb (mean values on wet weight basis). Only a few samples of champignons exceeded the permitted 50 ppb Hg tolerance limit, but 89% of the samples showed values of less than or equal to 10 ppb. At per head level of 74 kg vegetables consumed in Austria and an accepted mercury level of 10 ppb the weekly mercury intake is less than 5% of the 300 μg total Hg dosis per week tolerated by the WHO/FAO. (author)

  6. Fusarium Head Blight of Cereals in Denmark

    Nielsen, L. K.; Jensen, J. D.; Nielsen, G. C.;

    2011-01-01

    Quantitative real-time polymerase chain reaction differentiating 10 Fusarium spp. and Microdochium nivale or M. majus was applied to a total of 396 grain samples of wheat, barley, triticale, oat, and rye sampled across Denmark from 2003 to 2007, along with selected samples of wheat and barley from...... 1957 to 2000, to determine incidence and abundance of individual Fusarium spp. The mycotoxins deoxynivalenol (DON), nivalenol, zearalenone, T-2, and HT-2 were quantified using liquid chromatography–double mass spectrometry. Major differences in the Fusarium species complex among the five cereals...... as well as great yearly variation were seen. Fusarium graminearum, F. culmorum, and F. avenaceum were dominant in wheat, with DON as the dominant mycotoxin. F. langsethiae, F. culmorum, and F. avenaceum were dominant in barley and oat, leading to relatively high levels of the mycotoxins T-2 and HT-2. F...

  7. Application of gamma-irradiation to cereals and stockfeeds

    Gamma-radiation may be used on cereals and stockfeeds to control insect infestation and, at higher dose rates, microbiological problems such as mould growth, aflatoxin production, pathogens, rope producing bacteria and total plate count. Major problems arise only at relatively high dose levels and affect functionality of cereals in terms of germination, dough properties, starch behaviour and cake and noodle quality. Chemical and physical changes to starch have the greatest impact on the properties of cereals and their products as a consequence of gamma-radiation

  8. Bioavailability of zinc from different Pakistani cereals grains

    The zinc has been determined by neutron activation analysis while phytate by spectrophotometric method in some Pakistani cereals grains. The zinc:phytate ratio is more than 40:1 in all cereal grains which is for more than the suggested binding ratio of 4:1. Therefore, bio-availability of zinc from Pakistan cereal grains is more than sufficient and no deficiency can be encountered due to bioavailability of zinc. The only deficiency of zinc which could happen, will be due to the pathological conditions. (author)

  9. From protein catalogues towards targeted proteomics approaches in cereal grains

    Finnie, Christine; Sultan, Abida; Grasser, Klaus D.

    2011-01-01

    Due to their importance for human nutrition, the protein content of cereal grains has been a subject of intense study for over a century and cereal grains were not surprisingly one of the earliest subjects for 2D-gel-based proteome analysis. Over the last two decades, countless cereal grain...... extraction, separation and identification of proteins and peptides is facilitating functional proteomics and analysis of sub-proteomes from small amounts of starting material, such as seed tissues. The combination of proteomics with structural and functional analysis is increasingly applied to target subsets...

  10. Functional properties of pasta enriched with variable cereal brans

    Kaur, Gurkirat; Sharma, Savita; Nagi, H. P. S.; Dar, Basharat N.

    2011-01-01

    To explore the potentiality of cereal brans for preparation of fiber enriched pasta, various cereal brans (Wheat, Rice, Barley and Oat) were added at 0, 5, 10, 15, 20 and 25 per cent to durum wheat semolina. The effect of cereal bran enrichment on the colour, cooking, sensory quality and shelf life of enriched pasta was assessed at ambient temperature. Pasta prepared with added fiber at 25 per cent level had the highest protein and dietary fiber content as compared to control. Enrichment with...

  11. Life Cycle Assessment in the Cereal and Derived Products Sector

    Renzulli, Pietro A.; Bacenetti, Jacopo; Benedetto, Graziella;

    2015-01-01

    environmental improvement in such systems. Following a brief introduction to the cereal sector and supply chain, this chapter reviews some of the current cereal-based life cycle thinking literature, with a particular emphasis on LCA. Next, an analysis of the LCA methodological issues emerging from...... the literature review is carried out. The following section of the chapter discusses some practices and approaches that should be considered when performing cereal-based LCAs in order to achieve the best possible results. Conclusions are drawn in the final part of the chapter and some indications are given...

  12. 40 CFR 406.90 - Applicability; description of the ready-to-eat cereal subcategory.

    2010-07-01

    ...-to-eat cereal subcategory. 406.90 Section 406.90 Protection of Environment ENVIRONMENTAL PROTECTION... Cereal Subcategory § 406.90 Applicability; description of the ready-to-eat cereal subcategory. The... produce various breakfast cereals normally available for human consumption without cooking....

  13. Functional genomics strategies with transposons in rice

    Greco, R.

    2003-01-01

    Rice is a major staple food crop and a recognizedmonocotylenedousmodel plant from which gene function discovery is projected to contribute to improvements in a variety of cereals like wheat and maize. The recent release of rough drafts of the rice genome sequence for public

  14. Production of Drought and Salt Tolerant Transgenic Cereal Plants

    A. Garg; R. Wu

    2007-01-01

    @@ Genetic transformation of cereal plants is a powerful method for producing agronomically useful transgenic plants. Salt and drought stress result in substantial yield losses, which amounts to many billions of dollars each year.

  15. A cross-cultural study of cereal food quality perception

    Krutulyte, Rasa; Costa, Ana I. A.; Grunert, Klaus G.

    2009-01-01

    Cereal food production and use show substantial heterogeneity across Europe. For a category central in most EU diets, cereal food quality perception is, nevertheless, surprisingly understudied. With this in mind, 357 Danish, Lithuanian and Portuguese citizens were interviewed about the importance...... cookies, pasta and vodka were more often assessed by the Portuguese as relevant for decision-making at the point-of-purchase. This highlights the need for further cross-cultural research on food quality perception.......Cereal food production and use show substantial heterogeneity across Europe. For a category central in most EU diets, cereal food quality perception is, nevertheless, surprisingly understudied. With this in mind, 357 Danish, Lithuanian and Portuguese citizens were interviewed about the importance...

  16. A cross-cultural study of cereal foods' quality perception

    Krutulyte, Rasa; Grunert, Klaus G.; Costa, Ana I. A.

    Cereal foods' production and use show substantial heterogeneity across Europe. For a category central in most EU diets, cereal foods' quality perception is, nevertheless, surprisingly understudied. With this in mind, 357 Danish, Lithuanian and Portuguese citizens were inquired about the importanc......, pasta and vodka were more often assessed by the Portuguese as relevant for decision-making at the point-of-purchase. This highlights the need for further cross-cultural research on food quality perception.......Cereal foods' production and use show substantial heterogeneity across Europe. For a category central in most EU diets, cereal foods' quality perception is, nevertheless, surprisingly understudied. With this in mind, 357 Danish, Lithuanian and Portuguese citizens were inquired about the importance...

  17. Phytase-mediated mineral solubilization from cereals underin vitrogastric conditions

    Nielsen, Anne V. F.; Meyer, Anne S.

    2016-01-01

    BACKGROUND Enzymatic dephosphorylation of phytic acid (inositol hexakisphosphate) in cereals may improve mineral bioavailability in humans. This study quantified enzymatic dephosphorylation of phytic acid by measuring inositol tri- to hexakisphosphate (InsP3-6) degradation and iron and zinc release...... cereal phytic acid at similar rates and to similar extents. Microbial phytase-catalysed phytate dephosphorylation was accompanied by increased iron and zinc release from the cereal substrates. For wheat bran at pH 5, the endogenous wheat phytase activity produced mineral release equal to or better than...... simulated gastric conditions. The data infer that acid stable microbial phytases can help improve iron bioavailability from phytate-rich cereal substrates via post-ingestion activity....

  18. How to Stabilize the Cereals Market in a Transition Economy

    Ionel, Iuliana

    2005-01-01

    The Romanian cereals market is in a state of transition, because the grain marketing system is characterized by high risk for market participants. The current situation of grain market is used to estimate the necessity solutions to stabilize the market.

  19. Orthology between genomes of Brachypodium, wheat and rice

    Balyan Harindra S

    2009-05-01

    Full Text Available Abstract Background In the past, rice genome served as a good model for studies involving comparative genomics of grass species. More recently, however, Brachypodium distachyon genome has emerged as a better model system for genomes of temperate cereals including wheat. During the present study, Brachypodium EST contigs were utilized to resolve orthologous relationships among the genomes of Brachypodium, wheat and rice. Findings Comparative sequence analysis of 3,818 Brachypodium EST (bEST contigs and 3,792 physically mapped wheat EST (wEST contigs revealed that as many as 449 bEST contigs were orthologous to 1,154 wEST loci that were bin-mapped on all the 21 wheat chromosomes. Similarly 743 bEST contigs were orthologous to specific rice genome sequences distributed on all the 12 rice chromosomes. As many as 183 bEST contigs were orthologous to both wheat and rice genome sequences, which harbored as many as 17 SSRs conserved across the three species. Primers developed for 12 of these 17 conserved SSRs were used for a wet-lab experiment, which resolved relatively high level of conservation among the genomes of Brachypodium, wheat and rice. Conclusion The present study confirmed that Brachypodium is a better model than rice for analysis of the genomes of temperate cereals like wheat and barley. The whole genome sequence of Brachypodium, which should become available in the near future, will further facilitate greatly the studies involving comparative genomics of cereals.

  20. The relationship between strigolactones and Striga hermonthica infection in cereals

    Jamil, M

    2012-01-01

    Cereal production in Africa is under increasing constraint due to the obligate, out-crossing, hemiparasitic weed Striga hermonthica (Del.) Benth, a member of the Scrophulariaceae family. Striga parasitizes roots of cereals like sorghum, pearl millet, maize and upland rice. It has infested about 40% of the African agricultural land, resulting in severe yield losses or even complete crop failure worth US billion per annum. The subsistence farmers or approximately 300 million African people lose...

  1. China's projected cereals deficits in a world context

    Alexandratos, Nikos

    1996-01-01

    Lester Brown's recent writings about trends in China's food consumption, production and rapidly rising import requirements and his predictions that the world is running out of potential to increase production of cereals received wide publicity in the press. They increased awareness of the problem among the public, which was stimulated by recent declines in world cereals production per capita, falling stocks and sharp rises in world market prices. This paper is an attempt on my part to extract...

  2. Procedure to Determine Enzyme Inhibitors Activity in Cereal Seeds

    Fernanda Arnhold Pagnussatt; Silvia Letícia Rivero Meza; Jaqueline Garda-Buffon; Eliana Badiale-Furlong

    2012-01-01

    This work established a procedure for commercial fungal amylase usage as indicator of enzyme inhibitors presence in cereals, intending to screening antifungal resistance properties in cereals. Firstly, the inhibitive effects of oat, wheat and rice protein extracts were assessed against different amylase sources. It was found that the fungal amylase (Fungamyl®) was the most affected by the inhibition property of the extracts. The best conditions for inhibitor-extract-enzyme interaction were es...

  3. Modeling Household Preferences for Cereals and Meats in Mexico

    Mejia, Maria; Peel, Derrell S.

    2012-01-01

    Using 2008 household data and a two-step censored model, this article analyzes separability among preferences of the major food groups in Mexico. The main objective of the present paper was to determine if beans and potatoes are not separable from meats and cereals, respectively. Results indicate that beans belong to the protein source demand system and potatoes are not separable from cereals. Another major finding is that corn income elasticity very close to one might indicate a sensitive si...

  4. Determinants of household choice of breakfast cereals: healthy or unhealthy?

    Golub, Alla A.; Binkley, James K.

    2005-01-01

    We studied consumer demand for more and less healthy breakfast cereals. Using ACNielsen Homescan database and USDA food nutrition data, we developed three cereal nutrition indexes for each household in the data. In addition to the standard demographic characteristics of households and prices, we included variables representing differences between private labels and national brands. We found that the structure of the industry, through its effect on the product mix produced, affects consumer ch...

  5. Distribution patterns of segetal weeds of cereal crops in tajikistan

    Using the literature data and field research conducted in 2009-2013 the distribution patterns, habitat conditions, phytogeographical characterisation and endangerment of weeds occurring in cereal crops in Tajikistan were analysed. We found out that Tajik weed flora of cereal crops counts 686 taxa. The most species rich families include Asteraceae, Poaceae and Fabaceae. The highest number of cereal weeds were noted in large river valleys of Syr-Daria, Amu-Daria and their tributaries in south-western and northern Tajikistan. This subregions have the warmest climate conditions and extensive arable lands. The greatest weed species richness was observed in submontane and montane elevations between approx. 700 and 1,900 m a.s. Cereal weeds occur frequently outside segetal communities in Tajikistan. They were noted usually in screes, wastelands, xerothermophilous grasslands, river gravel beds and in steppes habitats. The assessment of threat status reveals that ca. 33% of total cereal weed flora in Tajikistan are disappearing or occur very rarely. According to the chorological data we find that in the cereals of Tajikistan, 35 endemic and 14 subendemic species occur. The most numerous chorological elements of threatened weed flora of Tajikistan are Irano-Turanian (55%), pluriregional (16%), cosmopolitan (14,5%), Mediterranean (9%) and Eurosiberian (5%) species. Further research is suggested to explore the distribution patterns of all weed species in Tajikistan as it should be useful for economy and effectiveness of crop production as well as conservation of most valuable species. (author)

  6. Intestinal T cell responses to cereal proteins in celiac disease.

    Kilmartin, C; Wieser, H; Abuzakouk, M; Kelly, J; Jackson, J; Feighery, C

    2006-01-01

    Celiac disease is caused by sensitivity to wheat gluten in genetically susceptible individuals. The etiological role of the other wheat-related cereals, barley, rye, and oats, is still debated. In order to investigate this issue further, in this study we examined the immune response of celiac mucosal T cell lines to fractions from all four cereals. Cell stimulation was assessed by measuring proliferation (employing (3)H-thymidine incorporation) or cytokine (IL-2, IFN-gamma) production. All five T cell lines demonstrated immunoreactivity to protein fractions from the four related cereals. In some cell lines, reactivity to wheat, barley, and rye was only evident when these cereal fractions had been pretreated with tissue transglutaminase. This study confirms the similar T cell antigenic reactivity of these four related cereals and has implications for their exclusion in the gluten-free diet. However, despite oats stimulation of T cell lines, this cereal does not activate a mucosal lesion in most celiac patients. PMID:16416236

  7. A potent bidirectional promoter from the monocot cereal Eleusine coracana.

    Sen, Saswati; Dutta, Samir Kr

    2016-09-01

    Ragi bifunctional α-amylase-trypsin inhibitor (RBI) of Eleusine coracana (L.) Gaertn. (finger millet) simultaneously inhibits α-amylase and trypsin. In continuation of previous work on the cloning, expression and characterization of RBI, a bidirectional promoter from finger millet was explored on the basis of experimental observations. Two trypsin inhibitors were identified while purifying RBI from a trypsin-Sepharose column eluent. Using an FPLC gel filtration column, these three inhibitors were purified to homogeneity and subjected to MALDI-TOF-TOF-MS/MS analysis and N-terminal sequencing. Both ragi trypsin inhibitors (RTIs) showed the same N-terminal sequence and considerable sequence similarity to RBI, indicating the presence of a multigene protease inhibitor family in finger millet. To gain insight into the evolution of these genes, the upstream region of RBI was explored by Genome Walking. Interestingly, on sequencing, a genome walking product of ∼1 Kb showed presence of an N-terminal RBI specific primer sequence twice but in opposite directions and leaving an intervening region of ∼0.9 Kb. The intervening region was presumed to represent an E. coracana bidirectional promoter (EcBDP), intuitively having a divergent RBI-RTI gene pair at two sides. For assaying the bidirectionality of promoter activity, a dual reporter GUS-GFP vector construct was made for plant expression containing the reporter genes at two ends of EcBDP, which was used to transform Agrobacterium tumefaciens LBA 4404. Transient plant transformation by recombinant Agrobacterium cells was carried out in onion scale epidermal cells and finger millet seedling leaves. Simultaneous expression of GUS and GFP under EcBDP established it as a potent natural bidirectional promoter from monocot origin, thereby potentially having vast application in cereal gene manipulations. In addition, inducibility of the EcBDP by either abscisic acid or cold treatment, as determined by transient

  8. Determination of pesticide residues in cereal grains

    The applicability of the TLC for determination of pesticide residues in cereal grains was studied using corn, rice and wheat as representative commodities and atrazine, captan, chlorpyrifos, chlortoluron, diazinon, diuron, fenitrothion, metoxuron, prochloraz, triforine as representative compounds. Following the extraction with ethyl acetate the efficiency of extraction was tested with Bio-Rad SX-3 gel, GPC, silica gel, florisil and RP-18 reverse phase silica cartridge. The GPC alone or in combination with silica or florisil cleanup were the most suitable for cleanup of the extracts. The TLC elution characteristics of 131 pesticide active ingredients were tested with eight elution systems. The detectability of the selected compounds was determined with six detection methods including two chemical and four bioassay procedures. In addition to the basic methods, the non-toxic Penicillium cyclopium fungi spore inhibition was introduced and it was found very sensitive for some fungicide compounds. The minimum detectable quantities of the tested compounds ranged from 1 ng to 100 ng. The average recoveries from rice and wheat ranged from 78% to 89%, and the limits of quantitation, LOQ, were between 0.01 and 0.2 mg/kg for the selected ten compounds. (author)

  9. Alternative cereal grains and cereal by-products as sources of energy in poultry diets- A review

    C. I. Medugu,; A. O. Raji,; J. U. Igwebuike; E. Barwa

    2011-01-01

    The increase in the world population, high cost of conventional animal feed ingredients and low protein intake in most developing countries has necessitated animal scientists to search for alternative sources of feed ingredients. This can enhance the production of animals with short generation intervals such as poultry to overcome the protein deficiency. This paper reviews cereal grains and cereal by-products as alternative feed ingredients for formulating poultry diets. Results obtained from...

  10. Development of cereal-based functional food using cereal-mix substrate fermented with probiotic strain - Pichia kudriavzevii OG32.

    Ogunremi, Omotade R; Agrawal, Renu; Sanni, Abiodun I

    2015-11-01

    Probiotic strains contribute to the functionality of foods during fermentation. In this present work, cereal-mix was fermented with probiotic Pichia kudriavzevii OG32. Selected fermentation parameters and functional properties of the product were determined. The growth of Pichia kudriavzevii OG32 was supported by the cereal-mix containing 1% salt and 0.2% red chili powder to counts of between 7.46 and 8.22 Log10 cfu/mL within 24 h. Pichia kudriavzevii OG32 increased the viscosity of cereal-mix with the highest inoculum size (1.84x105cfu/ml) giving the highest viscosity of 1793.6 mPa.S. An inoculum size of 1.98 × 10(4) cfu/mL gave the most acceptable product based on the sensory evaluation by the panelist. Forty volatile compounds were identified in the fermented product, while acids (32.21%) and esters (32.37%) accounted for the largest proportions. The cereal-based fermented product scavenged DPPH from 200 μmol/L methanolic solution by 55.71%. Probiotic yeast improved the sensory and some functional properties of cereal-based substrate during fermentation. This is one of the first reports on the volatile composition of cereal-based functional food produced with probiotic yeast. PMID:26788290

  11. Two ancient rounds of polyploidy in rice genome

    ZHANG Yang; XU Guo-hua; GUO Xing-yi; FAN Long-jiang

    2005-01-01

    An ancient genome duplication (PPP 1) that predates divergence ofthe cereals has recently been recognihere another potentially older large-scale duplication (PPP2) event that predates monocot-dicot divergence in the genome of rice (Oryza sativa L.), as inferred from the age distribution of pairs of duplicate genes based on recent genome data for rice. Our results suggest that paleopolyploidy was widespread and played an important role in the evolution of rice.

  12. Presweetened dry breakfast cereals: potential for dental danger.

    Shannon, I L; McCartney, J C

    1981-01-01

    Sugar concentrations were measured by enzymatic methods in twenty-eight presweetened breakfast cereals. Means for the various sugars were in essential agreement with recently published gas-liquid chromatography results and also with the sugar values expressed on the labels of these cereals. Thus, accurate and reproducible analytical methods are available for sugar measurements in foods; sugar levels in foods can now be assessed with confidence and the information disseminated to interested food purchasers. Oral retention time, as measured by salivary sucrose determinations, was prolonged after ingestion of these cereals directly from the box; oral clearance was more rapid, when the same subject drank a sugar solution of the same concentration. Presweetened cereals are candidates for frequent ingestion as snacks, due to their candy-like taste. This fact plus the high sugar levels in these cereals and the tendency to prolonged intraoral retention, automatically classifies these materials as potential dental hazards, when used as snacks. It is not implied that this is the case, when these products are eaten at mealtime with milk. PMID:6944319

  13. Storage stability and quality assessment of processed cereal brans.

    Sharma, Savita; Kaur, Satinder; Dar, B N; Singh, Baljit

    2014-03-01

    Quality improvement of cereal brans, a health promoting ingredient for functional foods is the emerging research concept due to their low shelf stability and presence of non-nutrient components. A study was conducted to evaluate the storage quality of processed milling industry byproducts so that these can be potentially utilized as a dietary fibre source. Different cereal brans (wheat, rice, barley and oat) were processed by dry, wet, microwave heating, extrusion cooking and chemical methods at variable conditions. Processed brans were stored in high density polyethylene (HDPE) pouches at ambient and refrigeration temperature. Quality assessments (moisture, free fatty acids, water activity and physical quality) of brans were done up to six months, at one month intervals. Free fatty acid content, moisture and water activity of the cereal brans remained stable during the entire storage period. Among treatments, extrusion processing is the most effective for stability. Processing treatments and storage temperature have the positive effect on extending the shelf life of all cereal brans. Therefore, processed cereal brans can be used as a dietary fortificant for the development of value added food products. PMID:24587536

  14. Contribution of Cereal-Legume association to the yield and grain quality of cereals

    A study on the mixed cereal-legume cultivation in different planting patterns was undertaken for two consecutive years. The aim was to investigate the contribution of the association of legumes towards yield and grain quality of cereal crops. The data indicated that the association of legumes in different planting pattern with sorghum affected the yield and grain quality of sorghum. During both the years of study, the double row strips (30/90 cm) planting pattern significantly increased the grain yield of sorghum, as compered with single rows (60 cm apart) and triple row strips (30/120 cm). The grain yield of sorghum decreased when sorghum was associated with mungbean or guar, but the additional harvest of intercrops increased the total productivity. The difference in grain yield between the treatment means of interaction was non-significant. Moreover, in the first year of study, protein content of sorghum grain was not significantly affected by the planting pattern, but in the second year of study, double and triple row strips planting pattern significantly increased the grain protein content (respectively, 9.41% and 9.345%) of sorghum, as compared with single row planting pattern (protein content of 9.19%). Sorghum grain protein content of 9.51 and 9.49% produced in association with mungbean was significantly more than the grain protein content of sorghum alone or sorghum grown in the association with guar during 1999 and 2000, respectively. Increase in grain protein content of sorghum, when associated with mungbean, was attributed to the N transfer from companion mungbean to sorghum. It may be concluded from the results obtained that sorghum + mungbean association in the double row strips (30/90 cm) planting pattern can efficiently utilize the available resources to improve the grain quality and overall production of sorghum-based cropping system. (author)

  15. Evaluation of the protein quality of cereal mutants

    Protein content, true protein digestibility, biological value, net protein utilization, and utilizable protein in several varieties of barley, wheat and rice were determined in nitrogen-balance trials with rats. It appeared that protein quality varied significantly between these three cereal grains, with the lowest values for wheat. However, the protein content was markedly higher in wheat; consequently, utilizable protein was highest in this cereal grain. The different varieties within barley, wheat and rice varied considerably in protein quality. This demonstrates a large variation in the potential for protein synthesis. The main problem with rice and barley is the low protein concentration, whereas with wheat the biggest problem seems to be the quality of the protein. As the lysine level in all cereal grains, expressed in percentage of the protein, cannot meet the requirements for either man or domestic animals efforts should be made to increase the lysine concentration in these food sources. (author)

  16. Temporal Variation of Mycotoxin Producing Fungi in Norwegian Cereals

    Leif Sundheim

    2013-12-01

    Full Text Available Spring barley is grown on about half of the Norwegian cereal area. The rest of the area is equally divided between wheat and oats. Most years the domestic production provides 70%–80% of the domestic market for bread wheat. Barley and oats are mainly grown for animal feed. During the years 2008–2012, severe epidemics of Fusarium head blight have led to increased mycotoxin contamination of cereals. During that period, precipitation was above normal during anthesis and grain maturation. The most important mycotoxin producers have been F. avenaceum, F. culmorum, F. graminearum and F. langsethiae. Increased deoxynivalenol contamination of Norwegian cereals during recent years is due to severe F. graminearum epidemics.

  17. Polycyclic aromatic hydrocarbons in cereal products on the Turkish market.

    Kacmaz, Sibel

    2016-09-01

    The contamination level of four EU marker polycyclic aromatic hydrocarbons (PAHs) in some cereal-derived products was surveyed in this study. Thirty-eight samples, 20 bread and 18 breakfast cereals, were purchased from retail shops and local markets of East Black sea region in Turkey. The samples were analysed for four EU marker PAHs, using ultrasonic extraction, solid-phase extraction (SPE) clean up and stable-isotope dilution gas chromatography with mass-spectrometric (GC/MS) detection. The method was validated with the parameters linearity, accuracy, precision, limit of detection (LOD), limit of quantitation (LOQ) and uncertainty. Total content of the four PAHs in bread varied from 0.19 to 0.46 µg kg(-1) and in breakfast cereals from 0.10 to 0.87 µg kg(-1). PMID:26986946

  18. Study on powdery mildew resistance transfer from S. cereale L.cv. Weiling rye into wheat.

    Zhang, Huai Yu; Ren, Zheng Long

    2007-02-01

    Weiling rye (S. cereale L.cv.), a Chinese dwarf rye, confers high powdery mildew (Erysiphe gramininis f.sp.tritici) in China. My8443, a wheat cultivars infecting seriously powdery mildew disease, was used as the female parent and Weiling rye was used as the donor of powdery mildew resistance in the study. A new wheat-rye translocation line,named No.147,was developed from BC2F6 progenies of wheat cultivars My8443 and Weiling rye to transfer the resistance from Weiling rye to common wheat. The powdery mildew resistance of No.147 and its parents were investigated in seedling and adult stages by artificially inoculating the mixture of advanced pathogenic races in room and field and the single pathogenic race in room. Improved Giemsa C-banding technique and genomic in situ hybridization (GISH,Genomic in situ hybridization) were used to identify wheat and rye chromosomes. Acid polyacylamide gel electrophoresis(APAGE) separation of endosperm gliadin and simple sequence repeat(SSR) PCR amplification of 11 SCM-Secale cereale markers also were employed for 1RS confirmation in the study. The results showed that No.147 was a new 1BL/1RS wheat-rye chromosome translocation with high powdery mildew resistance derived from Weiling rye. The reason on the formation of the new wheat-rye chromosome translocation was analyzed. The utilizations of resistance gene resource derived from Chinese Weiling rye and the new 1BL/1RS translocation line in wheat genetics and breeding improvement were discussed in the paper. PMID:17357447

  19. Effects of processing on mycotoxin stability in cereals.

    Milani, Jafar; Maleki, Gisoo

    2014-09-01

    The mycotoxins that generally occur in cereals and other products are not completely destroyed during food-processing operations and can contaminate finished processed foods. The mycotoxins most usually associated with cereal grains are aflatoxins, ochratoxins, deoxynivalenol, zearalenone and fumonisins. The various food processes that may have effects on mycotoxins include cleaning, milling, brewing, cooking, baking, frying, roasting, flaking, alkaline cooking, nixtamalization, and extrusion. Most of the food processes have variable effects on mycotoxins, with those that utilize high temperatures having the greatest effects. In general, the processes reduce mycotoxin concentrations significantly, but do not eliminate them completely. This review focuses on the effects of various thermal treatments on mycotoxins. PMID:24497303

  20. INVITRO DIGESTIBILITY OF PROTEIN FROM BARLEY AND OTHER CEREALS

    Buchmann, N. B.

    1979-01-01

    An in vitro method for measuring barley protein digestibility is presented. Samples were first incubated with pepsin in HCl; pancreatin was then added concomitantly with a bacteriostatic borate buffer. After TCA-precipitation, soluble nitrogen was measured. The digestion was unaffected by......, the field-grown barleys per se differed too little for the accuracy to be confirmed. The other cereals tested, oats, rye, maize, wheat, and rice, gave unsatisfactory results with pepsin/pancreatin, and also with pepsin, pancreatin, or pronase used separately. The ranking of the cereals according to in...

  1. Harnessing the sorghum genome sequence:development of a genome-wide microsattelite (SSR) resource for swift genetic mapping and map based cloning in sorghum

    Sorghum is the second cereal crop to have a full genome completely sequenced (Nature (2009), 457:551). This achievement is widely recognized as a scientific milestone for grass genetics and genomics in general. However, the true worth of genetic information lies in translating the sequence informa...

  2. A genome blogger manifesto

    Corpas Manuel

    2012-10-01

    Full Text Available Abstract Cheap prices for genomic testing have revolutionized consumers’ access to personal genomics. Exploration of personal genomes poses significant challenges for customers wishing to learn beyond provider customer reports. A vibrant community has spontaneously appeared blogging experiences and data as a way to learn about their personal genomes. No set of values has publicly been described to date encapsulating ideals and code of conduct for this community. Here I present a first attempt to address this vacuum based on my own personal experiences as genome blogger.

  3. The Salmonella In Silico Typing Resource (SISTR: An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

    Catherine E Yoshida

    Full Text Available For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution and outbreak analysis. We present the Salmonella In Silico Typing Resource (SISTR, a bioinformatics platform for rapidly performing simultaneous in silico analyses for several leading subtyping methods on draft Salmonella genome assemblies. In addition to performing serovar prediction by genoserotyping, this resource integrates sequence-based typing analyses for: Multi-Locus Sequence Typing (MLST, ribosomal MLST (rMLST, and core genome MLST (cgMLST. We show how phylogenetic context from cgMLST analysis can supplement the genoserotyping analysis and increase the accuracy of in silico serovar prediction to over 94.6% on a dataset comprised of 4,188 finished genomes and WGS draft assemblies. In addition to allowing analysis of user-uploaded whole-genome assemblies, the SISTR platform incorporates a database comprising over 4,000 publicly available genomes, allowing users to place their isolates in a broader phylogenetic and epidemiological context. The resource incorporates several metadata driven visualizations to examine the phylogenetic, geospatial and temporal distribution of genome-sequenced isolates. As sequencing of Salmonella isolates at public health laboratories around the world becomes increasingly common, rapid in silico analysis of minimally processed draft genome assemblies provides a powerful approach for molecular epidemiology in support of public health investigations. Moreover, this type of integrated analysis using multiple sequence

  4. The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

    Yoshida, Catherine E; Kruczkiewicz, Peter; Laing, Chad R; Lingohr, Erika J; Gannon, Victor P J; Nash, John H E; Taboada, Eduardo N

    2016-01-01

    For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS) promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution and outbreak analysis. We present the Salmonella In Silico Typing Resource (SISTR), a bioinformatics platform for rapidly performing simultaneous in silico analyses for several leading subtyping methods on draft Salmonella genome assemblies. In addition to performing serovar prediction by genoserotyping, this resource integrates sequence-based typing analyses for: Multi-Locus Sequence Typing (MLST), ribosomal MLST (rMLST), and core genome MLST (cgMLST). We show how phylogenetic context from cgMLST analysis can supplement the genoserotyping analysis and increase the accuracy of in silico serovar prediction to over 94.6% on a dataset comprised of 4,188 finished genomes and WGS draft assemblies. In addition to allowing analysis of user-uploaded whole-genome assemblies, the SISTR platform incorporates a database comprising over 4,000 publicly available genomes, allowing users to place their isolates in a broader phylogenetic and epidemiological context. The resource incorporates several metadata driven visualizations to examine the phylogenetic, geospatial and temporal distribution of genome-sequenced isolates. As sequencing of Salmonella isolates at public health laboratories around the world becomes increasingly common, rapid in silico analysis of minimally processed draft genome assemblies provides a powerful approach for molecular epidemiology in support of public health investigations. Moreover, this type of integrated analysis using multiple sequence-based methods of sub

  5. Nutritional quality, labelling and promotion of breakfast cereals on the New Zealand market.

    Devi, Anandita; Eyles, Helen; Rayner, Mike; Ni Mhurchu, Cliona; Swinburn, Boyd; Lonsdale-Cooper, Emily; Vandevijvere, Stefanie

    2014-10-01

    Breakfast cereals substantially contribute to daily energy and nutrient intakes among children. In New Zealand, new regulations are being implemented to restrict nutrition and health claims to products that meet certain 'healthy' criteria. This study investigated the difference in nutritional quality, labelling and promotion between 'healthy' and 'less healthy' breakfast cereals, and between breakfast cereals intended for children compared with other breakfast cereals on the New Zealand market. The cross-sectional data collection involved taking pictures of the nutrition information panel (NIP) and front-of pack (FoP) for all breakfast cereals (n = 247) at two major supermarkets in Auckland in 2013. A nutrient profiling tool was used to classify products into 'healthy'/'less healthy'. In total 26% of cereals did not meet the 'healthy' criteria. 'Less healthy' cereals were significantly higher in energy density, sugar and sodium content and lower in protein and fibre content compared with 'healthy' cereals. Significantly more nutrition claims (75%) and health claims (89%) featured on 'healthy' compared with 'less healthy' cereals. On the 'less healthy' cereals, nutrition claims (65%) were more predominant than health claims (17%). Of the 52 products displaying promotional characters, 48% were for 'cereals for kids', and of those, 72% featured on 'less healthy' cereals. In conclusion, most breakfast cereals met the 'healthy' criteria; however, 'cereals for kids' were 'less healthy' and displayed more promotional characters than other cereal categories. Policy recommendations include: food composition targets set or endorsed by government, strengthening and enforcing current regulations on health and nutrition claims, considering the application of nutrient profiling for nutrition claims in addition to health claims, introducing an interpretative FoP labelling system and restricting the use of promotional characters on 'less healthy' breakfast cereals. PMID

  6. Projecting Meat and Cereals Demand for China Based on a Meta-Analysis of Income Elasticities

    Zhou; Yu, Xiaohua; Abler, David; Chen, Danhong

    2014-01-01

    There are many projections for China's food demand, and the projection results differ significantly from each other. Different values for income elasticities could be a major reason. This study projects meat and cereals demand for China based on a meta-analysis of the income elasticity estimates using a collection of 143 and 240 income elasticity estimates for cereals and meat products, respectively, from 36 primary studies. We find that income elasticities for most cereals (general cereals, ...

  7. Major Cereal Grain Fibers and Psyllium in Relation to Cardiovascular Health

    Roizen, Michael F; Mladen Golubic; Kristin Kirkpatrick; Bernstein, Adam M.; Brigid Titgemeier

    2013-01-01

    Numerous studies reveal the cardiovascular benefits of consuming dietary fiber and, especially, cereal fiber. Cereal fiber is associated with cardiovascular risk reduction through multiple mechanisms and consuming a variety of cereal fiber sources offers health benefits specific to the source. Certain cereal fibers have been studied more extensively than others and provide greater support for their incorporation into a healthful diet. β-glucan from oats or barley, or a combination of whole oa...

  8. Drought impacts on cereal yields in Iberia

    Gouveia, Célia; Liberato, Margarida L. R.; Russo, Ana; Montero, Irene

    2014-05-01

    In the present context of climate change, land degradation and desertification it becomes crucial to assess the impact of droughts to determine the environmental consequences of a potential change of climate. Large drought episodes in Iberian Peninsula have widespread ecological and environmental impacts, namely in vegetation dynamics, resulting in significant crop yield losses. During the hydrological years of 2004/2005 and 2011/2012 Iberia was affected by two extreme drought episodes (Garcia-Herrera et al., 2007; Trigo et al., 2013). This work aims to analyze the spatial and temporal behavior of climatic droughts at different time scales using spatially distributed time series of drought indicators, such as the Standardized Precipitation Evapotranspiration Index (SPEI) (Vicente-Serrano et al., 2010). This climatic drought index is based on the simultaneous use of precipitation and temperature. We have used CRU TS3 dataset to compute SPEI and the Standardized Precipitation Index (SPI). Results will be analyzed in terms of the mechanisms that are responsible by these drought events and will also be used to assess the impact of droughts in crops. Accordingly an analysis is performed to evaluate the large-scale conditions required for a particular extreme anomaly of long-range transport of water vapor from the subtropics. We have used the European Centre for Medium-Range Weather Forecasts (ECMWF) ERA Interim reanalyses, namely, the geopotential height fields, temperature, wind, divergence data and the specific humidity at all pressure levels and mean sea level pressure (MSLP) and total column water vapor (TCWV) for the Euro-Atlantic sector (100°W to 50°E, 0°N-70°N) at full temporal (six hourly) and spatial (T255; interpolated to 0.75° regular horizontal grid) resolutions available to analyse the large-scale conditions associated with the drought onset. Our analysis revealed severe impacts on cereals crop productions and yield (namely wheat) for Portugal and

  9. In vitro estimation of the rate and extent of ruminal digestion of cereal feed fraction

    Tahir, M.N.; Lund, Peter; Hetta, M.;

    2011-01-01

    Cereal grains are important components in diets for high producing dairy cows and fast growing beef cattle. The most important feed fraction in cereals is starch, which constitutes the major portion (70-80%) of cereal grains. In ruminant nutrition different starch sources are characterized by their...

  10. 40 CFR 406.80 - Applicability; description of the hot cereal subcategory.

    2010-07-01

    ... cereal subcategory. 406.80 Section 406.80 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS GRAIN MILLS POINT SOURCE CATEGORY Hot Cereal Subcategory § 406.80 Applicability; description of the hot cereal subcategory. The provisions of this subpart...

  11. Involvement of Disperse Repetitive Sequences in Wheat/Rye Genome Adjustment

    Manuela Silva; Miguel Bento; Diana Tomás; Wanda Viegas

    2012-01-01

    The union of different genomes in the same nucleus frequently results in hybrid genotypes with improved genome plasticity related to both genome remodeling events and changes in gene expression. Most modern cereal crops are polyploid species. Triticale, synthesized by the cross between wheat and rye, constitutes an excellent model to study polyploidization functional implications. We intend to attain a deeper knowledge of dispersed repetitive sequence involvement in parental genome reshuffle ...

  12. Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L. grown at four international field sites.

    Gareth J Norton

    Full Text Available The mineral concentrations in cereals are important for human health, especially for individuals who consume a cereal subsistence diet. A number of elements, such as zinc, are required within the diet, while some elements are toxic to humans, for example arsenic. In this study we carry out genome-wide association (GWA mapping of grain concentrations of arsenic, copper, molybdenum and zinc in brown rice using an established rice diversity panel of ∼ 300 accessions and 36.9 k single nucleotide polymorphisms (SNPs. The study was performed across five environments: one field site in Bangladesh, one in China and two in the US, with one of the US sites repeated over two years. GWA mapping on the whole dataset and on separate subpopulations of rice revealed a large number of loci significantly associated with variation in grain arsenic, copper, molybdenum and zinc. Seventeen of these loci were detected in data obtained from grain cultivated in more than one field location, and six co-localise with previously identified quantitative trait loci. Additionally, a number of candidate genes for the uptake or transport of these elements were located near significantly associated SNPs (within 200 kb, the estimated global linkage disequilibrium previously employed in this rice panel. This analysis highlights a number of genomic regions and candidate genes for further analysis as well as the challenges faced when mapping environmentally-variable traits in a highly genetically structured diversity panel.

  13. Algorithms for in-season nutrient management in cereals

    The demand for improved decision making products for cereal production systems has placed added emphasis on using plant sensors in-season, and that incorporate real-time, site specific, growing environments. The objective of this work was to describe validated in-season sensor based algorithms prese...

  14. Prevention of ochratoxin A in cereals in Europe

    Olsen, Monica; Jonsson, Nils; Magan, Naresh; Banks, John; Fanelli, Corrado; Rizzo, Aldo; Haikara, Auli; Dobson, Alan; Frisvad, Jens Christian; Holmes, Stephen; Olkku, Juhani; Persson, Sven-Johan; Borjesson, Thomas

    This paper describes objectives and activities of a major European Community project (OTA PREV) aimed at understanding sources of contamination of ochratoxin A in European cereals and related food-stuffs, and the development of strategies to minimise ochratoxin A in the food supply. The project ran...

  15. Manuring and stable nitrogen isotope ratios in cereals and pulses

    Fraser, Rebecca A; Bogaard, Amy; Heaton, Tim;

    2011-01-01

    This paper explores the impact of animal manure application on the δ15N values of a broad range of crops (cereals and pulses), under a range of manuring levels/regimes and at a series of locations extending from northwest Europe to the eastern Mediterranean. We included both agricultural field ex...

  16. Resistant starch and dietary fibers from cereal by-products

    Dried distillers grains (DDG) are a cereal byproduct from ethanol distillation process. On a dry weight basis, DDG is composed of 13% fat, 30% protein, 33% fiber, with the remainder various carbohydrates. Only 6-8% of starch in DDG is in resistant form (dietary fiber). Because only about 6% of DD...

  17. EXPLOITATION OF MECHANISMS REGULATING CYTOKININ LEVELS TO IMPROVE CEREALS

    Kamínek, Miroslav; Šolcová, Blanka; Trčková, M.; Motyka, Václav; Daskalova, S.; Elliott, M. C.

    Kluwer Academic Publishers, 2003, s. 109-128 [NATO-Russia Workshop. Moscow (RU), 12.03.2002-16.03.2002] R&D Projects: GA ČR GA522/02/0530; GA ČR GA206/02/0967 Institutional research plan: CEZ:AV0Z5038910 Keywords : Cytokinin * Plant growth * Cereals Subject RIV: EF - Botanics

  18. Zinc biofortification of cereals: rice differs from wheat and barley

    Stomph, T.J.; Jiang, W.; Struik, P.C.

    2009-01-01

    In their review, mainly focused on bread wheat (Triticum aestivum), durum wheat (Triticum durum) and barley (Hordeum vulgare), Palmgren et al. 1 M.G. Palmgren et al., Zinc biofortification of cereals: problems and solutions, Trends Plant Sci. 13 (2008), pp. 464–473. Article | PDF (905 K) | View Reco

  19. Cecil Cereal's Supermarket Search. Teacher's Guide [and] Student Materials.

    Estes, Cynthia

    The document presents objectives, teaching methods, activities, and work sheets for a unit on choosing breakfast cereal. The unit is intended to be used as an integral part of the fifth grade health program. Activities take place in a classroom learning center and can be completed in approximately four to six hours of classroom time. Objectives…

  20. Modeling Coupon Values for Ready-To-Eat Breakfast Cereals

    Price, Gregory K.; Connor, John M.; Fulton, Joan R.

    2001-01-01

    A theoretical framework is developed to highlight the significant determinants of coupon values. A fixed effects panel data model is fitted with data from the breakfast cereal industry. The explanatory variables include own retail price, brand loyalty, brand market share, rival coupon redemptions, and firm and product type indicators.

  1. Variety Recommended Lists of Organic Cereals in Emilia-Romagna

    C. Piazza; Foutry, H.; Reggiani, R.; Poli, M.; Bolognesi, S

    2008-01-01

    In order to meet the needs of Emilia-Romagna’s technicians and farmers, specific trials on cereals (soft wheat, hard wheat, barley, corn) for organic production have been carried out since 1995. These trials helped draw up specific Variety Recommended Lists.

  2. Clinical Genomic Database

    Solomon, Benjamin D.; Nguyen, Anh-Dao; Bear, Kelly A.; Wolfsberg, Tyra G.

    2013-01-01

    Technological advances have greatly increased the availability of human genomic sequencing. However, the capacity to analyze genomic data in a clinically meaningful way lags behind the ability to generate such data. To help address this obstacle, we reviewed all conditions with genetic causes and constructed the Clinical Genomic Database (CGD) (http://research.nhgri.nih.gov/CGD/), a searchable, freely Web-accessible database of conditions based on the clinical utility of genetic diagnosis and...

  3. Current issues in cereal crop biodiversity.

    Moreta, Danilo E; Mathur, Prem Narain; van Zonneveld, Maarten; Amaya, Karen; Arango, Jacobo; Selvaraj, Michael Gomez; Dedicova, Beata

    2015-01-01

    The exploration, conservation, and use of agricultural biodiversity are essential components of efficient transdisciplinary research for a sustainable agriculture and food sector. Most recent advances on plant biotechnology and crop genomics must be complemented with a holistic management of plant genetic resources. Plant breeding programs aimed at improving agricultural productivity and food security can benefit from the systematic exploitation and conservation of genetic diversity to meet the demands of a growing population facing climate change. The genetic diversity of staple small grains, including rice, maize, wheat, millets, and more recently quinoa, have been surveyed to encourage utilization and prioritization of areas for germplasm conservation. Geographic information system technologies and spatial analysis are now being used as powerful tools to elucidate genetic and ecological patterns in the distribution of cultivated and wild species to establish coherent programs for the management of plant genetic resources for food and agriculture. PMID:24352706

  4. BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics

    Zhao, Wenming; Wang, Jing; He, Ximiao;

    2004-01-01

    the application of the rice genomic information and to provide a foundation for functional and evolutionary studies of other important cereal crops, we implemented our Rice Information System (BGI-RIS), the most up-to-date integrated information resource as well as a workbench for comparative genomic...

  5. Novel Approach for the Analysis and the Optimization of the Cereal Stock Mobility

    LAKHOUA Mohamed Najeh

    2013-10-01

    Full Text Available After a presentation of the process of thecereals mixture, we present a methodology for theoptimization problem and we validate it through apractical case of the cereals stock mobility process. Infact, the cereal transaction in Tunisia is conditioned bythe quality of the cereals determining the price of thetransaction (purchase or sale. With regards to theimportance of the cereal stock mobility, we werecommitted to study the way to optimize the process ofthe cereals mixture and to reduce disparity in deliveredcereal quality through the use of blinding techniquesand optimization methods.

  6. Alternative cereal grains and cereal by-products as sources of energy in poultry diets- A review

    C. I. Medugu,

    2011-08-01

    Full Text Available The increase in the world population, high cost of conventional animal feed ingredients and low protein intake in most developing countries has necessitated animal scientists to search for alternative sources of feed ingredients. This can enhance the production of animals with short generation intervals such as poultry to overcome the protein deficiency. This paper reviews cereal grains and cereal by-products as alternative feed ingredients for formulating poultry diets. Results obtained from various sources indicate that diets formulated with alternative cereal grains and cereal by-products had no adverse effects on body weight gain, feed intake, feed conversion ratio and carcass quality of broiler chickens, cockerels and egg quality of laying hens. Inclusion of different levels of brewers’ dried grain, maize offal, rice bran and broken rice are quite acceptable in poultry diets. Therefore, sorghum, millet, maize offal, rice bran and wheat offal, millet bran, spent sorghum grain and broken rice could be recommended as alternative sources of feed ingredients in poultry diets.

  7. Antioxidant properties of diverse cereal grains: A review on in vitro and in vivo studies.

    Masisi, Kabo; Beta, Trust; Moghadasian, Mohammed H

    2016-04-01

    Cereal grains and products have gained popularity in contributing to healthy eating behavior because of their antioxidant properties associated with protection against chronic diseases. In this review, notable studies on the in vitro and in vivo antioxidant activity of commonly consumed cereal grains are summarized. Cereals contain phytochemicals or certain minor components with antioxidant properties. The antioxidant potential of cereals depends on their bioaccessibility, absorption in the gastrointestinal and their bioavailability utilization in vivo. The in vitro gastrointestinal digestion and fermentation of cereals increased their antioxidant potentials which are significantly correlated with their total phenolic contents. Most studies performed in vivo have been concerned with the antioxidant properties of colored rice, wheat bran and rye products. There are inadequate in vitro and in vivo studies on antioxidative potentials of fermented versus unfermented cereals. Therefore, further studies are necessary to maximize possible health benefits of cereal antioxidative phytochemicals. PMID:26593469

  8. Genetics and Genomics of Wheat Domestication-Driven Evolution

    The cereal crops wheat, rice, maize and sorghum show conservation of large syntenic blocks in spite of more than 40-fold variation in genome and 20-fold variation in chromosome size. It has been proposed that independent mutations at orthologous loci in traits such as shattering, tough fruiting case...

  9. Proteomic profiling of 16 cereal grains and the application of targeted proteomics to detect wheat contamination.

    Colgrave, Michelle L; Goswami, Hareshwar; Byrne, Keren; Blundell, Malcolm; Howitt, Crispin A; Tanner, Gregory J

    2015-06-01

    Global proteomic analysis utilizing SDS-PAGE, Western blotting and LC-MS/MS of total protein and gluten-enriched extracts derived from 16 economically important cereals was undertaken, providing a foundation for the development of MS-based quantitative methodologies that would enable the detection of wheat contamination in foods. The number of proteins identified in each grain correlated with the number of entries in publicly available databases, highlighting the importance of continued advances in genome sequencing to facilitate accurate protein identification. Subsequently, candidate wheat-specific peptide markers were evaluated by multiple-reaction monitoring MS. The selected markers were unique to wheat, yet present in a wide range of wheat varieties that represent up to 80% of the bread wheat genome. The final analytical method was rapid (15 min) and robust (CV 0.98) spanning over 3 orders of magnitude, and was highly selective and sensitive with detection down to 15 mg/kg in intentionally contaminated soy flour. Furthermore, application of this technology revealed wheat contamination in commercially sourced flours, including rye, millet, oats, sorghum, buckwheat and three varieties of soy. PMID:25873154

  10. Proteinaceous inhibitors of carbohydrate-active enzymes in cereals: implication in agriculture, cereal processing and nutrition

    Juge, N.; Svensson, Birte

    2006-01-01

    Enzymes that degrade, modify, or create glycosidic bonds are involved in carbohydrate biosynthesis and remodelling. Microbial carbohydrate-active enzymes form the basis of current green technology in the food, feed, starch, paper and pulp industries and the revolution in genomics may offer long...

  11. Functional genomics strategies with transposons in rice

    Greco, R

    2003-01-01

    Rice is a major staple food crop and a recognizedmonocotylenedousmodel plant from which gene function discovery is projected to contribute to improvements in a variety of cereals like wheat and maize. The recent release of rough drafts of the rice genome sequence for public research provides a vast resource of gene sequences whose functions need to be determined by reverse genetics methods.Characterisation of a mutant phenotype is one of the most promising approaches to link gene to function....

  12. Genome size variation in three Saccharum species

    Saccharum species are autopolyploid with ploidy level ranging from 5x to 16x, and is considered one of the most complex genomes among crop plants. In this study, the genome sizes of 28 S. spontaneum accessions, 15 S. officinarum accessions, 28 S. robustum accessions, and 12 Saccharum Hybrids were an...

  13. Glycemic index of cereals and tubers produced in China

    Yue-Xin Yang; Hong-Wei Wang; Hong-Mei Cui; Yan Wang; Lian-Da Yu; Shi-Xue Xiang; Shui-Ying Zhou

    2006-01-01

    AIM: To determine the GI of some cereals and tubers produced in China in an effort to establish the database of glycemic index (GI) of Chinese food.METHODS: Food containing 50 g carbohydrate was consumed by 8-12 healthy adults after they have been fasted for 10 h and blood glucose was monitored for 2 h.Glucose was used as reference food. GI of food was calculated according to a standard method.RESULTS: GI of 9 types of sugar and 60 kinds of food were determined.CONCLUSION: Food GI is mainly determined by nature of carbohydrate and procession. Most of cereals and tubers produced in China have similar GI with their counterparts produced in other countries.

  14. Cereal Grains: Their Impacts on Health and Food Safety

    P Rayas-Duarte; J Uriyapongson

    2006-01-01

    Cereal grains can contribute to maintain health and prevent chronic diseases by supplying biologically active components. The exact mechanism of action of these components is not completely understood, but extensive evidence suggests the antioxidants that are present in the grains are the likely source of benefits. These activities or properties might protect against coronary heart disease and diabetes. The relationships of complex carbohydrates, whole grain products and the prevention of diseases, including type2 diabetes mellitus and coronary heart disease continue to challenge the scientific community. Though cereal grains contribute to a healthy diet there are some people that can not tolerate the proteins present in the grain. This can lead to food allergies and when severe can be diagnosed as celiac disease.

  15. Genetics of cereal adaptation to the man-made habitat

    The wild progenitor species of all cereals are known with various degrees of certainty. Wild and cultivated taxa of the same species cross and their hybrids are generally fertile. This allows for a study of the genetics of domestication. A survey of the literature, however, reveals few such studies. The adaptation to disturbed habitats is genetically complex, and colonizing ability seems to have been a prerequisite for successful domestication. Natural seed dispersal is controlled by one to several linked genes, and behaves genetically as an overall dominant over loss of efficient seed dispersal mechanisms. Apical dominance, synchronized tillering, and increase in fecundity are complex, recessive genetic traits associated with cereal domestication. Racial evolution resulted from conscious selection by man and involves numerous loci. (author). 43 refs, 4 figs, 1 tab

  16. [Polycyclic aromatic hydrocarbons (PAH) in cereal breakfast products].

    Ciemniak, Artur; Chrachol, Lucyna

    2008-01-01

    Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous pollutants formed by incomplete combustion (pyrolysis) of several organic materials. PAHs occur as complex mixtures, never as individual components. They are chemically stable and highly lipophilic in nature and occur as contaminants in different food categories: vegetables, fruit, cereals, oils and fats, especially barbecued and smoked food. The present study was carried out to determine 16 PAHs in cereal products: musli, corn, oats and barley flakes, and crunchy. The analytical procedure was based on alkaline digestion, extraction with n-hexane and cleaned up in a florisil cartridge. Chromatographic separation was performed using gas chromatography (HP 6890) coupled to mass spectrometry (HP 5973). The levels of PAHs in most samples were generally low and excepting one sample of bred varied between 4.2 to 169 microg/kg. Benzo[a]pyrene, was detected in all samples, at level 0.02 microg/kg to 16 microg/kg. PMID:19143427

  17. Challenges in global genomics education

    Ashwini de Abrew

    2014-12-01

    Full Text Available In spite of high expectations for the integration of genomics into medicine, it is not clear that health providers are competent to appropriately use new genomic approaches. The issue is further complicated by differences across the globe in terms of educational systems, access to genomic technologies, and priorities in health care. In this commentary we will review some of the major challenges in educating the health provider workforce about genomic medicine.

  18. A need for determination of arsenic species at low levels in cereal-based food and infant cereals. Validation of a method by IC-ICPMS.

    Llorente-Mirandes, Toni; Calderón, Josep; Centrich, Francesc; Rubio, Roser; López-Sánchez, José Fermín

    2014-03-15

    The present study arose from the need to determine inorganic arsenic (iAs) at low levels in cereal-based food. Validated methods with a low limit of detection (LOD) are required to analyse these kinds of food. An analytical method for the determination of iAs, methylarsonic acid (MA) and dimethylarsinic acid (DMA) in cereal-based food and infant cereals is reported. The method was optimised and validated to achieve low LODs. Ion chromatography-inductively coupled plasma mass spectrometry (IC-ICPMS) was used for arsenic speciation. The main quality parameters were established. To expand the applicability of the method, different cereal products were analysed: bread, biscuits, breakfast cereals, wheat flour, corn snacks, pasta and infant cereals. The total and inorganic arsenic content of 29 cereal-based food samples ranged between 3.7-35.6 and 3.1-26.0 μg As kg(-1), respectively. The present method could be considered a valuable tool for assessing inorganic arsenic contents in cereal-based foods. PMID:24206733

  19. Quantitative estimation of sampling uncertainties for mycotoxins in cereal shipments

    Bourgeois, Florent; Lyman, Geoffrey

    2012-01-01

    Many countries receive shipments of bulk cereals from primary producers. There is a volume of work that is ongoing that seeks to arrive at appropriate standards for the quality of the shipments and the means to assess the shipments as they are out-loaded. Of concern are mycotoxin and heavy metal levels, pesticide and herbicide residue levels, and contamination by genetically modified organisms (GMOs). As the ability to quantify these contaminants improves through improved analytical technique...

  20. In Vitro Bioavailability of Mineral Nutrients in Breakfast Cereals

    Anna Lesniewicz; Mariola Kretowicz; Kamila Wierzbicka; Wieslaw Zyrnicki

    2012-01-01

    The bioavailability of both micro- and macroelements was investigated under conditions simulating the digestion processes in the human alimentary system. A one-step enzymatic extraction was applied using buffered solutions containing pepsin, trypsin, alpha-amylase or pancreatin, which are enzymes that hydrolyse different nutritional food components such as peptides, carbohydrates and lipids, as the extractant. Corn flakes and multigrain breakfast cereals containing taste additives from a loca...

  1. Starch bioengineering affects cereal grain germination and seedling establishment

    Shaik, Shahnoor Sultana; Carciofi, Massimiliano; Martens, Helle Juel; Hebelstrup, Kim; Blennow, Andreas

    2014-01-01

    Cereal grain germination is central for plant early development, and efficient germination has a major role in crop propagation and malting. Endosperm starch is the prime energy reserve in germination and seedling establishment. In this study, it was hypothesized that optimized starch granule structure, and not only the endosperm starch content per se, is important for germination and seedling establishment. For that purpose, wild-type (WT), and specifically engineered degradable hyperphospho...

  2. Prospects for India's cereal supply and demand to 2020:

    Bhalla, G. S.; Hazell, P. B. R.; John M. Kerr

    1999-01-01

    The possibility of an emerging cereal gap of serious proportions by the year 2020, is a useful illustration of the kind of constructive dialogue IFPRI hopes to encourage. It responds to several quite recent developments, notably the rapid expansion of India's industrial and service sectors since the 1991 structural reforms, the improved prospects for continued growth over the next few decades, and the likelihood of rising per capita incomes that could generate substantially increased demand f...

  3. Supply and demand for cereals in Pakistan 2010-2030:

    Nazli, Hina; Haider, Syed Hamza; Tariq, Asjad

    2012-01-01

    This paper presents the projections of future demand and supply for these two main cereals for 2010, 2015, 2020, 2025, and 2030. For projecting household demand, the Almost Ideal Demand System (LA-AIDS) is estimated for eight food items using the data of nationally representative household survey. The results are used to project the household demand under three different scenarios. These scenarios are: a business-as-usual situation (per capita income is assumed to grow at a rate of 3 percent ...

  4. Impacts of cereal ergot in food animal production

    Stephanie eCoufal-Majewski

    2016-02-01

    Full Text Available The negative impacts of ergot contamination of grain on the health of humans and animals were first documented during the 5th century AD. Although ergotism is now rare in humans, cleaning contaminated grain concentrates ergot bodies in screenings which are used as livestock feed. Ergot is found worldwide, with even low concentrations of alkaloids in the diet (<100 ppb total reducing the growth efficiency of livestock. Extended periods of increased moisture and cold during flowering promote the development of ergot in cereal crops. Furthermore, the unpredictability of climate change may have detrimental impacts to important cereal crops such as wheat, barley and rye, favouring ergot production. Allowable limits for ergot in livestock feed are confusing as they may be determined by proportions of ergot bodies or by total levels of alkaloids, measurements which may differ widely in their estimation of toxicity. The proportion of individual alkaloids including ergotamine, ergocristine, ergosine, ergocornine and ergocryptine is extremely variable within ergot bodies and the relative toxicity of these alkaloids has yet to be determined. This raises concerns that current recommendations on safe levels of ergot in feeds may be unreliable. Furthermore, the total ergot alkaloid content is greatly dependent on the geographic region, harvest year, cereal species, variety and genotype. Considerable animal to animal variation in the ability of the liver to detoxify ergot alkaloids also exists and the impacts of factors such as pelleting of feeds or use of binders to reduce bioavailability of alkaloids require study. Accordingly, unknowns greatly outnumber the knowns for cereal ergot and further study to help better define allowable limits for livestock would be welcome.

  5. SOME STUDIES ABOUT CEREALS BEHAVIOR DURING FREEZE DRYING PROCESS

    GABRIELA-VICTORIA MNERIE; D. MNERIE; D. ŢUCU

    2013-01-01

    The paper presents some special method and equipment and the principal advantages of freeze-dried food. The freeze drying is a good method of freeze-drying for make some experiments with many kind of cereals, for the improvement that in food production. It is necessary and is possible to study the corn oil extract, wheat flour, the maltodextrin from corn, modified cornstarch, spice extracts, soy sauce, hydrolyzed wheat gluten, partially hydrogenated soybean and cottonseed oil etc. That is ver...

  6. Zinc and iron speciation in the cereal grain

    Schjoerring, Jan K.; Persson, Daniel P.; Hansen, Thomas H.; Laursen, Kristian H; Husted, Søren

    2009-01-01

    Phytic acid and proteins are believed to be important for the distribution and bio-availability of zinc and iron in the cereal grain, but little quantitative information is available on the relative importance of different organic ligands. We have used several chromatographic techniques including size exclusion chromatography (SEC) hyphenated to ICP-MS to analyse the molecular speciation of Fe and Zn in tissues of barley and rice seeds. The majority of Fe in barley embryos co-eluted with P as...

  7. The structure of cell chloroplasts of spring cereals

    Vladislav V. Zhuk; Mykola M. Musyenko

    2012-01-01

    It is shown that in wheat chloroplasts thylakoids are localized on the periphery and in the central part are strong starch grains. In the chloroplasts of barley found small stack of thylakoids. Unlike wheat, the number of starch grains in chloroplasts of barley is more, but they are smaller. Oat chloroplasts were significantly smaller than the other studied cereals. Thus, cell chloroplasts of leaves of wheat, barley and oats differed significantly in size and structure, but had have clearly o...

  8. Multiple Adoption of Pest Management Technologies in UK cereal Farming

    Fraser, Iain; Sharma, Abhijit; Bailey, Alastair

    2011-01-01

    In this paper we consider the adoption of pest management technologies by farmers in UK cereal crop systems. While for the majority of UK farmers chemical control of pest outbreaks remains important, there are a range of non-chemical approaches and management practices that can be used to control pest populations. However, few of these alternatives produce levels of control that compare with chemical use in isolation. In this paper we consider the determinants of adoption of different combina...

  9. Phenolic Compounds of Cereals and Their Antioxidant Capacity.

    Van Hung, Pham

    2016-01-01

    Phenolic compounds play an important role in health benefits because of their highly antioxidant capacity. In this review, total phenolic contents (TPCs), phenolic acid profile and antioxidant capacity of the extracted from wheat, corn, rice, barley, sorghum, rye, oat, and millet, which have been recently reported, are summarized. The review shows clearly that cereals contain a number of phytochemicals including phenolics, flavonoids, anthocyanins, etc. The phytochemicals of cereals significantly exhibit antioxidant activity as measured by trolox equivalent antioxidant capacity (TEAC), 2,2-diphenyl-1-picrylhydrazyl radical scavenging, reducing power, oxygen radical absorbance capacity (ORAC), inhibition of oxidation of human low-density lipoprotein (LDL) cholesterol and DNA, Rancimat, inhibition of photochemilumenescence (PCL), and iron(II) chelation activity. Thus, the consumption of whole grains is considered to have significantly health benefits in prevention from chronic diseases such as cardiovascular disease, diabetes, and cancer because of the contribution of phenolic compounds existed. In addition, the extracts from cereal brans are considered to be used as a source of natural antioxidants. PMID:25075608

  10. Application of roasted rice bran in cereal bars

    Marina Costa Garcia

    2012-12-01

    Full Text Available The objective of this study was to evaluate the viability of using microwave-roasted rice bran as an ingredient in high-fiber cereal bars to obtain a product with good acceptability. The influence of the rice flakes, corn flakes, and roasted rice bran levels on the physical and chemical characteristics of the cereal bars was studied. The overall acceptability of three selected formulations was also evaluated. An increase in the roasted rice bran level in the formulation reduced the force of rupture and water activity, resulted in intermediate density, and caused darkening of the bars. The contents of lipid and total dietary fiber were higher in the formulation with the highest rice bran content, which was therefore classified as functional food. The formulation containing 0.34; 0.32; and 0.34 roasted rice bran, rice flakes, and corn flakes, respectively, seemed to be the best outcome. Cereal bars with roasted rice bran levels between 10 and 20% were accepted by consumers.

  11. Gamma irradiation treatment of cereal grains for chick diets

    Wheat (W), triticale (T), hulled barley (HB), hull-less barley (HLB), hulled oats (HO), and hull-less oats (HLO) were gamma irradiated (60Co) at 0, 3, 6 and 9 Mrad to study the effect of irradiation on the nutritional value of cereal grains for chicks. A significant curvilinear relationship between radiation dose and 3-wk body weight of chicks fed irradiated cereals was noted for T, HB, HLB, HO and HLO. Chicks fed W or T showed no effect or lower body weight, respectively, while body weights of chicks fed barley or oat samples were higher with irradiation. The improvement tended to be maximal at the 6 Mrad level. Irradiation significantly improved the gain-to-feed ratio for chicks fed either HO or HLO. Apparent fat retention and tibia ash were higher in chicks fed irradiated HLO than in those fed untreated HLO. In a second experiment chick body weight, apparent amino acid and fat retention, tibia ash, and gain-to-feed ratios were lower in chicks fed autoclaved (121 degrees C for 20 min) barley than in those fed untreated barley. Irradiation (6 Mrad) subsequent to autoclaving barley samples eliminated these effects. Irradiation appears to benefit cereals containing soluble or mucilagenous fiber types as typified by beta-glucan of barley and oats. These fibers appear prone to irradiation-induced depolymerization, as suggested by increased beta-glucan solubility and reduced extract viscosity for irradiated barley and oat samples

  12. Genomics Portals: integrative web-platform for mining genomics data

    Ghosh Krishnendu

    2010-01-01

    Full Text Available Abstract Background A large amount of experimental data generated by modern high-throughput technologies is available through various public repositories. Our knowledge about molecular interaction networks, functional biological pathways and transcriptional regulatory modules is rapidly expanding, and is being organized in lists of functionally related genes. Jointly, these two sources of information hold a tremendous potential for gaining new insights into functioning of living systems. Results Genomics Portals platform integrates access to an extensive knowledge base and a large database of human, mouse, and rat genomics data with basic analytical visualization tools. It provides the context for analyzing and interpreting new experimental data and the tool for effective mining of a large number of publicly available genomics datasets stored in the back-end databases. The uniqueness of this platform lies in the volume and the diversity of genomics data that can be accessed and analyzed (gene expression, ChIP-chip, ChIP-seq, epigenomics, computationally predicted binding sites, etc, and the integration with an extensive knowledge base that can be used in such analysis. Conclusion The integrated access to primary genomics data, functional knowledge and analytical tools makes Genomics Portals platform a unique tool for interpreting results of new genomics experiments and for mining the vast amount of data stored in the Genomics Portals backend databases. Genomics Portals can be accessed and used freely at http://GenomicsPortals.org.

  13. De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

    Mukesh Kumar

    Full Text Available The cereal cyst nematode (CCN, Heterodera avenae is a major pest of wheat (Triticum spp that reduces crop yields in many countries. Cyst nematodes are obligate sedentary endoparasites that reproduce by amphimixis. Here, we report the first transcriptome analysis of two stages of H. avenae. After sequencing extracted RNA from pre parasitic infective juvenile and adult stages of the life cycle, 131 million Illumina high quality paired end reads were obtained which generated 27,765 contigs with N50 of 1,028 base pairs, of which 10,452 were annotated. Comparative analyses were undertaken to evaluate H. avenae sequences with those of other plant, animal and free living nematodes to identify differences in expressed genes. There were 4,431 transcripts common to H. avenae and the free living nematode Caenorhabditis elegans, and 9,462 in common with more closely related potato cyst nematode, Globodera pallida. Annotation of H. avenae carbohydrate active enzymes (CAZy revealed fewer glycoside hydrolases (GHs but more glycosyl transferases (GTs and carbohydrate esterases (CEs when compared to M. incognita. 1,280 transcripts were found to have secretory signature, presence of signal peptide and absence of transmembrane. In a comparison of genes expressed in the pre-parasitic juvenile and feeding female stages, expression levels of 30 genes with high RPKM (reads per base per kilo million value, were analysed by qRT-PCR which confirmed the observed differences in their levels of expression levels. In addition, we have also developed a user-friendly resource, Heterodera transcriptome database (HATdb for public access of the data generated in this study. The new data provided on the transcriptome of H. avenae adds to the genetic resources available to study plant parasitic nematodes and provides an opportunity to seek new effectors that are specifically involved in the H. avenae-cereal host interaction.

  14. De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

    Kumar, Mukesh; Gantasala, Nagavara Prasad; Roychowdhury, Tanmoy; Thakur, Prasoon Kumar; Banakar, Prakash; Shukla, Rohit N; Jones, Michael G K; Rao, Uma

    2014-01-01

    The cereal cyst nematode (CCN, Heterodera avenae) is a major pest of wheat (Triticum spp) that reduces crop yields in many countries. Cyst nematodes are obligate sedentary endoparasites that reproduce by amphimixis. Here, we report the first transcriptome analysis of two stages of H. avenae. After sequencing extracted RNA from pre parasitic infective juvenile and adult stages of the life cycle, 131 million Illumina high quality paired end reads were obtained which generated 27,765 contigs with N50 of 1,028 base pairs, of which 10,452 were annotated. Comparative analyses were undertaken to evaluate H. avenae sequences with those of other plant, animal and free living nematodes to identify differences in expressed genes. There were 4,431 transcripts common to H. avenae and the free living nematode Caenorhabditis elegans, and 9,462 in common with more closely related potato cyst nematode, Globodera pallida. Annotation of H. avenae carbohydrate active enzymes (CAZy) revealed fewer glycoside hydrolases (GHs) but more glycosyl transferases (GTs) and carbohydrate esterases (CEs) when compared to M. incognita. 1,280 transcripts were found to have secretory signature, presence of signal peptide and absence of transmembrane. In a comparison of genes expressed in the pre-parasitic juvenile and feeding female stages, expression levels of 30 genes with high RPKM (reads per base per kilo million) value, were analysed by qRT-PCR which confirmed the observed differences in their levels of expression levels. In addition, we have also developed a user-friendly resource, Heterodera transcriptome database (HATdb) for public access of the data generated in this study. The new data provided on the transcriptome of H. avenae adds to the genetic resources available to study plant parasitic nematodes and provides an opportunity to seek new effectors that are specifically involved in the H. avenae-cereal host interaction. PMID:24802510

  15. Development of Combined Drought Indicator in Cereals to use its predictive value in the Agricultural Insurances: CDI_Cereal

    Jimenez-Donaire, Pilar; Tarquis, Ana M.; Giráldez, Juan V.

    2015-04-01

    The agrometeorological or agricultural drought is one of the most severe problems of agriculture. Drought damage is defined in terms of harvest loss due to precipitation shortage that limits soil moisture availability for the crops, substantially reducing crop yield. A method is proposed to identify the rain fed cereal agricultural drought in several Andalusian regions, based on the combination of three indices or anomalies: (i) standard precipitation index (SPI-3) based on Mishra and Desai (2005), (ii) soil moisture described with a water balance model based on the hydrological model by Brocca et al., 2008, and (iii) the normalized difference vegetation index (NDVI) based on Kogan (1995). Coupling the three anomalies, a Combined Drought Indicator -for rain fed cereals- (CDI) has been obtained. This indicator characterizes different warning levels of agricultural drought, which has been successfully assessed with the data of the period 2003-2013 (Jiménez-Donaire, 2014). The final aim of the proposed CDI is to design a warning system based on its components' combination to forecast the drought risk helping both farmers and agricultural insurance agencies. Keywords: drought, SPI, soil moisture, NDVI. References Brocca, L., Melone, F., Moramarco, T.(2008) On the estimation of antecedent wetness conditions in rainfall-runoff modelling. Hydrol. Process. 22, 629-642. Jiménez-Donaire, M.P. (2014) Indicador combinado de sequía para cereales y su valor predictivo en los seguros agrarios: ICS_CEREAL. Master thesis, UCO (In Spanish). Kogan, F.N., 1995. Droughts of the Late 1980s in the United States as Derived from NOAA Polar-Orbiting Satellite Data. Bull. Am. Meteorol. Soc. 76, 655-668. Mishra, A.K., Desai, V.R., 2005. Drought forecasting using stochastic models. Stoch. Environ. Res. Risk Assess. 19, 326-339. Acknowledgements First author acknowledges the Research Grant obtained from CEIGRAM in 2014

  16. Qualitative and quantitative characterization of chosen low molecular weight allergens isolated from cereal flour and cereal food stuffs

    Flodrová, Dana; Benkovská, Dagmar; Laštovičková, Markéta

    Praha: Institute of Chemical Technology Prague, 2013 - (Pulkrabová, J.; Tomaniová, M.; Nielen, M.; Hajšlová, J.). s. 163 ISBN 978-80-7080-861-0. [International Symposium on Recent Advances in Food Analysis /6./. 05.11.2013-08.11.2013, Praha] R&D Projects: GA ČR(CZ) GPP503/12/P395 Institutional support: RVO:68081715 Keywords : allergen * iTRAQ * cereals Subject RIV: CB - Analytical Chemistry, Separation

  17. WheatGenome.info: A Resource for Wheat Genomics Resource.

    Lai, Kaitao

    2016-01-01

    An integrated database with a variety of Web-based systems named WheatGenome.info hosting wheat genome and genomic data has been developed to support wheat research and crop improvement. The resource includes multiple Web-based applications, which are implemented as a variety of Web-based systems. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This portal provides links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/ . PMID:26519407

  18. A snapshot into the uptake and utilization of potential oligosaccharide prebiotics by probiotic lactobacilli and bifidobacteria as accessed by transcriptomics, functional genomics, and recombinant protein characterization

    Andersen, Joakim Mark

    Microorganisms that when administered in sufficient amounts exert a beneficial effect to the host are defined as probiotics. The positive clinical effects of probiotics, mainly belonging to the Bifidobacterium and Lactobacillus genera in treatments of irritated bowel disorders, gut infections and...... lifestyle diseases are currently well documented. Selective utilization, of primarily non-digestible carbohydrates, termed prebiotics, by probiotics has been identified as an attribute of probiotic action, however the molecular mechanisms of prebiotics utilization and in particular the specificities of...... uptake and catabolism of potential prebiotics by the probiotics Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bl-04 as model organisms, using DNA whole genome microarrays and by in silico pathway re-construction to identify key genes for further functional analysis by gene...

  19. WHAT IS BEHIND BIASED TECHNICAL CHANGE IN PRODUCTION OF CEREAL AND OILSEED CROPS IN SLOVAKIA?

    Peter FANDEL

    2014-11-01

    Full Text Available This study investigates the productivity change in the production of cereal and oilseed crops in Slovakia with special emphasis on technical change analysis. It employs a non-parametric distance function approach to measure Malmquist productivity index which is decomposed into technical efficiency change and technical change. Technical change is further decomposed into technical change magnitude and input- and output-bias indices. The productivity change components provide more detailed information about character of productivity change itself and its sources. Our results indicate that productivity in the analysed sector decreased approximately by 20% within the examined period of 1998-2007. The decrease was caused mostly by worsening the technical change (-41,6%. Indices of input- and output bias of technical change were various from unity what suggests that technical change was not Hicks’- neutral. Results of further analysis of the direction of technical change bias indicate that farms in average tend to apply fertilizers-using/seed-saving, seed-using/labour-saving, and fertilizers-using/labour-saving technical change bias over the whole sample period, as well as in the EU pre-accession and EU post-accession periods.

  20. How will conversion to organic cereal production affect carbon stocks in Swedish agricultural soils?

    Andrén, Olof; Kätterer, Thomas; Kirchmann, Holger

    2008-01-01

    Soil carbon changes were modelled over 30 years with the focus on cereal crops, since leys are often managed similarly in organic and conventional agriculture. Other crops were not considered due to difficulties in large-scale cropping of oilseed rape and potatoes organically because of pest problems. Four scenarios were used: 0%, 8% (current), 20% and 100% organic cereal production. Conversion to organic cereal crop production was found to reduce the amount of carbon stored as organic matter...

  1. Optimisation of granola breakfast cereal manufacturing process by wet granulation and pneumatic conveying

    Pathare, Pankaj B.

    2010-01-01

    This study has considered the optimisation of granola breakfast cereal manufacturing processes by wet granulation and pneumatic conveying. Granola is an aggregated food product used as a breakfast cereal and in cereal bars. Processing of granola involves mixing the dry ingredients (typically oats, nuts, etc.) followed by the addition of a binder which can contain honey, water and/or oil. In this work, the design and operation of two parallel wet granulation processes to prod...

  2. Effect of fibers and whole grain content on quality attributes of extruded cereals

    Chassagne-Berces, Sophie; Leitner, Michael; Melado Herreros, Angela; Barreiro Elorza, Pilar; Correa Hernando, Eva Cristina; Blank, Imre; Gumy, Jean Claude; Chanvrier, Helene

    2011-01-01

    Incorporation of fiber in cereals may lead to quality issues, thus decreasing consumer acceptance. This is partially due to deterioration of the microstructure, one of the primary quality attributes of cereals. The objective of this study was to better understand the mechanisms by which dietary fibers affect the quality of cereal products during extrusion-cooking. The study quantified the effect of amount and type of fiber and whole grain on (i) texture, (ii) structure, and (iii) reh...

  3. The Effect of Retail Grocery Coupons for Breakfast Cereals on Household Purchasing Behavior

    Joshua P. Berning; Zheng, Hualu

    2011-01-01

    We examine the affect of retail and manufacturer coupons on the nutritional quality of breakfast cereal purchases made by households. Using household level purchase data we find that coupon usage has a significant impact on the nutritional quality of cereals purchased by households. Specifically, we find that the average sugar content decreases and the fiber content increases. This suggests that coupons have a positive impact on the nutritional quality of cereals purchased by households, hold...

  4. Yield and nutritive value for ruminants of organic Winter cereals-bard vetch intercrops

    Díaz, A.; Carro Travieso, María Dolores; Palacios, Carlos; Saro, C.; Mateos, I; Tejido, M. L.; Ranilla, M.J.

    2015-01-01

    Organic livestock in the European Union must be fed with organic feed, and forage should be at least 60% of the diet of herbivorous animals. However, the productivity of crops in organic farming is frequently lower than that in conventional farming, and organic cultivation of winter cereals often reduces forage CP content. Intercropping of winter cereals with legumes can provide both higher forage yield and quality compared with winter cereal monocultures, but the results may differ with ...

  5. MRI texture analysis as means for addressing rehydration and milk diffusion of cereals

    Melado Herreros, Angela; Barreiro Elorza, Pilar; Rodríguez Sinobas, Leonor; Fernandez Valle, M. Encarnacion; Ruiz Cabello Osuna, Jesus Maria; Chassagne-Berces, Sophie; Chanvrier, Helene

    2011-01-01

    Cereals microstructure is one of the primary quality attributes of cereals. Cereals rehydration and milk diffusion depends on such microstructure and thus, the crispiness and the texture, which will make it more palatable for the final consumer. Magnetic Resonance Imaging (MRI) is a very powerful topographic tool since acquisition parameter leads to a wide possibility for identifying textures, structures and liquids mobility. It is suited for non-invasive imaging of water and fats. Rehydratio...

  6. MRI texture analysis as means for addressing rehydration and milk diffusion in cereals

    Melado Herreros, Angela; Barreiro Elorza, Pilar; Rodríguez Sinobas, Leonor; Fernandez Valle, M. Encarnacion; Ruiz Cabello Osuna, Jesus Maria; Chassagne-Berces, Sophie; Chanvrier, Helene

    2011-01-01

    Cereals microstructure is one of the primary quality attributes of cereals. Cereals rehydration and milk diffusion depends on such microstructure and thus, the crispiness and the texture, which will make it more palatable for the final consumer. Magnetic Resonance Imaging (MRI) is a very powerful tomographic tool since acquisition parameter leads to a wide possibility for identifying textures, structures and liquids mobility. It is suited for noninvasive imaging of water and fats. Rehydration...

  7. Effect of dietary cereals on intestinal permeability in experimental enteropathy in rats.

    Sandhu, J. S.; Fraser, D. R.

    1983-01-01

    A sensitivity to dietary cereal has been reported previously in niacin-deficient rats by measuring a change in the intestinal absorption of radioactively-labelled cellobiotol and mannitol. The possibility that other stimuli could produce this sensitivity, the range of cereals that could induce the permeability change and the nature of the toxic component in cereal have now all been investigated. Treatment with triparanol induces sensitivity in rats to wheat, rye, barley, oats, and maize but n...

  8. Dry Cereals Fortified with Electrolytic Iron or Ferrous Fumarate Are Equally Effective in Breast-fed Infants123

    Ziegler, Ekhard E.; Fomon, Samuel J.; Nelson, Steven E.; Jeter, Janice M.; Theuer, Richard C.

    2010-01-01

    Precooked, instant (dry) infant cereals in the US are fortified with electrolytic iron, a source of low reactivity and suspected low bioavailability. Iron from ferrous fumarate is presumed to be more available. In this study, we compared a dry infant rice cereal (Cereal L) fortified with electrolytic iron (54.5 mg iron/100 g cereal) to a similar cereal (Cereal M) fortified with ferrous fumarate (52.2 mg Fe/100 g) for efficacy in maintaining iron status and preventing iron deficiency (ID) in b...

  9. A need for determination of arsenic species at low levels in cereal-based food and infant cereals. Validation of a method by LC-ICPMS.

    LLORENTE-MIRANDES Toni; Calderon, Josep; Centrich, F; Rubio i Rovira, Roser; López Sánchez, José Fermín

    2013-01-01

    The present study arose from the need to determine inorganic arsenic (iAs) at low levels in cereal-based food. Validated methods with a low limit of detection (LOD) are required to analyse these kinds of food. An analytical method for the determination of iAs, methylarsonic acid (MA) and dimethylarsinic acid (DMA) in cereal-based food and infant cereals is reported. The method was optimised and validated to achieve low LODs. Ion chromatography-inductively coupled plasma mass spectrometry (LC-...

  10. Detoxification of Gramine by the Cereal Aphid Sitobion avenae

    Cai, Qing-Nian; Han, Ying; Cao, Ya-Zhong; Hu, Yuan; Zhao, Xin; Bi, Jian-Long

    2009-01-01

    Secondary metabolites play an important role in host plant resistance to insects, and insects, in turn, may develop mechanisms to counter plant resistance mechanisms. In this study, we investigated the toxicity of gramine to the cereal aphid Sitobion avenae and some enzymatic responses of S. avenae to this alkaloid. When S. avenae fed on an artificial diet containing gramine, mortality occurred in a dose-dependent manner. The LC50 of gramine was determined to be 1.248 mM. In response to grami...

  11. Influence of water-based ferrofluid upon chlorophylls in cereals

    The present experimental investigation was focused on the study of the simultaneous influence of the water-based ferrofluid and static magnetic field exposure on young cereal plants. Water-based ferrofluid, stabilized with citric acid was added daily in various concentrations, ranging between 10 and 250 μL/L, in the culture medium of maize (Zea mays) plants in their early ontogenetic stages. The used static magnetic field was about 50 mT. In order to investigate the biochemical changes of chlorophylls and total carotenoids, spectrophotometric measurements were carried out, that revealed stimulatory effects of ferrofluid and magnetic exposure upon the studied plant species

  12. SOME STUDIES ABOUT CEREALS BEHAVIOR DURING FREEZE DRYING PROCESS

    GABRIELA-VICTORIA MNERIE

    2013-07-01

    Full Text Available The paper presents some special method and equipment and the principal advantages of freeze-dried food. The freeze drying is a good method of freeze-drying for make some experiments with many kind of cereals, for the improvement that in food production. It is necessary and is possible to study the corn oil extract, wheat flour, the maltodextrin from corn, modified cornstarch, spice extracts, soy sauce, hydrolyzed wheat gluten, partially hydrogenated soybean and cottonseed oil etc. That is very porous, since it occupies the same volume as the original and so rehydrates rapidly. There is less loss of flavour and texture than with most other methods of drying.

  13. Design and Research on Mini Type Slicer for Cereal Product

    Xiaowei Jiang

    2014-11-01

    Full Text Available The research purpose is to design a mini type slicer for cereal product aiming at the rural households. It not only could be used for cutting the rice flour products and candy, but also slicing the cassava, sweet potatoes, pineapple and other crops. The article elaborates on the shape design, color design and other design of this slicer, including selecting electric motor and V belt, the design of shaft and blade, to introduce the main structure and operating principles of the slicer, based on which the conclusion has been reached.

  14. ANALYSIS OF FREE AND BOUND CHLOROPHENOXY ACIDS IN CEREALS

    Løkke, Hans

    1975-01-01

    Extraction of the chlorophenoxy acids 2,4-D and dichlorprop in cereals has been examined by analyzing barley from spraying experiments. A procedure has been set up by combination of acid hydrolysis and enzymatic degradation followed by extraction and clean up on either silica gel or basic aluminum...... sulphuric acid and resulted in residues up to ten times lower than found after the combined acid hydrolysis/enzymatic degradation procedure. In the second comparison a direct extraction was made with a mixture of 65% (v/v) acetonitrile in water. No differences were found between this and the combined acid...

  15. DEMAND FOR BREAKFAST CEREALS: WHOLE GRAINS GUIDANCE AND FOOD CHOICE

    Ishdorj, Ariun; Jensen, Helen H.

    2010-01-01

    When using household-level data to examine consumer demand it is common to find that consumers purchase only a subset of the available goods, setting the demand for the remaining goods to zero. Ignoring such censoring of the dependent variables can lead to estimators with poor statistical properties and estimates that lead to poor policy decisions. In this paper we investigate household demand for four types of breakfast cereals, such as whole grain ready-to-eat, non-whole grain ready-to-eat,...

  16. Human Genome Project

    Block, S. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Cornwall, J. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Dally, W. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Dyson, F. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Fortson, N. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Joyce, G. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Kimble, H. J. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Lewis, N. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Max, C. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Prince, T. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Schwitters, R. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Weinberger, P. [The MITRE Corporation, McLean, VA (US). JASON Program Office; Woodin, W. H. [The MITRE Corporation, McLean, VA (US). JASON Program Office

    1998-01-04

    The study reviews Department of Energy supported aspects of the United States Human Genome Project, the joint National Institutes of Health/Department of Energy program to characterize all human genetic material, to discover the set of human genes, and to render them accessible for further biological study. The study concentrates on issues of technology, quality assurance/control, and informatics relevant to current effort on the genome project and needs beyond it. Recommendations are presented on areas of the genome program that are of particular interest to and supported by the Department of Energy.

  17. Genomic Datasets for Cancer Research

    A variety of datasets from genome-wide association studies of cancer and other genotype-phenotype studies, including sequencing and molecular diagnostic assays, are available to approved investigators through the Extramural National Cancer Institute Data Access Committee.

  18. A comparison of methods to quantify prolamin contents in cereals

    Gianluca Giuberti

    2011-02-01

    Full Text Available Hydrophobic prolamins are endosperm storage proteins accounting for about 40% of the total protein in most cereals seeds. Despite the absence of a reference method, several procedures have been periodically published to quantify prolamins in cereals. The aim of this study was to compare a conventional fractionation assay (LND vs three other methods: one based on sequential extractions (HAM and two rapid turbidimetric procedures (L&H and DRO. Prolamins were extracted in duplicate on barley, corn and wheat samples. For the turbidimetric prolamin evaluation in barley and wheat, a universally available purified gliadin, as alternative to purified zein, was also tested as standard reference material (SRM. The extraction prolamin values were different among grain types (P0.05. LND agreed sufficiently well both with HAM and with L&H methods (R2=0.664 and R2=0.703, respectively, P0.05, whereas a higher prolamin quantification was obtained using HAM (P<0.05. Overall, DRO did not provide similar comparison and performance parameters with respect to other method comparisons. The effect of changing purified zein with purified gliadin was noteworthy only for L&H, both for wheat and barley samples (P<0.01. Considering the increasing attention of animal nutritionists on prolamins, our results could get useful information for routine laboratories analysis.

  19. CEREALS AS BASIS OF PREVENTING NUTRITION AGAINST OBESITY

    Ernest Šturdík

    2010-11-01

    Full Text Available Still more alarming obesity studies show in fact that it is largely due to incorrect diet and lifestyle. For suitable alternative for prevention of this disease are now considered cereal foods, mainly based on increased fiber content. The importance of dietary fiber for human organism consist primarily in its protective function before civilization diseases. It has beneficial effects on digestive physiology and it is therefore an important factor in the prevention of obesity, but also other diseases. Fiber consumption in developed countries is low and it is below the lower limit of the recommended dose. Slovaks per day take only 10-12 g of fiber, which represents only 47% of the recommended dose. Recent large-scale epidemiological studies have shown that regular consumption of wholegrain cereals can reduce the risk of heart disease and certain cancers by 30 percent. One of the factors that increase the functionality of foods is the so-called indigestible resistant starch. For its the positive impact on the physiology of digestion is referred to as prebiotics new generation of dietary fiber. The increasing availability of tasty, whole grain products rich in fiber could be health benefits. doi:10.5219/76

  20. Analysing lodging of the panicle bearing cereal teff (Eragrostis tef).

    van Delden, S H; Vos, J; Ennos, A R; Stomph, T J

    2010-05-01

    Lodging, the permanent displacement of crop plants from their vertical because of root or shoot failure, is a major yield constraint of the gluten free, panicle bearing cereal teff. The objective of this paper was to analyse the causes of lodging of teff by using, modifying and validating conventional biomechanical models. The model parameters were obtained from a field trial with two contrasting teff cultivars, using novel in situ and laboratory measurements under wet and dry conditions. Cross-species model validation was done with rice (Oryza sativa). Teff is more susceptible to root lodging than to shoot lodging, although the data indicated that shoot strength is also insufficient. Hence, simultaneously breeding for both improved root anchorage and shoot strength is advocated. The study showed that the lodging model, derived for the spike-bearing cereal wheat, needed modifications in order to be able to deal with panicle-bearing plants such as teff and rice. Water adhering to plants owing to rain or dew increased calculated lodging susceptibility. To prevent underestimation of lodging susceptibility, future lodging research should be done under completely wet conditions (water saturated soil and wetted shoots). PMID:20345637

  1. Seed protein improvement in cereals and grain legumes

    Plant breeders, molecular biologists, analytical chemists and nutritionists report on progress and achievements to date. High-lysine genotypes of maize, barley and sorghum have been produced. One high-protein variety of wheat is reported available for commercial use. Grain legumes already have high seed protein content but, compared to cereals, less of the total biological yield is available as seed, and intensive efforts are being made to produce genotypes with higher seed yield. Genetic variability is available from world germplasm collections and from induced-mutation programmes. In the basic sciences considerable advances are reported. Putative structural genes determining protein quality and quantity have been located on various chromosomes. In vitro synthesis of legume and cereal storage proteins and the isolation of some mRNA and the preparation and cloning of cDNA have been reported. Uptake and incorporation of N into amino acids, their synthesis into proteins, and interaction between protein and carbohydrate biosynthesis during seed development are discussed. Future prospects are considered including potential selection at the cellular rather than the whole plant level. In only a minority of the 64 papers is the use of nuclear techniques indicated specifically enough to justify individual entries in INIS

  2. Manufacturing cereal bars with high nutritional value through experimental design

    Roberta Covino

    2015-01-01

    Full Text Available Organizations responsible for public health throughout the world have been increasingly worrying about how to feed populations encouraging a nutritious and balanced diet in order to decrease the occurrence of chronic diseases, which are constantly related to an inadequate diet. Still, due to matters of modern lifestyle consumers are increasingly seeking convenient products. This being so, cereal bars have been an option when the matter is low calorie fast food which is also source of fiber. This study aimed at developing a cereal bar with high dietary fiber, iron, vitamins A and vitamin E, in order to easily enable adult population achieve the daily recommendation for such nutrients. Eight formulations plus the focal point were conducted through experimental planning; sensory analysis with 110 tasters for each block and texture. Afterwards, we conducted centesimal analysis for all three formulations presenting the best sensory results. After statistical analysis and comparison to the means for products available in the market, it was possible to conclude that the product developed presented great acceptance and fiber level more than twice as much as the means for commercial products.

  3. Impacts of Cereal Ergot in Food Animal Production.

    Coufal-Majewski, Stephanie; Stanford, Kim; McAllister, Tim; Blakley, Barry; McKinnon, John; Chaves, Alexandre Vieira; Wang, Yuxi

    2016-01-01

    The negative impacts of ergot contamination of grain on the health of humans and animals were first documented during the fifth century AD. Although ergotism is now rare in humans, cleaning contaminated grain concentrates ergot bodies in screenings which are used as livestock feed. Ergot is found worldwide, with even low concentrations of alkaloids in the diet (ergotamine, ergocristine, ergosine, ergocornine, and ergocryptine is extremely variable within ergot bodies and the relative toxicity of these alkaloids has yet to be determined. This raises concerns that current recommendations on safe levels of ergot in feeds may be unreliable. Furthermore, the total ergot alkaloid content is greatly dependent on the geographic region, harvest year, cereal species, variety, and genotype. Considerable animal-to-animal variation in the ability of the liver to detoxify ergot alkaloids also exists and the impacts of factors, such as pelleting of feeds or use of binders to reduce bioavailability of alkaloids require study. Accordingly, unknowns greatly outnumber the knowns for cereal ergot and further study to help better define allowable limits for livestock would be welcome. PMID:26942186

  4. Effect of infant cereals on zinc and copper absorption during weaning

    Bell, J.G.; Keen, C.L.; Loennerdal, B.

    1987-10-01

    Zinc and copper absorption from five infant cereal products mixed with water, human milk, or cow's milk was measured using an in vivo absorption model (rat pup) involving gastric intubation of extrinsically radiolabeled diets. Whole-body copper 64 uptake, nine hours after intubation, ranged from 14% to 31% of the dose given for the different cereal combinations. The resultant bioavailability of copper from human milk-cereal combinations (23% to 26%) was significantly lower than that from human milk alone (38%). Whole-body zinc 65 uptake, nine hours after intubation, ranged from 13% to 54% of the dose given for the different cereal combinations. These values were significantly lower than the whole-body zinc 65 uptake from milk alone (61%). Zinc availability was lower (13% to 25%) from dry cereal combinations that contained phytic acid (oatmeal and high-protein varieties) compared with the ready-to-serve cereal-fruit combinations (24% to 54%). The highest zinc uptake (37% to 54%) was from rice-fruit combinations that do not contain phytic acid. We estimated the amounts of zinc and copper that would be absorbed from these cereal products and speculated on the potential impact of these foods on the weaning infant's zinc and copper nutriture. Depending on the feeding practices employed during the weaning period, it is apparent that infant cereals may compromise utilization of zinc and copper from milk diets during weaning.

  5. Self-Seeded Cereal Cover Crop Effects on Interspecific Competition with Corn

    Perpetuating cereal cover crops through self-seeding may increase adoption by reducing risk and cost. Winter rye (Secale cereale L.), wheat (Triticum aestivum L.), and triticale (x Triticosecale Wittmack) were used to develop self-seeding cover crop systems in a soybean [Glycine max (L.) Merr.]-corn...

  6. Nutritive value of fall-grown cereal-grain forages over time.

    Changes in nutritive value of fall-grown cereal-grain forages can affect cattle performance. The objective of this study was to evaluate the nutritive value of various fall-grown cereal-grain forages over time. One variety each of hard red (HR) and soft red (SR) winter wheat (Triticum aestivum L.), ...

  7. Effect of infant cereals on zinc and copper absorption during weaning

    Zinc and copper absorption from five infant cereal products mixed with water, human milk, or cow's milk was measured using an in vivo absorption model (rat pup) involving gastric intubation of extrinsically radiolabeled diets. Whole-body copper 64 uptake, nine hours after intubation, ranged from 14% to 31% of the dose given for the different cereal combinations. The resultant bioavailability of copper from human milk-cereal combinations (23% to 26%) was significantly lower than that from human milk alone (38%). Whole-body zinc 65 uptake, nine hours after intubation, ranged from 13% to 54% of the dose given for the different cereal combinations. These values were significantly lower than the whole-body zinc 65 uptake from milk alone (61%). Zinc availability was lower (13% to 25%) from dry cereal combinations that contained phytic acid (oatmeal and high-protein varieties) compared with the ready-to-serve cereal-fruit combinations (24% to 54%). The highest zinc uptake (37% to 54%) was from rice-fruit combinations that do not contain phytic acid. We estimated the amounts of zinc and copper that would be absorbed from these cereal products and speculated on the potential impact of these foods on the weaning infant's zinc and copper nutriture. Depending on the feeding practices employed during the weaning period, it is apparent that infant cereals may compromise utilization of zinc and copper from milk diets during weaning

  8. ORIGIN AND EVOLUTION OF CEREALS AND METHODS OF STUDYING THEIR BIOMORPHOLOGY

    Belyuchenko I. S.

    2014-01-01

    In the article, the main issues of development of perennial cereals (morphology, phenology, formation of buds, physiology, biochemistry and research methods) are discussed. Peculiarities of regulation of development and the character of their evolution are considered. Problems of evolution of the cereals with widespread use of the data of Russian and foreign authors are discussed

  9. A Pilot Study Assesing Climate Change Impacts on Cereals

    Topcu, Sevilay; Sen, Burak; Turkes, Murat

    2010-05-01

    The spatial and temporal impacts of climate change on the growth and yield of major cereals (first and second-crop corn) as well as wheat grown in Cukurova Region in the southern Turkey have been assessed, by combining the outputs from a regional climate model with a crop growth simulation model. With its 1.1 million ha of agricultural land, the Cukurova Region is one of the major agricultural production regions in Turkey. Wheat dominates in rain-fed areas while corn crops are grown in more than 50 % of the irrigated land in the region. Thus, the Region is providing half of the country's total cereal production. Since the region has a typical Mediterranean climate with almost no rain and high temperatures during the summer months, agricultural production is vulnerable to changes in climate in terms of decreasing rainfall and increasing temperatures and consequently shortage of water resources. To predict the future climate for the period 2070-2100, the regional climate model RegCM3 conditions was performed using IPCC's SRESS-A2 scenario, and climatic parameter such as daily mean, maximum and minimum temperatures, radiation as well as total annual precipitation were selected for the simulation study. Data for the period 1961 to 1990 were used as historical reference. The WOFOST model was used to simulate cereal growths and yields for two different water availability senarios: 1) potential production and 2) water-limited production conditions. Potential growth represents the conditions where no limiting factor such as water and nutrients is present, however due to the water-limited production situation, water for irrigation is limited as a consequence of water shortage. The detailed results of previous field experiments carried out with three cereal crops in different locations with different regional soil and climate conditions were used for the verification of the WOFOST model. According to the verification results, the model simulated the yield with less than 5

  10. Structural and functional analysis of rice genome

    Akhilesh K. Tyagi; Jitendra P. Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anupama Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V. Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma

    2004-04-01

    Rice is an excellent system for plant genomics as it represents a modest size genome of 430 Mb. It feeds more than half the population of the world. Draft sequences of the rice genome, derived by whole-genome shotgun approach at relatively low coverage (4–6 X), were published and the International Rice Genome Sequencing Project (IRGSP) declared high quality (>10 X), genetically anchored, phase 2 level sequence in 2002. In addition, phase 3 level finished sequence of chromosomes 1, 4 and 10 (out of 12 chromosomes of rice) has already been reported by scientists from IRGSP consortium. Various estimates of genes in rice place the number at > 50,000. Already, over 28,000 full-length cDNAs have been sequenced, most of which map to genetically anchored genome sequence. Such information is very useful in revealing novel features of macro- and micro-level synteny of rice genome with other cereals. Microarray analysis is unraveling the identity of rice genes expressing in temporal and spatial manner and should help target candidate genes useful for improving traits of agronomic importance. Simultaneously, functional analysis of rice genome has been initiated by marker-based characterization of useful genes and employing functional knock-outs created by mutation or gene tagging. Integration of this enormous information is expected to catalyze tremendous activity on basic and applied aspects of rice genomics.

  11. The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes

    Anderson Olin D

    2008-07-01

    Full Text Available Abstract Background Wheat, barley, and rye, of tribe Triticeae in the Poaceae, are among the most important crops worldwide but they present many challenges to genomics-aided crop improvement. Brachypodium distachyon, a close relative of those cereals has recently emerged as a model for grass functional genomics. Sequencing of the nuclear and organelle genomes of Brachypodium is one of the first steps towards making this species available as a tool for researchers interested in cereals biology. Findings The chloroplast genome of Brachypodium distachyon was sequenced by a combinational approach using BAC end and shotgun sequences derived from a selected BAC containing the entire chloroplast genome. Comparative analysis indicated that the chloroplast genome is conserved in gene number and organization with respect to those of other cereals. However, several Brachypodium genes evolve at a faster rate than those in other grasses. Sequence analysis reveals that rice and wheat have a ~2.1 kb deletion in their plastid genomes and this deletion must have occurred independently in both species. Conclusion We demonstrate that BAC libraries can be used to sequence plastid, and likely other organellar, genomes. As expected, the Brachypodium chloroplast genome is very similar to those of other sequenced grasses. The phylogenetic analyses and the pattern of insertions and deletions in the chloroplast genome confirmed that Brachypodium is a close relative of the tribe Triticeae. Nevertheless, we show that some large indels can arise multiple times and may confound phylogenetic reconstruction.

  12. Potential importance of low-sodium bread and breakfast cereal to a reduced sodium diet.

    Daugirdas, John T

    2013-01-01

    Purchasing data suggest that bread and cereal products are responsible for approximately 18% of normal daily unrestricted sodium intake; this percentage may be substantially higher in subjects attempting to follow a reduced sodium diet by avoiding added salt and salty sauces and meats. Substituting with low-sodium bread would be expected to result in a sodium intake reduction of 0.6 g/day or higher, depending on the amount of bread normally eaten. Many cold breakfast cereals typically contain 0.2 to 0.3 g of sodium per serving. A number of zero-sodium or low-sodium cold cereal options are commercially available, and many hot cereals are available in forms that contain no sodium. Because bread and breakfast cereals are not commonly thought of as being salty foods, substituting these with low-sodium alternatives might help achieve additional substantial sodium intake reduction without much disruption of the diet. PMID:22633991

  13. Exploring the potential of symbiotic fungal endophytes in cereal disease suppression

    O'Hanlon, Karen; Knorr, Kamilla; Jørgensen, Lise Nistrup;

    2012-01-01

    , and environmental and health concerns surrounding the use of chemical treatments. There is currently a demand for new disease control strategies, and one such strategy involves the use of symbiotic fungal endophytes as biological control agents against fungal pathogens in cereals. Despite the fact that biological...... control by symbiotic fungal endophytes has been documented, particularly with respect to clavicipitaceous endophytes in C3 cool-season grasses, this area remains relatively underexplored in cereals. We highlight for the first time the potential in using symbiotic fungal endophytes to control foliar cereal......Cereal crops are an essential source of nutrition worldwide. The incidence and severity of fungal diseases, in particular foliar diseases such as leaf spots, mildews and rusts, is a serious challenge to cereal production, and this problem is likely to escalate with the changing global climate...

  14. Cereal foods are the major source of betaine in the Western diet--analysis of betaine and free choline in cereal foods and updated assessments of betaine intake.

    Ross, Alastair B; Zangger, Alicia; Guiraud, Seu Ping

    2014-02-15

    Betaine and its precursor choline are important components of one-carbon metabolism, remethylating homocysteine into methionine and providing methyl groups for DNA methylation. Cereals are the main source of betaine in the diet, though there is little literature available on the content of betaine in cereal products, nor on betaine intake from cereals. Betaine and free-choline concentrations were measured by liquid-chromatography with tandem mass spectrometry in a wide range of commercially available cereal foods and cereal fractions. Whole grain wheat and related fractions were the best overall common source of betaine, while the pseudocereal quinoa had the highest amount of betaine measured (3900 μg/g). Based on estimates of dietary intake data cereal foods provide approximately 60-67% of betaine in Western diets, and 20-40% of betaine in South-East Asian diets. Average intake of betaine was 131 mg/d, well below those used in intervention studies using betaine to lower blood homocysteine. PMID:24128557

  15. TIGER: tiled iterative genome assembler

    Wu Xiao-Long; Heo Yun; El Hajj Izzat; Hwu Wen-Mei; Chen Deming; Ma Jian

    2012-01-01

    Abstract Background With the cost reduction of the next-generation sequencing (NGS) technologies, genomics has provided us with an unprecedented opportunity to understand fundamental questions in biology and elucidate human diseases. De novo genome assembly is one of the most important steps to reconstruct the sequenced genome. However, most de novo assemblers require enormous amount of computational resource, which is not accessible for most research groups and medical personnel. Results We ...

  16. Cereal area and nitrogen use efficiency are drivers of future nitrogen fertilizer consumption

    Achim; Dobermann; Kenneth; G.; Cassman

    2005-01-01

    At a global scale, cereal yields and fertilizer N consumption have increased in a near-linear fashion during the past 40 years and are highly correlated with one another. However,large differences exist in historical trends of N fertilizer usage and nitrogen use efficiency (NUE)among regions, countries, and crops. The reasons for these differences must be understood to estimate future N fertilizer requirements. Global nitrogen needs will depend on: (i) changes in cropped cereal area and the associated yield increases required to meet increasing cereal demand from population and income growth, and (ii) changes in NUE at the farm level. Our analysis indicates that the anticipated 38% increase in global cereal demand by 2025 can be met by a 30% increase in N use on cereals, provided that the steady decline in cereal harvest area is halted and the yield response to applied N can be increased by 20%. If losses of cereal cropping area continue at the rate of the past 20 years (-0.33% per year) and NUE cannot be increased substantially, a 60% increase in global N use on cereals would be required to meet cereal demand. Interventions to increase NUE and reduce N losses to the environment must be accomplished at the farm- or field-scale through a combination of improved technologies and carefully crafted local policies that contribute to the adoption of improved N management; uniform regional or national directives are unlikey to be effective at both sustaining yield increases and improving NUE. Examples from several countries show that increases in NUE at rates of 1% per year or more can be achieved if adequate investments are made in research and extension. Failure to arrest the decrease in cereal crop area and to improve NUE in the world's most important agricultural systems will likely cause severe damage to environmental services at local, regional, and global scales due to a large increase in reactive N load in the environment.

  17. Genome size variation in the genus Avena.

    Yan, Honghai; Martin, Sara L; Bekele, Wubishet A; Latta, Robert G; Diederichsen, Axel; Peng, Yuanying; Tinker, Nicholas A

    2016-03-01

    Genome size is an indicator of evolutionary distance and a metric for genome characterization. Here, we report accurate estimates of genome size in 99 accessions from 26 species of Avena. We demonstrate that the average genome size of C genome diploid species (2C = 10.26 pg) is 15% larger than that of A genome species (2C = 8.95 pg), and that this difference likely accounts for a progression of size among tetraploid species, where AB downsizing in relation to their diploid progenitors. Genome size measurements could provide additional quality control for species identification in germplasm collections, especially in cases where diploid and polyploid species have similar morphology. PMID:26881940

  18. Genome sequencing and annotation of Serratia sp. strain TEL.

    Lephoto, Tiisetso E; Gray, Vincent M

    2015-12-01

    We present the annotation of the draft genome sequence of Serratia sp. strain TEL (GenBank accession number KP711410). This organism was isolated from entomopathogenic nematode Oscheius sp. strain TEL (GenBank accession number KM492926) collected from grassland soil and has a genome size of 5,000,541 bp and 542 subsystems. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession number LDEG00000000. PMID:26697332

  19. 9 CFR 318.15 - Tagging chemicals, preservatives, cereals, spices, etc., “U.S. retained.”

    2010-01-01

    ..., cereals, spices, etc., âU.S. retained.â 318.15 Section 318.15 Animals and Animal Products FOOD SAFETY AND...; REINSPECTION AND PREPARATION OF PRODUCTS General § 318.15 Tagging chemicals, preservatives, cereals, spices, etc., “U.S. retained.” When any chemical, preservative, cereal, spice, or other substance is...

  20. Co-60 uptake in some young cereal plants

    The measure of Co-60 uptake by young cereal plants is dependent on the type of soil, plant and growth conditions. Depending on the size of the uptake, a plant can be used for industrial purposes, fodder, foodstuff or for possible decontamination of the soil. Although the requirement for cobalt in higher plants is little, their contamination with Co-60 can be of interest because this radionuclide belongs to the class of the radionuclides with a great radiotoxicity. The soil-to-plant transfer factor (TF) is a measure of the radionuclide uptake in the plant. In this paper the soil-to-plant TFs for Co-60 were determined for the whole aerial part of some young plants in the cereal class that, in this stage of the development, may be used as fodder. To determine soil-to-plant TFs, plants cultivated in pots in laboratory conditions were used. The method used is similar with the plantlet method of Neubauer and Schneider. We have determined some physical, chemical and mineralogical properties of the studied soil, a brown-reddish forest type soil. The soil-to-plant TFs were calculated on the basis of the Co-60 activities determined in plant and soil dried samples. For the vegetal samples the whole aerial part of the plants was measured in millet, wheat, barley and triticale. At harvest, only a few millet plants where flowered. The results of the measurements of soil-to-plant TFs of Co-60 are the following: 0.0315±0.0017 for millet, 0.0260±0.0014 for barley, 0.0140±0.0008 for wheat and 0.0491±0.0022 for triticale. These TFs were corrected for standard conditions and were compared with data from literature. The soil-to-plant TFs for Co-60 found in the aerial part of young cereals are close to those recommended for the fodder. The obtained values prove the strong dependence of the soil-to-plant TFs for Co-60 on the type of soil and plant. (author)

  1. Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and Accessory Genomes provide Insight into Niche Adaptation

    Victor González; Alberto Mendoza Herrera; Valérie Barbe; Zoé Rouy; Claire Prigent-Combaret; Benoît Drogue; Stéphanie Borland; Erika Acosta-Cruz; Luis Lozano; Florence Wisniewski-Dyé; Patrick Mavingui

    2012-01-01

    Bacteria of the genus Azospirillum colonize roots of important cereals and grasses, and promote plant growth by several mechanisms, notably phytohormone synthesis. The genomes of several Azospirillum strains belonging to different species, isolated from various host plants and locations, were recently sequenced and published. In this study, an additional genome of an A. brasilense strain, isolated from maize grown on an alkaline soil in the northeast of Mexico, strain CBG497, was obtained. Co...

  2. Dry Cereals Fortified with Electrolytic Iron or Ferrous Fumarate Are Equally Effective in Breast-fed Infants123

    Ziegler, Ekhard E.; Fomon, Samuel J.; Nelson, Steven E.; Jeter, Janice M.; Theuer, Richard C.

    2011-01-01

    Precooked, instant (dry) infant cereals in the US are fortified with electrolytic iron, a source of low reactivity and suspected low bioavailability. Iron from ferrous fumarate is presumed to be more available. In this study, we compared a dry infant rice cereal (Cereal L) fortified with electrolytic iron (54.5 mg iron/100 g cereal) to a similar cereal (Cereal M) fortified with ferrous fumarate (52.2 mg Fe/100 g) for efficacy in maintaining iron status and preventing iron deficiency (ID) in breast-fed infants. Ascorbic acid was included in both cereals. In this prospective, randomized double-blind trial, exclusively breast-fed infants were enrolled at 1 mo and iron status was determined periodically. At 4 mo, 3 infants had ID anemia and were excluded. Ninety-five infants were randomized at 4 mo, and 69 (36 Cereal L, 33 Cereal M) completed the intervention at 9 mo. From 4 to 9 mo, they consumed daily one of the study cereals. With each cereal, 2 infants had mild ID, a prevalence of 4.2%, but no infant developed ID anemia. There were no differences in iron status between study groups. Iron intake from the study cereals was (mean ± SD) 1.21 ± 0.31 mg⋅kg−1⋅d−1 from Cereal L and 1.07 ± 0.40 mg⋅kg−1⋅d−1 from Cereal M. Eleven infants had low birth iron endowment (plasma ferritin < 55 μg/L at 2 mo) and 54% of these infants had ID with or without anemia by 4 mo. We conclude that electrolytic iron and ferrous fumarate were equally efficacious as fortificants of this infant cereal. PMID:21178077

  3. Dry cereals fortified with electrolytic iron or ferrous fumarate are equally effective in breast-fed infants.

    Ziegler, Ekhard E; Fomon, Samuel J; Nelson, Steven E; Jeter, Janice M; Theuer, Richard C

    2011-02-01

    Precooked, instant (dry) infant cereals in the US are fortified with electrolytic iron, a source of low reactivity and suspected low bioavailability. Iron from ferrous fumarate is presumed to be more available. In this study, we compared a dry infant rice cereal (Cereal L) fortified with electrolytic iron (54.5 mg iron/100 g cereal) to a similar cereal (Cereal M) fortified with ferrous fumarate (52.2 mg Fe/100 g) for efficacy in maintaining iron status and preventing iron deficiency (ID) in breast-fed infants. Ascorbic acid was included in both cereals. In this prospective, randomized double-blind trial, exclusively breast-fed infants were enrolled at 1 mo and iron status was determined periodically. At 4 mo, 3 infants had ID anemia and were excluded. Ninety-five infants were randomized at 4 mo, and 69 (36 Cereal L, 33 Cereal M) completed the intervention at 9 mo. From 4 to 9 mo, they consumed daily one of the study cereals. With each cereal, 2 infants had mild ID, a prevalence of 4.2%, but no infant developed ID anemia. There were no differences in iron status between study groups. Iron intake from the study cereals was (mean ± SD) 1.21 ± 0.31 mg⋅kg(-1)⋅d(-1) from Cereal L and 1.07 ± 0.40 mg⋅kg(-1)⋅d(-1) from Cereal M. Eleven infants had low birth iron endowment (plasma ferritin < 55 μg/L at 2 mo) and 54% of these infants had ID with or without anemia by 4 mo. We conclude that electrolytic iron and ferrous fumarate were equally efficacious as fortificants of this infant cereal. PMID:21178077

  4. DETERMINATION OF PRIMARY METABOLITES IN CEREAL MILLING FRACTIONS

    Eva Ivanišová

    2013-10-01

    Full Text Available The aim of this study was to determine of primary metabolites (content of starch, total dietary fibre, reducing sugars, proteins and amino acids in four milling fractions of selected cereals (barley, wheat, oat, spelt, rye, triticale grew in the year 2009. It was found that flour fractions (break flour and reduction flour showed the lower content of primary metabolites than bran fractions (fine bran and coarse bran. The aim of this study was also to mention the potential use of bran parts of grain - substances from these parts can be isolated and after treatment, which causes their efficiently usable for human body, they can be used for fortification of wide range of food products.

  5. Prediction of cereal feed value by near infrared spectroscopy

    Jørgensen, Johannes Ravn

    routinely by grain traders. NIRS is therefore appropriate as a quick method for the determination of FEsv and FEso, since it is rapid (approximately 1 minute per measurement of a ground test) and cheap. The aim is to develop a rapid method to analyse grain feed value. This will contribute to highlight the......-NIR instrument. It has been a challenge to develop a NIRS method to determine feed value, as it has been shown that the chemical reference analysis has been subject to considerable error. Despite this, it has been possible to develop a wide-ranging calibration model predicting the feed value FEsv and FEso for...... opportunities and problems that crop variety choices and cropping practices have on feeding value of winter wheat, triticale and spring barley. A successful development of an EDOM, EDOMi, FEso and FEsv calibration to NIRS will be a relatively cheap tool to monitor, diversify and evaluate the quality of cereals...

  6. Conservation and improvement of native pseudo cereals of Mexico

    With the purpose of preserving the genetic resources of the local races of pseudo cereals 'red Chia' (Chenopodium berlandieri subspecies nuttalliae), Chia blanca or alegria and Chia negra (belonging to Amaranths hypochondriacus), its were carried out exploration, characterization in situ, collects and conservation activities in the Opopeo and Santa Maria Huiramangaro communities, Michoacan. Field journeys were made and collections were carried out. The morphological typification and of physical and bromatologic characters of the seed were carried out. Parcels for the In situ conservation and the collections have also settled down in two towns of the Toluca Valley for multiplication and ex situ characterization. Seed has been redistributed among the in study area producers to foment the interest of the cultivation. (Author)

  7. Fusarium mycotoxins in cereals harvested from Hungarian fields.

    Tima, Helga; Brückner, Andrea; Mohácsi-Farkas, Csilla; Kiskó, Gabriella

    2016-06-01

    The Fusarium mycotoxins deoxynivalenol (DON), zearalenone (ZEN) and T-2 frequently contaminate grain crops in Middle and Eastern Europe. In this survey, 116 cereal samples (maize, wheat, barley and oat) were examined for DON, ZEN and T-2 mycotoxins. Samples were collected from different areas in two Hungarian regions (North and South Transdanubia). The method of analysis was indirect competitive ELISA. Maize was the most contaminated grain regarding DON (86%), ZEN (41%) and T-2 (55%) toxins. The average results of the deoxynivalenol and zearalenone tests of maize proved to be significantly higher than those of barley or oat. DON was the most represented Fusarium mycotoxin followed by T-2 and ZEN. The examination of these mycotoxins would be necessary at a larger scale as to re-evaluate permissible levels, so increase of the monitoring programme would be advisable for the future. PMID:26892197

  8. Starch bioengineering affects cereal grain germination and seedling establishment

    Shaik, Shahnoor Sultana; Carciofi, Massimiliano; Martens, Helle Juel;

    2014-01-01

    Cereal grain germination is central for plant early development, and efficient germination has a major role in crop propagation and malting. Endosperm starch is the prime energy reserve in germination and seedling establishment. In this study, it was hypothesized that optimized starch granule...... structure, and not only the endosperm starch content per se, is important for germination and seedling establishment. For that purpose, wild-type (WT), and specifically engineered degradable hyperphosphorylated (HP) starch and more resistant amylose-only (AO) starch barley lines were used. The transgenics...... showed no severe phenotypes and the WT and HP lines degraded the starch similarly, having 30% residual starch after 12 d of germination. However, the AO line showed significant resistance to degradation, having 57% residual starch. Interestingly, protein and β-glucan (BG) degradation was stimulated...

  9. Prediction of cereal feed value using spectroscopy and chemometrics

    Jørgensen, Johannes Ravn; Gislum, René

    2009-01-01

    determination of EDOM, EDOMi, FEso and FEsv. The outcome of a successful NIRS calibration will be a relatively cheap tool to monitor, diversify and evaluate the quality of cereals for animal feed, a possible tool to assess the feed value of new varieties in the variety testing and a useful, cheap and rapid tool...... that there is a significant variation between varieties as well as due to an environmental variation between regions and the harvest year. The chemical analysis is, however, time-consuming and costly, and it is therefore desirable to have a rapid and less expensive method, which makes it possible to...... carry out more analyses in-situ. Near infra-red reflection spectroscopy (NIRS) is appropriate as a standard analysis of dry matter, total N and starch in grains, since it is rapid (approximately 1 minute per measurement of a ground test) and cheap. NIRS is therefore appropriate as a quick method for the...

  10. Analysis of radicals induced in irradiated cereal flour using ESR

    Using electron spin resonance (ESR) spectroscopy, we revealed radicals induced in cereal flour irradiated with gamma-ray or electron beam. Sample was wheat and rice. We detected a broad singlet signal at g = 2.0. It consists of a singlet signal and a triplet signal. It suggested that the singlet signal is originated from organic free radicals and the triplet signal is from 14N. There were no differences of ESR spectra between irradiated wheat flour and rice flour. The signal intensity of radiation induced radical was tend to increase following with the increase of radiation dose level. After radiation treatment, relaxation time of radiation induced radical was changed during storage. T1 was decreased and T2 was increased. In this study, the relaxation time is calculated using the parameters obtained from the ESR signal. It is necessary to analyze the relaxation time directly with pulsed ESR spectroscopy in future. (author)

  11. Functional Agents to Biologically Control Deoxynivalenol Contamination in Cereal Grains

    Tian, Ye; Tan, Yanglan; Liu, Na; Liao, Yucai; Sun, Changpo; Wang, Shuangxia; Wu, Aibo

    2016-01-01

    Mycotoxins, as microbial secondary metabolites, frequently contaminate cereal grains and pose a serious threat to human and animal health around the globe. Deoxynivalenol (DON), a commonly detected Fusarium mycotoxin, has drawn utmost attention due to high exposure levels and contamination frequency in the food chain. Biological control is emerging as a promising technology for the management of DON contamination. Functional biological control agents (BCAs), which include antagonistic microbes, natural fungicides derived from plants and detoxification enzymes, can be used to control DON contamination at different stages of grain production. In this review, studies regarding different biological agents for DON control in recent years are summarized for the first time. Furthermore, this article highlights the significance of BCAs for controlling DON contamination, as well as the need for more practical and efficient BCAs concerning food safety. PMID:27064760

  12. Weed harrowing in winter cereal under semi-arid conditions

    Pardo, G.; Cirujeda, A.; Aibar, J.; Cavero, J.; Zaragoza, C.

    2008-07-01

    Five field experiments on barley and wheat have been carried out in North-Eastern Spain on the same field during the cropping seasons 1999-00 to 2003-04 to compare the effect of different harrowing adjustments on weed control, weed biomass and cereal yield. The variables considered were harrowing timing (pre- or early post-emergence), one or two passes, travelling direction, harrowing depth and speed compared with an untreated control and herbicide. Excepting year 2001, with very little weed emergence, mechanical control as a whole caused a significant weed plant reduction compared to the untreated plots in all years. No influence of harrowing depth and travelling speed and of pre-emergence harrowing were found in the trials. A single harrowing treatment conducted across the sowing direction gave the same or less control compared to harrowing along the sowing direction. Two harrowing passes achieved a higher efficacy than one single pass and little differences were detected if the second pass was conducted the same day, across the sowing direction or 15 days later. Despite herbicide had generally a higher efficacy than the harrowing treatments, in three out of five years it was found a mechanical control with the same control than herbicide. The effect of the different treatments on weed biomass was lower than on weed number and no significant differences were found for grain yield. Considering that an herbicide treatment in the present conditions is three times more expensive than harrowing, a single post-emergence harrowing can be considered a valid option for low and medium-infested cereal fields. (Author) 30 refs.

  13. The Nipponbare genome and the next-generation of rice genomics research in Japan.

    Matsumoto, Takashi; Wu, Jianzhong; Itoh, Takeshi; Numa, Hisataka; Antonio, Baltazar; Sasaki, Takuji

    2016-12-01

    The map-based genome sequence of the japonica rice cultivar Nipponbare remains to date as the only monocot genome that has been sequenced to a high-quality level. It has become the reference sequence for understanding the diversity among thousands of rice cultivars and its wild relatives as well as the major cereal crops that comprised the food source for the entire human race. This review focuses on the accomplishments in rice genomics in Japan encompassing the last 10 years which have led into deeper understanding of the genome, characterization of many agronomic traits, comprehensive analysis of the transcriptome, and the map-based cloning of many genes associated with agronomic traits. PMID:27447712

  14. Cereal Feeding in Fishes Nutrition for Fishery in Fresh Water from Banat Region

    Dumitru Mnerie

    2010-10-01

    Full Text Available Fisheries have traditionally been managed by direct restrictions, including seasonal and area closures, minimum mesh size, and access limitations. In recent years, licensing and an individual quota system were introduced as effortcontrol measures, in order to bring fishing effort more in line with the available resources. The overall responsibility for fisheries policy in Romania falls under auspices of the Ministry of Agriculture, Forests and Rural Development through its Directorate of Fisheries. The major objectives of Romanian fisheries are to bring the national fisheries legislation closer to the European Union (EU Common Fisheries Policy (CFP and to set up the administrative capacity and institutional building needed to cope with EU accession in 2007. In June 2001, Romania completed negotiations with EU in the area of fisheries, accepting the entire acquis communautaire without requesting any derogation or transition periods. The European Fisheries Fund will support Romania as a new EU Member State to develop a competitive, modern and dynamic fisheries sector, based on sustainable fishing and aquaculture activities, while also taking account of other important aspects such as environmental protection, the demands of the consumers and the food industry. The program is also expected to increase the competitiveness of the fisheries sector, encourage job creation and promote the growth of the aquaculture industry. The paper shows some aspects about Romanian fishery policy, an important opportunity for development research in fishery in fresh water from Banat region. Also, it is presents some research results about using the cereal feeding as fish’s nutrition, in special for common carp.

  15. The Physical and Genetic Framework of the B73 Maize Genome

    Corn (Maize) is a major cereal crop and an important model system for basic biological research. Knowledge gained from maize research can also be used to genetically improve its grass relatives such as sorghum, wheat, rice. The primary objective of the Maize Genome Sequencing Consortium (MGSC) was t...

  16. Sugar as part of a balanced breakfast? What cereal advertisements teach children about healthy eating.

    LoDolce, Megan E; Harris, Jennifer L; Schwartz, Marlene B

    2013-01-01

    Marketing that targets children with energy-dense, nutrient-poor foods is a likely contributor to the childhood obesity crisis. High-sugar ready-to-eat cereals are the packaged food most frequently promoted in child-targeted food advertising on television. The authors combined content analysis of product nutritional quality and messages presented in cereal television advertisements with syndicated data on exposure to those ads. The analysis quantifies children's exposure to specific products and messages that appear in advertisements and compares it with adult exposure. Children viewed 1.7 ads per day for ready-to-eat cereals, and 87% of those ads promoted high-sugar products; adults viewed half as many ads, and ads viewed were equally likely to promote high- and low-sugar cereals. In addition, the messages presented in high-sugar ads viewed by children were significantly more likely to convey unrealistic and contradictory messages about cereal attributes and healthy eating. For example, 91% of high-sugar cereal ads viewed by children ascribed extraordinary powers to these products, and 67% portrayed healthy and unhealthy eating behaviors. Given children's vulnerability to the influence of advertising, the emotional and mixed messages used to promote high-sugar cereals are confusing and potentially misleading. PMID:24175878

  17. A manual collection of Syt, Esyt, Rph3a, Rph3al, Doc2, and Dblc2 genes from 46 metazoan genomes - an open access resource for neuroscience and evolutionary biology

    Craxton Molly

    2010-01-01

    Full Text Available Abstract Background Synaptotagmin proteins were first identified in nervous tissue, residing in synaptic vesicles. Synaptotagmins were subsequently found to form a large family, some members of which play important roles in calcium triggered exocytic events. These members have been investigated intensively, but other family members are not well understood, making it difficult to grasp the meaning of family membership in functional terms. Further difficulty arises as families are defined quite legitimately in different ways: by common descent or by common possession of distinguishing features. One definition does not necessarily imply the other. The evolutionary range of genome sequences now available, can shed more light on synaptotagmin gene phylogeny and clarify family relationships. The aim of compiling this open access collection of synaptotagmin and synaptotagmin-like sequences, is that its use may lead to greater understanding of the biological function of these proteins in an evolutionary context. Results 46 metazoan genomes were examined and their complement of Syt, Esyt, Rph3a, Rph3al, Doc2 and Dblc2 genes identified. All of the sequences were compared, named, then examined in detail. Esyt genes were formerly named Fam62. The species in this collection are Trichoplax, Nematostella, Capitella, Helobdella, Lottia, Ciona, Strongylocentrotus, Branchiostoma, Ixodes, Daphnia, Acyrthosiphon, Tribolium, Nasonia, Apis, Anopheles, Drosophila, Caenorhabditis, Takifugu, Tetraodon, Gasterosteus, Oryzias, Danio, Xenopus, Anolis, Gallus, Taeniopygia,Ornithorhynchus, Monodelphis, Mus and Homo. All of the data described in this paper is available as additional files. Conclusions Only a subset of synaptotagmin proteins appear able to function as calcium triggers. Syt1, Syt7 and Syt9 are ancient conserved synaptotagmins of this type. Some animals carry extensive repertoires of synaptotagmin genes. Other animals of no less complexity, carry only a small

  18. The benefits of breakfast cereal consumption: a systematic review of the evidence base.

    Williams, Peter G

    2014-09-01

    There have been no comprehensive reviews of the relation of breakfast cereal consumption to nutrition and health. This systematic review of all articles on breakfast cereals to October 2013 in the Scopus and Medline databases identified 232 articles with outcomes related to nutrient intake, weight, diabetes, cardiovascular disease, hypertension, digestive health, dental and mental health, and cognition. Sufficient evidence was available to develop 21 summary evidence statements, ranked from A (can be trusted to guide practice) to D (weak and must be applied with caution). Breakfast cereal consumption is associated with diets higher in vitamins and minerals and lower in fat (grade B) but is not associated with increased intakes of total energy or sodium (grade C) or risk of dental caries (grade B). Most studies on the nutritional impact are cross-sectional, with very few intervention studies, so breakfast cereal consumption may be a marker of an overall healthy lifestyle. Oat-, barley-, or psyllium-based cereals can help lower cholesterol concentrations (grade A), and high-fiber, wheat-based cereals can improve bowel function (grade A). Regular breakfast cereal consumption is associated with a lower body mass index and less risk of being overweight or obese (grade B). Presweetened breakfast cereals do not increase the risk of overweight and obesity in children (grade C). Whole-grain or high-fiber breakfast cereals are associated with a lower risk of diabetes (grade B) and cardiovascular disease (grade C). There is emerging evidence of associations with feelings of greater well-being and a lower risk of hypertension (grade D), but more research is required. PMID:25225349

  19. Genomic Data Commons and Genomic Cloud Pilots - Google Hangout

    Join us for a live, moderated discussion about two NCI efforts to expand access to cancer genomics data: the Genomic Data Commons and Genomic Cloud Pilots. NCI subject matters experts will include Louis M. Staudt, M.D., Ph.D., Director Center for Cancer Genomics, Warren Kibbe, Ph.D., Director, NCI Center for Biomedical Informatics and Information Technology, and moderated by Anthony Kerlavage, Ph.D., Chief, Cancer Informatics Branch, Center for Biomedical Informatics and Information Technology. We welcome your questions before and during the Hangout on Twitter using the hashtag #AskNCI.

  20. Semi-dwarf cereal mutants and their use in cross-breeding III

    A Co-ordinated Research Programme on the ''Evaluation of semi-dwarf mutants as cross-breeding material in cereals'' was initiated in 1980, with the main objective to provide cereal breeders with new, alternative sources of genes for semi-dwarf, lodging resistant plant types. The present publication includes papers presented at the final Research Co-ordination Meeting. Papers presented by participants in the Co-ordinated Research Programme demonstrate that these objectives were successfully achieved. As an additional result of this programme more improved genotypes of cereals with other desirable characters as earliness, better harvest index and improved plant architecture have become available for practical breeding. Refs, figs, tabs

  1. Assessment of mixtures of mycotoxins in cereal based foods available in Portuguese market

    Martins, Carla; Assunção, Ricardo; Cunha, S.; Jager, A.; Alvito, Paula

    2015-01-01

    Mycotoxins are secondary metabolites of fungi that cause toxic and carcinogenic outcomes in humans exposed to them1. Mycotoxins affect several commodities including cereal grains and their finished products, infant formula and baby foods2. This study aimed to determine the incidence and levels of 20 mycotoxins and metabolites (AFB1, AFB2, AFG1, AFG2, AFM1, OTA, NIV, NEO, DAS, FUS-X, DON, 15-AC-DON, 3-AC-DON, HT-2, T-2, VER, T-2 TETROL, T-2 TRIOL), in breakfast cereals and cereal based baby fo...

  2. A review of knowledge: inter-row hoeing & its associated agronomy in organic cereal & pulse crops

    J. P., Welsh; N. D., Tillett; M., Home; J. A., King

    2002-01-01

    The aim of this project was to establish the “state of the art” for inter-row hoeing and its associated agronomic practices in organic cereal and pulse crops. To achieve this a detailed review of literature was undertaken. • To facilitate inter-row cultivation in cereal and pulse crops, some adjustment of row spacing may be required. For cereals, drilling crops in 25 cm rows can reduce yield compared with normal drilling practice, primarily due to greater intra-specific competition among...

  3. Increased understanding of the cereal phytase complement for better mineral bio-availability and resource management

    Brinch-Pedersen, Henrik; Madsen, Claus Krogh; Holme, Inger Bæksted; Dionisio, Giuseppe

    2014-01-01

    the bio-availability of micronutrients in human nutrition. The composition and levels of mature grain phytase activity (MGPA) in cereals is of central importance for efficient phytate hydrolysis. The MGPA varies considerably between species. Substantial activity is present in Triticeae tribe cereals...... like wheat, barley and rye whereas non-Triticeae cereals such as maize and rice have very little MGPA. Recent studies have determined the evolutionary relationships of phytases in Triticeae and non-Triticeae and highlighted the importance of the purple acid phosphatase phytases (PAPhys). In the...

  4. Using fuzzy logic for automatic control: Case study of a problem of cereals samples classification

    Lakhoua Najeh Mohamed

    2009-01-01

    Full Text Available The aim of this paper is to present the use of fuzzy logic for automatic control of industrial systems particularly the way to approach a problem of classification. We present a case study of a grading system of cereals that allows us to determine the price of transactions of cereals in Tunisia. Our contribution in this work consists in proposing not only an application of the fuzzy logic on the grading system of cereals but also a methodology enabling the proposing of a new grading system based on the concept of 'Grade' while using the fuzzy logic techniques. .

  5. Open access

    Dorch, Bertil Fabricius; Demaio, Alessandro; Hersch, Fred

    2012-01-01

    This week, we celebrate open access week – an event aimed at bringing attention to this rapidly emerging form of scientific publication and its ethical imperatives. Traditionally, knowledge breakthroughs and scientific discoveries are shared through publication in academic journals. Peer...... ideas, break down barriers to science and make knowledge accessible to the masses – but this is not actually the case....

  6. Open Access

    Suber, Peter

    2012-01-01

    The Internet lets us share perfect copies of our work with a worldwide audience at virtually no cost. We take advantage of this revolutionary opportunity when we make our work "open access": digital, online, free of charge, and free of most copyright and licensing restrictions. Open access is made possible by the Internet and copyright-holder…

  7. Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)

    Cannarozzi, Gina Michelle; Plaza-Wuethrich, Sonia; Esfeld, Korinna; Larti, Stephanie; Wilson, Yi Song; Kebede, Dejene Girma; de Castro, Edouard; Chanyalew, Solomon; Blösch, Regula; Farinelli, Laurent; Lyons, Eric; Schneider, Michel; Falquet, Laurent; Kuhlemeier, Cris; Assefa, Kebebew

    2014-01-01

    Background Tef (Eragrostis tef), an indigenous cereal critical to food security in the Horn of Africa, is rich in minerals and protein, resistant to many biotic and abiotic stresses and safe for diabetics as well as sufferers of immune reactions to wheat gluten. We present the genome of tef, the first species in the grass subfamily Chloridoideae and the first allotetraploid assembled de novo. We sequenced the tef genome for marker-assisted breeding, to shed light on the molecular mechanisms c...

  8. Tissue-Specific Transcriptomic Profiling of Sorghum propinquum using a Rice Genome Array

    Zhang, Ting; Zhao, Xiuqin; Huang, Liyu; Liu, Xiaoyue; Zong, Ying; Zhu, Linghua; Yang, Daichang; Fu, Binying

    2013-01-01

    Sorghum (Sorghum bicolor) is one of the world's most important cereal crops. S. propinquum is a perennial wild relative of S. bicolor with well-developed rhizomes. Functional genomics analysis of S. propinquum, especially with respect to molecular mechanisms related to rhizome growth and development, can contribute to the development of more sustainable grain, forage, and bioenergy cropping systems. In this study, we used a whole rice genome oligonucleotide microarray to obtain tissue-specifi...

  9. 10 Reasons to be Tantalized by the B73 Maize Genome

    Fusheng Wei; Jianwei Zhang; Shiguo Zhou; Ruifeng He; Mary Schaeffer; Kristi Collura; David Kudrna; Faga, Ben P.; Marina Wissotski; Wolfgang Golser; Rock, Susan M.; Graves, Tina A.; Fulton, Robert S.; Ed Coe; Patrick S Schnable

    2009-01-01

    Maize is a major cereal crop and an important model system for basic biological research. Knowledge gained from maize research can also be used to genetically improve its grass relatives such as sorghum, wheat, and rice. The primary objective of the Maize Genome Sequencing Consortium (MGSC) was to generate a reference genome sequence that was integrated with both the physical and genetic maps. Using a previously published integrated genetic and physical map, combined with in-coming maize geno...

  10. HaloWeb: the haloarchaeal genomes database

    DasSarma, Satyajit L; Capes, Melinda D; DasSarma, Priya; DasSarma, Shiladitya

    2010-01-01

    Background Complete genome sequencing together with post-genomic studies provide the opportunity for a comprehensive 'systems biology' understanding of model organisms. For maximum effectiveness, an integrated database containing genomic, transcriptomic, and proteomic data is necessary. Description To improve data access and facilitate functional genomic studies on haloarchaea in our laboratory, a dedicated database and website, named HaloWeb, was developed. It incorporates all finished and p...

  11. Teff, an Orphan Cereal in the Chloridoideae, Provides Insights into the Evolution of Storage Proteins in Grasses

    Xu, Jianhong; Bennetzen, Jeffrey L.; Messing, Joachim

    2016-01-01

    Seed storage proteins (SSP) in cereals provide essential nutrition for humans and animals. Genes encoding these proteins have undergone rapid evolution in different grass species. To better understand the degree of divergence, we analyzed this gene family in the subfamily Chloridoideae, where the genome of teff (Eragrostis tef) has been sequenced. We find gene duplications, deletions, and rapid mutations in protein-coding sequences. The main SSPs in teff, like other grasses, are prolamins, here called eragrostins. Teff has γ- and δ-prolamins, but has no β-prolamins. One δ-type prolamin (δ1) in teff has higher methionine (33%) levels than in maize (23–25%). The other δ-type prolamin (δ2) has reduced methionine residues (<10%) and is phylogenetically closer to α prolamins. Prolamin δ2 in teff represents an intermediate between δ and α types that appears to have been lost in maize and other Panicoideae, and was replaced by the expansion of α-prolamins. Teff also has considerably larger numbers of α-prolamin genes, which we further divide into five sub-groups, where α2 and α5 represent the most abundant α-prolamins both in number and in expression. In addition, indolines that determine kernel softness are present in teff and the panicoid cereal called foxtail millet (Setaria italica) but not in sorghum or maize, indicating that these genes were only recently lost in some members of the Panicoideae. Moreover, this study provides not only information on the evolution of SSPs in the grass family but also the importance of α-globulins in protein aggregation and germplasm divergence. PMID:27190000

  12. Drought-resistant cereals: impact on water sustainability and nutritional quality.

    Thomas, W T B

    2015-08-01

    This review uses production and climate data to examine global and local production trends that can be related to events such as drought. UK grain quality data is also available and provides an overview of trends in protein content. Literature surveys show a consistent reduction in grain size due to the effects of temperature and/or drought. A review of gene expression studies showed that most genes involved in starch synthesis are down regulated under heat stress. Net protein production is also reduced under heat and/or drought stress but apparently to a lesser degree as the reduction in grain mass is larger, resulting in an increase in protein concentration. Modelling has suggested that adaptation could be achieved by moving production to more extreme latitudes but other research suggests that simply transferring germplasm from one region to another is unlikely to be successful. Another review has identified drought tolerance phenotypes that could be used to breed more drought tolerant crops. At the time of the review, the authors concluded that phenotypic selection was generally preferable to forms of marker-assisted breeding and have used the approach to produce drought tolerant wheat cultivars. Transgenic approaches have also been shown to improve drought tolerance under controlled environment conditions but there are no results to show how well these results translate into improved crop performance under field conditions. The recent advances in genomic data and detecting marker-trait associations suggest that marker-assisted breeding will play a much more important role in breeding drought tolerant cereals in the future. PMID:25702698

  13. Comparative Evaluation of Functional Properties of Some Commonly Used Cereal and Legume Flours and Their Blends

    Haq Nawaz

    2015-12-01

    Full Text Available Functional properties such as protein solubility, swelling capacity, water holding capacity, gelling ability, bulk density and foaming capacity of flours of some commonly used cereals and legume (wheat, refined wheat, maize and chickpea and their blends were studied. Blends of flours were prepared by mixing equal proportions of selected floors. Statistically significant difference  in studied functional properties except bulk density was observed among cereal flours and their blends. Chickpea flour was found to possess comparatively high water holding capacity, protein solubility index and swelling capacity. The functional properties of maize and wheat flours were found to be improved when blended with chickpea. Chickpea flour and its blends with cereal flours were found to possess good functional score and suggested as favorable candidates for use in the preparation of viscous foods and bakery products. The data provide guidelines regarding the improvement in functional properties of economically favorable cereal flours.

  14. Ochratoxin A and ochratoxin-producing fungi on cereal grain in China: a review.

    Zhihong, Liang; Kunlun, Huang; Yunbo, Luo

    2015-01-01

    The mycotoxin ochratoxin A (OTA) is known to be the main contaminant of cereal grain and has become increasingly important in recent years. Therefore, a survey of ochratoxigenic fungi and OTA contamination in China is a special challenge. This paper summarises data on cereals and moulds (Aspergillus niger, Penicillium verrucosum, Aspergillus ochraceus, for example) and on grain and OTA from 1973 by searching Chinese information databases (NCKI, VIP, DuXiu etc.), calculating the OTA-producing mould detection rate, referring to sampling locations, latitude and temperature, and also combining six grain-producing areas of ochratoxigenic fungi and OTA positive rate through a comprehensive analysis. It is concluded that in China rice (excluding shell rice) has less OTA contamination than wheat or maize. The contamination of cereal grains with Aspergillus section Nigri (formerly of the A. niger group) is a serious problem in China, and these fungi may be the main ochratoxigenic fungi on cereals. PMID:25571918

  15. Dietary fibre fractions in cereal foods measured by a new integrated AOAC method.

    Hollmann, Juergen; Themeier, Heinz; Neese, Ursula; Lindhauer, Meinolf G

    2013-10-01

    The reliable determination of soluble, insoluble and total dietary fibre in baked goods and cereal flours is an important issue for research, nutritional labelling and marketing. We compared total dietary fibre (TDF) contents of selected cereal based foods determined by AOAC Method 991.43 and the new AOAC Method 2009.01. Fifteen bread and bakery products were included in the study. Our results showed that TDF values of cereal products determined by AOAC Method 2009.01 were always significantly higher than those determined by AOAC Method 991.43. This was explained by the inclusion of low molecular weight soluble fibre fractions and resistant starch fractions in the TDF measurement by AOAC 2009.01. This documents that nutritional labelling of cereal products poses the challenge how to update TDF data in nutrient databases in a reasonable time with an acceptable expenditure. PMID:23601411

  16. Changes in time of sowing, flowering and maturity of cereals in Europe under climate change

    Olesen, Jørgen E; Børgesen, Christen Duus; Elsgaard, Lars;

    2012-01-01

    crop development, but exact changes will also depend on changes in varieties as affected by plant breeding and variety choices. This study aimed to assess changes in timing of major phenological stages of cereal crops in Northern and Central Europe under climate change. Records on dates of sowing......The phenological development of cereal crops from emergence through flowering to maturity is largely controlled by temperature, but also affected by day length and potential physiological stresses. Responses may vary between species and varieties. Climate change will affect the timing of cereal...... increased with increasing mean annual temperature of the location, indicating that varieties are well adapted to given conditions. The responses of wheat and oats were largest for the period from flowering to maturity. Changes in timing of cereal phenology by 2040 were assessed for two climate model...

  17. Evaluation of Antioxidant Properties in Cereals: Study of Some Traditional Italian Wheats

    Alessandra Durazzo

    2015-09-01

    Full Text Available Whole grain cereals contain a wide range of phytochemicals and it is often difficult to ascribe protective effects on metabolic health to any one particular constituent. The interactions among bioactive components, which contribute highly to the total antioxidant capacity of cereals, represent the first step in the evaluation of food potential health benefits. This research focused on the determination of antioxidant properties in grains and whole flours of some traditional Italian wheats. Results showed that hydrolysable polyphenols in grains are 85% of total polyphenols and contribute 95% of the total antioxidant properties, which indicates that hydrolysable polyphenols represent an important fraction of polyphenols in cereals. The distinction between extractable and non-extractable antioxidants was shown to be of paramount importance for an adequate determination of antioxidant capacity in cereals and represents a key element in the definition of potential nutritional value of the food matrix under consideration.

  18. The prevalence and distribution of Fusarium species in Norwegian cereals: a survey

    Kosiak, B.; Torp, M.; Skjerve, E.;

    2003-01-01

    In the period 1994-1996 a post-harvest survey was conducted in wheat, barley and oats to assess the occurrence and geographic distribution of Fusarium species in Norwegian cereals. The number of samples investigated was adjusted proportionally to the production of each cereal species within...... the regions. A total of 695 grain samples were analysed. The amount of Fusarium infection varied with cereal species and region of origin. The most frequently isolated Fusarium spp. from all samples were F. avenaceum, F. poae, F. tricinctum and F. culmorum. Other important toxigenic Fusarium spp. were F...... and F. culmorum demonstrated in this study , corresponded to previously reported DON-distribution, although DON seems to be produced by different species in different regions. Distribution of the isolated Fusarium species and comparison between cereals and locations are discussed....

  19. A trace element study of commercial infant milk and cereal formulas

    Three commercial infant milk formulas, one commercial infant cereal formula and one locally grown cereal used for infant feeding in Nigeria were analyzed for 17 trace elements, viz: Al, As, Br, Ca, Ce, Cl, Co, Cr, Fe, K, Mg, Mn, Na, Rb, Sb, Se and Zn. The commercial milk formulas contain adequate amounts of Ca, Cl, Co, Fe, K, Mg, Mn, Na and Zn, the locally grown cereal contains adequate amounts of Co, K, Mg, Mn and Zn and low in Ca, Cl, Fe and Na while the commercial cereal has adequate amounts of Ca, Cl, Co, K, Mg, Na and Zn. None of the samples analyzed was found to contain any elements up to threshold toxicity limits of concentrations. (author) 13 refs.; 3 tabs

  20. An evaluation of EDTA compounds for iron fortification of cereal-based foods.

    Hurrell, R F; Reddy, M B; Burri, J; Cook, J D

    2000-12-01

    Fe absorption was measured in adult human subjects consuming different cereal foods fortified with radiolabelled FeSO4, ferrous fumarate or NaFeEDTA, or with radiolabelled FeSO4 or ferric pyrophosphate in combination with different concentrations of Na2EDTA. Mean Fe absorption from wheat, wheat-soyabean and quinoa (Chenopodium quinoa) infant cereals fortified with FeSO4 or ferrous fumarate ranged from 0.6 to 2.2%. For each infant cereal, mean Fe absorption from ferrous fumarate was similar to that from FeSO4 (absorption ratio 0.91-1.28). Mean Fe absorption from FeSO4-fortified bread rolls was 1.0% when made from high-extraction wheat flour and 5.7% when made from low-extraction wheat flour. Fe absorption from infant cereals and bread rolls fortified with NaFeEDTA was 1.9-3.9 times greater than when the same product was fortified with FeSO4. Both high phytate content and consumption of tea decreased Fe absorption from the NaFeEDTA-fortified rolls. When Na2EDTA up to a 1:1 molar ratio (EDTA:Fe) was added to FeSO4-fortified wheat cereal and wheat-soyabean cereal mean Fe absorption from the wheat cereal increased from 1.0% to a maximum of 5.7% at a molar ratio of 0.67:1, and from the wheat-soyabean cereal from 0.7% to a maximum of 2.9% at a molar ratio of 1:1. Adding Na2EDTA to ferric pyrophosphate-fortified wheat cereal did not significantly increase absorption (P > 0.05). We conclude that Fe absorption is higher from cereal foods fortified with NaFeEDTA than when fortified with FeSO4 or ferrous fumarate, and that Na2EDTA can be added to cereal foods to enhance absorption of soluble Fe-fortification compounds such as FeSO4. PMID:11177208

  1. Genome update: the 1000th genome - a cautionary tale

    Lagesen, Karin; Ussery, David; Wassenaar, Gertrude Maria

    2010-01-01

    There are now more than 1000 sequenced prokaryotic genomes deposited in public databases and available for analysis. Currently, although the sequence databases GenBank, DNA Database of Japan and EMBL are synchronized continually, there are slight differences in content at the genomes level...... for a variety of logistical reasons, including differences in format and loading errors, such as those caused by file transfer protocol interruptions. This means that the 1000th genome will be different in the various databases. Some of the data on the highly accessed web pages are inaccurate, leading to false...... conclusions for example about the largest bacterial genome sequenced. Biological diversity is far greater than many have thought. For example, analysis of multiple Escherichia coli genomes has led to an estimate of around 45 000 gene families more genes than are recognized in the human genome. Moreover...

  2. Land Access, Land Rental and Food Security: Evidence from Kenya

    Muraoka, Rie; Jin, Songqing; Jayne, Thomas S.

    2014-01-01

    Constrained access to land is increasingly recognized as a problem impeding rural household welfare in densely populated areas of Africa. This study utilizes household and plot level data from rural Kenya to explore the linkage between land access and food security. We find that a 10% increase in operated land size would increase total cereal consumption and home produced food consumption by 0.8% and 2.0%, respectively. We also find that land rental is the dominant mechanism that poor rural f...

  3. Experiences with intercropping design - a survey about pulse cereal-combinations in Europe

    von Fragstein und Niemsdorff, P.; Knudsen, Marie Trydeman; Gooding, M.J.;

    2008-01-01

    A survey was carried out within five European countries with regard to the practice of cereal grain legume intercropping. The mostly given combination was spring barleyspring pea beside 27 other combinations between pulses and cereals. 72 % of all examples consisted of spring varieties, the rest ...... regulation, unequal maturation and additional costs for separation were mostly named. The interviewed farmers showed predominantly positive prospects for the development of intercropping on their farms, problems with sowing techniques were only of minor importance....

  4. U.S. READY-TO-EAT BREAKFAST CEREALS' EXPANSION IN CHINA

    Zhang, Fang

    1999-01-01

    US ready-to-eat breakfast cereals entered the Chinese market in the mid-1990s. In the past years, this all-American food has been generating business losses. Such underperformance calls for prompt strategic modification by the cereal investors. This study focuses on foreign entry strategy and product strategy, and characterizes a combination of literature review and case study. Literature review seeks appropriate theories and frameworks, and therefore renders a sound conceptual foundation for...

  5. Material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements

    Mastio, Michael Joseph, Jr.

    2005-11-01

    Nearly seventy-five years ago, the single screw extruder was introduced as a means to produce metal products. Shortly after that, the extruder found its way into the plastics industry. Today much of the world's polymer industry utilizes extruders to produce items such as soda bottles, PVC piping, and toy figurines. Given the significant economical advantages of extruders over conventional batch flow systems, extruders have also migrated into the food industry. Food applications include the meat, pet food, and cereal industries to name just a few. Cereal manufacturers utilize extruders to produce various forms of Ready-to-Eat (RTE) cereals. These cereals are made from grains such as rice, oats, wheat, and corn. The food industry has been incorrectly viewed as an extruder application requiring only minimal energy control and performance capability. This misconception has resulted in very little research in the area of material wear and failure mode analysis of breakfast cereal extruders. Breakfast cereal extruder barrels and individual screw elements are subjected to the extreme pressures and temperatures required to shear and cook the cereal ingredients, resulting in excessive material wear and catastrophic failure of these components. Therefore, this project focuses on the material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements, modeled as a Discrete Time Markov Chain (DTMC) process in which historical data is used to predict future failures. Such predictive analysis will yield cost savings opportunities by providing insight into extruder maintenance scheduling and interchangeability of screw elements. In this DTMC wear analysis, four states of wear are defined and a probability transition matrix is determined based upon 24,041 hours of operational data. This probability transition matrix is used to predict when an extruder component will move to the next state of wear and/or failure. This information can be used to determine

  6. A Content Analysis on the Nutritional Portrait of the Breakfast Cereal Television Advertisements

    ŞAHİN, VOLKAN

    2013-01-01

    Childhood obesity and related health problems are affecting millions of children worldwide. Recent studies indicate that food/beverage TV commercials are one of the contributing factors of rising obesity rates. In the States, where the obesity rate is high, there has been a public outcry for more stringent rules regulating food related TV ads. This study investigates breakfast cereal ads which were derived from more than 1600 hours of television programming. Cereal ads were selected for this ...

  7. Spatiotemporal Dynamics of Oligofructan Metabolism and Suggested Functions in Developing Cereal Grains

    Manuela ePeukert; Johannes eThiel; Hans-Peter eMock; Doris eMarko; Winfriede eWeschke; Andrea eMatros

    2016-01-01

    Oligofructans represent one of the most important groups of sucrose-derived water–soluble carbohydrates in the plant kingdom. In cereals, oligofructans accumulate in above ground parts of the plants (stems, leaves, seeds) and their biosynthesis leads to the formation of both types of glycosidic linkages (ß(2,1); ß(2,6)-fructans) or mixed patterns. In recent studies, tissue- and development- specific distribution patterns of the various oligofructan types in cereal grains have been shown, whic...

  8. Spatiotemporal Dynamics of Oligofructan Metabolism and Suggested Functions in Developing Cereal Grains

    Peukert, Manuela; Thiel, Johannes; Mock, Hans-Peter; Marko, Doris; Weschke, Winfriede; Matros, Andrea

    2016-01-01

    Oligofructans represent one of the most important groups of sucrose-derived water–soluble carbohydrates in the plant kingdom. In cereals, oligofructans accumulate in above ground parts of the plants (stems, leaves, seeds) and their biosynthesis leads to the formation of both types of glycosidic linkages [β(2,1); β(2,6)-fructans] or mixed patterns. In recent studies, tissue- and development- specific distribution patterns of the various oligofructan types in cereal grains have been shown, whic...

  9. Preference Heterogeneity and Habit Persistence: The Case of Breakfast Cereal Consumption

    Thunström, Linda

    2008-01-01

    This paper estimates the strength and heterogeneity across households in state dependence associated with breakfast cereal consumption, where positive state dependence implies habit persistence and negative state dependence implies variety-seeking in consumption. The analysis relies on a discrete choice model and finds that breakfast cereal consumption is generally highly habitual, but the degree of habit persistence exhibits heterogeneity across households. In addition, some households can b...

  10. "Determination the best cereal substitute for wheat in wheat allergic children "

    Ghiasy Esfahany Z "

    2002-07-01

    Full Text Available Background: Food allergy is one of the most important among other allergic diseases. Although it is less prevalent in adult but in infants it’s prevalence was reported as much as 8 percent. In part, wheat is one of the six main food allergens in infant and in other part there is extensive cross reactivity between the cereals. Therefore the aim of this study is selection of the best food substitute for wheat among other cereals. Materials and Methods: 24 patients with definitive diagnosis of type one hypersensitivity reaction to wheat were entered in this study. Skin prick test and serum specific IgE (Eliza with 6 members of cereals family (wheat, barley, oat, Rye-Rice & Corn were performed for them and open food challenge test was also done with three more available of the cereals (corn, Rice, barley in our food culture and so comparison between allergenicity of wheat flour and wheat bran with skin prick test were done. Results: The Skin prick tests (SPTs were positive in 66.7 percent for Barley, 100 percent for wheat bran and 80-100 percent for other cereals. The results of specific IgE for wheat, Barley were positive in 94.5 percent, 68 percent, 39 percent of patients respectively and the results for other cereals were positive in less than 11 percent of cases. The results of food challenge test, for barley were positive in 60 percent of cases and for Rice and Corn were negative in all cases. Conclusion: In the base of food challenge test as the gold standard test, the best food substitute for wheat sensitive patient between other cereals, were Corn and Rice respectively. It is important to emphasis that will be needed to perform oral food challenge in hospital with complete emergency equipment before introducing any other cereals as food substitute for wheat, specially Barley.

  11. Suitability of cereal porridges as substrate for probiotic strain Lactobacillus rhamnosus GG

    Ľubomír Valík; Monika Kocková

    2013-01-01

    The aim of this work was to find new substrates suitable for growth and metabolism of probiotic strain Lactobacillus rhamnosus GG, which would be interesting for development of new functional food. The growth and metabolic activity of Lb. rhamnosus GG in cereal (rye, barley, oat and millet) porridges were monitored during fermentation process. Cereal and porridges, were inoculated with this strain at two initial levels to obtain approximately 5 or 6 log colony form units per gram of suspensio...

  12. Cereal Yield Modeling in Finland Using Optical and Radar Remote Sensing

    Jouko Kleemola; Juha Hyyppä; Heikki Laurila; Mika Karjalainen

    2010-01-01

    During 1996–2006, the Ministry of Agriculture and Forestry in Finland (MAFF), MTT Agrifood Research and the Finnish Geodetic Institute performed a joint remote sensing satellite research project. It evaluated the applicability of optical satellite (Landsat, SPOT) data for cereal yield estimations in the annual crop inventory program. Four Optical Vegetation Indices models (I: Infrared polynomial, II: NDVI, III: GEMI, IV: PARND/FAPAR) were validated to estimate cereal baseline yield levels (yb...

  13. PROBLEM OF RISK ELEMENTS ACCUMULATION IN CEREAL RAW MATERIALS AND FOODSTUFFS

    RASTISLAV MIKUŠKA; ZDENKA MUCHOVÁ; MARTINA FIKSELOVÁ

    2009-01-01

    Four kinds of cereals- wheat (Triticum aestivum L.), barley (Hordeum sativum L.), triticosecale (Triticosecale sativum L.) and oat (Avena sativa L) were taken from risk region of Slovakia in order to determine risk elements content in individual parts of grain. The results indicate significant differences in the content of the risk elements in four mill streams. Among observed cereals the highest content of risk metals decreased in order: oat>barley>triticosecale >spring wheat>win...

  14. Impact of selected antagonistic fungi on Fusarium species – toxigenic cereal pathogens

    Delfina Popiel; Hanna Kwaśny; Jerzy Chełkowski; Łukasz Stępień; Magdalena Laskowska

    2013-01-01

    Fusarium-ear blight is a destructive disease in various cereal-growing regions and leads to significant yield and quality losses for farmers and to contamination of cereal grains with mycotoxins, mainly deoxynivalenol and derivatives, zearalenone and moniliformin. Fusarium pathogens grow well and produce significant inoculum on crop resiudues. Reduction of mycotoxins production and pathogen sporulation may be influenced by saprophytic fungi, exhibiting antagonistic effect. Dual culture bioass...

  15. Simultaneous determination of nitrogen and phosphorus in cereals using 14 MeV Neutron Activation Analysis

    A method using 14 MeV neutron activation analysis was developed form non-destructive simultaneous determination of N and P in cereals. The samples were irradiated 5 min. after 0,5 min. decay time. The induced activities were measured using gamma spectrometry with Nal(Tl) well type detector. The accuracy, precision and detection limits obtained are discussed as well as the analytical results for different types of cereals. (Author) 10 refs., 8 tab., 1 fig

  16. Ochratoxin A producing Penicillium verrucosum isolates from cereals reveal large AFLP fingerprinting variability

    Frisvad, J C; Lund, F; Elmholt, S.

    2005-01-01

    Aims: To examine if molecular amplified fragment length polymorphism (AFLP) fingerprinting of the only ochratoxin A-producing species in European cereals, Penicillium verrucosum, can be used as a method in hazard analysis using critical control points (HACCP). Methods and Results: A total of 321 isolates of P. verrucosum were isolated from ochratoxin A contaminated cereals from Denmark (oats), UK (wheat and barley) and Sweden (wheat). Of these, 236 produced ochratoxin A as determined by t...

  17. Cereals for developing gluten-free products and analytical tools for gluten detection

    Cristina M. Rosell; Barro Losada, Francisco; C. Sousa; Mena, M.C.

    2014-01-01

    Recently, gluten free foods have attracted much research interest motivated by the increasing market. Despite the motivation for developing gluten-free foods it is necessary to have a scientific basis for developing gluten-free foods and the tools for detecting the peptide sequence that could be immune-toxic to some persons. This review will be focused primarily on the cereal-based commodities available for developing gluten free blends, considering naturally gluten-free cereals in addition t...

  18. Ebolavirus comparative genomics.

    Jun, Se-Ran; Leuze, Michael R; Nookaew, Intawat; Uberbacher, Edward C; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; Lund, Ole; Buzard, Gregory S; Pedersen, Thomas D; Wassenaar, Trudy M; Ussery, David W

    2015-09-01

    The 2014 Ebola outbreak in West Africa is the largest documented for this virus. To examine the dynamics of this genome, we compare more than 100 currently available ebolavirus genomes to each other and to other viral genomes. Based on oligomer frequency analysis, the family Filoviridae forms a distinct group from all other sequenced viral genomes. All filovirus genomes sequenced to date encode proteins with similar functions and gene order, although there is considerable divergence in sequences between the three genera Ebolavirus, Cuevavirus and Marburgvirus within the family Filoviridae. Whereas all ebolavirus genomes are quite similar (multiple sequences of the same strain are often identical), variation is most common in the intergenic regions and within specific areas of the genes encoding the glycoprotein (GP), nucleoprotein (NP) and polymerase (L). We predict regions that could contain epitope-binding sites, which might be good vaccine targets. This information, combined with glycosylation sites and experimentally determined epitopes, can identify the most promising regions for the development of therapeutic strategies.This manuscript has been authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan). PMID:26175035

  19. Development of genome viewer (Web Omics Viewer) for managing databases of cucumber genome

    Wojcieszek, M.; RóŻ, P.; Pawełkowicz, M.; Nowak, R.; Przybecki, Z.

    Cucumber is an important plant in horticulture and science world. Sequencing projects of C. sativus genome enable new methodological aproaches in further investigation of this species. Accessibility is crucial to fully exploit obtained information about detail structure of genes, markers and other characteristic features such contigs, scaffolds and chromosomes. Genome viewer is one of tools providing plain and easy way for presenting genome data for users and for databases administration. Gbrowse - the main viewer has several very useful features but lacks in managing simplicity. Our group developed new genome browser Web Omics Viewer (WOV), keeping functionality but improving utilization and accessibility to cucumber genome data.

  20. Sensorial analysis evaluation in cereal bars preserved by ionizing radiation processing

    Villavicencio, A. L. C. H.; Araújo, M. M.; Fanaro, G. B.; Rela, P. R.; Mancini-Filho, J.

    2007-11-01

    Gamma-rays utilized as a food-processing treatment to eliminate insect contamination is well established in food industries. Recent troubles in Brazilian cereal bars commercialization require a special consumer's attention because some products were contaminated by insects. To solve the problem, food-irradiation treatment was utilized as a safe and effective solution. The final product was free of insect contamination. The aim of this study was to determine the best radiation dose processing utilized to disinfestations and detect some change on sensorial characteristic by sensorial analysis in cereal bars. In this study, three different kinds of cereal bars were purchased in São Paulo (Brazil) in supermarkets and irradiated with 1.0, 2.0 and 3.0 kGy at "Instituto de Pesquisas Energéticas e Nucleares" (IPEN-CNEN/SP). The samples were treated with ionizing radiation using a 60Co gamma-ray facility (Gammacell 220, A.E.C.L.). That radiation doses were used successfully as an anti-insect treatment in the cereal bars, since in some food industries doses up to 3.0 kGy are used to guarantee at least a dose of 1.0 kGy in internal cereal bars package. Sensorial analysis was necessary since cereal bars contain ingredients very sensitive to ionizing radiation process.

  1. Sensorial analysis evaluation in cereal bars preserved by ionizing radiation processing

    Villavicencio, A.L.C.H. [Instituto de Pesquisas Energeticas e Nucleares-IPEN-CNEN/SP, Centro de Tecnologia das Radiacoes, Lab. de Deteccao de Alimentos Irradiados, Travessa R. No. 400, Cidade Universitaria, CEP 05508-910, Sao Paulo (Brazil)], E-mail: villavic@ipen.br; Araujo, M.M.; Fanaro, G.B.; Rela, P.R. [Instituto de Pesquisas Energeticas e Nucleares-IPEN-CNEN/SP, Centro de Tecnologia das Radiacoes, Lab. de Deteccao de Alimentos Irradiados, Travessa R. No. 400, Cidade Universitaria, CEP 05508-910, Sao Paulo (Brazil); Mancini-Filho, J. [Faculdade de Ciencias Farmaceuticas-FCF/USP, Departamento de Alimentos e Nutricao Experimental, Lab. de Lipides, Sao Paulo (Brazil)], E-mail: jmancini@usp.br

    2007-11-15

    Gamma-rays utilized as a food-processing treatment to eliminate insect contamination is well established in food industries. Recent troubles in Brazilian cereal bars commercialization require a special consumer's attention because some products were contaminated by insects. To solve the problem, food-irradiation treatment was utilized as a safe and effective solution. The final product was free of insect contamination. The aim of this study was to determine the best radiation dose processing utilized to disinfestations and detect some change on sensorial characteristic by sensorial analysis in cereal bars. In this study, three different kinds of cereal bars were purchased in Sao Paulo (Brazil) in supermarkets and irradiated with 1.0, 2.0 and 3.0 kGy at 'Instituto de Pesquisas Energeticas e Nucleares' (IPEN-CNEN/SP). The samples were treated with ionizing radiation using a {sup 60}Co gamma-ray facility (Gammacell 220, A.E.C.L.). That radiation doses were used successfully as an anti-insect treatment in the cereal bars, since in some food industries doses up to 3.0 kGy are used to guarantee at least a dose of 1.0 kGy in internal cereal bars package. Sensorial analysis was necessary since cereal bars contain ingredients very sensitive to ionizing radiation process.

  2. The Gluten-Free Diet: Testing Alternative Cereals Tolerated by Celiac Patients

    Carolina Sousa

    2013-10-01

    Full Text Available A strict gluten-free diet (GFD is the only currently available therapeutic treatment for patients with celiac disease, an autoimmune disorder of the small intestine associated with a permanent intolerance to gluten proteins. The complete elimination of gluten proteins contained in cereals from the diet is the key to celiac disease management. However, this generates numerous social and economic repercussions due to the ubiquity of gluten in foods. The research presented in this review focuses on the current status of alternative cereals and pseudocereals and their derivatives obtained by natural selection, breeding programs and transgenic or enzymatic technology, potential tolerated by celiac people. Finally, we describe several strategies for detoxification of dietary gluten. These included enzymatic cleavage of gliadin fragment by Prolyl endopeptidases (PEPs from different organisms, degradation of toxic peptides by germinating cereal enzymes and transamidation of cereal flours. This information can be used to search for and develop cereals with the baking and nutritional qualities of toxic cereals, but which do not exacerbate this condition.

  3. The gluten-free diet: testing alternative cereals tolerated by celiac patients.

    Comino, Isabel; Moreno, María de Lourdes; Real, Ana; Rodríguez-Herrera, Alfonso; Barro, Francisco; Sousa, Carolina

    2013-10-01

    A strict gluten-free diet (GFD) is the only currently available therapeutic treatment for patients with celiac disease, an autoimmune disorder of the small intestine associated with a permanent intolerance to gluten proteins. The complete elimination of gluten proteins contained in cereals from the diet is the key to celiac disease management. However, this generates numerous social and economic repercussions due to the ubiquity of gluten in foods. The research presented in this review focuses on the current status of alternative cereals and pseudocereals and their derivatives obtained by natural selection, breeding programs and transgenic or enzymatic technology, potential tolerated by celiac people. Finally, we describe several strategies for detoxification of dietary gluten. These included enzymatic cleavage of gliadin fragment by Prolyl endopeptidases (PEPs) from different organisms, degradation of toxic peptides by germinating cereal enzymes and transamidation of cereal flours. This information can be used to search for and develop cereals with the baking and nutritional qualities of toxic cereals, but which do not exacerbate this condition. PMID:24152755

  4. Sensorial analysis evaluation in cereal bars preserved by ionizing radiation processing

    Gamma-rays utilized as a food-processing treatment to eliminate insect contamination is well established in food industries. Recent troubles in Brazilian cereal bars commercialization require a special consumer's attention because some products were contaminated by insects. To solve the problem, food-irradiation treatment was utilized as a safe and effective solution. The final product was free of insect contamination. The aim of this study was to determine the best radiation dose processing utilized to disinfestations and detect some change on sensorial characteristic by sensorial analysis in cereal bars. In this study, three different kinds of cereal bars were purchased in Sao Paulo (Brazil) in supermarkets and irradiated with 1.0, 2.0 and 3.0 kGy at 'Instituto de Pesquisas Energeticas e Nucleares' (IPEN-CNEN/SP). The samples were treated with ionizing radiation using a 60Co gamma-ray facility (Gammacell 220, A.E.C.L.). That radiation doses were used successfully as an anti-insect treatment in the cereal bars, since in some food industries doses up to 3.0 kGy are used to guarantee at least a dose of 1.0 kGy in internal cereal bars package. Sensorial analysis was necessary since cereal bars contain ingredients very sensitive to ionizing radiation process

  5. Phytate degradation determines the effect of industrial processing and home cooking on iron absorption from cereal-based foods.

    Hurrell, Richard F; Hurrell, Richard F; Reddy, Manju B; Burri, Joseph; Cook, James D

    2002-08-01

    The aim of the present study was to compare Fe absorption from industrially-manufactured and home-cooked cereal foods. Fe absorption was measured using the radiolabelled Fe extrinsic tag technique in thirty-nine adult human subjects from cereal porridges manufactured by extrusion cooking or roller-drying, and from the same cereal flours after home cooking to produce pancakes, chappattis or bread. One series of cereal porridges was amylase-treated in addition before roller-drying. Fe absorption was relatively low from all products, ranging from 1.8-5.5 % for rice, 2.5-3.5 % for maize, 4.9-13.6 % for low-extraction wheat, and foods. The phytic acid content remained high after drying of the cereal porridges being about 1.20, 1.70, 3.20, 3.30 mg/g in low-extraction wheat, rice, high-extraction wheat and maize products respectively, and could explain the low Fe absorption. There were little or no differences in Fe absorption between the extruded and roller-dried cereals, although amylase pre-treatment increased Fe absorption from the roller-dried rice cereal 3-fold. This was not due to phytate degradation but possibly because of the more liquid nature of the cereal meal as fed. There were similarly few or no differences in Fe absorption between the industrially-processed cereals and home-cooked cereals made into pancakes or chappattis. Bread-making, however, degraded phytic acid to zero in the low-extraction wheat flour and Fe absorption increased to 13.6 %, the greatest from all cereal foods tested. It is concluded that Fe absorption from extruded, roller-dried or home-cooked cereal foods is similarly low and that only those cooking procedures such as bread-making, which extensively degrades phytic acid, or amylase pre-treatment, which substantially liquifies cereal porridges, improve Fe absorption. PMID:12144715

  6. A tradeoff frontier for global nitrogen use and cereal production

    Nitrogen fertilizer use across the world’s croplands enables high-yielding agricultural production, but does so at considerable environmental cost. Imbalances between nitrogen applied and nitrogen used by crops contributes to excess nitrogen in the environment, with negative consequences for water quality, air quality, and climate change. Here we utilize crop input-yield models to investigate how to minimize nitrogen application while achieving crop production targets. We construct a tradeoff frontier that estimates the minimum nitrogen fertilizer needed to produce a range of maize, wheat, and rice production levels. Additionally, we explore potential environmental consequences by calculating excess nitrogen along the frontier using a soil surface nitrogen balance model. We find considerable opportunity to achieve greater production and decrease both nitrogen application and post-harvest excess nitrogen. Our results suggest that current (circa 2000) levels of cereal production could be achieved with ∼50% less nitrogen application and ∼60% less excess nitrogen. If current global nitrogen application were held constant but spatially redistributed, production could increase ∼30%. If current excess nitrogen were held constant, production could increase ∼40%. Efficient spatial patterns of nitrogen use on the frontier involve substantial reductions in many high-use areas and moderate increases in many low-use areas. Such changes may be difficult to achieve in practice due to infrastructure, economic, or political constraints. Increases in agronomic efficiency would expand the frontier to allow greater production and environmental gains

  7. Genetic modification of cereal crops by direct gene transfer

    On the basis of efficient in vitro culture and regeneration systems, reproducible transformation methods for different cereal crops were developed. Scutellar tissue of the immature embryos of hexaploid wheat and maize were used as targets for microprojectile mediated gene transfer. Bombardment of haploid microspores resulted in homozygous, transgenic and fertile barley plants. Each target was the subject of individual optimization processes of bombardment conditions by analysing the transient β-glucuronidase activity. Furthermore, phosphinothricin resistance conferred by the bar gene turned out to be a suitable selectable marker for regenerating transgenic crop plants. Summarizing the results of independent transformation experiments for wheat and maize led to a transformation efficiency of one transgenic plant per 83 and 230 bombardment immature embryos, respectively. For barley, the average of all the experiments was one transgenic plant per 2.8 x 1016 bombarded microspores. Primary transformants and progeny were analyzed for the enzyme activity of the two marker enzymes introduced and integration of the corresponding genes by Southern blot experiments. Stable integration of the foreign DNA and its inheritance by progeny were demonstrated. All the transformed plants showed normal morphology and their development and flowering were comparable with those of seed derived plants. (author). 28 refs, 2 tabs

  8. Seed protein improvement in cereals and grain legumes

    Based upon the recommendations of a panel of experts in 1968, the Joint FAO/IAEA Division of Atomic Energy in Food and Agriculture established an international programme to improve the protein content and quality in seed crops of importance to developing countries. Reports of previous meetings held under this programme have been published by the IAEA. The meeting on Seed Protein Improvement in Cereals and Grain Legumes, held in September 1978, marked the formal end of the FAO/IAEA/GSF Co-ordinated Research Programme on Seed Protein Improvement. It reviewed the progress achieved. Volume I covers 27 papers. Following a review of the world protein and nutritional situation, the contributions are grouped under the main headings of the need for and use of variability in protein characteristics; genetics, biochemistry and physiology of seed storage proteins; analytical and nutritional techniques; and coordinated research programmes under a joint FAO/IAEA/GSF programme on grain protein improvement. Individual papers of direct relevance are cited as separate entries in INIS

  9. Irradiation on cereal bars incorporated with pineapple skin

    One of the major current concerns to the food industry is the management of residues generated in its production processes. Thus, several studies have been developed, seeking alternative uses for these residues, in order to minimize environmental impacts and add value to products previously discarded. Combining this idea with the increasingly search for healthy and practical products, by consumers, this study aimed the characterization of cereal bars irradiated with doses of 0 kGy, 1 kGy, and 2 kGy, incorporated with dried pineapple skin. The following analyses were carried out: moisture, proteins, lipids, ashes, carbohydrates, energetic value, antioxidant potential, phenolic content, organic acids, and fatty acids profile. The results observed for the centesimal composition did not vary as a function of the radiation doses used, reducing only the levels of antioxidants, phenolic compounds, and organic acids. The product showed potential for becoming an effective way of reusing a food industry residue and the irradiation interfered on the nutritional characteristics of the final product. (author)

  10. A tradeoff frontier for global nitrogen use and cereal production

    Mueller, Nathaniel D.; West, Paul C.; Gerber, James S.; MacDonald, Graham K.; Polasky, Stephen; Foley, Jonathan A.

    2014-05-01

    Nitrogen fertilizer use across the world’s croplands enables high-yielding agricultural production, but does so at considerable environmental cost. Imbalances between nitrogen applied and nitrogen used by crops contributes to excess nitrogen in the environment, with negative consequences for water quality, air quality, and climate change. Here we utilize crop input-yield models to investigate how to minimize nitrogen application while achieving crop production targets. We construct a tradeoff frontier that estimates the minimum nitrogen fertilizer needed to produce a range of maize, wheat, and rice production levels. Additionally, we explore potential environmental consequences by calculating excess nitrogen along the frontier using a soil surface nitrogen balance model. We find considerable opportunity to achieve greater production and decrease both nitrogen application and post-harvest excess nitrogen. Our results suggest that current (circa 2000) levels of cereal production could be achieved with ˜50% less nitrogen application and ˜60% less excess nitrogen. If current global nitrogen application were held constant but spatially redistributed, production could increase ˜30%. If current excess nitrogen were held constant, production could increase ˜40%. Efficient spatial patterns of nitrogen use on the frontier involve substantial reductions in many high-use areas and moderate increases in many low-use areas. Such changes may be difficult to achieve in practice due to infrastructure, economic, or political constraints. Increases in agronomic efficiency would expand the frontier to allow greater production and environmental gains.

  11. Where do Protein Bodies of Cereal Seeds Come From?

    Pedrazzini, Emanuela; Mainieri, Davide; Marrano, Claudia A.; Vitale, Alessandro

    2016-01-01

    Protein bodies of cereal seeds consist of ordered, largely insoluble heteropolymers formed by prolamin storage proteins within the endoplasmic reticulum (ER) of developing endosperm cells. Often these structures are permanently unable to traffic along the secretory pathway, thus representing a unique example for the use of the ER as a protein storage compartment. In recent years, marked progress has been made in understanding what is needed to make a protein body and in formulating hypotheses on how protein body formation might have evolved as an efficient mechanism to store large amounts of protein during seed development, as opposed to the much more common system of seed storage protein accumulation in vacuoles. The major key evolutionary events that have generated prolamins appear to have been insertions or deletions that have disrupted the conformation of the eight-cysteine motif, a protein folding motif common to many proteins with different functions and locations along the secretory pathway, and, alternatively, the fusion between the eight-cysteine motif and domains containing additional cysteine residues. PMID:27540384

  12. Streptomyces strains producing mitochondriotoxic antimycin A found in cereal grains.

    Rasimus-Sahari, Stiina; Mikkola, Raimo; Andersson, Maria A; Jestoi, Marika; Salkinoja-Salonen, Mirja

    2016-02-01

    Reasons for mammalian cell toxicity observed in barley and spring wheat grains were sought. Streptomyces sp. isolates from wheat and barley produced heat-stable methanol-soluble substances which inhibited the motility of exposed porcine spermatozoa used as a toxicity indicator. Several barley isolates produced antimycin A (2 to 5 ng/mg wet wt of biomass), a macrolide antibiotic known to block oxygen utilization in mitochondria. The antimycin-producing isolates were members of the Streptomyces albidoflavus group. In in vitro assays with porcine kidney tubular epithelial cells, the specific toxicity of antimycin A towards mitochondria was higher than that of the mycotoxin enniatin B but lower than that of the mitochondriotoxins cereulide and paenilide, produced by food-related Bacillus cereus and Paenibacillus tundrae, respectively. The toxic wheat isolates, related to Streptomyces sedi, did not produce antimycin A and or any other known toxin. Our results suggest that the presence of toxin-producing streptomycetes in stored cereal grains may pose a thus far unrecognized threat for food and feed safety. PMID:26619316

  13. From the concept of totipotency to biofortified cereals.

    Potrykus, Ingo

    2015-01-01

    I was a college teacher when opportunity opened a path into academia. A fascination with totipotency channeled me into research on tissue culture. As I was more interested in contributions to food security than in scientific novelty, I turned my attention to the development of genetic modification technology for cereals. From my cell culture experience, I had reasons not to trust Agrobacterium for that purpose, and I developed direct gene transfer instead. In the early 1990s, I became aware of the problem of micronutrient deficiency, particularly vitamin A deficiency in rice-eating populations. Golden Rice, which contains increased amounts of provitamin A, was probably instrumental for the concept of biofortification to take off. I realized that this rice would remain an academic exercise if product development and product registration were not addressed, and this is what I focused on after my retirement. Although progress is slowly being made, had I known what this pursuit would entail, perhaps I would not have started. Hopefully Golden Rice will reach the needy during my lifetime. PMID:25423078

  14. Accessible Knowledge - Knowledge on Accessibility

    Kirkeby, Inge Mette

    2015-01-01

    Although serious efforts are made internationally and nationally, it is a slow process to make our physical environment accessible. In the actual design process, architects play a major role. But what kinds of knowledge, including research-based knowledge, do practicing architects make use of when...... designing accessible environments? The answer to the question is crucially important since it affects how knowledge is distributed and how accessibility can be ensured. In order to get first-hand knowledge about the design process and the sources from which they gain knowledge, 11 qualitative interviews...... were conducted with architects with experience of designing for accessibility. The analysis draws on two theoretical distinctions. The first is research-based knowledge versus knowledge used by architects. The second is context-independent knowledge versus context-dependent knowledge. The practitioners...

  15. Comparative Genome Viewer

    The amount of information about genomes, both in the form of complete sequences and annotations, has been exponentially increasing in the last few years. As a result there is the need for tools providing a graphical representation of such information that should be comprehensive and intuitive. Visual representation is especially important in the comparative genomics field since it should provide a combined view of data belonging to different genomes. We believe that existing tools are limited in this respect as they focus on a single genome at a time (conservation histograms) or compress alignment representation to a single dimension. We have therefore developed a web-based tool called Comparative Genome Viewer (Cgv): it integrates a bidimensional representation of alignments between two regions, both at small and big scales, with the richness of annotations present in other genome browsers. We give access to our system through a web-based interface that provides the user with an interactive representation that can be updated in real time using the mouse to move from region to region and to zoom in on interesting details.

  16. Open access

    Suber, Peter

    2012-01-01

    The Internet lets us share perfect copies of our work with a worldwide audience at virtually no cost. We take advantage of this revolutionary opportunity when we make our work "open access": digital, online, free of charge, and free of most copyright and licensing restrictions. Open access is made possible by the Internet and copyright-holder consent, and many authors, musicians, filmmakers, and other creators who depend on royalties are understandably unwilling to give their consent. But for 350 years, scholars have written peer-reviewed journal articles for impact, not for money, and are free to consent to open access without losing revenue. In this concise introduction, Peter Suber tells us what open access is and isn't, how it benefits authors and readers of research, how we pay for it, how it avoids copyright problems, how it has moved from the periphery to the mainstream, and what its future may hold. Distilling a decade of Suber's influential writing and thinking about open access, this is the indispe...

  17. Genomic research perspectives in Kazakhstan

    Ainur Akilzhanova

    2014-01-01

    Full Text Available Introduction: Technological advancements rapidly propel the field of genome research. Advances in genetics and genomics such as the sequence of the human genome, the human haplotype map, open access databases, cheaper genotyping and chemical genomics, have transformed basic and translational biomedical research. Several projects in the field of genomic and personalized medicine have been conducted at the Center for Life Sciences in Nazarbayev University. The prioritized areas of research include: genomics of multifactorial diseases, cancer genomics, bioinformatics, genetics of infectious diseases and population genomics. At present, DNA-based risk assessment for common complex diseases, application of molecular signatures for cancer diagnosis and prognosis, genome-guided therapy, and dose selection of therapeutic drugs are the important issues in personalized medicine. Results: To further develop genomic and biomedical projects at Center for Life Sciences, the development of bioinformatics research and infrastructure and the establishment of new collaborations in the field are essential. Widespread use of genetic tools will allow the identification of diseases before the onset of clinical symptoms, the individualization of drug treatment, and could induce individual behavioral changes on the basis of calculated disease risk. However, many challenges remain for the successful translation of genomic knowledge and technologies into health advances, such as medicines and diagnostics. It is important to integrate research and education in the fields of genomics, personalized medicine, and bioinformatics, which will be possible with opening of the new Medical Faculty at Nazarbayev University. People in practice and training need to be educated about the key concepts of genomics and engaged so they can effectively apply their knowledge in a matter that will bring the era of genomic medicine to patient care. This requires the development of well

  18. Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes

    Lysøe, Erik; Frandsen, Rasmus John Normand; Divon, Hege H.;

    2016-01-01

    Fusarium langsethiae is a widespread pathogen of small grain cereals, causing problems with T-2 and HT-2 toxin contamination in grains every year. In an effort to better understand the biology of this fungus, we present a draft genome sequence of F. langsethiae Fl201059 isolated from oats in Norway...

  19. Joint evolution of spatial integration and product segmentation on agricultural markets: the case of cereals in Mali

    Aubert, Magali; Bignebat, Celine; Egg, Johny

    2006-01-01

    Within the context of liberalisation experienced by the Malian economy since the beginning of the 1990s, spatial integration of cereal markets has been considered as a major tool as to avoid localised shortages due to production shortfalls. However, market dynamic reveals since then new patterns: the diversification of urban consumer demand towards "modern cereals", in particular rice and maize, drives the segmentation of the cereal market. As consumer s are likely to substitute traditional c...

  20. Investigation of lactic acid bacteria mediated bioprotection with applications in cereal industry. Case-study: malting process

    Oliveira, Pedro Miguel Rodrigues

    2014-01-01

    Antifungal compounds produced by Lactic acid bacteria (LAB) metabolites can be natural and reliable alternative for reducing fungal infections pre- and post-harvest with a multitude of additional advantages for cereal-base products. Toxigenic and spoilage fungi are responsible for numerous diseases and economic losses. This thesis includes an overview of the impact fungi have on aspects of the cereal food chain. The applicability of LAB in plant protection and cereal industry is discussed in ...

  1. Prehistoric cereal foods from Greece and Bulgaria: investigation of starch microstructure in experimental and archaeological charred remains

    Valamoti, Soultana-Maria; Samuel, Delwen; Bayram, Mustafa; Elena MARINOVA

    2008-01-01

    Abstract In order to investigate ancient cereal cooking practices, the microstructure of preserved starch in charred ground cereal remains recovered from prehistoric sites in Greece and Bulgaria has been analysed. A comparative modern set of cooked and subsequently charred cereals was produced. By scanning electron microscopy it is demonstrated that, under some conditions, distinctive cooked starch structure survives the charring process. Charring alone can occasionall...

  2. Access French

    Grosz, Bernard

    2014-01-01

    Access is the major new language series designed with the needs of today's generation of students firmly in mind. Whether learning for leisure or business purposes or working towards a curriculum qualification, Access French is specially designed for adults of all ages and gives students a thorough grounding in all the skills required to understand, speak, read and write contemporary French from scratch. The coursebook consists of 10 units covering different topic areas, each of which includes Language Focus panels explaining the structures covered and a comprehensive glossary. Learning tips

  3. The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics

    Blake, J. A.; Bult, C. J.; J.A. Kadin; J.E. Richardson; Eppig, J T

    2010-01-01

    The Mouse Genome Database (MGD) is the community model organism database for the laboratory mouse and the authoritative source for phenotype and functional annotations of mouse genes. MGD includes a complete catalog of mouse genes and genome features with integrated access to genetic, genomic and phenotypic information, all serving to further the use of the mouse as a model system for studying human biology and disease. MGD is a major component of the Mouse Genome Informatics (MGI, http://www...

  4. Genome wide association mapping for the tolerance to the polyamine oxidase inhibitor guazatine in Arabidopsis thaliana

    Kostadin Evgeniev eAtanasov

    2016-04-01

    Full Text Available Guazatine is a potent inhibitor of polyamine oxidase (PAO activity. In agriculture, guazatine is used as non-systemic contact fungicide efficient in the protection of cereals and citrus fruits against disease. The composition of guazatine is complex, mainly constituted by a mixture of synthetic guanidated polyamines (polyaminoguanidines. Here we have studied the effects from exposure to guazatine in the weed Arabidopsis thaliana. We report that micromolar concentrations of guazatine are sufficient to inhibit growth of Arabidopsis seedlings and induce chlorosis, whereas germination is barely affected. We observed the occurrence of quantitative variation in the response to guazatine between 107 randomly chosen Arabidopsis accessions. This enabled us to undertake genome-wide association (GWA mapping that identified a locus on chromosome one associated with guazatine tolerance. CHLOROPHYLLASE 1 (CLH1 within this locus was studied as candidate gene, together with its paralog (CLH2. The analysis of independent clh1-2, clh1-3, clh2-3, clh2-2 and double clh1-2 clh2-3 mutant alleles indicated that CLH1 and/or CLH2 loss-of-function or expression down-regulation promote guazatine tolerance in Arabidopsis. We report a natural mechanism by which Arabidopsis populations can overcome toxicity by the fungicide guazatine.

  5. Genome Wide Association Mapping for the Tolerance to the Polyamine Oxidase Inhibitor Guazatine in Arabidopsis thaliana.

    Atanasov, Kostadin E; Barboza-Barquero, Luis; Tiburcio, Antonio F; Alcázar, Rubén

    2016-01-01

    Guazatine is a potent inhibitor of polyamine oxidase (PAO) activity. In agriculture, guazatine is used as non-systemic contact fungicide efficient in the protection of cereals and citrus fruits against disease. The composition of guazatine is complex, mainly constituted by a mixture of synthetic guanidated polyamines (polyaminoguanidines). Here, we have studied the effects from exposure to guazatine in the weed Arabidopsis thaliana. We report that micromolar concentrations of guazatine are sufficient to inhibit growth of Arabidopsis seedlings and induce chlorosis, whereas germination is barely affected. We observed the occurrence of quantitative variation in the response to guazatine between 107 randomly chosen Arabidopsis accessions. This enabled us to undertake genome-wide association (GWA) mapping that identified a locus on chromosome one associated with guazatine tolerance. CHLOROPHYLLASE 1 (CLH1) within this locus was studied as candidate gene, together with its paralog (CLH2). The analysis of independent clh1-2, clh1-3, clh2-3, clh2-2, and double clh1-2 clh2-3 mutant alleles indicated that CLH1 and/or CLH2 loss-of-function or expression down-regulation promote guazatine tolerance in Arabidopsis. We report a natural mechanism by which Arabidopsis populations can overcome toxicity by the fungicide guazatine. PMID:27092150

  6. Cancer genomics

    Norrild, Bodil; Guldberg, Per; Ralfkiær, Elisabeth Methner

    2007-01-01

    Almost all cells in the human body contain a complete copy of the genome with an estimated number of 25,000 genes. The sequences of these genes make up about three percent of the genome and comprise the inherited set of genetic information. The genome also contains information that determines whe...

  7. Perspectives for geographically oriented management of fusarium mycotoxins in the cereal supply chain.

    van der Fels-Klerx, H J; Booij, C J H

    2010-06-01

    This article provides an overview of available systems for management of Fusarium mycotoxins in the cereal grain supply chain, with an emphasis on the use of predictive mathematical modeling. From the state of the art, it proposes future developments in modeling and management and their challenges. Mycotoxin contamination in cereal grain-based feed and food products is currently managed and controlled by good agricultural practices, good manufacturing practices, hazard analysis critical control points, and by checking and more recently by notification systems and predictive mathematical models. Most of the predictive models for Fusarium mycotoxins in cereal grains focus on deoxynivalenol in wheat and aim to help growers make decisions about the application of fungicides during cultivation. Future developments in managing Fusarium mycotoxins should include the linkage between predictive mathematical models and geographical information systems, resulting into region-specific predictions for mycotoxin occurrence. The envisioned geographically oriented decision support system may incorporate various underlying models for specific users' demands and regions and various related databases to feed the particular models with (geographically oriented) input data. Depending on the user requirements, the system selects the best fitting model and available input information. Future research areas include organizing data management in the cereal grain supply chain, developing predictive models for other stakeholders (taking into account the period up to harvest), other Fusarium mycotoxins, and cereal grain types, and understanding the underlying effects of the regional component in the models. PMID:20537276

  8. Major cereal grain fibers and psyllium in relation to cardiovascular health.

    Bernstein, Adam M; Titgemeier, Brigid; Kirkpatrick, Kristin; Golubic, Mladen; Roizen, Michael F

    2013-05-01

    Numerous studies reveal the cardiovascular benefits of consuming dietary fiber and, especially, cereal fiber. Cereal fiber is associated with cardiovascular risk reduction through multiple mechanisms and consuming a variety of cereal fiber sources offers health benefits specific to the source. Certain cereal fibers have been studied more extensively than others and provide greater support for their incorporation into a healthful diet. β-glucan from oats or barley, or a combination of whole oats and barley, and soluble fiber from psyllium reduces the risk of coronary heart disease; inulin-type fructans added to foods and beverages may modestly decrease serum triacylglycerols; arabinoxylan and resistant starch may improve glycemic control. Individuals with low cereal fiber intake should increase their intake of whole grains in order to receive the benefits of whole grains in addition to fiber. For those adjusting to the texture and palatability of whole grains, turning to added-fiber products rich in β-glucan and psyllium may allow them to reach their fiber goals without increasing caloric intake. PMID:23628720

  9. Major Cereal Grain Fibers and Psyllium in Relation to Cardiovascular Health

    Michael F. Roizen

    2013-04-01

    Full Text Available Numerous studies reveal the cardiovascular benefits of consuming dietary fiber and, especially, cereal fiber. Cereal fiber is associated with cardiovascular risk reduction through multiple mechanisms and consuming a variety of cereal fiber sources offers health benefits specific to the source. Certain cereal fibers have been studied more extensively than others and provide greater support for their incorporation into a healthful diet. β-glucan from oats or barley, or a combination of whole oats and barley, and soluble fiber from psyllium reduces the risk of coronary heart disease; inulin-type fructans added to foods and beverages may modestly decrease serum triacylglycerols; arabinoxylan and resistant starch may improve glycemic control. Individuals with low cereal fiber intake should increase their intake of whole grains in order to receive the benefits of whole grains in addition to fiber. For those adjusting to the texture and palatability of whole grains, turning to added-fiber products rich in β-glucan and psyllium may allow them to reach their fiber goals without increasing caloric intake.

  10. Mass spectrometric profiling of lipids in intestinal tissue from rats fed cereals processed for medical conditions.

    Dowlatshahi Pour, Masoumeh; Jennische, Eva; Lange, Stefan; Ewing, Andrew G; Malmberg, Per

    2016-06-01

    Time-of-flight secondary ion mass spectrometry (ToF-SIMS) was used for lipid profiling of intestine tissue sections from rats fed specially processed cereals and rats fed ordinary feed as a control. This cereal is known to increase the activity of antisecretory factor in plasma and the exact mechanism for the activation process at the cellular level is unclear. ToF-SIMS has been used to track food induced changes in lipid content in intestinal tissue sections to gain insight into the possible mechanisms involved. Data from 20 intestine sections belonging to four different rats from each group of control and specially processed cereals-fed rats were obtained using the stage scan macroraster with a lateral resolution of 5 μm. Data were subsequently subjected to orthogonal partial least squares discriminant analysis. The data clearly show that changes of certain lipids are induced by the specially processed cereal feed. Scores plots show a well-defined separation between the two groups. The corresponding loading plots reveal that the groups separate mainly due to changes of vitamin E, phosphocholine, and phosphosphingolipid fragments, and that for the c18:2 fatty acid. The observed changes in lipids might give insight into the working mechanisms of antisecretory factor in the body, and this has been successfully used to understand the working mechanism of specially processed cereal-induced antisecretory factor activation in intestine. PMID:26753787

  11. Characterisation of dietary fibre components in cereals and legumes used in Serbian diet.

    Dodevska, Margarita S; Djordjevic, Brizita I; Sobajic, Sladjana S; Miletic, Ivanka D; Djordjevic, Predrag B; Dimitrijevic-Sreckovic, Vesna S

    2013-12-01

    The typical Serbian diet is characterised by high intake of cereal products and also legumes are often used. The content of total fibre as well as certain fibre fractions was determined in cereals, cereal products, and cooked legumes. The content of total fibre in cooked cereals and cereal products ranged from 2.5 to 20.8 g/100 g, and in cooked legumes from 14.0 to 24.5 g/100 g (on dry matter basis). Distribution of analysed fibre fractions and their quantities differed significantly depending on food groups. Fructans and arabinoxylans were the most significant fibre fractions in rye flakes, and β-glucan in oat flakes, cellulose and resistant starch were present in significant amounts in peas and kidney beans. When the size of regular food portions was taken into consideration, the best sources of total dietary fibre were peas and kidney beans (more than 11 g/serving). The same foods were the best sources of cellulose (4.98 and 3.56 g/serving) and resistant starch (3.90 and 2.83 g/serving). High intake of arabinoxylans and fructans could be accomplished with cooked wheat (3.20 g and 1.60 g/serving, respectively). Oat (1.39 g/serving) and barley flakes (1.30 g/serving) can be recommended as the best sources of β-glucan. PMID:23870869

  12. THE SUPPLEMENTARY RELATIONS BETWEEN THE PROTEINS OF MOTTLED GRAM BEAN AND CERTAIN OTHER CEREALS

    罗登义

    2006-01-01

    @@ It has been well understood that a mixture of vegetable and animal proteins is of higher quality than the former alone, and also there are some remarkable instances of effective supplementing between the proteins of certain cereals and certain legume seeds[1]. In practice, it is very valuable for the selection of human diets and farm-animal relations. This question is especially important in China where the protein of the average diet are mainly of vegetable origin, in which about 83 percent are derived from cereals and 11 percent from beans[2]. However, a review of the literature indicates that no work has been done on the supplementary relationships of the protein of mottled gram bean with those of other cereals. The writer purchased, therefore, from the Peiping market some cheaper cereals commonly used in China, namely, yellow corn(黄玉米), red kaoliang(红高粱),oat meal(油麦面),panicled glutinous and non-glutinous millets(黄米及糜子米); and determined the supplementary values between the proteins of mottled gram bean and these cereals. The experimental details are communicated in the present paper.

  13. Macro-Elements and Trace Elements in Cereal Grains Cultivated in Latvia

    Jākobsone Ida

    2015-09-01

    Full Text Available Cereal-based foods have great importance in the compensation of micro- and trace element deficiency, because 50% of the foods produced worldwide are made up of cereal grains. The aim of the research was to determine the concentration of macro-elements and trace elements in different cereals cultivated in Latvia. Various cereals were used in the research: rye (n = 45, barley (n = 54, spring wheat (n = 27, winter wheat (n = 53, triticale (n = 45 and oats (n = 42. Thirteen macro- and trace elements (Cd, Pb, Ni, Cr, Al, Cu, K, Na, Mn, Fe, Zn, Mg, Ca were determined in cereal grain samples (n = 266. Macro-elements and trace elements varied significantly (p < 0.01 or p < 0.001. The highest concentrations of macro- and trace elements were found in oats and the lowest in rye. The obtained data will expand the opportunity for food and nutrition scientists to evaluate content of the examined elements in grain products, and dietary consumption (bioavailability of the examined macro-elements and trace elements.

  14. Proteinaceous inhibitors of carbohydrate-active enzymes in cereals - implication in agriculture, cereal-processing and nutrition

    Juge, Nathalie; Svensson, Birte

    2006-01-01

    Enzymes that degrade, modify, or create glycosidic bonds are involved in carbohydrate biosynthesis and remodelling. Microbial carbohydrate-active enzymes form the basis of current green technology in the food, feed, starch, paper and pulp industries and the revolution in genomics may offer long...

  15. Seed protein improvement in cereals and grain legumes

    Full text: This Symposium organized in co-operation with the Gesellschaft fur Strahlen- und Umweltforschung mbH (GSF), Neuherberg near Munich, Federal Republic of Germany, was the culmination of the eight year FAO/IAEA/GSF Co-ordinated Research Programme to Improve Protein Content and Quality of Crops by Nuclear Techniques The co-ordinated research programme has stimulated plant breeding in developing countries, assisted in the development of techniques for the identification and evaluation of nutritionally improved mutants and encouraged basic research on seed storage proteins. The Symposium comprised 90 scientific presentations plus equipment displays. Sixty-one scientific papers were orally presented and discussed in eight sessions. An additional 29 scientific contributions were presented as posters and were on display throughout the Symposium. One afternoon of the Symposium was devoted to examination and individual discussion of the poster displays. It was especially notable that this method of presentation and discussion of scientific results was very favourably received. Five items of scientific equipment demonstrated analytical systems in use for protein or amino acid assay in plant breeding programmes. The Symposium clearly demonstrated the reality of nutritional deficiencies in poor countries and outlined plant breeding strategies for overcoming these. Progress was reported in improving the nutritional quality of cereals (wheat, maize, rice, barley, sorghum, millet, triticale, oats), legumes (beans, peas, soybeans, field beans, chick peas, lentils, pigeon peas, cowpeas, grams, peanuts) and some other crops (cotton, buckwheat). Notable results have been achieved, but much of the work has been in progress less than 10 years, which is too short a time for the development, testing and release of commercial varieties. Chemical and nutritional assay methods, including some promising new methods were reviewed and assessed. Rapid developments in knowledge of the

  16. An Ultrasonic System for Weed Detection in Cereal Crops

    Dionisio Andújar

    2012-12-01

    Full Text Available Site-specific weed management requires sensing of the actual weed infestation levels in agricultural fields to adapt the management accordingly. However, sophisticated sensor systems are not yet in wider practical use, since they are not easily available for the farmers and their handling as well as the management practice requires additional efforts. A new sensor-based weed detection method is presented in this paper and its applicability to cereal crops is evaluated. An ultrasonic distance sensor for the determination of plant heights was used for weed detection. It was hypothesised that the weed infested zones have a higher amount of biomass than non-infested areas and that this can be determined by plant height measurements. Ultrasonic distance measurements were taken in a winter wheat field infested by grass weeds and broad-leaved weeds. A total of 80 and 40 circular-shaped samples of different weed densities and compositions were assessed at two different dates. The sensor was pointed directly to the ground for height determination. In the following, weeds were counted and then removed from the sample locations. Grass weeds and broad-leaved weeds were separately removed. Differences between weed infested and weed-free measurements were determined. Dry-matter of weeds and crop was assessed and evaluated together with the sensor measurements. RGB images were taken prior and after weed removal to determine the coverage percentages of weeds and crop per sampling point. Image processing steps included EGI (excess green index computation and thresholding to separate plants and background. The relationship between ultrasonic readings and the corresponding coverage of the crop and weeds were assessed using multiple regression analysis. Results revealed a height difference between infested and non-infested sample locations. Density and biomass of weeds present in the sample influenced the ultrasonic readings. The possibilities of weed group

  17. Cereal crop resistance to insects in the United States. An example of induced mutation

    In the United States, entomologists and plant scientists are cooperating in the production of varieties of cereal crops (corn, wheat, and sorghum) that have commercially effective resistance to key pests. Active research is in progress on plant resistance to the European corn borer, southwestern corn borer, corn earworm, corn rootworms, greenbug, sorghum midge, Hessian fly, and cereal leaf beetle. Plant resistance has had an important role in reducing the chinch bug and the wheat stem sawfly to minor pests. There are deficiencies of programs in the U.S. For example, collections of cereal crop germplasm are large, and most have not been adequately evaluated. Induced mutation research could be highly useful for specific objectives. The transfer of greenbug resistance from rye to wheat is an example. (author)

  18. Effect of primary processing of cereals and legumes on its nutritional quality: A comprehensive review

    Morteza Oghbaei

    2016-12-01

    Full Text Available Cereals and legumes are important part of dietaries and contribute substantially to nutrient intake of human beings. They are significant source of energy, protein, dietary fiber, vitamins, minerals, and phytochemicals. Primary processing of cereals and legumes is an essential component of their preparation before use. For some grains, dehusking is an essential step, whereas for others, it could be milling the grain into flour. Grains are subjected to certain processing treatments to impart special characteristics and improve organoleptic properties such as expanded cereals. All these treatments result in alteration of their nutritional quality which could either be reduction in nutrients, phytochemicals and antinutrients or an improvement in digestibility or availability of nutrients. It is important to understand these changes occurring in grain nutritional quality on account of pre-processing treatments to select appropriate techniques to obtain maximum nutritional and health benefits. This review attempts to throw light on nutritional alterations occurring in grains due to pre-processing treatments.

  19. Cereal grains' resistance analysis in the aspect of energy utilisation in the process of disintegration

    Melcion J.-P.

    1998-09-01

    Full Text Available The highly non-descriptive character of biological materials resulting from their non-standard shapes and their mechanically heterogeneous structure in particular, underlies the lack of any detailed estimation of the raw materials' physicochemical qualities' influence on the course of disintegration process. Hence, it seems that the qualities expressing the relations arising during mechanical loads (mechanical and rheological properties are especially significant. In individual tests an attempt was made for a detailed description of cereal grains' resistance parameters. These properties were defined in the single-particle compression test. Test were carried out for rye and barley grains of varying humidity (10-18%. Tests concerning the process of cereal disintegration were carried out on the stand equipped with a laboratory hammer mill. The measurements showed significant relationships between the kind of cereal, its resistance characteristics and the energy utilisation in the process of disintegration. Results of the tests and the relations were described by means of regressive equations.

  20. Spatiotemporal Dynamics of Oligofructan Metabolism and Suggested Functions in Developing Cereal Grains

    Manuela ePeukert

    2016-01-01

    Full Text Available Oligofructans represent one of the most important groups of sucrose-derived water–soluble carbohydrates in the plant kingdom. In cereals, oligofructans accumulate in above ground parts of the plants (stems, leaves, seeds and their biosynthesis leads to the formation of both types of glycosidic linkages (ß(2,1; ß(2,6-fructans or mixed patterns. In recent studies, tissue- and development- specific distribution patterns of the various oligofructan types in cereal grains have been shown, which are possibly related to the different phases of grain development, such as cellular differentiation of grain tissues and storage product accumulation. Here, we summarize the current knowledge about oligofructan biosynthesis and accumulation kinetics in cereal grains. We focus on the spatiotemporal dynamics and regulation of oligofructan biosynthesis and accumulation in developing barley grains (deduced from a combination of metabolite, transcript and proteome analyses. Finally, putative physiological functions of oligofructans in developing grains are discussed.

  1. Archaeobotanical study of ancient food and cereal remains at the Astana Cemeteries, Xinjiang, China.

    Tao Chen

    Full Text Available Starch grain, phytolith and cereal bran fragments were analyzed in order to identify the food remains including cakes, dumplings, as well as porridge unearthed at the Astana Cemeteries in Turpan of Xinjiang, China. The results suggest that the cakes were made from Triticum aestivum while the dumplings were made from Triticum aestivum, along with Setaria italica. The ingredients of the porridge remains emanated from Panicum miliaceum. Moreover, direct macrobotantical evidence of the utilization of six cereal crops, such as Triticum aestivum, Hordeum vulgare var. coeleste, Panicum miliaceum, Setaria italica, Cannabis sativa, and Oryza sativa in the Turpan region during the Jin and Tang dynasties (about 3(rd to 9(th centuries is also presented. All of these cereal crops not only provided food for the survival of the indigenous people, but also spiced up their daily life.

  2. Effect of temperature and precipitation on nitrate leaching from organic cereal cropping systems in Denmark

    Jabloun, Mohamed; Schelde, Kirsten; Tao, F;

    2015-01-01

    The effect of variation in seasonal temperature and precipitation on soil water nitrate (NO3single bondN) concentration and leaching from winter and spring cereals cropping systems was investigated over three consecutive four-year crop rotation cycles from 1997 to 2008 in an organic farming crop...... rotation experiment in Denmark. Three experimental sites, varying in climate and soil type from coarse sand to sandy loam, were investigated. The experiment included experimental treatments with different rotations, manure rate and cover crop, and soil nitrate concentrations was monitored using suction......N concentration for winter and spring cereals, respectively, and 68% and 77% of the variation in the square root transform of annual NO3single bondN leaching for winter and spring cereals, respectively. Nitrate concentration and leaching were shown to be site specific and driven by climatic factors and crop...

  3. Potential of phytase-mediated iron release from cereal-based foods: a quantitative view

    Nielsen, Anne Veller Friis; Tetens, Inge; Meyer, Anne S.

    2013-01-01

    to naturally release iron from iron phytate complexes. This narrative review will evaluate the quantitative significance of phytase-catalysed iron release from cereal foods. In vivo studies have shown how addition of microbially derived phytases to cereal-based foods has produced increased iron absorption via......The major part of iron present in plant foods such as cereals is largely unavailable for direct absorption in humans due to complexation with the negatively charged phosphate groups of phytate (myo-inositol (1,2,3,4,5,6)-hexakisphosphate). Human biology has not evolved an efficient mechanism...... phytate complexes, and (3) the extent of phytate dephosphorylation required for iron release from inositol phosphates is warranted. Phytase-mediated iron release can improve iron absorption from plant foods. There is a need for development of innovative strategies to obtain better effects....

  4. High resolution melting analysis as a new approach to discriminate gluten-containing cereals.

    Martín-Fernández, Begoña; Costa, Joana; de-Los-Santos-Álvarez, Noemí; López-Ruiz, Beatriz; Oliveira, M Beatriz P P; Mafra, Isabel

    2016-11-15

    With this work, it is intended to propose a novel approach based on high resolution melting (HRM) analysis to detect wheat and discriminate it from other gluten-containing cereals. The method consisted of a real-time PCR assay targeting the gene encoding for the germ agglutinin isolectin A protein (Tri a 18 allergen), using the fluorescent Evagreen dye combined with HRM analysis. The results enabled wheat differentiation from other phylogenetically related cereals, namely barley, rye and oat with high level of confidence. Additionally, a quantitative real-time PCR approach was proposed, allowing detecting and quantifying wheat down to 20mg/kg in rice flour and 20pg of wheat DNA (∼1.1 DNA copies). Its application was successfully achieved in the analysis of processed foods to verify labelling compliance, being considered as a cost-effective tool for the specific detection of cereals in gluten-free foods. PMID:27283646

  5. Barriers and incentives to the production of bioethanol from cereal straw: A farm business perspective

    The EU renewable energy directive stipulates a requirement for 10% of transport fuels to be derived from renewable sources by 2020. Second generation biofuels offer potential to contribute towards this target with cereal straw representing a potentially large feedstock source. From an on-farm survey of 240 arable farmers, timeliness of crop establishment and benefits of nutrient retention from straw incorporation were cited as reasons for straw incorporation. However, two-thirds (one-third) of farmers would supply wheat (barley) straw for bioenergy. The most popular contract length and continuous length of straw supply was either 1 or 3 years. Contracts stipulating a fixed area of straw supply for a fixed price were the most frequently cited preferences, with £50 t−1 the most frequently cited minimum contract price that farmers would find acceptable. Arable farmers in England would be willing to sell 2.52 Mt of cereal straw for bioenergy purposes nationally and 1.65 Mt in the main cereal growing areas of Eastern England. Cereal straw would be diverted from current markets or on-farm uses and from straw currently incorporated into soil. Policy interventions may be required to incentivise farmers to engage in this market, but food and fuel policies must increasingly be integrated to meet societal goals. - Highlights: • English arable farmer survey to determine potential supply for straw based biofuel. • Two-thirds of farmers would supply wheat straw for bioenergy. • Farmers willing to sell 1.65 Mt of cereal straw from the main cereal producing regions. • Farmer preference for a fixed area of straw supply for a contracted fixed price. • £50 t−1 the most frequently cited minimum contract price farmers find acceptable

  6. High levels of nucleotide diversity and fast decline of linkage disequilibrium in rye (Secale cereale L. genes involved in frost response

    Korzun Viktor

    2011-01-01

    Full Text Available Abstract Background Rye (Secale cereale L. is the most frost tolerant cereal species. As an outcrossing species, rye exhibits high levels of intraspecific diversity, which makes it well-suited for allele mining in genes involved in the frost responsive network. For investigating genetic diversity and the extent of linkage disequilibrium (LD we analyzed eleven candidate genes and 37 microsatellite markers in 201 lines from five Eastern and Middle European rye populations. Results A total of 147 single nucleotide polymorphisms (SNPs and nine insertion-deletion polymorphisms were found within 7,639 bp of DNA sequence from eleven candidate genes, resulting in an average SNP frequency of 1 SNP/52 bp. Nucleotide and haplotype diversity of candidate genes were high with average values π = 5.6 × 10-3 and Hd = 0.59, respectively. According to an analysis of molecular variance (AMOVA, most of the genetic variation was found between individuals within populations. Haplotype frequencies varied markedly between the candidate genes. ScCbf14, ScVrn1, and ScDhn1 were dominated by a single haplotype, while the other 8 genes (ScCbf2, ScCbf6, ScCbf9b, ScCbf11, ScCbf12, ScCbf15, ScIce2, and ScDhn3 had a more balanced haplotype frequency distribution. Intra-genic LD decayed rapidly, within approximately 520 bp on average. Genome-wide LD based on microsatellites was low. Conclusions The Middle European population did not differ substantially from the four Eastern European populations in terms of haplotype frequencies or in the level of nucleotide diversity. The low LD in rye compared to self-pollinating species promises a high resolution in genome-wide association mapping. SNPs discovered in the promoters or coding regions, which attribute to non-synonymous substitutions, are suitable candidates for association mapping.

  7. BGD: A Database of Bat Genomes

    Jianfei Fang; Xuan Wang; Shuo Mu; Shuyi Zhang; Dong Dong

    2015-01-01

    Bats account for ~20% of mammalian species, and are the only mammals with true powered flight. For the sake of their specialized phenotypic traits, many researches have been devoted to examine the evolution of bats. Until now, some whole genome sequences of bats have been assembled and annotated, however, a uniform resource for the annotated bat genomes is still unavailable. To make the extensive data associated with the bat genomes accessible to the general biological communities, we establi...

  8. Physicochemical properties and nutritional quality of raw cereals for newly weaned piglets.

    White, G A; Doucet, F J; Hill, S E; Wiseman, J

    2008-06-01

    The digestibility of the starch component of raw cereals in newly weaned piglets is highly variable. Reasons for this must be elucidated if the most suitable cereals are to be used. A novel approach was employed, which consisted of assessing the physicochemical properties (rapid visco analysis, water absorption and solubility indices, particle size distribution and in vitro amylolytic digestion) of eight raw cereals contained within piglet diets and subsequently relating this in vitro data to the biological responses of weaned piglets. Trial 1 examined soft and hard wheat, trial 2 - soft wheat, barley, rye and triticale, and trial 3 - soft wheat, naked oats, whole oats and maize. The initial observation was that in vitro testing prior to animal trials is recommended in nutritional evaluation since it indicated fundamental differences between raw cereals, such as for example the levels of endogenous amylase in wheat. Starch and nitrogen digestibility differed between cereals (apparent digestibility coefficients at the 0.5 site of the small intestine ranged from 0.10 to 0.69 for starch and from 0.17 to 0.68 for nitrogen). There is also a probable relationship between the coefficients of ileal apparent starch digestibility, at approximately halfway from the gastric pylorus to the ileocaecal valve, and the presence of endogenous amylase (mean values of 0.53 and 0.62 in trials 2 and 3, respectively, for the higher amylase wheat; 0.38 for the low-amylase wheat used in trial 1). This additional variable (i.e. the unforeseen presence of endogenous amylase) in wheat made it more difficult to draw a firm conclusion about the nutritional suitability of the different cereals. All raw-cereal diets caused atrophy of the villi during the initial week following weaning, but the soft wheat was associated with the highest comparative villi height and might therefore be considered the best of all raw cereals in minimising the post-weaning growth check. For wheat, this might also

  9. Cereal Dietary Fibre - Physicochemical Properties and Suitability for Addition to Low-Fat Meat Products

    Petersson, Karin

    2012-01-01

    It is well known that dietary fibre is good for the health. Cereals, and in particular the outer parts of the cereal kernels, are rich in dietary fibre. Rye bran, wheat bran, oat bran and barley fibre have been investigated regarding their suitability as additives in low-fat meat products. Two types of meat products, frankfurter-type sausages and meatballs have been evaluated in this thesis. In the sausages the meat protein network governs the texture and water-holding properties, whereas the...

  10. Aspects of the selection, design and use of high lysine cereals

    A discussion of the need for and the considerations involved in the breeding of high lysine cereals is presented. Progress in the discovery and exploitation of genotypes with high lysine characters in maize and barley are briefly reviewed. The role and some of the characteristics of the dye-binding capacity (DBC) methods are evaluated along with the ways in which DBC results should be used in combination with other information. Lastly, the changes in attitudes and procedures associated with the acceptance of a product of a new technology such as nutritionally improved cereals is discussed. (author)

  11. Organic dairy production based on rapeseed, rapeseed cake or cereals as supplement to silage ad libitum

    Mogensen, Lisbeth; Ingvartsen, Klaus L; Kristensen, Troels; Seested, Susanne; Thamsborg, Stig M.

    2004-01-01

    This experiment presents the effect of 100% organic feed rations grown at an equal area per cow on milk production performance and metabolic responses. A total of 174 Danish Holstein cows were included in two experiments on two commercial organic dairy farms during the winter 2000/2001. Three types of supplementary feed were examined: 5 kg cereals, 3 kg rapeseed/cereal pellet or 1 kg rapeseed cake fed with a mixture of clover grass silage, whole crop silage and grass pellets ad libitum. The s...

  12. Development of cereal and legume based food products for the elderly

    Satusap, Pruet; Chavasit, Visith; Kriengsinyos, Wantanee; Judprasong, Kunchit

    2014-01-01

    Diets for elderly must contain nutritious foods, fit their physiological limitations, and match with their food culture. Cereals and legumes are suggested food choices regardless of their cultures and beliefs. Ready-to-eat products containing suitable macronutrient patterns from cereals and legumes were developed. Energy distributions from carbohydrate (60 kcal/100 kcal), protein (15 kcal/100 kcal), and fat (25 kcal/100 kcal), protein quality, and percent energy from saturated fatty acid and ...

  13. Resistant starch content of conventionally boiled and pressure-cooked cereals, legumes and tubers

    Yadav, B. S.; Sharma, A.; Yadav, R. B.

    2010-01-01

    Resistant starch (RS) content was determined in the conventionally boiled (H1) and pressure-cooked (H2) cereals, legumes and tubers using enzymatic method. Both H1 and H2 legumes contained higher amount of RS as compared to cereals and tubers. H1 and H2 lentils showed highest RS content of 5.0 and 4.9% (dwb), respectively. Higher RS content in legumes can be attributed to the presence of intact tissue/cell structures enclosing starch granules and high level of amylose (26–33%) and high conten...

  14. Genetic Engineering of Cereal Grains with Starch Consisting of More Than 99% Amylase

    Hebelstrup, Kim; Carciofi, Massimiliano; Blennow, Andreas

    2013-01-01

    Numerous textbooks tell us that plant starches are a mix of two starch types: amylopectin and amylose. We recently succeeded in engineering a cereal crop – a barley line – producing grain starch consisting of more than 99% amylose1. This amylose-only starch contains a high residual fraction that is...... resistant to enzymatic degradation, even when gelatinized by cooking. The barley plants producing the grains had a moderate yield loss of 25% in comparison with other barley plants of the same cultivar. We believe that the method can be applied to produce amylose-only starch in other cereal crops including...... wheat and corn...

  15. The Dietary Intake of Wheat and other Cereal Grains and Their Role in Inflammation

    Karin de Punder; Leo Pruimboom

    2013-01-01

    Wheat is one of the most consumed cereal grains worldwide and makes up a substantial part of the human diet. Although government-supported dietary guidelines in Europe and the U.S.A advise individuals to eat adequate amounts of (whole) grain products per day, cereal grains contain “anti-nutrients,” such as wheat gluten and wheat lectin, that in humans can elicit dysfunction and disease. In this review we discuss evidence from in vitro, in vivo and human intervention studies that describe how ...

  16. A Study on the Stability of Deoxynivalenol during the Production of Selected Flour-Based Foods and Wheat Flake Cereal

    Deoxynivalenol (DON) is a mycotoxin that is commonly found in cereals and cereal-based products. Some processing methods reduce its concentrations in the finished products whereas others do not. The concentrations of DON in flour, wheat and a selection of food products prepared from them using co...

  17. Analysing complex Triticeae genomes – concepts and strategies

    Spannagl, Manuel; Martis, Mihaela M.; Pfeifer, Matthias; Nussbaumer, Thomas; Mayer, Klaus FX

    2013-01-01

    The genomic sequences of many important Triticeae crop species are hard to assemble and analyse due to their large genome sizes, (in part) polyploid genomes and high repeat content. Recently, the draft genomes of barley and bread wheat were reported thanks to cost-efficient and fast NGS technologies. The genome of barley is estimated to be 5 Gb in size whereas the genome of bread wheat accounts for 17 Gb and harbours an allo-hexaploid genome. Direct assembly of the sequence reads and access t...

  18. Cancer Genome Anatomy Project | Office of Cancer Genomics

    The National Cancer Institute (NCI) Cancer Genome Anatomy Project (CGAP) is an online resource designed to provide the research community access to biological tissue characterization data. Request a free copy of the CGAP Website Virtual Tour CD from ocg@mail.nih.gov.

  19. Cancer Genome Anatomy Project (CGAP) | Office of Cancer Genomics

    CGAP generated a wide range of genomics data on cancerous cells that are accessible through easy-to-use online tools. Researchers, educators, and students can find "in silico" answers to biological questions through the CGAP website. Request a free copy of the CGAP Website Virtual Tour CD from ocg@mail.nih.gov to learn how to navigate the website.

  20. ESTUDIO COMPARATIVO DE CARACTERÍSTICAS FÍSICOQUÍMICAS DE CEREALES KELLOGG'S COMPARATIVE STUDY OF CHEMISTRY AND PHYSICS CHARACTERISTICS OF KELLOGG'S CEREALS

    Judith Prieto M

    2005-04-01

    Full Text Available Se realizó un estudio comparativo de las características físicoquímicas de tres variedades de cereales Kellogg's para desayuno, hojuelas de arroz (Special K, hojuelas de maíz (Zucaritas y hojuelas de trigo (All Brand, y se compararon con las especificaciones dadas por el fabricante. Se constató que existen pequeñas diferencias que pueden ser debidas al tiempo transcurrido desde su elaboración. Se estudió por técnicas de difracción de rayos Lasser la distribución y tamaños de las partículas en suspención de estos cereales, correspondientes a los gránulos de almidón y partículas de grasas, denotándose una diferencia entre las variedades. Esto puede resultar efectivo para estudios posteriores por técnicas de análisis térmico, que permitan predecir de forma rápida y dinámica, tiempos de vida de estos productos y fechas de caducidadA comparative study of physic and chemical characteristics of three varieties of Kellogg's cereals for breakfast, of rice (Special K, maize (Zucaritas and wheat (All Brand was made, and compared with the specifications given by the manufacturer. It was stated that small differences exist that can be due to the time passed from their elaboration. It was possible to be studied by techniques of diffraction Lasser ray the distribution and sizes of particles in suspension of these cereals, corresponding to grains of starch and fat particles, denoting itself a difference between the varieties. These, can be effective for later studies by techniques of thermal analysis, that allow to predict of fast and dynamic form, times of life of these products and dates of lapsing

  1. Fungal genome resources at NCBI.

    Robbertse, B; Tatusova, T

    2011-09-01

    The National Center for Biotechnology Information (NCBI) is well known for the nucleotide sequence archive, GenBank and sequence analysis tool BLAST. However, NCBI integrates many types of biomolecular data from variety of sources and makes it available to the scientific community as interactive web resources as well as organized releases of bulk data. These tools are available to explore and compare fungal genomes. Searching all databases with Fungi [organism] at http://www.ncbi.nlm.nih.gov/ is the quickest way to find resources of interest with fungal entries. Some tools though are resources specific and can be indirectly accessed from a particular database in the Entrez system. These include graphical viewers and comparative analysis tools such as TaxPlot, TaxMap and UniGene DDD (found via UniGene Homepage). Gene and BioProject pages also serve as portals to external data such as community annotation websites, BioGrid and UniProt. There are many different ways of accessing genomic data at NCBI. Depending on the focus and goal of research projects or the level of interest, a user would select a particular route for accessing genomic databases and resources. This review article describes methods of accessing fungal genome data and provides examples that illustrate the use of analysis tools. PMID:22737589

  2. The genome of the mesopolyploid crop species Brassica rapa

    Wang, Xiaowu; Wang, Hanzhong; Sun, Rifei; Bonnema, A.B.

    2011-01-01

    We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the con

  3. When Is Open Access Not Open Access?

    MacCallum, Catriona J.

    2007-01-01

    As open access grows in prominence, so too has confusion about what open access means; such confusion arises from a genuine misunderstanding of open access by funders, authors, editors, and publishers alike.

  4. GENOMIC MEDICINE

    Ignacio Briceño Balcázar

    2011-03-01

    Full Text Available Until the twilight of the 20th century, genetics was a branch of medicine applied to diseases of rare occurrence. The advent of the human genome sequence and the possibility of studying it at affordable costs for patients and healthcare institutions, has permitted its application in high-priority diseases like cancer, cardiovascular disease, diabetes, and Alzheimer’s, among others.There is great potential in predictive and preventive medicine, through studying polymorphic genetic variants associated to risks for different diseases. Currently, clinical laboratories offer studies of over 30,000 variants associated with susceptibilities, to which individuals can access without much difficulty because a medical prescription is not required. These exams permit conducting a specific plan of preventive medicine. For example, upon the possibility of finding a deleterious mutation in the BRCA1 and BRCA2 genes, the patient can prevent the breast cancer by mastectomy or chemoprophylaxis and in the presence of polymorphisms associated to cardiovascular risk preventive action may be undertaken through changes in life style (diet, exercise, etc..Legal aspects are also present in this new conception of medicine. For example, currently there is legislation for medications to indicate on their labels the different responses such medication can offer regarding the genetic variants of the patients, given that similar doses may provoke adverse reactions in an individual, while for another such dosage may be insufficient. This scenario would allow verifying the polymorphisms of drug response prior to administering medications like anticoagulants, hyperlipidemia treatments, or chemotherapy, among others.We must specially mention recessive diseases, produced by the presence of two alleles of a mutated gene, which are inherited from the mother, as well as the father. By studying the mutations, we may learn if a couple is at risk of bearing children with the disease

  5. Genomic Medicine

    Ignacio Briceño Balcázar

    2011-04-01

    Full Text Available Until the twilight of the 20th century, genetics was a branch of medicine applied to diseases of rare occurrence.  The advent of the human genome sequence and the possibility of studying it at affordable costs for patients and healthcare institutions, has permitted its application in high-priority diseases like cancer, cardiovascular disease, diabetes, and Alzheimer’s, among others. There is great potential in predictive and preventive medicine, through studying polymorphic genetic variants associated to risks for different diseases. Currently, clinical laboratories offer studies of over 30,000 variants associated with susceptibilities, to which individuals can access without much difficulty because a medical prescription is not required. These exams permit conducting a specific plan of preventive medicine.  For example, upon the possibility of finding a deleterious mutation in the BRCA1 and BRCA2 genes, the patient can prevent the breast cancer by mastectomy or chemoprophylaxis and in the presence of polymorphisms associated to cardiovascular risk preventive action may be undertaken through changes in life style (diet, exercise, etc.. Legal aspects are also present in this new conception of medicine.  For example, currently there is legislation for medications to indicate on their labels the different responses such medication can offer regarding the genetic variants of the patients, given that similar doses may provoke adverse reactions in an individual, while for another such dosage may be insufficient. This scenario would allow verifying the polymorphisms of drug response prior to administering medications like anticoagulants, hyperlipidemia treatments, or chemotherapy, among others. We must specially mention recessive diseases, produced by the presence of two alleles of a mutated gene, which are inherited from the mother, as well as the father. By studying the mutations, we may learn if a couple is at risk of bearing children with the

  6. The Effect of Plant Proteins Derived from Cereals and Legumes on Heme Iron Absorption

    Valerie Weinborn

    2015-10-01

    Full Text Available The aim of this study is to determine the effect of proteins from cereals and legumes on heme iron (Fe absorption. The absorption of heme Fe without its native globin was measured. Thirty adult females participated in two experimental studies (15 per study. Study I focused on the effects of cereal proteins (zein, gliadin and glutelin and study II on the effects of legume proteins (soy, pea and lentil on heme Fe absorption. When heme was given alone (as a control, study I and II yielded 6.2% and 11.0% heme absorption (p > 0.05. In study I, heme Fe absorption was 7.2%, 7.5% and 5.9% when zein, gliadin and glutelin were added, respectively. From this, it was concluded that cereal proteins did not affect heme Fe absorption. In study II, heme Fe absorption was 7.3%, 8.1% and 9.1% with the addition of soy, pea and lentil proteins, respectively. Only soy proteins decreased heme Fe absorption (p < 0.05. These results suggest that with the exception of soy proteins, which decreased absorption, proteins derived from cereals and legumes do not affect heme Fe absorption.

  7. Cereal bar with added chayote peel flour: physico-chemical and sensory characteristics among children

    Tatiane Wendler de Cristo

    2015-12-01

    Full Text Available The study aimed to verify the sensory acceptability of traditional cereal bars and cereal bars added with chayote peel flour, and determine the physico-chemical compositions of their formulations. Five cereal bars formulas were prepared and analyzed as follows: F1: standard (0% and with the addition of chayote peel flour in the proportions of 6.75% (F2; 13.5% (F3; 20.25% (F4 and 27% (F5. Sixty tasters, aged 7-10 took part in the sensorial analysis. There was no significant difference (p> 0.05 regarding appearance, aroma, texture and color among formulations. For the attributes taste, overall acceptance and purchase intention, higher scores were given towards the standard sample when compared to F5, but no differences were observed among the other sample scores. There was no statistical difference (p>0.05 for moisture, protein, fat and calories between F1 and F4 formulations. However, higher levels of ash and dietary fiber and lower level of carbohydrates were observed in F4 compared to F1. The formulas preparation demonstrated that a level of addition of up to 20.25% of chayote peel flour in cereal bars was well accepted by the panel, with a sensory acceptance similar to the standard product and good trading expectation.

  8. Perspectives for geographically oriented management of fusarium mycotoxins in the cereal supply chain

    Fels-Klerx, van der H.J.; Booij, C.J.H.

    2010-01-01

    This article provides an overview of available systems for management of Fusarium mycotoxins in the cereal grain supply chain, with an emphasis on the use of predictive mathematical modeling. From the state of the art, it proposes future developments in modeling and management and their challenges.

  9. Breakfast Eating Pattern and Ready-to-Eat Cereals Consumption among Schoolchildren in Kuala Lumpur

    KOO, Hui-Chin; ABDUL JALIL, Siti Nurain; Ruzita, ABD TALIB

    2015-01-01

    Background: Studies from the West have demonstrated that ready-to-eat cereals (RTECs) are a common form of breakfast and more likely to be consumed by children. This study aimed to investigate the breakfast eating pattern and RTECs consumption among schoolchildren in Kuala Lumpur.

  10. Meloidogyne Incognita Host Suitability and Benzoxazinoid Content of Rye (secale cereale) Cultivars

    This research was conducted to investigate factors which may aid in the selection of a rye cultivar for plant-parasitic nematode management. Six geographically diverse cultivars of rye (Secale cereale) wheat (Triticum aestivum) and hairy vetch (Vicia villosa), were screened for Meloidogyne incognit...

  11. Innovaciones Tecnológicas y Tendencias de Desarrollo en las cosechadoras de Cereales

    Moya Gonzalez, Adolfo; Valero Ubierna, Constantino

    2012-01-01

    Revisamos en este artículo los temas en los que ingenieros y científicos están trabajando para aportar innovaciones a la cosecha de cereal. Además se revisa el mercado español y las últimas novedades comerciales presentadas por los fabricantes.

  12. Voluntary fortification of breakfast cereals with folic acid: contribution to dietary intake in Australia.

    Japar, Devina; Chandra-Hioe, Maria V; Shrestha, Ashok; Arcot, Jayashree

    2016-05-01

    Ready-to-eat breakfast cereals have been voluntarily fortified with folic acid since 1995, with the purpose of reducing the prevalence of neural tube defects in utero. Using data from the recent Australian Health Survey, this study aimed to estimate folate intake from one serving of breakfast cereals (median amount). Various commercial brands were purchased in 2002 (n = 19) and in 2014 (n = 14); folate was determined by microbiological assay and high-pressure liquid chromatography (HPLC). Total folate (μg/100 g) in 2002 and 2014 selections were 144-633 and 147-564, respectively, and mostly comparable to nutrition labels. Folic acid (2014 selection) using HPLC, ranged from 85 to 411 μg/100 g. Intake of 51 g cereals/serving by individuals ≥2 years could contribute 75-288 μg dietary folate equivalent. It seems that folic acid intake among children (2-3 years) exceeds the recommended dietary intake, when certain brands of breakfast cereals are consumed. Accordingly, the benefits and potential detrimental effects of the voluntary fortification need to be further explored. PMID:26903206

  13. Estimation of leaf area index in cereal crops using red-green images

    Kirk, Kristian; Andersen, Hans Jørgen; Thomsen, Anton G;

    2009-01-01

    A new method for estimating the leaf area index (LAI) in cereal crops based on red-green images taken from above the crop canopy is introduced. The proposed method labels pixels into vegetation and soil classes using a combination of greenness and intensity derived from the red and green colour...

  14. Estimation of leaf area index in cereal crops using red–green images

    Nielsen, Kristian Kirk; Andersen, Hans Jørgen; Thomsen, Anton;

    2009-01-01

    A new method for estimating the leaf area index (LAI) in cereal crops based on red–green images taken from above the crop canopy is introduced. The proposed method labels pixels into vegetation and soil classes using a combination of greenness and intensity derived from the red and green colour...

  15. Legume N2 fixation - An efficient source of nitrogen for cereal production

    Nitrogen deficiency is a major factor limiting yields of cereals. With wheat, the most commonly-grown cereal in rain-fed agriculture, the soil must supply 30-40 kg N/ha in a plant-available form (usually as nitrate) for each tonne of grain produced. In some of the developed countries and energy-rich LDC's, N is supplied in sufficient amounts as fertilizers. In the majority of countries, however, this is not possible principally because of the high cost. Research has shown that the soil following an annual crop legume often contains 30-60 kg N/ha more than after a cereal crop and that this increased plant-available N is converted into increased cereal grain yield. The N benefits are due to the legume's capacity to fix atmospheric N2. Amounts fixed by the annual crop legumes range from zero to more than 400 kg/ha. There is, however, scope to manage legume N2 fixation for maximum benefit, through practices that optimize crop growth and minimize the suppressive effects of soil nitrate. One possible aid to management may come through the development and use of simple mathematical functions (models) that will allow farmers to estimate amounts of N2 fixed by a legume crop and the potential net N benefit resulting from that crop. (author). 42 refs, 6 figs, 5 tabs

  16. Understanding mechanisms of host resistance against greenbug in cereal crops - an interdisciplinary, collaborative approach

    At Texas AgriLife Research - Amarillo, we have an ongoing research program focusing on elucidating the mechanisms of interactions between the phloem-feeding aphid pests and cereal crop hosts using the wheat-greenbug as a model system. During this workshop, recent results from our research on the fo...

  17. Characterization of the Fatty Acid and Mineral Compositions of Selected Cereal Cultivars from Turkey

    Asuman Kan

    2014-09-01

    Full Text Available In this present study, crude oil, fatty acid and mineral compositions of wheat (Triticum sp. L., barley (Hordeum vulgare L., triticale (Triticosecale Wittm. ex A. Camus., rye (Secale cereale L., and oat (Avena sativa L. cultivars, respectively, from Turkey were investigated. Both the distribution of saturated fatty acids (SFA and unsaturated fatty acids (UFA, and the mineral contents of evaluated cereals were reported. Fatty acid compositions and mineral contents were determined by gas chromatography/mass spectroscopy (GC/MS and inductively coupled plasma optical emission spectroscopy (ICP-OES techniques, respectively. The highest crude oil content was found in oat [cv. Seydisehir; 5.35%], whereas the lowest crude oil was in triticale [cv. Aslım-95; 1.19 %]. The results showed that the contents of total UFA in the different cultivars varied between 77.1 - 81.5 %. The major components of the cereal oils were determined as oleic and linoleic acid, respectively. The total macro-, micro- element, and heavy metal contents varied between 8638 - 16108 ppm, 113-180 ppm and 1.8 - 6.9 ppm, respectively. As a conclusion, there were significant (p < 0.01 differences between the cereal cultivars in view of their crude oil contents, fatty acid and mineral compositions of the investigated samples from Turkey.

  18. Colour and shape analysis techniques for weed detection in cereal fields

    Pérez, A.J; López, F; Benlloch, J.V.;

    2000-01-01

    Information on weed distribution within the field is necessary to implement spatially variable herbicide application. This paper deals with the development of near-ground image capture and processing techniques in order to detect broad-leaved weeds in cereal crops under actual field conditions. T...

  19. [Glycemic response to consumption of a cereals and legume (Phaseolus vulgaris) bar on healthy individuals].

    Zambrano, Rosaura; Granito, Marisela; Valero, Yolmar

    2013-06-01

    The objective of this work was to formulate a cereals and legume (Phaseolus vulgaris) bar and assess its impact on the glycemic response of healthy individuals, in order to contribute to the healthy food supply beneficial to consumers. A mixture of cereals (corn and oats) and different percentages (20 and 30%) of Phaseolus vulgaris was used to formulate the bar. Additionally, a legume cereal bar without legumes (bar control) was prepared. The bar with 30% of Phaseolus vulgaris was selected through sensory evaluation, being scored with better flavor and texture. This combination of cereals and legumes aminoacid improves complementation and reaches the formulation criteria previously established. Chemical characterization indicated a higher protein content in the bar with 30% of Phaseolus vulgaris (13.55%) relative to the bar control (8.5%). The contents of fat, ash and dietary fiber did not differ between the two bars evaluated. However, the soluble fiber and resistant starch of the selected bar was a 32.05% and 18.67%, respectively, than in the control bar; this may contribute to decreasing the rate of glucose uptake. The selected bar presented a low glycemic index (49) and intermediate glycemic load (12.0) in healthy volunteers, which could lead to a possible reduction in the rate of absorption of glucose into the bloodstream, associated with a carbohydrate content of slow absorption. This bar represents a proposal of a healthy snack for the consumer. PMID:24934069

  20. Suitability of cereal porridges as substrate for probiotic strain Lactobacillus rhamnosus GG

    Ľubomír Valík

    2013-02-01

    Full Text Available The aim of this work was to find new substrates suitable for growth and metabolism of probiotic strain Lactobacillus rhamnosus GG, which would be interesting for development of new functional food. The growth and metabolic activity of Lb. rhamnosus GG in cereal (rye, barley, oat and millet porridges were monitored during fermentation process. Cereal and porridges, were inoculated with this strain at two initial levels to obtain approximately 5 or 6 log colony form units per gram of suspension after sterilization and cooling,. Fermentation was led stationary at 37 °C for 48 hours and viable cell count, pH value, titratable acidity and organic acids were analysed. Metabolic activity of Lb. rhamnosus GG was influenced by inoculation level and by the type of cereal used. The cereals fermented by lactic acid bacteria, especially probiotic strains, might broaden the offer of probiotic products for those suffering from milk allergy.doi:10.5219/242 Normal 0 21 false false false SK X-NONE X-NONE

  1. Preparation of a cereal bar containing bocaiuva: physical, nutritional, microbiological and sensory evaluation

    Cláudia Leite Munhoz

    2014-02-01

    Full Text Available Regional fruit have been increasingly used in recent years in the preparation of foodstuffs because besides promoting the biome preservation, it is obtained differentiated and value-added products. This study aimed to prepare cereal bars containing pulp and kernel of bocaiuva and determine the nutritional quality, assess the acceptability, and microbiological quality. Two formulations of cereal bar were prepared with pulp dehydrated by osmoconvection and kernel of bocaiuva. The formulations were analyzed as for the texture, color analysis, proximate composition, fatty acids profile, mineral, microbiology and sensory evaluation. Cereal bars presented on average, in g 100 g-1, 4.83 moisture, 8.01 protein, 12.93 lipids, 1.30 ash, 53.75 total carbohydrate, 19.78 fiber and 363.41 kcal 100 g-1 total caloric value. Bars represented a source of calcium and iron and had a high content of oleic acid, average of 20 g 100 g-1 total lipids. In the microbiological evaluation, cereal bars have met the standards set by the legislation, being suitable for consumption. As for the attributes evaluated in the sensory analysis, all showed mean values above 6, considered acceptable for consumption. The use of bocaiuva may contribute to highlight differentiated taste and appearance, emphasizing the use of native fruits in the preparation of new products.

  2. NITROGEN AND PHOSPHORUS LIMITED PRODUCTION OF CEREALS AND SEMINATURAL ANNUAL-TYPE PASTURES IN SW SPAIN

    Esselink, Peter; VANGILS, H

    1994-01-01

    Nutrient limited primary production of semi-natural pastures dominated by annuals and of cereals grown in rotation with grazing was surveyed in Extremadura (Spain), using the N and P concentration and the P/N ratio of plant tissue. The N concentration varied between 2.0-3.2 % in pasture legumes and

  3. The Profile and Bioaccessibility of Phenolic Compounds in Cereals Influenced by Improved Extrusion Cooking Treatment.

    Zeng, Zicong; Liu, Chengmei; Luo, Shunjing; Chen, Jun; Gong, Ersheng

    2016-01-01

    The aim of this study was to investigate the effect of Improved Extrusion Cooking Treatment (IECT) on the phenolics and its bioaccessibility in cereals, represented by brown rice, wheat, and oat. Data showed that total phenolic content and total antioxidant activity in free form were significantly decreased, while the bound form was increased after IECT. After IECT, the total free phenolic acids of brown rice and wheat were significantly decreased by 5.88% and 45.66%, respectively, while the total bound phenolic acids of brown rice, wheat, and oat were significantly increased by 6.45%, 8.78%, and 9.10%, respectively. Brown rice provided the most bioaccessible phenolics and antioxidant compounds, followed by oat and wheat. IECT significantly decreased the bioaccessible phenolics of brown rice and oat by 31.09% and 30.95%, while it had minimal effect on the bioaccessible phenolics of wheat. These results showed that IECT greatly affected the phenolics and its bioaccessibiltiy of cereals, with the effect depending on cereal matrix and the sensitivity of free and bound phenolics. Furthermore, bioaccessible phenolic acids of raw and processed cereals were considerably low, and it slightly contributed to the bioaccessible phenolics. PMID:27513581

  4. Anomericity of T-2 toxin-glucosides; masked mycotoxins in cereal crops

    T-2 toxin is a trichothecene mycotoxin produced when the fungus Fusarium infects small grains, especially oats. Ingestion of T-2 toxin contaminated grain can cause diarrhea, hemorrhaging, and feed refusal. Cereal crops infected with mycotoxin-producing fungi form toxin glycosides, sometimes called m...

  5. Sourdough lactic acid bacteria: exploration of non-wheat cereal-based fermentation.

    Coda, Rossana; Cagno, Raffaella Di; Gobbetti, Marco; Rizzello, Carlo Giuseppe

    2014-02-01

    Cereal-based foods represent a very important source of biological as well as of cultural diversity, as testified by the wide range of derived fermented products. A trend that is increasingly attracting bakery industries as well as consumers is the use of non-conventional flours for the production of novel products, characterised by peculiar flavour and better nutritional value. Lactic acid bacteria microbiota of several non-wheat cereals and pseudo-cereals has been recently deeply investigated with the aim of studying the biodiversity and finding starter cultures for sourdough fermentation. Currently, the use of ancient or ethnic grains is mainly limited to traditional typical foods and the bread making process is not well standardised with consequent negative effects on the final properties. The challenge in fermenting such grains is represented by the necessity to combine good technology and sensory properties with nutritional/health benefits. The choice of the starter cultures has a critical impact on the final quality of cereal-based products, and strains that dominate and outcompete contaminants should be applied for specific sourdough fermentations. In this sense, screening and characterisation of the lactic acid bacteria microbiota is very useful in the improvement of a peculiar flour, from both a nutritional and technological point of view. PMID:24230473

  6. Food safety of cereals: a chain wide approach to reduce Fusarium mycotoxins

    Scholten, O.E.; Ruckenbauer, P.; Visconti, A.; Osenburggen, W.A.; Nijs, den A.P.M.

    2002-01-01

    Fusarium head blight (FHB) in wheat and barley and Fusarium ear rot in maize is caused by several Fusarium species. The disease reduces the quality of the seed since several of these fungi produce mycotoxins. From a food safety point of view, consumption of mycotoxin-infected cereals is dangerous as

  7. INFLUENCE DE LA PROPOLIS SUR LA MITOSE DANS LE MERYSTEME DE SECALE CEREALE L.

    Mioara Navrotescu

    2005-08-01

    Full Text Available Cette recherche présente l’influence de propolis sur la mitose dans le merysteme de Secale cereale L. (2n=14. On confirme l’utilisation de plus en plus large de ce produit apicole - propolis - au niveau de la thérapeutique.

  8. Iminosugar inhibitors of carbohydrate-active enzymes that underpin cereal grain germination and endosperm metabolism

    Andriotis, Vasilios M. E.; Rejzek, Martin; Rugen, Michael D.;

    2016-01-01

    -active enzymes in starch degradation in cereal grains through complementary chemical and molecular genetics. These approaches have allowed us to start dissecting aspects of starch degradation and the interplay with cell-wall polysaccharide hydrolysis during germination. With a view to improving and diversifying...

  9. The Effect of Plant Proteins Derived from Cereals and Legumes on Heme Iron Absorption.

    Weinborn, Valerie; Pizarro, Fernando; Olivares, Manuel; Brito, Alex; Arredondo, Miguel; Flores, Sebastián; Valenzuela, Carolina

    2015-11-01

    The aim of this study is to determine the effect of proteins from cereals and legumes on heme iron (Fe) absorption. The absorption of heme Fe without its native globin was measured. Thirty adult females participated in two experimental studies (15 per study). Study I focused on the effects of cereal proteins (zein, gliadin and glutelin) and study II on the effects of legume proteins (soy, pea and lentil) on heme Fe absorption. When heme was given alone (as a control), study I and II yielded 6.2% and 11.0% heme absorption (p > 0.05). In study I, heme Fe absorption was 7.2%, 7.5% and 5.9% when zein, gliadin and glutelin were added, respectively. From this, it was concluded that cereal proteins did not affect heme Fe absorption. In study II, heme Fe absorption was 7.3%, 8.1% and 9.1% with the addition of soy, pea and lentil proteins, respectively. Only soy proteins decreased heme Fe absorption (p < 0.05). These results suggest that with the exception of soy proteins, which decreased absorption, proteins derived from cereals and legumes do not affect heme Fe absorption. PMID:26529009

  10. Barriers and incentives to the production of bioethanol from cereal straw: A farm business perspective.

    Glithero, N J; Ramsden, S J; Wilson, P

    2013-08-01

    The EU renewable energy directive stipulates a requirement for 10% of transport fuels to be derived from renewable sources by 2020. Second generation biofuels offer potential to contribute towards this target with cereal straw representing a potentially large feedstock source. From an on-farm survey of 240 arable farmers, timeliness of crop establishment and benefits of nutrient retention from straw incorporation were cited as reasons for straw incorporation. However, two-thirds (one-third) of farmers would supply wheat (barley) straw for bioenergy. The most popular contract length and continuous length of straw supply was either 1 or 3 years. Contracts stipulating a fixed area of straw supply for a fixed price were the most frequently cited preferences, with £50 t(-1) the most frequently cited minimum contract price that farmers would find acceptable. Arable farmers in England would be willing to sell 2.52 Mt of cereal straw for bioenergy purposes nationally and 1.65 Mt in the main cereal growing areas of Eastern England. Cereal straw would be diverted from current markets or on-farm uses and from straw currently incorporated into soil. Policy interventions may be required to incentivise farmers to engage in this market, but food and fuel policies must increasingly be integrated to meet societal goals. PMID:24926116

  11. Occurrence of free and conjugated Fusarium mycotoxins in cereal based food

    Vendl, O.; Crews, C.; MacDonald, S; R. Krska; Berthiller, F.

    2010-01-01

    Abstract A collection of 84 cereal based food products in 25 composites, including beer, was screened for the presence of deoxynivalenol, zearalenone and their respective metabolites deoxynivalenol-3-glucopyranoside, 3-acetyl-deoxynivalenol, zearalenol-4-glucopyranoside, ?-zearalenol, ?-zearalenol, ?-zearalenol-4-glucopyranoside, ?-zearalenol-4-glucopyranoside and zearalenone-4-sulfate. The most abundant analyte was zearalenone-4-sulfate, which was found in 13 composites, albeit in...

  12. Comparison of composition and antioxidant capacity of some cereals and pseudocereals

    Gorinstein, S.; Lojek, Antonín; Číž, Milan; Pawelzik, E.; Delgado-Licon, E.; Medina, O.J.; Moreno, M.; Salas, I.A.; Goshev, I.

    2008-01-01

    Roč. 43, č. 4 (2008), s. 629-637. ISSN 0950-5423 Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702 Keywords : antioxidant potentials * cereals * polyphenols Subject RIV: BO - Biophysics Impact factor: 1.065, year: 2008

  13. In situ ruminal crude protein degradability of by-products from cereals, oilseeds and animal origin

    Habib, G.; Khan, N.A.; Ali, M.; Bezabih, M.

    2013-01-01

    The aim of this study was to establish a database on in situ ruminal crude protein (CP) degradability characteristics of by-products from cereal grains, oilseeds and animal origin commonly fed to ruminants in Pakistan and South Asian Countries. The oilseed by-products were soybean meal, sunflower me

  14. Digestive and physiological effects of a wheat bran extract, arabino-xylan-oligosaccharide, in breakfast cereal

    We assessed whether a wheat bran extract containing arabino-xylan-oligosaccharide (AXOS) elicited a prebiotic effect and influenced other physiologic parameters when consumed in ready-to-eat cereal at two dose levels. This double-blind, randomized, controlled, crossover trial evaluated the effects o...

  15. Recent trends in ready-to-eat breakfast cereals in the U.S.

    Data in the USDA National Nutrient Database for Standard Reference (SR) were examined to discern trends in ready-to-eat breakfast cereals resulting from manufacturers’ reformulations, many in response to public health concerns and consumer demand. The majority of the nutrient data for breakfast cer...

  16. Beyond whole grain: The European HEALTHGRAIN project aims at healthier cereal foods

    Poutanen, K.; Shepherd, R.; Shewry, P.R.; Delcour, J.A.; Björck, I.; Kamp, J.W. van der

    2008-01-01

    Cereal foods are an important source of carbohydrates and dietary fiber in our diet. Epidemiological evidence increasingly demonstrates that a diet rich in whole grain is protective against development of diet-related disorders such as cardiovascular disease and type 2 diabetes. The majority of cere

  17. Mepiquat: A Process-Induced Byproduct in Roasted Cereal-Based Foodstuffs.

    Bessaire, Thomas; Tarres, Adrienne; Stadler, Richard H; Wermann, Silke; Hofmann, Jocelyne; Theurillat, Viviane; Combremont, Raphaël; Delatour, Thierry

    2016-02-10

    Mepiquat, a growth regulator widely used in agriculture, is also known as a process-induced byproduct formed in coffee from natural constituents during heat treatments such as roasting. This study examines mepiquat formation in cereal-based foodstuffs treated at sufficiently high temperature to trigger methyl transfer reactions that involve glycine betaine and choline naturally present in cereals. Color measurements of roasted barley grains revealed a correlation between thermal treatment and mepiquat content. Trials at industrial scale on instant beverages composed of roasted cereals demonstrated significant increases in mepiquat during the thermal process (in the range of 140-205 μg/kg in final products). A targeted survey of commercial products showed mepiquat in the range 69-381 μg/kg in powdered cereal instant drinks and 42-168 μg/kg in mugicha tea, a roasted barley infusion. These findings will not significantly affect the exposure of consumers to mepiquat due to the low amounts detected. PMID:26805918

  18. Genome sequence of carboxylesterase, carboxylase and xylose isomerase producing alkaliphilic haloarchaeon Haloterrigena turkmenica WANU15

    Samy Selim

    2016-03-01

    Full Text Available We report draft genome sequence of Haloterrigena turkmenica strain WANU15, isolated from Soda Lake. The draft genome size is 2,950,899 bp with a G + C content of 64% and contains 49 RNA sequence. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LKCV00000000.

  19. The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

    Nordberg, Henrik; Cantor, Michael; Dushekyo, Serge; Hua, Susan; Poliakov, Alexander; Shabalov, Igor; Smirnova, Tatyana; Grigoriev, Igor V.; Dubchak, Inna

    2013-10-10

    The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approaches in support of DOE missions related to clean energy generation and environmental characterization. The JGI Genome Portal (http://genome.jgi.doe.gov) provides unified access to all JGI genomic databases and analytical tools. The JGI maintains extensive data management systems and specialized analytical capabilities to manage and interpret complex genomic data. A user can search, download and explore multiple data sets available for all DOE JGI sequencing projects including their status, assemblies and annotations of sequenced genomes. Here we describe major updates of the Genome Portal in the past 2 years with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI.

  20. Calidad tecnológica de la harina de trigo obtenida a partir de cereales ozonizados

    Juliana Lobo Paes

    2010-01-01

    Full Text Available El cloro es uno de los principales agentes antimicrobianos utilizados en la industria molinera, pero debido a la formación de organoclorados tóxicos o incluso cancerígenos su uso no ha sido considerado seguro. El proceso de ozonización puede considerarse como uno de los más modernos y eficientes, tanto en la desinfección de insectos-plaga como en los microorganismos. Sin embargo, es necesario evaluar su efecto sobre la calidad de cereales y subproductos. Así, el objetivo de este trabajo fue evaluar el efecto del gas ozono en la calidad tecnológica de la harina de trigo obtenidos a partir de cereales ozonizados. Los cereales de trigo fueron ozonizado con una concentración de 200 ppm por períodos de 0, 48, 96, 144, 192 y 240 h, y posteriormente molidos para obtener harina. Para evaluar el efecto del gas en la harina de trigo fueron realizados los análisis físico químicos (tasa de extracción, la composición y la Falling number y reológicas (alveógrafia, farinógrafia y extensografia. El gas ozono se ha obtenido mediante el generador de ozono desarrollado por el Ozone & Life y la concentración fue cuantificada por el método Yodométrica. La harina de trigo obtenidas a partir de cereales ozonizados no presento diferencia significativa en la tasa de extracción, composición y Falling Number, alveografia, farinógrafia y extensoggrafia cuando fue comparada con la harina obtenida de granos no ozonizados. Se concluye que el gas de ozono puede ser considerado una alternativa para ser implementada en la industria molinera, ya que no afecta la calidad tecnológica de harinas procedentes de cereales ozonizada.

  1. Chicory (Cichorium intybus L.) and cereals differently affect gut development in broiler chickens and young pigs.

    Liu, Haoyu; Ivarsson, Emma; Lundh, Torbjörn; Lindberg, Jan Erik

    2013-01-01

    Dietary fiber, resistant to host-mediated digestion in the small intestine due to lack of endogenous enzymes, impacts many facets of animal health and is associated with gut development especially in young monogastrics. Furthermore, it can be used as in-feed antibiotic alternative. Chicory (Cichorium intybus L.) forage with high content of pectin (uronic acids as building blocks) is a novel class of dietary fiber that is chemically different from cereal grains (with high content of arabinoxylans). In the present study, we investigated effects of dietary inclusion of chicory forage on digestibility, gut morphology and microbiota in broilers and young pigs. In the chicken experiment, 160 1-d old broiler chicks were fed 3 nutritionally balanced diets for 30 d including a cereal-based diet and 2 diets with part of the cereals substituted with 60 and 120 g/kg chicory forage (CF60 and CF120), whereas in the pig experiment, 18 seven-wk old Yorkshire pigs were fed 3 diets for 18 d including a cereal-based diet and 2 diets with 80 and 160 g/kg chicory forage inclusion (CF80 and CF160). Our results showed that young pigs were capable to utilize chicory forage well with higher total tract apparent digestibility (TTAD) of all fiber fractions, particularly uronic acid, compared with the control (P microbiota revealed substantial dietary effects (cereal control diet vs. chicory forage inclusion) on the relative abundance of 2 dominant bacterial phylotypes (Prevotella sp. vs. Roseburia sp.) respectively (P ingredient in diets for both pigs and chickens. PMID:24341997

  2. The content of mercury in various types of cereals that were grown in the model conditions

    Ľuboš Harangozo

    2016-01-01

    Full Text Available The consumption of cereals in Slovakia but also worldwide is increasing by every year. From 30000 to 50000 tons of mercury circulates throught the biosphere that gets into the atmosphere degassing of the earth's crust and world oceans. Mercury affects CNS and causes its disorders. The high doses of mercury causes a lot of different changes of personality as well as increased agitation, memory lossorinsomnia. It can also affect other organ systems such as the kidney. The exposure level is reflected in the concentration of mercury in blood and urine. The aim of our work was the evaluation of transfer of mercury from sludge to edible part of chosen cereals. The objectives were achieved in simulated conditions of growing pot experiment. We used agricultural soil from the location of Výčapy - Opatovce for the realization of the experiment. The sludge, which was added atvarious doses, was taken from Central Spiš area from locality of Rudňany near the village where minedironore that contains mainly copperand mercury during last few decades was. We used three types of cereals: barley (Hordeum sativum L. variety PRESTIGE, spring wheat (Triticum aestivum L. variety ISJARISSA and oat (Avena sativa L. variety TATRAN. The length of growing season was 90 days. From the obtained results of two years can be concluded that the accumulation of mercury by seed follows wheat ˂ barley ˂ oat. Even though that the oat is characterized by the highest accumulation of mercuryin the seeds, the content did not exceed the maximum level sspecified by The Codex Alimentarius of Slovak Republic. The results shows that the suitable cultivation of the cereals in localities, which are contaminated with heavy metals, especially by mercury, that the high content of mercury in soil do not pose a risk of accumulation of the metal into the cereal grain.

  3. Recombination, extrachromosomal dna and genome stability

    Eukaryotic chromosomes are faithfully transmitted from one generation to another. However, eukaryotic genomes are much more dynamic than this view permits. Repetitive sequences are among the most rapidly evolving genome constituents and copy number variations are extremely abundant even within species. Rapid evolution of repetitive DNA is particularly apparent during domestication of many crops and is, for example, well documented in cereals such as maize or barley. Importantly, deletions or insertions of such sequences may contribute to variation in protein-coding gene expression. This can occur by altering gene copy number and expression, by disrupting regulatory sequences or by altering regulatory RNA production. One mechanism that may significantly contribute to copy number variation and rapid evolution of crop genomes involves the formation of extrachromosomal circular DNA molecules (eccs). I will present evidence for eccDNA derived from centromeres, 5S rDNA and telomeres in Arabidopsis. I will further discuss the role of homologous recombination, telomere metabolism and chromatin modification in eccDNA biogenesis. Finally, I will discuss the impact of eccDNA metabolism on the stability and evolution of plant genomes. (author)

  4. DIALIZABILIDAD DE HIERRO Y ZINC EN CEREALES PARA DESAYUNOS COMERCIALES FORTIFICADOS CON HIERRO ELEMENTAL, SULFATO FERROSO O EDTA FERRICO SODICO IRON AND ZINC DIALYSABILITY IN COMMERCIAL BREAKFAST CEREALS FORTIFIED WITH ELEMENTAL IRON, FERROUS SULPHATE OR FERRIC SODIUM EDTA

    Carolina Elisa Cagnasso; Laura Beatriz López; María Julieta Binaghi; Néstor Raúl Pellegrino; Mirta Eva Valencia

    2010-01-01

    Se comparó la dializabilidad de Fe y Zn en 7 cereales para desayuno comercialmente fortificados o no, con Fe elemental y ZnO y se comparó la dializabilidad de Fe y Zn en tres tipos diferentes de cereales experimentalmente fortificados con ZnO y FeNa2EDTA o FeSO4 en el laboratorio. Se utilizó una metodología in vitro que mide el porcentaje de dializabilidad (D%) del mineral en condiciones controladas de pH. Los cereales comercialmente fortificados presentaron valores de DFe% entre 0,4 y 15,0 y...

  5. Dating the introduction of cereal cultivation to the British Isles: early palaeoecological evidence from the Isle of Man

    Innes, James B.; Blackford, Jeffrey J.; Davey, Peter J.

    2003-10-01

    The adoption of cereal cultivation is a key benchmark in the transition from Mesolithic hunter-gatherer foraging to Neolithic farming economies, but the nature, timing and ecological-cultural context of the earliest cereal use in the British Isles and northwest Europe is still uncertain. We present AMS radiocarbon dating and fine-resolution pollen evidence from the Isle of Man for cereal growing in the latter stages of a distinct episode of forest disturbance at almost 6000 yr BP (uncalibrated). The coherent ecological structure of this phase at the fine resolution level suggests that it records cereal cultivation well before the Ulmus decline, rather than wild grass pollen grains. This example is one of a cluster of early dates for cereal-type pollen near the start of the sixth millenium BP, including several around the Irish Sea, which indicate that the introduction of cereal agriculture probably occurred as early in the central British Isles as in the northern European plain. This early cereal phase is followed later by a probable phase of pre-Ulmus decline pastoral activity. We also report Mesolithic age woodland disturbance around 7000 yr BP (uncalibrated) and the first radiocarbon dates for mid-Holocene forest history of the Isle of Man. Copyright

  6. Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production

    Thurber, Carrie S.; Ma, Justin M; Higgins, Race H; Brown, Patrick J.

    2013-01-01

    Background Sorghum is a tropical C4 cereal that recently adapted to temperate latitudes and mechanized grain harvest through selection for dwarfism and photoperiod-insensitivity. Quantitative trait loci for these traits have been introgressed from a dwarf temperate donor into hundreds of diverse sorghum landraces to yield the Sorghum Conversion lines. Here, we report the first comprehensive genomic analysis of the molecular changes underlying this adaptation. Results We apply genotyping-by-se...

  7. Genomic Analysis of Xanthomonas translucens Pathogenic on Wheat and Barley Reveals Cross-Kingdom Gene Transfer Events and Diverse Protein Delivery Systems

    Gardiner, Donald M.; Upadhyaya, Narayana M; Stiller, Jiri; Ellis, Jeff G.; Dodds, Peter N; Kazan, Kemal; Manners, John M.

    2014-01-01

    In comparison to dicot-infecting bacteria, only limited numbers of genome sequences are available for monocot-infecting and in particular cereal-infecting bacteria. Herein we report the characterisation and genome sequence of Xanthomonas translucens isolate DAR61454 pathogenic on wheat and barley. Based on phylogenetic analysis of the ATP synthase beta subunit (atpD) gene, DAR61454 is most closely related to other X. translucens strains and the sugarcane- and banana- infecting Xanthomonas str...

  8. The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

    Lu, Jianguo; Peatman, Eric; Yang, Qing; Wang, Shaolin; Hu, Zhiliang; Reecy, James; Kucuktas, Huseyin; Liu, Zhanjiang

    2010-01-01

    The catfish genome database, cBARBEL (abbreviated from catfish Breeder And Researcher Bioinformatics Entry Location) is an online open-access database for genome biology of ictalurid catfish (Ictalurus spp.). It serves as a comprehensive, integrative platform for all aspects of catfish genetics, genomics and related data resources. cBARBEL provides BLAST-based, fuzzy and specific search functions, visualization of catfish linkage, physical and integrated maps, a catfish EST contig viewer with...

  9. Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

    Kersey, Paul; Bower, Lawrence; Morris, Lorna; Horne, Alan; Petryszak, Robert; Kanz, Carola; Kanapin, Alexander; Das, Ujjwal; Michoud, Karine; Phan, Isabelle; Gattiker, Alexandre; Kulikova, Tamara; Faruque, Nadeem; Duggan, Karyn; Mclaren, Peter

    2004-01-01

    Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integratio...

  10. User oriented access to secure biomedical resources through the grid

    Sinnott, R.O.; Ajayi, O.; J. Jiang; Stell, A.J.; Watt, J

    2006-01-01

    The life science domain is typified by heterogeneous data sets that are evolving at an exponential rate. Numerous post-genomic databases and areas of post-genomic life science research have been established and are being actively explored. Whilst many of these databases are public and freely accessible, it is often the case that researchers have data that is not so freely available and access to this data needs to be strictly controlled when distributed collaborative research is undertaken. G...

  11. Herbarium genomics

    Bakker, Freek T.; Lei, Di; Yu, Jiaying;

    2016-01-01

    Herbarium genomics is proving promising as next-generation sequencing approaches are well suited to deal with the usually fragmented nature of archival DNA. We show that routine assembly of partial plastome sequences from herbarium specimens is feasible, from total DNA extracts and with specimens...... up to 146 years old. We use genome skimming and an automated assembly pipeline, Iterative Organelle Genome Assembly, that assembles paired-end reads into a series of candidate assemblies, the best one of which is selected based on likelihood estimation. We used 93 specimens from 12 different...... correlation between plastome coverage and nuclear genome size (C value) in our samples, but the range of C values included is limited. Finally, we conclude that routine plastome sequencing from herbarium specimens is feasible and cost-effective (compared with Sanger sequencing or plastome...

  12. ESTUDIO COMPARATIVO DE CARACTERÍSTICAS FÍSICOQUÍMICAS DE CEREALES KELLOGG'S COMPARATIVE STUDY OF CHEMISTRY AND PHYSICS CHARACTERISTICS OF KELLOGG'S CEREALS

    Judith Prieto M; María A Méndez M; Alma D Román G; Francisco Prieto G

    2005-01-01

    Se realizó un estudio comparativo de las características físicoquímicas de tres variedades de cereales Kellogg's para desayuno, hojuelas de arroz (Special K), hojuelas de maíz (Zucaritas) y hojuelas de trigo (All Brand), y se compararon con las especificaciones dadas por el fabricante. Se constató que existen pequeñas diferencias que pueden ser debidas al tiempo transcurrido desde su elaboración. Se estudió por técnicas de difracción de rayos Lasser la distribución y tamaños de las partículas...

  13. Legumes increase rhizosphere carbon and nitrogen relative to cereals in California agricultural plots

    Bergman, R.; Maltais-landry, G.

    2013-12-01

    Nitrogen (N) is an essential nutrient to plant growth, therefore a sufficient supply is needed for high yields. By using N-fixing plants like legumes in crop rotation, we can increase soil N and yields of following crops. Furthermore, legumes also affect soil carbon (C) and C:N ratios, which impacts nutrient cycling in soils. We assessed the effects of two legumes (vetch, fava bean) and a cereal mixture (oats and wheat) on soil N and C by comparing both rhizosphere and bulk soils. We studied the impacts of these plants with different management types (organic, low-input conventional, unfertilized) to see if plant effects on soil C and N changed across management. We used plots from the Long-Term Research on Agricultural Systems (LTRAS) experiment (Davis, CA) to conduct this experiment, where three plots were under each management type. Within each of these plots, we sampled three micro-plots, where we collected rhizosphere soil from fava bean, vetch, and cereals as well as bulk soil, i.e. non-rhizosphere soil. We collected 108 samples, each of which were dried and ball-milled into a fine, uniform powder. Tin capsules with 15-30mg of soil were then analyzed with a Carlo Erba Elemental analyzer to measure how much N and C was present in each of the samples. The different management types didn't affect the relationship among plants, but soil C and N were highest in organic and lowest in unfertilized plots. We found that N was significantly higher in legume rhizosphere than cereal rhizosphere and bulk soils. Soil C was also higher in legumes vs. cereals and bulk soils, but the only significant difference was with the bulk soils. This ultimately resulted in lower C:N ratios in the rhizosphere of legumes, only vetch, however, had significantly lower soil C:N than cereals. Vetch had higher N, and lower C and C:N than fava bean, but the difference between the two legumes was never significant. Similarly, cereals had higher C and N and lower C:N than bulk soils, although

  14. Plantagora: modeling whole genome sequencing and assembly of plant genomes.

    Roger Barthelson

    Full Text Available BACKGROUND: Genomics studies are being revolutionized by the next generation sequencing technologies, which have made whole genome sequencing much more accessible to the average researcher. Whole genome sequencing with the new technologies is a developing art that, despite the large volumes of data that can be produced, may still fail to provide a clear and thorough map of a genome. The Plantagora project was conceived to address specifically the gap between having the technical tools for genome sequencing and knowing precisely the best way to use them. METHODOLOGY/PRINCIPAL FINDINGS: For Plantagora, a platform was created for generating simulated reads from several different plant genomes of different sizes. The resulting read files mimicked either 454 or Illumina reads, with varying paired end spacing. Thousands of datasets of reads were created, most derived from our primary model genome, rice chromosome one. All reads were assembled with different software assemblers, including Newbler, Abyss, and SOAPdenovo, and the resulting assemblies were evaluated by an extensive battery of metrics chosen for these studies. The metrics included both statistics of the assembly sequences and fidelity-related measures derived by alignment of the assemblies to the original genome source for the reads. The results were presented in a website, which includes a data graphing tool, all created to help the user compare rapidly the feasibility and effectiveness of different sequencing and assembly strategies prior to testing an approach in the lab. Some of our own conclusions regarding the different strategies were also recorded on the website. CONCLUSIONS/SIGNIFICANCE: Plantagora provides a substantial body of information for comparing different approaches to sequencing a plant genome, and some conclusions regarding some of the specific approaches. Plantagora also provides a platform of metrics and tools for studying the process of sequencing and assembly

  15. Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.

    Mustafiz, Ananda; Kumari, Sumita; Karan, Ratna

    2016-06-01

    Rice, one of the most important cereal crops for mankind, feeds more than half the world population. Rice has been heralded as a model cereal owing to its small genome size, amenability to easy transformation, high synteny to other cereal crops and availability of complete genome sequence. Moreover, sequence wealth in rice is getting more refined and precise due to resequencing efforts. This humungous resource of sequence data has confronted research fraternity with a herculean challenge as well as an excellent opportunity to functionally validate expressed as well as regulatory portions of the genome. This will not only help us in understanding the genetic basis of plant architecture and physiology but would also steer us towards developing improved cultivars. No single technique can achieve such a mammoth task. Functional genomics through its diverse tools viz. loss and gain of function mutants, multifarious omics strategies like transcriptomics, proteomics, metabolomics and phenomics provide us with the necessary handle. A paradigm shift in technological advances in functional genomics strategies has been instrumental in generating considerable amount of information w.r.t functionality of rice genome. We now have several databases and online resources for functionally validated genes but despite that we are far from reaching the desired milestone of functionally characterizing each and every rice gene. There is an urgent need for a common platform, for information already available in rice, and collaborative efforts between researchers in a concerted manner as well as healthy public-private partnership, for genetic improvement of rice crop better able to handle the pressures of climate change and exponentially increasing population. PMID:27252584

  16. Evidence of mycotoxins (aflatoxin B1 and ochratoxin A) using the radioimmunoassay (RIA) in naturally contaminated cereals

    The aim of our study was to gain starting information on the aflatoxin B1 and ochratoxin A levels in cereals and feed mixtures which are in poultry breeding. To ascertain the presence of mycotoxins, we examined the cultivars of cereals (maize and wheat) and the feed mixtures. The cereals came from different regions of eastern Slovakia. In all cereals examined, the low mycotoxin levels did not exceed the tolerance limit set by hygienic standard (Sv. 61, 1986, No. 69). In wheat, the contamination by aflatoxin B1 ranged from 0.028 to 0.125 μg·kg-1. In maize, the contamination by aflatoxin B1 ranged from 0.166 to 0.707 μg·kg-1. The results enhance our knowledge of feedstuff and feed mixture contamination in poultry breeding

  17. Decreasing post-harvest losses in cereal grains by gamma irradiation in relation to aflatoxin producing potential

    A gamma irradiation dose of 0.5 KGY reduced post-harvest losses from 32% to 2% in stored cereal grains (wheat, maize and rice). However, this treatment was found to augment significantly aflatoxin B1 production by 15-63% and 21-81% over that of controls for naturally infected-irradiated and artificially infected-irradiated stored cereal grains, respectively. A high gamma irradiation dose of 5 KGY decontaminated harmful insects and microorganisms in stored cereal grains and reduced post-harvest losses from 32% to 1%. This decontaminating gamma irradiation dose was found to be a real treatment to be exploited for decreasing post-harvest losses as it improves hygienic quality of grains due its ability to eliminate aflatoxin B1 production in irradiated-stored cereal grains

  18. Effect of fermentation of cereals on the degradation of polysaccharides and other macronutrients in the gastrointestinal tract of growing pigs

    Sholly, D.M.; Jørgensen, Henry Johs. Høgh; Sutton, A.L.; Richert, B.T.; Knudsen, Knud Erik Bach

    2011-01-01

    square design. Pigs were cannulated and housed individually in metabolism pens during sample collection. The 4 cerealbased diets were nonfermented liquid barley (NFLB), nonfermented liquid wheat (NFLW), fermented liquid barley (FLB), and fermented liquid wheat (FLW). The fermented feeds were prepared by...... (P = 0.243) on the fecal digestibility of nonstarch polysaccharides in either of the cereals but their digestibility was 10.0% greater (P < 0.001) in pigs fed wheat than the barley-based diets. In conclusion, fermentation of cereal before feeding altered the dietary composition and influenced flow...... storing the dietary cereals (barley and wheat) and water [1:2.75 (wt/wt)] in a closed tank at 25°C for 2 d, after which 50% of the volume was removed and replaced with an equal amount of fresh cereals and water after each afternoon meal. At the time of feeding (0730 and 1430 h), the remaining dietary...

  19. The UCSC Genome Browser Database: update 2006

    Hinrichs, A S; Karolchik, D; Baertsch, R;

    2006-01-01

    The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Genome annotations typically include assembly data, sequence composition, genes and gene predictions, m......RNA and expressed sequence tag evidence, comparative genomics, regulation, expression and variation data. The database is optimized to support fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. The Genome Browser displays a wide variety...... of annotations at all scales from single nucleotide level up to a full chromosome. The Table Browser provides direct access to the database tables and sequence data, enabling complex queries on genome-wide datasets. The Proteome Browser graphically displays protein properties. The Gene Sorter allows filtering...

  20. WebGMAP: a web service for mapping and aligning cDNA sequences to genomes

    Liang, Chun; Liu, Lin; Ji, Guoli

    2009-01-01

    The genomes of thousands of organisms are being sequenced, often with accompanying sequences of cDNAs or ESTs. One of the great challenges in bioinformatics is to make these genomic sequences and genome annotations accessible in a user-friendly manner to general biologists to address interesting biological questions. We have created an open-access web service called WebGMAP (http://www.bioinfolab.org/software/webgmap) that seamlessly integrates cDNA-genome alignment tools, such as GMAP, with ...

  1. A review on flow characterization methods for cereal grain-based powders.

    Ambrose, R P Kingsly; Jan, Shumaila; Siliveru, Kaliramesh

    2016-01-30

    Flow difficulties during handling, storage, and processing are common in cereal grain-based powder industries. The many studies that focus on the flow properties of powders can be classified as flow indicators, shear properties, and dynamic flow properties. The non-uniformity of physical and chemical characteristics of the individual particles that make up the bulk solid of cereal grain-based powders adds complexity to the characterization of flow behavior. Even so, knowledge of flow behavior is critical to the design of productive and cost-effective equipment for handling and processing of these powders. Because many factors influence flow, a single property/index value may not satisfactorily quantify the flow or no-flow of powders. For powders of biological origin, chemical composition and environmental factors such as temperature and relative humidity complicate flow characterization. This review focuses on the specific flow characteristics that directly affect powder flow during handling, processing, and storage. PMID:26095631

  2. Relative sensitivity of a leguminous and a cereal crop to sulphur dioxide pollution

    Prasad, B.J.; Rao, D.N.

    1982-09-01

    The present investigation attempts to identify the factors responsible for sensitivity or resistance of plants to SO/sub 2/. Experiments were conducted with a leguminous plant, soybean Glycine max, and a cereal plant, wheat Triticum aestivum. The control and SO/sub 2/ treated samples of soybean and wheat were periodically analysed for changes in leaf-extract pH, contents of sulphur, pigments, ascorbic acid, protein, carbohydrate and calorific value and phytomass accumulation. Soybean showed greater responses to SO/sub 2/ than wheat, with lower leaf-extract pH, higher accumulation of sulphur on SO/sub 2/ threatment and lower contents of chlorophyll, ascorbic acid and total carbohydrate. It is suggested that leguminous crops may be more sensitive to SO/sub 2/ than cereal crops.

  3. Ecology and Control of Cereal Cyst Nematode (Heterodera avenae) in Southern Australia.

    Brown, R H

    1984-07-01

    The ecology and control of cereal cyst nematode in southern Australia is reviewed. The wide distribution of Heterodera avenae in Victoria and South Australia is due largely to movement of cysts by wind during dust storms. The fungus Rhizoctonia solani frequently is associated with the nematode in a disease complex in wheat, and disease symptoms are most severe on lighter or well structured soils. Crop rotations which include periods of fallow, or of nonhost crop reduce population levels of H. avenae and improve yields. Early-sown crops (April-May) are less severely damaged than late-sown crops (June-July). The resowing of damaged wheat crops or the application of nitrogenous fertilizers rarely improve grain yields. 'Katyil,' the world's first wheat cultivar bred specifically with resistance to H. avenae, has been released in Victoria. Chemical control of the nematode in cereals is now commercially feasible, and five nematicides are registered for use by growers. PMID:19294014

  4. Fusarium Toxins in Cereals: Occurrence, Legislation, Factors Promoting the Appearance and Their Management.

    Ferrigo, Davide; Raiola, Alessandro; Causin, Roberto

    2016-01-01

    Fusarium diseases of small grain cereals and maize cause significant yield losses worldwide. Fusarium infections result in reduced grain yield and contamination with mycotoxins, some of which have a notable impact on human and animal health. Regulations on maximum limits have been established in various countries to protect consumers from the harmful effects of these mycotoxins. Several factors are involved in Fusarium disease and mycotoxin occurrence and among them environmental factors and the agronomic practices have been shown to deeply affect mycotoxin contamination in the field. In the present review particular emphasis will be placed on how environmental conditions and stress factors for the crops can affect Fusarium infection and mycotoxin production, with the aim to provide useful knowledge to develop strategies to prevent mycotoxin accumulation in cereals. PMID:27187340

  5. Methods for analysis of the distribution and speciation of iron and zinc in the cereal grain

    Hansen, Thomas Hesselhøj

    identification of P and S with mineral micronutrients can therefore be a circumstantial evidence for their chemical speciation. The focus of this PhD has therefore been on the analysis of mineral micronutrients as well as S and P. In this PhD, four methods for elemental analysis of the cereal grain have been...... novel high-throughput micro digestion method was developed, enabling the analysis of total element concentrations in small tissue fractions, such as the embryo of cereal grains. The method is based on small closed bombs that are microwaved and was validated for sample amounts between 1-20 mg using...... certified reference materials. This enabled high-throughput analysis of different grain tissue fractions and the variability in between them.. Moreover two methods for quantitative hyphenated ICP-MS analysis were developed. One enabled quantification of species in a chromatographic separation and the other...

  6. Screening Cereals Quality by Electronic Nose: the Example of Mycotoxins Naturally Contaminated Maize and Durum Wheat

    Campagnoli, Anna; Dell'Orto, Vittorio; Savoini, Giovanni; Cheli, Federica

    2009-05-01

    Mycotoxins represent an heterogeneous group of toxic compounds from fungi metabolism. Due to the frequent occurrence of mycotoxins in cereals commodities the develop of cost/effective screening methods represent an important topic to ensure food and feed safety. In the presented study a commercial electronic nose constituted by ten MOS (Metal Oxide Sensors) was applied to verify the possibility of discriminating between mycotoxins contaminated and non-contaminated cereals. The described analytical approach was able to discriminate contaminated and non-contaminated samples both in the case of aflatoxins infected maize and deoxynivalenol infected durum wheat samples. In the case of maize data two sensors from the array revealed a partial relation with the level of aflatoxins. These results could be promising for a further improvement of electronic nose application in order to develop a semi-quantitative screening approach to mycotoxins contamination.

  7. Evaluation of anaerobic degradation, biogas and digestate production of cereal silages using nylon-bags.

    Negri, Marco; Bacenetti, Jacopo; Fiala, Marco; Bocchi, Stefano

    2016-06-01

    In this study, the degradation efficiency and the biogas and digestate production during anaerobic digestion were evaluated for the cereal silages most used to feed biogas plants. To this purpose, silages of: maize from the whole plant, maize from the ear, triticale and wheat were digested, inside of nylon bags, in laboratory scale digesters, for 75days. Overall, the test involved 288 nylon bags. After 75days of digestion, the maize ear silage shows the highest degradation efficiency (about 98%) while wheat silage the lowest (about 83%). The biogas production ranges from 438 to 852Nm(3)/t of dry matter for wheat and ear maize silage, respectively. For all the cereal silages, the degradation as well as the biogas production are faster at the beginning of the digestion time. Digestate mass, expressed as percentage of the fresh matter, ranges from 38% to 84% for wheat and maize ear silage, respectively. PMID:26946439

  8. Pressure ratio of cereal grains determined in a uniaxial compression test

    Rusinek R.

    2002-03-01

    Full Text Available The pressure ratio of cereal grains was determi- ned in a uniaxial compression test. Experiments were performed according to Eurocode 1 recommendations. The tester was 210 mm in diameter and 100 mm high. The specimen was loaded to the reference vertical stress of 100 kPa using a universal loading frame at a constant displacement rate of 0.35 mm min-1. Lateral to vertical pressure ratio was found dependent on procedure of the sample deposition. The pressure ratio of cereal grain generally decreased with an increase in moisture content. Experimental results were compared with theoretical consideration based on Janssen’s method of pressure calculation in grain bins and with simplified approximation recommended by Eurocode 1. Significant differen- ces between theoretical and experimental values were obtained.

  9. Fusarium Toxins in Cereals: Occurrence, Legislation, Factors Promoting the Appearance and Their Management

    Davide Ferrigo

    2016-05-01

    Full Text Available Fusarium diseases of small grain cereals and maize cause significant yield losses worldwide. Fusarium infections result in reduced grain yield and contamination with mycotoxins, some of which have a notable impact on human and animal health. Regulations on maximum limits have been established in various countries to protect consumers from the harmful effects of these mycotoxins. Several factors are involved in Fusarium disease and mycotoxin occurrence and among them environmental factors and the agronomic practices have been shown to deeply affect mycotoxin contamination in the field. In the present review particular emphasis will be placed on how environmental conditions and stress factors for the crops can affect Fusarium infection and mycotoxin production, with the aim to provide useful knowledge to develop strategies to prevent mycotoxin accumulation in cereals.

  10. Allelic variation at a single gene increases food value in a drought-tolerant staple cereal.

    Gilding, Edward K; Frère, Celine H; Cruickshank, Alan; Rada, Anna K; Prentis, Peter J; Mudge, Agnieszka M; Mace, Emma S; Jordan, David R; Godwin, Ian D

    2013-01-01

    The production of adequate agricultural outputs to support the growing human population places great demands on agriculture, especially in light of ever-greater restrictions on input resources. Sorghum is a drought-adapted cereal capable of reliable production where other cereals fail, and thus represents a good candidate to address food security as agricultural inputs of water and arable land grow scarce. A long-standing issue with sorghum grain is that it has an inherently lower digestibility. Here we show that a low-frequency allele type in the starch metabolic gene, pullulanase, is associated with increased digestibility, regardless of genotypic background. We also provide evidence that the beneficial allele type is not associated with deleterious pleiotropic effects in the modern field environment. We argue that increasing the digestibility of an adapted crop is a viable way forward towards addressing food security while maximizing water and land-use efficiency. PMID:23403584

  11. The impact of milling and thermal processing on phenolic compounds in cereal grains.

    Ragaee, Sanaa; Seetharaman, Koushik; Abdel-Aal, El-Sayed M

    2014-01-01

    Consumption of wholegrain foods has been recommended for healthy diets. The beneficial health properties of wholegrain products have been associated with the presence of higher amounts of dietary fiber and antioxidants and lower calories as compared to their respective refined ones. Phenolic compounds are mainly attributed to antioxidant properties of wholegrain foods. This review article provides a single comprehensive source that describes effects of milling and thermal processing on phenolic compounds and antioxidant properties in cereals. In general, milling and pearling processes affect the distribution of phenolic, compounds and thus antioxidant properties vary among the milling fractions. Thermal processes such as baking and extrusion could cause negative or positive effects on phenolic compounds and antioxidant properties of the end product subject to grain type and processing conditions. Thus factors that enhance health benefits of wholegrain cereal products have been discussed. PMID:24499063

  12. Herbicide spring treatments for the control of brome grasses (Bromus spp. in winter cereals

    Gehring, Klaus

    2014-02-01

    Full Text Available The efficacy of different ALS-inhibiting herbicides for the control of brome species (Bromus spp. was tested in three field trials in the year 2010 – 2012 in the region of North-West-Bavaria Franken. As a result of the trials the standard herbicide Attribut (Propoxycarbazone was confirmed for the control of brome. In case of infestation with brome and black grass the herbicide Broadway (Pyroxsulam offers a certain control of both problematic grass weeds. This illustrates the high dependency of sufficient brome control in winter cereals on the effectiveness of specific ALS-Inhibitor herbicides. Because of the high risk of herbicide resistance to ACCaseand ALS-inhibiting herbicides in brome, integrated weed management is essential for the sustainable control of brome in winter cereals, respectively winter wheat.

  13. Role of Cereal Secondary Metabolites Involved in Mediating the Outcome of Plant-Pathogen Interactions

    Lauren A. Du Fall

    2011-12-01

    Full Text Available Cereal crops such as wheat, rice and barley underpin the staple diet for human consumption globally. A multitude of threats to stable and secure yields of these crops exist including from losses caused by pathogens, particularly fungal. Plants have evolved complex mechanisms to resist pathogens including programmed cell death responses, the release of pathogenicity-related proteins and oxidative bursts. Another such mechanism is the synthesis and release of secondary metabolites toxic to potential pathogens. Several classes of these compounds have been identified and their anti-fungal properties demonstrated. However the lack of suitable analytical techniques has hampered the progress of identifying and exploiting more of these novel metabolites. In this review, we summarise the role of the secondary metabolites in cereal crop diseases and briefly touch on the analytical techniques that hold the key to unlocking their potential in reducing yield losses.

  14. Exposure assessment to ochratoxin A in Catalonia (Spain) based on consumption of cereals, nuts, coffee, wine, and beer

    Coronel, Maria Bernarda; Marín, Sonia; Cano-Sancho, German; Ramos, Antonio J.; Sanchis, Vicent

    2012-01-01

    Abstract Ochratoxin A (OTA) was analysed in composite samples of cereal-based baby foods, beer, breakfast cereals (corn- and rice and wheat-based), loaf bread, peanuts, and pistachios. Foodstuffs were collected in hypermarkets and supermarkets of twelve cities of the Spanish region of Catalonia, and composite samples were prepared for analysis: liquid-liquid extraction, followed by immunoaffinity column clean-up and HPLC-fluorescence detection. Consumption data of the selected food...

  15. Single-compound and cumulative risk assessment of mycotoxins present in breakfast cereals consumed by children from Lisbon region, Portugal

    Assunção, Ricardo; Vasco, Elsa; Nunes, Baltazar; Loureiro, Susana; Martins, Carla; Alvito, Paula

    2015-01-01

    Humans can be exposed to multiple chemicals, but current risk assessment is usually carried out on one chemical at a time. Mycotoxins are commonly found in a variety of foods including those intended to consumption by children namely breakfast cereals. The present study aims to perform, the risk assessment of single and multiple mycotoxins present in breakfast cereals consumed by children (1e3 years old) from Lisbon region, Portugal. Daily exposure of children to ochratoxin A, fum...

  16. Consumer Values of Health-Related Food Symbols and Chemical Food Additives - The Case of Breakfast Cereals

    Thunström, Linda

    2009-01-01

    In this paper we analyze consumers’ revealed values of food symbols indicating nutritious and organic food, as well as consumers’ revealed values for chemical food additives. We do so by estimating a hedonic price function based on a rich data set on breakfast cereal purchases. Our findings suggest that consumers positively value chemical food additives in breakfast cereals, suggesting that the positive taste effect from e.g. chemical taste enhancers, emulsifiers, colourings and preservatives...

  17. Replacement of Cereal with Low Starch Fibrous By-Products on Nutrients Utilization and Methane Emissions in Dairy Goats

    IBÁÑEZ SANCHIS, CARLA; Moya, V.J.; Arriaga, Haritz; López, Diana; Merino, Pilar; Fernández Martínez, Carlos Javier

    2015-01-01

    [EN] Feeding systems for dairy ruminants need to ensure high intake of energy to achieve maximum milk production potential. This might be accomplished by raising the dietary concentration of cereal grain. Increasing the concentration of starch in diets can lead to undesirable ruminal fermentation, and to prevent it, the partial replacement of cereal grain with low starch by-product feeds is recommended. The purpose of the present study was to compare the effect of fed two mixed di...

  18. The Benefits of Breakfast Cereal Consumption: A Systematic Review of the Evidence Base 1 2 3 4

    Williams, Peter G.

    2014-01-01

    There have been no comprehensive reviews of the relation of breakfast cereal consumption to nutrition and health. This systematic review of all articles on breakfast cereals to October 2013 in the Scopus and Medline databases identified 232 articles with outcomes related to nutrient intake, weight, diabetes, cardiovascular disease, hypertension, digestive health, dental and mental health, and cognition. Sufficient evidence was available to develop 21 summary evidence statements, ranked from A...

  19. Complete genome sequence of Pseudomonas azotoformans S4, a potential biocontrol bacterium.

    Fang, Yang; Wu, Lijuan; Chen, Guoqing; Feng, Guozhong

    2016-06-10

    Pseudomonas azotoformans is a Gram-negative bacterium and infects cereal grains, especially rice. P. azotoformans S4 from soil sample derived from Lijiang, Yunnan Province, China, appeared to be strong inhibitory activity against Fusarium fujikurio, a serious rice fungal pathogen. Here, we present the complete genome of P. azotoformans S4, which consists of 6,859,618bp with a circle chromosome, 5991 coding DNA sequences, 70 tRNA and 19 rRNA. The genomic analysis revealed that 9 candidate gene clusters are involved in the biosynthesis of secondary metabolites. PMID:27080451

  20. Cadou FORTE – a new herbicide in cereals with efficacy against grasses and dicots

    Kerlen, Dirk

    2012-03-01

    Full Text Available Cadou FORTE (flufenacet; flurtamone; diflufenican is a new cereal herbicide with efficacy against blackgrass (Alopecurus myosuroides, loose silky-bentgrass (Apera spica-venti L., annual meadow-grass (Poa annua L. and a broad spectrum of dicot weeds. Cadou FORTE can be used in winter wheat, winter barley, winter rye, winter triticale and spelt for pre and post emergence application in autumn. This publication focuses on efficacy trials from three years of autumn application with Cadou FORTE.

  1. Technical Efficiency in Organic Farming: an Application on Italian Cereal Farms using a Parametric Approach

    Madau, Fabio Albino

    2005-01-01

    A stochastic frontier production model was applied to estimate technical efficiency in a sample of Italian organic and conventional cereal farms. The main purpose was to assess which production technique revealed higher efficiency. Statistical tests on the pool sample model suggested that differences between the two cultivation methods were significant from a technological viewpoint. Separate analyses of two sub-samples (93 and 138 observations for organic and conventional farms, ...

  2. Cereal straw management: a trade-off between energy and agronomic fate

    Massimo Monteleone; Pasquale Garofalo; Anna Rita Bernadette Cammerino; Angela Libutti

    2015-01-01

    Climate change mitigation is the most important driving force for bioenergy development. Consequently, the environmental design of bioenergy value chains should address the actual savings of both primary energy demand and greenhouse gases (GHG) emissions. According to the EU Renewable Energy Directive (2009/28/EC), no direct impacts and no GHG emissions should be attributed to crop residues (like cereal straws) when they are removed from agricultural land for the purpose of bioenergy utilisat...

  3. Does advertising overcome brand loyalty? Evidence from the breakfast-cereals market

    Shum, Matthew

    2004-01-01

    In differentiated product markets where consumer preferences are characterized by brand loyalty, an important role for advertising may be to overcome brand loyalty by encouraging consumers to switch to less familiar brands. Using a scanner panel dataset of breakfast-cereal purchases, I find evidence consistent with the hypothesis that advertising counteracts the tendencies of brand loyalty toward repeat purchasing. Equivalently, advertising reduces switching costs in this market. Furthermore,...

  4. The omnivorous Tyrolean Iceman: colon contents (meat, cereals, pollen, moss and whipworm) and stable isotope analyses

    Dickson, J H; Oeggl, K; Holden, T.G.; Handley, L.L.; O'Connell, T C; Preston, T

    2000-01-01

    The contents of the colon of the Tyrolean Iceman who lived Ga. 5300 years ago include muscle fibres, cereal remains, a diversity of pollen, and most notably that of the hop hornbeam (Ostrya carpinifolia) retaining cellular contents, as well as a moss leaf (Neckera complanata) and eggs of the parasitic whipworm (Trichuris trichiura). Based almost solely on stable isotope analyses and ignoring the work on the colon contents, two recently published papers on the Iceman's diet draw ill- founded c...

  5. Ready-to-eat cereals improve nutrient, milk and fruit intake at breakfast in European adolescents

    Michels, Nathalie; De Henauw, Stefaan; BEGHIN, Laurent; Cuenca-García, Magdalena; Gonzalez-Gross, Marcela; Hallstrom, Lena; Kafatos, Anthony; Kersting, Mathilde; Manios, Yannis; Marcos, Ascensión; Molnar, Denes; Roccaldo, Romana; Santaliestra-Pasías, Alba M; Sjostrom, Michael; Reye, Béatrice

    2015-01-01

    Purpose Breakfast consumption has been recommended as part of a healthy diet. Recently, ready-to-eat cereals (RTEC) became more popular as a breakfast item. Our aim was to analyse the dietary characteristics of an RTEC breakfast in European adolescents and to compare them with other breakfast options. Methods From the European multi-centre HELENA study, two 24-h dietary recalls of 3137 adolescents were available. Food items (RTEC or bread, milk/yoghurt, fruit) and macro- and micronutrient int...

  6. Microstructure of Extruded Mixtures of Cereals and Oil Seed Processing Residues

    Salgo, A.; Torok, Sz.; Sandor, Sz.

    1989-01-01

    The utilization of valuable by-products of seed processing residues as coextrusion materials was investigated. By mixing sunflower, pumpkin, corn or rice germ presscake with cereals (wheat, corn, rice), the good protein quality of the former group might improve the biological value of the resulting coextrudates. The microstructure of such coextruded products was analysed with reference to their chemical compositions, nutritional characteristics and functional properties. As seed processin...

  7. The Value to Consumers of Health Labeling Statements on Breakfast Foods and Cereals

    Muth, Mary K.; Zhen, Chen; Taylor, Justin; Cates, Sheryl; Kosa, Katherine M.; Zorn, David; Choiniere, Conrad J.

    2009-01-01

    Food manufacturers have an incentive to include nutrient content claims, health claims, or other types of labeling statements on foods if they believe that consumers will be willing to pay more for products with specific attributes. We estimated semi-log hedonic price regressions for five breakfast bar and cereal product categories using Nielsen ScanTrack scanner data for 2004 and found that labeling statements for these foods are often associated with substantial increases in consumer willin...

  8. Occurrence of Acrylamide in breakfast cereals and biscuits available in Italy

    CAPEI, R.; PETTINI, L.; LO NOSTRO, A.; Pesavento, G

    2015-01-01

    Summary Introduction. Acrylamide, produced during thermal processing of carbohydrate-rich foods, is classified as "probably carcinogenic to humans" by the International Agency for Research on Cancer. Objective. The aim of this study was to determine acrylamide levels in biscuits and breakfast cereals considering the widespread use of these products for all ages. Method. Acrylamide determination was carried out in 56 samples by HPLC-UV technique. Results and discussion. The results showed a co...

  9. Social networks and farmer exposure to improved cereal varieties in central Tanzania

    Muange, Elijah Nzula; Schwarze, Stefan; Qaim, Matin

    2014-01-01

    This study uses probit and Poisson models to analyse the determinants of social network links for the exchange of information among 345 cereal farmers and the effects of social networks on farmer exposure to improved varieties in Central Tanzania. Results show that network links are determined by education, wealth, association membership, geographical proximity, kinship ties, community leadership role, and links to extension officers. Further, farmer networks positively affect the intensity o...

  10. Long-term organic crop rotation experiments for cereal production – yield development and dynamics

    Askegaard, Margrethe; Olesen, Jørgen E.; Rasmussen, Ilse A.

    2005-01-01

    A crop rotation experiment was established in 1996/97 at three locations representing different soil types and climates. Three factors were tested: i) crop rotation with different proportions of N2-fixing crops, ii) with and without a catch crop, and iii) with and without animal manure. A green manure crop increased yields in the following cereal crops, but at the rotational level, total yields were larger in crop rotations without a green manure crop. There were positive effects of animal ma...

  11. Chicory (Cichorium intybus L.) and cereals differently affect gut development in broiler chickens and young pigs

    Liu, Haoyu; Ivarsson, Emma; Lundh, Torbjörn; Lindberg, Jan Erik

    2013-01-01

    Dietary fiber, resistant to host-mediated digestion in the small intestine due to lack of endogenous enzymes, impacts many facets of animal health and is associated with gut development especially in young monogastrics. Furthermore, it can be used as in-feed antibiotic alternative. Chicory (Cichorium intybus L.) forage with high content of pectin (uronic acids as building blocks) is a novel class of dietary fiber that is chemically different from cereal grains (with high content of arabinoxyl...

  12. The Danish organic crop rotation experiment for cereal production 1997-2004

    Rasmussen, Ilse A.; Askegaard, Margrethe; Olesen, Jørgen E.

    2006-01-01

    In 1997 a crop rotation experiment was initiated at three sites in Denmark. The objective of the experiment was to explore the possibilities for both short-term and long-term increases in organic cereal production through manipulation of crop rotation design on different soil types. The experiment included three factors (proportion of grass-clover in the rotation, catch crops and manure application) in a randomised factorial design. The main indicators measured in the experiment were crop yie...

  13. INFLUENCE OF NITROGEN FORMS ON TILLERING, CYTOKININ TRANSLOCATION AND YIELD IN CEREAL CROP PLANTS

    Bauer, Bernhard; Bangerth, Fritz; von Wirén, Nicolaus

    2009-01-01

    Urea, ammonium and nitrate are the most important nitrogen forms employed in agricultural plant production. Although nitrate has been shown to act as a signal for metabolism and plant development in physiological studies, so far no use is made of the signalling effect of different N forms in cereal plant production. To investigate the effect of different N forms on shoot development, we performed nutrient solution experiments with spring barley and observed that shoot biomass product...

  14. Barley callus:a model system for bioengineering of starch in cereals

    Carciofi Massimiliano; Blennow Andreas; Nielsen Morten M; Holm Preben B; Hebelstrup Kim H

    2012-01-01

    Abstract Background Starch is the most important source of calories for human nutrition and the majority of it is produced by cereal farming. Starch is also used as a renewable raw material in a range of industrial sectors. It can be chemically modified to introduce new physicochemical properties. In this way starch is adapted to a variety of specific end-uses. Recombinant DNA technologies offers an alternative to starch industrial processing. The plant biosynthetic pathway can be manipulated...

  15. Ecology and Control of Cereal Cyst Nematode (Heterodera avenae) in Southern Australia

    Brown, R. H.

    1984-01-01

    The ecology and control of cereal cyst nematode in southern Australia is reviewed. The wide distribution of Heterodera avenae in Victoria and South Australia is due largely to movement of cysts by wind during dust storms. The fungus Rhizoctonia solani frequently is associated with the nematode in a disease complex in wheat, and disease symptoms are most severe on lighter or well structured soils. Crop rotations which include periods of fallow, or of nonhost crop reduce population levels of H....

  16. Weed harrowing in organically grown cereal crops avoids yield losses without reducing weed diversity

    Armengot, Laura; José-María, Laura; Chamorro, Lourdes; Sans, Francesc

    2013-01-01

    This report shows that weed harrowing in organic cereal fields is an efficient alternative to herbicides since weed harrowing does not reduce yields compared to weed-free plots. Arable weeds provide resources and habitat to many organisms. However, weeds are the most important constraint to crop production. Indeed, the potential crop losses of the eight major crops due to weed–crop competition amount to about 30 %. New ways of food production are needed due to the current severe biodiversity ...

  17. Review of input and output policies for cereals production in Pakistan:

    Salam, Abdul

    2012-01-01

    The marketing of farm inputs and outputs has become a major problem for farmers in Pakistan. Farm input supplies are irregular, characterized by shortages and high prices at critical times. This report reviews the input and output policies for cereals implemented in Pakistan during the period 1996–2010. Pakistan has a long and varied history of intervening in farm input and output markets, going back decades before the period under review. Most significantly, in the wake of economic reforms...

  18. Long-term soil organic carbon changes in cereal and ley rotations: model testing

    Kynding Borgen, Signe; Dörsch, Peter; Krogstad, Tore; Azzaroli Bleken, Marina

    2015-04-01

    Reliable modeling of soil organic carbon (SOC) dynamics in agroecosystems is crucial to define mitigation strategies related to crop management on the farm scale as well as the regional scale. International climate agreements and national political decisions rely to a large extent on the National Greenhouse gas Inventory Reports that are submitted annually to the UNFCCC. However, lower tier methods are used to estimate SOC changes on cropland in most country reports. The application of mechanistic models in national greenhouse gas inventory estimation requires proper model testing against measurements in order to verify the estimated emissions. Few long-term field experiments measuring SOC stock changes have been conducted in Norway. We evaluate the performance of the Introductory Carbon Balance Model (ICBM) in simulating SOC changes over 60 years in a field experiment conducted in Ås from 1953-2013. The site is located in south-eastern Norway, on the boarder of the boreal and temperate climate zone, where the majority of the country's grain production occurs. The field trial consisted of four rotations: I) continuous cereal, II) cereal + row crops, III) 2 years of ley + 4 years of cereal, IV) 4 years of ley + 2 years of cereal, and four treatments per rotation: a) low NPK, b) high NPK, c) low NPK + FYM, and d) straw (on rotations I and II) or high NPK + FYM (on rotations III and IV). The annual external modifying factor of the decomposition rate was calculated based on daily minimum and maximum temperature, precipitation, relative humidity, wind speed, and net radiation, and adjusted for soil type and crop management according to default ICBM calibration. We present results of simulated C changes for the long term plots and explore options to improve parameter calibration. Finally, we provide suggestions for how problems regarding model verification can be handled with when applying the model on a national scale for inventory reporting.

  19. Impetus for sowing and the beginning of agriculture: Ground collecting of wild cereals

    Kislev, Mordechai E.; Weiss, Ehud; Hartmann, Anat

    2004-01-01

    The Agricultural Revolution in Western Asia, which took place some 11,000 years ago, was a turning point in human history [Childe, V. G. (1952) New Light on the Most Ancient East (Routledge & Kegan Paul, London)]. In investigating the cultural processes that could have led from gathering to intentional cultivation, various authors have discussed and tested wild cereal harvesting techniques. Some argue that Near Eastern foragers gathered grains by means of sickle harvesting, uprooting, pluckin...

  20. Food safety of cereals: a chain wide approach to reduce Fusarium mycotoxins

    Scholten, O.E.; Ruckenbauer, P.; Visconti, A.; Osenburggen, W.A.; Nijs, den, J.C.M.

    2002-01-01

    Fusarium head blight (FHB) in wheat and barley and Fusarium ear rot in maize is caused by several Fusarium species. The disease reduces the quality of the seed since several of these fungi produce mycotoxins. From a food safety point of view, consumption of mycotoxin-infected cereals is dangerous as it threatens the health of men and animals. This project looked at a chain-wide approach to reduce Fusarium Mycotoxins.