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Sample records for aberration correction algorithms

  1. Aberration Corrected Emittance Exchange

    Nanni, Emilio A

    2015-01-01

    Full exploitation of emittance exchange (EEX) requires aberration-free performance of a complex imaging system including active radio-frequency (RF) elements which can add temporal distortions. We investigate the performance of an EEX line where the exchange occurs between two dimensions with normalized emittances which differ by orders of magnitude. The transverse emittance is exchanged into the longitudinal dimension using a double dog-leg emittance exchange setup with a 5 cell RF deflector cavity. Aberration correction is performed on the four most dominant aberrations. These include temporal aberrations that are corrected with higher order magnetic optical elements located where longitudinal and transverse emittance are coupled. We demonstrate aberration-free performance of emittances differing by 4 orders of magnitude, i.e. an initial transverse emittance of $\\epsilon_x=1$ pm-rad is exchanged with a longitudinal emittance of $\\epsilon_z=10$ nm-rad.

  2. Aberration corrected Lorentz scanning transmission electron microscopy

    We present results from an aberration corrected scanning transmission electron microscope which has been customised for high resolution quantitative Lorentz microscopy with the sample located in a magnetic field free or low field environment. We discuss the innovations in microscope instrumentation and additional hardware that underpin the imaging improvements in resolution and detection with a focus on developments in differential phase contrast microscopy. Examples from materials possessing nanometre scale variations in magnetisation illustrate the potential for aberration corrected Lorentz imaging as a tool to further our understanding of magnetism on this lengthscale. - Highlights: • Demonstration of nanometre scale resolution in magnetic field free environment using aberration correction in the scanning transmission electron microscope (STEM). • Implementation of differential phase contrast mode of Lorentz microscopy in aberration corrected STEM with improved sensitivity. • Quantitative imaging of magnetic induction of nanostructures in amorphous and cross-section samples

  3. Catadioptric aberration correction in cathode lens microscopy

    Tromp, R.M. [IBM T.J. Watson Research Center, PO Box 218, Yorktown Heights, NY 10598 (United States); Kamerlingh Onnes Laboratory, Leiden Institute of Physics, Niels Bohrweg 2, 2333 CA Leiden (Netherlands)

    2015-04-15

    In this paper I briefly review the use of electrostatic electron mirrors to correct the aberrations of the cathode lens objective lens in low energy electron microscope (LEEM) and photo electron emission microscope (PEEM) instruments. These catadioptric systems, combining electrostatic lens elements with a reflecting mirror, offer a compact solution, allowing simultaneous and independent correction of both spherical and chromatic aberrations. A comparison with catadioptric systems in light optics informs our understanding of the working principles behind aberration correction with electron mirrors, and may point the way to further improvements in the latter. With additional developments in detector technology, 1 nm spatial resolution in LEEM appears to be within reach. - Highlights: • The use of electron mirrors for aberration correction in LEEM/PEEM is reviewed. • A comparison is made with similar systems in light optics. • Conditions for 1 nm spatial resolution are discussed.

  4. Catadioptric aberration correction in cathode lens microscopy

    In this paper I briefly review the use of electrostatic electron mirrors to correct the aberrations of the cathode lens objective lens in low energy electron microscope (LEEM) and photo electron emission microscope (PEEM) instruments. These catadioptric systems, combining electrostatic lens elements with a reflecting mirror, offer a compact solution, allowing simultaneous and independent correction of both spherical and chromatic aberrations. A comparison with catadioptric systems in light optics informs our understanding of the working principles behind aberration correction with electron mirrors, and may point the way to further improvements in the latter. With additional developments in detector technology, 1 nm spatial resolution in LEEM appears to be within reach. - Highlights: • The use of electron mirrors for aberration correction in LEEM/PEEM is reviewed. • A comparison is made with similar systems in light optics. • Conditions for 1 nm spatial resolution are discussed

  5. Optical advantages of astigmatic aberration corrected heliostats

    van Rooyen, De Wet; Schöttl, Peter; Bern, Gregor; Heimsath, Anna; Nitz, Peter

    2016-05-01

    Astigmatic aberration corrected heliostats adapt their shape in dependence of the incidence angle of the sun on the heliostat. Simulations show that this optical correction leads to a higher concentration ratio at the target and thus in a decrease in required receiver aperture in particular for smaller heliostat fields.

  6. Correcting the Chromatic Aberration in Barrel Distortion of Endoscopic Images

    Y. M. Harry Ng

    2003-04-01

    Full Text Available Modern endoscopes offer physicians a wide-angle field of view (FOV for minimally invasive therapies. However, the high level of barrel distortion may prevent accurate perception of image. Fortunately, this kind of distortion may be corrected by digital image processing. In this paper we investigate the chromatic aberrations in the barrel distortion of endoscopic images. In the past, chromatic aberration in endoscopes is corrected by achromatic lenses or active lens control. In contrast, we take a computational approach by modifying the concept of image warping and the existing barrel distortion correction algorithm to tackle the chromatic aberration problem. In addition, an error function for the determination of the level of centroid coincidence is proposed. Simulation and experimental results confirm the effectiveness of our method.

  7. The correction of electron lens aberrations

    Hawkes, P.W., E-mail: peter.hawkes@cemes.fr

    2015-09-15

    The progress of electron lens aberration correction from about 1990 onwards is chronicled. Reasonably complete lists of publications on this and related topics are appended. A present for Max Haider and Ondrej Krivanek in the year of their 65th birthdays. By a happy coincidence, this review was completed in the year that both Max Haider and Ondrej Krivanek reached the age of 65. It is a pleasure to dedicate it to the two leading actors in the saga of aberration corrector design and construction. They would both wish to associate their colleagues with such a tribute but it is the names of Haider and Krivanek (not forgetting Joachim Zach) that will remain in the annals of electron optics, next to that of Harald Rose. I am proud to know that both regard me as a friend as well as a colleague. - Highlights: • Geometrical aberration correction. • Chromatic aberration correction. • 50 pm resolution. • High-resolution electron energy-loss spectroscopy. • Extensive bibliographies.

  8. The correction of electron lens aberrations

    The progress of electron lens aberration correction from about 1990 onwards is chronicled. Reasonably complete lists of publications on this and related topics are appended. A present for Max Haider and Ondrej Krivanek in the year of their 65th birthdays. By a happy coincidence, this review was completed in the year that both Max Haider and Ondrej Krivanek reached the age of 65. It is a pleasure to dedicate it to the two leading actors in the saga of aberration corrector design and construction. They would both wish to associate their colleagues with such a tribute but it is the names of Haider and Krivanek (not forgetting Joachim Zach) that will remain in the annals of electron optics, next to that of Harald Rose. I am proud to know that both regard me as a friend as well as a colleague. - Highlights: • Geometrical aberration correction. • Chromatic aberration correction. • 50 pm resolution. • High-resolution electron energy-loss spectroscopy. • Extensive bibliographies

  9. The correction of electron lens aberrations.

    Hawkes, P W

    2015-09-01

    The progress of electron lens aberration correction from about 1990 onwards is chronicled. Reasonably complete lists of publications on this and related topics are appended. A present for Max Haider and Ondrej Krivanek in the year of their 65th birthdays. By a happy coincidence, this review was completed in the year that both Max Haider and Ondrej Krivanek reached the age of 65. It is a pleasure to dedicate it to the two leading actors in the saga of aberration corrector design and construction. They would both wish to associate their colleagues with such a tribute but it is the names of Haider and Krivanek (not forgetting Joachim Zach) that will remain in the annals of electron optics, next to that of Harald Rose. I am proud to know that both regard me as a friend as well as a colleague. PMID:26025209

  10. Temperature Corrected Bootstrap Algorithm

    Comiso, Joey C.; Zwally, H. Jay

    1997-01-01

    A temperature corrected Bootstrap Algorithm has been developed using Nimbus-7 Scanning Multichannel Microwave Radiometer data in preparation to the upcoming AMSR instrument aboard ADEOS and EOS-PM. The procedure first calculates the effective surface emissivity using emissivities of ice and water at 6 GHz and a mixing formulation that utilizes ice concentrations derived using the current Bootstrap algorithm but using brightness temperatures from 6 GHz and 37 GHz channels. These effective emissivities are then used to calculate surface ice which in turn are used to convert the 18 GHz and 37 GHz brightness temperatures to emissivities. Ice concentrations are then derived using the same technique as with the Bootstrap algorithm but using emissivities instead of brightness temperatures. The results show significant improvement in the area where ice temperature is expected to vary considerably such as near the continental areas in the Antarctic, where the ice temperature is colder than average, and in marginal ice zones.

  11. Isoplanatic patch size for aberration correction in ultrasonic imaging

    Pilkington, Wayne C.

    Methods and experimental results are described for determination of the region size in an aberrating medium over which a single set of aberration estimates can achieve satisfactory b-scan resolution ( i.e., the isoplanatic patch) using time-shift compensation for aberration correction of ultrasonic transmit and receive beams. Based on twenty percent allowable increases in the -12 dB width of the receive or transmit beam focus using cross-correction compared to self-correction, the isoplanatic patch sizes were found to between 3 and 5 millimeters laterally for a linearly-scanned transducer, and at least 12 millimeters axially for a target distance of 55 millimeters and aberration comparable to human abdominal wall. These sizes depend on the aberration severity, reference site axial position, and allowable resolution degradation with cross-correction. The lateral isoplanatic patch size of a linearly scanned image can be more than doubled to match that of a beam-steered acquisition using aberration estimate position matching relative to the tissue surface. Further expansion of the lateral isoplanatic patch size by an additional 50 to 100 percent for both scanning methods is also shown through propagation path matched cross-correction mapping of aberration estimates. The specific mapping required to achieve the best propagation path match depends on the axial distribution of the aberrating structures, the focal depth being imaged, and the cross-correction distance. The effectiveness of alternate methods to derive propagation path matching maps with and without a priori knowledge of aberrator spatial distribution are contrasted; and a means to dynamically adjust correction maps to maximize isoplanatic patch sizes is proposed and verified. Lateral cross-correction mapping and the map changes required for each cross-correction distance can all be implemented with simple shifting of aberration estimates within the transducer aperture. Therefore, use of optimally mapped

  12. On-line correction of aberrations in particle spectrographs

    A new method is presented that allows the reconstruction of trajectories and the on-line correction of residual aberrations that limit the resolution of particle spectrographs. Using a computed or fitted high order transfer map that describes the uncorrected aberrations of the spectrograph under consideration, it is possible to determine a pseudo transfer map that allows the computation of the corrected data of interest as well as the reconstructed trajectories in terms of position measurements in two planes near the focal plane. The technique is only limited by the accuracy of the position measurements and the accuracy of the transfer map. In practice the method can be expressed as an inversion of a pseudo transfer map and implemented in the differential algebraic framework. The method will be used to correct residual high aberrations in the S800 spectrograph which is under construction at the National Superconducting Cyclotron Laboratory at Michigan State University

  13. Intrinsic Instability of Aberration-Corrected Electron Microscopes

    Schramm, S M; Tromp, R M

    2012-01-01

    Aberration-corrected microscopes with sub-atomic resolution will impact broad areas of science and technology. However, the experimentally observed lifetime of the corrected state is just a few minutes. Here we show that the corrected state is intrinsically unstable; the higher its quality, the more unstable it is. Analyzing the Contrast Transfer Function near optimum correction, we define an 'instability budget' which allows a rational trade-off between resolution and stability. Unless control systems are developed to overcome these challenges, intrinsic instability poses a fundamental limit to the resolution practically achievable in the electron microscope.

  14. Aberration Corrected Photoemission Electron Microscopy with Photonics Applications

    Fitzgerald, Joseph P. S.

    Photoemission electron microscopy (PEEM) uses photoelectrons excited from material surfaces by incident photons to probe the interaction of light with surfaces with nanometer-scale resolution. The point resolution of PEEM images is strongly limited by spherical and chromatic aberration. Image aberrations primarily originate from the acceleration of photoelectrons and imaging with the objective lens and vary strongly in magnitude with specimen emission characteristics. Spherical and chromatic aberration can be corrected with an electrostatic mirror, and here I develop a triode mirror with hyperbolic geometry that has two adjacent, field-adjustable regions. I present analytic and numerical models of the mirror and show that the optical properties agree to within a few percent. When this mirror is coupled with an electron lens, it can provide a large dynamic range of correction and the coefficients of spherical and chromatic aberration can be varied independently. I report on efforts to realize a triode mirror corrector, including design, characterization, and alignment in our microscope at Portland State University (PSU). PEEM may be used to investigate optically active nanostructures, and we show that photoelectron emission yields can be identified with diffraction, surface plasmons, and dielectric waveguiding. Furthermore, we find that photoelectron micrographs of nanostructured metal and dielectric structures correlate with electromagnetic field calculations. We conclude that photoemission is highly spatially sensitive to the electromagnetic field intensity, allowing the direct visualization of the interaction of light with material surfaces at nanometer scales and over a wide range of incident light frequencies.

  15. Adaptive temporal and wavefront aberration correction for ultrafast lasers with a membrane deformable mirror

    Sherman, Leah Bruner

    Two adaptive optic systems for correction of either temporal phase error and wavefront errors for ultrafast pulses are demonstrated. These systems consists of a computer controlled micromachined membrane deformable mirror (MMDM) and a genetic learning algorithm (GA). Nonlinear excitation such as two-photon fluorescence or second harmonic generation are used as feedback to the GA to determine the appropriate correction to apply to the mirror. Two MMDMs are used, a 30 x 8 mm, 39 actuator linear MMDM for pulse-shaping applications and a 15 mm diameter, 37 actuator wavefront MMDM. Linear pre-compensation of self-phase modulation (SPM) was experimentally demonstrated utilizing the linear MMDM in a linear pulse-shaper for ultrafast pulses. The nonlinear nature of SPM makes arbitrary polynomial compensation necessary. Pre-compensation of SPM generated in an optical fiber by a 10 fs pulse reduced the pulse from 30fs to 20fs. We demonstrates adaptive correction with the wavefront MMDM by corrected for coma and astigmatism in a reflective multiphoton scanning microscope. An f1, parabola produces a very tight focus with no aberration when it is perfectly aligned. However, when beam scanning is used for two-dimensional imaging the image is severely aberrated. The MMDM and the GA are able to find the best possible wavefront for aberration correction for each scanning position. The horizontal scanning range was increased from 60 mum without the adaptive correction to 170 mum, ≈3 times the uncorrected scanning range, and the vertical scanning range was increased by a comparable amount. This resulted in an increase in scanning area of 9 times. The wavefront MMDM was also used for adaptive correction of spherical aberration from focusing from air, deep into a water-based sample. This depth-based aberration results from an index of refraction mismatch between the sample and the immersion medium of the objective and occurs regardless of beam scanning or sample scanning. By

  16. Optimizing chromatic aberration calibration using a novel genetic algorithm

    Fang, Yi-Chin; Liu, Tung-Kuan; MacDonald, John; Chou, Jyh-Horng; Wu, Bo-Wen; Tsai, Hsien-Lin; Chang, En-Hao

    2006-10-01

    Advances in digitalized image optics has increased the importance of chromatic aberration. The axial and lateral chromatic aberrations of an optical lens depends on the choice of optical glass. Based on statistics from glass companies worldwide, more than 300 optical glasses have been developed for commercial purposes. However, the complexity of optical systems makes it extremely difficult to obtain the right solution to eliminate small chromatic aberration. Even the damped least-squares technique, which is a ray-tracing-based method, is limited owing to its inability to identify an enhanced optical system configuration. Alternatively, this study instead attempts to eliminate even negligible axial and lateral colour aberration by using algorithms involving the theories of geometric optics in triplet lens, binary and real encoding, multiple dynamic crossover and random gene mutation techniques.

  17. Adaptive, spatially-varying aberration correction for real-time holographic projectors.

    Kaczorowski, Andrzej; Gordon, George S D; Wilkinson, Timothy D

    2016-07-11

    A method of generating an aberration- and distortion-free wide-angle holographically projected image in real time is presented. The target projector is first calibrated using an automated adaptive-optical mechanism. The calibration parameters are then fed into the hologram generation program, which applies a novel piece-wise aberration correction algorithm. The method is found to offer hologram generation times up to three orders of magnitude faster than the standard method. A projection of an aberration- and distortion-free image with a field of view of 90x45 degrees is demonstrated. The implementation on a mid-range GPU achieves high resolution at a frame rate up to 12fps. The presented methods are automated and can be performed on any holographic projector. PMID:27410846

  18. Correction for polychromatic aberration in computed tomography images

    A method and apparatus for correcting a computed tomography image for polychromatic aberration caused by the non-linear interaction (i.e. the energy dependent attenuation characteristics) of different body constituents, such as bone and soft tissue, with a polychromatic X-ray beam are described in detail. An initial image is conventionally computed from path measurements made as source and detector assembly scan a body section. In the improvement, each image element of the initial computed image representing attenuation is recorded in a store and is compared with two thresholds, one representing bone and the other soft tissue. Depending on the element value relative to the thresholds, a proportion of the respective constituent is allocated to that element location and corresponding bone and soft tissue projections are determined and stored. An error projection generator calculates projections of polychromatic aberration errors in the raw image data from recalled bone and tissue projections using a multidimensional polynomial function which approximates the non-linear interaction involved. After filtering, these are supplied to an image reconstruction computer to compute image element correction values which are subtracted from raw image element values to provide a corrected reconstructed image for display. (author)

  19. Transcranial phase aberration correction using beam simulations and MR-ARFI

    Purpose: Transcranial magnetic resonance-guided focused ultrasound surgery is a noninvasive technique for causing selective tissue necrosis. Variations in density, thickness, and shape of the skull cause aberrations in the location and shape of the focal zone. In this paper, the authors propose a hybrid simulation-MR-ARFI technique to achieve aberration correction for transcranial MR-guided focused ultrasound surgery. The technique uses ultrasound beam propagation simulations with MR Acoustic Radiation Force Imaging (MR-ARFI) to correct skull-caused phase aberrations. Methods: Skull-based numerical aberrations were obtained from a MR-guided focused ultrasound patient treatment and were added to all elements of the InSightec conformal bone focused ultrasound surgery transducer during transmission. In the first experiment, the 1024 aberrations derived from a human skull were condensed into 16 aberrations by averaging over the transducer area of 64 elements. In the second experiment, all 1024 aberrations were applied to the transducer. The aberrated MR-ARFI images were used in the hybrid simulation-MR-ARFI technique to find 16 estimated aberrations. These estimated aberrations were subtracted from the original aberrations to result in the corrected images. Each aberration experiment (16-aberration and 1024-aberration) was repeated three times. Results: The corrected MR-ARFI image was compared to the aberrated image and the ideal image (image with zero aberrations) for each experiment. The hybrid simulation-MR-ARFI technique resulted in an average increase in focal MR-ARFI phase of 44% for the 16-aberration case and 52% for the 1024-aberration case, and recovered 83% and 39% of the ideal MR-ARFI phase for the 16-aberrations and 1024-aberration case, respectively. Conclusions: Using one MR-ARFI image and noa priori information about the applied phase aberrations, the hybrid simulation-MR-ARFI technique improved the maximum MR-ARFI phase of the beam's focus

  20. Transcranial phase aberration correction using beam simulations and MR-ARFI

    Vyas, Urvi, E-mail: urvi.vyas@gmail.com; Kaye, Elena; Pauly, Kim Butts [Department of Radiology, Stanford University, Stanford, California 94305 (United States)

    2014-03-15

    Purpose: Transcranial magnetic resonance-guided focused ultrasound surgery is a noninvasive technique for causing selective tissue necrosis. Variations in density, thickness, and shape of the skull cause aberrations in the location and shape of the focal zone. In this paper, the authors propose a hybrid simulation-MR-ARFI technique to achieve aberration correction for transcranial MR-guided focused ultrasound surgery. The technique uses ultrasound beam propagation simulations with MR Acoustic Radiation Force Imaging (MR-ARFI) to correct skull-caused phase aberrations. Methods: Skull-based numerical aberrations were obtained from a MR-guided focused ultrasound patient treatment and were added to all elements of the InSightec conformal bone focused ultrasound surgery transducer during transmission. In the first experiment, the 1024 aberrations derived from a human skull were condensed into 16 aberrations by averaging over the transducer area of 64 elements. In the second experiment, all 1024 aberrations were applied to the transducer. The aberrated MR-ARFI images were used in the hybrid simulation-MR-ARFI technique to find 16 estimated aberrations. These estimated aberrations were subtracted from the original aberrations to result in the corrected images. Each aberration experiment (16-aberration and 1024-aberration) was repeated three times. Results: The corrected MR-ARFI image was compared to the aberrated image and the ideal image (image with zero aberrations) for each experiment. The hybrid simulation-MR-ARFI technique resulted in an average increase in focal MR-ARFI phase of 44% for the 16-aberration case and 52% for the 1024-aberration case, and recovered 83% and 39% of the ideal MR-ARFI phase for the 16-aberrations and 1024-aberration case, respectively. Conclusions: Using one MR-ARFI image and noa priori information about the applied phase aberrations, the hybrid simulation-MR-ARFI technique improved the maximum MR-ARFI phase of the beam's focus.

  1. New Views of Materials through Aberration-Corrected STEM

    Pennycook, Stephen J [ORNL; Chisholm, Matthew F [ORNL; Lupini, Andrew R [ORNL; Varela del Arco, Maria [ORNL; Borisevich, Albina Y [ORNL; Pantelides, Sokrates T. [Vanderbilt University; van Benthem, Klaus [ORNL; Shibata, Naoya [University of Tokyo, Tokyo, Japan; Molina Rubio, Sergio I [ORNL; Rashkeev, Sergey [ORNL

    2009-01-01

    The successful correction of lens aberrations in scanning transmission electron microscopy has allowed an improvement in resolution by a factor of two in just a few years. The benefits for materials research are far greater than a factor of two might imply, because enhanced resolution also brings enhanced image contrast, and therefore a vast increase in sensitivity to single atoms, both for imaging and electron energy loss spectroscopy. In addition, aberration correction enables simultaneous, aberrationcorrected, Z-contrast and phase contrast imaging, and brings a depth resolution at the nanometer level. It becomes possible to focus directly on features at different depths in the specimen thickness, and three-dimensional information can be extracted with single atom sensitivity. In conjunction with density functional and elasticity theory, these advances provide a new level of insight into the atomistic origins of materials properties. Several examples are discussed that illustrate the potential for applications, including the segregation of rare earth elements to grain boundaries in Si3N4 ceramics, the quantitative analysis of strain-induced growth phenomena in semiconductor quantum wells, the explanation of the enhanced thermal stability of La-doped -alumina as a catalyst support, and the origin of the remarkable catalytic activity of Au nanoparticles.

  2. High order aberration and straylight evaluation after cataract surgery with implantation of an aspheric,aberration correcting monofocal intraocular lens

    Florian; T; A; Kretz; Tamer; Tandogan; Ramin; Khoramnia; Gerd; U; Auffarth

    2015-01-01

    ·AIM: To evaluate the quality of vision in respect to high order aberrations and straylight perception after implantation of an aspheric, aberration correcting,monofocal intraocular lens(IOL).·METHODS: Twenty-one patients(34 eyes) aged 50 to83 y underwent cataract surgery with implantation of an aspheric, aberration correcting IOL(Tecnis ZCB00,Abbott Medical Optics). Three months after surgery they were examined for uncorrected(UDVA) and corrected distance visual acuity(CDVA), contrast sensitivity(CS)under photopic and mesopic conditions with and without glare source, ocular high order aberrations(HOA, Zywave II) and retinal straylight(C-Quant).· RESULTS: Postoperatively, patients achieved a postoperative CDVA of 0.0 log MAR or better in 97.1% of eyes. Mean values of high order abberations were +0.02±0.27(primary coma components) and-0.04 ±0.16(spherical aberration term). Straylight values of the C-Quant were 1.35±0.44 log which is within normal range of age matched phakic patients. The CS measurements under mesopic and photopic conditions in combination with and without glare did not show any statistical significance in the patient group observed(P ≥0.28).· CONCLUSION: The implantation of an aspherical aberration correcting monofocal IOL after cataractsurgery resulted in very low residual higher order aberration(HOA) and normal straylight.

  3. EVALUATION OF CORRECTION METHODS OF CHROMATIC ABERRATION IN DIGITAL CAMERA IMAGES

    Matsuoka, R; Asonuma, K.; Takahashi, G; Danjo, T.; Hirana, K.

    2012-01-01

    This paper reports an experiment conducted to evaluate correction methods of chromatic aberrations in images acquired by a nonmetric digital camera. The chromatic aberration correction methods evaluated in the experiment are classified into two kinds. One is the method to correct image coordinates by using camera calibration results of color-separated images. The other is the method based on the assumption that the magnitude of chromatic aberrations can be expressed by a function of ...

  4. Image transfer with spatial coherence for aberration corrected transmission electron microscopes.

    Hosokawa, Fumio; Sawada, Hidetaka; Shinkawa, Takao; Sannomiya, Takumi

    2016-08-01

    The formula of spatial coherence involving an aberration up to six-fold astigmatism is derived for aberration-corrected transmission electron microscopy. Transfer functions for linear imaging are calculated using the newly derived formula with several residual aberrations. Depending on the symmetry and origin of an aberration, the calculated transfer function shows characteristic symmetries. The aberrations that originate from the field's components, having uniformity along the z direction, namely, the n-fold astigmatism, show rotational symmetric damping of the coherence. The aberrations that originate from the field's derivatives with respect to z, such as coma, star, and three lobe, show non-rotational symmetric damping. It is confirmed that the odd-symmetric wave aberrations have influences on the attenuation of an image via spatial coherence. Examples of image simulations of haemoglobin and Si [211] are shown by using the spatial coherence for an aberration-corrected electron microscope. PMID:27155359

  5. Aberration-corrected STEM and EELS of semiconducting nanostructures

    We review some applications of aberration–corrected electron microscopy for the detailed characterization of semiconducting nanostructures using a combination of high-angle annular dark-field scanning transmission electron microscopy and electron energy loss spectroscopy. The study of self-assembled quantum wires shows that it is possible to determine the composition of the nanostructures with better than 1 nm resolution down to the atomic level while the contrast in the high-angle annular dark-field images is used to determine the presence of wetting layers separating quantum wires and the strain field arising from the local compositional changes. The local measurements of energy loss spectra demonstrate the shift of plasmon peaks consistent with the changes in lattice parameters. High-angle annular dark-field images are also used to study the contrast in GaSb thin films deposited and study the presence of anti-phase domain boundaries. These examples show that aberration-corrected microscopy combined with electron energy loss spectroscopy provide not only enhanced resolution but also increased sensitivity to atomic site compositional changes.

  6. In vivo transcostal histotripsy therapy without aberration correction

    This study investigates the in vivo therapeutic capabilities of transcostal histotripsy without using aberration correction mechanisms and its thermal impact on overlying tissues. Non-invasive liver treatments were conducted in eight pigs, with four lesions generated through transcostal windows with full ribcage obstruction and four lesions created through transabdominal windows without rib coverage. Treatments were performed by a 750 kHz focused transducer using 5 cycle pulses at 200 Hz PRF, with estimated in situ peak negative pressures of 13–17 MPa. Temperatures on overlying tissues including the ribs were measured with needle thermocouples inserted superficially beneath the skin. Treatments of approximately 40 min were applied, allowing overlying tissue temperatures to reach saturation. Lesions yielded statistically comparable ablation volumes of 3.6 ± 1.7 cm3 and 4.5 ± 2.0 cm3 in transcostal and transabdominal treatments, respectively. The average temperature increase observed in transcostal treatments was 3.9 ± 2.1 °C, while transabdominal treatments showed an increase of 1.7 ± 1.3 °C. No damage was seen on the ribcage or other overlying tissues. These results indicate that histotripsy can achieve effective treatment through the ribcage in vivo without requiring correction mechanisms, while inducing no substantial thermal effects or damage to overlying tissues. Such capabilities could benefit several non-invasive therapy applications involving transcostal treatment windows. (paper)

  7. Smart microscope: an adaptive optics learning system for aberration correction in multiphoton confocal microscopy.

    Albert, O; Sherman, L; Mourou, G; Norris, T B; Vdovin, G

    2000-01-01

    Off-axis aberrations in a beam-scanning multiphoton confocal microscope are corrected with a deformable mirror. The optimal mirror shape for each pixel is determined by a genetic learning algorithm, in which the second-harmonic or two-photon fluorescence signal from a reference sample is maximized. The speed of the convergence is improved by use of a Zernike polynomial basis for the deformable mirror shape. This adaptive optical correction scheme is implemented in an all-reflective system by use of extremely short (10-fs) optical pulses, and it is shown that the scanning area of an f:1 off-axis parabola can be increased by nine times with this technique. PMID:18059779

  8. MULTISCALE GUIDED DEBLURRING: CHROMATIC ABERRATION CORRECTION IN COLOR AND NEAR-INFRARED IMAGING

    Sadeghipoor Kermani, Zahra; Lu, Yue; Mendez, Erick; Süsstrunk, Sabine

    2015-01-01

    Chromatic aberration, caused by photographic lens imperfections, results in the image of only one spectral channel being sharp, while the other channels are blurred depending on their wavelengths difference with the sharp channel. We study chromatic aberration for a system that jointly records color and near-infrared (NIR) images on a single sensor. Chromatic aberration in such a system leads to a blurred NIR image when the color image is in-focus and sharp. We propose an algorithm that deblu...

  9. Brief history of the Cambridge STEM aberration correction project and its progeny

    We provide a brief history of the project to correct the spherical aberration of the scanning transmission electron microscope (STEM) that started in Cambridge (UK) and continued in Kirkland (WA, USA), Yorktown Heights (NY, USA), and other places. We describe the project in the full context of other aberration correction research and related work, partly in response to the incomplete context presented in the paper “In quest of perfection in electron optics: A biographical sketch of Harald Rose on the occasion of his 80th birthday”, recently published in Ultramicroscopy. - Highlights: • We provide a brief history of the Cambridge project to correct the spherical aberration of the scanning transmission electron microscope (STEM). • We describe the project in the full context of other aberration correction work and related research. • We summarize our corrector development work that followed the Cambridge project, and which was the first to reach higher spatial resolution than any non-corrected electron microscope

  10. Brief history of the Cambridge STEM aberration correction project and its progeny

    Brown, L. Michael [Cavendish Laboratory, University of Cambridge, J.J. Thomson Avenue, Cambridge CB3 0HE (United Kingdom); Batson, Philip E. [Institute for Advanced Materials, Devices and Nanotechnology, Rutgers University, Piscataway, NJ 08854 (United States); Department of Physics, Rutgers University, Piscataway, NJ 08854 (United States); Department of Materials Science, Rutgers University, Piscataway, NJ 08854 (United States); Dellby, Niklas [Nion Company, 11515 NE 118th Street, Kirkland, WA 98034 (United States); Krivanek, Ondrej L. [Nion Company, 11515 NE 118th Street, Kirkland, WA 98034 (United States); Department of Physics, Arizona State University, Tempe, AZ 85287 (United States)

    2015-10-15

    We provide a brief history of the project to correct the spherical aberration of the scanning transmission electron microscope (STEM) that started in Cambridge (UK) and continued in Kirkland (WA, USA), Yorktown Heights (NY, USA), and other places. We describe the project in the full context of other aberration correction research and related work, partly in response to the incomplete context presented in the paper “In quest of perfection in electron optics: A biographical sketch of Harald Rose on the occasion of his 80th birthday”, recently published in Ultramicroscopy. - Highlights: • We provide a brief history of the Cambridge project to correct the spherical aberration of the scanning transmission electron microscope (STEM). • We describe the project in the full context of other aberration correction work and related research. • We summarize our corrector development work that followed the Cambridge project, and which was the first to reach higher spatial resolution than any non-corrected electron microscope.

  11. Correcting the wavefront aberration of membrane mirror based on liquid crystal spatial light modulator

    Yang, Bin; Wei, Yin; Chen, Xinhua; Tang, Minxue

    2014-11-01

    Membrane mirror with flexible polymer film substrate is a new-concept ultra lightweight mirror for space applications. Compared with traditional mirrors, membrane mirror has the advantages of lightweight, folding and deployable, low cost and etc. Due to the surface shape of flexible membrane mirror is easy to deviate from the design surface shape, it will bring wavefront aberration to the optical system. In order to solve this problem, a method of membrane mirror wavefront aberration correction based on the liquid crystal spatial light modulator (LCSLM) will be studied in this paper. The wavefront aberration correction principle of LCSLM is described and the phase modulation property of a LCSLM is measured and analyzed firstly. Then the membrane mirror wavefront aberration correction system is designed and established according to the optical properties of a membrane mirror. The LCSLM and a Hartmann-Shack sensor are used as a wavefront corrector and a wavefront detector, respectively. The detected wavefront aberration is calculated and converted into voltage value on LCSLM for the mirror wavefront aberration correction by programming in Matlab. When in experiment, the wavefront aberration of a glass plane mirror with a diameter of 70 mm is measured and corrected for verifying the feasibility of the experiment system and the correctness of the program. The PV value and RMS value of distorted wavefront are reduced and near diffraction limited optical performance is achieved. On this basis, the wavefront aberration of the aperture center Φ25 mm in a membrane mirror with a diameter of 200 mm is corrected and the errors are analyzed. It provides a means of correcting the wavefront aberration of membrane mirror.

  12. Correction of chromatic aberrations at television registration of image through protective viewing systems

    Kulyas, Oleg L.; Nikitin, Konstantin A.

    2016-03-01

    Ways of chromatic aberration in images are examined and analyzed which are generated at television supervision through protective glasses of a considerable thickness. The results of experimental check up of the given method of correction is introduced and described.

  13. Correction of monochromatic aberrations in human eyes - report on work in progress

    In the excimer laser photorefractive keratectomy the laser removes tissues across the anterior corneal surface. The result is a change in the anterior corneal curvature which is used to correct ocular image errors such as myopia and astigmatism. Unfortunately, there are additional aberrations as higher order coma-like and spherical aberration-like image errors limiting the visual acuity. Actually we are investigating how to fit the excimer laser photorefractive ablation profiles for correction of myopia and astigmatism to those for minimizing higher order coma and spherical aberration. Our approach is an aberrometry-guided corneal refractive surgery using a scanning spot ArF excimer laser. (author)

  14. AO-OCT for in vivo mouse retinal imaging: Application of adaptive lens in wavefornt sensorless aberration correction

    Bonora, Stefano; Jian, Yifan; Pugh, Edward N.; Sarunic, Marinko V.; Zawadzki, Robert J.

    2014-03-01

    We demonstrate Adaptive optics - Optical Coherence Tomography (OCT) with modal sensorless Adaptive Optics correction with the use of novel Adaptive Lens (AL) applied for in-vivo imaging of mouse retinas. The AL can generate low order aberrations: defocus, astigmatism, coma and spherical aberration that were used in an adaptive search algorithm. Accelerated processing of the OCT data with a Graphic Processing Unit (GPU) permitted real time extraction of image projection total intensity for arbitrarily selected retinal depth plane to be optimized. Wavefront sensorless control is a viable option for imaging biological structures for which AOOCT cannot establish a reliable wavefront that could be corrected by wavefront corrector. Image quality improvements offered by adaptive lens with sensorless AO-OCT was evaluated on in vitro samples followed by mouse retina data acquired in vivo.

  15. Aberration-corrected STEM/TEM imaging at 15 kV

    Sasaki, Takeo, E-mail: tasasaki@jeol.co.jp [EM Business Unit, JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo 196-8558 (Japan); Sawada, Hidetaka; Hosokawa, Fumio [EM Business Unit, JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo 196-8558 (Japan); Sato, Yuta; Suenaga, Kazu [Nanotube Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 5, Higashi 1-1-1, Tsukuba, Ibaraki 305-8565 (Japan)

    2014-10-15

    The performance of aberration-corrected (scanning) transmission electron microscopy (S/TEM) at an accelerating voltage of 15 kV was evaluated in a low-voltage microscope equipped with a cold-field emission gun and a higher-order aberration corrector. Aberrations up to the fifth order were corrected by the aberration measurement and auto-correction system using the diffractogram tableau method in TEM and Ronchigram analysis in STEM. TEM observation of nanometer-sized particles demonstrated that aberrations up to an angle of 50 mrad were compensated. A TEM image of Si[110] exhibited lattice fringes with a spacing of 0.192 nm, and the power spectrum of the image showed spots corresponding to distances of 0.111 nm. An annular dark-field STEM image of Si[110] showed lattice fringes of (111) and (22¯0) planes corresponding to lattice distances of 0.314 nm and 0.192 nm, respectively. At an accelerating voltage of 15 kV, the developed low-voltage microscope achieved atomic-resolution imaging with a small chromatic aberration and a large uniform phase. - Highlights: • Aberration-corrected STEM/TEM imaging at 15 kV demonstrated lattice fringes of Si[110] single crystal with a spacing of 0.192 nm. • To achieve this performance at a lower accelerating voltage, uniform phase area over 50 mrad is mandatory in Ronchigram and Diffractogram tableau. • This means a higher-order aberration of six-fold astigmatism should be compensated. • In addition, decreasing the effect of chromatic aberration plays an important role for improving the performance of linear scattering component at 15 kV TEM.

  16. Correction of optical aberrations in elliptic neutron guides

    Bentley, Phillip M., E-mail: phillip.bentley@esss.se [Australian Nuclear Science and Technology Organisation (ANSTO), Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia); European Spallation Source ESS AB, Box 176, 221 00 Lund (Sweden); Kennedy, Shane J. [Australian Nuclear Science and Technology Organisation (ANSTO), Locked Bag 2001, Kirrawee DC, NSW 2232 (Australia); Andersen, Ken H. [European Spallation Source ESS AB, Box 176, 221 00 Lund (Sweden); Martin Rodriguez, Damian [Juelich Centre for Neutron Science, Forschungszentrum Juelich GmbH, 52425 Juelich (Germany); Mildner, David F.R. [National Institute of Standards and Technology, Gaithersburg, MD 20899 (United States)

    2012-11-21

    Modern, nonlinear ballistic neutron guides are an attractive concept in neutron beam delivery and instrumentation because they offer increased performance over straight or linearly tapered guides. However, like other ballistic geometries they have the potential to create significantly non-trivial instrumental resolution functions. We address the source of the most prominent optical aberration, namely coma, and we show that for extended sources the off-axis rays have a different focal length from on-axis rays, leading to multiple reflections in the guide system. We illustrate how the interplay between coma, sources of finite size, and mirrors with non-perfect reflectivity can therefore conspire to produce uneven distributions in the neutron beam divergence, a source of complicated resolution functions. To solve these problems, we propose a hybrid elliptic-parabolic guide geometry. Using this new kind of neutron guide shape, it is possible to condition the neutron beam and remove almost all of the aberrations, whilst providing the same performance in beam current as a standard elliptic neutron guide. We highlight the positive implications for neutron scattering instruments that this new shape can bring.

  17. Correction of optical aberrations in elliptic neutron guides

    Modern, nonlinear ballistic neutron guides are an attractive concept in neutron beam delivery and instrumentation because they offer increased performance over straight or linearly tapered guides. However, like other ballistic geometries they have the potential to create significantly non-trivial instrumental resolution functions. We address the source of the most prominent optical aberration, namely coma, and we show that for extended sources the off-axis rays have a different focal length from on-axis rays, leading to multiple reflections in the guide system. We illustrate how the interplay between coma, sources of finite size, and mirrors with non-perfect reflectivity can therefore conspire to produce uneven distributions in the neutron beam divergence, a source of complicated resolution functions. To solve these problems, we propose a hybrid elliptic–parabolic guide geometry. Using this new kind of neutron guide shape, it is possible to condition the neutron beam and remove almost all of the aberrations, whilst providing the same performance in beam current as a standard elliptic neutron guide. We highlight the positive implications for neutron scattering instruments that this new shape can bring.

  18. Correcting for color crosstalk and chromatic aberration in multicolor particle shadow velocimetry

    Color crosstalk and chromatic aberration can bias estimates of fluid velocity measured by color particle shadow velocimetry (CPSV), using multicolor illumination and a color camera. This article describes corrections to remove these bias errors, and their evaluation. Color crosstalk removal is demonstrated with linear unmixing. It is also shown that chromatic aberrations may be removed using either scale calibration, or by processing an image illuminated by all colors simultaneously. CPSV measurements of a fully developed turbulent pipe flow of glycerin were conducted. Corrected velocity statistics from these measurements were compared to both single-color PSV and LDV measurements and showed excellent agreement to fourth-order, to well into the viscous sublayer. Recommendations for practical assessment and correction of color aberration and color crosstalk are discussed. (paper)

  19. High-resolution adaptive optics scanning laser ophthalmoscope with dual deformable mirrors for large aberration correction

    Chen, D; Jones, S M; Silva, D A; Olivier, S S

    2007-01-25

    Scanning laser ophthalmoscopes with adaptive optics (AOSLO) have been shown previously to provide a noninvasive, cellular-scale view of the living human retina. However, the clinical utility of these systems has been limited by the available deformable mirror technology. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina, making the AOSLO system a viable, non-invasive, high-resolution imaging tool for clinical diagnostics. We used a bimorph deformable mirror to correct low-order aberrations with relatively large amplitudes. The bimorph mirror is manufactured by Aoptix, Inc. with 37 elements and 18 {micro}m stroke in a 10 mm aperture. We used a MEMS deformable mirror to correct high-order aberrations with lower amplitudes. The MEMS mirror is manufactured by Boston Micromachine, Inc with 144 elements and 1.5 {micro}m stroke in a 3 mm aperture. We have achieved near diffraction-limited retina images using the dual deformable mirrors to correct large aberrations up to {+-} 3D of defocus and {+-} 3D of cylindrical aberrations with test subjects. This increases the range of spectacle corrections by the AO systems by a factor of 10, which is crucial for use in the clinical environment. This ability for large phase compensation can eliminate accurate refractive error fitting for the patients, which greatly improves the system ease of use and efficiency in the clinical environment.

  20. Holographic Adaptive Laser Optics System (HALOS): Fast, Autonomous Aberration Correction

    Andersen, G.; MacDonald, K.; Gelsinger-Austin, P.

    2013-09-01

    We present an adaptive optics system which uses a multiplexed hologram to deconvolve the phase aberrations in an input beam. This wavefront characterization is extremely fast as it is based on simple measurements of the intensity of focal spots and does not require any computations. Furthermore, the system does not require a computer in the loop and is thus much cheaper, less complex and more robust as well. A fully functional, closed-loop prototype incorporating a 32-element MEMS mirror has been constructed. The unit has a footprint no larger than a laptop but runs at a bandwidth of 100kHz over an order of magnitude faster than comparable, conventional systems occupying a significantly larger volume. Additionally, since the sensing is based on parallel, all-optical processing, the speed is independent of actuator number running at the same bandwidth for one actuator as for a million. We are developing the HALOS technology with a view towards next-generation surveillance systems for extreme adaptive optics applications. These include imaging, lidar and free-space optical communications for unmanned aerial vehicles and SSA. The small volume is ideal for UAVs, while the high speed and high resolution will be of great benefit to the ground-based observation of space-based objects.

  1. Transmissive liquid-crystal device correcting primary coma aberration and astigmatism in laser scanning microscopy

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2016-03-01

    Laser scanning microscopy allows 3D cross-sectional imaging inside biospecimens. However, certain aberrations produced can degrade the quality of the resulting images. We previously reported a transmissive liquid-crystal device that could compensate for the predominant spherical aberrations during the observations, particularly in deep regions of the samples. The device, inserted between the objective lens and the microscope revolver, improved the image quality of fixed-mouse-brain slices that were observed using two-photon excitation laser scanning microscopy, which was originally degraded by spherical aberration. In this study, we developed a transmissive device that corrects primary coma aberration and astigmatism, motivated by the fact that these asymmetric aberrations can also often considerably deteriorate image quality, even near the sample surface. The device's performance was evaluated by observing fluorescent beads using single-photon excitation laser scanning microscopy. The fluorescence intensity in the image of the bead under a cover slip tilted in the y-direction was increased by 1.5 times after correction by the device. Furthermore, the y- and z-widths of the imaged bead were reduced to 66% and 65%, respectively. On the other hand, for the imaged bead sucked into a glass capillary in the longitudinal x-direction, correction with the device increased the fluorescence intensity by 2.2 times compared to that of the aberrated image. In addition, the x-, y-, and z-widths of the bead image were reduced to 75%, 53%, and 40%, respectively. Our device successfully corrected several asymmetric aberrations to improve the fluorescent signal and spatial resolution, and might be useful for observing various biospecimens.

  2. Atmospheric correction algorithm with multidirectional POLDER data

    Mitomi, Yasushi; Fukushima, Hajime; Takamura, Tamio

    2002-01-01

    The atmospheric correction in ocean color remote sensing ins the most significant technique to retrieve the water leaving radiances, which are less than 10 percent of the satellite radiances, and its main errors are occurred by the estimation errors of the aerosol property and quantity which are highly variable in both space and time. In this study, our main purpose is to develop the advanced atmospheric correction method by using multi-viewing satellite data. POLDER onboard ADEOS can acquire multi-direction reflectance up to 14 viewing angles. In order to evaluate the validity of the multi-angle algorithm, we tired to test the algorithm with POLDER data. Results of comparisons with OCTS algorithm show that this algorithm with 3 or 4 angles POLDER data is available to estimate the aerosol properties because it is not affected form the errors depend on the band ratio.

  3. Conformal optical design with combination of static and dynamic aberration corrections

    Li Yan; Li Lin; Huang Yi-Fan; Liu Jia-Guo

    2009-01-01

    Conformal domes that are shaped to meet aerodynamic requirements can increase range and speed for the host platform. Because these domes typically deviate greatly from spherical surface descriptions, a variety of aberrations are induced which vary with the field-of-regard (FOR) angle. A system for correcting optical aberrations created by a conformal dome has an outer surface and an inner surface. Optimizing the inner surface is regard as static aberration correction. A deformable mirror is placed at the position of the secondary mirror in the two-mirror all reflective imaging system, which is the dynamic aberration correction. An ellipsoidal MgF2 conformal dome with a fineness ratio of 1.0 is designed as an example. The FOR angle is 00°-30°, and the design wavelength is 4 μm. After the optimization at 7zoom positions by using the design tools Code V, the root-mean-square (RMS) spot size is reduced to approximately 0.99 to 1.48 times the diffraction limit. The design results show that the performances of the conformal optical systems can be greatly improved by the combination of the static correction and the dynamic correction.

  4. Aberration-corrected imaging of active sites on industrial catalyst nanoparticles

    Gontard, Lionel Cervera; Chang, L-Y; Hetherington, CJD;

    2007-01-01

    Picture perfect: Information about the local topologies of active sites on commercial nanoparticles can be gained with atomic resolution through spherical-aberration-corrected transmission electron microscopy (TEM). A powder of Pt nanoparticles on carbon black was examined with two advanced TEM...

  5. Simultaneous and independent adaptive correction of spherical and chromatic aberration using an electron mirror and lens combination

    We present a theoretical analysis of an electrostatic triode mirror combined with an einzel lens for the correction of spherical and chromatic aberration. We show that this device adaptively corrects spherical and chromatic aberration simultaneously and independently. Chromatic aberration can be compensated over a relative range of −38% to +100%, and spherical aberration over ±100% range. We compare the analytic calculation with a numerical simulation and show that the two descriptions agree to within 5% in the relevant operating regime of the device. -- Highlights: ► Analytic model of three-electrode electrostatic mirror and lens. ► Wide-range, dynamic correction of spherical and chromatic aberration in electron optics. ► Optimized model for aberration correction. ► Comparison between analytic expression and numerical simulation.

  6. A method to design aspheric spectacles for correction of high-order aberrations of human eye

    LI Rui; WANG ZhaoQi; LIU YongJi; MU GuoGuang

    2012-01-01

    Aiming at the correction of high-order aberrations of human eye with spectacles,a design method of aspheric spectacles is proposed based on the eye's wavefront aberrations data.Regarding the eyeball and the spectacles as a whole system-the lens-eye system-the surface profiles of the spectacles are achieved by optimization procedure of lens design.Different from the conventional optometry,in which the refraction prescription is acquired with a visual chart,the design takes into account the two aspects of actual human viewing,eyeball rolling and certain distinct viewing field.The rotation angle of eyeball is set to be ±20° as wearing spectacles,and the field of view is set to be ∧7° which is especially important as watching screen display.The individual eye model is constructed as the main part of the lens-eye system.The Liou eye model is modified by sticking a thin meniscus lens to the crystalline lens.Then the defocus of the individual eye is transferred to the front surface of the meniscus lens,and the astigmatism and high-order aberrations are transferred to the front surface of the cornea.50 eyes are involved in this research,among which 36 eyes have good enough visual performance already after sphero-cylindrical correction.10 eyes have distinct improvement in vision and 4 eyes have no visual improvement by further aspheric correction.6 typical subject eyes are selected for the aberrations analysis and the spectacles design in this paper.It is shown that the validity of visual correction of aspheric lens depends on the characteristics of the eye's wavefront aberrations,and it is effective for the eye with larger astigmatism or spherical aberration.Compared with sphero-cylindrical correction only,the superiority taken by the aspheric correction is mainly on the improvement of MTF at a larger field of view.For the best aspheric correction,the MTF values increase by 18.87%,38.34%,44.36%,51.29% and 57.32% at the spatial frequencies of 40

  7. An Aberration Corrected Photoemission Electron Microscope at the Advanced Light Source

    Design of a new aberration corrected Photoemission electron microscope PEEM3 at the Advanced Light Source is outlined. PEEM3 will be installed on an elliptically polarized undulator beamline and will be used for the study of complex materials at high spatial and spectral resolution. The critical components of PEEM3 are the electron mirror aberration corrector and aberration-free magnetic beam separator. The models to calculate the optical properties of the electron mirror are discussed. The goal of the PEEM3 project is to achieve the highest possible transmission of the system at resolutions comparable to our present PEEM2 system (50 nm) and to enable significantly higher resolution, albeit at the sacrifice of intensity. We have left open the possibility to add an energy filter at a later date, if it becomes necessary driven by scientific need to improve the resolution further

  8. A monochromatic, aberration-corrected, dual-beam low energy electron microscope

    The monochromatic, aberration-corrected, dual-beam low energy electron microscope (MAD-LEEM) is a novel instrument aimed at imaging of nanostructures and surfaces at sub-nanometer resolution that includes a monochromator, aberration corrector and dual beam illumination. The monochromator reduces the energy spread of the illuminating electron beam, which significantly improves spectroscopic and spatial resolution. The aberration corrector utilizes an electron mirror with negative aberrations that can be used to compensate the aberrations of the LEEM objective lens for a range of electron energies. Dual flood illumination eliminates charging generated when a conventional LEEM is used to image insulating specimens. MAD-LEEM is designed for the purpose of imaging biological and insulating specimens, which are difficult to image with conventional LEEM, Low-Voltage SEM, and TEM instruments. The MAD-LEEM instrument can also be used as a general purpose LEEM with significantly improved resolution. The low impact energy of the electrons is critical for avoiding beam damage, as high energy electrons with keV kinetic energies used in SEMs and TEMs cause irreversible change to many specimens, in particular biological materials. A potential application for MAD-LEEM is in DNA sequencing, which demands imaging techniques that enable DNA sequencing at high resolution and speed, and at low cost. The key advantages of the MAD-LEEM approach for this application are the low electron impact energies, the long read lengths, and the absence of heavy-atom DNA labeling. Image contrast simulations of the detectability of individual nucleotides in a DNA strand have been developed in order to refine the optics blur and DNA base contrast requirements for this application. - Highlights: • We present a LEEM with a monochromator, aberration corrector, and two electron beams. • We analyze objective lens aberrations up to 5th order with aberration correction. • Tetrode and pentode mirror

  9. Simultaneous and independent adaptive correction of spherical and chromatic aberration using an electron mirror and lens combination.

    Fitzgerald, J P S; Word, R C; Könenkamp, R

    2012-04-01

    We present a theoretical analysis of an electrostatic triode mirror combined with an einzel lens for the correction of spherical and chromatic aberration. We show that this device adaptively corrects spherical and chromatic aberration simultaneously and independently. Chromatic aberration can be compensated over a relative range of -38% to +100%, and spherical aberration over ±100% range. We compare the analytic calculation with a numerical simulation and show that the two descriptions agree to within 5% in the relevant operating regime of the device. PMID:22459116

  10. Progress on PEEM3 - An Aberration Corrected X-Ray Photoemission Electron Microscope at the ALS

    A new ultrahigh-resolution photoemission electron microscope called PEEM3 is being developed and built at the Advanced Light Source (ALS). An electron mirror combined with a much-simplified magnetic dipole separator is to be used to provide simultaneous correction of spherical and chromatic aberrations. It is installed on an elliptically polarized undulator (EPU) beamline, and will be operated with very high spatial resolution and high flux to study the composition, structure, electric and magnetic properties of complex materials. The instrument has been designed and is described. The instrumental hardware is being deployed in 2 phases. The first phase is the deployment of a standard PEEM type microscope consisting of the standard linear array of electrostatic electron lenses. The second phase will be the installation of the aberration corrected upgrade to improve resolution and throughput. This paper describes progress as the instrument enters the commissioning part of the first phase

  11. Progress on PEEM3 -- An Aberration Corrected X-Ray Photoemission Electron Microscope at the ALS

    A new ultrahigh-resolution photoemission electron microscope called PEEM3 is being developed and built at the Advanced Light Source (ALS). An electron mirror combined with a much-simplified magnetic dipole separator is to be used to provide simultaneous correction of spherical and chromatic aberrations. It is installed on an elliptically polarized undulator (EPU) beamline, and will be operated with very high spatial resolution and high flux to study the composition, structure, electric and magnetic properties of complex materials. The instrument has been designed and is described. The instrumental hardware is being deployed in 2 phases. The first phase is the deployment of a standard PEEM type microscope consisting of the standard linear array of electrostatic electron lenses. The second phase will be the installation of the aberration corrected upgrade to improve resolution and throughput. This paper describes progress as the instrument enters the commissioning part of the first phase

  12. In-situ aberration correction of Bessel beams using spatial light modulator

    Jákl, Petr; Arzola, A. V.; Zemánek, Pavel

    Bellingham: SPIE, 2014, 94420G: 1-5. ISBN 9781628415575. ISSN 0277-786X. [Optics and Measurement Conference 2014 (OaM 2014). Liberec (CZ), 07.10.2014-10.10.2014] R&D Projects: GA MŠk LH12018; GA MŠk(CZ) LO1212; GA MŠk ED0017/01/01 Institutional support: RVO:68081731 Keywords : optical aberration correction * holography * spatial light modulator * optical trapping Subject RIV: BH - Optics, Masers, Lasers

  13. Chromatic aberration elimination for digital rear projection television L-type lens by genetic algorithms

    Fang, Yi-Chin; Liu, Tung-Kuan; Wu, Bo-Wen; Chou, Jyh-Horng; MacDonald, John

    2008-05-01

    Following the development of a digitalized image optics system, chromatic aberration has become increasingly important especially in lateral color aberration. For rear projection television L-type lens, chromatic aberration plays the significant role because it is easily seen when facing bright screen. Basically, the elimination of axial chromatic and lateral color aberration for an optical lens depends on the choice of optical glass. DLS (damped least squares), a Ray-tracing-based method, is limited, owing to its inability to identify an enhanced optical system configuration. Genetic algorithms were applied to so-called global optimization but unfortunately so far the results show little success. Additionally, L-type optics with aspherical surface might complicate optimization due to being nonlinear response during optimization. As an alternative, this research proposes a new feasible chromatic aberration optimization process by using algorithms involving theories of geometric optics in a lens, real encoding, multiple dynamic crossover and random gene mutation techniques. In this research, rear projection television lens with aspherical surface and L-type lens are mainly discussed. Results and conclusions show that attempts to eliminate difficult axial and lateral color aberration are successful.

  14. Optimizing wavefront-guided corrections for highly aberrated eyes in the presence of registration uncertainty

    Shi, Yue; Queener, Hope M.; Marsack, Jason D.; Ravikumar, Ayeswarya; Bedell, Harold E.; Applegate, Raymond A.

    2013-01-01

    Dynamic registration uncertainty of a wavefront-guided correction with respect to underlying wavefront error (WFE) inevitably decreases retinal image quality. A partial correction may improve average retinal image quality and visual acuity in the presence of registration uncertainties. The purpose of this paper is to (a) develop an algorithm to optimize wavefront-guided correction that improves visual acuity given registration uncertainty and (b) test the hypothesis that these corrections pro...

  15. A proposal for the holographic correction of incoherent aberrations by tilted reference waves

    Röder, Falk, E-mail: Falk.Roeder@Triebenberg.de; Lubk, Axel

    2015-05-15

    The recently derived general transfer theory for off-axis electron holography provides a new approach for reconstructing the electron wave beyond the conventional sideband information limit. Limited ensemble coherence of the electron beam between object and reference area leads to an attenuation of spatial frequencies of the object exit wave in the presence of aberrations of the objective lens. Concerted tilts of the reference wave under the condition of an invariant object exit wave are proposed to diminish the aberration impact on spatial frequencies even beyond the sideband information limit allowing its transfer with maximum possible contrast. In addition to the theoretical considerations outlined in detail, an experimental proof-of-principle is presented. A fully controlled tilt of the reference wave, however, remains as a promising task for the future. The use of a hologram series with varying reference wave tilt is considered for linearly synthesizing an effective aperture for the transfer into the sideband with broader bandwidth compared to conventional off-axis electron holography allowing us to correct the incoherent aberrations in transmission electron microscopy. Furthermore, tilting a reference wave with respect to a plane wave is expected to be an alternative way for measuring the coherent and incoherent aberrations of a transmission electron microscope. The capability of tilting the reference wave is expected to be beneficial for improving the signal-to-noise ratio in dark-field off-axis electron holography as well. - Highlights: • We examine the use of tilted reference waves in off-axis electron holography. • Generalized holographic transfer theory reveals a selective filtering effect. • We propose the correction of incoherent aberrations by series acquisitions. • For a proof-of-principle, we employ a crystal for tilting the reference wave.

  16. A proposal for the holographic correction of incoherent aberrations by tilted reference waves

    The recently derived general transfer theory for off-axis electron holography provides a new approach for reconstructing the electron wave beyond the conventional sideband information limit. Limited ensemble coherence of the electron beam between object and reference area leads to an attenuation of spatial frequencies of the object exit wave in the presence of aberrations of the objective lens. Concerted tilts of the reference wave under the condition of an invariant object exit wave are proposed to diminish the aberration impact on spatial frequencies even beyond the sideband information limit allowing its transfer with maximum possible contrast. In addition to the theoretical considerations outlined in detail, an experimental proof-of-principle is presented. A fully controlled tilt of the reference wave, however, remains as a promising task for the future. The use of a hologram series with varying reference wave tilt is considered for linearly synthesizing an effective aperture for the transfer into the sideband with broader bandwidth compared to conventional off-axis electron holography allowing us to correct the incoherent aberrations in transmission electron microscopy. Furthermore, tilting a reference wave with respect to a plane wave is expected to be an alternative way for measuring the coherent and incoherent aberrations of a transmission electron microscope. The capability of tilting the reference wave is expected to be beneficial for improving the signal-to-noise ratio in dark-field off-axis electron holography as well. - Highlights: • We examine the use of tilted reference waves in off-axis electron holography. • Generalized holographic transfer theory reveals a selective filtering effect. • We propose the correction of incoherent aberrations by series acquisitions. • For a proof-of-principle, we employ a crystal for tilting the reference wave

  17. A proposal for the holographic correction of incoherent aberrations by tilted reference waves.

    Röder, Falk; Lubk, Axel

    2015-05-01

    The recently derived general transfer theory for off-axis electron holography provides a new approach for reconstructing the electron wave beyond the conventional sideband information limit. Limited ensemble coherence of the electron beam between object and reference area leads to an attenuation of spatial frequencies of the object exit wave in the presence of aberrations of the objective lens. Concerted tilts of the reference wave under the condition of an invariant object exit wave are proposed to diminish the aberration impact on spatial frequencies even beyond the sideband information limit allowing its transfer with maximum possible contrast. In addition to the theoretical considerations outlined in detail, an experimental proof-of-principle is presented. A fully controlled tilt of the reference wave, however, remains as a promising task for the future. The use of a hologram series with varying reference wave tilt is considered for linearly synthesizing an effective aperture for the transfer into the sideband with broader bandwidth compared to conventional off-axis electron holography allowing us to correct the incoherent aberrations in transmission electron microscopy. Furthermore, tilting a reference wave with respect to a plane wave is expected to be an alternative way for measuring the coherent and incoherent aberrations of a transmission electron microscope. The capability of tilting the reference wave is expected to be beneficial for improving the signal-to-noise ratio in dark-field off-axis electron holography as well. PMID:25680104

  18. Quantum computations: algorithms and error correction

    Kitaev, A. Yu

    1997-12-01

    Contents §0. Introduction §1. Abelian problem on the stabilizer §2. Classical models of computations2.1. Boolean schemes and sequences of operations2.2. Reversible computations §3. Quantum formalism3.1. Basic notions and notation3.2. Transformations of mixed states3.3. Accuracy §4. Quantum models of computations4.1. Definitions and basic properties4.2. Construction of various operators from the elements of a basis4.3. Generalized quantum control and universal schemes §5. Measurement operators §6. Polynomial quantum algorithm for the stabilizer problem §7. Computations with perturbations: the choice of a model §8. Quantum codes (definitions and general properties)8.1. Basic notions and ideas8.2. One-to-one codes8.3. Many-to-one codes §9. Symplectic (additive) codes9.1. Algebraic preparation9.2. The basic construction9.3. Error correction procedure9.4. Torus codes §10. Error correction in the computation process: general principles10.1. Definitions and results10.2. Proofs §11. Error correction: concrete procedures11.1. The symplecto-classical case11.2. The case of a complete basis Bibliography

  19. Correction of axial chromatic aberrations in confocal Raman microspectroscopic measurements of a single microbial spore.

    Lasch, Peter; Hermelink, Antje; Naumann, Dieter

    2009-06-01

    Herein we describe a strategy for correcting the longitudinal or axial component of chromatic aberration in confocal Raman microspectroscopy. The method is based on measuring a vertical series of confocal Raman sections of samples by a high numerical aperture Raman microscope. Using the known characteristics of the wavelength-dependent focal shift of the optical system, the Raman intensities can be corrected to allow the rearrangement of Raman data from different focal planes. In the present study the computational correction routine was applied to an experimental data set of 4-dimensional (xyz spatial and the spectral dimension) confocal Raman spectra collected from single spores of Bacillus cereus. After correcting the axial component of the chromatic aberration, univariate and multivariate spectral parameters were obtained and used in the following for 3D segmentation and volume rendering on the basis of the structural and compositional information contained in the Raman spectra of the spore. Using univariate Raman intensities from defined functional group frequencies or k-means cluster membership values as a multivariate parameter for volume rendering, we demonstrate a high degree of correlation between confocal Raman microspectroscopy and the spores' morphology. In this paper we will also present cluster mean spectra which will be discussed in light of the presence of proteins and Ca-DPA, a calcium chelate of dipicolinic acid in the spore. PMID:19475143

  20. Numerical correction of anti-symmetric aberrations in single HRTEM images of weakly scattering 2D-objects

    Lehtinen, Ossi, E-mail: ossi.lehtinen@gmail.com [Central Facility for Electron Microscopy, Group of Electron Microscopy of Materials Science, University of Ulm, 89081 Ulm (Germany); Geiger, Dorin; Lee, Zhongbo [Central Facility for Electron Microscopy, Group of Electron Microscopy of Materials Science, University of Ulm, 89081 Ulm (Germany); Whitwick, Michael Brian; Chen, Ming-Wei; Kis, Andras [Electrical Engineering Institute, Ecole Polytechnique Federale de Lausanne (EPFL), CH-1015 Lausanne (Switzerland); Kaiser, Ute [Central Facility for Electron Microscopy, Group of Electron Microscopy of Materials Science, University of Ulm, 89081 Ulm (Germany)

    2015-04-15

    Here, we present a numerical post-processing method for removing the effect of anti-symmetric residual aberrations in high-resolution transmission electron microscopy (HRTEM) images of weakly scattering 2D-objects. The method is based on applying the same aberrations with the opposite phase to the Fourier transform of the recorded image intensity and subsequently inverting the Fourier transform. We present the theoretical justification of the method, and its verification based on simulated images in the case of low-order anti-symmetric aberrations. Ultimately the method is applied to experimental hardware aberration-corrected HRTEM images of single-layer graphene and MoSe{sub 2} resulting in images with strongly reduced residual low-order aberrations, and consequently improved interpretability. Alternatively, this method can be used to estimate by trial and error the residual anti-symmetric aberrations in HRTEM images of weakly scattering objects.

  1. Simultaneous fluorescence and high-resolution bright-field imaging with aberration correction over a wide field-of-view with Fourier ptychographic microscopy (FPM) (Conference Presentation)

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-03-01

    We present a method to acquire both fluorescence and high-resolution bright-field images with correction for the spatially varying aberrations over a microscope's wide field-of-view (FOV). First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff frequency of the microscope objective lens. At the same time, FPM algorithm is able to leverage on the redundancy within the set of acquired FPM bright-field images to estimate the microscope aberrations, which usually deteriorate in regions further away from the FOV's center. Second, the procedure acquires a raw wide-FOV fluorescence image within the same setup. Lack of moving parts allows us to use the FPM-estimated aberration map to computationally correct for the aberrations in the fluorescence image through deconvolution. Overlaying the aberration-corrected fluorescence image on top of the high-resolution bright-field image can be done with accurate spatial correspondence. This can provide means to identifying fluorescent regions of interest within the context of the sample's bright-field information. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of ~18.

  2. Fast Correction Optics to Reduce Chromatic Aberrations in Longitudinally Compressed Ion Beams

    Longitudinally compressed ion beam pulses are currently employed in ion-beam based warm dense matter studies. Compression arises from an imposed time-dependent longitudinal velocity ramp followed by drift in a neutralized channel. Chromatic aberrations in the final focusing system arising from this chirp increase the attainable beam spot and reduce the effective fluence on target. We report recent work on fast correction optics that remove the time-dependent beam envelope divergence and minimizes the beam spot on target. We present models of the optical element design and predicted ion beam fluence.

  3. Derivative Form of Off-axis Aberration Correction Surface and Its Application in Solar Energy Concentration

    LI Li; CHEN Ying-Tian; HU Sen

    2009-01-01

    By using the derivative method, we obtained the same result with that of the previous work of Chen et al.in 2006.Different from the integral form, the derivative form of the surface expression published in this paper is derived from differential equation and based on the theory of non-imaging focusing heliostat proposed by Chen et al.in 2001.The comparison of the derivative form of fixed aberration correction surface has been made with that of integral form surface as well as that of spherical surface in concentrating the solar ray.

  4. Optimum aberration coefficients for recording high-resolution off-axis holograms in a Cs-corrected TEM

    Linck, Martin, E-mail: linck@ceos-gmbh.de [CEOS GmbH, Englerstr. 28, D-69126 Heidelberg (Germany)

    2013-01-15

    Amongst the impressive improvements in high-resolution electron microscopy, the Cs-corrector also has significantly enhanced the capabilities of off-axis electron holography. Recently, it has been shown that the signal above noise in the reconstructable phase can be significantly improved by combining holography and hardware aberration correction. Additionally, with a spherical aberration close to zero, the traditional optimum focus for recording high-resolution holograms ('Lichte's defocus') has become less stringent and both, defocus and spherical aberration, can be selected freely within a certain range. This new degree of freedom can be used to improve the signal resolution in the holographically reconstructed object wave locally, e.g. at the atomic positions. A brute force simulation study for an aberration corrected 200 kV TEM is performed to determine optimum values for defocus and spherical aberration for best possible signal to noise in the reconstructed atomic phase signals. Compared to the optimum aberrations for conventional phase contrast imaging (NCSI), which produce 'bright atoms' in the image intensity, the resulting optimum values of defocus and spherical aberration for off-axis holography enable 'black atom contrast' in the hologram. However, they can significantly enhance the local signal resolution at the atomic positions. At the same time, the benefits of hardware aberration correction for high-resolution off-axis holography are preserved. It turns out that the optimum is depending on the object and its thickness and therefore not universal. -- Highlights: Black-Right-Pointing-Pointer Optimized aberration parameters for high-resolution off-axis holography. Black-Right-Pointing-Pointer Simulation and analysis of noise in high-resolution off-axis holograms. Black-Right-Pointing-Pointer Improving signal resolution in the holographically reconstructed phase shift. Black-Right-Pointing-Pointer Comparison of &apos

  5. Phase aberration correction by multi-stencils fast marching method using sound speed image in ultrasound computed tomography

    Qu, Xiaolei; Azuma, Takashi; Lin, Hongxiang; Imoto, Haruka; Tamano, Satoshi; Takagi, Shu; Umemura, Shin-Ichiro; Sakuma, Ichiro; Matsumoto, Yoichiro

    2016-04-01

    Reflection image from ultrasound computed tomography (USCT) system can be obtained by synthetic aperture technique, however its quality is decreased by phase aberration caused by inhomogeneous media. Therefore, phase aberration correction is important to improve image quality. In this study, multi-stencils fast marching method (MSFMM) is employed for phase correction. The MSFMM is an accurate and fast solution of Eikonal equation which considers the refraction. The proposed method includes two steps. First, the MSFMM is used to compute sound propagation time from each element to each image gird point using sound speed image of USCT. Second, synthetic aperture technique is employed to obtain reflection image using the computed propagation time. To evaluate the proposed method, both numerical simulation and phantom experiment were conducted. With regard to numerical simulation, both quantitative and qualitative comparisons between reflection images with and without phase aberration correction were given. In the quantitative comparison, the diameters of point spread function (PSF) in reflection images of a two layer structure were presented. In the qualitative comparison, reflection images of simple circle and complex breast modes with phase aberration correction show higher quality than that without the correction. In respect to phantom experiment, a piece of breast phantom with artificial glandular structure inside was scanned by a USCT prototype, and the artificial glandular structure is able to be visible more clearly in the reflection image with phase aberration correction than in that without the correction. In this study, a phase aberration correction method by the MSFMM are proposed for reflection image of the USCT.

  6. Dark-field electron holography for the mapping of strain in nanostructures: correcting artefacts and aberrations

    We present details of the new electron holographic dark-field technique (HoloDark) for mapping strain in nanostructures. A diffracted beam emanating from an unstrained region of crystal is interfered (with the aid of an electrostatic biprism) with a diffracted beam from the strained region of interest. Geometric phase analysis (GPA) of the holographic fringes determines the relative deformation of the two crystalline lattices. Strain can be measured to high precision, with nanometre spatial resolution and for micron fields of view. Experiments are carried out on the SACTEM-Toulouse, a Tecnai F20 (FEI) equipped with imaging aberration corrector (CEOS), field-emission gun and rotatable biprism (FEI). We operate the microscope in free-lens control with the main objective lens switched off and using the corrector transfer lenses as a Lorentz lens. We will present measurements of strain in test nanostructures and show how artefacts from thickness variations can be removed. Finally, we show our first results using a recently developed aberration-corrected Lorentz mode (CEOS).

  7. Prospects for versatile phase manipulation in the TEM: Beyond aberration correction

    In this paper we explore the desirability of a transmission electron microscope in which the phase of the electron wave can be freely controlled. We discuss different existing methods to manipulate the phase of the electron wave and their limitations. We show how with the help of current techniques the electron wave can already be crafted into specific classes of waves each having their own peculiar properties. Assuming a versatile phase modulation device is feasible, we explore possible benefits and methods that could come into existence borrowing from light optics where the so-called spatial light modulators provide programmable phase plates for quite some time now. We demonstrate that a fully controllable phase plate building on Harald Rose's legacy in aberration correction and electron optics in general would open an exciting field of research and applications. - Highlights: • We offer a review of available phase manipulation techniques. • We demonstrate a method for producing Airy waves through aberration manipulation. • We outline hypothetical applications of arbitrary phase manipulation methods

  8. Interfacial atomic structure analysis at sub-angstrom resolution using aberration-corrected STEM

    2014-01-01

    The atomic structure of a SiGe/Si epitaxial interface grown via molecular beam epitaxy on a single crystal silicon substrate was investigated using an aberration-corrected scanning transmittance electron microscope equipped with a high-angle annular dark-field detector and an energy-dispersive spectrometer. The accuracy required for compensation of the various residual aberration coefficients to achieve sub-angstrom resolution with the electron optics system was also evaluated. It was found that the interfacial layer was composed of a silicon single crystal, connected coherently to epitaxial SiGe nanolaminates. In addition, the distance between the dumbbell structures of the Si and Ge atoms was approximately 0.136 nm at the SiGe/Si interface in the [110] orientation. The corresponding fast Fourier transform exhibited a sub-angstrom scale point resolution of 0.78 Å. Furthermore, the relative positions of the atoms in the chemical composition line scan signals could be directly interpreted from the corresponding incoherent high-angle annular dark-field image. PMID:25426003

  9. Prospects for versatile phase manipulation in the TEM: Beyond aberration correction

    Guzzinati, Giulio; Clark, Laura; Béché, Armand; Juchtmans, Roeland; Van Boxem, Ruben [EMAT, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Mazilu, Michael [SUPA, School of Physics and Astronomy, University of St Andrews, St Andrews KY16 9SS (United Kingdom); Verbeeck, Jo, E-mail: jo.verbeeck@uantwerpen.be [EMAT, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2015-04-15

    In this paper we explore the desirability of a transmission electron microscope in which the phase of the electron wave can be freely controlled. We discuss different existing methods to manipulate the phase of the electron wave and their limitations. We show how with the help of current techniques the electron wave can already be crafted into specific classes of waves each having their own peculiar properties. Assuming a versatile phase modulation device is feasible, we explore possible benefits and methods that could come into existence borrowing from light optics where the so-called spatial light modulators provide programmable phase plates for quite some time now. We demonstrate that a fully controllable phase plate building on Harald Rose's legacy in aberration correction and electron optics in general would open an exciting field of research and applications. - Highlights: • We offer a review of available phase manipulation techniques. • We demonstrate a method for producing Airy waves through aberration manipulation. • We outline hypothetical applications of arbitrary phase manipulation methods.

  10. Dark-field electron holography for the mapping of strain in nanostructures: correcting artefacts and aberrations

    Hytch, M J; Houdellier, F; Snoeck, E; Huee, F, E-mail: hytch@cemes.f [CEMES-CNRS, 29 rue Jeanne Marvig, 31055 Toulouse (France)

    2010-07-01

    We present details of the new electron holographic dark-field technique (HoloDark) for mapping strain in nanostructures. A diffracted beam emanating from an unstrained region of crystal is interfered (with the aid of an electrostatic biprism) with a diffracted beam from the strained region of interest. Geometric phase analysis (GPA) of the holographic fringes determines the relative deformation of the two crystalline lattices. Strain can be measured to high precision, with nanometre spatial resolution and for micron fields of view. Experiments are carried out on the SACTEM-Toulouse, a Tecnai F20 (FEI) equipped with imaging aberration corrector (CEOS), field-emission gun and rotatable biprism (FEI). We operate the microscope in free-lens control with the main objective lens switched off and using the corrector transfer lenses as a Lorentz lens. We will present measurements of strain in test nanostructures and show how artefacts from thickness variations can be removed. Finally, we show our first results using a recently developed aberration-corrected Lorentz mode (CEOS).

  11. Aberration corrected imaging of a carbon nanotube encapsulated Lindqvist Ion and correlation with Density Functional Theory

    Sloan, J.; Bichoutskaia, E.; Liu, Z.; Kuganathan, N.; Faulques, E.; Suenaga, K.; Shannon, I. J.

    2012-07-01

    80 kV aberration-corrected transmission electron microscopy (AC-TEM) of discrete [W6O19]2- polyoxometalate ions mounted within double walled carbon nanotubes (DWNTs) allow high precision structural studies to be performed. W atom column separations within the octahedral W6 tungsten template can be visualized with sufficient clarity that correlation with full-scale density functional theory (DFT) can be achieved. Calculations performed on the gas phase and DWNT-mounted [W6O19]2- anions show good agreement, in the latter case, with measured separations between pairs of W2 atom columns imaged within equatorial WO6 octahedra and single W atoms within axial WO6 octahedra. Structural data from the tilted chiral encapsulating DWNT was also determined simultaneously with the anion structural measurements, allowing the nanotube conformation to be addressed in the DFT calculations.

  12. Bright-field imaging of compound semiconductors using aberration-corrected scanning transmission electron microscopy

    Aoki, Toshihiro; Lu, Jing; McCartney, Martha R.; Smith, David J.

    2016-09-01

    This study reports the observation of six different zincblende compound semiconductors in [110] projection using large-collection-angle bright-field (LABF) imaging with an aberration-corrected scanning transmission electron microscope. Phase contrast is completely suppressed when the collection semi-angle is set equal to the convergence semi-angle and there are no reversals in image contrast with changes in defocus or thickness. The optimum focus for imaging closely separated pairs of atomic columns (‘dumbbells’) is unique and easily recognized, and the positions of atomic columns occupied by heavier atoms always have darker intensity than those occupied by lighter atoms. Thus, the crystal polarity of compound semiconductors can be determined unambiguously. Moreover, it is concluded that the LABF imaging mode will be highly beneficial for studying other more complicated heterostructures at the atomic scale.

  13. Image formation mechanisms of spherical aberration corrected BF STEM imaging methods

    In this study, we explore the formation mechanisms of different spherical-aberration (Cs)-corrected bright-field (BF) scanning transmission electron microscope (STEM) imaging methods. The Cs-corrected BF STEM imaging modes are characterised in detail using simulated images and experimental BF STEM images obtained with several types of detectors. The Co3O4 specimen results show that the occupancy, the atomic spacing, and the atomic number of the atoms constituting the atomic columns control image formation in BF STEM imaging, which is used to detect light atomic columns. The middle-angle BF STEM image is crucial in image formation by BF STEM imaging. - Highlights: • We explore the formation mechanisms of diversified Cs-corrected STEM imaging methods. • SrTiO3 and Co3O4 were observed by several BF STEM imaging methods. • MABF STEM plays a key role in image formation for visualising a light atomic column. • Occupancy, spacing and the atomic number in atomic columns control the image formation

  14. Optimization and stability of the contrast transfer function in aberration-corrected electron microscopy

    Tromp, R.M., E-mail: rtromp@us.ibm.com [IBM T.J. Watson Research Center, 1101 Kitchawan Road, Yorktown Heights, NY 10598 (United States); Leiden Institute of Physics, Kamerlingh Onnes Laboratory, Niels Bohrweg 2, 2333 CA Leiden (Netherlands); Schramm, S.M. [Leiden Institute of Physics, Kamerlingh Onnes Laboratory, Niels Bohrweg 2, 2333 CA Leiden (Netherlands)

    2013-02-15

    The Contrast Transfer Function (CTF) describes the manner in which the electron microscope modifies the object exit wave function as a result of objective lens aberrations. For optimum resolution in C{sub 3}-corrected microscopes it is well established that a small negative value of C{sub 3}, offset by positive values of C{sub 5} and defocus C{sub 1} results in the most optimal instrument resolution, and optimization of the CTF has been the subject of several studies. Here we describe a simple design procedure for the CTF that results in a most even transfer of information below the resolution limit. We address not only the resolution of the instrument, but also the stability of the CTF in the presence of small disturbances in C{sub 1} and C{sub 3}. We show that resolution can be traded for stability in a rational and transparent fashion. These topics are discussed quantitatively for both weak-phase and strong-phase (or amplitude) objects. The results apply equally to instruments at high electron energy (TEM) and at very low electron energy (LEEM), as the basic optical properties of the imaging lenses are essentially identical. - Highlights: ► An optimized Contrast Transfer Function for aberration corrected electron microscopes is proposed. ► Based on the properties of the CTF near optimum settings, we address its stability. ► Over some range of parameters resolution can be traded for stability. ► These issues are addressed for weak-phase objects, as well as strong-phase and amplitude object. ► We compare our results with CTF settings previously proposed.

  15. Optimization and stability of the contrast transfer function in aberration-corrected electron microscopy

    The Contrast Transfer Function (CTF) describes the manner in which the electron microscope modifies the object exit wave function as a result of objective lens aberrations. For optimum resolution in C3-corrected microscopes it is well established that a small negative value of C3, offset by positive values of C5 and defocus C1 results in the most optimal instrument resolution, and optimization of the CTF has been the subject of several studies. Here we describe a simple design procedure for the CTF that results in a most even transfer of information below the resolution limit. We address not only the resolution of the instrument, but also the stability of the CTF in the presence of small disturbances in C1 and C3. We show that resolution can be traded for stability in a rational and transparent fashion. These topics are discussed quantitatively for both weak-phase and strong-phase (or amplitude) objects. The results apply equally to instruments at high electron energy (TEM) and at very low electron energy (LEEM), as the basic optical properties of the imaging lenses are essentially identical. - Highlights: ► An optimized Contrast Transfer Function for aberration corrected electron microscopes is proposed. ► Based on the properties of the CTF near optimum settings, we address its stability. ► Over some range of parameters resolution can be traded for stability. ► These issues are addressed for weak-phase objects, as well as strong-phase and amplitude object. ► We compare our results with CTF settings previously proposed

  16. TOPICAL REVIEW: Present status and future prospects of spherical aberration corrected TEM/STEM for study of nanomaterials

    Nobuo Tanaka

    2008-01-01

    Full Text Available The present status of Cs-corrected TEM/STEM is described from the viewpoint of the observation of nanomaterials. Characteristic features in TEM and STEM are explained using the experimental data obtained by our group and other research groups. Cs correction up to the 3rd-order aberration of an objective lens has already been established and research interest is focused on correcting the 5th-order spherical aberration and the chromatic aberration in combination with the development of a monochromator below an electron gun for smaller point-to-point resolution in optics. Another fundamental area of interest is the limitation of TEM and STEM resolution from the viewpoint of the scattering of electrons in crystals. The minimum size of the exit-wave function below samples undergoing TEM imaging is determined from the calculation of scattering around related atomic columns in the crystals. STEM does not have this limitation because the resolution is, in principle, determined by the probe size. One of the future prospects of Cs-corrected TEM/STEM is the possibility of extending the space around the sample holder by correcting the chromatic and spherical aberrations. This wider space will contribute to the ease of performing in situ experiments and various combinations of TEM and other analysis methods. High-resolution, in situ dynamic and 3D observations/analysis are the most important keywords in the next decade of high-resolution electron microscopy.

  17. Wavefront aberration and correction characteristics in high power solid-state verification facility

    In order to optimize the design scheme of the wavefront control system in a high power solid-state laser facility, wavefront test and correction experiment are conducted on a verification facility. The results show that, although the equivalent number of Nd: glasses increases, the output static and dynamic wavefronts without defocus component is not largely raised for the application of U-turn beam reverser in the main amplifier. However, the defocus component visibly increases. And the laser is blocked at the pinhole of the spatial filter. The output near field of the main amplifier has sharp modulation and energy loss. In the experiment, the defocus component before each pinhole is adjusted in advance by moving the focal lens in the optical path. And the static wavefront without defocus component is corrected by the deformable mirror to reduce aberration at the pinhole of the last stage filter. Combining the two methods, sharp modulation and energy loss problem in near field is solved at single shot. Output wavefront of main amplifier in ICF driver will be larger with beam aperture and equivalent number of Nd: glasses increasing in the future. The scheme of the large deformable mirror at the location of cavity mirror will be an effective way to ensure beams passing through each pinhole. (authors)

  18. In-flight aberrations corrections for large space telescopes using active optics

    Laslandes, M.; Ferrari, M.; Hugot, E.; Lemaitre, G.

    2010-07-01

    The need for both high quality images and light structures is a constant concern in the conception of space telescopes. The goal here is to determine how an active optics system could be embarked on a satellite in order to correct the wave front deformations of the optical train. The optical aberrations appearing in a space environment are due to mirrors' deformations, with three main origins: the thermal variations, the weightlessness in space with respect to the Assemblage, Integration and Testing (AIT) conditions on ground and the use of large weightlighted primary mirrors. We are developing a model of deformable mirror as minimalist as possible, especially in term of number of actuators, which is able to correct the first Zernike polynomials in the specified range of amplitude and precision. Flight constraints as weight, volume and power consumption have to be considered. Firstly, such a system is designed according to the equations from the elasticity theory: we determine the geometrical and mechanical characteristics of the mirror, the location of the forces to be applied and the way to apply them. The concept is validated with a Finite Element Analysis (FEA), allowing optimizing the system by taking into account parameters absent from the theory. At the end of the program the mirror will be realized and characterized in a representative optical configuration.

  19. The first observation of titanate nanotubes by spherical aberration corrected high-resolution transmission electron microscopy

    Miao, L.; Tanemura, S.; Jiang, T.; Tanemura, M.; Yoshida, K.; Tanaka, N.; Xu, G.

    2009-07-01

    Multi-wall titanate nanotubes (MW-TNNTs) with high aspect ratio, large surface area and good uniformity were produced by alkaline hydrothermal treatment of grounded TiO 2 aerogels and further by applying freeze-drying. Not only the crystal phase and diameter, but also morphology of the starting materials impact on the aspect ratio and transformation efficiency of the obtained nanotubes. Other parameters, such as pH value during neutralization process and drying method for the final products, are important to control length and dispersion of MW-TNNTs. By spherical aberration corrected high-resolution transmission-electron-microscopy (Cs-corrected HRTEM) with lateral space resolution of 0.14 nm at 200 kV accelerating voltage and electron energy loss spectrum (EELS), the detailed structural analysis of MW-TNNTs reveals that (1) diameters of inner and outer tubes are about 4-7 nm and 10 nm, respectively, (2) numbers of layers are different from part to part along the longitudinal tube axis, (3) the walls of the tubes have interlayer spacing of 0.70-0.80 nm and the lateral fringes which are vertical to the walls have spacing of 0.32 nm, (4) each layer of MW-TNNT is the nanosheet composed by the arrayed TiO 6 octahedrons, and respective octahedron being slightly strained, and (5) no chirality of MW-TNNT tubular structure is observed.

  20. Nanostructural and Chemical Characterization of Supported Metal Oxide Catalysts by Aberration Corrected Analytical Electron Microscopy

    Zhou, Wu

    In this thesis, aberration corrected STEM imaging and chemical analysis techniques have been extensively applied in the structural and chemical characterization of supported tungsten oxide catalysts in an attempt to reveal the structure-activity relationships at play in these catalyst systems. The supported WO3/ZrO2 solid acid catalyst system is a major focal point of this thesis, and detailed aberration-corrected STEM-HAADF imaging studies were performed on a systematic set of catalysts showing different level of catalytic performance. The nature of the catalytically most active WOx species was identified by correlating structural information, obtained from STEM-HAADF and in-situ optical spectroscopy studies, with catalytic testing results. Specifically, ˜1nm distorted Zr-WOx mixed oxide clusters were identified to be the most active species for both the methanol dehydration and n-pentane isomerization reactions in the WO3/ZrO2 catalyst system. The use of amorphous zirconia as a precursor support material makes it much easier to extract and incorporate Zr cations into the surface WOx clusters during calcination. The calcination temperature was also identified to also play an important role in the formation of these most active Zr-WOx clusters. When the calcination temperature is comparable to or higher than the 896K Huttig temperature of ZrO2 (at which surface ZrO x species have sufficient mobility to agglomerate and sinter), the chance for successful surface WOx and ZrOx intermixing is significantly increased. Based on this perceived structure-activity relationship, several new catalyst synthesis strategies were developed in an attempt to optimize the catalytic performance of WOx-based catalysts. We have demonstrated in Chapter 3 that co-impregnation of WOx and ZrOx precursors onto an inactive model WO3/ZrO2 catalyst, followed by a calcination treatment above the 896K Huttig temperature of ZrO 2, promotes the surface diffusion of ZrO2 and intermixing of Zr

  1. Aberration-corrected electron microscopy of MnAs and As nanocrystals and voids in annealed (Ga,Mn)As

    Kovács, András; Kasama, Takeshi; Sadowski, J.;

    2011-01-01

    Aberration-corrected transmission electron microscopy is used to study voids and nano-crystalline MnAs and As phases formed during the annealing of Mn-doped GaAs. The effects of defocus and inner annular dark-field detector semi-angle on contrast of the nanocrystals are discussed....

  2. Correction of cell-induced optical aberrations in a fluorescence fluctuation microscope.

    Leroux, Charles-Edouard; Grichine, Alexei; Wang, Irène; Delon, Antoine

    2013-01-01

    International audience We describe the effect of optical aberrations on fluorescence fluctuations microscopy (FFM), when focusing through a single living cell. FFM measurements are performed in an aqueous fluorescent solution and prove to be a highly sensitive tool to assess the optical aberrations introduced by the cell. We demonstrate an adaptive optics (AO) system to remove the aberration-related bias in the FFM measurements. Our data show that AO is not only useful when imaging deep in...

  3. An algorithm for classifying tumors based on genomic aberrations and selecting representative tumor models

    Coon John

    2010-06-01

    Full Text Available Abstract Background Cancer is a heterogeneous disease caused by genomic aberrations and characterized by significant variability in clinical outcomes and response to therapies. Several subtypes of common cancers have been identified based on alterations of individual cancer genes, such as HER2, EGFR, and others. However, cancer is a complex disease driven by the interaction of multiple genes, so the copy number status of individual genes is not sufficient to define cancer subtypes and predict responses to treatments. A classification based on genome-wide copy number patterns would be better suited for this purpose. Method To develop a more comprehensive cancer taxonomy based on genome-wide patterns of copy number abnormalities, we designed an unsupervised classification algorithm that identifies genomic subgroups of tumors. This algorithm is based on a modified genomic Non-negative Matrix Factorization (gNMF algorithm and includes several additional components, namely a pilot hierarchical clustering procedure to determine the number of clusters, a multiple random initiation scheme, a new stop criterion for the core gNMF, as well as a 10-fold cross-validation stability test for quality assessment. Result We applied our algorithm to identify genomic subgroups of three major cancer types: non-small cell lung carcinoma (NSCLC, colorectal cancer (CRC, and malignant melanoma. High-density SNP array datasets for patient tumors and established cell lines were used to define genomic subclasses of the diseases and identify cell lines representative of each genomic subtype. The algorithm was compared with several traditional clustering methods and showed improved performance. To validate our genomic taxonomy of NSCLC, we correlated the genomic classification with disease outcomes. Overall survival time and time to recurrence were shown to differ significantly between the genomic subtypes. Conclusions We developed an algorithm for cancer classification

  4. Double aberration-corrected TEM/STEM of tungstated zirconia nanocatalysts for the synthesis of paracetamol

    Yoshida, K.; Shiju, N. R.; Brown, D. R.; Boyes, E. D.; Gai, P. L.

    2010-07-01

    We report highly active tungstated zirconia nanocatalysts for the synthesis of paracetamol by Beckmann rearrangement of 4-hydroxyacetophenone oxime. Double aberration-corrected (2AC)-TEM/STEM studies were performed in a JEOL 2200FS FEG TEM/STEM at the 1 Angstrom (1 Å = 0.1 nanometer) level. Observations at close to zero defocus were carried out using the AC-TEM as well as AC-STEM including high angle annular dark field (HAADF) imaging, from the same areas of the catalyst crystallites. The studies from the same areas have revealed the location and the nanostructure of the polytungstate species (clusters) and the nanograins of zirconia. The AC (S)TEM was crucial to observe the nanostructure and location of polytungstate clusters on the zirconia grains. Polytungstate clusters as small as 0.5 nm have been identified using the HAADF-STEM. The nanostructures of the catalyst and the W surface density have been correlated with paracetamol reaction studies. The results demonstrate the nature of active sites and high activity of the tungstated zirconia nanocatalyst, which is an environmentally clean alternative to the current homogeneous process.

  5. Double aberration-corrected TEM/STEM of tungstated zirconia nanocatalysts for the synthesis of paracetamol

    We report highly active tungstated zirconia nanocatalysts for the synthesis of paracetamol by Beckmann rearrangement of 4-hydroxyacetophenone oxime. Double aberration-corrected (2AC)-TEM/STEM studies were performed in a JEOL 2200FS FEG TEM/STEM at the 1 Angstrom (1 A = 0.1 nanometer) level. Observations at close to zero defocus were carried out using the AC-TEM as well as AC-STEM including high angle annular dark field (HAADF) imaging, from the same areas of the catalyst crystallites. The studies from the same areas have revealed the location and the nanostructure of the polytungstate species (clusters) and the nanograins of zirconia. The AC (S)TEM was crucial to observe the nanostructure and location of polytungstate clusters on the zirconia grains. Polytungstate clusters as small as 0.5 nm have been identified using the HAADF-STEM. The nanostructures of the catalyst and the W surface density have been correlated with paracetamol reaction studies. The results demonstrate the nature of active sites and high activity of the tungstated zirconia nanocatalyst, which is an environmentally clean alternative to the current homogeneous process.

  6. A Bloch wave analysis of optical sectioning in aberration-corrected STEM

    The reduction in the focal depth of field that occurs through the use of larger apertures in aberration-corrected STEM allows three-dimensional information to be retrieved by optical depth sectioning. This paper explores depth sectioning in zone-axis crystals using Bloch wave calculations. By decomposing the calculation into the contribution from individual states and from individual partial plane waves in the convergent cone of illumination, we explain the form of the electron intensity in the crystal as a function of depth. Two separate effects are found that can cause the intensity maximum to deviate from that of the expected defocus value. Firstly it is found that the unbound, high angle excited states give rise to a behaviour similar to that of the probe focusing in the vacuum, but with a prefocusing effect due to the lensing effect of the potential of the atomic column. Superimposed upon this prefocused peak is an oscillation due to interference between the channelling 1s state and the rest of the wavefunction. This oscillation can actually prevent an intensity maximum being formed at certain depths in the crystal, and will complicate the interpretation of optical sectioning data

  7. Double aberration-corrected TEM/STEM of tungstated zirconia nanocatalysts for the synthesis of paracetamol

    Yoshida, K; Boyes, E D; Gai, P L [York JEOL Nanocentre (United Kingdom); Shiju, N R; Brown, D R, E-mail: pgb500@york.ac.u [Department of Chemical and Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH (United Kingdom)

    2010-07-01

    We report highly active tungstated zirconia nanocatalysts for the synthesis of paracetamol by Beckmann rearrangement of 4-hydroxyacetophenone oxime. Double aberration-corrected (2AC)-TEM/STEM studies were performed in a JEOL 2200FS FEG TEM/STEM at the 1 Angstrom (1 A = 0.1 nanometer) level. Observations at close to zero defocus were carried out using the AC-TEM as well as AC-STEM including high angle annular dark field (HAADF) imaging, from the same areas of the catalyst crystallites. The studies from the same areas have revealed the location and the nanostructure of the polytungstate species (clusters) and the nanograins of zirconia. The AC (S)TEM was crucial to observe the nanostructure and location of polytungstate clusters on the zirconia grains. Polytungstate clusters as small as 0.5 nm have been identified using the HAADF-STEM. The nanostructures of the catalyst and the W surface density have been correlated with paracetamol reaction studies. The results demonstrate the nature of active sites and high activity of the tungstated zirconia nanocatalyst, which is an environmentally clean alternative to the current homogeneous process.

  8. Polyvinylidene fluoride molecules in nanofibers, imaged at atomic scale by aberration corrected electron microscopy.

    Lolla, Dinesh; Gorse, Joseph; Kisielowski, Christian; Miao, Jiayuan; Taylor, Philip L; Chase, George G; Reneker, Darrell H

    2016-01-01

    Atomic scale features of polyvinylidene fluoride molecules (PVDF) were observed with aberration corrected transmission electron microscopy. Thin, self-supporting PVDF nanofibers were used to create images that show conformations and relative locations of atoms in segments of polymer molecules, particularly segments near the surface of the nanofiber. Rows of CF2 atomic groups, at 0.25 nm intervals, which marked the paths of segments of the PVDF molecules, were seen. The fact that an electron microscope image of a segment of a PVDF molecule depended upon the particular azimuthal direction, along which the segment was viewed, enabled observation of twist around the molecular axis. The 0.2 nm side-by-side distance between the two fluorine atoms attached to the same carbon atom was clearly resolved. Morphological and chemical changes produced by energetic electrons, ranging from no change to fiber scission, over many orders of magnitude of electrons per unit area, promise quantitative new insights into radiation chemistry. Relative movements of segments of molecules were observed. Promising synergism between high resolution electron microscopy and molecular dynamic modeling was demonstrated. This paper is at the threshold of growing usefulness of electron microscopy to the science and engineering of polymer and other molecules. PMID:26369731

  9. Beam hardening correction algorithm in microtomography images

    Sales, Erika S.; Lima, Inaya C.B.; Lopes, Ricardo T., E-mail: esales@con.ufrj.b, E-mail: ricardo@lin.ufrj.b [Coordenacao dos Programas de Pos-graduacao de Engenharia (COPPE/UFRJ), Rio de Janeiro, RJ (Brazil). Lab. de Instrumentacao Nuclear; Assis, Joaquim T. de, E-mail: joaquim@iprj.uerj.b [Universidade do Estado do Rio de Janeiro (UERJ), Nova Friburgo, RJ (Brazil). Inst. Politecnico. Dept. de Engenharia Mecanica

    2009-07-01

    Quantification of mineral density of bone samples is directly related to the attenuation coefficient of bone. The X-rays used in microtomography images are polychromatic and have a moderately broad spectrum of energy, which makes the low-energy X-rays passing through a sample to be absorbed, causing a decrease in the attenuation coefficient and possibly artifacts. This decrease in the attenuation coefficient is due to a process called beam hardening. In this work the beam hardening of microtomography images of vertebrae of Wistar rats subjected to a study of hyperthyroidism was corrected by the method of linearization of the projections. It was discretized using a spectrum in energy, also called the spectrum of Herman. The results without correction for beam hardening showed significant differences in bone volume, which could lead to a possible diagnosis of osteoporosis. But the data with correction showed a decrease in bone volume, but this decrease was not significant in a confidence interval of 95%. (author)

  10. Beam hardening correction algorithm in microtomography images

    Quantification of mineral density of bone samples is directly related to the attenuation coefficient of bone. The X-rays used in microtomography images are polychromatic and have a moderately broad spectrum of energy, which makes the low-energy X-rays passing through a sample to be absorbed, causing a decrease in the attenuation coefficient and possibly artifacts. This decrease in the attenuation coefficient is due to a process called beam hardening. In this work the beam hardening of microtomography images of vertebrae of Wistar rats subjected to a study of hyperthyroidism was corrected by the method of linearization of the projections. It was discretized using a spectrum in energy, also called the spectrum of Herman. The results without correction for beam hardening showed significant differences in bone volume, which could lead to a possible diagnosis of osteoporosis. But the data with correction showed a decrease in bone volume, but this decrease was not significant in a confidence interval of 95%. (author)

  11. Genetic algorithm for chromaticity correction in diffraction limited storage rings

    Ehrlichman, M. P.

    2016-04-01

    A multiobjective genetic algorithm is developed for optimizing nonlinearities in diffraction limited storage rings. This algorithm determines sextupole and octupole strengths for chromaticity correction that deliver optimized dynamic aperture and beam lifetime. The algorithm makes use of dominance constraints to breed desirable properties into the early generations. The momentum aperture is optimized indirectly by constraining the chromatic tune footprint and optimizing the off-energy dynamic aperture. The result is an effective and computationally efficient technique for correcting chromaticity in a storage ring while maintaining optimal dynamic aperture and beam lifetime.

  12. Optical study on the vision correction and supernormal vision based on the wave-front aberrations of human eye

    MU GuoGuang; WANG ZhaoQi; LIU YongJi; QUAN Wei; WANG Yang; WANG Wei

    2007-01-01

    In this paper we present the recent research results in the field of vision correction and supernormal vision according to the actual measurements of the wave-front aberrations and the corneal surface topography, the clinical detection of the visual function and the laser corneal refractive surgery, and the optimization of the optical system. These include the features of the aberrations of human eye with different pupil sizes, different fields of view and temporal accommodation, the influence of the polychromatic illumination of the visible wavelength on the supernormal vision,and the effect of the existing laser corneal refractive surgery on the wave-front aberrations of the eye. It is shown that the wave-front aberration of human eye is of temporal variation and of synthesis with multi impact factors. To achieve supernormal vision, an optimum engineering data for the customized laser corneal surgery should be firstly acquired, which may involve the dynamic free-form optical surface. Although the myopia can be corrected by the laser in situ keratomileusis (LASlK) in a certain degree, it brings about negative effects under scotopic conditions.

  13. Optical study on the vision correction and supernormal vision based on the wave-front aberrations of human eye

    2007-01-01

    In this paper we present the recent research results in the field of vision correction and supernormal vision according to the actual measurements of the wave-front aberrations and the corneal surface topography,the clinical detection of the visual function and the laser corneal refractive surgery,and the optimization of the optical system. These include the features of the aberrations of human eye with different pupil sizes,different fields of view and temporal accommodation,the influence of the polychromatic illumination of the visible wavelength on the supernormal vision,and the effect of the existing laser corneal refractive surgery on the wave-front ab-errations of the eye. It is shown that the wave-front aberration of human eye is of temporal variation and of synthesis with multi impact factors. To achieve super-normal vision,an optimum engineering data for the customized laser corneal sur-gery should be firstly acquired,which may involve the dynamic free-form optical surface. Although the myopia can be corrected by the laser in situ keratomileusis(LASIK) in a certain degree,it brings about negative effects under scotopic condi-tions.

  14. Correction of cell-induced optical aberrations in a fluorescence fluctuation microscope

    Leroux, Charles-Edouard; Wang, Irène; Delon, Antoine

    2014-01-01

    We describe the effect of optical aberrations on fluorescence fluctuations microscopy (FFM), when focusing through a single living cell. FFM measurements are performed in an aqueous fluorescent solution and prove to be a highly sensitive tool to assess the optical aberrations introduced by the cell. We demonstrate an adaptive optics (AO) system to remove the aberration-related bias in the FFM measurements. Our data show that AO is not only useful when imaging deep in tissues but also when performing FFM measurements through a single cellular layer. This work paves the way for the application of FFM to complex three-dimensional multicellular samples.

  15. Aberration corrected 1.2-MV cold field-emission transmission electron microscope with a sub-50-pm resolution

    Akashi, Tetsuya; Takahashi, Yoshio; Tanigaki, Toshiaki, E-mail: toshiaki.tanigaki.mv@hitachi.com; Shimakura, Tomokazu; Kawasaki, Takeshi; Furutsu, Tadao; Shinada, Hiroyuki; Osakabe, Nobuyuki [Central Research Laboratory, Hitachi, Ltd., Hatoyama 350-0395 (Japan); Müller, Heiko; Haider, Maximilian [Corrected Electron Optical Systems GmbH, Englerstr. 28, D-69126 Heidelberg (Germany); Tonomura, Akira [Central Research Laboratory, Hitachi, Ltd., Hatoyama 350-0395 (Japan); RIKEN Center for Emergent Matter Science (CEMS), Wako 351-0198 (Japan)

    2015-02-16

    Atomic-resolution electromagnetic field observation is critical to the development of advanced materials and to the unveiling of their fundamental physics. For this purpose, a spherical-aberration corrected 1.2-MV cold field-emission transmission electron microscope has been developed. The microscope has the following superior properties: stabilized accelerating voltage, minimized electrical and mechanical fluctuation, and coherent electron emission. These properties have enabled to obtain 43-pm information transfer. On the bases of these performances, a 43-pm resolution has been obtained by correcting lens aberrations up to the third order. Observations of GaN [411] thin crystal showed a projected atomic locations with a separation of 44 pm.

  16. Aberration corrected 1.2-MV cold field-emission transmission electron microscope with a sub-50-pm resolution

    Atomic-resolution electromagnetic field observation is critical to the development of advanced materials and to the unveiling of their fundamental physics. For this purpose, a spherical-aberration corrected 1.2-MV cold field-emission transmission electron microscope has been developed. The microscope has the following superior properties: stabilized accelerating voltage, minimized electrical and mechanical fluctuation, and coherent electron emission. These properties have enabled to obtain 43-pm information transfer. On the bases of these performances, a 43-pm resolution has been obtained by correcting lens aberrations up to the third order. Observations of GaN [411] thin crystal showed a projected atomic locations with a separation of 44 pm

  17. Aberration corrected and monochromated environmental transmission electron microscopy: challenges and prospects for materials science

    Hansen, Thomas Willum; Wagner, Jakob Birkedal; Dunin-Borkowski, Rafal E.

    2010-01-01

    The latest generation of environmental transmission electron microscopes incorporates aberration correctors and monochromators, allowing studies of chemical reactions and growth processes with improved spatial resolution and spectral sensitivity. Here, we describe the performance of such an instr...

  18. Some Considerations Regarding Pulsed Correction of Chromatic Aberrations in Final Focusing Systems

    ; but these forces will remove part of the tilt as the beam compresses. Al Maschke suggested that it is possible to reduce the chromatic aberrations by applying a time-dependent transverse focusing correction to the beam upstream of the final focusing lenses (1). At this point, because of the energy tilt, there is a correlation between longitudinal position in the beam and particle energy. In other words, the average beam energy at the tail of the beam is larger than the average beam energy at the head of the beam. If the beam is completely neutralized as it drifts toward the final focusing lenses, the kinetic energies of the individual particles will remain nearly unchanged during compression. In this case, it is possible, in principle, to apply some 'pre-focusing' to the higher energy particles (those nearer to the tail of the beam) to compensate for their weaker focusing in the final lenses. Although kinetic energies of individual particles are not conserved if the beam is not neutralized, one still expects a positive correlation between the particle energies at the beginning of compression and at the end of compression so correction is still assumed to be possible. It is important that the pulse duration is larger upstream than it is at the final focusing lenses. Larger pulse duration makes it easier, from an engineering standpoint, to supply the power needed to drive the pulsed correction elements. Nevertheless, it still appears impossible or very costly to provide the needed power for some specific cases that have been studied. In the remainder of this paper we ignore this issue and try to determine if there are other fundamental limitations on how well one might correct. We conclude that there are other important limitations.

  19. Detection of Aberrant Data Points for an effective Effort Estimation using an Enhanced Algorithm with Adaptive Features

    S. Sridhar

    2012-01-01

    Full Text Available Problem statement: The spiraling growth of IT industry has witnessed an unprecedented change in the software development paradigm, from algorithmic models to machine learning techniques. At present, there are no standard methods to predict the accuracy of software cost estimation, which is an important goal of the software community. Approach: This study proposes a simple and systematic algorithmic procedure for analogy based software cost prediction to detect the aberrant data points. The algorithm is analyzed and correlated with the Desharnais and NASA datasets containing all adaptive features with numerical and categorical variables. Results: The interpreted curves using the above datasets depict a discernible anomaly for the dataset having more categorical variables, thereby indicating the erroneous data points. Conclusion: The elimination of aberrant data points using the new algorithmic method improves the accuracy of software cost estimation using historical data sets.

  20. The data correction algorithms in 60Co train inspection system

    Because of the physical characteristics of the 60Co train inspection system and the application of high-speed data collection system based on current integral, the original images have been distorted in a certain degree. Authors investigate into the reasons why the distortion comes into being, and accordingly present the data correction algorithm

  1. Algorithmic scatter correction in dual-energy digital mammography

    Chen, Xi; Mou, Xuanqin [Institute of Image Processing and Pattern Recognition, Xi' an Jiaotong University, Xi' an, Shaanxi 710049 (China); Nishikawa, Robert M.; Lau, Beverly A. [Department of Radiology, The University of Chicago, Chicago, Illinois 60637 (United States); Chan, Suk-tak [Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hung Hom (Hong Kong); Zhang, Lei [Department of Computing, The Hong Kong Polytechnic University, Hung Hom (Hong Kong)

    2013-11-15

    Purpose: Small calcifications are often the earliest and the main indicator of breast cancer. Dual-energy digital mammography (DEDM) has been considered as a promising technique to improve the detectability of calcifications since it can be used to suppress the contrast between adipose and glandular tissues of the breast. X-ray scatter leads to erroneous calculations of the DEDM image. Although the pinhole-array interpolation method can estimate scattered radiations, it requires extra exposures to measure the scatter and apply the correction. The purpose of this work is to design an algorithmic method for scatter correction in DEDM without extra exposures.Methods: In this paper, a scatter correction method for DEDM was developed based on the knowledge that scattered radiation has small spatial variation and that the majority of pixels in a mammogram are noncalcification pixels. The scatter fraction was estimated in the DEDM calculation and the measured scatter fraction was used to remove scatter from the image. The scatter correction method was implemented on a commercial full-field digital mammography system with breast tissue equivalent phantom and calcification phantom. The authors also implemented the pinhole-array interpolation scatter correction method on the system. Phantom results for both methods are presented and discussed. The authors compared the background DE calcification signals and the contrast-to-noise ratio (CNR) of calcifications in the three DE calcification images: image without scatter correction, image with scatter correction using pinhole-array interpolation method, and image with scatter correction using the authors' algorithmic method.Results: The authors' results show that the resultant background DE calcification signal can be reduced. The root-mean-square of background DE calcification signal of 1962 μm with scatter-uncorrected data was reduced to 194 μm after scatter correction using the authors' algorithmic method

  2. Comparison of analytical and numerical approaches for CT-based aberration correction in transcranial passive acoustic imaging

    Jones, Ryan M.; Hynynen, Kullervo

    2016-01-01

    Computed tomography (CT)-based aberration corrections are employed in transcranial ultrasound both for therapy and imaging. In this study, analytical and numerical approaches for calculating aberration corrections based on CT data were compared, with a particular focus on their application to transcranial passive imaging. Two models were investigated: a three-dimensional full-wave numerical model (Connor and Hynynen 2004 IEEE Trans. Biomed. Eng. 51 1693-706) based on the Westervelt equation, and an analytical method (Clement and Hynynen 2002 Ultrasound Med. Biol. 28 617-24) similar to that currently employed by commercial brain therapy systems. Trans-skull time delay corrections calculated from each model were applied to data acquired by a sparse hemispherical (30 cm diameter) receiver array (128 piezoceramic discs: 2.5 mm diameter, 612 kHz center frequency) passively listening through ex vivo human skullcaps (n  =  4) to emissions from a narrow-band, fixed source emitter (1 mm diameter, 516 kHz center frequency). Measurements were taken at various locations within the cranial cavity by moving the source around the field using a three-axis positioning system. Images generated through passive beamforming using CT-based skull corrections were compared with those obtained through an invasive source-based approach, as well as images formed without skull corrections, using the main lobe volume, positional shift, peak sidelobe ratio, and image signal-to-noise ratio as metrics for image quality. For each CT-based model, corrections achieved by allowing for heterogeneous skull acoustical parameters in simulation outperformed the corresponding case where homogeneous parameters were assumed. Of the CT-based methods investigated, the full-wave model provided the best imaging results at the cost of computational complexity. These results highlight the importance of accurately modeling trans-skull propagation when calculating CT-based aberration corrections

  3. Double-aberration corrected TEM/STEM of solid acid nanocatalysts in the development of pharmaceutical NSAIDS

    Yoshida, K.; Shiju, N.; Brown, R.; Wright, I.; Boyes, E. D.; Gai, P. L.

    2012-07-01

    We report nanostructural and physico-chemical studies in the development of an efficient low temperature heterogeneous catalytic process for nonsteroidal anti-inflammatory drugs (NSAIDS) such as N-acetyl-p-aminophenol (paracetamol or acetaminophen) on tungstated zirconia nanocatalysts. Using a double-aberration corrected TEM/STEM, modified in-house for in-situ studies at the sub-Angstrom level, we directly observed in real-time, the dynamic precursor transformation to the active catalyst. We quantified the observations with catalytic activity studies for the NSAIDS. The studies have provided the direct evidence for single tungsten promoter atoms and surface WOx species of pharmaceuticals.

  4. Aberration corrected environmental STEM (AC ESTEM) for dynamic in-situ gas reaction studies of nanoparticle catalysts

    Environmental scanning transmission electron microscopy (ESTEM) with aberration correction (AC) has recently been added to the capabilities of the more established ETEM for analysis of heterogeneous nanoparticle based catalysts. It has helped to reveal the importance and potentially unique properties of individual atoms as active sites in their own right as well as pathways between established nanoparticles. A new capability is introduced for dynamic in-situ experiments under controlled conditions of specimen temperature and gas environment related to real world conditions pertinent to a range of industrial and societal priorities for new and improved chemical processes, materials, fuels, pharmaceutical products and processes, and in control or remediation of environmental emissions

  5. Interaction between single gold atom and the graphene edge: A study via aberration-corrected transmission electron microscopy

    Wang, Hongtao

    2012-01-01

    Interaction between single noble metal atoms and graphene edges has been investigated via aberration-corrected and monochromated transmission electron microscopy. A collective motion of the Au atom and the nearby carbon atoms is observed in transition between energy-favorable configurations. Most trapping and detrapping processes are assisted by the dangling carbon atoms, which are more susceptible to knock-on displacements by electron irradiation. Thermal energy is lower than the activation barriers in transition among different energy-favorable configurations, which suggests electron-beam irradiation can be an efficient way of engineering the graphene edge with metal atoms. © 2012 The Royal Society of Chemistry.

  6. [Aberration corrected intraocular lens for microincision cataract surgery (MICS). Intraindividual comparison with a conventional lens - 1-year follow-up].

    Möglich, M; Häberle, H; Pham, D T; Wirbelauer, C

    2009-10-01

    Microincision cataract surgery (MICS) is an important advancement in the field of cataract surgery. This article compares an aberration corrected hydrophilic acrylic intraocular lens (IOL) having a hydrophobic surface for MICS with a one-piece hydrophobic acrylic IOL with respect to capsule sac stability, image quality, and after-cataract formation over the course of 1 year. The operations were performed as bimanual MICS or coaxial phacoemulsification. Overall the results after implantation of the IOL by MICS can be regarded as positive in comparison to the standard operation. PMID:18836727

  7. Crossed aperture lenses for the correction of chromatic and aperture aberrations

    The chromatic and aperture aberrations of crossed five-aperture lenses are analyzed by direct ray tracing. The apertures are rectangular and the voltages are applied in such a way that the first-order properties of the crossed lens are similar to those of a quadrupole doublet. It is shown that in astigmatic modes the chromatic and aperture aberrations of one of the linear images can be simultaneously eliminated or made negative. It is also shown that stigmatic modes exist in which the magnification is different in two perpendicular planes and in which the image blurring caused by the chromatic and aperture aberrations in the direction of smaller magnification is ten times smaller than that given by a round lens of the same focal length and the blurring in the other direction is at least two times smaller. The stigmatic crossed lens also gives a larger working distance than the equivalent round lens. The crossed lens will therefore be preferable for many probe forming systems. copyright 1996 American Institute of Physics

  8. Orbit correction algorithm for SSRF fast orbit feedback system

    LIU Ming; YIN Chongxian; LIU Dekang

    2009-01-01

    A fast orbit feedback system is designed at SSRF to suppress beam orbit disturbance within sub-micron in the bandwidth up to 100 Hz.The SVD (Singular value decomposition) algorithm is applied to calculate the inverse response matrix in global orbit correction.The number of singular eigenvalues will influence orbit noise suppression and corrector strengths.The method to choose singular eigenvalue rejection threshold is studied in this paper,and the simulation and experiment results are also presented.

  9. Full correction for spatially distributed speed-of-sound in echo ultrasound based on measuring aberration delays via transmit beam steering.

    Jaeger, Michael; Robinson, Elise; Akarçay, H Günhan; Frenz, Martin

    2015-06-01

    Aberrations of the acoustic wave front, caused by spatial variations of the speed-of-sound, are a main limiting factor to the diagnostic power of medical ultrasound imaging. If not accounted for, aberrations result in low resolution and increased side lobe level, over all reducing contrast in deep tissue imaging. Various techniques have been proposed for quantifying aberrations by analysing the arrival time of coherent echoes from so-called guide stars or beacons. In situations where a guide star is missing, aperture-based techniques may give ambiguous results. Moreover, they are conceptually focused on aberrators that can be approximated as a phase screen in front of the probe. We propose a novel technique, where the effect of aberration is detected in the reconstructed image as opposed to the aperture data. The varying local echo phase when changing the transmit beam steering angle directly reflects the varying arrival time of the transmit wave front. This allows sensing the angle-dependent aberration delay in a spatially resolved way, and thus aberration correction for a spatially distributed volume aberrator. In phantoms containing a cylindrical aberrator, we achieved location-independent diffraction-limited resolution as well as accurate display of echo location based on reconstructing the speed-of-sound spatially resolved. First successful volunteer results confirm the clinical potential of the proposed technique. PMID:25989072

  10. Full correction for spatially distributed speed-of-sound in echo ultrasound based on measuring aberration delays via transmit beam steering

    Aberrations of the acoustic wave front, caused by spatial variations of the speed-of-sound, are a main limiting factor to the diagnostic power of medical ultrasound imaging. If not accounted for, aberrations result in low resolution and increased side lobe level, over all reducing contrast in deep tissue imaging. Various techniques have been proposed for quantifying aberrations by analysing the arrival time of coherent echoes from so-called guide stars or beacons. In situations where a guide star is missing, aperture-based techniques may give ambiguous results. Moreover, they are conceptually focused on aberrators that can be approximated as a phase screen in front of the probe. We propose a novel technique, where the effect of aberration is detected in the reconstructed image as opposed to the aperture data. The varying local echo phase when changing the transmit beam steering angle directly reflects the varying arrival time of the transmit wave front. This allows sensing the angle-dependent aberration delay in a spatially resolved way, and thus aberration correction for a spatially distributed volume aberrator. In phantoms containing a cylindrical aberrator, we achieved location-independent diffraction-limited resolution as well as accurate display of echo location based on reconstructing the speed-of-sound spatially resolved. First successful volunteer results confirm the clinical potential of the proposed technique. (paper)

  11. Using Automated Image Analysis Algorithms to Distinguish Normal, Aberrant, and Degenerate Mitotic Figures Induced by Eg5 Inhibition.

    Bigley, Alison L; Klein, Stephanie K; Davies, Barry; Williams, Leigh; Rudmann, Daniel G

    2016-07-01

    Modulation of the cell cycle may underlie the toxicologic or pharmacologic responses of a potential therapeutic agent and contributes to decisions on its preclinical and clinical safety and efficacy. The descriptive and quantitative assessment of normal, aberrant, and degenerate mitotic figures in tissue sections is an important end point characterizing the effect of xenobiotics on the cell cycle. Historically, pathologists used manual counting and special staining visualization techniques such as immunohistochemistry for quantification of normal, aberrant, and degenerate mitotic figures. We designed an automated image analysis algorithm for measuring these mitotic figures in hematoxylin and eosin (H&E)-stained sections. Algorithm validation methods used data generated from a subcutaneous human transitional cell carcinoma xenograft model in nude rats treated with the cell cycle inhibitor Eg5. In these studies, we scanned and digitized H&E-stained xenografts and applied a complex ruleset of sequential mathematical filters and shape discriminators for classification of cell populations demonstrating normal, aberrant, or degenerate mitotic figures. The resultant classification system enabled the representations of three identifiable degrees of morphological change associated with tumor differentiation and compound effects. The numbers of mitotic figure variants and mitotic indices data generated corresponded to a manual assessment by a pathologist and supported automated algorithm verification and application for both efficacy and toxicity studies. PMID:26936079

  12. MAGNETIC LIQUID DEFORMABLE MIRRORS FOR ASTRONOMICAL APPLICATIONS: ACTIVE CORRECTION OF OPTICAL ABERRATIONS FROM LOWER-GRADE OPTICS AND SUPPORT SYSTEM

    Borra, E. F., E-mail: borra@phy.ulaval.ca [Departement de Physique, de Genie Physique et d' Optique, Universite Laval, Quebec, QC G1V 0A6 (Canada)

    2012-08-01

    Deformable mirrors are increasingly used in astronomy. However, they still are limited in stroke for active correction of high-amplitude optical aberrations. Magnetic liquid deformable mirrors (MLDMs) are a new technology that has the advantages of high-amplitude deformations and low costs. In this paper, we demonstrate extremely high strokes and interactuator strokes achievable by MLDMs which can be used in astronomical instrumentation. In particular, we consider the use of such a mirror to suggest an interesting application for the next generation of large telescopes. We present a prototype 91 actuator deformable mirror made of a magnetic liquid (ferrofluid). This mirror uses a technique that linearizes the response of such mirrors by superimposing a large and uniform magnetic field on the magnetic field produced by an array of small coils. We discuss experimental results that illustrate the performance of MLDMs. A most interesting application of MLDMs comes from the fact they could be used to correct the aberrations of large and lower optical quality primary mirrors held by simple support systems. We estimate basic parameters of the needed MLDMs, obtaining reasonable values.

  13. Depth-resolution imaging of crystalline nanoclusters attached on and embedded in amorphous films using aberration-corrected TEM

    Yamasaki, Jun, E-mail: yamasaki@uhvem.osaka-u.ac.jp [Research Center for Ultra-High Voltage Electron Microscopy, Osaka University, 7-1 Mihogaoka, Ibaraki, Osaka 567-0047 (Japan); EcoTopia Science Institute, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603 (Japan); Mori, Masayuki [Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603 (Japan); Hirata, Akihiko [Advanced Institute for Materials Research, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Hirotsu, Yoshihiko [Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047 (Japan); Tanaka, Nobuo [EcoTopia Science Institute, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603 (Japan)

    2015-04-15

    For observations of crystalline nanoclusters, the features and capabilities of depth-resolution imaging by aberration-corrected transmission electron microscopy (TEM) were investigated using image simulations and experiments for two types of samples. The first sample was gold clusters attached on an amorphous carbon film. The experimental through-focal series indicated that the focal plane for the cluster was shifted 3 nm from that for the supporting film. This difference is due to the depth-resolution imaging of the cluster and film, the mid-planes of which are separated by 3 nm along the depth direction (the electron incident direction). On the basis of this information, the three-dimensional configuration of the sample, such as the film thickness of 2 nm, was successfully illustrated. The second sample was a Zr{sub 66.7}Ni{sub 33.3} metallic glass including a medium-range-order (MRO) structure, which was approximately considered to be a crystalline cluster with a diameter of 1.6 nm. In the experimental through-focal series, the lattice fringe of the MRO cluster was visible at limited focal conditions. Image simulations reproduced well the focal conditions and also indicated a structural condition for the visualization that the embedded cluster must be apart from the mid-plane of the matrix film. Similar to the case of the first sample, this result can be explained by the idea that the “effective focal planes” for the film and cluster are at different heights. This type of depth-resolution phase contrast imaging is possible only in aberration-corrected TEM and when the sample has a simple structure and is sufficiently thin for the kinematical scattering approximation. - Highlights: • Depth-resolution imaging by aberration-corrected TEM was demonstrated. • Thickness of a carbon film supporting gold nano-crystals was successfully estimated. • A crystalline nanocluster embedded in an amorphous matrix was successfully observed. • It was clarified that

  14. Depth-resolution imaging of crystalline nanoclusters attached on and embedded in amorphous films using aberration-corrected TEM

    For observations of crystalline nanoclusters, the features and capabilities of depth-resolution imaging by aberration-corrected transmission electron microscopy (TEM) were investigated using image simulations and experiments for two types of samples. The first sample was gold clusters attached on an amorphous carbon film. The experimental through-focal series indicated that the focal plane for the cluster was shifted 3 nm from that for the supporting film. This difference is due to the depth-resolution imaging of the cluster and film, the mid-planes of which are separated by 3 nm along the depth direction (the electron incident direction). On the basis of this information, the three-dimensional configuration of the sample, such as the film thickness of 2 nm, was successfully illustrated. The second sample was a Zr66.7Ni33.3 metallic glass including a medium-range-order (MRO) structure, which was approximately considered to be a crystalline cluster with a diameter of 1.6 nm. In the experimental through-focal series, the lattice fringe of the MRO cluster was visible at limited focal conditions. Image simulations reproduced well the focal conditions and also indicated a structural condition for the visualization that the embedded cluster must be apart from the mid-plane of the matrix film. Similar to the case of the first sample, this result can be explained by the idea that the “effective focal planes” for the film and cluster are at different heights. This type of depth-resolution phase contrast imaging is possible only in aberration-corrected TEM and when the sample has a simple structure and is sufficiently thin for the kinematical scattering approximation. - Highlights: • Depth-resolution imaging by aberration-corrected TEM was demonstrated. • Thickness of a carbon film supporting gold nano-crystals was successfully estimated. • A crystalline nanocluster embedded in an amorphous matrix was successfully observed. • It was clarified that only clusters

  15. Multirobot FastSLAM Algorithm Based on Landmark Consistency Correction

    Shi-Ming Chen

    2014-01-01

    Full Text Available Considering the influence of uncertain map information on multirobot SLAM problem, a multirobot FastSLAM algorithm based on landmark consistency correction is proposed. Firstly, electromagnetism-like mechanism is introduced to the resampling procedure in single-robot FastSLAM, where we assume that each sampling particle is looked at as a charged electron and attraction-repulsion mechanism in electromagnetism field is used to simulate interactive force between the particles to improve the distribution of particles. Secondly, when multiple robots observe the same landmarks, every robot is regarded as one node and Kalman-Consensus Filter is proposed to update landmark information, which further improves the accuracy of localization and mapping. Finally, the simulation results show that the algorithm is suitable and effective.

  16. Flux-corrected transport principles, algorithms, and applications

    Kuzmin, Dmitri; Turek, Stefan

    2005-01-01

    Addressing students and researchers as well as CFD practitioners, this book describes the state of the art in the development of high-resolution schemes based on the Flux-Corrected Transport (FCT) paradigm. Intended for readers who have a solid background in Computational Fluid Dynamics, the book begins with historical notes by J.P. Boris and D.L. Book. Review articles that follow describe recent advances in the design of FCT algorithms as well as various algorithmic aspects. The topics addressed in the book and its main highlights include: the derivation and analysis of classical FCT schemes with special emphasis on the underlying physical and mathematical constraints; flux limiting for hyperbolic systems; generalization of FCT to implicit time-stepping and finite element discretizations on unstructured meshes and its role as a subgrid scale model for Monotonically Integrated Large Eddy Simulation (MILES) of turbulent flows. The proposed enhancements of the FCT methodology also comprise the prelimiting and '...

  17. Aerosol Retrieval and Atmospheric Correction Algorithms for EPIC

    Wang, Y.; Lyapustin, A.; Marshak, A.; Korkin, S.; Herman, J. R.

    2011-12-01

    EPIC is a multi-spectral imager onboard planned Deep Space Climate ObserVatoRy (DSCOVR) designed for observations of the full illuminated disk of the Earth with high temporal and coarse spatial resolution (10 km) from Lagrangian L1 point. During the course of the day, EPIC will view the same Earth surface area in the full range of solar and view zenith angles at equator with fixed scattering angle near the backscattering direction. This talk will describe a new aerosol retrieval/atmospheric correction algorithm developed for EPIC and tested with EPIC Simulator data. This algorithm uses the time series approach and consists of two stages: the first stage is designed to periodically re-initialize the surface spectral bidirectional reflectance (BRF) on stable low AOD days. Such days can be selected based on the same measured reflectance between the morning and afternoon reciprocal view geometries of EPIC. On the second stage, the algorithm will monitor the diurnal cycle of aerosol optical depth and fine mode fraction based on the known spectral surface BRF. Testing of the developed algorithm with simulated EPIC data over continental USA showed a good accuracy of AOD retrievals (10-20%) except over very bright surfaces.

  18. Characterization of surface metallic states in SrTiO3 by means of aberration corrected electron microscopy.

    Sánchez-Santolino, G; Tornos, J; Bruno, F Y; Cuellar, F A; Leon, C; Santamaría, J; Pennycook, S J; Varela, M

    2013-04-01

    An unusual conducting surface state can be produced in SrTiO3 substrates by irradiation with Argon ions from a plasma source, at low energy and high doses. The effects of irradiation are analyzed here by atomic force microscopy (AFM) and aberration corrected scanning transmission electron microscopy (STEM) combined with electron energy loss spectroscopy (EELS). Depth sensitive studies demonstrate the existence of a heavily damaged surface layer and an oxygen vacancy rich layer immediately underneath, both induced during the irradiation process. We find a clear dependence of the Ti oxidation state with the depth, with a very intense Ti(3+) component near the surface. Oxygen vacancies act as n-type doping by releasing electrons into the lattice and producing an insulator-to-metal transition, which explains the unusual metallic behavior of these samples. PMID:22940531

  19. Structural transformation of tungsten oxide nanourchins into IF-WS2 nanoparticles: an aberration corrected STEM study

    Leonard-Deepak, Francis; Castro-Guerrero, Carlos Fernando; Mejía-Rosales, Sergio; José-Yacamán, Miguel

    2011-12-01

    IF-WS2 nanoparticles synthesized starting from tungsten oxide nanourchins have been investigated by using aberration corrected scanning transmission electron microscopy (Cs-STEM). The synthesis process produced IF-WS2 nanoparticles of two different and well differentiated ranges of size. High resolution HAADF-STEM images and their comparison with simulated STEM micrographs reveal the predominance of stacking of the type 1T close to the border of the structure; the observation of this kind of stacking, observed previously in IF-MoS2 but never reported before in the case of the IF-WS2 nanostructures, adds a new dimension to the existing understanding of structure and stacking in the case of the nanostructures of transition metal chalcogenides.IF-WS2 nanoparticles synthesized starting from tungsten oxide nanourchins have been investigated by using aberration corrected scanning transmission electron microscopy (Cs-STEM). The synthesis process produced IF-WS2 nanoparticles of two different and well differentiated ranges of size. High resolution HAADF-STEM images and their comparison with simulated STEM micrographs reveal the predominance of stacking of the type 1T close to the border of the structure; the observation of this kind of stacking, observed previously in IF-MoS2 but never reported before in the case of the IF-WS2 nanostructures, adds a new dimension to the existing understanding of structure and stacking in the case of the nanostructures of transition metal chalcogenides. Electronic supplementary information (ESI) available: Raman spectra of the WOx-W18O49 nanourchins, XRD pattern, EDAX spectrum and elemental maps of the IF-WS2 nanoparticles. See DOI: 10.1039/c1nr10862j

  20. Numerical computation of arbitrary order transfer maps and reconstructive correction of aberrations in the large acceptance spectrometer MAGNEX

    Shchepunov, V.A. E-mail: shchepun@sunhe.jinr.rushchepunov@lns.infn.it; Cunsolo, A.; Cappuzzello, F.; Foti, A.; Lazzaro, A.; Melita, A.L.; Nociforo, C.; Winfield, J.S

    2003-05-01

    The large angular ({approx}50 msr) and momentum ({approx}20%) acceptance spectrometer MAGNEX is under construction at the South National Laboratories INFN. In the spectrometer, positions of ions in two planes near the focal plane and their vertical positions near the target are measured. The energy resolution of about 1000 is achieved due to the use of the reconstruction of trajectories and reconstructive correction of aberrations. Main features of the spectrometer ion optics are considered. A numerical method of calculation of an arbitrary order transfer map is proposed. In this method, a transfer map is calculated using, as input, initial and final coordinates of a set of rays in an ion-optical system. The rays start at the nods of a regular multi-dimensional mesh in the particle phase space. Rays of the set are chosen automatically according to the order and dimension of the map to be calculated. Final coordinates of the rays are calculated with a regular numerical integration. The proposed is, in fact, a general (ray tracing based) method of calculation of a transfer map, of any order and dimension, for an arbitrary ion-optical system. The method has been used for numerical simulations of the reconstructive correction of aberrations in the MAGNEX spectrometer. Simulation results are considered. A C++ class library has been developed to realize the proposed transfer map calculation method. Elementary operations with vectors and maps, both being C++ objects, are realized as C++ operator functions. The map order is defined by a user at the moment of initialization of the corresponding map object. Its maximum value is limited only by an available computer memory. Computational aspects of the method are discussed in brief.

  1. Development of Topological Correction Algorithms for ADCP Multibeam Bathymetry Measurements

    Yang, Sung-Kee; Kim, Dong-Su; Kim, Soo-Jeong; Jung, Woo-Yul

    2013-04-01

    Acoustic Doppler Current Profilers (ADCPs) are increasingly popular in the river research and management communities being primarily used for estimation of stream flows. ADCPs capabilities, however, entail additional features that are not fully explored, such as morphologic representation of river or reservoir bed based upon multi-beam depth measurements. In addition to flow velocity, ADCP measurements include river bathymetry information through the depth measurements acquired in individual 4 or 5 beams with a given oblique angle. Such sounding capability indicates that multi-beam ADCPs can be utilized as an efficient depth-sounder to be more capable than the conventional single-beam eco-sounders. The paper introduces the post-processing algorithms required to deal with raw ADCP bathymetry measurements including the following aspects: a) correcting the individual beam depths for tilt (pitch and roll); b) filtering outliers using SMART filters; d) transforming the corrected depths into geographical coordinates by UTM conversion; and, e) tag the beam detecting locations with the concurrent GPS information; f) spatial representation in a GIS package. The developed algorithms are applied for the ADCP bathymetric dataset acquired from Han-Cheon in Juju Island to validate their applicability.

  2. Aberration-corrected scanning transmission electron microscopy for complex transition metal oxides

    Qing-Hua, Zhang; Dong-Dong, Xiao; Lin, Gu

    2016-06-01

    Lattice, charge, orbital, and spin are the four fundamental degrees of freedom in condensed matter, of which the interactive coupling derives tremendous novel physical phenomena, such as high-temperature superconductivity (high-T c SC) and colossal magnetoresistance (CMR) in strongly correlated electronic system. Direct experimental observation of these freedoms is essential to understanding the structure-property relationship and the physics behind it, and also indispensable for designing new materials and devices. Scanning transmission electron microscopy (STEM) integrating multiple techniques of structure imaging and spectrum analysis, is a comprehensive platform for providing structural, chemical and electronic information of materials with a high spatial resolution. Benefiting from the development of aberration correctors, STEM has taken a big breakthrough towards sub-angstrom resolution in last decade and always steps forward to improve the capability of material characterization; many improvements have been achieved in recent years, thereby giving an in-depth insight into material research. Here, we present a brief review of the recent advances of STEM by some representative examples of perovskite transition metal oxides; atomic-scale mapping of ferroelectric polarization, octahedral distortions and rotations, valence state, coordination and spin ordering are presented. We expect that this brief introduction about the current capability of STEM could facilitate the understanding of the relationship between functional properties and these fundamental degrees of freedom in complex oxides. Project supported by the National Key Basic Research Project, China (Grant No. 2014CB921002), the Strategic Priority Research Program of Chinese Academy of Sciences (Grant No. XDB07030200), and the National Natural Science Foundation of China (Grant Nos. 51522212 and 51421002).

  3. Opto-Mechanical Model of Arcuates for Astigmatism Correction. Low and High Order Aberrations

    Navarro, Rafael; Palos, Fernando; Lanchares, Elena; Calvo, Begoña; Cristóbal, José Angel

    2011-01-01

    To develop a realistic model of the opto-mechanical behaviour of the cornea after curved relaxing incisions, and compare the astigmatism correction predicted by the model with that of the Lindstrom's nomogram. Methods: A three-dimensional finite element model of the anterior hemisphere of the ocular surface was generated, considering three parts: cornea, limbus and sclera. The corneal tissue was modeled as a quasiincompressible, anisotropic hyperelastic constitutive behaviour s...

  4. Holographic Properties of BR-D96N Film and Its Application in Hologram Aberration Correction

    ZHENG Yuan(郑媛); YAO Bao-Li(姚保利); WANG Ying-Li(王英利); MENKE Neimule(门克内木乐); LEI Ming(雷铭); CHEN Guo-Fu(陈国夫); Norbert HAMPP

    2003-01-01

    A biophotochromic material, i.e., genetic mutant bacteriorhodopsin (BR-D96N), was experimentally studied on its holographic recording properties. The saturation absorption curve and the diffraction efficiency curve were measured respectively. As holographic storage application, reflection type polarization holograms were recorded on the BR-D96N film. The 173° configuration between the object and reference beams proves that the spatial resolution of the film is over 6000 lines/mm. By using phase conjugate wave of reference beam as reconstruction beam, the distorted object image introduced by the optical components and the defects in the recording medium can be well corrected.

  5. Algorithms for muscle oxygenation monitoring corrected for adipose tissue thickness

    Geraskin, Dmitri; Platen, Petra; Franke, Julia; Kohl-Bareis, Matthias

    2007-07-01

    The measurement of skeletal muscle oxygenation by NIRS methods is obstructed by the subcutaneous adipose tissue which might vary between muscle haemoglobin / myoglobin concentrations. First, we demonstrate by comparison with ultrasound imaging that the optical lipid signal peaking at 930 nm is a good predictor of the adipose tissue thickness (ATT). Second, the algorithm is based on measurements of the wavelength dependence of the slope ΔA/Δρ of attenuation A with respect to source detector distance ρ and Monte Carlo simulations which estimate the muscle absorption coefficient based on this slope and the additional information of the ATT. Third, we illustrate the influence of the wavelength dependent transport scattering coefficient of the new algorithm by using the solution of the diffusion equation for a two-layered turbid medium. This method is tested on experimental data measured on the vastus lateralis muscle of volunteers during an incremental cycling exercise under normal and hypoxic conditions (corresponding to 0, 2000 and 4000 m altitude). The experimental setup uses broad band detection between 700 and 1000 nm at six source-detector distances. We demonstrate that the description of the experimental data as judged by the residual spectrum is significantly improved and the calculated changes in oxygen saturation are markedly different when the ATT correction is included.

  6. Reply to L.M. Brown et al. "Brief history of the Cambridge STEM aberration correction project and its progeny" in Ultramicroscopy 157, 88 (2015).

    Urban, K W; Rose, H

    2016-02-01

    We comment on a Short Communication recently published in Ultramicroscopy in which Brown et al. criticize our description of the time sequence of events in the development of aberration correction systems in electron optics during the 1990s put forward in the introduction to the Ultramicroscopy April 2015 Special Issue. We present an analysis of the published literature furnishing evidence that our description is correct. PMID:26624509

  7. Canopy induced aberration correction in airborne electro-optical imaging systems

    Harder, James A.; Sprague, Michaelene W.

    2011-11-01

    An increasing number of electro-optical systems are being used by pilots in tactical aircraft. This means that the afore mentioned systems must operate through the aircrafts canopy, unfortunately the canopy functions as a less than ideal lens element in the electro-optical sensor optical path. The canopy serves first and foremost as an aircraft structural component, considerations like minimizing the drag co-efficient and the ability to survive bird strikes take precedence over achieving optimal optical characteristics. This paper describes how the authors characterized the optical characteristics of an aircraft canopy. Families of modulation transfer functions were generated, for various viewing geometries through the canopy and for various electro-optical system entrance pupil diameters. These functions provided us with the means to significantly reduce the effect of the canopy "lens" on the performance of a representative electro-optical system, using an Astigmatic Corrector Lens. A comparison of the electro-optical system performance with and without correction is also presented.

  8. Correção das aberrações oculares nos retratamentos de LASIK personalizado e convencional Correction of ocular aberrations in custom and standard LASIK retreatments

    Andréia Peltier Urbano

    2009-10-01

    Full Text Available OBJETIVO: Comparar a correção das aberrações oculares nos retratamentos de LASIK personalizado e convencional. MÉTODOS: Foi realizado um estudo prospectivo, randomizado, de 74 olhos de 37 pacientes submetidos ao retratamento de LASIK para correção de miopia e astigmatismo. Cada paciente foi submetido ao retratamento de LASIK personalizado Zyoptix (Bausch & Lomb em um olho e convencional Planoscan (Bausch & Lomb no olho contralateral. Foi comparada a correção das aberrações oculares nos retratamentos personalizado e convencional. RESULTADOS: No sexto mês pós-operatório, os olhos submetidos ao retratamento Zyoptix apresentaram diminuição estatisticamente significativa do defocus, astigmatismo, coma, aberração esférica, segunda ordem, terceira ordem, alta ordem e aberrações totais. Os olhos submetidos ao retratamento Planoscan apresentaram diminuição estatisticamente significativa do defocus, segunda ordem e aberrações totais. CONCLUSÕES: O retratamento personalizado foi superior ao retratamento convencional para a correção das aberrações oculares de baixa e alta ordens.PURPOSE: To compare the correction of ocular aberrations between custom and standard LASIK retreatment. METHODS: Prospective, randomized trial with paired eye control of 74 eyes from 37 patients who underwent LASIK retreatment. Each patient underwent retreatment using Zyoptix LASIK (Bausch & Lomb in 1 eye and Planoscan LASIK (Bausch & Lomb in the fellow eye. Correction of ocular aberrations was compared between custom and standard LASIK retreatments. RESULTS: At 6 months, there was a statistically significant reduction in defocus, astigmatism, coma, spherical aberration, second, third, higher-order and total aberration in Zyoptix eyes. There was a statistically significant reduction in defocus, second-order and total aberration in Planoscan eyes. CONCLUSIONS: Custom retreatment was statistically superior than standard retreatment for correction of lower

  9. Wavefront correction for static and dynamic aberrations to within 1 second of the system shot in the NIF Beamlet demonstration facility

    The laser wavefront of the NIF Beamlet demonstration system is corrected for static aberrations with a wavefront control system. The system operates closed loop with a probe beam prior to a shot and has a loop bandwidth of about 3 Hz. However, until recently the wavefront control system was disabled several minutes prior to the shot to allow time to manually reconfigure its attenuators and probe beam insertion mechanism to shot mode. Thermally-induced dynamic variations in gas density in the Beamlet main beam line produce significant wavefront error. After about 5-8 seconds, the wavefront error has increased to a new, higher level due to turbulence- induced aberrations no longer being corrected- This implies that there is a turbulence-induced aberration noise bandwidth of less than one Hertz, and that the wavefront controller could correct for the majority of turbulence-induced aberration (about one- third wave) by automating its reconfiguration to occur within one second of the shot, This modification was recently implemented on Beamlet; we call this modification the t0-1 system

  10. Double-aberration corrected TEM/STEM of solid acid nanocatalysts in the development of pharmaceutical NSAIDS

    We report nanostructural and physico-chemical studies in the development of an efficient low temperature heterogeneous catalytic process for nonsteroidal anti-inflammatory drugs (NSAIDS) such as N-acetyl-p-aminophenol (paracetamol or acetaminophen) on tungstated zirconia nanocatalysts. Using a double-aberration corrected TEM/STEM, modified in-house for in-situ studies at the sub-Angstrom level, we directly observed in real-time, the dynamic precursor transformation to the active catalyst. We quantified the observations with catalytic activity studies for the NSAIDS. The studies have provided the direct evidence for single tungsten promoter atoms and surface WOx species of ≤ 0.35 nm, with nanoclusters of WOx (0.6 to 1nm), located at grain boundaries on the surface of the zirconia nanoparticles. The correlation between the nanostructure and catalytic activity indicates that the species create Broensted acid sites highly active for the low temperature process. The results open up opportunities for developing green heterogeneous methods for pharmaceuticals.

  11. Morphological evolution of InAs/InP quantum wires through aberration-corrected scanning transmission electron microscopy.

    Sales, D L; Varela, M; Pennycook, S J; Galindo, P L; González, L; González, Y; Fuster, D; Molina, S I

    2010-08-13

    Evolution of the size, shape and composition of self-assembled InAs/InP quantum wires through the Stranski-Krastanov transition has been determined by aberration-corrected Z-contrast imaging. High resolution compositional maps of the wires in the initial, intermediate and final formation stages are presented. (001) is the main facet at their very initial stage of formation, which is gradually reduced in favour of [114] or [118], ending with the formation of mature quantum wires with {114} facets. Significant changes in wire dimensions are measured when varying slightly the amount of InAs deposited. These results are used as input parameters to build three-dimensional models that allow calculation of the strain energy during the quantum wire formation process. The observed morphological evolution is explained in terms of the calculated elastic energy changes at the growth front. Regions of the wetting layer close to the nanostructure perimeters have higher strain energy, causing migration of As atoms towards the quantum wire terraces, where the structure is partially relaxed; the thickness of the wetting layer is reduced in these zones and the island height increases until the (001) facet is removed. PMID:20647625

  12. Morphological evolution of InAs/InP quantum wires through aberration-corrected scanning transmission electron microscopy

    Evolution of the size, shape and composition of self-assembled InAs/InP quantum wires through the Stranski-Krastanov transition has been determined by aberration-corrected Z-contrast imaging. High resolution compositional maps of the wires in the initial, intermediate and final formation stages are presented. (001) is the main facet at their very initial stage of formation, which is gradually reduced in favour of {114} or {118}, ending with the formation of mature quantum wires with {114} facets. Significant changes in wire dimensions are measured when varying slightly the amount of InAs deposited. These results are used as input parameters to build three-dimensional models that allow calculation of the strain energy during the quantum wire formation process. The observed morphological evolution is explained in terms of the calculated elastic energy changes at the growth front. Regions of the wetting layer close to the nanostructure perimeters have higher strain energy, causing migration of As atoms towards the quantum wire terraces, where the structure is partially relaxed; the thickness of the wetting layer is reduced in these zones and the island height increases until the (001) facet is removed.

  13. Numerical computation of arbitrary order transfer maps and reconstructive correction of aberrations in the large acceptance spectrometer MAGNEX

    Shchepunov, V A; Cappuzzello, F; Foti, A; Lazzaro, A; Melita, A L; Nociforo, C; Winfield, J S

    2003-01-01

    The large angular (approx 50 msr) and momentum (approx 20%) acceptance spectrometer MAGNEX is under construction at the South National Laboratories INFN. In the spectrometer, positions of ions in two planes near the focal plane and their vertical positions near the target are measured. The energy resolution of about 1000 is achieved due to the use of the reconstruction of trajectories and reconstructive correction of aberrations. Main features of the spectrometer ion optics are considered. A numerical method of calculation of an arbitrary order transfer map is proposed. In this method, a transfer map is calculated using, as input, initial and final coordinates of a set of rays in an ion-optical system. The rays start at the nods of a regular multi-dimensional mesh in the particle phase space. Rays of the set are chosen automatically according to the order and dimension of the map to be calculated. Final coordinates of the rays are calculated with a regular numerical integration. The proposed is, in fact, a ge...

  14. Magnetic liquid deformable mirrors for astronomical applications:Active correction of optical aberrations from lower-grade optics and support system

    Borra, E F

    2012-01-01

    Deformable mirrors are increasingly used in astronomy. However, they still are limited in stroke for active correction of high amplitude optical aberrations. Magnetic Liquid deformable mirrors (MLDMs) are a new technology that has advantages of high-amplitude deformations and low costs. In this paper we demonstrate extremely high strokes and inter-actuator strokes achievable by MLDMs which can be used in astronomical instrumentation. In particular, we consider the use of such a mirror to suggest an interesting application for the next generation of large telescopes. We present a prototype 91-actuator deformable mirror made of a magnetic liquid (ferrofluid). This mirror uses a technique that linearizes the response of such mirrors by superimposing a large and uniform magnetic field to the magnetic field produced by an array of small coils. We discuss experimental results that illustrate the performance of MLDMs. A most interesting application of MLDMs comes from the fact they could be used to correct the aberr...

  15. Design and Performance Characteristics of the ORNL Advanced Microscopy Laboratory and JEOL 2200FS-AC Aberration-Corrected STEM/TEM

    Lawrence F. Allard; Douglas A. Blom; O'Keefe, Michael A.; Mishina, S.

    2005-01-01

    At ORNL, the new Advanced Microscopy Laboratory (AML) has recently been completed, with two aberration-corrected instruments installed, and two more planned in the near future to fill the 4-laboratory building. The installed JEOL 2200FS-AC has demonstrated a TEM information limit of 0.9A. This limit is expected given the measured instrument parameters (HT and OL power supply stabilities, beam energy spread, etc.), and illustrates that the environmental influences are not adversely affect...

  16. Study on battery state of charge correct algorithm of electric vehicle

    KAN Ping; QIAN Lijun

    2012-01-01

    State of Charge (SOC) is used to adjust the initialization SOC value so as to make electric vehicle simulation results close to real vehicle performance. This paper firstly analyses the battery SOC correct algorithm, then uses ADVISOR which is a electric vehicle simulation software to simulate a hybrid electric car with three different cases of no SOC correct, linear SOC correct and zero delta SOC correct, as well as makes the compare and analysis for those simulation results. In the end, an overall conclusion to SOC correct algorithm is given.

  17. In-situ Study of Dynamic Phenomena at Metal Nanosolder Interfaces Using Aberration Corrected Scanning Transmission Electron Microcopy.

    Lu, Ping

    2014-10-01

    Controlling metallic nanoparticle (NP) interactions plays a vital role in the development of new joining techniques (nanosolder) that bond at lower processing temperatures but remain viable at higher temperatures. The pr imary objective of this project is t o develop a fundamental understanding of the actual reaction processes, associated atomic mechanisms, and the resulting microstructure that occur during thermally - driven bond formation concerning metal - metal nano - scale (<50nm) interfaces. In this LDRD pr oject, we have studied metallic NPs interaction at the elevated temperatures by combining in - situ transmission electron microscopy (TEM ) using an aberration - corrected scanning transmission electron microscope (AC - STEM) and atomic - scale modeling such as m olecular dynamic (MD) simulations. Various metallic NPs such as Ag, Cu and Au are synthesized by chemical routines. Numerous in - situ e xperiments were carried out with focus of the research on study of Ag - Cu system. For the first time, using in - situ STEM he ating experiments , we directly observed t he formation of a 3 - dimensional (3 - D) epitaxial Cu - Ag core - shell nanoparticle during the thermal interaction of Cu and Ag NPs at elevated temperatures (150 - 300 o C). The reaction takes place at temperatures as low as 150 o C and was only observed when care was taken to circumvent the effects of electron beam irradiation during STEM imaging. Atomic - scale modeling verified that the Cu - Ag core - shell structure is energetically favored, and indicated that this phenomenon is a nano - scale effect related to the large surface - to - volume ratio of the NPs. The observation potentially can be used for developing new nanosolder technology that uses Ag shell as the %22glue%22 that stic ks the particles of Cu together. The LDRD has led to several journal publications and numerous conference presentations, and a TA. In addition, we have developed new TEM characterization techniques and phase

  18. Correction of oral contrast artifacts in CT-based attenuation correction of PET images using an automated segmentation algorithm

    Ahmadian, Alireza; Ay, Mohammad R.; Sarkar, Saeed [Medical Sciences/University of Tehran, Research Center for Science and Technology in Medicine, Tehran (Iran); Medical Sciences/University of Tehran, Department of Medical Physics and Biomedical Engineering, School of Medicine, Tehran (Iran); Bidgoli, Javad H. [Medical Sciences/University of Tehran, Research Center for Science and Technology in Medicine, Tehran (Iran); East Tehran Azad University, Department of Electrical and Computer Engineering, Tehran (Iran); Zaidi, Habib [Geneva University Hospital, Division of Nuclear Medicine, Geneva (Switzerland)

    2008-10-15

    Oral contrast is usually administered in most X-ray computed tomography (CT) examinations of the abdomen and the pelvis as it allows more accurate identification of the bowel and facilitates the interpretation of abdominal and pelvic CT studies. However, the misclassification of contrast medium with high-density bone in CT-based attenuation correction (CTAC) is known to generate artifacts in the attenuation map ({mu}map), thus resulting in overcorrection for attenuation of positron emission tomography (PET) images. In this study, we developed an automated algorithm for segmentation and classification of regions containing oral contrast medium to correct for artifacts in CT-attenuation-corrected PET images using the segmented contrast correction (SCC) algorithm. The proposed algorithm consists of two steps: first, high CT number object segmentation using combined region- and boundary-based segmentation and second, object classification to bone and contrast agent using a knowledge-based nonlinear fuzzy classifier. Thereafter, the CT numbers of pixels belonging to the region classified as contrast medium are substituted with their equivalent effective bone CT numbers using the SCC algorithm. The generated CT images are then down-sampled followed by Gaussian smoothing to match the resolution of PET images. A piecewise calibration curve was then used to convert CT pixel values to linear attenuation coefficients at 511 keV. The visual assessment of segmented regions performed by an experienced radiologist confirmed the accuracy of the segmentation and classification algorithms for delineation of contrast-enhanced regions in clinical CT images. The quantitative analysis of generated {mu}maps of 21 clinical CT colonoscopy datasets showed an overestimation ranging between 24.4% and 37.3% in the 3D-classified regions depending on their volume and the concentration of contrast medium. Two PET/CT studies known to be problematic demonstrated the applicability of the technique

  19. Algorithms for Relative Radiometric Correction in Earth Observing Systems Resource-P and Canopus-V

    Zenin, V. A.; Eremeev, V. V.; Kuznetcov, A. E.

    2016-06-01

    The present paper has considered two algorithms of the relative radiometric correction of information obtained from a multimatrix imagery instrument of the spacecraft "Resource-P" and frame imagery systems of the spacecraft "Canopus-V". The first algorithm is intended for elimination of vertical stripes on the image that are caused by difference in transfer characteristics of CCD matrices and CCD detectors. Correction coefficients are determined on the basis of analysis of images that are homogeneous by brightness. The second algorithm ensures an acquisition of microframes homogeneous by brightness from which seamless images of the Earth surface are synthesized. Examples of practical usage of the developed algorithms are mentioned.

  20. Nonuniformity correction algorithm based on Gaussian mixture model

    Mou, Xin-gang; Zhang, Gui-lin; Hu, Ruo-lan; Zhou, Xiao

    2011-08-01

    As an important tool to acquire information of target scene, infrared detector is widely used in imaging guidance field. Because of the limit of material and technique, the performance of infrared imaging system is known to be strongly affected by the spatial nonuniformity in the photoresponse of the detectors in the array. Temporal highpass filter(THPF) is a popular adaptive NUC algorithm because of its simpleness and effectiveness. However, there still exists the problem of ghosting artifact in the algorithms caused by blind update of parameters, and the performance is noticeably degraded when the methods are applied over scenes with lack of motion. In order to tackle with this problem, a novel adaptive NUC algorithm based on Gaussian mixed model (GMM) is put forward according to traditional THPF. The drift of the detectors is assumed to obey a single Gaussian distribution, and the update of the parameters is selectively performed based on the scene. GMM is applied in the new algorithm for background modeling, in which the background is updated selectively so as to avoid the influence of the foreground target on the update of the background, thus eliminating the ghosting artifact. The performance of the proposed algorithm is evaluated with infrared image sequences with simulated and real fixed-pattern noise. The results show a more reliable fixed-pattern noise reduction, tracking the parameter drift, and presenting a good adaptability to scene changes.

  1. QR Code Image Correction based on Corner Detection and Convex Hull Algorithm

    Suran Kong

    2013-12-01

    Full Text Available Since the angular deviation produced when shooting a QR code image by a camera would cause geometric distortion of the QR code image, the traditional algorithm of QR code image correction would produce distortion. Therefore this paper puts forward the algorithm which combines corner detection with convex hull algorithm. Firstly, binaryzation of the collected QR code image with uneven light is obtained by the methods of local threshold and mathematical morphology. Next, the outline of the QR code and the dots on it are found and the distorted image is recovered by perspective collineation, according to the algorithm raised by this paper. Finally, experimental verification is made that the algorithm raised by this paper can correctly find the four apexes of QR code and achieves good effects of geometric correction. It will also significantly increase the recognition rate of seriously distorted QR code images

  2. Efficient Algorithms for Searching Optimal Shortened Cyclic Single-Burst-Correcting Codes

    Villalba, Luis Javier García; Cortez, José René Fuentes; Orozco, Ana Lucila Sandoval; Blaum, Mario

    2011-01-01

    In a previous work it was shown that the best measure for the efficiency of a single burst-correcting code is obtained using the Gallager bound as opposed to the Reiger bound. In this paper, an efficient algorithm that searches for the best (shortened) cyclic burst-correcting codes is presented. Using this algorithm, extensive tables that either tie existing constructions or improve them are obtained for burst lengths up to b=10.

  3. Structural investigation of precipitates with Cu and Zn atomic columns in Al-Mg-Si alloys by aberration-corrected HAADF-STEM

    Precipitates in Al-Mg-Si alloys with Cu addition (∼0.1 wt%) and Zn addition (∼1 wt%) were investigated by aberration corrected high angle annular dark field scanning transmission electron microscopy (HAADF-STEM). Most precipitates had no overall unit cell but contained ordered network of Si atomic columns for both the Cu and the Zn containing precipitates. It was found that both Cu and Zn atomic columns are located at specific sites and producing characteristic local configurations on the Si atomic columns

  4. QR Code Image Correction based on Corner Detection and Convex Hull Algorithm

    Suran Kong

    2013-01-01

    Since the angular deviation produced when shooting a QR code image by a camera would cause geometric distortion of the QR code image, the traditional algorithm of QR code image correction would produce distortion. Therefore this paper puts forward the algorithm which combines corner detection with convex hull algorithm. Firstly, binaryzation of the collected QR code image with uneven light is obtained by the methods of local threshold and mathematical morphology. Next, the outline of the QR c...

  5. FAILURE CORRECTION OF LINEAR ARRAY ANTENNA WITH MULTIPLE NULL PLACEMENT USING CUCKOO SEARCH ALGORITHM

    Muralidaran, R.; A. Vallavaraj; Hemant Patidar; Mahanti, G. K.

    2014-01-01

    The influence of evolutionary algorithms enhanced its scope of getting its existence in almost every complex optimization problems. In this paper, cuckoo search algorithm, an algorithm based on the brood parasite behavior along with Levy weights has been proposed for the radiation pattern correction of a linear array of isotropic antennas with uniform spacing when failed with more than one antenna element. Even though deterioration produced by the failure of antenna elements results in variou...

  6. Algorithm-supported visual error correction (AVEC) of heart rate measurements in dogs, Canis lupus familiaris.

    Schöberl, Iris; Kortekaas, Kim; Schöberl, Franz F; Kotrschal, Kurt

    2015-12-01

    Dog heart rate (HR) is characterized by a respiratory sinus arrhythmia, and therefore makes an automatic algorithm for error correction of HR measurements hard to apply. Here, we present a new method of error correction for HR data collected with the Polar system, including (1) visual inspection of the data, (2) a standardized way to decide with the aid of an algorithm whether or not a value is an outlier (i.e., "error"), and (3) the subsequent removal of this error from the data set. We applied our new error correction method to the HR data of 24 dogs and compared the uncorrected and corrected data, as well as the algorithm-supported visual error correction (AVEC) with the Polar error correction. The results showed that fewer values were identified as errors after AVEC than after the Polar error correction (p strings with deleted values seemed to be closer to the original data than were those with inserted means. We concluded that our method of error correction is more suitable for dog HR and HR variability than is the customized Polar error correction, especially because AVEC decreases the likelihood of Type I errors, preserves the natural variability in HR, and does not lead to a time shift in the data. PMID:25540125

  7. A Genetic Algorithm for Chromaticity Correction in Diffraction Limited Storage Rings

    Ehrlichman, Michael

    2016-01-01

    An multi-objective genetic algorithm is developed for optimizing nonlinearities in diffraction limited storage rings. This algorithm determines sextupole and octupole strengths for chromaticity correction that deliver optimized dynamic aperture and beam lifetime. The algorithm makes use of dominance constraints to breed desirable properties into the early generations. The momentum aperture is optimized indirectly by constraining the chromatic tune footprint and optimizing the off-energy dynamic aperture. The result is an effective and computationally efficient technique for correcting chromaticity in a storage ring while maintaining optimal dynamic aperture and beam lifetime. This framework was developed for the Swiss Light Source (SLS) upgrade project.

  8. Self-Correcting HVAC Controls: Algorithms for Sensors and Dampers in Air-Handling Units

    Fernandez, Nicholas; Brambley, Michael R.; Katipamula, Srinivas

    2009-12-31

    This report documents the self-correction algorithms developed in the Self-Correcting Heating, Ventilating and Air-Conditioning (HVAC) Controls project funded jointly by the Bonneville Power Administration and the Building Technologies Program of the U.S. Department of Energy. The algorithms address faults for temperature sensors, humidity sensors, and dampers in air-handling units and correction of persistent manual overrides of automated control systems. All faults considered create energy waste when left uncorrected as is frequently the case in actual systems.

  9. Operative correction of ocular aberrations to improve visual acuity%波前像差引导的LASIK术矫正眼球像差

    Theo Seiler; Michael Mrochen; Maik Kaemmerer

    2001-01-01

    目的:观察波前像差引导的LASIK术矫正人眼像差后的效果,以确定人眼是否可获得超过一般的视敏度。方法:波前像差引导的LASIK手术对15只眼矫正近视和散光,同时矫正眼球的像差。结果:手术后1个月时,4只眼(占27%)获得了20/10以上的超常视力。波前像差的均方根值从0.6增加到2.3,与视觉敏感度的提高呈显著性相关(P<0.05)。结论:像差的矫正虽然还不能最令人满意,但这些结果表明,眼球的像差使人眼视敏度受限制,而通过手术矫正可获得超过一般的视敏度。%Objective:Optical aberrations of the human eye degrade the quality of the retinal image and may,therefore,represent a major limit of visual acuity.Methods:In 15 eyes,ocular aberrations were corrected in addition to myopia and astigmatism by means of wavefront-guided laser in situ keratomileusis(LASIK).Results:At 1 month after surgery,a supernormal visual acuity of 20/10 or better was obtained in 4 eyes(27%). The increase in root mean square wavefront error ranged from 0.6 to 2.3 and was significantly correlated with the increase in visual acuity(P<0.05).Conclusion:Although the correction of aberrations was not yet optimal,these results show that ocular optical aberrations limit visual acuity in humans and supernormal visual acuity can be achieved by operative correction.

  10. Post-Editing Error Correction Algorithm for Speech Recognition using Bing Spelling Suggestion

    Bassil, Youssef

    2012-01-01

    ASR short for Automatic Speech Recognition is the process of converting a spoken speech into text that can be manipulated by a computer. Although ASR has several applications, it is still erroneous and imprecise especially if used in a harsh surrounding wherein the input speech is of low quality. This paper proposes a post-editing ASR error correction method and algorithm based on Bing's online spelling suggestion. In this approach, the ASR recognized output text is spell-checked using Bing's spelling suggestion technology to detect and correct misrecognized words. More specifically, the proposed algorithm breaks down the ASR output text into several word-tokens that are submitted as search queries to Bing search engine. A returned spelling suggestion implies that a query is misspelled; and thus it is replaced by the suggested correction; otherwise, no correction is performed and the algorithm continues with the next token until all tokens get validated. Experiments carried out on various speeches in differen...

  11. Nonuniformity correction algorithm with nonlinear model for infrared focal plane arrays

    Zhou, Hui-xin; Qin, Han-lin; Bai, Li-ping; Liu, Qun-chang; Geng, Xu; Wang, Bin-jian

    2010-01-01

    For the detector in infrared focal plane arrays (IRFPA) with a large dynamic range of response, a nonlinear model of response curve of the detector in IRFPA is introduced in this paper. With the model, the Kalman-filter nonuniformity correction (NUC) algorithm with linear model, developed by Torres and Hayat, is extended. In the extended algorithm, the raw image is translated into a linearized one firstly by directly employing a logarithm-based transformation. Then the linearized image is corrected by the Kalman-filter NUC algorithm with linear model, and the corrected linearized image is obtained. Finally the uniformity image of the original one is achieved by fulfilling an exponent transformation to the corrected linearized image. The presented algorithm not only inherits the advantage of the original algorithm that resolves the problem of the temporal drift in the gain and the bias in each detector by updating NUC parameters with information of the current scene, but also reduce the influence of the detector nonlinear response to the NUC performance, so it is suitable for IRFPA under large response-range. The NUC ability of the presented algorithm is demonstrated by experiments with real infrared image sequences.

  12. A polytime proof of correctness of the Rabin-Miller algorithm from Fermat's little theorem

    Herman, Grzegorz

    2008-01-01

    Although a deterministic polytime algorithm for primality testing is now known, the Rabin-Miller randomized test of primality continues being the most efficient and widely used algorithm. We prove the correctness of the Rabin-Miller algorithm in the theory V1 for polynomial time reasoning, from Fermat's little theorem. This is interesting because the Rabin-Miller algorithm is a polytime randomized algorithm, which runs in the class RP (i.e., the class of polytime Monte-Carlo algorithms), with a sampling space exponential in the length of the binary encoding of the input number. (The class RP contains polytime P.) However, we show how to express the correctness in the language of V1, and we also show that we can prove the formula expressing correctness with polytime reasoning from Fermat's Little theorem, which is generally expected to be independent of V1. Our proof is also conceptually very basic in the sense that we use the extended Euclid's algorithm, for computing greatest common divisors, as the main wor...

  13. An Uneven Illumination Correction Algorithm for Optical Remote Sensing Images Covered with Thin Clouds

    Xiaole Shen

    2015-09-01

    Full Text Available The uneven illumination phenomenon caused by thin clouds will reduce the quality of remote sensing images, and bring adverse effects to the image interpretation. To remove the effect of thin clouds on images, an uneven illumination correction can be applied. In this paper, an effective uneven illumination correction algorithm is proposed to remove the effect of thin clouds and to restore the ground information of the optical remote sensing image. The imaging model of remote sensing images covered by thin clouds is analyzed. Due to the transmission attenuation, reflection, and scattering, the thin cloud cover usually increases region brightness and reduces saturation and contrast of the image. As a result, a wavelet domain enhancement is performed for the image in Hue-Saturation-Value (HSV color space. We use images with thin clouds in Wuhan area captured by QuickBird and ZiYuan-3 (ZY-3 satellites for experiments. Three traditional uneven illumination correction algorithms, i.e., multi-scale Retinex (MSR algorithm, homomorphic filtering (HF-based algorithm, and wavelet transform-based MASK (WT-MASK algorithm are performed for comparison. Five indicators, i.e., mean value, standard deviation, information entropy, average gradient, and hue deviation index (HDI are used to analyze the effect of the algorithms. The experimental results show that the proposed algorithm can effectively eliminate the influences of thin clouds and restore the real color of ground objects under thin clouds.

  14. Aberration-corrected transmission electron microscopy analyses of GaAs/Si interfaces in wafer-bonded multi-junction solar cells

    Aberration-corrected scanning transmission electron microscopy (STEM) and electron energy loss spectroscopy (EELS) investigations have been applied to investigate the structure and composition fluctuations near interfaces in wafer-bonded multi-junction solar cells. Multi-junction solar cells are of particular interest since efficiencies well above 40% have been obtained for concentrator solar cells which are based on III-V compound semiconductors. In this methodologically oriented investigation, we explore the potential of combining aberration-corrected high-angle annular dark-field STEM imaging (HAADF-STEM) with spectroscopic techniques, such as EELS and energy-dispersive X-ray spectroscopy (EDXS), and with high-resolution transmission electron microscopy (HR-TEM), in order to analyze the effects of fast atom beam (FAB) and ion beam bombardment (IB) activation treatments on the structure and composition of bonding interfaces of wafer-bonded solar cells on Si substrates. Investigations using STEM/EELS are able to measure quantitatively and with high precision the widths and the fluctuations in element distributions within amorphous interface layers of nanometer extensions, including those of light elements. Such measurements allow the control of the activation treatments and thus support assessing electrical conductivity phenomena connected with impurity and dopant distributions near interfaces for optimized performance of the solar cells. - Highlights: • Aberration-corrected TEM and EELS reveal structural and elemental profiles across GaAs/Si bond interfaces in wafer-bonded GaInP/GaAs/Si - multi-junction solar cells. • Fluctuations in elemental concentration in nanometer-thick amorphous interface layers, including the disrubutions of light elements, are measured using EELS. • The projected widths of the interface layers are determined on the atomic scale from STEM-HAADF measurements. • The effects of atom and ion beam activation treatment on the bonding

  15. Correction of chromatic aberration for human eyes with diffractive-refractive hybrid elements%应用折-衍射元件校正人眼色差

    张梅; 耿征

    2012-01-01

    A chromatic corrector with two refractive-diffractive hybrid elements is designed for a wide field-of- view of 14° to correct chromatic aberrations in human eyes. The performance of the corrector based on several optical criteria is compared with a chromatic eorrector with single refractive-diffractive element. Results show that both correctors can correct for Longitudinal Chromatic Aberration(LCA). However, it is demonstrated that the chromatic corrector with a single element introduces serious eccentric Transverse Chromatic Aberration (TCA) that increases from 14. 61μm to 81.4μm. This deteriorates the image quality at the edge field-of- view. On the chromatic eorreetor with two refractive-diffractive elements, both the LCA and the TCA can be corrected and the TCA is just 1.64μm. The designed chromatic corrector can be used to improve the retinal image quality and has potential applications in the design of visual instruments.%提出了采用两个折射-衍射元件对人眼系统在14°范围内进行色差校正的光学系统设计方法。基于系统光学性能的评价与单片折射-衍射元件色差校正系统的对比验证了本文提出的色差校正系统的性能。结果表明:两种色差校正系统都可以很好地校正人眼的轴向色差。但是,单片折射一衍射色差校正系统引入了横向色差,其由校正前的14.51μm增加到81.4μm,严重影响了边缘视场处的成像质量。而采用双片折射一衍射元件的色差校正系统可同时对轴向色差和横向色差进行校正,使横向色差降为1.64μm。设计的色差校正系统可有效提高视网膜的成像质量,并可用于视觉仪器。

  16. The generation algorithm of arbitrary polygon animation based on dynamic correction

    Hou Ya Wei

    2016-01-01

    Full Text Available This paper, based on the key-frame polygon sequence, proposes a method that makes use of dynamic correction to develop continuous animation. Firstly we use quadratic Bezier curve to interpolate the corresponding sides vector of polygon sequence consecutive frame and realize the continuity of animation sequences. And then, according to Bezier curve characteristic, we conduct dynamic regulation to interpolation parameters and implement the changing smoothness. Meanwhile, we take use of Lagrange Multiplier Method to correct the polygon and close it. Finally, we provide the concrete algorithm flow and present numerical experiment results. The experiment results show that the algorithm acquires excellent effect.

  17. Effect of oxygen stoichiometry in LuFe2O(4-δ) and its microstructure observed by aberration-corrected transmission electron microscopy.

    Yang, H X; Tian, H F; Wang, Z; Qin, Y B; Ma, C; Li, J Q; Cheng, Z Y; Yu, R; Zhu, J

    2012-10-31

    A series of oxygen deficient LuFe(2)O(4-δ) materials have been prepared under a controlled oxygen partial-pressure atmosphere. Measurements of magnetization reveal that the increase of oxygen deficiencies could evidently depress the ferrimagnetic phase transition temperature (T(N)). In additional to the well-known charge ordering within the (11(-)0) crystal plane, a visible structural modulation with q = (0,1/4.2,7/8) commonly appears on the (100) plane in the oxygen deficient samples. An aberration-corrected transmission electron microscopy study on the oxygen deficient samples demonstrates the presence of oxygen vacancies and local structural distortion. The atomic structural features in correlation with the structural modulation, distortion of the FeO(5) polyhedron and the (001) twinning domains have been also examined. PMID:23032863

  18. A ‘jump-to-coalescence’ mechanism during nanoparticle growth revealed by in situ aberration-corrected transmission electron microscopy observations

    Neng, Wan; Shuang-ying, Lei; Jun, Xu; Martini, Matteo

    2016-05-01

    In this work, we used in situ aberration-corrected transmission electron microscopy (AC-TEM) to observe the coalescence of gold nanoparticles. We observed a critical edge-to-edge distance {d}ec∼ 0.5 {nm} below which the two particles will coalesce rapidly (jump-to-coalescence). A model based on the single-atom-triggered rapid particle contraction was proposed and verified by first-principles calculations, in which evident energy decrease was detected when adding a gold atom between two gold nanoparticles. Our ex situ TEM study of sputtering-deposited gold nanoparticles on different substrates with varied time also supports the jump-to-contact mechanism. This observation afforded physical insight into the fundamental growth mechanism during dynamic particle coalescence processes.

  19. Direct imaging of crystal structure and defects in metastable Ge2Sb2Te5 by quantitative aberration-corrected scanning transmission electron microscopy

    Knowledge about the atomic structure and vacancy distribution in phase change materials is of foremost importance in order to understand the underlying mechanism of fast reversible phase transformation. In this Letter, by combining state-of-the-art aberration-corrected scanning transmission electron microscopy with image simulations, we are able to map the local atomic structure and composition of a textured metastable Ge2Sb2Te5 thin film deposited by pulsed laser deposition with excellent spatial resolution. The atomic-resolution scanning transmission electron microscopy investigations display the heterogeneous defect structure of the Ge2Sb2Te5 phase. The obtained results are discussed. Highly oriented Ge2Sb2Te5 thin films appear to be a promising approach for further atomic-resolution investigations of the phase change behavior of this material class

  20. Assessment, Validation, and Refinement of the Atmospheric Correction Algorithm for the Ocean Color Sensors. Chapter 19

    Wang, Menghua

    2003-01-01

    The primary focus of this proposed research is for the atmospheric correction algorithm evaluation and development and satellite sensor calibration and characterization. It is well known that the atmospheric correction, which removes more than 90% of sensor-measured signals contributed from atmosphere in the visible, is the key procedure in the ocean color remote sensing (Gordon and Wang, 1994). The accuracy and effectiveness of the atmospheric correction directly affect the remotely retrieved ocean bio-optical products. On the other hand, for ocean color remote sensing, in order to obtain the required accuracy in the derived water-leaving signals from satellite measurements, an on-orbit vicarious calibration of the whole system, i.e., sensor and algorithms, is necessary. In addition, it is important to address issues of (i) cross-calibration of two or more sensors and (ii) in-orbit vicarious calibration of the sensor-atmosphere system. The goal of these researches is to develop methods for meaningful comparison and possible merging of data products from multiple ocean color missions. In the past year, much efforts have been on (a) understanding and correcting the artifacts appeared in the SeaWiFS-derived ocean and atmospheric produces; (b) developing an efficient method in generating the SeaWiFS aerosol lookup tables, (c) evaluating the effects of calibration error in the near-infrared (NIR) band to the atmospheric correction of the ocean color remote sensors, (d) comparing the aerosol correction algorithm using the singlescattering epsilon (the current SeaWiFS algorithm) vs. the multiple-scattering epsilon method, and (e) continuing on activities for the International Ocean-Color Coordinating Group (IOCCG) atmospheric correction working group. In this report, I will briefly present and discuss these and some other research activities.

  1. Multiprocessing and Correction Algorithm of 3D-models for Additive Manufacturing

    Anamova, R. R.; Zelenov, S. V.; Kuprikov, M. U.; Ripetskiy, A. V.

    2016-07-01

    This article addresses matters related to additive manufacturing preparation. A layer-by-layer model presentation was developed on the basis of a routing method. Methods for correction of errors in the layer-by-layer model presentation were developed. A multiprocessing algorithm for forming an additive manufacturing batch file was realized.

  2. Verification of the ASTER/TIR atmospheric correction algorithm based on water surface emissivity retrieved

    Tonooka, Hideyuki; Palluconi, Frank D.

    2002-02-01

    The standard atmospheric correction algorithm for five thermal infrared (TIR) bands of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is currently based on radiative transfer computations with global assimilation data on a pixel-by-pixel basis. In the present paper, we verify this algorithm using 100 ASTER scenes globally acquired during the early mission period. In this verification, the max-min difference (MMD) of the water surface emissivity retrieved from each scene is used as an atmospheric correction error index, since the water surface emissivity is well known; if the MMD retrieved is large, an atmospheric correction error also will be possibly large. As the results, the error of the MMD retrieved by the standard atmospheric correction algorithm and a typical temperature/emissivity separation algorithm is shown to be remarkably related with precipitable water vapor, latitude, elevation, and surface temperature. It is also mentioned that the expected error on the MMD retrieved is 0.05 for the precipitable water vapor of 3 cm.

  3. Comparison of Adaptive Optics and Phase-Conjugate Mirrors for Correction of Aberrations in Double-Pass Amplifiers

    Jackel, Steven; Moshe, Inon; Lavi, Raphy

    2003-02-01

    Correction of birefringence-induced effects (depolarization and bipolar focusing) were achieved in double-pass amplifiers by use of a Faraday rotator between the laser rod and the retroreflecting optic. A necessary condition was ray retrace. Retrace was limited by imperfect conjugate-beam fidelity and by nonreciprocal refractive indices. We compared various retroreflectors: stimulated-Brillouin-scatter phase-conjugate mirrors (PCMs), PCMs with rod-to-PCM relay imaging (IPCM), IPCMs with astigmatism-correcting adaptive optics, and all-adaptive-optics imaging variable-radius mirrors. Results with flash-lamp-pumped, Nd:Cr:GSGG double-pass amplifiers showed the superiority of adaptive optics over nonlinear optics retroreflectors in terms of maximum average power, improved beam quality, and broader oscillator pulse duration /bandwidth operating range. Hybrid PCM-adaptive optics retroreflectors yielded intermediate power /beam-quality results.

  4. Distortion correction algorithm for UAV remote sensing image based on CUDA

    In China, natural disasters are characterized by wide distribution, severe destruction and high impact range, and they cause significant property damage and casualties every year. Following a disaster, timely and accurate acquisition of geospatial information can provide an important basis for disaster assessment, emergency relief, and reconstruction. In recent years, Unmanned Aerial Vehicle (UAV) remote sensing systems have played an important role in major natural disasters, with UAVs becoming an important technique of obtaining disaster information. UAV is equipped with a non-metric digital camera with lens distortion, resulting in larger geometric deformation for acquired images, and affecting the accuracy of subsequent processing. The slow speed of the traditional CPU-based distortion correction algorithm cannot meet the requirements of disaster emergencies. Therefore, we propose a Compute Unified Device Architecture (CUDA)-based image distortion correction algorithm for UAV remote sensing, which takes advantage of the powerful parallel processing capability of the GPU, greatly improving the efficiency of distortion correction. Our experiments show that, compared with traditional CPU algorithms and regardless of image loading and saving times, the maximum acceleration ratio using our proposed algorithm reaches 58 times that using the traditional algorithm. Thus, data processing time can be reduced by one to two hours, thereby considerably improving disaster emergency response capability

  5. FAILURE CORRECTION OF LINEAR ARRAY ANTENNA WITH MULTIPLE NULL PLACEMENT USING CUCKOO SEARCH ALGORITHM

    R. Muralidaran

    2014-03-01

    Full Text Available The influence of evolutionary algorithms enhanced its scope of getting its existence in almost every complex optimization problems. In this paper, cuckoo search algorithm, an algorithm based on the brood parasite behavior along with Levy weights has been proposed for the radiation pattern correction of a linear array of isotropic antennas with uniform spacing when failed with more than one antenna element. Even though deterioration produced by the failure of antenna elements results in various undesirable effects, consideration in this paper is given to the correction of side lobe level and null placement at two places. Various articles in the past have already shown that the idea to correct the radiation pattern is to alter the amplitude weights of the remaining unfailed elements, instead of replacing the faulty elements. This approach is made use of modifying the current excitations of unfailed elements using cuckoo search algorithm such that the resulting radiation pattern is similar to the unfailed original pattern in terms of side lobe level and null placement at two places. Examples shown in this paper demonstrate the effectiveness of this algorithm in achieving the desired objectives.

  6. A FORTRAN algorithm for correcting normal resistivity logs for borehole diameter and mud resistivity

    Scott, James Henry

    1978-01-01

    The FORTRAN algorithm described in this report was developed for applying corrections to normal resistivity logs of any electrode spacing for the effects of drilling mud of known resistivity in boreholes of variable diameter. The corrections are based on Schlumberger departure curves that are applicable to normal logs made with a standard Schlumberger electric logging probe with an electrode diameter of 8.5 cm (3.35 in). The FORTRAN algorithm has been generalized to accommodate logs made with other probes with different electrode diameters. Two simplifying assumptions used by Schlumberger in developing the departure curves also apply to the algorithm: (1) bed thickness is assumed to be infinite (at least 10 times larger than the electrode spacing), and (2) invasion of drilling mud into the formation is assumed to be negligible. * The use of a trade name does not necessarily constitute endorsement by the U.S. Geological Survey.

  7. A scene-based nonuniformity correction algorithm based on fuzzy logic

    Huang, Jun; Ma, Yong; Fan, Fan; Mei, Xiaoguang; Liu, Zhe

    2015-08-01

    Scene-based nonuniformity correction algorithms based on the LMS adaptive filter are quite efficient to reduce the fixed pattern noise in infrared images. They are famous for their low cost of computation and storage recourses. Unfortunately, ghosting artifacts can be easily introduced in edge areas when the inter-frame motion slows. In this paper, a gated scene-based nonuniformity correction algorithm is proposed. A novel low-pass filter based on the fuzzy logic is proposed to estimate the true scene radiation as the desired signal in the LMS adaptive filter. The fuzzy logic can also evaluate the probability that a pixel and its locals belong to edge areas. Then the update of the correction parameters for the pixels in edge areas can be gated. The experiment results show that our method is reliable and the ghosting artifacts are reduced.

  8. Comparison of two heterogeneity correction algorithms in pituitary gland treatments with intensity-modulated radiation therapy

    The dose accuracy calculated by a treatment planning system is directly related to the chosen algorithm. Nowadays, several calculation doses algorithms are commercially available and they differ in calculation time and accuracy, especially when individual tissue densities are taken into account. The aim of this study was to compare two different calculation algorithms from iPlan®, BrainLAB, in the treatment of pituitary gland tumor with intensity-modulated radiation therapy (IMRT). These tumors are located in a region with variable electronic density tissues. The deviations from the plan with no heterogeneity correction were evaluated. To initial validation of the data inserted into the planning system, an IMRT plan was simulated in a anthropomorphic phantom and the dose distribution was measured with a radiochromic film. The gamma analysis was performed in the film, comparing it with dose distributions calculated with X-ray Voxel Monte Carlo (XVMC) algorithm and pencil beam convolution (PBC). Next, 33 patients plans, initially calculated by PBC algorithm, were recalculated with XVMC algorithm. The treatment volumes and organs-at-risk dose-volume histograms were compared. No relevant differences were found in dose-volume histograms between XVMC and PBC. However, differences were obtained when comparing each plan with the plan without heterogeneity correction. (author)

  9. Evaluation of two Vaisala RS92 radiosonde solar radiative dry bias correction algorithms

    Dzambo, Andrew M.; Turner, David D.; Mlawer, Eli J.

    2016-04-01

    Solar heating of the relative humidity (RH) probe on Vaisala RS92 radiosondes results in a large dry bias in the upper troposphere. Two different algorithms (Miloshevich et al., 2009, MILO hereafter; and Wang et al., 2013, WANG hereafter) have been designed to account for this solar radiative dry bias (SRDB). These corrections are markedly different with MILO adding up to 40 % more moisture to the original radiosonde profile than WANG; however, the impact of the two algorithms varies with height. The accuracy of these two algorithms is evaluated using three different approaches: a comparison of precipitable water vapor (PWV), downwelling radiative closure with a surface-based microwave radiometer at a high-altitude site (5.3 km m.s.l.), and upwelling radiative closure with the space-based Atmospheric Infrared Sounder (AIRS). The PWV computed from the uncorrected and corrected RH data is compared against PWV retrieved from ground-based microwave radiometers at tropical, midlatitude, and arctic sites. Although MILO generally adds more moisture to the original radiosonde profile in the upper troposphere compared to WANG, both corrections yield similar changes to the PWV, and the corrected data agree well with the ground-based retrievals. The two closure activities - done for clear-sky scenes - use the radiative transfer models MonoRTM and LBLRTM to compute radiance from the radiosonde profiles to compare against spectral observations. Both WANG- and MILO-corrected RHs are statistically better than original RH in all cases except for the driest 30 % of cases in the downwelling experiment, where both algorithms add too much water vapor to the original profile. In the upwelling experiment, the RH correction applied by the WANG vs. MILO algorithm is statistically different above 10 km for the driest 30 % of cases and above 8 km for the moistest 30 % of cases, suggesting that the MILO correction performs better than the WANG in clear-sky scenes. The cause of this

  10. Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images.

    Zhao, Jianhua; Brubaker, Marcus A; Benlekbir, Samir; Rubinstein, John L

    2015-11-01

    Single particle electron cryomicroscopy (cryo-EM) allows for structures of proteins and protein complexes to be determined from images of non-crystalline specimens. Cryo-EM data analysis requires electron microscope images of randomly oriented ice-embedded protein particles to be rotated and translated to allow for coherent averaging when calculating three-dimensional (3D) structures. Rotation of 2D images is usually done with the assumption that the magnification of the electron microscope is the same in all directions. However, due to electron optical aberrations, this condition is not met with some electron microscopes when used with the settings necessary for cryo-EM with a direct detector device (DDD) camera. Correction of images by linear interpolation in real space has allowed high-resolution structures to be calculated from cryo-EM images for symmetric particles. Here we describe and compare a simple real space method, a simple Fourier space method, and a somewhat more sophisticated Fourier space method to correct images for a measured anisotropy in magnification. Further, anisotropic magnification causes contrast transfer function (CTF) parameters estimated from image power spectra to have an apparent systematic astigmatism. To address this problem we develop an approach to adjust CTF parameters measured from distorted images so that they can be used with corrected images. The effect of anisotropic magnification on CTF parameters provides a simple way of detecting magnification anisotropy in cryo-EM datasets. PMID:26087140

  11. An improved TES algorithm based on the corrected ALPHA difference spectrum

    TANG ShiHao; LI XiaoWen; WANG JinDi; ZHU QiJiang; ZHANG LiHua

    2007-01-01

    Different from visible signals, thermal infrared radiances depend on both temperature and emissivity. It is a key problem for us to separate temperature and emissivity in thermal infrared remote sensing research. Another difficulty encountered in the retrieval of surface temperature is the correction of downwelling sky irradiance, because it is closely related to surface emissivity. When emissivity is unknown, the downwelling sky irradiance is difficult to be removed. In this paper, we introduce a correction term of downwelling sky irradiance developed by Li and Becker into Wien's approximation, to derive an improved ALPHA difference spectrum which is independent of temperature, and furthermore develop a correction term to remove the error of Wien's approximation. Under the support of the above work, attractive features of Alpha derived emissivity method and ASTER TES algorithm are combined together to acquire a new Improved TES algorithm based on Corrected ALPHA Difference Spectrum (ICADS TES). Because a multi-band inversion technique is applied, and the operations of band ratios and differences are included in the algorithm, it can partly remove the influence of atmosphere and noises. Numerical simulation experiments show that for various combinations of atmosphere, land covers and surface temperatures, the algorithm is applicable and stable. Its accuracy for temperature is 0―1.5 K, and that for emissivity is 0―0.015. Compared with current TES algorithms, our method has clear physical meaning, is easy to be implemented, and is applicable for a wide temperature range and surface types. The results are not influenced by the directional characteristic of emissivity. Because ICADS TES does not need the support of a priori information of surface types, it is also not influenced by the accuracy of classification and the problem of mixture pixels. Compared with our former TES algorithm based on corrected Alpha difference spectra (CADS TES), the new algorithm takes

  12. Assessing heterogeneity correction algorithms using the Radiological Physics Center's anthropomorphic thorax phantom

    The Radiological Physics Center (RPC) was established as a resource in radiation dosimetry and physics for cooperative clinical trial groups and radiotherapy facilities that deliver radiation treatments to patients entered onto cooperative group protocols. The RPC's primary responsibility is to assure NCI and the cooperative groups that the participating institutions deliver radiation treatments that are clinically comparable to those delivered by other institutions in the cooperative groups. One of the remote audit techniques used by the RPC to assure NCI is to credential institutions using its anthropomorphic phantoms, i.e. an end to end test from imaging to planning to final dose delivery as if the phantom were an actual patient. With the recent the implementation of several lung protocols requiring heterogeneity corrected target doses, the RPC, through its credentialing activities have evaluated numerous heterogeneity correction algorithms as used in various treatment planning systems. These systems include Elekta Pinnacle superposition convolution (SC) (adaptive convolve and collapsed cone) algorithms, Varian Eclipse pencil beam (PB) and AAA algorithms, TomoTherapy planning station SC, Accuray Multiplan PB and Monte Carlo (MC) algorithms, Nomos Corvus PB, CMS XiO SC, BrainLab PB and Elekta PrecisePlan Clarkson algorithm

  13. Chromosomal aberration

    Chromosomal aberrations are classified into two types, chromosome-type and chromatid-type. Chromosom-type aberrations include terminal deletion, dicentric, ring and interstitial deletion, and chromatid-type aberrations include achromatic lesion, chromatid deletion, isochromatid deletion and chromatid exchange. Clastogens which induce chromosomal aberration are divided into ''S-dependent'' agents and ''S-independent''. It might mean whether they can induce double strand breaks independent of the S phase or not. Double strand breaks may be the ultimate lesions to induce chromosomal aberrations. Caffeine added even in the G2 phase appeared to modify the frequency of chromatid aberrations induced by X-rays and mitomycin C. Those might suggest that the G2 phase involves in the chromatid aberration formation. The double strand breaks might be repaired by ''G2 repair system'', the error of which might yield breakage types of chromatid aberrations and the by-pass of which might yield chromatid exchanges. Chromosome-type aberrations might be formed in the G1 phase. (author)

  14. A Comparative Dosimetric Analysis of the Effect of Heterogeneity Corrections Used in Three Treatment Planning Algorithms

    Herrick, Andrea Celeste

    Successful treatment in radiation oncology relies on the evaluation of a plan for each individual patient based on delivering the maximum dose to the tumor while sparing the surrounding normal tissue (organs at risk) in the patient. Organs at risk (OAR) typically considered include the heart, the spinal cord, healthy lung tissue, and any other organ in the vicinity of the target that is not affected by the disease being treated. Depending on the location of the tumor and its proximity to these OARs, several plans may be created and evaluated in order to assess which "solution" most closely meets all of the specified criteria. In order to successfully review a treatment plan and take the correct course of action, a physician needs to rely on the computer model (treatment planning algorithm) of dose distribution to reconstruct CT scan data to proceed with the plan that best achieves all of the goals. There are many available treatment planning systems from which a Radiation Oncology center can choose from. While the radiation interactions considered are identical among clinics, the way the chosen algorithm handles these interactions can vary immensely. The goal of this study was to provide a comparison between two commonly used treatment planning systems (Pinnacle and Eclipse) and their associated dose calculation algorithms. In order to this, heterogeneity correction models were evaluated via test plans, and the effects of going from heterogeneity uncorrected patient representation to a heterogeneity correction representation were studied. The results of this study indicate that the actual dose delivered to the patient varies greatly between treatment planning algorithms in areas of low density tissue such as in the lungs. Although treatment planning algorithms are attempting to come to the same result with heterogeneity corrections, the reality is that the results depend strongly on the algorithm used in the situations studied. While the Anisotropic Analytic Method

  15. Some correct error-driven versions of the Constraint Demotion algorithm

    Boersma, P.

    2009-01-01

    This article shows that Error-Driven Constraint Demotion (EDCD), an error-driven learning algorithm proposed by Tesar (1995) for Prince and Smolensky’s (1993/2004) version of Optimality Theory, can fail to converge to a correct totally ranked hierarchy of constraints, unlike the earlier non-error-driven learning algorithms proposed by Tesar and Smolensky (1993). The cause of the problem is found in Tesar’s use of "mark-pooling ties," indicating that EDCD can be repaired by assuming Anttila’s ...

  16. Respiratory motion correction with an improved demons algorithm for PET images

    Respiratory motion is a major factor that affects the quality of PET images of the thoracic area. The diaphragm moves about 15-20 mm due to respiratory motion, which substantially degrades the effective spatial resolution of PET. In this paper, a gated acquisition method is used to correct the motion effects. In this method, an improved demons algorithm is proposed to align the gated images. The experimental results show that the quality of PET images is significantly improved when using our improved method and the proposed method has a faster convergence rate than the original demons algorithm. (authors)

  17. Pulse filtering and correction for CZT detectors using simple digital algorithms based on the wavelet transform

    The authors report an approach to double gaussian filtering used in classical works as dual parameter pulse processing. This technique has been implemented by creating a bank of gaussian-like digital filters based on wavelet transforms. A simple method to correct for the charge loss inherent to room temperature semiconductor gamma detectors has been developed. This method is based on multi-resolution signal analysis. Results are reported from tests of these algorithms on commercial CZT detectors and two trapped hole charge correction levels are compared. Finally, the advantages and limitations of this new approach to detector pulse processing are discussed

  18. Atomic-resolution studies of In2O3-ZnO compounds on aberration-corrected electron microscopes

    In this work, the characteristic inversion domain microstructures of In2O3(ZnO)m (m=30) compounds were investigated by TEM methods. At bright-atom contrast condition, atomically resolved HR-TEM images of In2O3(ZnO)30 were successfully acquired in [1 anti 100] zone axis of ZnO, with projected metal columns of ∝1.6 A well resolved. From contrast maxima in the TEM images, local lattice distortions at the pyramidal inversion domain boundaries were observed for the first time. Lattice displacements and the strain field in two-dimensions were visualized and measured using the 'DALI' algorithm. Atomically resolved single shot and focal series images of In2O3(ZnO)30 were achieved in both zone axes of ZnO, [1 anti 100] and [2 anti 1 anti 10], respectively. The electron waves at the exit-plane were successfully reconstructed using the software package 'TrueImage'. Finally, a three dimensional atomic structure model for the pyramidal IDB was proposed, with an In distribution of 10%, 20%, 40%, 20% and 10% of In contents over 5 atom columns along basal planes, respectively. Through a detailed structural study of In2O3(ZnO)m compounds by using phase-contrast and Z-contrast imaging at atomic resolution, In3+ atoms are determined with trigonal bi-pyramidal co-ordination and are distributed at the pyramidal IDBs. (orig.)

  19. Aberration correction in double-pass amplifiers through the use of phase-conjugate mirrors and/or adaptive optics

    Jackel, Steven M.; Moshe, Inon; Lavi, Raphael

    2001-04-01

    Corrrection of birefringence induced effects (depolarization and bipolar focusing) was achieved in double-pass amplifiers using a Faraday rotator placed between the laser rod and the retroreflecting optic. A necessary condition was that each ray in the beam retraced its path through the amplifying medium. Retrace was limited by imperfect conjugate-beam fidelity and by nonreciprocal double-pass indices of refraction. We compare various retroreflectors: stimulated Brillouin scatter phase-conjugate-mirrors (PCMs), PCMs with relay lenses to image the rod principal plane onto the PCM entrance aperture (IPCMs), IPCMs with external, adaptively-adjusted, astigmatism-correcting cylindrical doublets, and all adaptive optics imaging variable-radius-mirrors (IVRMs). Results with flashlamp pumped, Nd:Cr:GSGG double-pass amplifiers show that average output power increased fivefold with a Faraday rotator plus complete nonlinear optics retroreflector package (IPCM+cylindrical zoom), and that this represents an 80% increase over the power achieved using just a PCM. Far better results are, however, achieved with an IVRM.

  20. OCR Post-Processing Error Correction Algorithm using Google Online Spelling Suggestion

    Bassil, Youssef

    2012-01-01

    With the advent of digital optical scanners, a lot of paper-based books, textbooks, magazines, articles, and documents are being transformed into an electronic version that can be manipulated by a computer. For this purpose, OCR, short for Optical Character Recognition was developed to translate scanned graphical text into editable computer text. Unfortunately, OCR is still imperfect as it occasionally mis-recognizes letters and falsely identifies scanned text, leading to misspellings and linguistics errors in the OCR output text. This paper proposes a post-processing context-based error correction algorithm for detecting and correcting OCR non-word and real-word errors. The proposed algorithm is based on Google's online spelling suggestion which harnesses an internal database containing a huge collection of terms and word sequences gathered from all over the web, convenient to suggest possible replacements for words that have been misspelled during the OCR process. Experiments carried out revealed a signific...

  1. Performance evaluation of operational atmospheric correction algorithms over the East China Seas

    He, Shuangyan; He, Mingxia; Fischer, Jürgen

    2016-04-01

    To acquire high-quality operational data products for Chinese in-orbit and scheduled ocean color sensors, the performances of two operational atmospheric correction (AC) algorithms (ESA MEGS 7.4.1 and NASA SeaDAS 6.1) were evaluated over the East China Seas (ECS) using MERIS data. The spectral remote sensing reflectance R rs(λ), aerosol optical thickness (AOT), and Ångström exponent (α) retrieved using the two algorithms were validated using in situ measurements obtained between May 2002 and October 2009. Match-ups of R rs, AOT, and α between the in situ and MERIS data were obtained through strict exclusion criteria. Statistical analysis of R rs(λ) showed a mean percentage difference (MPD) of 9%-13% in the 490-560 nm spectral range, and significant overestimation was observed at 413 nm (MPD>72%). The AOTs were overestimated (MPD>32%), and although the ESA algorithm outperformed the NASA algorithm in the blue-green bands, the situation was reversed in the red-near-infrared bands. The value of α was obviously underestimated by the ESA algorithm (MPD=41%) but not by the NASA algorithm (MPD=35%). To clarify why the NASA algorithm performed better in the retrieval of α, scatter plots of the α single scattering albedo (SSA) density were prepared. These α-SSA density scatter plots showed that the applicability of the aerosol models used by the NASA algorithm over the ECS is better than that used by the ESA algorithm, although neither aerosol model is suitable for the ECS region. The results of this study provide a reference to both data users and data agencies regarding the use of operational data products and the investigation into the improvement of current AC schemes over the ECS.

  2. Evaluation of two Vaisala RS92 radiosonde solar radiative dry bias correction algorithms

    Dzambo, Andrew M.; Turner, David D.; Mlawer, Eli J.

    2016-01-01

    Solar heating of the relative humidity (RH) probe on Vaisala RS92 radiosondes results in a large dry bias in the upper troposphere. Two different algorithms (Miloshevich et al., 2009, MILO hereafter; and Wang et al., 2013, WANG hereafter) have been designed to account for this solar radiative dry bias (SRDB). These corrections are markedly different with MILO adding up to 40 % more moisture to the original radiosonde profile than WANG; however, the impact of the two algo...

  3. Evaluation of two Vaisala RS92 radiosonde solar radiative dry bias correction algorithms

    A. M. Dzambo; D. D. Turner; E. J. Mlawer

    2015-01-01

    Solar heating of the relative humidity (RH) probe on Vaisala RS92 radiosondes results in a large dry bias in the upper troposphere. Two different algorithms (Miloshevich et al., 2009, MILO hereafter; and Wang et al., 2013, WANG hereafter) have been designed to account for this solar radiative dry bias (SRDB). These corrections are markedly different with MILO adding up to 40 % more moisture to the original radiosonde profile than WANG; however, the impact of the two algori...

  4. SKIP TRIE MATCHING: A GREEDY ALGORITHM FOR REAL-TIME OCR ERROR CORRECTION ON SMARTPHONES

    Vladimir Kulyukin

    2014-03-01

    Full Text Available Proactive nutrition management is considered by many nutritionists and dieticians as a key factor in reducing diabetes, cancer, and other illnesses caused by mismanaged diets. As more individuals manage their daily activities with smartphones, they start using their smartphones as diet management tools. Unfortunately, while there are many visionbased mobile applications to process barcodes, especially aligned ones, there is a relative dearth of vision-based applications for extracting useful nutrition information items such as nutrition facts, caloric contents, and ingredients. In this article, we present a greedy algorithm, called Skip Trie Matching (STM, for real time optical character recognition (OCR output error correction on smartphones. The STM algorithm uses a dictionary of strings stored in a trie data structure to correct OCR errors by skipping misrecognized characters while driving down several paths in the trie. The number of skipped characters is referred to as the skip distance. The algorithm’s worst-case performance is n , where n is the length of the input string to spellcheck. The algorithm’s performance is compared with Apache Lucene’s spell checker [1], a state of the art spell checker where spell checking can be done with the n-gram matching [2] or the Levenshtein edit distance (LED [3]. The input data for comparison tests are text strings produced by the Tesserract OCR engine [4] on text image segments of nutrition data automatically extracted by an Android 2.3.6 smartphone application from real-time video streams of grocery product packages. The evaluation results indicate that, while the STM algorithm is greedy in that it does not find all possible corrections of a misspelled word, it gives higher recalls than Lucene’s n-gram matching or LED. The average run time of the STM algorithm is also lower than Lucene’s implementations of both algorithms.

  5. Minimizing light absorption measurement artifacts of the Aethalometer: evaluation of five correction algorithms

    M. Collaud Coen

    2009-07-01

    Full Text Available The aerosol light absorption coefficient is an essential parameter involved in atmospheric radiation budget calculations. The Aethalometer (AE has the great advantage of measuring the aerosol light absorption coefficient at several wavelengths, but the derived absorption coefficients are systematically too high when compared to reference methods. Up to now, four different correction algorithms of the AE absorption coefficients have been proposed by several authors. A new correction scheme based on these previously published methods has been developed, which accounts for the optical properties of the aerosol particles embedded in the filter. All the corrections have been tested on six datasets representing different aerosol types and loadings and include multi-wavelength AE and white-light AE. All the corrections have also been evaluated through comparison with a Multi-Angle Absorption Photometer (MAAP for four datasets lasting between 6 months and five years. The modification of the wavelength dependence by the different corrections is analyzed in detail. The performances and the limits of all AE corrections are determined and recommendations are given.

  6. Minimizing light absorption measurement artifacts of the Aethalometer: evaluation of five correction algorithms

    M. Collaud Coen

    2010-04-01

    Full Text Available The aerosol light absorption coefficient is an essential parameter involved in atmospheric radiation budget calculations. The Aethalometer (AE has the great advantage of measuring the aerosol light absorption coefficient at several wavelengths, but the derived absorption coefficients are systematically too high when compared to reference methods. Up to now, four different correction algorithms of the AE absorption coefficients have been proposed by several authors. A new correction scheme based on these previously published methods has been developed, which accounts for the optical properties of the aerosol particles embedded in the filter. All the corrections have been tested on six datasets representing different aerosol types and loadings and include multi-wavelength AE and white-light AE. All the corrections have also been evaluated through comparison with a Multi-Angle Absorption Photometer (MAAP for four datasets lasting between 6 months and five years. The modification of the wavelength dependence by the different corrections is analyzed in detail. The performances and the limits of all AE corrections are determined and recommendations are given.

  7. Corrected explicit-implicit domain decomposition algorithms for two-dimensional semilinear parabolic equations

    2009-01-01

    Corrected explicit-implicit domain decomposition(CEIDD) algorithms are studied for parallel approximation of semilinear parabolic problems on distributed memory processors. It is natural to divide the spatial domain into some smaller parallel strips and cells using the simplest straightline interface(SI) . By using the Leray-Schauder fixed-point theorem and the discrete energy method,it is shown that the resulting CEIDD-SI algorithm is uniquely solvable,unconditionally stable and convergent. The CEIDD-SI method always suffers from the globalization of data communication when interior boundaries cross into each other inside the domain. To overcome this disadvantage,a composite interface(CI) that consists of straight segments and zigzag fractions is suggested. The corresponding CEIDD-CI algorithm is proven to be solvable,stable and convergent. Numerical experiments are presented to support the theoretical results.

  8. A baseline correction algorithm for Raman spectroscopy by adaptive knots B-spline

    Wang, Xin; Fan, Xian-guang; Xu, Ying-jie; Wang, Xiu-fen; He, Hao; Zuo, Yong

    2015-11-01

    The Raman spectroscopy technique is a powerful and non-invasive technique for molecular fingerprint detection which has been widely used in many areas, such as food safety, drug safety, and environmental testing. But Raman signals can be easily corrupted by a fluorescent background, therefore we presented a baseline correction algorithm to suppress the fluorescent background in this paper. In this algorithm, the background of the Raman signal was suppressed by fitting a curve called a baseline using a cyclic approximation method. Instead of the traditional polynomial fitting, we used the B-spline as the fitting algorithm due to its advantages of low-order and smoothness, which can avoid under-fitting and over-fitting effectively. In addition, we also presented an automatic adaptive knot generation method to replace traditional uniform knots. This algorithm can obtain the desired performance for most Raman spectra with varying baselines without any user input or preprocessing step. In the simulation, three kinds of fluorescent background lines were introduced to test the effectiveness of the proposed method. We showed that two real Raman spectra (parathion-methyl and colza oil) can be detected and their baselines were also corrected by the proposed method.

  9. An Improved Scene-based Nonuniformity Correction Algorithm for Infrared Focal Plane Arrays Using Neural Networks

    SUI Jing; JIN Wei-qi; DONG Li-quan; WANG Xia; GUO Hong

    2006-01-01

    The improved scene-based adaptive nonuniformity correction (NUC) algorithms using a neural network (NNT) approach for infrared image sequences are presented and analyzed. The retina-like neural networks using steepest descent model was the first proposed infrared focal plane arrays (IRFPA) nonuniformity compensation method, which can perform parameter estimation of the sensors over time on a frame by frame basis. To increase the strength and the robustness of the NNT algorithm and to avoid the presence of ghosting artifacts, some optimization techniques, including momentum term,regularization factor and adaptive learning rate, were executed in the parameter learning process. In this paper, the local median filtering result of Xij ( n ) is proposed as an alternative value of desired network output of neuron Xij ( n ), denoted as Tij ( n ), which is the local spatial average of Xij ( n ) in traditional NNT methods. Noticeably, the NUC algorithm is inter-frame adaptive in nature and does not rely on any statistical assumptions on the scene data in the image sequence.Applications of this algorithm to the simulated video sequences and real infrared data taken with PV320 show that the correction results of image sequence are better than that of using original NNT approach, especially for the short-time image sequences (several hundred frames) subjected to the dense impulse noises with a number of dead or saturated pixels.

  10. Correcting encoder interpolation error on the Green Bank Telescope using an iterative model based identification algorithm

    Franke, Timothy; Weadon, Tim; Ford, John; Garcia-Sanz, Mario

    2015-10-01

    Various forms of measurement errors limit telescope tracking performance in practice. A new method for identifying the correcting coefficients for encoder interpolation error is developed. The algorithm corrects the encoder measurement by identifying a harmonic model of the system and using that model to compute the necessary correction parameters. The approach improves upon others by explicitly modeling the unknown dynamics of the structure and controller and by not requiring a separate system identification to be performed. Experience gained from pin-pointing the source of encoder error on the Green Bank Radio Telescope (GBT) is presented. Several tell-tale indicators of encoder error are discussed. Experimental data from the telescope, tested with two different encoders, are presented. Demonstration of the identification methodology on the GBT as well as details of its implementation are discussed. A root mean square tracking error reduction from 0.68 arc seconds to 0.21 arc sec was achieved by changing encoders and was further reduced to 0.10 arc sec with the calibration algorithm. In particular, the ubiquity of this error source is shown and how, by careful correction, it is possible to go beyond the advertised accuracy of an encoder.

  11. Evaluation of stacking faults and associated partial dislocations in AlSb/GaAs (001) interface by aberration-corrected high-resolution transmission electron microscopy

    The stacking faults (SFs) in an AlSb/GaAs (001) interface were investigated using a 300 kV spherical aberration-corrected high-resolution transmission electron microscope (HRTEM). The structure and strain distribution of the single and intersecting (V-shaped) SFs associated with partial dislocations (PDs) were characterized by the [110] HRTEM images and geometric phase analysis, respectively. In the biaxial strain maps εxx and εyy, a SF can be divided into several sections under different strain states (positive or negative strain values). Furthermore, the strain state for the same section of a SF is in contrast to each other in εxx and εyy strain maps. The modification in the strain states was attributed to the variation in the local atomic displacements for the SF in the AlSb film on the GaAs substrate recorded in the lattice image. Finally, the single SF was found to be bounded by two 30° PDs. A pair of 30° PDs near the heteroepitaxial interface reacted to form a Lomer-Cottrell sessile dislocation located at the vertices of V-shaped SFs with opposite screw components. The roles of misfit dislocations, such as the PDs, in strain relaxation were also discussed

  12. Migration of Single Iridium Atoms and Tri-iridium Clusters on MgO Surfaces. Aberration-Corrected STEM Imaging and ab-initio Calculations

    Han, Chang W. [Purdue Univ., West Lafayette, IN (United States); Iddir, Hakim [Argonne National Lab. (ANL), Argonne, IL (United States); Uzun, Alper [Koc Univ., Instanbul (Turkey); Curtiss, Larry A. [Argonne National Lab. (ANL), Argonne, IL (United States); Browning, Nigel D. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Gates, Bruce C. [Univ. of California, Davis, CA (United States); Ortalan, Volkan [Purdue Univ., West Lafayette, IN (United States)

    2015-11-06

    To address the challenge of fast, direct atomic-scale visualization of the diffusion of atoms and clusters on surfaces, we used aberration-corrected scanning transmission electron microscopy (STEM) with high scan speeds (as little as ~0.1 s per frame) to visualize the diffusion of (1) a heavy atom (Ir) on the surface of a support consisting of light atoms, MgO(100), and (2) an Ir3 cluster on MgO(110). Sequential Z-contrast images elucidate the diffusion mechanisms, including the hopping of Ir1 and the rotational migration of Ir3 as two Ir atoms remain anchored to the surface. Density functional theory (DFT) calculations provided estimates of the diffusion energy barriers and binding energies of the iridium species to the surfaces. The results show how the combination of fast-scan STEM and DFT calculations allow real-time visualization and fundamental understanding of surface diffusion phenomena pertaining to supported catalysts and other materials.

  13. Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography.

    Galaz-Montoya, Jesús G; Hecksel, Corey W; Baldwin, Philip R; Wang, Eryu; Weaver, Scott C; Schmid, Michael F; Ludtke, Steven J; Chiu, Wah

    2016-06-01

    Single particle cryo-electron tomography (cryoSPT) extracts features from cryo-electron tomograms, followed by 3D classification, alignment and averaging to generate improved 3D density maps of such features. Robust methods to correct for the contrast transfer function (CTF) of the electron microscope are necessary for cryoSPT to reach its resolution potential. Many factors can make CTF correction for cryoSPT challenging, such as lack of eucentricity of the specimen stage, inherent low dose per image, specimen charging, beam-induced specimen motions, and defocus gradients resulting both from specimen tilting and from unpredictable ice thickness variations. Current CTF correction methods for cryoET make at least one of the following assumptions: that the defocus at the center of the image is the same across the images of a tiltseries, that the particles all lie at the same Z-height in the embedding ice, and/or that the specimen, the cryo-electron microscopy (cryoEM) grid and/or the carbon support are flat. These experimental conditions are not always met. We have developed a CTF correction algorithm for cryoSPT without making any of the aforementioned assumptions. We also introduce speed and accuracy improvements and a higher degree of automation to the subtomogram averaging algorithms available in EMAN2. Using motion-corrected images of isolated virus particles as a benchmark specimen, recorded with a DE20 direct detection camera, we show that our CTF correction and subtomogram alignment routines can yield subtomogram averages close to 4/5 Nyquist frequency of the detector under our experimental conditions. PMID:27016284

  14. A dispersion and pulse width correction algorithm for the pulsed wire method

    Arbelaez, D., E-mail: darbelaez@lbl.gov [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Wilks, T. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); University of California, Berkeley, CA 94720 (United States); Madur, A.; Prestemon, S.; Marks, S.; Schlueter, R. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)

    2013-07-11

    The pulsed wire technique is an attractive option for the measurement of undulators where the measurement access is restricted due to, for example, narrow undulator gaps or cryogenic environments in the case of superconducting undulators. Using the pulsed wire technique, direct measurements of the first and second integrals of the magnetic field can be obtained. However, one of the main limitations of this technique is the error introduced by dispersive wave motion, due to the finite flexural rigidity of the wire. For the measurement of the first integral of the magnetic field, an error is also introduced by the use of a current pulse with finite pulse width. In this paper, a general solution is presented for dispersive wave motion in pulsed wire measurements. A method for the measurement of the dispersive wave speed is presented and demonstrated through experimental examples. An algorithm is derived which corrects the dispersion and finite pulse-width errors in the measurement of first magnetic field integrals and the dispersion error in the measurement of second magnetic field integrals. The effectiveness of the correction algorithms is demonstrated through experimental measurements, and the results are compared with Hall probe measurements on a short undulator. -- Highlights: ► We derive the equations that describe dispersive motion in a pulsed wire magnetic measurement. ► We develop algorithms that can be used to correct measurement errors that are due to dispersive and finite pulse width effects. ► Excellent agreement is found between the corrected pulsed wire results and Hall probe measurements on a short undulator.

  15. Study on fitness functions of genetic algorithm for dynamically correcting nuclide atmospheric diffusion model

    Background: In radioactive nuclides atmospheric diffusion models, the empirical dispersion coefficients were deduced under certain experiment conditions, whose difference with nuclear accident conditions is a source of deviation. A better estimation of the radioactive nuclide's actual dispersion process could be done by correcting dispersion coefficients with observation data, and Genetic Algorithm (GA) is an appropriate method for this correction procedure. Purpose: This study is to analyze the fitness functions' influence on the correction procedure and the forecast ability of diffusion model. Methods: GA, coupled with Lagrange dispersion model, was used in a numerical simulation to compare 4 fitness functions' impact on the correction result. Results: In the numerical simulation, the fitness function with observation deviation taken into consideration stands out when significant deviation exists in the observed data. After performing the correction procedure on the Kincaid experiment data, a significant boost was observed in the diffusion model's forecast ability. Conclusion: As the result shows, in order to improve dispersion models' forecast ability using GA, observation data should be given different weight in the fitness function corresponding to their error. (authors)

  16. Beam-centric algorithm for pretreatment patient position correction in external beam radiation therapy

    Purpose: In current image guided pretreatment patient position adjustment methods, image registration is used to determine alignment parameters. Since most positioning hardware lacks the full six degrees of freedom (DOF), accuracy is compromised. The authors show that such compromises are often unnecessary when one models the planned treatment beams as part of the adjustment calculation process. The authors present a flexible algorithm for determining optimal realizable adjustments for both step-and-shoot and arc delivery methods. Methods: The beam shape model is based on the polygonal intersection of each beam segment with the plane in pretreatment image volume that passes through machine isocenter perpendicular to the central axis of the beam. Under a virtual six-DOF correction, ideal positions of these polygon vertices are computed. The proposed method determines the couch, gantry, and collimator adjustments that minimize the total mismatch of all vertices over all segments with respect to their ideal positions. Using this geometric error metric as a function of the number of available DOF, the user may select the most desirable correction regime. Results: For a simulated treatment plan consisting of three equally weighted coplanar fixed beams, the authors achieve a 7% residual geometric error (with respect to the ideal correction, considered 0% error) by applying gantry rotation as well as translation and isocentric rotation of the couch. For a clinical head-and-neck intensity modulated radiotherapy plan with seven beams and five segments per beam, the corresponding error is 6%. Correction involving only couch translation (typical clinical practice) leads to a much larger 18% mismatch. Clinically significant consequences of more accurate adjustment are apparent in the dose volume histograms of target and critical structures. Conclusions: The algorithm achieves improvements in delivery accuracy using standard delivery hardware without significantly increasing

  17. An infrared image non-uniformity correction algorithm based on pixels' equivalent integral capacitance

    Zhang, Shuanglei; Wang, Tao; Xu, Chun; Chen, Fansheng

    2015-04-01

    In the infrared focal plane array (IRFPA) imaging system, the non-uniformity (NU) of IRFPA directly affects the quality of infrared images. Especially applying in the infrared weak small targets detection and tracking system, the impact of the spatial noise caused by the non-uniformity of IRFPA detector, often more serious than the temporal noise of imaging system. In order to effectively correct the non-uniformity of IRFPA detector, we firstly analyze main factors that cause the non-uniformity of IRFPA detector in imaging. Secondly, according to photoelectric conversion mechanism of IRFPA detector, and the analysis of the process of the target energy accumulation and transfer, we propose a calculation method of pixels' integral capacitance. Then according to the calculation results, we correct the original IR image preliminary. Finally, we validate this non-uniformity correction algorithm by processing IR images collected from actual IRFPA imaging system. Results show that the algorithm can effectively restrain the non-uniformity caused by the differences of the pixels' capacitance.

  18. Pile-up correction by Genetic Algorithm and Artificial Neural Network

    Pile-up distortion is a common problem for high counting rates radiation spectroscopy in many fields such as industrial, nuclear and medical applications. It is possible to reduce pulse pile-up using hardware-based pile-up rejections. However, this phenomenon may not be eliminated completely by this approach and the spectrum distortion caused by pile-up rejection can be increased as well. In addition, inaccurate correction or rejection of pile-up artifacts in applications such as energy dispersive X-ray (EDX) spectrometers can lead to losses of counts, will give poor quantitative results and even false element identification. Therefore, it is highly desirable to use software-based models to predict and correct any recognized pile-up signals in data acquisition systems. The present paper describes two new intelligent approaches for pile-up correction; the Genetic Algorithm (GA) and Artificial Neural Networks (ANNs). The validation and testing results of these new methods have been compared, which shows excellent agreement with the measured data with 60Co source and NaI detector. The Monte Carlo simulation of these new intelligent algorithms also shows their advantages over hardware-based pulse pile-up rejection methods.

  19. Pile-up correction by Genetic Algorithm and Artificial Neural Network

    Kafaee, M. [Faculty of Physics, Amirkabir University of Technology, Tehran (Iran, Islamic Republic of); Saramad, S. [Faculty of Physics, Amirkabir University of Technology, Tehran (Iran, Islamic Republic of)], E-mail: ssaramad@aut.ac.ir

    2009-08-21

    Pile-up distortion is a common problem for high counting rates radiation spectroscopy in many fields such as industrial, nuclear and medical applications. It is possible to reduce pulse pile-up using hardware-based pile-up rejections. However, this phenomenon may not be eliminated completely by this approach and the spectrum distortion caused by pile-up rejection can be increased as well. In addition, inaccurate correction or rejection of pile-up artifacts in applications such as energy dispersive X-ray (EDX) spectrometers can lead to losses of counts, will give poor quantitative results and even false element identification. Therefore, it is highly desirable to use software-based models to predict and correct any recognized pile-up signals in data acquisition systems. The present paper describes two new intelligent approaches for pile-up correction; the Genetic Algorithm (GA) and Artificial Neural Networks (ANNs). The validation and testing results of these new methods have been compared, which shows excellent agreement with the measured data with {sup 60}Co source and NaI detector. The Monte Carlo simulation of these new intelligent algorithms also shows their advantages over hardware-based pulse pile-up rejection methods.

  20. Applications of an AMSR-E RFI Detection and Correction Algorithm in 1-DVAR over Land

    吴莹; 翁富忠

    2014-01-01

    Land retrievals using passive microwave radiometers are sensitive to small fluctuations in land brightness temperatures. As such, the radio-frequency interference (RFI) signals emanating from man-made microwave radiation transmitters can result in large errors in land retrievals. RFI in C-and X-band channels can con-taminate remotely sensed measurements, as experienced with the Advanced Microwave Scanning Radiometer (AMSR-E) and the WindSat sensor. In this work, applications of an RFI detection and correction algorithm in retrieving a comprehensive suite of geophysical parameters from AMSR-E measurements using the one-dimensional variational retrieval (1-DVAR) method are described. The results indicate that the values of retrieved parameters, such as land skin temperature (LST), over these areas contaminated by RFI are much higher than those from the global data assimilation system (GDAS) products. The results also indicate that the differences between new retrievals and GDAS products are decreased evidently through taking into account the RFI correction algorithm. In addition, the convergence metric (χ2) of 1-DVAR is found to be a new method for identifying regions where land retrievals are affected by RFI. For example, in those regions with much stronger RFI, such as Europe and Japan, χ2 of 1-DVAR is so large that convergence cannot be reached and retrieval results may not be reliable or cannot be obtained. Furthermore,χ2 also decreases with the RFI-corrected algorithm for those regions with moderate or weak RFI. The results of RFI detected byχ2 are almost consistent with those identified by the spectral difference method.

  1. A passive synthetic aperture phase correction algorithm for the asymmetric twin-line array sonar

    2007-01-01

    A passive synthetic aperture based on phase correction algorithm for solving the port-starboard discrimination problem in the non-aligned towed twin-line array sonar, is described. This method creates a virtual array through applying the estimated phase correction into one array of twin-line arrays. Because the synthetic virtual array is aligned with the other array in twin-line arrays, the right port-starboard discriminated results can be obtained by array processing based on the new synthetic twin-line array. The effect of proposed method has been shown by simulated and sea-trials results in towed twin-line array sonar. With low extra computational loads, the proposed method is easy to apply to the practice.

  2. Parallel Implementation of Bias Field Correction Fuzzy C-Means Algorithm for Image Segmentation

    Nouredine AITALI

    2016-03-01

    Full Text Available Image segmentation in the medical field is one of the most important phases to diseases diagnosis. The bias field estimation algorithm is the most interesting techniques to correct the in-homogeneity intensity artifact on the image. However, the use of such technique requires a powerful processing and quite expensive for big size as medical images. Hence the idea of parallelism becomes increasingly required. Several researchers have followed this path mainly in the bioinformatics field where they have suggested different algorithms implementations. In this paper, a novel Single Instruction Multiple Data (SIMD architecture for bias field estimation and image segmentation algorithm is proposed. In order to accelerate compute-intensive portions of the sequential implementation, we have implemented this algorithm on three different graphics processing units (GPU cards named GT740m, GTX760 and GTX580 respectively, using Compute Unified Device Architecture (CUDA software programming tool. Numerical obtained results for the computation speed up, allowed us to conclude on the suitable GPU architecture for this kind of applications and closest ones.

  3. Efficient object scatter correction algorithm for third and fourth generation CT scanners

    Ohnesorge, B.; Flohr, T.; Klingenbeck-Regn, K. [Siemens Medical Engineering, Dept. CTC 2, Forchheim (Germany)

    1999-04-01

    X-ray photons which are scattered inside the object slice and reach the detector array increase the detected signal and produce image artifacts as ``cupping`` effects in large objects and dark bands between regions of high attenuation. The artifact amplitudes increase with scanned volume or slice width. Object scatter can be reduced in third generation computed tomography (CT) geometry by collimating the detector elements. However, a correction can still improve image quality. For fourth generation CT geometry, only poor anti-scatter collimation is possible and a numeric correction is necessary. This paper presents a correction algorithm which can be parameterized for third and fourth generation CT geometry. The method requires low computational effort and allows flexible application to different body regions by simple parameter adjustments. The object scatter intensity which is subtracted from the measured signal is calculated with convolution of the weighted and windowed projection data with a spatially invariant ``scatter convolution function``. The scatter convolution function is approximated for the desired scanner geometry from pencil beam simulations and measurements using coherent and incoherent differential scatter cross section data. Several examples of phantom and medical objects scanned with third and fourth generation CT systems are discussed. In third generation scanners, scatter artifacts are effectively corrected. For fourth generation geometry with poor anti-scatter collimation, object scatter artifacts are strongly reduced. (orig.) With 7 figs., 1 tab., 8 refs.

  4. Proposed algorithm to angular radiation incidence correction of fast neutron track dosimeter

    Aiming to improve the dosimetry of workers potentially exposed to neutron radiation in Brazil, the Instituto de Pesquisas Energeticas e Nucleares - IPEN, a governmental Research Center, in association with PRO-RAD, a private Monitoring Service, designed and developed an individual dosimeter for gamma-neutron mixed field monitoring using the techniques of Thermoluminescent Albedo Dosimetry (TLAD) and Solid State Nuclear Track Dosimetry (SSNTD). Neutron doses are preferably estimated according to albedo neutrons dosimeter response. Track detectors are used just to high fast neutron doses confirmation. Thermoluminescent detectors Harshaw TLD-600 and TLD-700 were used to evaluate gamma and intermediate (albedo) neutrons doses. A commercial polycarbonate produced in Brazil, named SS-1, was used as track detector to measure fast neutrons doses. Previous study shown that SS-1 directional (angular) response presents a cosine behavior. Knowing the incidence angle, a correction factor, equal to the inverse of this angle's cosine, must be applied in the dose calculation algorithm. The ratio of fast and albedo neutrons responses could be considered constant as a function of dose, but decreases proportionally with increasing radiation incidence angle. This variation allows estimating the incidence angle and, then, correcting the fast neutrons dose response. An algorithm to directional incidence correction applied to Americium-Beryllium neutron sources and dose range of radiation protection interest (up to 20 mSv) was proposed based on these premises and considering that correction factor will be applied only if the ratio of fast and albedo neutron responses is below its average to normal incidence less 30% (∼ 200 tracks/cm2.nC). (author)

  5. Parallel algorithms of relative radiometric correction for images of TH-1 satellite

    Wang, Xiang; Zhang, Tingtao; Cheng, Jiasheng; Yang, Tao

    2014-05-01

    The first generation of transitive stereo-metric satellites in China, TH-1 Satellite, is able to gain stereo images of three-line-array with resolution of 5 meters, multispectral images of 10 meters, and panchromatic high resolution images of 2 meters. The procedure between level 0 and level 1A of high resolution images is so called relative radiometric correction (RRC for short). The processing algorithm of high resolution images, with large volumes of data, is complicated and time consuming. In order to bring up the processing speed, people in industry commonly apply parallel processing techniques based on CPU or GPU. This article firstly introduces the whole process and each step of the algorithm - that is in application - of RRC for high resolution images in level 0; secondly, the theory and characteristics of MPI (Message Passing Interface) and OpenMP (Open Multi-Processing) parallel programming techniques is briefly described, as well as the superiority for parallel technique in image processing field; thirdly, aiming at each step of the algorithm in application and based on MPI+OpenMP hybrid paradigm, the parallelizability and the strategies of parallelism for three processing steps: Radiometric Correction, Splicing Pieces of TDICCD (Time Delay Integration Charge-Coupled Device) and Gray Level Adjustment among pieces of TDICCD are deeply discussed, and furthermore, deducts the theoretical acceleration rates of each step and the one of whole procedure, according to the processing styles and independence of calculation; for the step Splicing Pieces of TDICCD, two different strategies of parallelism are proposed, which are to be chosen with consideration of hardware capabilities; finally, series of experiments are carried out to verify the parallel algorithms by applying 2-meter panchromatic high resolution images of TH-1 Satellite, and the experimental results are analyzed. Strictly on the basis of former parallel algorithms, the programs in the experiments

  6. Direct cone-beam cardiac reconstruction algorithm with cardiac banding artifact correction

    Multislice helical computed tomography (CT) is a promising noninvasive technique for coronary artery imaging. Various factors can cause inconsistencies in cardiac CT data, which can result in degraded image quality. These inconsistencies may be the result of the patient physiology (e.g., heart rate variations), the nature of the data (e.g., cone-angle), or the reconstruction algorithm itself. An algorithm which provides the best temporal resolution for each slice, for example, often provides suboptimal image quality for the entire volume since the cardiac temporal resolution (TRc) changes from slice to slice. Such variations in TRc can generate strong banding artifacts in multi-planar reconstruction images or three-dimensional images. Discontinuous heart walls and coronary arteries may compromise the accuracy of the diagnosis. A β-blocker is often used to reduce and stabilize patients' heart rate but cannot eliminate the variation. In order to obtain robust and optimal image quality, a software solution that increases the temporal resolution and decreases the effect of heart rate is highly desirable. This paper proposes an ECG-correlated direct cone-beam reconstruction algorithm (TCOT-EGR) with cardiac banding artifact correction (CBC) and disconnected projections redundancy compensation technique (DIRECT). First the theory and analytical model of the cardiac temporal resolution is outlined. Next, the performance of the proposed algorithms is evaluated by using computer simulations as well as patient data. It will be shown that the proposed algorithms enhance the robustness of the image quality against inconsistencies by guaranteeing smooth transition of heart cycles used in reconstruction

  7. A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM

    Today, the resolution in phase-contrast cryo-electron tomography is for a significant part limited by the contrast transfer function (CTF) of the microscope. The CTF is a function of defocus and thus varies spatially as a result of the tilting of the specimen and the finite specimen thickness. Models that include spatial dependencies have not been adopted in daily practice because of their high computational complexity. Here we present an algorithm which reduces the processing time for computing the 'tilted' CTF by more than a factor 100. Our implementation of the full 3D CTF has a processing time on the order of a Radon transform of a full tilt-series. We derive and validate an expression for the damping envelope function describing the loss of resolution due to specimen thickness. Using simulations we quantify the effects of specimen thickness on the accuracy of various forward models. We study the influence of spatially varying CTF correction and subsequent tomographic reconstruction by simulation and present a new approach for space-variant phase-flipping. We show that our CTF correction strategies are successful in increasing the resolution after tomographic reconstruction. -- Highlights: → Different CTF models for tilted and thick specimens are related. → Computation time for tilted CTF reduced more than 100 x by new algorithm. → Loss of resolution due to specimen thickness predicted by analytic expression. → Effect of specimen thickness on resolution is quantified using simulations. → New approach for space-variant phase-flipping which increases resolution.

  8. An improved model of Charge Transfer Inefficiency and correction algorithm for the Hubble Space Telescope

    Massey, Richard; Cordes, Oliver; Marggraf, Ole; Israel, Holger; Miller, Lance; Hall, David; Cropper, Mark; Prod'homme, Thibaut; Niemi, Sami-Matias

    2014-01-01

    Charge-Coupled Device (CCD) detectors, widely used to obtain digital imaging, can be damaged by high energy radiation. Degraded images appear blurred, because of an effect known as Charge Transfer Inefficiency (CTI), which trails bright objects as the image is read out. It is often possible to correct most of the trailing during post-processing, by moving flux back to where it belongs. We compare several popular algorithms for this: quantifying the effect of their physical assumptions and tradeoffs between speed and accuracy. We combine their best elements to construct a more accurate model of damaged CCDs in the Hubble Space Telescope's Advanced Camera for Surveys/Wide Field Channel, and update it using data up to early 2013. Our algorithm now corrects 98% of CTI trailing in science exposures, a substantial improvement over previous work. Further progress will be fundamentally limited by the presence of read noise. Read noise is added after charge transfer so does not get trailed - but it is incorrectly untr...

  9. A simple algorithm for subregional striatal uptake analysis with partial volume correction in dopaminergic PET imaging

    In positron emission tomography (PET) of the dopaminergic system, quantitative measurements of nigrostriatal dopamine function are useful for differential diagnosis. A subregional analysis of striatal uptake enables the diagnostic performance to be more powerful. However, the partial volume effect (PVE) induces an underestimation of the true radioactivity concentration in small structures. This work proposes a simple algorithm for subregional analysis of striatal uptake with partial volume correction (PVC) in dopaminergic PET imaging. The PVC algorithm analyzes the separate striatal subregions and takes into account the PVE based on the recovery coefficient (RC). The RC is defined as the ratio of the PVE-uncorrected to PVE-corrected radioactivity concentration, and is derived from a combination of the traditional volume of interest (VOI) analysis and the large VOI technique. The clinical studies, comprising 11 patients with Parkinson's disease (PD) and 6 healthy subjects, were used to assess the impact of PVC on the quantitative measurements. Simulations on a numerical phantom that mimicked realistic healthy and neurodegenerative situations were used to evaluate the performance of the proposed PVC algorithm. In both the clinical and the simulation studies, the striatal-to-occipital ratio (SOR) values for the entire striatum and its subregions were calculated with and without PVC. In the clinical studies, the SOR values in each structure (caudate, anterior putamen, posterior putamen, putamen, and striatum) were significantly higher by using PVC in contrast to those without. Among the PD patients, the SOR values in each structure and quantitative disease severity ratings were shown to be significantly related only when PVC was used. For the simulation studies, the average absolute percentage error of the SOR estimates before and after PVC were 22.74% and 1.54% in the healthy situation, respectively; those in the neurodegenerative situation were 20.69% and 2

  10. Algorithms for calculating mass-velocity and Darwin relativistic corrections with n-electron explicitly correlated Gaussians with shifted centers.

    Stanke, Monika; Palikot, Ewa; Adamowicz, Ludwik

    2016-05-01

    Algorithms for calculating the leading mass-velocity (MV) and Darwin (D) relativistic corrections are derived for electronic wave functions expanded in terms of n-electron explicitly correlated Gaussian functions with shifted centers and without pre-exponential angular factors. The algorithms are implemented and tested in calculations of MV and D corrections for several points on the ground-state potential energy curves of the H2 and LiH molecules. The algorithms are general and can be applied in calculations of systems with an arbitrary number of electrons. PMID:27155619

  11. A method to incorporate leakage and head scatter corrections into a tomotherapy inverse treatment planning algorithm

    A detailed tomotherapy inverse treatment planning method is described which incorporates leakage and head scatter corrections during each iteration of the optimization process, allowing these effects to be directly accounted for in the optimized dose distribution. It is shown that the conventional inverse planning method for optimizing incident intensity can be extended to include a 'concurrent' leaf sequencing operation from which the leakage and head scatter corrections are determined. The method is demonstrated using the steepest-descent optimization technique with constant step size and a least-squared error objective. The method was implemented using the MATLAB scientific programming environment and its feasibility demonstrated for 2D test cases simulating treatment delivery using a single coplanar rotation. The results indicate that this modification does not significantly affect convergence of the intensity optimization method when exposure times of individual leaves are stratified to a large number of levels (>100) during leaf sequencing. In general, the addition of aperture dependent corrections, especially 'head scatter', reduces incident fluence in local regions of the modulated fan beam, resulting in increased exposure times for individual collimator leaves. These local variations can result in 5% or greater local variation in the optimized dose distribution compared to the uncorrected case. The overall efficiency of the modified intensity optimization algorithm is comparable to that of the original unmodified case. (author)

  12. An Effective System for Acute Spotting Aberration in the Speech of Abnormal Children Via Artificial Neural Network and Genetic Algorithm

    C. R. Bharathi

    2012-01-01

    Full Text Available Problem statement: In real-world environment, speech signal processing plays a vital role among the research communities. A wide range of researches are carried out in this field for denoising, enhancement and more. Besides the other, stress management is important to identify the spot in which the stress has to be made. Approach: In this study, in order to provide proper speech practice for the abnormal person, their speech is analyzed. Initially, the normal and abnormal person’s speech are obtained with the same set of words. As an initial process, the Mel Frequency Cepstrum Coefficients (MFCC is extracted from both words and the Principal Component Analysis (PCA is applied to reduce the dimensionality of the words. From the dimensionality reduced words, the parameters are obtained and then these parameters are utilized to train the ANN which is used to identify the word that is abnormal. After identifying the abnormal word, the acute word is extracted through the thresholding operation and then FFT is computed for the acute word. From this FFT, the parameters are obtained and then these parameters are used in the genetic algorithm for optimization. GA is used to identify the spot in which the speech practice is required for the abnormal person. Results: The proposed system is implemented in the working platform of MATLAB. The performance of the proposed system is tested by generating the dataset for the normal and abnormal female children. Conclusion: In this study, an effective system has been proposed to identify the abnormal word and the spot in which the speech has to be improved also identified.

  13. Correction.

    2015-11-01

    In the article by Heuslein et al, which published online ahead of print on September 3, 2015 (DOI: 10.1161/ATVBAHA.115.305775), a correction was needed. Brett R. Blackman was added as the penultimate author of the article. The article has been corrected for publication in the November 2015 issue. PMID:26490278

  14. Active Optical Control of Quasi-Static Aberrations for ATST

    Johnson, L. C.; Upton, R.; Rimmele, T. R.; Hubbard, R.; Barden, S. C.

    2012-12-01

    The Advanced Technology Solar Telescope (ATST) requires active control of quasi-static telescope aberrations in order to achieve the image quality set by its science requirements. Four active mirrors will be used to compensate for optical misalignments induced by changing gravitational forces and thermal gradients. These misalignments manifest themselves primarily as low-order wavefront aberrations that will be measured by a Shack-Hartmann wavefront sensor. When operating in closed-loop with the wavefront sensor, the active optics control algorithm uses a linear least-squares reconstructor incorporating force constraints to limit force applied to the primary mirror while also incorporating a neutral-point constraint on the secondary mirror to limit pointing errors. The resulting system compensates for astigmatism and defocus with rigid-body motion of the secondary mirror and higher-order aberrations with primary mirror bending modes. We demonstrate this reconstruction method and present simulation results that apply the active optics correction to aberrations generated by finite-element modeling of thermal and gravitational effects over a typical day of ATST operation. Quasi-static wavefront errors are corrected to within limits set by wavefront sensor noise in all cases with very little force applied to the primary mirror surface and minimal pointing correction needed.

  15. Recursive algorithms for bias and gain nonuniformity correction in infrared videos.

    Pipa, Daniel R; da Silva, Eduardo A B; Pagliari, Carla L; Diniz, Paulo S R

    2012-12-01

    Infrared focal-plane array (IRFPA) detectors suffer from fixed-pattern noise (FPN) that degrades image quality, which is also known as spatial nonuniformity. FPN is still a serious problem, despite recent advances in IRFPA technology. This paper proposes new scene-based correction algorithms for continuous compensation of bias and gain nonuniformity in FPA sensors. The proposed schemes use recursive least-square and affine projection techniques that jointly compensate for both the bias and gain of each image pixel, presenting rapid convergence and robustness to noise. The synthetic and real IRFPA videos experimentally show that the proposed solutions are competitive with the state-of-the-art in FPN reduction, by presenting recovered images with higher fidelity. PMID:22997263

  16. Model-based correction algorithms improving the accuracy of hydrostatic level measurement on pressure vessels

    It is important to possess precise process information for an optimised valuation of the plant process conditions. Especially these information have a great priority as well as for the emergency operation and post accident management. The rapid and great transitions resulting from that are hardly to master by the used measuring devices. Spurious indications can occur the cause of which could be a modification of design conditions, specific transients of process and the damage of the measuring instrument itself respectively during accidents. Further more it would be desirable to get additional not measurable state variables in this situation. For solving those problems modern methods and procedures of process identification, parameter identification and plausibility analysis comprising correction algorithms become more and more important. These modern methods are used to solve the following problems - diagnosis of the process state on the basis of combination by measuring variables, analytical redundancy and linguistic declarations, - reconstruction of not directly measurable variables and parameters respectively - detection and identification of process faults and instrumentation faults (diagnosis) - reconfiguration of measuring signals (correction). The reconstruction of process state is thus a combination of measured quantity, reconstructed state variables and analytical redundancy using model-based measuring methods. The use of model based measuring methods has been investigated on the example of hydrostatic level measurement on horizontal steam generators. The results of experiments on pilot plants as well as comparison with calculations of empowered programs for instants ATHLET and methods of parameter identification serve as a verification of methods and algorithms, which were developed. This paper describe the main facts of this work

  17. A novel image-based motion correction algorithm on ultrasonic image

    Wang, Xuan; Li, Yaqin; Li, Shigao

    2015-12-01

    Lung respiratory movement can cause errors in the operation of image navigation surgery and they are the main errors in the navigation system. To solve this problem, the image-based motion correction strategy should be proposed to quickly correct the respiratory motion in the image sequence. So, the commercial ultrasound machine can display contrast and tissue images simultaneously. In the paper, a convenient, simple and easy-to-use breathing model whose precision was close to the sub-voxel was proposed. The first, in the clinical case the low gray-level variation in the tissue images, motion parameters were first calculated according to the actual lung movement information of each point the tissue images are registered by using template matching with sum of absolute differences metric. Finally, the similar images are selected by a double-selection method which requires global and local threshold setting. The generic breathing model was constructed based on all the sample data. The results of experiments show the algorithm can reduce the original errors caused by breath movement heavily.

  18. An algorithmic strategy for selecting a surgical approach in cervical deformity correction.

    Hann, Shannon; Chalouhi, Nohra; Madineni, Ravichandra; Vaccaro, Alexander R; Albert, Todd J; Harrop, James; Heller, Joshua E

    2014-05-01

    Adult degenerative cervical kyphosis is a debilitating disease that often requires complex surgical management. Young spine surgeons, residents, and fellows are often confused as to which surgical approach to choose due to lack of experience, absence of a systematic method of surgical management, and today's plethora of information regarding surgical techniques. Although surgeons may be able to perform anterior, posterior, or combined (360°) approaches to the cervical spine, many struggle to rationally choose an appropriate approach for deformity correction. The authors introduce an algorithm based on morphology and pathology of adult cervical kyphosis to help the surgeon select the appropriate approach when performing cervical deformity surgery. Cervical deformities are categorized into 5 different prevalent morphological types encountered in clinical settings. A surgical approach tailored to each category/type of deformity is then discussed, with a concrete case illustration provided for each. Preoperative assessment of kyphosis, determination of the goal for surgery, and the complications associated with cervical deformity correction are also summarized. This article's goal is to assist with understanding the big picture for surgical management in cervical spinal deformity. PMID:24785487

  19. A Linear Antenna Array Failure Correction with Null Steering using Firefly Algorithm

    Narwant Singh Grewal

    2014-03-01

    Full Text Available The element failure of digital beam forming array antenna systems used in defence equipment increases the side lobe power level which distorts the beam pattern of the antenna array. The problem of array failure correction becomes more complex when null steering conditions are required to be added. In this paper, the problem of linear antenna array failure has been addressed with multiple wide band null steering using firefly algorithm (FA by controlling the amplitude and phase excitation of array elements. A fitness function in the form of template has been formulated to obtain the error between original (pre-failed side lobe pattern and measured side lobe pattern and this error function has been minimized using FA. Numerical example of element failure correction of element failure of array along with multiple nulls is presented to show the capability of this flexible approach.Defence Science Journal, 2014, 64(2, pp. 136-142. DOI: http://dx.doi.org/10.14429/dsj.64.4250

  20. Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters.

    Ganzetti, Marco; Wenderoth, Nicole; Mantini, Dante

    2016-01-01

    Intensity non-uniformity (INU) in magnetic resonance (MR) imaging is a major issue when conducting analyses of brain structural properties. An inaccurate INU correction may result in qualitative and quantitative misinterpretations. Several INU correction methods exist, whose performance largely depend on the specific parameter settings that need to be chosen by the user. Here we addressed the question of how to select the best input parameters for a specific INU correction algorithm. Our investigation was based on the INU correction algorithm implemented in SPM, but this can be in principle extended to any other algorithm requiring the selection of input parameters. We conducted a comprehensive comparison of indirect metrics for the assessment of INU correction performance, namely the coefficient of variation of white matter (CVWM), the coefficient of variation of gray matter (CVGM), and the coefficient of joint variation between white matter and gray matter (CJV). Using simulated MR data, we observed the CJV to be more accurate than CVWM and CVGM, provided that the noise level in the INU-corrected image was controlled by means of spatial smoothing. Based on the CJV, we developed a data-driven approach for selecting INU correction parameters, which could effectively work on actual MR images. To this end, we implemented an enhanced procedure for the definition of white and gray matter masks, based on which the CJV was calculated. Our approach was validated using actual T1-weighted images collected with 1.5 T, 3 T, and 7 T MR scanners. We found that our procedure can reliably assist the selection of valid INU correction algorithm parameters, thereby contributing to an enhanced inhomogeneity correction in MR images. PMID:27014050

  1. Intensity inhomogeneity correction of structural MR images: a data-driven approach to define input algorithm parameters

    Marco eGanzetti

    2016-03-01

    Full Text Available Intensity non-uniformity (INU in magnetic resonance (MR imaging is a major issue when conducting analyses of brain structural properties. An inaccurate INU correction may result in qualitative and quantitative misinterpretations. Several INU correction methods exist, whose performance largely depend on the specific parameter settings that need to be chosen by the user. Here we addressed the question of how to select the best input parameters for a specific INU correction algorithm. Our investigation was based on the INU correction algorithm implemented in SPM, but this can be in principle extended to any other algorithm requiring the selection of input parameters. We conducted a comprehensive comparison of indirect metrics for the assessment of INU correction performance, namely the coefficient of variation of white matter (CV_WM, the coefficient of variation of gray matter (CV_GM, and the coefficient of joint variation between white matter and gray matter (CJV. Using simulated MR data, we observed the CJV to be more accurate than CV_WM and CV_GM, provided that the noise level in the INU-corrected image was controlled by means of spatial smoothing. Based on the CJV, we developed a data-driven approach for selecting INU correction parameters, which could effectively work on actual MR images. To this end, we implemented an enhanced procedure for the definition of white and gray matter masks, based on which the CJV was calculated. Our approach was validated using actual T1-weighted images collected with 1.5 T, 3 T and 7 T MR scanners. We found that our procedure can reliably assist the selection of valid INU correction algorithm parameters, thereby contributing to an enhanced inhomogeneity correction in MR images.

  2. Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters

    Ganzetti, Marco; Wenderoth, Nicole; Mantini, Dante

    2016-01-01

    Intensity non-uniformity (INU) in magnetic resonance (MR) imaging is a major issue when conducting analyses of brain structural properties. An inaccurate INU correction may result in qualitative and quantitative misinterpretations. Several INU correction methods exist, whose performance largely depend on the specific parameter settings that need to be chosen by the user. Here we addressed the question of how to select the best input parameters for a specific INU correction algorithm. Our investigation was based on the INU correction algorithm implemented in SPM, but this can be in principle extended to any other algorithm requiring the selection of input parameters. We conducted a comprehensive comparison of indirect metrics for the assessment of INU correction performance, namely the coefficient of variation of white matter (CVWM), the coefficient of variation of gray matter (CVGM), and the coefficient of joint variation between white matter and gray matter (CJV). Using simulated MR data, we observed the CJV to be more accurate than CVWM and CVGM, provided that the noise level in the INU-corrected image was controlled by means of spatial smoothing. Based on the CJV, we developed a data-driven approach for selecting INU correction parameters, which could effectively work on actual MR images. To this end, we implemented an enhanced procedure for the definition of white and gray matter masks, based on which the CJV was calculated. Our approach was validated using actual T1-weighted images collected with 1.5 T, 3 T, and 7 T MR scanners. We found that our procedure can reliably assist the selection of valid INU correction algorithm parameters, thereby contributing to an enhanced inhomogeneity correction in MR images. PMID:27014050

  3. Correcting the systematic error of the density functional theory calculation: the alternate combination approach of genetic algorithm and neural network

    The alternate combinational approach of genetic algorithm and neural network (AGANN) has been presented to correct the systematic error of the density functional theory (DFT) calculation. It treats the DFT as a black box and models the error through external statistical information. As a demonstration, the AGANN method has been applied in the correction of the lattice energies from the DFT calculation for 72 metal halides and hydrides. Through the AGANN correction, the mean absolute value of the relative errors of the calculated lattice energies to the experimental values decreases from 4.93% to 1.20% in the testing set. For comparison, the neural network approach reduces the mean value to 2.56%. And for the common combinational approach of genetic algorithm and neural network, the value drops to 2.15%. The multiple linear regression method almost has no correction effect here. (condensed matter: structure, thermal and mechanical properties)

  4. Spectrum correction algorithm for detectors in airborne radioactivity monitoring equipment NH-UAV based on a ratio processing method

    Cao, Ye [Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China); Tang, Xiao-Bin, E-mail: tangxiaobin@nuaa.edu.cn [Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China); Jiangsu Key Laboratory of Nuclear Energy Equipment Materials Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China); Wang, Peng; Meng, Jia; Huang, Xi; Wen, Liang-Sheng [Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China); Chen, Da [Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China); Jiangsu Key Laboratory of Nuclear Energy Equipment Materials Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 (China)

    2015-10-11

    The unmanned aerial vehicle (UAV) radiation monitoring method plays an important role in nuclear accidents emergency. In this research, a spectrum correction algorithm about the UAV airborne radioactivity monitoring equipment NH-UAV was studied to measure the radioactive nuclides within a small area in real time and in a fixed place. The simulation spectra of the high-purity germanium (HPGe) detector and the lanthanum bromide (LaBr{sub 3}) detector in the equipment were obtained using the Monte Carlo technique. Spectrum correction coefficients were calculated after performing ratio processing techniques about the net peak areas between the double detectors on the detection spectrum of the LaBr{sub 3} detector according to the accuracy of the detection spectrum of the HPGe detector. The relationship between the spectrum correction coefficient and the size of the source term was also investigated. A good linear relation exists between the spectrum correction coefficient and the corresponding energy (R{sup 2}=0.9765). The maximum relative deviation from the real condition reduced from 1.65 to 0.035. The spectrum correction method was verified as feasible. - Highlights: • An airborne radioactivity monitoring equipment NH-UAV was developed to measure radionuclide after a nuclear accident. • A spectrum correction algorithm was proposed to obtain precise information on the detected radioactivity within a small area. • The spectrum correction method was verified as feasible. • The corresponding spectrum correction coefficients increase first and then stay constant.

  5. Spectrum correction algorithm for detectors in airborne radioactivity monitoring equipment NH-UAV based on a ratio processing method

    The unmanned aerial vehicle (UAV) radiation monitoring method plays an important role in nuclear accidents emergency. In this research, a spectrum correction algorithm about the UAV airborne radioactivity monitoring equipment NH-UAV was studied to measure the radioactive nuclides within a small area in real time and in a fixed place. The simulation spectra of the high-purity germanium (HPGe) detector and the lanthanum bromide (LaBr3) detector in the equipment were obtained using the Monte Carlo technique. Spectrum correction coefficients were calculated after performing ratio processing techniques about the net peak areas between the double detectors on the detection spectrum of the LaBr3 detector according to the accuracy of the detection spectrum of the HPGe detector. The relationship between the spectrum correction coefficient and the size of the source term was also investigated. A good linear relation exists between the spectrum correction coefficient and the corresponding energy (R2=0.9765). The maximum relative deviation from the real condition reduced from 1.65 to 0.035. The spectrum correction method was verified as feasible. - Highlights: • An airborne radioactivity monitoring equipment NH-UAV was developed to measure radionuclide after a nuclear accident. • A spectrum correction algorithm was proposed to obtain precise information on the detected radioactivity within a small area. • The spectrum correction method was verified as feasible. • The corresponding spectrum correction coefficients increase first and then stay constant

  6. A correction algorithm to simultaneously control dual deformable mirrors in a woofer-tweeter adaptive optics system

    Li, Chaohong; Sredar, Nripun; Ivers, Kevin M.; Queener, Hope; Porter, Jason

    2010-01-01

    We present a direct slope-based correction algorithm to simultaneously control two deformable mirrors (DMs) in a woofer-tweeter adaptive optics system. A global response matrix was derived from the response matrices of each deformable mirror and the voltages for both deformable mirrors were calculated simultaneously. This control algorithm was tested and compared with a 2-step sequential control method in five normal human eyes using an adaptive optics scanning laser ophthalmoscope. The mean ...

  7. Full-wave acoustic and thermal modeling of transcranial ultrasound propagation and investigation of skull-induced aberration correction techniques: a feasibility study

    Kyriakou, Adamos; Neufeld, Esra; Werner, Beat; Székely, Gábor; Kuster, Niels

    2015-01-01

    Background Transcranial focused ultrasound (tcFUS) is an attractive noninvasive modality for neurosurgical interventions. The presence of the skull, however, compromises the efficiency of tcFUS therapy, as its heterogeneous nature and acoustic characteristics induce significant distortion of the acoustic energy deposition, focal shifts, and thermal gain decrease. Phased-array transducers allow for partial compensation of skull-induced aberrations by application of precalculated phase and ampl...

  8. Full-wave acoustic and thermal modeling of transcranial ultrasound propagation and investigation of skull-induced aberration correction techniques: a feasibility study

    Kyriakou, Adamos; Neufeld, Esra; Werner, Beat; Székely, Gábor; Kuster, Niels

    2015-01-01

    BACKGROUND Transcranial focused ultrasound (tcFUS) is an attractive noninvasive modality for neurosurgical interventions. The presence of the skull, however, compromises the efficiency of tcFUS therapy, as its heterogeneous nature and acoustic characteristics induce significant distortion of the acoustic energy deposition, focal shifts, and thermal gain decrease. Phased-array transducers allow for partial compensation of skull-induced aberrations by application of precalculated phase and amp...

  9. Optical Aberrations and Wavefront

    Nihat Polat

    2014-08-01

    Full Text Available The deviation of light to create normal retinal image in the optical system is called aberration. Aberrations are divided two subgroup: low-order aberrations (defocus: spherical and cylindrical refractive errors and high-order aberrations (coma, spherical, trefoil, tetrafoil, quadrifoil, pentafoil, secondary astigmatism. Aberrations increase with aging. Spherical aberrations are compensated by positive corneal and negative lenticular spherical aberrations in youth. Total aberrations are elevated by positive corneal and positive lenticular spherical aberrations in elderly. In this study, we aimed to analyze the basic terms regarding optic aberrations which have gained significance recently. (Turk J Ophthalmol 2014; 44: 306-11

  10. Combining real and reciprocal space information for aberration free coherent electron diffractive imaging

    Information from imaging and diffraction planes, or real and reciprocal spaces, of transmission electron microscopes (TEM) can be combined using iterative transformation algorithms to reconstruct the complex wave function, to improve image resolution and to remove residual aberrations in the case of aberration corrected TEM. Here, we describe the experimental and computation techniques needed for combining real and reciprocal space information. We demonstrate these techniques by reconstructing the complex wave function of quantum dots and carbon nanotubes beyond the microscope's resolution limit. -- Research Highlights: → An aberration free imaging method is described here for high resolution electron imaging. → The method uses diffraction information to improve the resolution and to remove residual aberrations in electron images. → The phase problem is solved using iterative phase retrieval and oversampling. → Examples are shown for imaging quantum dots and carbon nanotubes.

  11. Enhancement of seminal stains using background correction algorithm with colour filters.

    Lee, Wee Chuen; Khoo, Bee Ee; Abdullah, Ahmad Fahmi Lim

    2016-06-01

    Evidence in crime scenes available in the form of biological stains which cannot be visualized during naked eye examination can be detected by imaging their fluorescence using a combination of excitation lights and suitable filters. These combinations selectively allow the passage of fluorescence light emitted from the targeted stains. However, interference from the fluorescence generated by many of the surface materials bearing the stains often renders it difficult to visualize the stains during forensic photography. This report describes the use of background correction algorithm (BCA) to enhance the visibility of seminal stain, a biological evidence that fluoresces. While earlier reports described the use of narrow band-pass filters for other fluorescing evidences, here, we utilize BCA to enhance images captured using commonly available colour filters, yellow, orange and red. Mean-based contrast adjustment was incorporated into BCA to adjust the background brightness for achieving similarity of images' background appearance, a crucial step for ensuring success while implementing BCA. Experiment results demonstrated the effectiveness of our proposed colour filters' approach using the improved BCA in enhancing the visibility of seminal stains in varying dilutions on selected surfaces. PMID:27061146

  12. Decoupling error for the atmospheric correction in ocean color remote sensing algorithms

    This paper studies the decoupling error associated with the atmospheric correction procedures in the ocean color remote sensing algorithms. The decoupling error is caused by the lack of proper consideration of multiple scattering between the atmospheric and ocean components. In other words, the atmosphere and ocean are not coupled properly. A vector radiative transfer model for the coupled atmosphere and ocean (CAO) system based on the successive order of scattering (SOS) method is used to study the error. The inherent optical properties (IOPs) of the ocean are provided by the most updated bio-optical models. Two wavelengths are used in the study, 412 and 555 nm. For a detector located just above the ocean interface, the decoupling errors range from 0.3% to 7% at 412 nm; and from 0.3% to 3% at 555 nm for zenith viewing angles smaller than 70 deg. The decoupling errors are significantly larger for larger zenith viewing angles for this detector. For a detector at the top of the atmosphere (TOA), it is hard to separate the decoupling error from the error introduced by the diffuse transmittance. If we assume the upwelling radiance is uniform just below the ocean surface when estimating the diffuse transmittance, the decoupling errors are from -4% to 8% for zenith viewing angles smaller than 70 deg.; and negative decoupling errors show up at mainly large zenith viewing angles.

  13. Correction.

    2016-02-01

    In the article by Guessous et al (Guessous I, Pruijm M, Ponte B, Ackermann D, Ehret G, Ansermot N, Vuistiner P, Staessen J, Gu Y, Paccaud F, Mohaupt M, Vogt B, Pechère-Bertschi A, Martin PY, Burnier M, Eap CB, Bochud M. Associations of ambulatory blood pressure with urinary caffeine and caffeine metabolite excretions. Hypertension. 2015;65:691–696. doi: 10.1161/HYPERTENSIONAHA.114.04512), which published online ahead of print December 8, 2014, and appeared in the March 2015 issue of the journal, a correction was needed.One of the author surnames was misspelled. Antoinette Pechère-Berstchi has been corrected to read Antoinette Pechère-Bertschi.The authors apologize for this error. PMID:26763012

  14. A GPU-based finite-size pencil beam algorithm with 3D-density correction for radiotherapy dose calculation

    Gu, Xuejun; Jelen, Urszula; Li, Jinsheng; Jia, Xun; Jiang, Steve B.

    2011-06-01

    Targeting at the development of an accurate and efficient dose calculation engine for online adaptive radiotherapy, we have implemented a finite-size pencil beam (FSPB) algorithm with a 3D-density correction method on graphics processing unit (GPU). This new GPU-based dose engine is built on our previously published ultrafast FSPB computational framework (Gu et al 2009 Phys. Med. Biol. 54 6287-97). Dosimetric evaluations against Monte Carlo dose calculations are conducted on ten IMRT treatment plans (five head-and-neck cases and five lung cases). For all cases, there is improvement with the 3D-density correction over the conventional FSPB algorithm and for most cases the improvement is significant. Regarding the efficiency, because of the appropriate arrangement of memory access and the usage of GPU intrinsic functions, the dose calculation for an IMRT plan can be accomplished well within 1 s (except for one case) with this new GPU-based FSPB algorithm. Compared to the previous GPU-based FSPB algorithm without 3D-density correction, this new algorithm, though slightly sacrificing the computational efficiency (~5-15% lower), has significantly improved the dose calculation accuracy, making it more suitable for online IMRT replanning.

  15. A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

    Labaria, George R. [Univ. of California, Santa Cruz, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Warrick, Abbie L. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Celliers, Peter M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Kalantar, Daniel H. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-01-12

    The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

  16. A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

    The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

  17. Deviation from Trajectory Detection in Vision based Robotic Navigation using SURF and Subsequent Restoration by Dynamic Auto Correction Algorithm

    Ray Debraj

    2015-01-01

    Full Text Available Speeded Up Robust Feature (SURF is used to position a robot with respect to an environment and aid in vision-based robotic navigation. During the course of navigation irregularities in the terrain, especially in an outdoor environment may deviate a robot from the track. Another reason for deviation can be unequal speed of the left and right robot wheels. Hence it is essential to detect such deviations and perform corrective operations to bring the robot back to the track. In this paper we propose a novel algorithm that uses image matching using SURF to detect deviation of a robot from the trajectory and subsequent restoration by corrective operations. This algorithm is executed in parallel to positioning and navigation algorithms by distributing tasks among different CPU cores using Open Multi-Processing (OpenMP API.

  18. Quantitative atom column position analysis at the incommensurate interfaces of a (PbS)1.14NbS2 misfit layered compound with aberration-corrected HRTEM

    Aberration-corrected HRTEM is applied to explore the potential of NCSI contrast imaging to quantitatively analyse the complex atomic structure of misfit layered compounds and their incommensurate interfaces. Using the (PbS)1.14NbS2 misfit layered compound as a model system it is shown that atom column position analyses at the incommensurate interfaces can be performed with precisions reaching a statistical accuracy of ±6 pm. The procedure adopted for these studies compares experimental images taken from compound regions free of defects and interface modulations with a structure model derived from XRD experiments and with multi-slice image simulations for the corresponding NCSI contrast conditions used. The high precision achievable in such experiments is confirmed by a detailed quantitative analysis of the atom column positions at the incommensurate interfaces, proving a tetragonal distortion of the monochalcogenide sublattice. -- Research Highlights: → Quantitative aberration-corrected HRTEM analysis of atomic column positions in (PbS)1.14NbS2 misfit layered compound reveals tetragonal distortion of the PbS subsystem. → Detailed comparison of multi-slice simulations with the experimental NCSI contrast condition imaging results lead to a high precision (better than 10 pm) for determining the positions of atoms. → Precision in gaining information of local structure at atomic scale is demonstrated, which may not be accessible by means of X-ray and neutron diffraction analysis.

  19. Research and Implementation of Algorithm for Image Enhancement and Unwrapped Distortion Correction for SLVF Panoramic Night Vision Image

    2008-01-01

    Based on digital signal processor(DSP) and field programmable gate array(FPGA) techniques, the architecture of super large view field(SLVF) panoramic night vision image processing hardware platform was established. The panoramic unwrapping and correcting algorithm, up to a full 360°, based on coordinate rotation digital computer (CORDIC) and night vision image enhancement algorithm, based on histogram equalization theory and edge detection theory, was presented in this paper, with the purpose of processing night vision dynamic panoramic annular image. The annular image can be unwrapped and corrected to conventional rectangular panorama by the panoramic image processing algorithm, which uses the pipelined CORDIC configuration to realize a trigonometric function generator with high speed and high precision. Histogram equalization algorithm can perfectly enhance the contrast of the night vision image. Edge detection algorithm can be propitious to find and detect small dim dynamic targets in night vision circumstances. After abundant experiment, the algorithm for panoramic image processing and night vision image enhancement is successfully implemented in FPGA and DSP. The panoramic night vision image system is a compact device, with no external rotating parts. And the system can reliably and dynamically detect 360° SLVF panoramic night vision image.

  20. New Algorithm for Extracting Motion Information from PROPELLER Data and Head Motion Correction in T1-Weighted MRI.

    Feng, Yanqiu; Chen, Wufan

    2005-01-01

    PROPELLER (Periodically Rotated Overlapping ParallEl Lines with Enhanced Reconstruction) MRI, proposed by J. G. Pipe [1], offers a novel and effective means for compensating motion. For the reconstruction of PROPLLER data, algorithms to reliably and accurately extract inter-strip motion from data in central overlapped area are crucial to motion artifacts suppression. When implemented on T1-weighted MR data, the reconstruction algorithm, with motion estimated by registration based on maximizing correlation energy in frequency domain (CF), produces images with low quality due to the inaccurate estimation of motion. In this paper, a new algorithm is proposed for motion estimation based on the registration by maximizing mutual information in spatial domain (MIS). Furthermore, the optimization process is initialized by CF algorithm, so the algorithm is abbreviated as CF-MIS algorithm in this paper. With phantom and in vivo MR imaging, the CF-MIS algorithm was shown to be of higher accuracy in rotation estimation than CF algorithm. Consequently, the head motion in T1-weighted PROPELLER MRI was better corrected. PMID:17282454

  1. Correction

    2002-01-01

    The photo on the second page of the Bulletin n°48/2002, from 25 November 2002, illustrating the article «Spanish Visit to CERN» was published with a wrong caption. We would like to apologise for this mistake and so publish it again with the correct caption.   The Spanish delegation, accompanied by Spanish scientists at CERN, also visited the LHC superconducting magnet test hall (photo). From left to right: Felix Rodriguez Mateos of CERN LHC Division, Josep Piqué i Camps, Spanish Minister of Science and Technology, César Dopazo, Director-General of CIEMAT (Spanish Research Centre for Energy, Environment and Technology), Juan Antonio Rubio, ETT Division Leader at CERN, Manuel Aguilar-Benitez, Spanish Delegate to Council, Manuel Delfino, IT Division Leader at CERN, and Gonzalo León, Secretary-General of Scientific Policy to the Minister.

  2. Modelling of multi-conjugate adaptive optics for spatially variant aberrations in microscopy

    Adaptive optics has been implemented in a range of high-resolution microscopes in order to overcome the problems of specimen-induced aberrations. Most implementations have used a single aberration correction across the imaged field. It is known, however, that aberrations often vary across the field of view, so a single correction setting cannot compensate all aberrations. Multi-conjugate adaptive optics (MCAO) has been suggested as a possible method for correction of these spatially variant aberrations. MCAO is modelled to simulate the correction of aberrations, both for simple model specimens and using real aberration data from a biological specimen. (special issue article)

  3. Ground based measurements on reflectance towards validating atmospheric correction algorithms on IRS-P6 AWiFS data

    Rani Sharma, Anu; Kharol, Shailesh Kumar; Kvs, Badarinath; Roy, P. S.

    In Earth observation, the atmosphere has a non-negligible influence on the visible and infrared radiation which is strong enough to modify the reflected electromagnetic signal and at-target reflectance. Scattering of solar irradiance by atmospheric molecules and aerosol generates path radiance, which increases the apparent surface reflectance over dark surfaces while absorption by aerosols and other molecules in the atmosphere causes loss of brightness to the scene, as recorded by the satellite sensor. In order to derive precise surface reflectance from satellite image data, it is indispensable to apply the atmospheric correction which serves to remove the effects of molecular and aerosol scattering. In the present study, we have implemented a fast atmospheric correction algorithm to IRS-P6 AWiFS satellite data which can effectively retrieve surface reflectance under different atmospheric and surface conditions. The algorithm is based on MODIS climatology products and simplified use of Second Simulation of Satellite Signal in Solar Spectrum (6S) radiative transfer code, which is used to generate look-up-tables (LUTs). The algorithm requires information on aerosol optical depth for correcting the satellite dataset. The proposed method is simple and easy to implement for estimating surface reflectance from the at sensor recorded signal, on a per pixel basis. The atmospheric correction algorithm has been tested for different IRS-P6 AWiFS False color composites (FCC) covering the ICRISAT Farm, Patancheru, Hyderabad, India under varying atmospheric conditions. Ground measurements of surface reflectance representing different land use/land cover, i.e., Red soil, Chick Pea crop, Groundnut crop and Pigeon Pea crop were conducted to validate the algorithm and found a very good match between surface reflectance and atmospherically corrected reflectance for all spectral bands. Further, we aggregated all datasets together and compared the retrieved AWiFS reflectance with

  4. Guided filter and adaptive learning rate based non-uniformity correction algorithm for infrared focal plane array

    Sheng-Hui, Rong; Hui-Xin, Zhou; Han-Lin, Qin; Rui, Lai; Kun, Qian

    2016-05-01

    Imaging non-uniformity of infrared focal plane array (IRFPA) behaves as fixed-pattern noise superimposed on the image, which affects the imaging quality of infrared system seriously. In scene-based non-uniformity correction methods, the drawbacks of ghosting artifacts and image blurring affect the sensitivity of the IRFPA imaging system seriously and decrease the image quality visibly. This paper proposes an improved neural network non-uniformity correction method with adaptive learning rate. On the one hand, using guided filter, the proposed algorithm decreases the effect of ghosting artifacts. On the other hand, due to the inappropriate learning rate is the main reason of image blurring, the proposed algorithm utilizes an adaptive learning rate with a temporal domain factor to eliminate the effect of image blurring. In short, the proposed algorithm combines the merits of the guided filter and the adaptive learning rate. Several real and simulated infrared image sequences are utilized to verify the performance of the proposed algorithm. The experiment results indicate that the proposed algorithm can not only reduce the non-uniformity with less ghosting artifacts but also overcome the problems of image blurring in static areas.

  5. Evaluation of a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography of scaphoid fixation screws

    Filli, Lukas; Finkenstaedt, Tim; Andreisek, Gustav; Guggenberger, Roman [University Hospital of Zurich, Department of Diagnostic and Interventional Radiology, Zurich (Switzerland); Marcon, Magda [University Hospital of Zurich, Department of Diagnostic and Interventional Radiology, Zurich (Switzerland); University of Udine, Institute of Diagnostic Radiology, Department of Medical and Biological Sciences, Udine (Italy); Scholz, Bernhard [Imaging and Therapy Division, Siemens AG, Healthcare Sector, Forchheim (Germany); Calcagni, Maurizio [University Hospital of Zurich, Division of Plastic Surgery and Hand Surgery, Zurich (Switzerland)

    2014-12-15

    The aim of this study was to evaluate a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography (FDCT) of scaphoid fixation screws. FDCT has gained interest in imaging small anatomic structures of the appendicular skeleton. Angiographic C-arm systems with flat detectors allow fluoroscopy and FDCT imaging in a one-stop procedure emphasizing their role as an ideal intraoperative imaging tool. However, FDCT imaging can be significantly impaired by artefacts induced by fixation screws. Following ethical board approval, commercially available scaphoid fixation screws were inserted into six cadaveric specimens in order to fix artificially induced scaphoid fractures. FDCT images corrected with the algorithm were compared to uncorrected images both quantitatively and qualitatively by two independent radiologists in terms of artefacts, screw contour, fracture line visibility, bone visibility, and soft tissue definition. Normal distribution of variables was evaluated using the Kolmogorov-Smirnov test. In case of normal distribution, quantitative variables were compared using paired Student's t tests. The Wilcoxon signed-rank test was used for quantitative variables without normal distribution and all qualitative variables. A p value of < 0.05 was considered to indicate statistically significant differences. Metal artefacts were significantly reduced by the correction algorithm (p < 0.001), and the fracture line was more clearly defined (p < 0.01). The inter-observer reliability was ''almost perfect'' (intra-class correlation coefficient 0.85, p < 0.001). The prototype correction algorithm in FDCT for metal artefacts induced by scaphoid fixation screws may facilitate intra- and postoperative follow-up imaging. (orig.)

  6. GPU-based finite-size pencil beam algorithm with 3D-density correction for radiotherapy dose calculation

    Gu, Xuejun; Jelen, Urszula; Li, Jinsheng; Jia, Xun; Jiang, Steve B.

    2011-01-01

    Targeting at the development of an accurate and efficient dose calculation engine for online adaptive radiotherapy, we have implemented a finite size pencil beam (FSPB) algorithm with a 3D-density correction method on GPU. This new GPU-based dose engine is built on our previously published ultrafast FSPB computational framework. Dosimetric evaluations against Monte Carlo dose calculations are conducted on 10 IMRT treatment plans (5 head-and-neck cases and 5 lung cases). For all cases, there i...

  7. Evaluation of a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography of scaphoid fixation screws

    The aim of this study was to evaluate a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography (FDCT) of scaphoid fixation screws. FDCT has gained interest in imaging small anatomic structures of the appendicular skeleton. Angiographic C-arm systems with flat detectors allow fluoroscopy and FDCT imaging in a one-stop procedure emphasizing their role as an ideal intraoperative imaging tool. However, FDCT imaging can be significantly impaired by artefacts induced by fixation screws. Following ethical board approval, commercially available scaphoid fixation screws were inserted into six cadaveric specimens in order to fix artificially induced scaphoid fractures. FDCT images corrected with the algorithm were compared to uncorrected images both quantitatively and qualitatively by two independent radiologists in terms of artefacts, screw contour, fracture line visibility, bone visibility, and soft tissue definition. Normal distribution of variables was evaluated using the Kolmogorov-Smirnov test. In case of normal distribution, quantitative variables were compared using paired Student's t tests. The Wilcoxon signed-rank test was used for quantitative variables without normal distribution and all qualitative variables. A p value of < 0.05 was considered to indicate statistically significant differences. Metal artefacts were significantly reduced by the correction algorithm (p < 0.001), and the fracture line was more clearly defined (p < 0.01). The inter-observer reliability was ''almost perfect'' (intra-class correlation coefficient 0.85, p < 0.001). The prototype correction algorithm in FDCT for metal artefacts induced by scaphoid fixation screws may facilitate intra- and postoperative follow-up imaging. (orig.)

  8. High-Speed Atmospheric Correction Algorithm for Spectral Image Processing Project

    National Aeronautics and Space Administration — Generating land and ocean data products from NASA multispectral and hyperspectral imagery missions requires atmospheric correction, the removal of atmospheric...

  9. Evaluation of dose calculation algorithms using the treatment planning system XiO with tissue heterogeneity correction turned on

    Since the cross-section for various radiation interactions is dependent upon tissue material, the presence of heterogeneities affects the final dose delivered. This paper aims to analyze how different treatment planning algorithms (Fast Fourier Transform, Convolution, Superposition, Fast Superposition and Clarkson) work when heterogeneity corrections are used. To that end, a farmer-type ionization chamber was positioned reproducibly (during the time of CT as well as irradiation) inside several phantoms made of aluminum, bone, cork and solid water slabs. The percent difference between the dose measured and calculated by the various algorithms was less than 5%; This is in accordance with the recommendation of several references.The convolution method shows better results for high density materials (difference ∼1 %), whereas the Superposition algorithm is more accurate for low densities (around 1,1%).

  10. Evaluation of dose calculation algorithms using the treatment planning system Xi O with tissue heterogeneity correction turned on

    Since the cross-section for various radiation interactions is dependent upon tissue material, the presence of heterogeneities affects the final dose delivered. This paper aims to analyze how different treatment planning algorithms (Fast Fourier Transform, Convolution, Superposition, Fast Superposition and Clarkson) work when heterogeneity corrections are used. To that end, a farmer-type ionization chamber was positioned reproducibly (during the time of CT as well as irradiation) inside several phantoms made of aluminum, bone, cork and solid water slabs. The percent difference between the dose measured and calculated by the various algorithms was less than 5%.The convolution method shows better results for high density materials (difference ∼1 %), whereas the Superposition algorithm is more accurate for low densities (around 1,1%). (author)

  11. Upper Bounds on the Number of Errors Corrected by the Koetter–Vardy Algorithm

    Justesen, Jørn

    2007-01-01

    By introducing a few simplifying assumptions we derive a simple condition for successful decoding using the Koetter-Vardy algorithm for soft-decision decoding of Reed-Solomon codes. We show that the algorithm has a significant advantage over hard decision decoding when the code rate is low, when...

  12. Evaluation of inhomogeneity correction algorithm in 3DCRT for the purpose of gated treatments

    It has been established that the tumors in chest such as lung and abdomen do move during the course of treatments and it is accurate to treat them with gated imaging and treatment. However, the increased dose per fraction delivered while delivering this kind of treatments with tighter margins make it imperative to verify the inhomogeneity corrections are applied accurately in the treatment planning systems. The purpose of this work is to check the inhomogeneity corrections used or applied in the treatment planning system in terms of phantom measurements and also relate it to other methods of corrections such as ETPR

  13. Stack emission monitoring using non-dispersive infrared spectroscopy with an optimized nonlinear absorption cross interference correction algorithm

    Y. W. Sun

    2013-08-01

    Full Text Available In this paper, we present an optimized analysis algorithm for non-dispersive infrared (NDIR to in situ monitor stack emissions. The proposed algorithm simultaneously compensates for nonlinear absorption and cross interference among different gases. We present a mathematical derivation for the measurement error caused by variations in interference coefficients when nonlinear absorption occurs. The proposed algorithm is derived from a classical one and uses interference functions to quantify cross interference. The interference functions vary proportionally with the nonlinear absorption. Thus, interference coefficients among different gases can be modeled by the interference functions whether gases are characterized by linear or nonlinear absorption. In this study, the simultaneous analysis of two components (CO2 and CO serves as an example for the validation of the proposed algorithm. The interference functions in this case can be obtained by least-squares fitting with third-order polynomials. Experiments show that the results of cross interference correction are improved significantly by utilizing the fitted interference functions when nonlinear absorptions occur. The dynamic measurement ranges of CO2 and CO are improved by about a factor of 1.8 and 3.5, respectively. A commercial analyzer with high accuracy was used to validate the CO and CO2 measurements derived from the NDIR analyzer prototype in which the new algorithm was embedded. The comparison of the two analyzers show that the prototype works well both within the linear and nonlinear ranges.

  14. Transmission-less attenuation correction in time-of-flight PET: analysis of a discrete iterative algorithm

    The maximum likelihood attenuation correction factors (MLACF) algorithm has been developed to calculate the maximum-likelihood estimate of the activity image and the attenuation sinogram in time-of-flight (TOF) positron emission tomography, using only emission data without prior information on the attenuation. We consider the case of a Poisson model of the data, in the absence of scatter or random background. In this case the maximization with respect to the attenuation factors can be achieved in a closed form and the MLACF algorithm works by updating the activity. Despite promising numerical results, the convergence of this algorithm has not been analysed. In this paper we derive the algorithm and demonstrate that the MLACF algorithm monotonically increases the likelihood, is asymptotically regular, and that the limit points of the iteration are stationary points of the likelihood. Because the problem is not convex, however, the limit points might be saddle points or local maxima. To obtain some empirical insight into the latter question, we present data obtained by applying MLACF to 2D simulated TOF data, using a large number of iterations and different initializations. (paper)

  15. Spectrum correction algorithm for detectors in airborne radioactivity monitoring equipment NH-UAV based on a ratio processing method

    Cao, Ye; Tang, Xiao-Bin; Wang, Peng; Meng, Jia; Huang, Xi; Wen, Liang-Sheng; Chen, Da

    2015-10-01

    The unmanned aerial vehicle (UAV) radiation monitoring method plays an important role in nuclear accidents emergency. In this research, a spectrum correction algorithm about the UAV airborne radioactivity monitoring equipment NH-UAV was studied to measure the radioactive nuclides within a small area in real time and in a fixed place. The simulation spectra of the high-purity germanium (HPGe) detector and the lanthanum bromide (LaBr3) detector in the equipment were obtained using the Monte Carlo technique. Spectrum correction coefficients were calculated after performing ratio processing techniques about the net peak areas between the double detectors on the detection spectrum of the LaBr3 detector according to the accuracy of the detection spectrum of the HPGe detector. The relationship between the spectrum correction coefficient and the size of the source term was also investigated. A good linear relation exists between the spectrum correction coefficient and the corresponding energy (R2=0.9765). The maximum relative deviation from the real condition reduced from 1.65 to 0.035. The spectrum correction method was verified as feasible.

  16. Evaluation of Radiometric and Atmospheric Correction Algorithms for Aboveground Forest Biomass Estimation Using Landsat 5 TM Data

    Pablito M. López-Serrano

    2016-04-01

    Full Text Available Solar radiation is affected by absorption and emission phenomena during its downward trajectory from the Sun to the Earth’s surface and during the upward trajectory detected by satellite sensors. This leads to distortion of the ground radiometric properties (reflectance recorded by satellite images, used in this study to estimate aboveground forest biomass (AGB. Atmospherically-corrected remote sensing data can be used to estimate AGB on a global scale and with moderate effort. The objective of this study was to evaluate four atmospheric correction algorithms (for surface reflectance, ATCOR2 (Atmospheric Correction for Flat Terrain, COST (Cosine of the Sun Zenith Angle, FLAASH (Fast Line-of-sight Atmospheric Analysis of Spectral Hypercubes and 6S (Second Simulation of Satellite Signal in the Solar, and one radiometric correction algorithm (for reflectance at the sensor ToA (Apparent Reflectance at the Top of Atmosphere to estimate AGB in temperate forest in the northeast of the state of Durango, Mexico. The AGB was estimated from Landsat 5 TM imagery and ancillary information from a digital elevation model (DEM using the non-parametric multivariate adaptive regression splines (MARS technique. Field reference data for the model training were collected by systematic sampling of 99 permanent forest growth and soil research sites (SPIFyS established during the winter of 2011. The following predictor variables were identified in the MARS model: Band 7, Band 5, slope (β, Wetness Index (WI, NDVI and MSAVI2. After cross-validation, 6S was found to be the optimal model for estimating AGB (R2 = 0.71 and RMSE = 33.5 Mg·ha−1; 37.61% of the average stand biomass. We conclude that atmospheric and radiometric correction of satellite images can be used along with non-parametric techniques to estimate AGB with acceptable accuracy.

  17. A GPU-based finite-size pencil beam algorithm with 3D-density correction for radiotherapy dose calculation

    Gu, Xuejun; Li, Jinsheng; Jia, Xun; Jiang, Steve B

    2011-01-01

    Targeting at developing an accurate and efficient dose calculation engine for online adaptive radiotherapy, we have implemented a finite size pencil beam (FSPB) algorithm with a 3D-density correction method on GPU. This new GPU-based dose engine is built on our previously published ultrafast FSPB computational framework [Gu et al. Phys. Med. Biol. 54 6287-97, 2009]. Dosimetric evaluations against MCSIM Monte Carlo dose calculations are conducted on 10 IMRT treatment plans with heterogeneous treatment regions (5 head-and-neck cases and 5 lung cases). For head and neck cases, when cavities exist near the target, the improvement with the 3D-density correction over the conventional FSPB algorithm is significant. However, when there are high-density dental filling materials in beam paths, the improvement is small and the accuracy of the new algorithm is still unsatisfactory. On the other hand, significant improvement of dose calculation accuracy is observed in all lung cases. Especially when the target is in the m...

  18. Water quality monitoring by thematic mapper in coastal environments. A performance analysis of local biooptical algorithms and atmospheric correction procedures

    Tassan, S. (Commission of the European Communities, Ispra (Italy). Inst. for Remote Sensing Applications); d' Alcala, M.R. (Stazione Zoologica, Napoli (Italy). Biological Oceanography Lab.)

    1993-08-01

    The Thematic Mapper (TM) sensor's ability to monitor localized phenomena associated with anthropogenic pollution in coastal waters has been investigated with reference to experimental data collected on a test site in the Gulf of Naples. In situ measurements yielded the biooptical algorithms for chlorophyll and sediment retrieval as well as an optical model for the computation of the subsurface reflectance as a function of water composition, specific to the site. The algorithms' performance was assessed through a sensitivity analysis, taking into account the correlation among chlorophyll, sediment, and yellow substance contents, as well as the stratification characteristics of the water body. Sensitivity analysis techniques were similarly used to evaluate the performance in the coastal environment of three atmospheric correction models, which assume uniform aerosol load and composition, uniform aerosol composition, and varying aerosol load and composition, respectively. A comparison with sea-truth data collected for the Land-sat overpass of 22 June 1988 showed a satisfactory correspondence between measured concentrations and concentrations retrieved from the TM data using the above atmospheric correction procedures and local biooptical algorithms. Consistent with the indications of the sensitivity analysis, the best agreement was obtained by the atmospheric model assuming varying aerosol load and composition.

  19. Evaluation of Residual Static Corrections by Hybrid Genetic Algorithm Steepest Ascent Autostatics Inversion.Application southern Algerian fields

    Eladj, Said; bansir, fateh; ouadfeul, sid Ali

    2016-04-01

    The application of genetic algorithm starts with an initial population of chromosomes representing a "model space". Chromosome chains are preferentially Reproduced based on Their fitness Compared to the total population. However, a good chromosome has a Greater opportunity to Produce offspring Compared To other chromosomes in the population. The advantage of the combination HGA / SAA is the use of a global search approach on a large population of local maxima to Improve Significantly the performance of the method. To define the parameters of the Hybrid Genetic Algorithm Steepest Ascent Auto Statics (HGA / SAA) job, we Evaluated by testing in the first stage of "Steepest Ascent," the optimal parameters related to the data used. 1- The number of iterations "Number of hill climbing iteration" is equal to 40 iterations. This parameter defines the participation of the algorithm "SA", in this hybrid approach. 2- The minimum eigenvalue for SA '= 0.8. This is linked to the quality of data and S / N ratio. To find an implementation performance of hybrid genetic algorithms in the inversion for estimating of the residual static corrections, tests Were Performed to determine the number of generation of HGA / SAA. Using the values of residual static corrections already calculated by the Approaches "SAA and CSAA" learning has Proved very effective in the building of the cross-correlation table. To determine the optimal number of generation, we Conducted a series of tests ranging from [10 to 200] generations. The application on real seismic data in southern Algeria allowed us to judge the performance and capacity of the inversion with this hybrid method "HGA / SAA". This experience Clarified the influence of the corrections quality estimated from "SAA / CSAA" and the optimum number of generation hybrid genetic algorithm "HGA" required to have a satisfactory performance. Twenty (20) generations Were enough to Improve continuity and resolution of seismic horizons. This Will allow

  20. HEAVY ION FUSION SCIENCE VIRTUAL NATIONAL LABORATORY 1ST QUARTER 2010 MILESTONE REPORT: Simulations of fast correction of chromatic aberrations to establish physics specifications for implementation on NDCX-1 and NDCX-2

    This milestone has been accomplished. The Heavy Ion Fusion Science Virtual National Laboratory has completed simulations of a fast correction scheme to compensate for chromatic and time-dependent defocusing effects in the transport of ion beams to the target plane in the NDCX-1 facility. Physics specifications for implementation in NDCX-1 and NDCX-2 have been established. This milestone has been accomplished. The Heavy Ion Fusion Science Virtual National Laboratory has completed simulations of a fast correction scheme to compensate for chromatic and time-dependent defocusing effects in the transport of ion beams to the target plane in the NDCX-1 facility. Physics specifications for implementation in NDCX-1 and NDCX-2 have been established. Focal spot differences at the target plane between the compressed and uncompressed regions of the beam pulse have been modeled and measured on NDCX-1. Time-dependent focusing and energy sweep from the induction bunching module are seen to increase the compressed pulse spot size at the target plane by factors of two or more, with corresponding scaled reduction in the peak intensity and fluence on target. A time-varying beam envelope correction lens has been suggested to remove the time-varying aberration. An Einzel (axisymmetric electric) lens system has been analyzed and optimized for general transport lines, and as a candidate correction element for NDCX-1. Attainable high-voltage holdoff and temporal variations of the lens driving waveform are seen to effect significant changes on the beam envelope angle over the duration of interest, thus confirming the utility of such an element on NDCX-1. Modeling of the beam dynamics in NDCX-1 was performed using a time-dependent (slice) envelope code and with the 3-D, self-consistent, particle-in-cell code WARP. Proof of concept was established with the slice envelope model such that the spread in beam waist positions relative to the target plane can be minimized with a carefully designed

  1. A corrected and generalized successive random additions algorithm for simulating fractional levy motions

    Liu, Hui-Hai; Bodvarsson, Gudmundur S.; Lu, Silong; Molz, Fred J.

    2002-05-29

    Simulation of subsurface heterogeneity is important for modeling subsurface flow and transport processes. Previous studies have indicated that subsurface property variations can often be characterized by fractional Brownian motion (fBm) or (truncated) fractional Levy motion (fLm). Because Levy-stable distributions have many novel and often unfamiliar properties, studies on generating fLm distributions are rare in the literature. In this study, we generalize a relatively simple and computationally efficient successive random additions (SRA) algorithm, originally developed for generating Gaussian fractals, to simulate fLm distributions. We also propose an additional important step in response to continued observations that the traditional SRA algorithm often generates fractal distributions having poor scaling and correlation properties. Finally, the generalized and modified SRA algorithm is validated through numerical tests.

  2. Probably approximately correct nature's algorithms for learning and prospering in a complex world

    Valiant, Leslie

    2013-01-01

    We have effective theories for very few things. Gravity is one, electromagnetism another. But for most things-whether as mundane as finding a mate or as major as managing an economy-our theories are lousy or nonexistent. Fortunately, we don't need them, any more than a fish needs a theory of water to swim; we're able to muddle through. But how do we do it? In Probably Approximately Correct, computer scientist Leslie Valiant presents a theory of the theoryless. The key is "probably approximately correct" learning, Valiant's model of how anything can act without needing to understand

  3. A Label Correcting Algorithm for Partial Disassembly Sequences in the Production Planning for End-of-Life Products

    Pei-Fang (Jennifer Tsai

    2012-01-01

    Full Text Available Remanufacturing of used products has become a strategic issue for cost-sensitive businesses. Due to the nature of uncertain supply of end-of-life (EoL products, the reverse logistic can only be sustainable with a dynamic production planning for disassembly process. This research investigates the sequencing of disassembly operations as a single-period partial disassembly optimization (SPPDO problem to minimize total disassembly cost. AND/OR graph representation is used to include all disassembly sequences of a returned product. A label correcting algorithm is proposed to find an optimal partial disassembly plan if a specific reusable subpart is retrieved from the original return. Then, a heuristic procedure that utilizes this polynomial-time algorithm is presented to solve the SPPDO problem. Numerical examples are used to demonstrate the effectiveness of this solution procedure.

  4. The Use of Anatomical Information for Molecular Image Reconstruction Algorithms: Attenuation/Scatter Correction, Motion Compensation, and Noise Reduction.

    Chun, Se Young

    2016-03-01

    PET and SPECT are important tools for providing valuable molecular information about patients to clinicians. Advances in nuclear medicine hardware technologies and statistical image reconstruction algorithms enabled significantly improved image quality. Sequentially or simultaneously acquired anatomical images such as CT and MRI from hybrid scanners are also important ingredients for improving the image quality of PET or SPECT further. High-quality anatomical information has been used and investigated for attenuation and scatter corrections, motion compensation, and noise reduction via post-reconstruction filtering and regularization in inverse problems. In this article, we will review works using anatomical information for molecular image reconstruction algorithms for better image quality by describing mathematical models, discussing sources of anatomical information for different cases, and showing some examples. PMID:26941855

  5. A GPU-based finite-size pencil beam algorithm with 3D-density correction for radiotherapy dose calculation

    Gu, Xuejun; Jelen, Urszula; Li, Jinsheng; Jia, Xun; Jiang, Steve B.

    2011-01-01

    Targeting at the development of an accurate and efficient dose calculation engine for online adaptive radiotherapy, we have implemented a finite size pencil beam (FSPB) algorithm with a 3D-density correction method on GPU. This new GPU-based dose engine is built on our previously published ultrafast FSPB computational framework [Gu et al. Phys. Med. Biol. 54 6287-97, 2009]. Dosimetric evaluations against Monte Carlo dose calculations are conducted on 10 IMRT treatment plans (5 head-and-neck c...

  6. A spline-regularized minimal residual algorithm for iterative attenuation correction in SPECT

    In SPECT, regularization is necessary to avoid divergence of the iterative algorithms used for non-uniform attenuation compensation. In this paper, we propose a spline-based regularization method for the minimal residual algorithm. First, the acquisition noise is filtered using a statistical model involving spline smoothing so that the filtered projections belong to a Sobolev space with specific continuity and derivability properties. Then, during the iterative reconstruction procedure, the continuity of the inverse Radon transform between Sobolev spaces is used to design a spline-regularized filtered backprojection method, by which the known regularity properties of the projections determine those of the corresponding reconstructed slices. This ensures that the activity distributions estimated at each iteration present regularity properties, which avoids computational noise amplification, thus stabilizing the iterative process. Analytical and Monte Carlo simulations are used to show that the proposed spline-regularized minimal residual algorithm converges to a satisfactory stable solution in terms of restored activity and homogeneity, using at most 25 iterations, whereas the non regularized version of the algorithm diverges. Choosing the number of iterations is therefore no longer a critical issue for this reconstruction procedure. (author)

  7. Implementation of pressure-correction algorithm with AUSM into openFOAM

    Kožíšek, Martin; Fürst, J.

    Praha : Ústav termomechaniky AV ČR, v. v. i., 2012 - (Jonáš, P.; Uruba, V.), s. 15-16 ISBN 978-80-87012-42-0. [Colloquium FLUID DYNAMICS 2012. Praha (CZ), 24.10.2012-26.10.2012] Institutional support: RVO:61388998 Keywords : pressure correction * AUSM * GAMM * channel Subject RIV: BK - Fluid Dynamics

  8. A new algorithm for detecting and correcting bad pixels in infrared images

    Andrés David Restrepo Girón

    2012-10-01

    Full Text Available An image processing algorithm detects and replaces abnormal pixels individually, highlighting them amongst their neighbours in a sequence of thermal images without affecting overall texture, like classical filtering does. Bad pixels from manufacture or constant use of a CCD device in an IR camera are thus detected and replaced with a very good success rate, thereby reducing the risk of bad interpretation. Some thermal sequences from CFRP plates, taken by a Cincinnati Electronics InSb IR camera, were used for developing and testing this algorithm. The results were compared to a detailed list of bad pixels given by the manufacturer (about 70% coincidence. This work becomes relevant considering that the number of papers on this subject is low; most of them talk about astronomical image pre-processing. Moreover, thermo graphic non-destructive testing (TNDT techniques are gaining popularity in Colombia at introductory levels in industrial sectors such as energy generation and transmission, sugar production and military aeronautics.

  9. Lorentz force correction to the Boltzmann radiation transport equation and its implications for Monte Carlo algorithms

    To establish a theoretical framework for generalizing Monte Carlo transport algorithms by adding external electromagnetic fields to the Boltzmann radiation transport equation in a rigorous and consistent fashion. Using first principles, the Boltzmann radiation transport equation is modified by adding a term describing the variation of the particle distribution due to the Lorentz force. The implications of this new equation are evaluated by investigating the validity of Fano’s theorem. Additionally, Lewis’ approach to multiple scattering theory in infinite homogeneous media is redefined to account for the presence of external electromagnetic fields. The equation is modified and yields a description consistent with the deterministic laws of motion as well as probabilistic methods of solution. The time-independent Boltzmann radiation transport equation is generalized to account for the electromagnetic forces in an additional operator similar to the interaction term. Fano’s and Lewis’ approaches are stated in this new equation. Fano’s theorem is found not to apply in the presence of electromagnetic fields. Lewis’ theory for electron multiple scattering and moments, accounting for the coupling between the Lorentz force and multiple elastic scattering, is found. However, further investigation is required to develop useful algorithms for Monte Carlo and deterministic transport methods. To test the accuracy of Monte Carlo transport algorithms in the presence of electromagnetic fields, the Fano cavity test, as currently defined, cannot be applied. Therefore, new tests must be designed for this specific application. A multiple scattering theory that accurately couples the Lorentz force with elastic scattering could improve Monte Carlo efficiency. The present study proposes a new theoretical framework to develop such algorithms. (paper)

  10. Lorentz force correction to the Boltzmann radiation transport equation and its implications for Monte Carlo algorithms

    Bouchard, Hugo; Bielajew, Alex

    2015-07-01

    To establish a theoretical framework for generalizing Monte Carlo transport algorithms by adding external electromagnetic fields to the Boltzmann radiation transport equation in a rigorous and consistent fashion. Using first principles, the Boltzmann radiation transport equation is modified by adding a term describing the variation of the particle distribution due to the Lorentz force. The implications of this new equation are evaluated by investigating the validity of Fano’s theorem. Additionally, Lewis’ approach to multiple scattering theory in infinite homogeneous media is redefined to account for the presence of external electromagnetic fields. The equation is modified and yields a description consistent with the deterministic laws of motion as well as probabilistic methods of solution. The time-independent Boltzmann radiation transport equation is generalized to account for the electromagnetic forces in an additional operator similar to the interaction term. Fano’s and Lewis’ approaches are stated in this new equation. Fano’s theorem is found not to apply in the presence of electromagnetic fields. Lewis’ theory for electron multiple scattering and moments, accounting for the coupling between the Lorentz force and multiple elastic scattering, is found. However, further investigation is required to develop useful algorithms for Monte Carlo and deterministic transport methods. To test the accuracy of Monte Carlo transport algorithms in the presence of electromagnetic fields, the Fano cavity test, as currently defined, cannot be applied. Therefore, new tests must be designed for this specific application. A multiple scattering theory that accurately couples the Lorentz force with elastic scattering could improve Monte Carlo efficiency. The present study proposes a new theoretical framework to develop such algorithms.

  11. An efficient algorithm for multiphase image segmentation with intensity bias correction.

    Zhang, Haili; Ye, Xiaojing; Chen, Yunmei

    2013-10-01

    This paper presents a variational model for simultaneous multiphase segmentation and intensity bias estimation for images corrupted by strong noise and intensity inhomogeneity. Since the pixel intensities are not reliable samples for region statistics due to the presence of noise and intensity bias, we use local information based on the joint density within image patches to perform image partition. Hence, the pixel intensity has a multiplicative distribution structure. Then, the maximum-a-posteriori (MAP) principle with those pixel density functions generates the model. To tackle the computational problem of the resultant nonsmooth nonconvex minimization, we relax the constraint on the characteristic functions of partition regions, and apply primal-dual alternating gradient projections to construct a very efficient numerical algorithm. We show that all the variables have closed-form solutions in each iteration, and the computation complexity is very low. In particular, the algorithm involves only regular convolutions and pointwise projections onto the unit ball and canonical simplex. Numerical tests on a variety of images demonstrate that the proposed algorithm is robust, stable, and attains significant improvements on accuracy and efficiency over the state-of-the-arts. PMID:23674455

  12. Algorithmic Verification of Forward Correctability%前向可修正属性算术验证的研究

    吴海玲; 周从华; 鞠时光; 王基

    2011-01-01

    目前验证前向可修正属性的"展开方法"是不完备的,即当"展开定理"的局部条件不满足时,不能判断出系统不满足前向可修正属性.为此,提出一种基于状态转换系统的前向可修正属性验证方法,该方法将前向可修正属性的验证归约为可达性问题,进而可借助可达性检测技术完成属性的验证.该方法是完备的,且当属性不成立时,可以给出使属性失效的反例,反例的给出对非法信息流的消除和控制具有直接的帮助.最后,通过磁臂隐通道的例子说明了方法的有效性和实用性.%Due to the incompleteness of the "Unwinding Theorem",a system can't be judged to fail to satisfy the forward correctability, when some local conditions of "Unwinding Theorem" are not satisfied. This paper proposed an algorithmic verification technique to check the forward correctability based on the state transition system The technique reduces forward correctability checking to the reachability problem and the reduction enables us to use the reachability checking technique to perform forward correctability checking. Our method is complete and it can give a counter-exampies to control and eliminate the illegal information flow when a system fails to satisfy the forward correctability. Finally,Disk-arm Convert Channel illustrates the effectiveness and practicality.

  13. Atomic-resolution studies of In{sub 2}O{sub 3}-ZnO compounds on aberration-corrected electron microscopes

    Yu, Wentao

    2009-10-23

    In this work, the characteristic inversion domain microstructures of In{sub 2}O{sub 3}(ZnO){sub m} (m=30) compounds were investigated by TEM methods. At bright-atom contrast condition, atomically resolved HR-TEM images of In{sub 2}O{sub 3}(ZnO){sub 30} were successfully acquired in [1 anti 100] zone axis of ZnO, with projected metal columns of {proportional_to}1.6 A well resolved. From contrast maxima in the TEM images, local lattice distortions at the pyramidal inversion domain boundaries were observed for the first time. Lattice displacements and the strain field in two-dimensions were visualized and measured using the 'DALI' algorithm. Atomically resolved single shot and focal series images of In{sub 2}O{sub 3}(ZnO){sub 30} were achieved in both zone axes of ZnO, [1 anti 100] and [2 anti 1 anti 10], respectively. The electron waves at the exit-plane were successfully reconstructed using the software package 'TrueImage'. Finally, a three dimensional atomic structure model for the pyramidal IDB was proposed, with an In distribution of 10%, 20%, 40%, 20% and 10% of In contents over 5 atom columns along basal planes, respectively. Through a detailed structural study of In{sub 2}O{sub 3}(ZnO){sub m} compounds by using phase-contrast and Z-contrast imaging at atomic resolution, In{sup 3+} atoms are determined with trigonal bi-pyramidal co-ordination and are distributed at the pyramidal IDBs. (orig.)

  14. Nonuniform Illumination Correction Algorithm for Underwater Images Using Maximum Likelihood Estimation Method

    Sonali Sachin Sankpal

    2016-01-01

    Full Text Available Scattering and absorption of light is main reason for limited visibility in water. The suspended particles and dissolved chemical compounds in water are also responsible for scattering and absorption of light in water. The limited visibility in water results in degradation of underwater images. The visibility can be increased by using artificial light source in underwater imaging system. But the artificial light illuminates the scene in a nonuniform fashion. It produces bright spot at the center with the dark region at surroundings. In some cases imaging system itself creates dark region in the image by producing shadow on the objects. The problem of nonuniform illumination is neglected by the researchers in most of the image enhancement techniques of underwater images. Also very few methods are discussed showing the results on color images. This paper suggests a method for nonuniform illumination correction for underwater images. The method assumes that natural underwater images are Rayleigh distributed. This paper used maximum likelihood estimation of scale parameter to map distribution of image to Rayleigh distribution. The method is compared with traditional methods for nonuniform illumination correction using no-reference image quality metrics like average luminance, average information entropy, normalized neighborhood function, average contrast, and comprehensive assessment function.

  15. Broadband Focal Plane Wavefront Control of Amplitude and Phase Aberrations

    Groff, Tyler D; Carlotti, Alexis; Riggs, A J Eldorado

    2012-01-01

    The Stroke Minimization algorithm developed at the Princeton High Contrast Imaging Laboratory has proven symmetric dark hole generation using minimal stroke on two deformable mirrors (DM) in series. The windowed approach to Stroke Minimization has proven symmetric dark holes over small bandwidths by using three wavelengths to define the bandwidth of correction in the optimization problem. We address the relationship of amplitude and phase aberrations with wavelength, how this changes with multiple DMs, and the implications for simultaneously correcting both to achieve symmetric dark holes. Operating Stroke Minimization in the windowed configuration requires multiple wavelength estimates. To save on exposures, a single estimate is extrapolated to bounding wavelengths using the established relationship in wavelength to produce multiple estimates of the image plane electric field. Here we demonstrate better performance by improving this extrapolation of the estimate to other wavelengths. The accuracy of the func...

  16. A Physically Based Algorithm for Non-Blackbody Correction of Cloud-Top Temperature and Application to Convection Study

    Wang, Chunpeng; Lou, Zhengzhao Johnny; Chen, Xiuhong; Zeng, Xiping; Tao, Wei-Kuo; Huang, Xianglei

    2014-01-01

    Cloud-top temperature (CTT) is an important parameter for convective clouds and is usually different from the 11-micrometers brightness temperature due to non-blackbody effects. This paper presents an algorithm for estimating convective CTT by using simultaneous passive [Moderate Resolution Imaging Spectroradiometer (MODIS)] and active [CloudSat 1 Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO)] measurements of clouds to correct for the non-blackbody effect. To do this, a weighting function of the MODIS 11-micrometers band is explicitly calculated by feeding cloud hydrometer profiles from CloudSat and CALIPSO retrievals and temperature and humidity profiles based on ECMWF analyses into a radiation transfer model.Among 16 837 tropical deep convective clouds observed by CloudSat in 2008, the averaged effective emission level (EEL) of the 11-mm channel is located at optical depth; approximately 0.72, with a standard deviation of 0.3. The distance between the EEL and cloud-top height determined by CloudSat is shown to be related to a parameter called cloud-top fuzziness (CTF), defined as the vertical separation between 230 and 10 dBZ of CloudSat radar reflectivity. On the basis of these findings a relationship is then developed between the CTF and the difference between MODIS 11-micrometers brightness temperature and physical CTT, the latter being the non-blackbody correction of CTT. Correction of the non-blackbody effect of CTT is applied to analyze convective cloud-top buoyancy. With this correction, about 70% of the convective cores observed by CloudSat in the height range of 6-10 km have positive buoyancy near cloud top, meaning clouds are still growing vertically, although their final fate cannot be determined by snapshot observations.

  17. Ultra-low dose CT attenuation correction for PET/CT: analysis of sparse view data acquisition and reconstruction algorithms

    For PET/CT systems, PET image reconstruction requires corresponding CT images for anatomical localization and attenuation correction. In the case of PET respiratory gating, multiple gated CT scans can offer phase-matched attenuation and motion correction, at the expense of increased radiation dose. We aim to minimize the dose of the CT scan, while preserving adequate image quality for the purpose of PET attenuation correction by introducing sparse view CT data acquisition.We investigated sparse view CT acquisition protocols resulting in ultra-low dose CT scans designed for PET attenuation correction. We analyzed the tradeoffs between the number of views and the integrated tube current per view for a given dose using CT and PET simulations of a 3D NCAT phantom with lesions inserted into liver and lung. We simulated seven CT acquisition protocols with {984, 328, 123, 41, 24, 12, 8} views per rotation at a gantry speed of 0.35 s. One standard dose and four ultra-low dose levels, namely, 0.35 mAs, 0.175 mAs, 0.0875 mAs, and 0.043 75 mAs, were investigated. Both the analytical Feldkamp, Davis and Kress (FDK) algorithm and the Model Based Iterative Reconstruction (MBIR) algorithm were used for CT image reconstruction. We also evaluated the impact of sinogram interpolation to estimate the missing projection measurements due to sparse view data acquisition. For MBIR, we used a penalized weighted least squares (PWLS) cost function with an approximate total-variation (TV) regularizing penalty function. We compared a tube pulsing mode and a continuous exposure mode for sparse view data acquisition. Global PET ensemble root-mean-squares-error (RMSE) and local ensemble lesion activity error were used as quantitative evaluation metrics for PET image quality.With sparse view sampling, it is possible to greatly reduce the CT scan dose when it is primarily used for PET attenuation correction with little or no measureable effect on the PET image. For the four ultra-low dose levels

  18. Ultra-low dose CT attenuation correction for PET/CT: analysis of sparse view data acquisition and reconstruction algorithms.

    Rui, Xue; Cheng, Lishui; Long, Yong; Fu, Lin; Alessio, Adam M; Asma, Evren; Kinahan, Paul E; De Man, Bruno

    2015-10-01

    For PET/CT systems, PET image reconstruction requires corresponding CT images for anatomical localization and attenuation correction. In the case of PET respiratory gating, multiple gated CT scans can offer phase-matched attenuation and motion correction, at the expense of increased radiation dose. We aim to minimize the dose of the CT scan, while preserving adequate image quality for the purpose of PET attenuation correction by introducing sparse view CT data acquisition.We investigated sparse view CT acquisition protocols resulting in ultra-low dose CT scans designed for PET attenuation correction. We analyzed the tradeoffs between the number of views and the integrated tube current per view for a given dose using CT and PET simulations of a 3D NCAT phantom with lesions inserted into liver and lung. We simulated seven CT acquisition protocols with {984, 328, 123, 41, 24, 12, 8} views per rotation at a gantry speed of 0.35 s. One standard dose and four ultra-low dose levels, namely, 0.35 mAs, 0.175 mAs, 0.0875 mAs, and 0.043 75 mAs, were investigated. Both the analytical Feldkamp, Davis and Kress (FDK) algorithm and the Model Based Iterative Reconstruction (MBIR) algorithm were used for CT image reconstruction. We also evaluated the impact of sinogram interpolation to estimate the missing projection measurements due to sparse view data acquisition. For MBIR, we used a penalized weighted least squares (PWLS) cost function with an approximate total-variation (TV) regularizing penalty function. We compared a tube pulsing mode and a continuous exposure mode for sparse view data acquisition. Global PET ensemble root-mean-squares-error (RMSE) and local ensemble lesion activity error were used as quantitative evaluation metrics for PET image quality.With sparse view sampling, it is possible to greatly reduce the CT scan dose when it is primarily used for PET attenuation correction with little or no measureable effect on the PET image. For the four ultra-low dose levels

  19. Ultra-low dose CT attenuation correction for PET/CT: analysis of sparse view data acquisition and reconstruction algorithms

    Rui, Xue; Cheng, Lishui; Long, Yong; Fu, Lin; Alessio, Adam M.; Asma, Evren; Kinahan, Paul E.; De Man, Bruno

    2015-09-01

    For PET/CT systems, PET image reconstruction requires corresponding CT images for anatomical localization and attenuation correction. In the case of PET respiratory gating, multiple gated CT scans can offer phase-matched attenuation and motion correction, at the expense of increased radiation dose. We aim to minimize the dose of the CT scan, while preserving adequate image quality for the purpose of PET attenuation correction by introducing sparse view CT data acquisition. We investigated sparse view CT acquisition protocols resulting in ultra-low dose CT scans designed for PET attenuation correction. We analyzed the tradeoffs between the number of views and the integrated tube current per view for a given dose using CT and PET simulations of a 3D NCAT phantom with lesions inserted into liver and lung. We simulated seven CT acquisition protocols with {984, 328, 123, 41, 24, 12, 8} views per rotation at a gantry speed of 0.35 s. One standard dose and four ultra-low dose levels, namely, 0.35 mAs, 0.175 mAs, 0.0875 mAs, and 0.043 75 mAs, were investigated. Both the analytical Feldkamp, Davis and Kress (FDK) algorithm and the Model Based Iterative Reconstruction (MBIR) algorithm were used for CT image reconstruction. We also evaluated the impact of sinogram interpolation to estimate the missing projection measurements due to sparse view data acquisition. For MBIR, we used a penalized weighted least squares (PWLS) cost function with an approximate total-variation (TV) regularizing penalty function. We compared a tube pulsing mode and a continuous exposure mode for sparse view data acquisition. Global PET ensemble root-mean-squares-error (RMSE) and local ensemble lesion activity error were used as quantitative evaluation metrics for PET image quality. With sparse view sampling, it is possible to greatly reduce the CT scan dose when it is primarily used for PET attenuation correction with little or no measureable effect on the PET image. For the four ultra-low dose

  20. A study of the dosimetry of small field photon beams used in intensity-modulated radiation therapy in inhomogeneous media: Monte Carlo simulations and algorithm comparisons and corrections

    Jones, Andrew Osler

    There is an increasing interest in the use of inhomogeneity corrections for lung, air, and bone in radiotherapy treatment planning. Traditionally, corrections based on physical density have been used. Modern algorithms use the electron density derived from CT images. Small fields are used in both conformal radiotherapy and IMRT, however their beam characteristics in inhomogeneous media have not been extensively studied. This work compares traditional and modern treatment planning algorithms to Monte Carlo simulations in and near low-density inhomogeneities. Field sizes ranging from 0.5 cm to 5 cm in diameter are projected onto a phantom containing inhomogeneities and depth dose curves are compared. Comparisons of the Dose Perturbation Factors (DPF) are presented as functions of density and field size. Dose Correction Factors (DCF), which scale the algorithms to the Monte Carlo data, are compared for each algorithm. Physical scaling algorithms such as Batho and Equivalent Pathlength (EPL) predict an increase in dose for small fields passing through lung tissue, where Monte Carlo simulations show a sharp dose drop. The physical model-based collapsed cone convolution (CCC) algorithm correctly predicts the dose drop, but does not accurately predict the magnitude. Because the model-based algorithms do not correctly account for the change in backscatter, the dose drop predicted by CCC occurs further downstream compared to that predicted by the Monte Carlo simulations. Beyond the tissue inhomogeneity all of the algorithms studied predict dose distributions in close agreement with Monte Carlo simulations. Dose-volume relationships are important in understanding the effects of radiation to the lung. Dose within the lung is affected by a complex function of beam energy, lung tissue density, and field size. Dose algorithms vary in their abilities to correctly predict the dose to the lung tissue. A thorough analysis of the effects of density, and field size on dose to the lung

  1. Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images

    Zhao, Jianhua; Benlekbir, Samir; Rubinstein, John L

    2015-01-01

    Single particle electron cryomicroscopy (cryo-EM) allows for structures of proteins and protein complexes to be determined from images of non-crystalline specimens. Cryo-EM data analysis requires electron microscope images of randomly oriented ice-embedded protein particles to be rotated and translated to allow for coherent averaging when calculating three-dimensional (3-D) structures. Rotation of 2-D images is usually done with the assumption that the magnification of the electron microscope is the same in all directions, a condition that has been found to be untrue with some electron microscopes when used with the settings necessary for cryo-EM with a direct detector device (DDD) camera (Grant and Grigorieff, in preparation). Correction of images by linear interpolation in real space has allowed high-resolution structures to be calculated from cryo-EM images for symmetric particles (Grant and Grigorieff, in preparation). Here we describe and compare a simple real space method and a somewhat more sophisticat...

  2. Baseflow separation based on a meteorology-corrected nonlinear reservoir algorithm in a typical rainy agricultural watershed

    He, Shengjia; Li, Shuang; Xie, Runting; Lu, Jun

    2016-04-01

    A baseflow separation model called meteorology-corrected nonlinear reservoir algorithm (MNRA) was developed by combining nonlinear reservoir algorithm with a meteorological regression model, in which the effects of meteorological factors on daily baseflow recession were fully expressed. Using MNRA and the monitored data of daily streamflow and meteorological factors (including precipitation, evaporation, wind speed, water vapor pressure and relative humidity) from 2003 to 2012, we determined the daily, monthly, and yearly variations in baseflow from ChangLe River watershed, a typical rainy agricultural watershed in eastern China. Results showed that the estimated annual baseflow of the ChangLe River watershed varied from 18.8 cm (2004) to 61.9 cm (2012) with an average of 35.7 cm, and the baseflow index (the ratio of baseflow to streamflow) varied from 0.58 (2007) to 0.74 (2003) with an average of 0.65. Comparative analysis of different methods showed that the meteorological regression statistical model was a better alternative to the Fourier fitted curve for daily recession parameter estimation. Thus, the reliability and accuracy of the baseflow separation was obviously improved by MNRA, i.e., the Nash-Sutcliffe efficiency increased from 0.90 to 0.98. Compared with the Kalinin's and Eckhardt's recursive digital filter methods, the MNRA approach could usually be more sensitive for baseflow response to precipitation and obtained a higher goodness-of-fit for streamflow recession, especially in the area with high-level shallow groundwater and frequent rain.

  3. Impact of an intra-cycle motion correction algorithm on overall evaluability and diagnostic accuracy of computed tomography coronary angiography

    Pontone, Gianluca; Bertella, Erika; Baggiano, Andrea; Mushtaq, Saima; Loguercio, Monica; Segurini, Chiara; Conte, Edoardo; Beltrama, Virginia; Annoni, Andrea; Formenti, Alberto; Petulla, Maria; Trabattoni, Daniela; Pepi, Mauro [Centro Cardiologico Monzino, IRCCS, Milan (Italy); Andreini, Daniele; Montorsi, Piero; Bartorelli, Antonio L. [Centro Cardiologico Monzino, IRCCS, Milan (Italy); University of Milan, Department of Cardiovascular Sciences and Community Health, Milan (Italy); Guaricci, Andrea I. [University of Foggia, Department of Cardiology, Foggia (Italy)

    2016-01-15

    The aim of this study was to evaluate the impact of a novel intra-cycle motion correction algorithm (MCA) on overall evaluability and diagnostic accuracy of cardiac computed tomography coronary angiography (CCT). From a cohort of 900 consecutive patients referred for CCT for suspected coronary artery disease (CAD), we enrolled 160 (18 %) patients (mean age 65.3 ± 11.7 years, 101 male) with at least one coronary segment classified as non-evaluable for motion artefacts. The CCT data sets were evaluated using a standard reconstruction algorithm (SRA) and MCA and compared in terms of subjective image quality, evaluability and diagnostic accuracy. The mean heart rate during the examination was 68.3 ± 9.4 bpm. The MCA showed a higher Likert score (3.1 ± 0.9 vs. 2.5 ± 1.1, p < 0.001) and evaluability (94%vs.79 %, p < 0.001) than the SRA. In a 45-patient subgroup studied by clinically indicated invasive coronary angiography, specificity, positive predictive value and accuracy were higher in MCA vs. SRA in segment-based and vessel-based models, respectively (87%vs.73 %, 50%vs.34 %, 85%vs.73 %, p < 0.001 and 62%vs.28 %, 66%vs.51 % and 75%vs.57 %, p < 0.001). In a patient-based model, MCA showed higher accuracy vs. SCA (93%vs.76 %, p < 0.05). MCA can significantly improve subjective image quality, overall evaluability and diagnostic accuracy of CCT. (orig.)

  4. SU-E-T-477: An Efficient Dose Correction Algorithm Accounting for Tissue Heterogeneities in LDR Brachytherapy

    Mashouf, S; Lai, P [University of Toronto, Medical Biophysics Dept., Toronto, ON (Canada); Karotki, A; Keller, B; Beachey, D; Pignol, J [Sunnybrook Health Sciences Centre, Toronto, ON (Canada)

    2014-06-01

    Purpose: Seed brachytherapy is currently used for adjuvant radiotherapy of early stage prostate and breast cancer patients. The current standard for calculation of dose surrounding the brachytherapy seeds is based on American Association of Physicist in Medicine Task Group No. 43 (TG-43 formalism) which generates the dose in homogeneous water medium. Recently, AAPM Task Group No. 186 emphasized the importance of accounting for tissue heterogeneities. This can be done using Monte Carlo (MC) methods, but it requires knowing the source structure and tissue atomic composition accurately. In this work we describe an efficient analytical dose inhomogeneity correction algorithm implemented using MIM Symphony treatment planning platform to calculate dose distributions in heterogeneous media. Methods: An Inhomogeneity Correction Factor (ICF) is introduced as the ratio of absorbed dose in tissue to that in water medium. ICF is a function of tissue properties and independent of source structure. The ICF is extracted using CT images and the absorbed dose in tissue can then be calculated by multiplying the dose as calculated by the TG-43 formalism times ICF. To evaluate the methodology, we compared our results with Monte Carlo simulations as well as experiments in phantoms with known density and atomic compositions. Results: The dose distributions obtained through applying ICF to TG-43 protocol agreed very well with those of Monte Carlo simulations as well as experiments in all phantoms. In all cases, the mean relative error was reduced by at least 50% when ICF correction factor was applied to the TG-43 protocol. Conclusion: We have developed a new analytical dose calculation method which enables personalized dose calculations in heterogeneous media. The advantages over stochastic methods are computational efficiency and the ease of integration into clinical setting as detailed source structure and tissue segmentation are not needed. University of Toronto, Natural Sciences and

  5. Environmental TEM in an Aberration Corrected Microscope

    Hansen, Thomas Willum; Wagner, Jakob Birkedal

    ‐resolution imaging. A gaseous atmosphere in the pole‐piece gap of the objective lens of the microscope alters both the incoming electron wave prior to interaction with the sample and the outgoing wave below the sample. Whereas conventional TEM samples are usually thin (below 10‐20 nm), the gas in the environmental...... microscope column. The effects of gas on the electron wave in the objective lens are not well understood and needs further attention. Imaging samples with a simple geometry, such as gold particles on a flat graphene substrate and analyzing the variations in contrast, provides a means for understanding the...... results from imaging in various elemental as well as di‐molecular gases and their effect on imaging and spectroscopy in the environmental transmission electron microscope....

  6. Aberration corrected STEM of iron rhodium nanoislands

    McLaren, M. J.; Hage, F. S.; Loving, M.; Ramasse, Q. M.; Lewis, L. H.; Marrows, C. H.; Brydson, R. M. D.

    2014-06-01

    Iron-rhodium (FeRh) nanoislands of equiatomic composition have been analysed using scanning transmission electron microscopy (STEM) electron energy loss spec-troscopy(EELS) and high angle annular dark field (HAADF) techniques. Previous magne-tometry results have lead to a hypothesis that at room temperature the core of the islands are antiferromagnetic while the shell has a small ferromagnetic signal. The causes of this effect are most likely to be a difference in composition at the edges or a strain on the island that stretches the lattice and forces the ferromagnetic transition. The results find, at the film-substrate interface, an iron-rich layer ~ 5 Å thick that could play a key role in affecting the magnetostructural transition around the interfacial region and account for the room temperature ferromagnetism.

  7. Effect of snapshot freeze motion correction algorithm on image quality of coronary CT angiography without heart rate control

    Objective: To assess the effect of snapshot freeze (SSF) motion correction algorithm on the image quality of coronary CT angiography (CCTA). Methods: Thirty-one consecutive patients underwent coronary CTA without heart rate control. All of the CCTA images were reconstructed by the means of both standard (STD) and SSF motion correction. Image quality and interpretability of STD and SSF reconstructions were compared. CCTA images were interpreted with Likert 4-points score system by two experienced radiologists. The image qualities were assessed on per-artery and per-segment level, and interpretability was performed on per-segment, per-artery, and per-patient levels. Comparisons of variables were performed with paired Wilcoxon rank sum test and paired Chi-square test. Results: SSF reconstructions showed higher interpretability than STD reconstructions on per-patient [100.0% (31/31) vs 64.5% (20/31), χ2=9.09, P=0.002] and per-artery [100.0% (124/124) vs 83.9% (104/124), χ2=18.05, P=0.001] and per-segment level [99.0% (413/417) vs 89.2% (372/417), χ2=35.56, P=0.001]. Image qualities were higher with the use of SSF than STD reconstructions on LAD [3.3 ± 0.7 vs 2.9 ± 1.0, Z=2.70, P=0.007], LCX [3.1 ±0.8 vs 2.5 ± 1.1, Z=3.23, P=0.001] and RCA [3.3 ±0.6 vs 2.1 ± 0.9, Z=4.60, P=0.001], but they were similar on LM [3.9 ± 0.4 vs 3.7 ± 0.6, Z=1.89, P=0.059]. Image quality was higher with the use of SSF versus STD reconstructions on per-segment [3.5 ± 0.7 vs 3.0 ± 1.0, Z=10.31, P=0.001] level. Conclusions: The use of SSF motion correction algorithm improves image quality and interpretability of coronary CTA without heart rate control. (authors)

  8. Sensing Phase Aberrations behind Lyot Coronagraphs

    Sivaramakrishnan, Anand; Soummer, Rémi; Pueyo, Laurent; Wallace, J. Kent; Shao, Michael

    2008-11-01

    Direct detection of young extrasolar planets orbiting nearby stars can be accomplished from the ground with extreme adaptive optics and coronagraphy in the near-infrared, as long as this combination can provide an image with a dynamic range of 107 after the data are processed. Slowly varying speckles due to residual phase aberrations that are not measured by the primary wave-front sensor are the primary obstacle to achieving such a dynamic range. In particular, non-common optical path aberrations occurring between the wave-front sensor and the coronagraphic occulting spot degrade performance the most. We analyze the passage of both low and high spatial frequency phase ripples, as well as low-order Zernike aberrations, through an apodized pupil Lyot coronagraph in order to demonstrate the way coronagraphic filtering affects various aberrations. We derive the coronagraphically induced cutoff frequency of the filtering and estimate coronagraphic contrast losses due to low-order Zernike aberrations: tilt, astigmatism, defocus, coma, and spherical aberration. Such slowly varying path errors can be measured behind a coronagraph and corrected by a slowly updated optical path delay precompensation or offset asserted on the wave front by the adaptive optics (AO) system. We suggest ways of measuring and correcting all but the lowest spatial frequency aberrations using Lyot plane wave-front data, in spite of the complex interaction between the coronagraph and those mid-spatial frequency aberrations that cause image plane speckles near the coronagraphic focal plane mask occulter's edge. This investigation provides guidance for next-generation coronagraphic instruments currently under construction.

  9. Effects of defect pixel correction algorithms for x-ray detectors on image quality in planar projection and volumetric CT data sets

    In this study we compared various defect pixel correction methods for reducing artifact appearance within projection images used for computed tomography (CT) reconstructions.Defect pixel correction algorithms were examined with respect to their artifact behaviour within planar projection images as well as in volumetric CT reconstructions. We investigated four algorithms: nearest neighbour, linear and adaptive linear interpolation, and a frequency-selective spectral-domain approach.To characterise the quality of each algorithm in planar image data, we inserted line defects of varying widths and orientations into images. The structure preservation of each algorithm was analysed by corrupting and correcting the image of a slit phantom pattern and by evaluating its line spread function (LSF). The noise preservation was assessed by interpolating corrupted flat images and estimating the noise power spectrum (NPS) of the interpolated region.For the volumetric investigations, we examined the structure and noise preservation within a structured aluminium foam, a mid-contrast cone-beam phantom and a homogeneous Polyurethane (PUR) cylinder.The frequency-selective algorithm showed the best structure and noise preservation for planar data of the correction methods tested. For volumetric data it still showed the best noise preservation, whereas the structure preservation was outperformed by the linear interpolation.The frequency-selective spectral-domain approach in the correction of line defects is recommended for planar image data, but its abilities within high-contrast volumes are restricted. In that case, the application of a simple linear interpolation might be the better choice to correct line defects within projection images used for CT. (paper)

  10. Effects of defect pixel correction algorithms for x-ray detectors on image quality in planar projection and volumetric CT data sets

    Kuttig, Jan; Steiding, Christian; Hupfer, Martin; Karolczak, Marek; Kolditz, Daniel

    2015-09-01

    In this study we compared various defect pixel correction methods for reducing artifact appearance within projection images used for computed tomography (CT) reconstructions. Defect pixel correction algorithms were examined with respect to their artifact behaviour within planar projection images as well as in volumetric CT reconstructions. We investigated four algorithms: nearest neighbour, linear and adaptive linear interpolation, and a frequency-selective spectral-domain approach. To characterise the quality of each algorithm in planar image data, we inserted line defects of varying widths and orientations into images. The structure preservation of each algorithm was analysed by corrupting and correcting the image of a slit phantom pattern and by evaluating its line spread function (LSF). The noise preservation was assessed by interpolating corrupted flat images and estimating the noise power spectrum (NPS) of the interpolated region. For the volumetric investigations, we examined the structure and noise preservation within a structured aluminium foam, a mid-contrast cone-beam phantom and a homogeneous Polyurethane (PUR) cylinder. The frequency-selective algorithm showed the best structure and noise preservation for planar data of the correction methods tested. For volumetric data it still showed the best noise preservation, whereas the structure preservation was outperformed by the linear interpolation. The frequency-selective spectral-domain approach in the correction of line defects is recommended for planar image data, but its abilities within high-contrast volumes are restricted. In that case, the application of a simple linear interpolation might be the better choice to correct line defects within projection images used for CT.

  11. Advanced Spaceborne Thermal Emission and Reflection Radiometer Level 1 Precision Terrain Corrected Registered At-Sensor Radiance (AST_L1T) Product, algorithm theoretical basis document

    Meyer, David; Siemonsma, Dawn; Brooks, Barbara; Johnson, Lowell

    2015-01-01

    This document provides an overview of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) supplemental algorithms in conjunction with the reuse of Landsat geometric algorithms modified by the National Aeronautics and Space Administration (NASA Land Processes Distributed Active Archive Center (LP DAAC) to create an ASTER Level 1 Precision Terrain Corrected Registered At-Sensor Radiance (AST_L1T) product. Implementation of these algorithms occurs within the AST_L1T product generation executable (PGE) as part of the open source Simple, Scalable, Script-based Science Processor for Missions (S4PM) processing software subsystem. The AST_L1T algorithms include the following: Generation of the AST_L1A input product via supplemental algorithms

  12. Phase correction for a distorted orbital angular momentum beam using a Zernike polynomials-based stochastic-parallel-gradient-descent algorithm.

    Xie, Guodong; Ren, Yongxiong; Huang, Hao; Lavery, Martin P J; Ahmed, Nisar; Yan, Yan; Bao, Changjing; Li, Long; Zhao, Zhe; Cao, Yinwen; Willner, Moshe; Tur, Moshe; Dolinar, Samuel J; Boyd, Robert W; Shapiro, Jeffrey H; Willner, Alan E

    2015-04-01

    A stochastic-parallel-gradient-descent algorithm (SPGD) based on Zernike polynomials is proposed to generate the phase correction pattern for a distorted orbital angular momentum (OAM) beam. The Zernike-polynomial coefficients for the correction pattern are obtained by monitoring the intensity profile of the distorted OAM beam through an iteration-based feedback loop. We implement this scheme and experimentally show that the proposed approach improves the quality of the turbulence-distorted OAM beam. Moreover, we apply phase correction patterns derived from a probe OAM beam through emulated turbulence to correct other OAM beams transmitted through the same turbulence. Our experimental results show that the patterns derived this way simultaneously correct multiple OAM beams propagating through the same turbulence, and the crosstalk among these modes is reduced by more than 5 dB. PMID:25831291

  13. DEFLATE Compression Algorithm Corrects for Overestimation of Phylogenetic Diversity by Grantham Approach to Single-Nucleotide Polymorphism Classification

    Arran Schlosberg

    2014-05-01

    Full Text Available Improvements in speed and cost of genome sequencing are resulting in increasing numbers of novel non-synonymous single nucleotide polymorphisms (nsSNPs in genes known to be associated with disease. The large number of nsSNPs makes laboratory-based classification infeasible and familial co-segregation with disease is not always possible. In-silico methods for classification or triage are thus utilised. A popular tool based on multiple-species sequence alignments (MSAs and work by Grantham, Align-GVGD, has been shown to underestimate deleterious effects, particularly as sequence numbers increase. We utilised the DEFLATE compression algorithm to account for expected variation across a number of species. With the adjusted Grantham measure we derived a means of quantitatively clustering known neutral and deleterious nsSNPs from the same gene; this was then used to assign novel variants to the most appropriate cluster as a means of binary classification. Scaling of clusters allows for inter-gene comparison of variants through a single pathogenicity score. The approach improves upon the classification accuracy of Align-GVGD while correcting for sensitivity to large MSAs. Open-source code and a web server are made available at https://github.com/aschlosberg/CompressGV.

  14. A two-dimensional, finite-element, flux-corrected transport algorithm for the solution of gas discharge problems

    Georghiou, G. E.; Morrow, R.; Metaxas, A. C.

    2000-10-01

    An improved finite-element flux-corrected transport (FE-FCT) scheme, which was demonstrated in one dimension by the authors, is now extended to two dimensions and applied to gas discharge problems. The low-order positive ripple-free scheme, required to produce a FCT algorithm, is obtained by introducing diffusion to the high-order scheme (two-step Taylor-Galerkin). A self-adjusting variable diffusion coefficient is introduced, which reduces the high-order scheme to the equivalent of the upwind difference scheme, but without the complexities of an upwind scheme in a finite-element setting. Results are presented which show that the high-order scheme reduces to the equivalent of upwinding when the new diffusion coefficient is used. The proposed FCT scheme is shown to give similar results in comparison to a finite-difference time-split FCT code developed by Boris and Book. Finally, the new method is applied for the first time to a streamer propagation problem in its two-dimensional form.

  15. Brachytherapy heterogeneity correction algorithm

    Hueso González, Fernando

    2011-01-01

    El objetivo de este trabajo de investigación es el estudio de la influencia de heterogeneidades de los tejidos en la dosimetría de braquiterapia. En concreto, hemos desarrollado un algoritmo que tiene en cuenta las calcificaciones localizadas dentro de la próstata y corrige la dosis de referencia en agua. Este algoritmo está basado en un modelo analítico y es aplicable a Sistemas de Planificación del Tratamiento (TPS) comerciales. El modelo analítico tiene un fundamento teórico consistente...

  16. Aberrations of the cathode objective lens up to fifth order.

    Tromp, R M; Wan, W; Schramm, S M

    2012-08-01

    In this paper we discuss a topic that was close to Prof. Gertrude Rempfer s interests for many years. On this occasion of her 100th birthday, we remember and honor Gertrude for her many outstanding contributions, and for the inspiring example that she set. We derive theoretical expressions for the aberration coefficients of the uniform electrostatic field up to 5th order and compare these with raytracing calculations for the cathode lens used in Low Energy Electron Microscopy and Photo Electron Emission Microscopy experiments. These higher order aberration coefficients are of interest for aberration corrected experiments in which chromatic (C(c)) and spherical (C₃) aberrations of the microscope are set to zero. The theoretical predictions are in good agreement with the results of raytracing. Calculations of image resolution using the Contrast Transfer Function method show that sub-nanometer resolution is achievable in an aberration corrected LEEM system. PMID:22188906

  17. Alteration of introns in a hyaluronan synthase 1 (HAS1 minigene convert Pre-mRNA [corrected] splicing to the aberrant pattern in multiple myeloma (MM: MM patients harbor similar changes.

    Jitra Kriangkum

    Full Text Available Aberrant pre-mRNA splice variants of hyaluronan synthase 1 (HAS1 have been identified in malignant cells from cancer patients. Bioinformatic analysis suggests that intronic sequence changes can underlie aberrant splicing. Deletions and mutations were introduced into HAS1 minigene constructs to identify regions that can influence aberrant intronic splicing, comparing the splicing pattern in transfectants with that in multiple myeloma (MM patients. Introduced genetic variations in introns 3 and 4 of HAS1 as shown here can promote aberrant splicing of the type detected in malignant cells from MM patients. HAS1Vd is a novel intronic splice variant first identified here. HAS1Vb, an intronic splice variant previously identified in patients, skips exon 4 and utilizes the same intron 4 alternative 3'splice site as HAS1Vd. For transfected constructs with unaltered introns 3 and 4, HAS1Vd transcripts are readily detectable, frequently to the exclusion of HAS1Vb. In contrast, in MM patients, HAS1Vb is more frequent than HAS1Vd. In the HAS1 minigene, combining deletion in intron 4 with mutations in intron 3 leads to a shift from HAS1Vd expression to HAS1Vb expression. The upregulation of aberrant splicing, exemplified here by the expression of HAS1Vb, is shown here to be influenced by multiple genetic changes in intronic sequences. For HAS1Vb, this includes enhanced exon 4 skipping and increased usage of alternative 3' splice sites. Thus, the combination of introduced mutations in HAS1 intron3 with introduced deletions in HAS1 intron 4 promoted a shift to an aberrant splicing pattern previously shown to be clinically significant. Most MM patients harbor genetic variations in intron 4, and as shown here, nearly half harbor recurrent mutations in HAS1 intron 3. Our work suggests that aberrant intronic HAS1 splicing in MM patients may rely on intronic HAS1 deletions and mutations that are frequent in MM patients but absent from healthy donors.

  18. Fast algorithms for generating binary holograms

    Stuart, Dustin; Kuhn, Axel

    2014-01-01

    We describe three algorithms for generating binary-valued holograms. Our methods are optimised for producing large arrays of tightly focussed optical tweezers for trapping particles. Binary-valued holograms allow us to use a digital mirror device (DMD) as the display element, which is much faster than other alternatives. We describe how our binary amplitude holograms can be used to correct for phase errors caused by optical aberrations. Furthermore, we compare the speed and accuracy of the algorithms for both periodic and arbitrary arrangements of traps, which allows one to choose the ideal scheme depending on the circumstances.

  19. Estimation of dose from chromosome aberration rate

    The methods and skills of evaluating dose from correctly scored shromsome aberration rate are presented, and supplemented with corresponding BASIC computer code. The possibility and preventive measures of excessive probability of missing score of the aberrations in some of the current routine score methods are discussed. The use of dose-effect relationship with exposure time correction factor G in evaluating doses and their confidence intervals, dose estimation in mixed n-γ exposure, and identification of high by nonuniform acute exposure to low LET radiation and its dose estimation are discussed in more detail. The difference of estimated dose due to whether the interaction between subleisoms produced by n and γ have been taken into account is examined. In fitting the standard dose-aberration rate curve, proper weighing of experiment points and comparison with commonly accepted values are emphasised, and the coefficient of variation σy√y of the aberration rate y as a function of dose and exposure time is given. In appendix I and II, the dose-aberration rate formula is derived from dual action theory, and the time variation of subleisom is illustrated and in appendix III, the estimation of dose from scores of two different types of aberrations (of other related score) is illustrated. Two computer codes are given in appendix IV, one is a simple code, the other a complete code, including the fitting of standard curve. the skills of using compressed data storage, and the production of simulated 'data ' for testing the curve fitting procedure are also given

  20. A dose calculation algorithm with correction for proton-nucleus interactions in non-water materials for proton radiotherapy treatment planning

    Inaniwa, T.; Kanematsu, N.; Sato, S.; Kohno, R.

    2016-01-01

    In treatment planning for proton radiotherapy, the dose measured in water is applied to the patient dose calculation with density scaling by stopping power ratio {ρ\\text{S}} . Since the body tissues are chemically different from water, this approximation may cause dose calculation errors, especially due to differences in nuclear interactions. We proposed and validated an algorithm for correcting these errors. The dose in water is decomposed into three constituents according to the physical interactions of protons in water: the dose from primary protons continuously slowing down by electromagnetic interactions, the dose from protons scattered by elastic and/or inelastic interactions, and the dose resulting from nonelastic interactions. The proportions of the three dose constituents differ between body tissues and water. We determine correction factors for the proportion of dose constituents with Monte Carlo simulations in various standard body tissues, and formulated them as functions of their {ρ\\text{S}} for patient dose calculation. The influence of nuclear interactions on dose was assessed by comparing the Monte Carlo simulated dose and the uncorrected dose in common phantom materials. The influence around the Bragg peak amounted to  -6% for polytetrafluoroethylene and 0.3% for polyethylene. The validity of the correction method was confirmed by comparing the simulated and corrected doses in the materials. The deviation was below 0.8% for all materials. The accuracy of the correction factors derived with Monte Carlo simulations was separately verified through irradiation experiments with a 235 MeV proton beam using common phantom materials. The corrected doses agreed with the measurements within 0.4% for all materials except graphite. The influence on tumor dose was assessed in a prostate case. The dose reduction in the tumor was below 0.5%. Our results verify that this algorithm is practical and accurate for proton radiotherapy treatment planning, and

  1. Patient-specific scatter correction in clinical cone beam computed tomography imaging made possible by the combination of Monte Carlo simulations and a ray tracing algorithm

    Purpose: Cone beam computed tomography (CBCT) image quality is limited by scattered photons. Monte Carlo (MC) simulations provide the ability of predicting the patient-specific scatter contamination in clinical CBCT imaging. Lengthy simulations prevent MC-based scatter correction from being fully implemented in a clinical setting. This study investigates the combination of using fast MC simulations to predict scatter distributions with a ray tracing algorithm to allow calibration between simulated and clinical CBCT images. Material and methods: An EGSnrc-based user code (egscbct), was used to perform MC simulations of an Elekta XVI CBCT imaging system. A 60keV x-ray source was used, and air kerma scored at the detector plane. Several variance reduction techniques (VRTs) were used to increase the scatter calculation efficiency. Three patient phantoms based on CT scans were simulated, namely a brain, a thorax and a pelvis scan. A ray tracing algorithm was used to calculate the detector signal due to primary photons. A total of 288 projections were simulated, one for each thread on the computer cluster used for the investigation. Results: Scatter distributions for the brain, thorax and pelvis scan were simulated within 2 % statistical uncertainty in two hours per scan. Within the same time, the ray tracing algorithm provided the primary signal for each of the projections. Thus, all the data needed for MC-based scatter correction in clinical CBCT imaging was obtained within two hours per patient, using a full simulation of the clinical CBCT geometry. Conclusions: This study shows that use of MC-based scatter corrections in CBCT imaging has a great potential to improve CBCT image quality. By use of powerful VRTs to predict scatter distributions and a ray tracing algorithm to calculate the primary signal, it is possible to obtain the necessary data for patient specific MC scatter correction within two hours per patient

  2. Validation of Correction Algorithms for Near-IR Analysis of Human Milk in an Independent Sample Set-Effect of Pasteurization.

    Kotrri, Gynter; Fusch, Gerhard; Kwan, Celia; Choi, Dasol; Choi, Arum; Al Kafi, Nisreen; Rochow, Niels; Fusch, Christoph

    2016-03-01

    Commercial infrared (IR) milk analyzers are being increasingly used in research settings for the macronutrient measurement of breast milk (BM) prior to its target fortification. These devices, however, may not provide reliable measurement if not properly calibrated. In the current study, we tested a correction algorithm for a Near-IR milk analyzer (Unity SpectraStar, Brookfield, CT, USA) for fat and protein measurements, and examined the effect of pasteurization on the IR matrix and the stability of fat, protein, and lactose. Measurement values generated through Near-IR analysis were compared against those obtained through chemical reference methods to test the correction algorithm for the Near-IR milk analyzer. Macronutrient levels were compared between unpasteurized and pasteurized milk samples to determine the effect of pasteurization on macronutrient stability. The correction algorithm generated for our device was found to be valid for unpasteurized and pasteurized BM. Pasteurization had no effect on the macronutrient levels and the IR matrix of BM. These results show that fat and protein content can be accurately measured and monitored for unpasteurized and pasteurized BM. Of additional importance is the implication that donated human milk, generally low in protein content, has the potential to be target fortified. PMID:26927169

  3. Ocular aberrations after wavefront optimized LASIK for myopia

    Padmanabhan Prema

    2010-01-01

    Full Text Available Purpose: To study the change in ocular aberrations after wavefront optimized (WFO laser in situ keratomileusis ( Lasik for correction of myopia and to analyze causative factors that may influence them. Materials and Methods: This was a prospective case series. WFO Lasik was performed for the correction of myopia, using the hansatome (Bausch and Lomb microkeratome to create the flap and the Allegretto laser (Wavelight Technologie to perform the ablation. The Allegretto wave analyser (Tscherning-type measured the ocular aberrations prior to Lasik , one month and six months postoperatively. Results: The mean age of the 59 patients included in the study was 25±5.64 years and the mean spherical equivalent of the 117 eyes that underwent Lasik0 was -5.33±1.22 preoperatively and -0.21±0.38 postoperatively. Hundred and two eyes of 117 (87% achieved uncorrected visual acuity (UCVA of 20/20 or better after WFO Lasik and 104 of 117 eyes (89% were within ±0.5D of the attempted refractive correction. There was a 1.96-fold increase in total root-mean-square of higher order aberrations. Induced changes in seven of the 22 higher order Zernike terms showed a significant linear correlation with the refractive correction attempted. Larger ablation zones induced less spherical aberration. Conclusion: In spite of an excellent visual outcome, WFO Lasik induces significant higher order aberrations. Large ablation zones reduce the induction of spherical aberration.

  4. Tailored displays to compensate for visual aberrations

    Pamplona, Vitor F.; Oliveira, Manuel M.; Aliaga, Daniel G.; Raskar, Ramesh

    2012-01-01

    We introduce tailored displays that enhance visual acuity by decomposing virtual objects and placing the resulting anisotropic pieces into the subject's focal range. The goal is to free the viewer from needing wearable optical corrections when looking at displays. Our tailoring process uses aberration and scattering maps to account for refractive errors and cataracts. It splits an object's light field into multiple instances that are each in-focus for a given eye sub-aperture. Their integrati...

  5. Correction of Faulty Sensors in Phased Array Radars Using Symmetrical Sensor Failure Technique and Cultural Algorithm with Differential Evolution

    Khan, S. U.; I.M. Qureshi; F. Zaman; B. Shoaib; A. Naveed; Basit, A.

    2014-01-01

    Three issues regarding sensor failure at any position in the antenna array are discussed. We assume that sensor position is known. The issues include raise in sidelobe levels, displacement of nulls from their original positions, and diminishing of null depth. The required null depth is achieved by making the weight of symmetrical complement sensor passive. A hybrid method based on memetic computing algorithm is proposed. The hybrid method combines the cultural algorithm with differential evol...

  6. Multi-actuator adaptive lens for wavefront correction in optical coherence tomography and two-photon excitation fluorescence microscopy (Conference Presentation)

    Bonora, Stefano; Lee, Sujin; Jian, Yifan; Cua, Michelle; Pugh, Edward N.; Zawadzki, Robert J.; Sarunic, Marinko V.

    2016-03-01

    We present a new type of adaptive lens with 18 actuators that can correct up the 4th order of aberration. The Multi-actuator Adaptive Lens (M-AL) can guarantee a good level of aberration correction for many applications and, with respect to deformable mirror, it allows the realization of more compact and simple optical systems. The adaptive lens is based on the use of piezoelectric actuators and, without any obstruction or electrodes in the clear aperture, can guarantee a fast response time, in the order of about 10ms. The clear aperture of the M-AL allows its use in "classical" Adaptive Optics configuration together with a wavefront sensor. To introduce a further simplification to the optical system design we show that the adaptive lens can be also driven with a wavefront sensorless control algorithm during in vivo optical coherence tomography of the human retina and for two-photon excitation fluorescence microscopy. In the experimental setup we used two aberration correcting devices a commercial adaptive lens (AL) with a high dynamic range to correct for defocus and the Multi-actuator Adaptive Lens (M-AL) to correct for the Zernike aberrations up to the 4th order. Experimental results show that the ocular aberrations of human eyes can be successfully corrected with our M-AL for pupils of 5mm and that retinal cones can be readily imaged.

  7. Safety, Efficacy, Predictability and Stability Indices of Photorefractive Keratectomy for Correction of Myopic Astigmatism with Plano-Scan and Tissue-Saving Algorithms

    Mehrdad Mohammadpour

    2013-10-01

    Full Text Available Purpose: To assess the safety, efficacy and predictability of photorefractive keratectomy (PRK [Tissue-saving (TS versus Plano-scan (PS ablation algorithms] of Technolas 217z excimer laser for correction of myopic astigmatismMethods: In this retrospective study one hundred and seventy eyes of 85 patients (107 eyes (62.9% with PS and 63 eyes (37.1% with TS algorithm were included. TS algorithm was applied for those with central corneal thickness less than 500 µm or estimated residual stromal thickness less than 420 µm. Mitomycin C (MMC was applied for 120 eyes (70.6%; in case of an ablation depth more than 60 μm and/or astigmatic correction more than one diopter (D. Mean sphere, cylinder, spherical equivalent (SE refraction, uncorrected visual acuity (UCVA, best corrected visual acuity (BCVA were measured preoperatively, and 4 weeks,12 weeks and 24 weeks postoperatively.Results: One, three and six months postoperatively, 60%, 92.9%, 97.5% of eyes had UCVA of 20/20 or better, respectively. Mean preoperative and 1, 3, 6 months postoperative SE were -3.48±1.28 D (-1.00 to -8.75, -0.08±0.62D, -0.02±0.57 and -0.004± 0.29, respectively. And also, 87.6%, 94.1% and 100% were within ±1.0 D of emmetropia and 68.2, 75.3, 95% were within ±0.5 of emmetropia. The safety and efficacy indices were 0.99 and 0.99 at 12 weeks and 1.009 and 0.99 at 24 weeks, respectively. There was no clinically or statistically significant difference between the outcomes of PS or TS algorithms or between those with or without MMC in either group in terms of safety, efficacy, predictability or stability. Dividing the eyes with subjective SE≤4 D and SE≥4 D postoperatively, there was no significant difference between the predictability of the two groups. There was no intra- or postoperative complication.Conclusion: Outcomes of PRK for correction of myopic astigmatism showed great promise with both PS and TS algorithms.

  8. Aberrations of the cathode objective lens up to fifth order

    Tromp, R.M., E-mail: rtromp@us.ibm.com [Thomas J. Watson Research Center, IBM Research Division, 1101 Kitchawan Road, P.O. Box 218, Yorktown Heights, NY 10598 (United States); Leiden University, Kamerlingh Onnes Laboratorium, P.O. Box 9504, NL-2300 RA Leiden (Netherlands); Wan, W. [Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 80R0114, Berkeley, CA 94720 (United States); Schramm, S.M. [Leiden University, Kamerlingh Onnes Laboratorium, P.O. Box 9504, NL-2300 RA Leiden (Netherlands)

    2012-08-15

    In this paper we discuss a topic that was close to Prof. Gertrude Rempfer s interests for many years. On this occasion of her 100th birthday, we remember and honor Gertrude for her many outstanding contributions, and for the inspiring example that she set. We derive theoretical expressions for the aberration coefficients of the uniform electrostatic field up to 5th order and compare these with raytracing calculations for the cathode lens used in Low Energy Electron Microscopy and Photo Electron Emission Microscopy experiments. These higher order aberration coefficients are of interest for aberration corrected experiments in which chromatic (C{sub c}) and spherical (C{sub 3}) aberrations of the microscope are set to zero. The theoretical predictions are in good agreement with the results of raytracing. Calculations of image resolution using the Contrast Transfer Function method show that sub-nanometer resolution is achievable in an aberration corrected LEEM system. -- Highlights: Black-Right-Pointing-Pointer A theory is presented for the aberrations of the uniform electrostatic field up to fifth order. Black-Right-Pointing-Pointer Such aberrations are important for advanced LEEM and PEEM instruments. Black-Right-Pointing-Pointer Good agreement between theory and raytracing results for a full cathode objective lens. Black-Right-Pointing-Pointer Contrast Transfer Function calculations predict that spatial resolution below 1 nm is achievable.

  9. Correction of Faulty Sensors in Phased Array Radars Using Symmetrical Sensor Failure Technique and Cultural Algorithm with Differential Evolution

    S. U. Khan

    2014-01-01

    Full Text Available Three issues regarding sensor failure at any position in the antenna array are discussed. We assume that sensor position is known. The issues include raise in sidelobe levels, displacement of nulls from their original positions, and diminishing of null depth. The required null depth is achieved by making the weight of symmetrical complement sensor passive. A hybrid method based on memetic computing algorithm is proposed. The hybrid method combines the cultural algorithm with differential evolution (CADE which is used for the reduction of sidelobe levels and placement of nulls at their original positions. Fitness function is used to minimize the error between the desired and estimated beam patterns along with null constraints. Simulation results for various scenarios have been given to exhibit the validity and performance of the proposed algorithm.

  10. Cosmological parameter estimation: impact of CMB aberration

    The peculiar motion of an observer with respect to the CMB rest frame induces an apparent deflection of the observed CMB photons, i.e. aberration, and a shift in their frequency, i.e. Doppler effect. Both effects distort the temperature multipoles alm's via a mixing matrix at any l. The common lore when performing a CMB based cosmological parameter estimation is to consider that Doppler affects only the l = 1 multipole, and neglect any other corrections. In this paper we reconsider the validity of this assumption, showing that it is actually not robust when sky cuts are included to model CMB foreground contaminations. Assuming a simple fiducial cosmological model with five parameters, we simulated CMB temperature maps of the sky in a WMAP-like and in a Planck-like experiment and added aberration and Doppler effects to the maps. We then analyzed with a MCMC in a Bayesian framework the maps with and without aberration and Doppler effects in order to assess the ability of reconstructing the parameters of the fiducial model. We find that, depending on the specific realization of the simulated data, the parameters can be biased up to one standard deviation for WMAP and almost two standard deviations for Planck. Therefore we conclude that in general it is not a solid assumption to neglect aberration in a CMB based cosmological parameter estimation

  11. Patient-specific scatter correction in clinical cone beam computed tomography imaging made possible by the combination of Monte Carlo simulations and a ray tracing algorithm

    Slot Thing, Rune; Bernchou, Uffe; Mainegra-Hing, Ernesto;

    2013-01-01

    _cbct), was used to perform MC simulations of an Elekta XVI CBCT imaging system. A 60keV x-ray source was used, and air kerma scored at the detector plane. Several variance reduction techniques (VRTs) were used to increase the scatter calculation efficiency. Three patient phantoms based on CT scans were...... simulated, namely a brain, a thorax and a pelvis scan. A ray tracing algorithm was used to calculate the detector signal due to primary photons. A total of 288 projections were simulated, one for each thread on the computer cluster used for the investigation. Results. Scatter distributions for the brain......, thorax and pelvis scan were simulated within 2% statistical uncertainty in two hours per scan. Within the same time, the ray tracing algorithm provided the primary signal for each of the projections. Thus, all the data needed for MC-based scatter correction in clinical CBCT imaging was obtained within...

  12. Investigations on control algorithm of steady-state cornering and control strategy for dynamical correction in a steer-by-wire system

    Ying XU; Chang-fu ZONG; Hsiao-hsiang NA; Lei LIU

    2009-01-01

    To improve the handling performance of a steer-by-wire (SBW) vehicle, a series of control logics are proposed. Firstly,an algorithm for enhancing the maneuvering in steady-state cornering is presented. On this basis, two categories of control strategies are used to dynamically correct and compensate the transient state steering responses and vehicle behaviors. Simulator tests including subjective evaluations and virtual field tests are both conducted to make comprehensive investigations on the series of control logics. The subjective evaluations demonstrate that the SBW vehicle with a specifically selected value of steering sensitivity tends to be more desirable for driving than a conventional one in which a fixed steering ratio exists. The virtual field tests indicate that the control strategies for dynamical correction and compensation could effectively improve the handling performances of an SBW vehicle by reducing the work load of drivers, enhancing the track-holding performance, and improving steering response properties.

  13. A correct even-odd algorithm for the point-in-polygon (PIP) problem for complex polygons

    Galetzka, Michael; Glauner, Patrick O.

    2012-01-01

    Determining if a point is in a polygon or not is used by a lot of applications in computer graphics, computer games and geoinformatics. Implementing this check is error-prone since there are many special cases to be considered. In this paper we present a simple even-odd algorithm to solve this problem for complex polygons in linear time.

  14. Insulin dose during glucocorticoid treatment for fetal lung maturation in diabetic pregnancy: test of an algorithm [correction of analgoritm

    Mathiesen, Elisabeth R; Christensen, Ann-Birgitte L; Hellmuth, Ellinor;

    2002-01-01

    Poor glycemic control is often a serious clinical problem during glucocorticoid treatment for fetal lung maturation in pregnant women with diabetes. An algorithm for improved subcutaneous insulin treatment during glucocorticoid treatment in insulin-dependent diabetic women was developed and tested....

  15. Analysis of vegetation by the application of a physically-based atmospheric correction algorithm to OLI data: a case study of Leonessa Municipality, Italy

    Mei, Alessandro; Manzo, Ciro; Petracchini, Francesco; Bassani, Cristiana

    2016-04-01

    Remote sensing techniques allow to estimate vegetation parameters related to large areas for forest health evaluation and biomass estimation. Moreover, the parametrization of specific indices such as Normalized Difference Vegetation Index (NDVI) allows to study biogeochemical cycles and radiative energy transfer processes between soil/vegetation and atmosphere. This paper focuses on the evaluation of vegetation cover analysis in Leonessa Municipality, Latium Region (Italy) by the use of 2015 Landsat 8 applying the OLI@CRI (OLI ATmospherically Corrected Reflectance Imagery) algorithm developed following the procedure described in Bassani et al. 2015. The OLI@CRI is based on 6SV radiative transfer model (Kotchenova et al., 2006) ables to simulate the radiative field in the atmosphere-earth coupled system. NDVI was derived from the OLI corrected image. This index, widely used for biomass estimation and vegetation analysis cover, considers the sensor channels falling in the near infrared and red spectral regions which are sensitive to chlorophyll absorption and cell structure. The retrieved product was then spatially resampled at MODIS image resolution and then validated by the NDVI of MODIS considered as reference. The physically-based OLI@CRI algorithm also provides the incident solar radiation at ground at the acquisition time by 6SV simulation. Thus, the OLI@CRI algorithm completes the remote sensing dataset required for a comprehensive analysis of the sub-regional biomass production by using data of the new generation remote sensing sensor and an atmospheric radiative transfer model. If the OLI@CRI algorithm is applied to a temporal series of OLI data, the influence of the solar radiation on the above-ground vegetation can be analysed as well as vegetation index variation.

  16. An algorithm for estimation and correction of anisotropic magnification distortion of cryo-EM images without need of pre-calibration.

    Yu, Guimei; Li, Kunpeng; Liu, Yue; Chen, Zhenguo; Wang, Zhiqing; Yan, Rui; Klose, Thomas; Tang, Liang; Jiang, Wen

    2016-08-01

    Anisotropic magnification distortion of TEM images (mainly the elliptic distortion) has been recently found as a potential resolution-limiting factor in single particle 3-D reconstruction. Elliptic distortions of ∼1-3% have been reported for multiple microscopes under low magnification settings (e.g., 18,000×), which significantly limited the achievable resolution of single particle 3-D reconstruction, especially for large particles. Here we report a generic algorithm that formulates the distortion correction problem as a generalized 2-D alignment task and estimates the distortion parameters directly from the particle images. Unlike the present pre-calibration methods, our computational method is applicable to all datasets collected at a broad range of magnifications using any microscope without need of additional experimental measurements. Moreover, the per-micrograph and/or per-particle level elliptic distortion estimation in our method could resolve potential distortion variations within a cryo-EM dataset, and further improve the 3-D reconstructions relative to constant-value correction by the pre-calibration methods. With successful applications to multiple datasets and cross-validation with the pre-calibration method, we have demonstrated the validity and robustness of our algorithm in estimating the distortion; correction of the elliptic distortion significantly improved the achievable resolutions by ∼1-3 folds and enabled 3-D reconstructions of multiple viral structures at 2.4-2.6Å resolutions. The resolution limits with elliptic distortion and the amounts of resolution improvements with distortion correction were found to strongly correlate with the product of the particle size and the amount of distortion, which can help assess if elliptic distortion is a major resolution limiting factor for single particle cryo-EM projects. PMID:27270241

  17. Quadrupole alignment and trajectory correction for future linear colliders. SLC tests of a dispersion-free steering algorithm

    An experimental study was made on quadrupole alignment with a dispersion-free steering algorithm aiming to demonstrate the performance of advanced beam-based alignment techniques in linear colliders and to anticipate possible reality-related problems. When the dispersion free steering algorithm was tested in the SLC at low current, the dispersion was reduced by factors of 2 - 5 as was shown with two methods; lattice scaling and energy changes. Unexpected limitations in the performance of the algorithm were observed. The causing limiting effects would be improved by cutting the overpopulated non-Gaussian tails of the measurements and monitoring of the SLC optics. Thus, a significantly improved performance of the method in future experiments at the SLC is expected. Dispersion-free and wakefield-free steering allow a fast alignment of the linac in less than roughly 10 minutes. However, both methods are more sensitive to systematic errors than the local beam-based alignment methods. And the local methods are significantly slower. The stability of quadrupole and BPM alignment will decide what method can be used with the highest efficiency. (M.N.)

  18. Methods and algorithms of the spelling control and correction on the basis of fuzzy qualifier with MIMO-structure

    Akmal Ahatov

    2011-01-01

    The paper shows results of developing the conceptual principles and methods in construction of hyper semantic net for natural languages spelling control and correction on a basis of neural networks and methods of fuzzy logic at the expense of expert knowledge and account of uncertainty. The ways of formalization are offered for linguistic variable and parameters, represented quantitatively and qualitative, and for performance of fuzzy sets membership functions. The operability of net includin...

  19. Evaluation of the Analytical Anisotropic Algorithm (AAA) in dose calculation for fields with non-uniform fluences considering heterogeneity correction

    The purpose of this study is to evaluate the calculation of dose distribution AAA (Varian Medical Systems) for fields with non-uniform fluences considering heterogeneity correction. Five different phantoms were used with different density materials. These phantoms were scanned in the CT BrightSpeed (©GE Healthcare) upon the array of detectors MAPCHECK2 TM (Sun Nuclear Corporation) and irradiated in a linear accelerator 600 CD (Varian Medical Systems) 6MV and rate dose 400MU/min with isocentric setup. The fluences used were exported from IMRT plans, calculated by ECLIPSE™ planning system (Varian Medical Systems), and a 10x10 cm2 field to assess the heterogeneity correction for uniform fluence. The measured dose distribution was compared to the calculated by Gamma analysis with approval criteria of 3% / 3 mm and 10% threshold. The evaluation was performed using the software SNCPatient (Sun Nuclear Corporation) and considering absolute dose normalized at maximum. The phantoms best performers were those with low density materials, with an average of 99.2% approval. Already phantoms with plates of higher density material presented various fluences below 95% of the points approved. The average value reached 94.3%. It was observed a dependency between fluency and approved percentage points, whereas for the same fluency, 100% of the points have been approved in all phantoms. The approval criteria for IMRT plans recommended in most centers is 3% / 3mm with at least 95% of points approved, it can be concluded that, under these conditions, the IMRT plans with heterogeneity correction can be performed , however the quality control must be careful because the difficulty of the system to accurately predict the dose distribution in certain situations. (author)

  20. Retrieval of wave aberration of human eyes from actual point-spread-function data.

    Artal, Pablo; Santamaría, J.; Bescós, J.

    1988-01-01

    The wave aberration of human eyes is retrieved from actual point-spread-function (PSF) data and the modulus of the pupil function. The PSF had been obtained previously by application of a hybrid optical-digital method developed recently. The retrieval is done by using a bidimensional Gerchberg-Saxton phase-retrieval algorithm joined to an iterative phase-unwrapping algorithm. To obtain an adequate convergence, the initial wave aberration for starting the retrieval-unwrapping algorithm is esti...

  1. Methods and algorithms of the spelling control and correction on the basis of fuzzy qualifier with MIMO-structure

    Akmal Ahatov

    2011-11-01

    Full Text Available The paper shows results of developing the conceptual principles and methods in construction of hyper semantic net for natural languages spelling control and correction on a basis of neural networks and methods of fuzzy logic at the expense of expert knowledge and account of uncertainty. The ways of formalization are offered for linguistic variable and parameters, represented quantitatively and qualitative, and for performance of fuzzy sets membership functions. The operability of net including various nodes of graph model is tested. The realization of net is carried out on the basis of model with MIMO-structure, combining in itself property of the neuro-fuzzy qualifier and fuzzy production system.

  2. The impact of aberrations on object reconstruction with interferometric synthetic aperture microscopy

    Adie, Steven G.; Graf, Benedikt W.; Ahmad, Adeel; Darbarsyah, Budiman; Boppart, Stephen A.; Carney, P. Scott

    2011-03-01

    Interferometric synthetic aperture microscopy (ISAM) reconstructs the scattering potential of a sample with spatially invariant resolution, based on the incident beam profile, the beam scan pattern, the physical model of light sample interaction, and subsequent light collection by the system. In practice, aberrations may influence the beam profile, particularly at higher NA, when ISAM is expected to provide maximum benefit over optical coherence microscopy. Thus it is of interest to determine the effects of aberrations on ISAM reconstructions. In this paper we present the forward model incorporating the effects of aberrations, which forms the basis for aberration correction in ISAM. Simulations and experimental results show that when operating far from focus, modest amounts of spherical aberration can introduce artifacts to the point-spread function, even at relatively low NA ~ 0.1-0.2. Further work will investigate computational methods to correct the effects of aberrations, i.e. to perform virtual adaptive optics.

  3. SU-E-I-05: A Correction Algorithm for Kilovoltage Cone-Beam Computed Tomography Dose Calculations in Cervical Cancer Patients

    Purpose: To investigate the accuracy and feasibility of dose calculations using kilovoltage cone beam computed tomography in cervical cancer radiotherapy using a correction algorithm. Methods: The Hounsfield units (HU) and electron density (HU-density) curve was obtained for both planning CT (pCT) and kilovoltage cone beam CT (CBCT) using a CIRS-062 calibration phantom. The pCT and kV-CBCT images have different HU values, and if the HU-density curve of CBCT was directly used to calculate dose in CBCT images may have a deviation on dose distribution. It is necessary to normalize the different HU values between pCT and CBCT. A HU correction algorithm was used for CBCT images (cCBCT). Fifteen intensity-modulated radiation therapy (IMRT) plans of cervical cancer were chosen, and the plans were transferred to the pCT and cCBCT data sets without any changes for dose calculations. Phantom and patient studies were carried out. The dose differences and dose distributions were compared between cCBCT plan and pCT plan. Results: The HU number of CBCT was measured by several times, and the maximum change was less than 2%. To compare with pCT, the CBCT and cCBCT has a discrepancy, the dose differences in CBCT and cCBCT images were 2.48%±0.65% (range: 1.3%∼3.8%) and 0.48%±0.21% (range: 0.1%∼0.82%) for phantom study, respectively. For dose calculation in patient images, the dose differences were 2.25%±0.43% (range: 1.4%∼3.4%) and 0.63%±0.35% (range: 0.13%∼0.97%), respectively. And for the dose distributions, the passing rate of cCBCT was higher than the CBCTs. Conclusion: The CBCT image for dose calculation is feasible in cervical cancer radiotherapy, and the correction algorithm offers acceptable accuracy. It will become a useful tool for adaptive radiation therapy

  4. SU-E-I-05: A Correction Algorithm for Kilovoltage Cone-Beam Computed Tomography Dose Calculations in Cervical Cancer Patients

    Zhang, J; Zhang, W; Lu, J [Cancer Hospital of Shantou University Medical College, Shantou, Guangdong (China)

    2015-06-15

    Purpose: To investigate the accuracy and feasibility of dose calculations using kilovoltage cone beam computed tomography in cervical cancer radiotherapy using a correction algorithm. Methods: The Hounsfield units (HU) and electron density (HU-density) curve was obtained for both planning CT (pCT) and kilovoltage cone beam CT (CBCT) using a CIRS-062 calibration phantom. The pCT and kV-CBCT images have different HU values, and if the HU-density curve of CBCT was directly used to calculate dose in CBCT images may have a deviation on dose distribution. It is necessary to normalize the different HU values between pCT and CBCT. A HU correction algorithm was used for CBCT images (cCBCT). Fifteen intensity-modulated radiation therapy (IMRT) plans of cervical cancer were chosen, and the plans were transferred to the pCT and cCBCT data sets without any changes for dose calculations. Phantom and patient studies were carried out. The dose differences and dose distributions were compared between cCBCT plan and pCT plan. Results: The HU number of CBCT was measured by several times, and the maximum change was less than 2%. To compare with pCT, the CBCT and cCBCT has a discrepancy, the dose differences in CBCT and cCBCT images were 2.48%±0.65% (range: 1.3%∼3.8%) and 0.48%±0.21% (range: 0.1%∼0.82%) for phantom study, respectively. For dose calculation in patient images, the dose differences were 2.25%±0.43% (range: 1.4%∼3.4%) and 0.63%±0.35% (range: 0.13%∼0.97%), respectively. And for the dose distributions, the passing rate of cCBCT was higher than the CBCTs. Conclusion: The CBCT image for dose calculation is feasible in cervical cancer radiotherapy, and the correction algorithm offers acceptable accuracy. It will become a useful tool for adaptive radiation therapy.

  5. Aberrations in asymmetrical electron lenses

    Starting from well established knowledge in light-optics we explore the question if electron-optical aberration can be improved in asymmetrical electron lenses. We show that spherical as well as chromatic aberration coefficients are reduced in asymmetric electrostatic einzel lenses when the center electrode is moved away from the center position towards the entrance electrode. Relative improvements up to 40% for both the chromatic and the spherical aberration coefficients can be obtained. We use analytical and numerical calculations to confirm this result for exemplary cases of a lens with fixed length and working distance. The agreement of the two calculation methods is very good. We then derive an estimate for the electron-optical aberration coefficients from light-optics. The derived expressions for chromatic and spherical aberrations are somewhat simpler than the ones derived from electron-optics as they involve integrals only over the electrostatic potential, not over the electron paths. The estimated formulas still agree well with the electron optical calculations. Overall, we are tempted to suggest that the enormous knowledge base of light optics can provide considerable guidance for electron-optical applications. -- Highlights: ► Develops the analogy between light and electron optics in aberration calculations. ► Optimized spherical and chromatic aberrations for an electrostatic einzel lens. ► Comparison between analytic and numerical aberration calculations.

  6. The Algorithm Theoretical Basis Document for the Atmospheric Delay Correction to GLAS Laser Altimeter Ranges. Volume 8

    Herring, Thomas A.; Quinn, Katherine J.

    2012-01-01

    NASA s Ice, Cloud, and Land Elevation Satellite (ICESat) mission will be launched late 2001. It s primary instrument is the Geoscience Laser Altimeter System (GLAS) instrument. The main purpose of this instrument is to measure elevation changes of the Greenland and Antarctic icesheets. To accurately measure the ranges it is necessary to correct for the atmospheric delay of the laser pulses. The atmospheric delay depends on the integral of the refractive index along the path that the laser pulse travels through the atmosphere. The refractive index of air at optical wavelengths is a function of density and molecular composition. For ray paths near zenith and closed form equations for the refractivity, the atmospheric delay can be shown to be directly related to surface pressure and total column precipitable water vapor. For ray paths off zenith a mapping function relates the delay to the zenith delay. The closed form equations for refractivity recommended by the International Union of Geodesy and Geophysics (IUGG) are optimized for ground based geodesy techniques and in the next section we will consider whether these equations are suitable for satellite laser altimetry.

  7. A simulation based approach to optimize inventory replenishment with RAND algorithm: An extended study of corrected demand using Holt's method for textile industry

    Morshed, Mohammad Sarwar; Kamal, Mostafa Mashnoon; Khan, Somaiya Islam

    2016-07-01

    Inventory has been a major concern in supply chain and numerous researches have been done lately on inventory control which brought forth a number of methods that efficiently manage inventory and related overheads by reducing cost of replenishment. This research is aimed towards providing a better replenishment policy in case of multi-product, single supplier situations for chemical raw materials of textile industries in Bangladesh. It is assumed that industries currently pursue individual replenishment system. The purpose is to find out the optimum ideal cycle time and individual replenishment cycle time of each product for replenishment that will cause lowest annual holding and ordering cost, and also find the optimum ordering quantity. In this paper indirect grouping strategy has been used. It is suggested that indirect grouping Strategy outperforms direct grouping strategy when major cost is high. An algorithm by Kaspi and Rosenblatt (1991) called RAND is exercised for its simplicity and ease of application. RAND provides an ideal cycle time (T) for replenishment and integer multiplier (ki) for individual items. Thus the replenishment cycle time for each product is found as T×ki. Firstly, based on data, a comparison between currently prevailing (individual) process and RAND is provided that uses the actual demands which presents 49% improvement in total cost of replenishment. Secondly, discrepancies in demand is corrected by using Holt's method. However, demands can only be forecasted one or two months into the future because of the demand pattern of the industry under consideration. Evidently, application of RAND with corrected demand display even greater improvement. The results of this study demonstrates that cost of replenishment can be significantly reduced by applying RAND algorithm and exponential smoothing models.

  8. The Digital Correction Unit: A data correction/compaction chip

    The Digital Correction Unit (DCU) is a semi-custom CMOS integrated circuit which corrects and compacts data for the SLD experiment. It performs a piece-wise linear correction to data, and implements two separate compaction algorithms. This paper describes the basic functionality of the DCU and its correction and compaction algorithms

  9. 基于KNN模型的层次纠错输出编码算法%Output code algorithm for ierarchical error correcting based on KNNModel

    辛轶; 郭躬德; 陈黎飞; 黄杰

    2009-01-01

    Error Correcting Output Codes (ECOC) is an effective algorithm to handle multi-class problem; however, the ECOC coding is only on the class level and the ECOC matrix is pre-designed. A novel classification algorithm based on hierarchical ECOC was proposed. The algorithm first used KNNModel to build multiple clusters on a given dataset and chose few clusters for each class as representatives to construct a hieratical coding matrix in training phase, and then the matrix was used to train each single classifier. In testing phase, the proposed method makes the most of the merits of KNNModel and ECOC through models combination. Experimental results in the UCI data sets show the effectiveness of the proposed method.%纠错输出编码是一种解决多类分类问题的有效方法,但其编码矩阵只对类进行编码且都采用事先构造出来的统一形式,适应性较差.为此,提出一种新颖的层次纠错输出编码算法.该算法在训练阶段先通过KNN模型算法在数据集上构建多个同类簇,选取各类中最具代表性的簇形成层次编码矩阵,然后再根据编码矩阵进行单分类器训练.在测试阶段,该算法通过模型融合进一步发挥KNN模型和纠错输出编码各自的优点.在UCI公共数据集上的实验结果表明,新方法的性能优于KNN模型算法和纠错输出编码算法.

  10. Ocular aberrations after wavefront optimized LASIK for myopia

    Padmanabhan Prema; Basuthkar Subam; Joseph Roy

    2010-01-01

    Purpose: To study the change in ocular aberrations after wavefront optimized (WFO) laser in situ keratomileusis ( Lasik ) for correction of myopia and to analyze causative factors that may influence them. Materials and Methods: This was a prospective case series. WFO Lasik was performed for the correction of myopia, using the hansatome (Bausch and Lomb) microkeratome to create the flap and the Allegretto laser (Wavelight Technologie) to perform the ablation. The Allegretto wave analyser ...

  11. Spelling Correction in Context

    Pinot, Guillaume; Enguehard, Chantal

    2005-01-01

    International audience Spelling checkers, frequently used nowadays, do not allow to correct real-word errors. Thus, the erroneous replacement of dessert by desert is not detected. We propose in this article an algorithm based on the examination of the context of words to correct this kind of spelling errors. This algorithm uses a training on a raw corpus.

  12. Spherical aberration from trajectories in real and hard-edge solenoid fields

    BISWAS B

    2016-06-01

    For analytical, real and hard-edge solenoidal axial magnetic fields, the low-energy electron trajectories are obtained using the third-order paraxial ray equation. Using the particle trajectories, it is shown that the spherical aberration in the hard-edge model is high and it increases monotonously with hard edginess, although the focal length converges, in agreement with a recentfield and spherical aberration model. The model paved the way for a hard-edge approximation that gives correct focal length and spherical aberration, which is verified here by the trajectory method. In essence, we show that exact hard-edge fields give infinite spherical aberrations.

  13. Study of the wavefront aberrations in children with amblyopia

    ZHAO Peng-fei; ZHOU Yue-hua; WANG Ning-li; ZHANG Jing

    2010-01-01

    Background Amblyopia is a common ophthalmological condition and the wavefront aberrometer is a relatively new diagnostic tool used globally to measure optical characteristics of human eyes as well as to study refractive errors in amblyopic eyes. We studied the wavefront aberration of the amblyopic children's eyes and analyzed the mechanism of the wavefront aberration in the formation of the amblyopia, try to investigate the new evidence of the treatment of the amblyopia, especially in the refractory amblyopia.Methods The WaveScan Wavefront System (VISX, USA) aberrometer was used to investigate four groups of children under dark accommodation and cilliary muscle paralysis. There were 45 cases in the metropic group, 87 in the amblyopic group, 92 in the corrected-amblyopic group and 38 in the refractory amblyopic group. One-way analysis of variance (ANOVA), t-test and multivariate linear regression were used to analyze all the data.Results Third order to 6th order aberrations showed a decreasing trend whereas in the higher order aberrations the main ones were 3rd order coma (Z3-1-Z31), trefoil (Z3-3-Z33) and 4th order aberration (Z40); and 3rd order coma represented the highest percentage of all three main aberrations. Within 3rd order coma, vertical coma (Z3-1) accounted for a greater percentage than horizontal coma (Z31). Significant differences of vertical coma were found among all clinical groups of children: vertical coma in the amblyopic group (0.17±0.15) was significantly higher than in the metropic group (0.11±0.13, P0.05).Conclusions Although lower order aberrations such as defocus (myopia and hyperopia) and astigmatism are major factors determining the quality of the retinal image, higher order aberrations also need to be considered in amblyopic eyes as their effects are significant.

  14. Adaptive optics full-field OCT: a resolution almost insensitive to aberrations (Conference Presentation)

    Xiao, Peng; Fink, Mathias; Boccara, A. Claude

    2016-03-01

    A Full-Field OCT (FFOCT) setup coupled to a compact transmissive liquid crystal spatial light modulator (LCSLM) is used to induce or correct aberrations and simulate eye examinations. To reduce the system complexity, strict pupil conjugation was abandoned. During our work on quantifying the effect of geometrical aberrations on FFOCT images, we found that the image resolution is almost insensitive to aberrations. Indeed if the object channel PSF is distorted, its interference with the reference channel conserves the main feature of an unperturbed PSF with only a reduction of the signal level. This unique behavior is specific to the use of a spatially incoherent illumination. Based on this, the FFOCT image intensity was used as the metric for our wavefront sensorless correction. Aberration correction was first conducted on an USAF resolution target with the LSCLM as both aberration generator and corrector. A random aberration mask was induced, and the low-order Zernike Modes were corrected sequentially according to the intensity metric function optimization. A Ficus leaf and a fixed mouse brain tissue slice were also imaged to demonstrate the correction of sample self-induced wavefront distortions. After optimization, more structured information appears for the leaf imaging. And the high-signal fiber-like myelin fiber structures were resolved much more clearly after the whole correction process for mouse brain imaging. Our experiment shows the potential of this compact AO-FFOCT system for aberration correction imaging. This preliminary approach that simulates eyes aberrations correction also opens the path to a simple implementation of FFOCT adaptive optics for retinal examinations.

  15. DNA Repair Defects and Chromosomal Aberrations

    Hada, Megumi; George, K. A.; Huff, J. L.; Pluth, J. M.; Cucinotta, F. A.

    2009-01-01

    Yields of chromosome aberrations were assessed in cells deficient in DNA doublestrand break (DSB) repair, after exposure to acute or to low-dose-rate (0.018 Gy/hr) gamma rays or acute high LET iron nuclei. We studied several cell lines including fibroblasts deficient in ATM (ataxia telangiectasia mutated; product of the gene that is mutated in ataxia telangiectasia patients) or NBS (nibrin; product of the gene mutated in the Nijmegen breakage syndrome), and gliomablastoma cells that are proficient or lacking in DNA-dependent protein kinase (DNA-PK) activity. Chromosomes were analyzed using the fluorescence in situ hybridization (FISH) chromosome painting method in cells at the first division post irradiation, and chromosome aberrations were identified as either simple exchanges (translocations and dicentrics) or complex exchanges (involving >2 breaks in 2 or more chromosomes). Gamma irradiation induced greater yields of both simple and complex exchanges in the DSB repair-defective cells than in the normal cells. The quadratic dose-response terms for both simple and complex chromosome exchanges were significantly higher for the ATM- and NBS-deficient lines than for normal fibroblasts. However, in the NBS cells the linear dose-response term was significantly higher only for simple exchanges. The large increases in the quadratic dose-response terms in these repair-defective cell lines points the importance of the functions of ATM and NBS in chromatin modifications to facilitate correct DSB repair and minimize the formation of aberrations. The differences found between ATM- and NBS-deficient cells at low doses suggest that important questions should with regard to applying observations of radiation sensitivity at high dose to low-dose exposures. For aberrations induced by iron nuclei, regression models preferred purely linear dose responses for simple exchanges and quadratic dose responses for complex exchanges. Relative biological effectiveness (RBE) factors of all of

  16. Fifth-order canonical geometric aberration analysis of electrostatic round lenses

    Liu Zhi Xiong

    2002-01-01

    In this paper the fifth-order canonical geometric aberration patterns are analyzed and a numerical example is given on the basis of the analytical expressions of fifth-order aberration coefficients derived in the present work. The fifth-order spherical aberration, astigmatism and field curvature, and distortion are similar to the third-order ones and the fifth-order coma is slightly different. Besides, there are two more aberrations which do not exist in the third-order aberration: they are peanut aberration and elliptical coma in accordance with their shapes. In the numerical example, by using a cross-check of the calculated coefficients with those computed through the differential algebraic method, it has been verified that all the expressions are correct and the computational results are reliable with high precision.

  17. Optimal incision sites to reduce corneal aberration variations after small incision phacoemulsification cataract surgery

    Chu, Ling; Zhao, Jiang-Yue; Zhang, Jin-Song; Meng, Jie; Wang, Ming-Wu; Yang, Ya-Jing; Yu, Jia-Ming

    2016-01-01

    AIM To analyze the effect of steep meridian small incision phacoemulsification cataract surgery on anterior, posterior and total corneal wavefront aberration. METHODS Steep meridian small incision phacoemulsification cataract surgery was performed in age-related cataract patients which were divided into three groups according to the incision site: 12 o'clock, 9 o'clock and between 9 and 12 o'clock (BENT) incision groups. The preoperative and 3-month postoperative root mean square (RMS) values of anterior, posterior and total corneal wavefront aberration including coma, spherical aberration, and total higher-order aberrations (HOAs), were measured by Pentacam scheimpflug imaging. The mean preoperative and postoperative corneal wavefront aberrations were documented. RESULTS Total corneal aberration and total lower-order aberrations decreased significantly in three groups after operation. RMS value of total HOAs decreased significantly postoperatively in the 12 o'clock incision group (Pastigmatism changes in all three corneal incision location. CONCLUSION Corneal incision of phacoemulsification cataract surgery can affect corneal wavefront aberration. The 12 o'clock corneal incision eliminated more HOAs and the spherical aberrations decreased in BENT incision group obviously when we selected steep meridian small incision. Cataract lens replacement using wavefront-corrected intraocular lens combined with optimized corneal incision site would improve ocular aberration results. PMID:27162725

  18. Minimizing camera-eye optical aberrations during the 3D reconstruction of retinal structures

    Aldana-Iuit, Javier; Martinez-Perez, M. Elena; Espinosa-Romero, Arturo; Diaz-Uribe, Rufino

    2010-05-01

    3D reconstruction of blood vessels is a powerful visualization tool for physicians, since it allows them to refer to qualitative representation of their subject of study. In this paper we propose a 3D reconstruction method of retinal vessels from fundus images. The reconstruction method propose herein uses images of the same retinal structure in epipolar geometry. Images are preprocessed by RISA system for segmenting blood vessels and obtaining feature points for correspondences. The correspondence points process is solved using correlation. The LMedS analysis and Graph Transformation Matching algorithm are used for outliers suppression. Camera projection matrices are computed with the normalized eight point algorithm. Finally, we retrieve 3D position of the retinal tree points by linear triangulation. In order to increase the power of visualization, 3D tree skeletons are represented by surfaces via generalized cylinders whose radius correspond to morphological measurements obtained by RISA. In this paper the complete calibration process including the fundus camera and the optical properties of the eye, the so called camera-eye system is proposed. On one hand, the internal parameters of the fundus camera are obtained by classical algorithms using a reference pattern. On the other hand, we minimize the undesirable efects of the aberrations induced by the eyeball optical system assuming that contact enlarging lens corrects astigmatism, spherical and coma aberrations are reduced changing the aperture size and eye refractive errors are suppressed adjusting camera focus during image acquisition. Evaluation of two self-calibration proposals and results of 3D blood vessel surface reconstruction are presented.

  19. Evaluation and Analysis of SEASAT-A Scanning Multichannel Microwave Radiometer (SSMR) Antenna Pattern Correction (APC) Algorithm. Sub-task 4: Interim Mode T Sub B Versus Cross and Nominal Mode T Sub B

    Kitzis, J. L.; Kitzis, S. N.

    1979-01-01

    The brightness temperature data produced by the SMMR Antenna Pattern Correction algorithm are evaluated. The evaluation consists of: (1) a direct comparison of the outputs of the interim, cross, and nominal APC modes; (2) a refinement of the previously determined cos beta estimates; and (3) a comparison of the world brightness temperature (T sub B) map with actual SMMR measurements.

  20. Impact of astigmatism and high-order aberrations on subjective best focus.

    Marcos, Susana; Velasco-Ocana, Miriam; Dorronsoro, Carlos; Sawides, Lucie; Hernandez, Martha; Marin, Gildas

    2015-08-01

    We studied the role of native astigmatism and ocular aberrations on best-focus setting and its shift upon induction of astigmatism in 42 subjects (emmetropes, myopes, hyperopes, with-the-rule [WTR] and against-the-rule [ATR] myopic astigmats). Stimuli were presented in a custom-developed adaptive optics simulator, allowing correction for native aberrations and astigmatism induction (+1 D; 6-mm pupil). Best-focus search consisted on randomized-step interleaved staircase method. Each subject searched best focus for four different images, and four different conditions (with/without aberration correction, with/without astigmatism induction). The presence of aberrations induced a significant shift in subjective best focus (0.4 D; p astigmatism produced a statistically significant shift of the best-focus setting in all groups under natural aberrations (p = 0.001), and in emmetropes and in WTR astigmats under corrected aberrations (p induced astigmatism was significantly different across groups, both for natural aberrations and AO-correction (p astigmats upon induction of astigmatism, symmetrically with respect to the best-focus shift in nonastigmatic myopes. The shifts are consistent with a bias towards vertical and horizontal retinal blur in WTR and ATR astigmats, respectively, indicating adaptation to native astigmatism. PMID:26237300

  1. Measurement of the atmospheric primary aberrations by 4-aperture DIMM

    Shomali, Ramin; Darudi, Ahmad

    2011-01-01

    The present paper investigates and discusses the ability of the Hartmann test with 4-aperture DIMM to measure the atmospheric primary aberrations which, in turn, can be used for calculation of the atmospheric coherence time. Through performing numerical simulations, we show that the 4-aperture DIMM is able to measure the defocus and astigmatism terms correctly while its results are not reliable for the coma. The most important limitation in the measurement of the primary aberrations by 4-aperture DIMM is the centroid displacements of the spots which are caused by the higher order aberrations. This effect is negligible in calculating of the defocus and astigmatisms, while, it cannot be ignored in the calculation of the coma.

  2. Aberrations in asymmetrical electron lenses.

    Fitzgerald, J P S; Word, R C; Könenkamp, R

    2012-08-01

    Starting from well established knowledge in light-optics we explore the question if electron-optical aberration can be improved in asymmetrical electron lenses. We show that spherical as well as chromatic aberration coefficients are reduced in asymmetric electrostatic einzel lenses when the center electrode is moved away from the center position towards the entrance electrode. Relative improvements up to 40% for both the chromatic and the spherical aberration coefficients can be obtained. We use analytical and numerical calculations to confirm this result for exemplary cases of a lens with fixed length and working distance. The agreement of the two calculation methods is very good. We then derive an estimate for the electron-optical aberration coefficients from light-optics. The derived expressions for chromatic and spherical aberrations are somewhat simpler than the ones derived from electron-optics as they involve integrals only over the electrostatic potential, not over the electron paths. The estimated formulas still agree well with the electron optical calculations. Overall, we are tempted to suggest that the enormous knowledge base of light optics can provide considerable guidance for electron-optical applications. PMID:22206603

  3. Comparison of two heterogeneity correction algorithms in pituitary gland treatments with intensity-modulated radiation therapy; Comparacao de dois algoritmos de correcao de heterogeneidade em tratamentos de tumores de hipofise com radioterapia de intensidade modulada

    Albino, Lucas D.; Santos, Gabriela R.; Ribeiro, Victor A.B.; Rodrigues, Laura N., E-mail: lucasdelbem1@gmail.com [Universidade de Sao Paulo (USP), Sao Paulo, SP (Brazil). Faculdade de Medicina. Instituto de Radiologia; Weltman, Eduardo; Braga, Henrique F. [Instituto do Cancer do Estado de Sao Paulo, Sao Paulo, SP (Brazil). Servico de Radioterapia

    2013-12-15

    The dose accuracy calculated by a treatment planning system is directly related to the chosen algorithm. Nowadays, several calculation doses algorithms are commercially available and they differ in calculation time and accuracy, especially when individual tissue densities are taken into account. The aim of this study was to compare two different calculation algorithms from iPlan®, BrainLAB, in the treatment of pituitary gland tumor with intensity-modulated radiation therapy (IMRT). These tumors are located in a region with variable electronic density tissues. The deviations from the plan with no heterogeneity correction were evaluated. To initial validation of the data inserted into the planning system, an IMRT plan was simulated in a anthropomorphic phantom and the dose distribution was measured with a radiochromic film. The gamma analysis was performed in the film, comparing it with dose distributions calculated with X-ray Voxel Monte Carlo (XVMC) algorithm and pencil beam convolution (PBC). Next, 33 patients plans, initially calculated by PBC algorithm, were recalculated with XVMC algorithm. The treatment volumes and organs-at-risk dose-volume histograms were compared. No relevant differences were found in dose-volume histograms between XVMC and PBC. However, differences were obtained when comparing each plan with the plan without heterogeneity correction. (author)

  4. Aberrations of diffracted wave fields.

    Harvey, J E; Shack, R V

    1978-09-15

    This paper is an attempt to provide new insight into the behavior of near-field scalar diffraction phenomena by showing that the Rayleigh-Sommerfeld diffraction integral is equivalent to the Fourier transform integral of a generalized pupil function which includes a term that represents phase errors in the aperture. This term can be interpreted as describing a conventional wavefront aberration function. The resulting aberration coefficients are calculated and expressed in terms of the aperture diameter, observation distance, and appropriate field parameter for several different geometrical configurations of incident beam and observation space. These aberrations, which are inherently associated with the diffraction process, are precisely the effects ignored when making the usual Fresnel and Fraunhofer approximations. PMID:20203910

  5. Chromosome Aberrations by Heavy Ions

    Ballarini, Francesca; Ottolenghi, Andrea

    It is well known that mammalian cells exposed to ionizing radiation can show different types of chromosome aberrations (CAs) including dicentrics, translocations, rings, deletions and complex exchanges. Chromosome aberrations are a particularly relevant endpoint in radiobiology, because they play a fundamental role in the pathways leading either to cell death, or to cell conversion to malignancy. In particular, reciprocal translocations involving pairs of specific genes are strongly correlated (and probably also causally-related) with specific tumour types; a typical example is the BCR-ABL translocation for Chronic Myeloid Leukaemia. Furthermore, aberrations can be used for applications in biodosimetry and more generally as biomarkers of exposure and risk, that is the case for cancer patients monitored during Carbon-ion therapy and astronauts exposed to space radiation. Indeed hadron therapy and astronauts' exposure to space radiation represent two of the few scenarios where human beings can be exposed to heavy ions. After a brief introduction on the main general features of chromosome aberrations, in this work we will address key aspects of the current knowledge on chromosome aberration induction, both from an experimental and from a theoretical point of view. More specifically, in vitro data will be summarized and discussed, outlining important issues such as the role of interphase death/mitotic delay and that of complex-exchange scoring. Some available in vivo data on cancer patients and astronauts will be also reported, together with possible interpretation problems. Finally, two of the few available models of chromosome aberration induction by ionizing radiation (including heavy ions) will be described and compared, focusing on the different assumptions adopted by the authors and on how these models can deal with heavy ions.

  6. Chlorophyll-a concentration estimation with three bio-optical algorithms: correction for the low concentration range for the Yiam Reservoir, Korea

    Bio-optical algorithms have been applied to monitor water quality in surface water systems. Empirical algorithms, such as Ritchie (2008), Gons (2008), and Gilerson (2010), have been applied to estimate the chlorophyll-a (chl-a) concentrations. However, the performance of each algorithm severely degr...

  7. Environmental Transmission Electron Microscopy in an Aberration-Corrected Environment

    Hansen, Thomas W.; Wagner, Jakob B.

    2012-01-01

    -resolution imaging. A gaseous atmosphere in the pole-piece gap of the objective lens of the microscope alters both the incoming electron wave prior to interaction with the sample and the outgoing wave below the sample. Whereas conventional TEM samples are usually thin (below 100 nm), the gas in the environmental...

  8. Aberration corrected STEM to study an ancient hair dyeing formula

    Patriarche, G.; Van Elslande, E.; Castaing, J.; Walter, P.

    2014-05-01

    Lead-based chemistry was initiated in ancient Egypt for cosmetic preparation more than 4000 years ago. Here, we study a hair-dyeing recipe using lead salts described in text since Greco-Roman times. We report direct evidence about the shape and distribution of PbS nanocrystals that form within the hair during blackening.

  9. Tomographic diffractive microscopy and multiview profilometry with flexible aberration correction.

    Liu, H; Bailleul, J; Simon, B; Debailleul, M; Colicchio, B; Haeberlé, O

    2014-02-01

    We have developed a tomographic diffractive microscope in reflection, which permits observation of sample surfaces with an improved lateral resolution, compared to a conventional holographic microscope. From the same set of data, high-precision measurements can be performed on the shape of the reflective surface by reconstructing the phase of the diffracted field. Doing so allows for several advantages compared to classical holographic interferometric measurements: improvement in lateral resolution, easier phase unwrapping, reduction of the coherent noise, combined with the high-longitudinal precision provided by interferometric phase measurements. We demonstrate these capabilities by imaging various test samples. PMID:24514193

  10. Electron Vortex Production and Control Using Aberration Induced Diffraction Catastrophes

    Petersen, T. C.; Weyland, M.; Paganin, D. M.; Simula, T. P.; Eastwood, S. A.; Morgan, M. J.

    2013-01-01

    An aberration corrected electron microscope is used to create electron diffraction catastrophes, containing arrays of intensity zeros threading vortex cores. Vortices are ascribed to these arrays using catastrophe theory, scalar diffraction integrals, and experimentally retrieved phase maps. From measured wave function phases, obtained using focal-series phase retrieval, the orbital angular momentum density is mapped for highly astigmatic electron probes. We observe vortex rings and topological reconnections of nodal lines by tracking the vortex cores using the retrieved phases.

  11. 基于PDE去鬼影的自适应非均匀性校正算法研究%PDE-based deghosting algorithm for correction of nonuniformity in infrared focal plane array

    张天序; 袁雅婧; 桑红石; 钟胜

    2012-01-01

    针对基于场景的自适应校正算法普遍存在鬼影的问题,分析了神经网络算法( NN-NUC)产生鬼影的原因,并在此基础上提出了用基于偏微分方程(PDE)的非线性滤波方法取代NN-NUC算法中邻域平均的方法来获取期望图像,从而减少边缘像素误差,达到消除鬼影的目的.采用实际采集的红外图像进行实验,结果表明,很好地消除了鬼影.与已有的几种去鬼影的方法相比,具有更快的收敛性.%Generally, most of adaptive nonuniformity correction algorithms have the ghosting artifact problem. In this paper, the cause of ghosting artifacts in Neural Network nonuniformity correction (NN-NUC) algorithm for infrared focal plane array (IRFPA) was studied. Based on the analysis, a novel algorithm for eliminating the ghosting artifact was proposed, which replaces the linear spatial average filter in the NN-NUC algorithm with the partial differential equation (PDE)-based nonlinear filter to estimate the desired image. The comparison experiment using real IRFPA infrared image shows that the proposed algorithm can effectively remove the ghosting artifact. Compared with several deghosting algorithms, the proposed algorithm converges much faster.

  12. Effects of residual aberrations explored on single-walled carbon nanotubes

    The effects of geometric residual aberrations such as coma B2 and two-fold astigmatism A1 on the contrast in aberration corrected high resolution transmission electron microscopy (HRTEM) images are investigated on single-walled carbon nanotubes (SWNT). The individual aberrations are adjusted and set up manually using an imaging CS-corrector. We demonstrate how coma B2 can be recognized by an experienced user directly in the image and how it blurs the contrast. Even with uncorrected (resolution limiting) spherical aberration CS the coma B2 has to be considered and must be minimized. Limits for a tolerable coma are given. The experiments are confirmed by image simulations. -- Highlights: ► Individual effects of residual aberrations such as B2, A1, and CS are demonstrated. ► Experimental HRTEM and simulated images of carbon nanotubes are compared. ► A detection limit of 50 nm B2 in a single HRTEM image is determined.

  13. Distortion of ultrashort pulses caused by aberrations

    Horváth, Z. L.; Kovács, A. P.; Bor, Zs.

    The effect of the primary wave aberrations (spherical aberration, astigmatism and coma) on ultrashort pulses is studied by the Nijboer-Zernike theory. The results of the geometrical and the wave optical treatments are compared.

  14. Sensitivity of Satellite-Based Skin Temperature to Different Surface Emissivity and NWP Reanalysis Sources Demonstrated Using a Single-Channel, Viewing-Angle-Corrected Retrieval Algorithm

    Scarino, B. R.; Minnis, P.; Yost, C. R.; Chee, T.; Palikonda, R.

    2015-12-01

    Single-channel algorithms for satellite thermal-infrared- (TIR-) derived land and sea surface skin temperature (LST and SST) are advantageous in that they can be easily applied to a variety of satellite sensors. They can also accommodate decade-spanning instrument series, particularly for periods when split-window capabilities are not available. However, the benefit of one unified retrieval methodology for all sensors comes at the cost of critical sensitivity to surface emissivity (ɛs) and atmospheric transmittance estimation. It has been demonstrated that as little as 0.01 variance in ɛs can amount to more than a 0.5-K adjustment in retrieved LST values. Atmospheric transmittance requires calculations that employ vertical profiles of temperature and humidity from numerical weather prediction (NWP) models. Selection of a given NWP model can significantly affect LST and SST agreement relative to their respective validation sources. Thus, it is necessary to understand the accuracies of the retrievals for various NWP models to ensure the best LST/SST retrievals. The sensitivities of the single-channel retrievals to surface emittance and NWP profiles are investigated using NASA Langley historic land and ocean clear-sky skin temperature (Ts) values derived from high-resolution 11-μm TIR brightness temperature measured from geostationary satellites (GEOSat) and Advanced Very High Resolution Radiometers (AVHRR). It is shown that mean GEOSat-derived, anisotropy-corrected LST can vary by up to ±0.8 K depending on whether CERES or MODIS ɛs sources are used. Furthermore, the use of either NOAA Global Forecast System (GFS) or NASA Goddard Modern-Era Retrospective Analysis for Research and Applications (MERRA) for the radiative transfer model initial atmospheric state can account for more than 0.5-K variation in mean Ts. The results are compared to measurements from the Surface Radiation Budget Network (SURFRAD), an Atmospheric Radiation Measurement (ARM) Program ground

  15. Artificial neural network for the determination of Hubble Space Telescope aberration from stellar images

    Barrett, Todd K.; Sandler, David G.

    1993-01-01

    An artificial-neural-network method, first developed for the measurement and control of atmospheric phase distortion, using stellar images, was used to estimate the optical aberration of the Hubble Space Telescope. A total of 26 estimates of distortion was obtained from 23 stellar images acquired at several secondary-mirror axial positions. The results were expressed as coefficients of eight orthogonal Zernike polynomials: focus through third-order spherical. For all modes other than spherical the measured aberration was small. The average spherical aberration of the estimates was -0.299 micron rms, which is in good agreement with predictions obtained when iterative phase-retrieval algorithms were used.

  16. Evaluation of dose calculation algorithms using the treatment planning system Xi O with tissue heterogeneity correction turned on; Validacao dos algoritmos de calculo de dose do sistema de planejamento Xi O considerando as correcoes para heterogeneidade dos tecidos

    Fairbanks, Leandro R.; Barbi, Gustavo L.; Silva, Wiliam T.; Reis, Eduardo G.F.; Borges, Leandro F.; Bertucci, Edenyse C.; Maciel, Marina F.; Amaral, Leonardo L., E-mail: lefairbanks@yahoo.com.b [Universidade de Sao Paulo (HCRP/USP), Ribeirao Preto, SP (Brazil). Hospital das Clinicas. Servico de Radioterapia

    2011-07-01

    Since the cross-section for various radiation interactions is dependent upon tissue material, the presence of heterogeneities affects the final dose delivered. This paper aims to analyze how different treatment planning algorithms (Fast Fourier Transform, Convolution, Superposition, Fast Superposition and Clarkson) work when heterogeneity corrections are used. To that end, a farmer-type ionization chamber was positioned reproducibly (during the time of CT as well as irradiation) inside several phantoms made of aluminum, bone, cork and solid water slabs. The percent difference between the dose measured and calculated by the various algorithms was less than 5%.The convolution method shows better results for high density materials (difference {approx}1 %), whereas the Superposition algorithm is more accurate for low densities (around 1,1%). (author)

  17. Evaluation of dose calculation algorithms using the treatment planning system XiO with tissue heterogeneity correction turned on; Validacao dos algoritmos de calculo de dose do sistema de planejamento XiO considerando as correcoes para heterogeneidade dos tecidos

    Fairbanks, L.R.; Barbi, G.L.; Silva, W.T. da; Reis, E.G.F. dos; Borges, L.F.; Bertucci, E.C.; Maciel, M.F.; Amaral, L.L. do, E-mail: lefairbanks@yahoo.com.b [Universidade de Sao Paulo (USP), Ribeirao Preto, SP (Brazil). Hospital das Clinicas. Servico de Radioterapia

    2010-07-01

    Since the cross-section for various radiation interactions is dependent upon tissue material, the presence of heterogeneities affects the final dose delivered. This paper aims to analyze how different treatment planning algorithms (Fast Fourier Transform, Convolution, Superposition, Fast Superposition and Clarkson) work when heterogeneity corrections are used. To that end, a farmer-type ionization chamber was positioned reproducibly (during the time of CT as well as irradiation) inside several phantoms made of aluminum, bone, cork and solid water slabs. The percent difference between the dose measured and calculated by the various algorithms was less than 5%; This is in accordance with the recommendation of several references.The convolution method shows better results for high density materials (difference {approx}1 %), whereas the Superposition algorithm is more accurate for low densities (around 1,1%).

  18. The Effect of Aberrations and Scatter on Image Resolution Assessed by Adaptive Optics Retinal Section Imaging

    Wanek, Justin; Mori, Marek; Shahidi, Mahnaz

    2007-01-01

    The effect of increased high order wavefront aberrations on image resolution was investigated and the performance of adaptive optics (AO) for correcting wavefront error in the presence of increased light scatter was assessed in a model eye. An AO section imaging system provided an oblique view of a simulated model eye retina and incorporated a wavefront sensor and deformable mirror for measurement and compensation of wavefront aberrations. Image resolution was quantified by the width of a Lor...

  19. Study on the design and Zernike aberrations of a segmented mirror telescope

    Jiang Zhen-Yu; Li Lin; Huang Yi-Fan

    2009-01-01

    The segmented mirror telescope is widely used. The aberrations of segmented mirror systems are different from single mirror systems. This paper uses the Fourier optics theory to analyse the Zernike aberrations of segmented mirror systems. It concludes that the Zernike aberrations of segmented mirror systems obey the linearity theorem. The design of a segmented space telescope and segmented schemes are discussed, and its optical model is constructed. The computer simulation experiment is performed with this optical model to verify the suppositions. The experimental results confirm the correctness of the model.

  20. Baseline chromosome aberrations in children

    Merlo, D.F.; Ceppi, M.; Stagi, E.; Bocchini, V.; Šrám, Radim; Rössner st., Pavel

    2007-01-01

    Roč. 172, - (2007), s. 60-67. ISSN 0378-4274 Grant ostatní: EU(EU) 2002-02198; EU(EU) 2005-016320 Institutional research plan: CEZ:AV0Z50390512 Source of funding: R - rámcový projekt EK ; R - rámcový projekt EK Keywords : chromosome aberrations * children * molecular epidemiology Subject RIV: DN - Health Impact of the Environment Quality Impact factor: 2.826, year: 2007

  1. Aberrant methylation patterns in cancer

    Hudler, Petra; Videtič, Alja

    2016-01-01

    Epigenetic mechanisms, such as DNA methylation, DNA hydroxymethylation, post-translational modifications (PTMs) of histone proteins affecting nucleosome remodelling, and regulation by small and large non-coding RNAs (ncRNAs) work in concert with cis and trans acting elements to drive appropriate gene expression. Advances in detection methods and development of dedicated platforms and methylation arrays resulted in an explo - sion of information on aberrantly methylated sequences linking devia...

  2. The Effects of Observation of Learn Units during Reinforcement and Correction Conditions on the Rate of Learning Math Algorithms by Fifth Grade Students

    Neu, Jessica Adele

    2013-01-01

    I conducted two studies on the comparative effects of the observation of learn units during (a) reinforcement or (b) correction conditions on the acquisition of math objectives. The dependent variables were the within-session cumulative numbers of correct responses emitted during observational sessions. The independent variables were the…

  3. Frequency and distribution studies of asymmetrical versus symmetrical chromosome aberrations

    Two aspects of the relationship between Asymmetrical (A) and Symmetrical (S) radiation-induced chromosomal aberrations are considered in this paper. (1) Are A and S truly alternative modes of lesion interaction. Relative frequencies for chromatid-type and chromosome-type are examined, and new lymphocyte data using banding is used to look at this, and also for parallelism in chromosome participation of the two forms for various aberration categories. All the tests applied suggest that A and S are alternative interaction modes. (2) The long-term survival characteristics of A and S are discussed, and the differences in expected frequencies of derived S per surviving cell from chromosome-type and chromatid-types are stressed. Since many in vivo tissues have varying mixtures of potential chromatid and chromosome aberration-bearing target cells, ultimate cell survival and derived S frequencies may differ between tissues for the same absorbed dose. An Appendix gives Relative Corrected Lengths (RCL) for chromosomes of the human karyotype which should be used when testing the various exchange aberration categories for random chromosome participation. (orig.)

  4. Description of new vacuum chamber correction concept

    Danby, G.T.; Jackson, J.W.

    1989-01-01

    For rapid cycled accelerators eddy currents induced in vacuum chambers (VC) are typically the dominant source of systematic and random field aberrations. Complex thin wall VC are expensive and delicate where bakeout is required, as in the AGS Booster under construction. Thick wall VC are rugged and economical but produce large eddy currents. A ''Self-Correction'' concept has been developed and tested which corrects automatically by transformer action, even for variable /dot B/ cycles. Coils attached to the outside of the VC cancel eddy current aberrations over the entire ''good field'' aperture. The (inexpensive) correction coils follow the local contour of the VC, so large transverse VC movements are tolerated; both the aberrations and their corrections have the same displaced coordinates. Experimental results are presented for Booster correction coil designs demonstrating both self-correction and excitation by a separate power supply. Analytic results applicable to the Booster and other fast cycling accelerators are discussed. The eddy current field aberrations induced in a pre-production full size vacuum chamber inserted in an AGS Booster dipole have been successfully eliminated by the ''self correction'' coils attached to its surface. The voltage induced in a two-turns per pole ''back leg'' winding is sufficient to supply the necessary current through the correction winding. A nichrome wire attached in series provides adjustable resistance for current control. 2 refs., 7 figs.

  5. Chromosomal aberrations and bone marrow toxicity.

    Heddle, J A; Salamone, M F

    1981-01-01

    The importance of chromosomal aberrations as a proximate cause of bone marrow toxicity is discussed. Since chemicals that can cause nondisjunction are rare, numerical aberrations (aneuploidy, polyploidy) are not ordinarily important. Many structural aberrations, however, can lead directly to cell death and so are proximate causes of toxicity when they occur. The micronucleus test which utilizes the polychromatic erythrocyte is capable of detecting agents (clastogens) that can cause such struc...

  6. Chromosomal aberrations in ore miners of Slovakia

    A pilot study was performed in which the incidence of chromosomal aberrations in lymphocytes of miners in ore mines located in Central Slovakia was monitored and related to lifetime underground radon exposure and to lifetime smoking. The conclusions drawn from the results of the study were as follows: the counts of chromosomal aberrations in lymphocytes of miners were significantly higher than in an age matched control group of white-collar staff; the higher counts of chromosomal aberrations could be ascribed to underground exposure of miners and to smoking; a dependence of chromosomal aberration counts on the exposure to radon could not be assessed. (A.K.)

  7. Calibration of quasi-static aberrations in exoplanet direct-imaging instruments with a Zernike phase-mask sensor. II. Concept validation with ZELDA on VLT/SPHERE

    N'Diaye, M.; Vigan, A.; Dohlen, K.; Sauvage, J.-F.; Caillat, A.; Costille, A.; Girard, J. H. V.; Beuzit, J.-L.; Fusco, T.; Blanchard, P.; Le Merrer, J.; Le Mignant, D.; Madec, F.; Moreaux, G.; Mouillet, D.; Puget, P.; Zins, G.

    2016-08-01

    Warm or massive gas giant planets, brown dwarfs, and debris disks around nearby stars are now routinely observed by dedicated high-contrast imaging instruments that are mounted on large, ground-based observatories. These facilities include extreme adaptive optics (ExAO) and state-of-the-art coronagraphy to achieve unprecedented sensitivities for exoplanet detection and their spectral characterization. However, low spatial frequency differential aberrations between the ExAO sensing path and the science path represent critical limitations for the detection of giant planets with a contrast lower than a few 10-6 at very small separations (reintegration in Chile. Using the internal light source of the instrument, we first performed measurements in the presence of Zernike or Fourier modes introduced with the deformable mirror. Our experimental results are consistent with the results in simulations, confirming the ability of our sensor to measure small aberrations (<50 nm rms) with nanometric accuracy. Following these results, we corrected the long-lived non-common path aberrations in SPHERE based on ZELDA measurements and estimated a contrast gain of 10 in the coronagraphic image at 0.2'', reaching the raw contrast limit set by the coronagraph in the instrument. In addition to this encouraging result, the simplicity of the design and its phase reconstruction algorithm makes ZELDA an excellent candidate for the online measurements of quasi-static aberrations during the observations. The implementation of a ZELDA-based sensing path on the current and future facilities (ELTs, future space missions) could facilitate the observation of cold gaseous or massive rocky planets around nearby stars.

  8. Phase Aberrations in Diffraction Microscopy

    Marchesini, S.; Chapman, H. N.; Barty, A.; Cui, C.; Howells, M. R.; Spence, J. C. H.; Weierstall, U.; Minor, A.M.

    2005-01-01

    In coherent X-ray diffraction microscopy the diffraction pattern generated by a sample illuminated with coherent x-rays is recorded, and a computer algorithm recovers the unmeasured phases to synthesize an image. By avoiding the use of a lens the resolution is limited, in principle, only by the largest scattering angles recorded. However, the imaging task is shifted from the experiment to the computer, and the algorithm's ability to recover meaningful images in the presence of noise and limit...

  9. Effect of methods of myopia correction on visual acuity, contrast sensitivity, and depth of focus

    Nio, YK; Jansonius, NM; Wijdh, RHJ; Beekhuis, WH; Worst, JGF; Noorby, S; Kooijman, AC

    2003-01-01

    Purpose. To psychophysically measure spherical and irregular aberrations in patients with various types of myopia correction. Setting: Laboratory of Experimental Ophthalmology, University of Groningen, Groningen, The Netherlands. Methods: Three groups of patients with low myopia correction (spectacl

  10. Calculation of aberration coefficients by ray tracing

    Oral, Martin; Lencová, Bohumila

    2009-01-01

    Roč. 109, č. 11 (2009), s. 1365-1373. ISSN 0304-3991 R&D Projects: GA AV ČR IAA100650805 Institutional research plan: CEZ:AV0Z20650511 Keywords : Aberrations * Aberration coefficients * Ray tracing * Regression * Fitting Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering Impact factor: 2.067, year: 2009

  11. Measuring chromatic aberrations in imaging systems using plasmonic nano-particles

    Gennaro, Sylvain D; Maier, Stefan A; Oulton, Rupert F

    2015-01-01

    Chromatic aberration in optical systems arises from the wavelength dependence of a glass's refractive index. Polychromatic rays incident upon an optical surface are refracted at slightly different angles and in traversing an optical system follow distinct paths creating images displaced according to color. Although arising from dispersion, it manifests as a spatial distortion correctable only with compound lenses with multiple glasses and accumulates in complicated imaging systems. While chromatic aberration is measured with interferometry, simple methods are attractive for their ease of use and low cost. In this letter we retrieve the longitudinal chromatic focal shift of high numerical aperture (NA) microscope objectives from the extinction spectra of metallic nanoparticles within the focal plane. The method is accurate for high NA objectives with apochromatic correction, and enables rapid assessment of the chromatic aberration of any complete microscopy systems, since it is straightforward to implement

  12. Nodal aberration theory applied to freeform surfaces

    Fuerschbach, Kyle; Rolland, Jannick P.; Thompson, Kevin P.

    2014-12-01

    When new three-dimensional packages are developed for imaging optical systems, the rotational symmetry of the optical system is often broken, changing its imaging behavior and making the optical performance worse. A method to restore the performance is to use freeform optical surfaces that compensate directly the aberrations introduced from tilting and decentering the optical surfaces. In order to effectively optimize the shape of a freeform surface to restore optical functionality, it is helpful to understand the aberration effect the surface may induce. Using nodal aberration theory the aberration fields induced by a freeform surface in an optical system are explored. These theoretical predications are experimentally validated with the design and implementation of an aberration generating telescope.

  13. Aberration compensation in charged particle projection lithography

    Projection systems offer the opportunity to increase the throughput for charged particle lithography, because such systems image a large area of a mask directly on to a wafer as a single shot. Shots have to be imaged over a certain range of off-axis distances at the wafer to increase the writing speed, because shot sizes are limited to about 0.25x0.25 mm2 due to aberrations. In a projection system with only lenses, however, the aberrations for off-axis shots are still very large, and some aberration compensation elements need to be introduced. In this paper, three aberration compensation elements (deflectors, stigmators and dynamic focus lenses) are first discussed, a suite of newly developed software, called PROJECTION, based on this principle and our unified aberration theory is then described, and an illustrative example computed with the software is finally given

  14. The research of calibration method on lens-tilt displacement transmission-type system based on the aberration bounded model

    Xu, Chun-mei; Liu, Bing-qi; Li, Li; Huang, Fu-yu; Zhang, Chu

    2015-10-01

    As the developing appliance range of high-resolution optical design, the requirement on the aberration of system design is becoming higher and higher, but the installation and adjustment error of optical components is an important element which influences the aberration. The decentration and tilt of optical components result not only the image lateral displacement but also the aberration enlargement of the optical system, the research on image quality of plane symmetric optical system is becoming more and more popular. The Gaussian correction methods on lens decentration already exist, but it is short of theoretical research to guide the correction on the lens tilt, which leads to the effect of image lateral displacement. This thesis analyzes theoretically a mathematical model between the lens tilt degree and wave aberration, and deduces mathematically the correction equation of zero aberration increment under the aberration constraint condition. Taking an example of some type optical sight, the ZEMAX simulation is carried out to validate this method, and the results show that: This method can effectively guide the correction of lens tilt, and reduce the influence of lens position change on the optical imaging quality. It has important practical significance to guide high-resolution optical design.

  15. Higher-Order Aberrations in Myopic Eyes

    Farid Karimian

    2010-01-01

    Full Text Available Purpose: To evaluate the correlation between refractive error and higher-order aberrations (HOAs in patients with myopic astigmatism. Methods: HOAs were measured using the Zywave II aberrometer over a 6 mm pupil. Correlations between HOAs and myopia, astigmatism, and age were analyzed. Results: One hundred and twenty-six eyes of 63 subjects with mean age of 26.4±5.9 years were studied. Mean spherical equivalent refractive error and refractive astigmatism were -4.94±1.63 D and 0.96±1.06 D, respectively. The most common higher-order aberration was primary horizontal trefoil with mean value of 0.069±0.152 μm followed by spherical aberration (-0.064±0.130 μm and primary vertical coma (-0.038±0.148 μm. As the order of aberration increased from third to fifth, its contribution to total HOA decreased: 53.9% for third order, 31.9% for fourth order, and 14.2% for fifth order aberrations. Significant correlations were observed between spherical equivalent refractive error and primary horizontal coma (R=0.231, P=0.022, and root mean square (RMS of spherical aberration (R=0.213, P=0.031; between astigmatism and RMS of total HOA (R=0.251, P=0.032, RMS of fourth order aberration (R=0.35, P<0.001, and primary horizontal coma (R=0.314, P=0.004. Spherical aberration (R=0.214, P=0.034 and secondary vertical coma (R=0.203, P=0.031 significantly increased with age. Conclusion: Primary horizontal trefoil, spherical aberration and primary vertical coma are the predominant higher-order aberrations in eyes with myopic astigmatism.

  16. New scene-based nonuniformity correction algorithm based on Gaussian mixture model%基于混合高斯模型的红外图像自适应校正算法

    贾俊涛

    2014-01-01

    针对传统时域高通滤波校正算法存在的鬼影问题,提出一种新的基于混合高斯模型的红外图像自适应校正算法。新算法利用混合高斯模型对场景进行建模,只有在像元输出值满足一定条件的时候,才将其更新到校正系数中,实现有选择性地更新校正系数。通过一组仿真和真实的红外图像序列评价算法的性能,仿真图像采用峰值信噪比指标进行定量评价,新算法比传统时域高通滤波校正算法的峰值信噪比提高了约9 dB。真实图像采用主观的定性评价,传统算法校正结果中存在着明显的鬼影,而新算法校正结果中不存在鬼影。%A new self-adaptive calibration algorithm for infrared images based on Gaussian mixed model (GMM ) was put forward according to traditional temporal high-pass filter (THPF) . GMM is applied in the new algorithm for background modeling ,and only the pixels whose out-put values satisfy certain conditions can be updated to the correction coefficient ,and the back-ground is updated selectively so as to avoid the influence of the foreground target on the update of the background .The performance of the proposed algorithm was evaluated through infrared image sequences with simulated and real fixed-pattern noise ,and the simulated sequences quan-titative evaluation was carried out by using the peak signal noise ratio (PSNR) .Results show that the PSNR of the new algorithm increases by about 9 dB compared with the THPF .The subjective qualitative evaluation was adopted for real images ,the correction results in the tradi-tional method show obvious ghosting artifact w hile the results of the new algorithm are in the absence of ghosting artifact .

  17. Chromosome painting analysis of radiation-induced aberrant cell clones in the mouse

    In a study of the persistence of radiation-induced translocations over the life span of the mouse, we observed a number of clonal cells in peripheral blood lymphocytes. The presence of clones caused the mean frequency of aberrations at various time points to be elevated which interfered with biodosimetry. For this reason, we have corrected our data for the presence of clones. Mice were given an acute dose of 0, 1, 2, 3 or 4 Gy 137Cs at 8 weeks of age. Aberrations were measured by painting chromosomes 2 and 8 and cells were examined for clones at 3 months and every 3 months thereafter until 21 months. Clones were identified by comparing the color photographic slides of all abnormal cells from each animal. Determination of clonality was made on the basis of similar breakpoint locations or the presence of other identifying characteristics such as unusual aberrations. To correct the frequency of translocations for the presence of clones, each clone, regardless of how many cells it contained, was counted only once. This reflects the original aberration frequency since each clone originated as only one cell. Among mice exposed to 4 Gy, the mean frequencies of aberrant cell clones ranged from 3-29% of the total number of metaphase cells scored with the highest frequency being 1 year post exposure. 32-70% of reciprocal and 19-92% of non-reciprocal translocations were clonal. A dose response relationship for clones was evident until 21 months when the unexposed animals exhibited a mean frequency of aberrant cell clones >10% of the total number of cells scored. Almost 75% of reciprocal and 95% of non-reciprocal translocations in these unexposed control animals were of clonal origin. Correction for clonal expansion greatly reduced the means and their standard errors at most time points where clonal expansion was prevalent. The biodosimetry was much improved suggesting that correction is beneficial in long-term studies

  18. Comparing the first- and second-order theories of relativistic dissipative fluid dynamics using the 1+1 dimensional relativistic flux corrected transport algorithm

    Focusing on the numerical aspects and accuracy we study a class of bulk viscosity driven expansion scenarios using the relativistic Navier-Stokes and truncated Israel-Stewart form of the equations of relativistic dissipative fluids in 1+1 dimensions. The numerical calculations of conservation and transport equations are performed using the numerical framework of flux corrected transport. We show that the results of the Israel-Stewart causal fluid dynamics are numerically much more stable and smoother than the results of the standard relativistic Navier-Stokes equations. (orig.)

  19. Removal of ghost images by using tilted element optical systems with polynomial surfaces for aberration compensation

    Rogers, Jeremy D.; Tkaczyk, Tomasz S.; Descour, Michael R.; Kärkkäinen, Ari H.; Richards-Kortum, Rebecca

    2006-02-01

    A novel solution to problematic ghost images is implemented by using tilted lens elements with polynomial surfaces. Tilting the lens surfaces sends reflections out of the imaging path. The nonrotationally symmetric polynomial surfaces correct aberrations caused by tilts. The complex lens surfaces are fabricated by using gray-scale lithographic patterning of hybrid solgel glass.

  20. Rectifier of aberrant mRNA splicing recovers tRNA modification in familial dysautonomia

    Yoshida, Mayumi; Kataoka, Naoyuki; Miyauchi, Kenjyo; Ohe, Kenji; Iida, Kei; Yoshida, Suguru; Nojima, Takayuki; Okuno, Yukiko; Onogi, Hiroshi; Usui, Tomomi; Takeuchi, Akihide; Hosoya, Takamitsu; Suzuki, Tsutomu; Hagiwara, Masatoshi

    2015-01-01

    Familial dysautonomia (FD) is caused by missplicing of the IκB kinase complex-associated protein (IKAP) gene, which results in the skipping of exon 20, especially in neurons. FD would be treatable if exon 20 inclusion were increased correctly to reestablish correct splicing. Here, we have established a dual-color splicing reporter that recapitulates FD-type splicing. By using this reporter, we have identified a small chemical compound, named rectifier of aberrant splicing (RECTAS), that recti...

  1. Aberration-Coreected Electron Microscopy at Brookhaven National Laboratory

    Zhu,Y.; Wall, J.

    2008-04-01

    The last decade witnessed the rapid development and implementation of aberration correction in electron optics, realizing a more-than-70-year-old dream of aberration-free electron microscopy with a spatial resolution below one angstrom [1-9]. With sophisticated aberration correctors, modern electron microscopes now can reveal local structural information unavailable with neutrons and x-rays, such as the local arrangement of atoms, order/disorder, electronic inhomogeneity, bonding states, spin configuration, quantum confinement, and symmetry breaking [10-17]. Aberration correction through multipole-based correctors, as well as the associated improved stability in accelerating voltage, lens supplies, and goniometers in electron microscopes now enables medium-voltage (200-300kV) microscopes to achieve image resolution at or below 0.1nm. Aberration correction not only improves the instrument's spatial resolution but, equally importantly, allows larger objective lens pole-piece gaps to be employed thus realizing the potential of the instrument as a nanoscale property-measurement tool. That is, while retaining high spatial resolution, we can use various sample stages to observe the materials response under various temperature, electric- and magnetic- fields, and atmospheric environments. Such capabilities afford tremendous opportunities to tackle challenging science and technology issues in physics, chemistry, materials science, and biology. The research goal of the electron microscopy group at the Dept. of Condensed Matter Physics and Materials Science and the Center for Functional Nanomaterials, as well as the Institute for Advanced Electron Microscopy, Brookhaven National Laboratory (BNL), is to elucidate the microscopic origin of the physical- and chemical-behavior of materials, and the role of individual, or groups of atoms, especially in their native functional environments. We plan to accomplish this by developing and implementing various quantitative

  2. 冗余余数系统低复杂度快速纠错算法设计%Low-complexity Error Correction Algorithms for Redundant Residue Number Systems

    2015-01-01

    Redundant Residue Number System (RRNS) is widely used in communication systems for WLAN (Wireless LAN) and CDMA (Code Division Multiple Access) etc. due to its strong ability to enhance robustness of information in parallel processing environments. Error detection and correction of RRNS is an important guarantee for information reliability in communication systems. The overflow detection theorem, the unique theorem, and the searching theorem are proposed and proved in the paper based on properties of residue classes in finite rings. With the theorems, a single-error-correction algorithm using modular operations with reduced complexityO(k/r)is proposed. The uniqueness test algorithm is proposed. Furthermore, for any general types of errors, the searching multiple-error-correction algorithm is proposed. The computational complexity of the searching multiple-error- correction algorithm is reduced from polynomial order to logarithmic order according to the analysis, and the method can reach the extreme correction capability efficiently with only comparison operations instead of complex modular arithmetic.%余数系统由于具有增强传输信息在并行系统中鲁棒性的优势,已被广泛应用在无线局域网(WLAN)以及码分多址通信技术(CDMA)等领域。而余数系统中的纠错检错是保证传输数据可靠性和高效性的关键问题。该文根据有限环上剩余类的性质提出溢出判定定理,不重复判断定理和唯一性区间搜索定理,并在此基础上进一步提出采用模运算代替传统中国剩余定理进行快速恢复的单错误纠错算法,将复杂度降低为O (k/r );提出不重复判定纠错算法;并对于一般错误情形,设计通过比较算子实现的搜索纠错算法。其中搜索纠错算法能直接实现系统最大纠错能力,且避免依靠复杂模运算算子实现,系统吞吐率得以提高;与传统算法相比,计算复杂度由多项式级降低至对数级。

  3. Chromosome aberration assays in Allium

    Grant, W.F.

    1982-01-01

    The common onion (Allium cepa) is an excellent plant for the assay of chromosome aberrations after chemical treatment. Other species of Allium (A. cepa var. proliferum, A. carinatum, A. fistulosum and A. sativum) have also been used but to a much lesser extent. Protocols have been given for using root tips from either bulbs or seeds of Allium cepa to study the cytological end-points, such as chromosome breaks and exchanges, which follow the testing of chemicals in somatic cells. It is considered that both mitotic and meiotic end-points should be used to a greater extent in assaying the cytogenetic effects of a chemical. From a literature survey, 148 chemicals are tabulated that have been assayed in 164 Allium tests for their clastogenic effect. Of the 164 assays which have been carried out, 75 are reported as giving a positive reaction, 49 positive and with a dose response, 1 positive and temperature-related, 9 borderline positive, and 30 negative; 76% of the chemicals gave a definite positive response. It is proposed that the Allium test be included among those tests routinely used for assessing chromosomal damage induced by chemicals.

  4. Compensation of aberrations of deflected electron probe by means of dynamical focusing with stigmator

    Electron beam passing through a deflecting field is in general, subjected to aberrations such as distortion, astigmatism and coma in accordance with the deflecting angle. Accordingly the aberration defect of deflected beam is the most serious limiting factor in the performances of micromachining, microminiaturization and high resolution scanning electron microscopes. From many investigators' results, it is obvious that three important compensation methods to aberrations exist in principle, i.e., double deflection system, dynamical focusing, and the dynamical correction using a stigmator. In this paper, based on the aberration formula derived from the eikonal or the path method, the practical data of the aberration constants of deflected electron beam for the sequential deflection system with parallel plates are calculated, and using its result, the distorted spot patterns of an electron probe deflected in two-dimensional directions for various defocusings are graphically displayed by the aid of a computer. Further, by means of the dynamical focusing with a stigmator, the conditions to completely compensate the second order astigmatic aberration are derived, and spot patterns and the electron density distributions within the spots in the case when the compensating conditions are satisfied are also graphically displayed. (Wakatsuki, Y.)

  5. Effect of aberrations in vortex spatial filtering

    Sharma, Manoj Kumar; Joseph, Joby; Senthilkumaran, P.

    2012-11-01

    Edge enhancement is a very important operation in image processing and a spiral phase plate can be used as a radial Hilbert mask for isotropic edge enhancement. In this paper we analyze the effect of various Seidel aberrations on the performance of radial Hilbert mask or the vortex phase mask. The aberrated vortex phase mask is implemented optically with the help of a high resolution, spatial light modulator (SLM). It has also been shown that out of various aberrations astigmatism can introduce anisotropy in the Hilbert mask which causes selective edge enhancement.

  6. Explaining algorithms using metaphors

    Forišek, Michal

    2013-01-01

    There is a significant difference between designing a new algorithm, proving its correctness, and teaching it to an audience. When teaching algorithms, the teacher's main goal should be to convey the underlying ideas and to help the students form correct mental models related to the algorithm. This process can often be facilitated by using suitable metaphors. This work provides a set of novel metaphors identified and developed as suitable tools for teaching many of the 'classic textbook' algorithms taught in undergraduate courses worldwide. Each chapter provides exercises and didactic notes fo

  7. Polarization Aberrations in Astronomical Telescopes: The Point Spread Function

    Breckinridge, James B.; Lam, Wai Sze T.; Chipman, Russell A.

    2015-05-01

    and coronagraph applications. (4) Part of the aberration is a polarization-dependent astigmatism, with a magnitude of 22 milliwaves, which enlarges the PSF image. (5) The orthogonally polarized components of unpolarized sources contain different wavefront aberrations, which differ by approximately 32 milliwaves. This implies that a wavefront correction system cannot optimally correct the aberrations for all polarizations simultaneously. (6) The polarization aberrations couple small parts of each polarization component of the light (~10-4) into the orthogonal polarization where these components cause highly distorted secondary, or "ghost" PSF images. (7) The radius of the spatial extent of the 90% encircled energy of these two ghost PSF image is twice as large as the radius of the Airy diffraction pattern. Coronagraphs for terrestrial exoplanet science are expected to image objects 10-10, or 6 orders of magnitude less than the intensity of the instrument-induced "ghost" PSF image, which will interfere with exoplanet measurements. A polarization aberration expansion which approximates the Jones pupil of the example telescope in six polarization terms is presented in the appendix. Individual terms can be associated with particular polarization defects. The dependence of these terms on angles of incidence, numerical aperture, and the Taylor series representation of the Fresnel equations lead to algebraic relations between these parameters and the scaling of the polarization aberrations. These "design rules" applicable to the example telescope are collected in § 5. Currently, exoplanet coronagraph masks are designed and optimized for scalar diffraction in optical systems. Radiation from the "ghost" PSF image leaks around currently designed image plane masks. Here, we show a vector-wave or polarization optimization is recommended. These effects follow from a natural description of the optical system in terms of the Jones matrices associated with each ray path of interest

  8. Spherical aberration, accommodation and myopia

    Tarrant, Janice

    2010-01-01

    Myopia is a condition in which the eye grows too long to match its optical focal length and represents a failure in both structure and function. Because of the potential risks of vision loss associated with high myopia, and also with corrective treatments such as refractive surgery and occasionally also with contact lenses, myopia should not be considered a benign condition. The hypothesis that hyperopic defocus from under-accommodation during near work is the driving stimulus in the progress...

  9. Aberration features in directional dark matter detection

    Bozorgnia, Nassim; Gondolo, Paolo

    2012-01-01

    The motion of the Earth around the Sun causes an annual change in the magnitude and direction of the arrival velocity of dark matter particles on Earth, in a way analogous to aberration of stellar light. In directional detectors, aberration of weakly interacting massive particles (WIMPs) modulates the pattern of nuclear recoil directions in a way that depends on the orbital velocity of the Earth and the local galactic distribution of WIMP velocities. Knowing the former, WIMP aberration can give information on the latter, besides being a curious way of confirming the revolution of the Earth and the extraterrestrial provenance of WIMPs. While observing the full aberration pattern requires extremely large exposures, we claim that the annual variation of the mean recoil direction or of the event counts over specific solid angles may be detectable with moderately large exposures. For example, integrated counts over galactic hemispheres separated by planes perpendicular to Earth's orbit would modulate annually, res...

  10. Aberrant right hepatic artery; A case report

    We present a rare case of aberrant hepatic artery in a 40-year-old male with a history of chronic cholecystitis. During laparoscopic surgery, the artery found to pass anterior to the body the gallbladder and bifurcating anterior to the gallbladder body. The surgery was un eventful. We present this anomaly of the rare condition of aberrant right hepatic artery which should be in mind during laparoscopic cholecystectomy, because inadverant injury could lead to massive bleeding and increase co morbidities. (author)

  11. Color corrected Fresnel lens for solar concentration

    A new linear convex Fresnel lens with its groove side down is described. The design philosophy is similar to the highly concentrating two focal Fresnel lens but including a correction for chromatic aberration. A solar concentration ratio as high as 80 is achieved. For wide acceptance angles the concentration nears the theoretical maximum. (author)

  12. An algorithm for temperature correcting substrate moisture measurements: aligning substrate moisture responses with environmental drivers in polytunnel-grown strawberry plants

    Goodchild, Martin; Janes, Stuart; Jenkins, Malcolm; Nicholl, Chris; Kühn, Karl

    2015-04-01

    The aim of this work is to assess the use of temperature corrected substrate moisture data to improve the relationship between environmental drivers and the measurement of substrate moisture content in high porosity soil-free growing environments such as coir. Substrate moisture sensor data collected from strawberry plants grown in coir bags installed in a table-top system under a polytunnel illustrates the impact of temperature on capacitance-based moisture measurements. Substrate moisture measurements made in our coir arrangement possess the negative temperature coefficient of the permittivity of water where diurnal changes in moisture content oppose those of substrate temperature. The diurnal substrate temperature variation was seen to range from 7° C to 25° C resulting in a clearly observable temperature effect in substrate moisture content measurements during the 23 day test period. In the laboratory we measured the ML3 soil moisture sensor (ThetaProbe) response to temperature in Air, dry glass beads and water saturated glass beads and used a three-phase alpha (α) mixing model, also known as the Complex Refractive Index Model (CRIM), to derive the permittivity temperature coefficients for glass and water. We derived the α value and estimated the temperature coefficient for water - for sensors operating at 100MHz. Both results are good agreement with published data. By applying the CRIM equation with the temperature coefficients of glass and water the moisture temperature coefficient of saturated glass beads has been reduced by more than an order of magnitude to a moisture temperature coefficient of

  13. Effect of a novel motion correction algorithm (SSF) on the image quality of coronary CTA with intermediate heart rates: Segment-based and vessel-based analyses

    Li, Qianwen, E-mail: qianwen18@126.com; Li, Pengyu, E-mail: lipyu818@gmail.com; Su, Zhuangzhi, E-mail: suzhuangzhi@xwh.ccmu.edu.cn; Yao, Xinyu, E-mail: 314985151@qq.com; Wang, Yan, E-mail: wy19851121@126.com; Wang, Chen, E-mail: fskwangchen@gmail.com; Du, Xiangying, E-mail: duxying_xw@163.com; Li, Kuncheng, E-mail: kuncheng.li@gmail.com

    2014-11-15

    -segment analysis, IQS was improved in most segments (9/14). Conclusion: The SSF algorithm can provide acceptable diagnostic image quality in coronary CTA for patients with intermediate HR.

  14. Effect of a novel motion correction algorithm (SSF) on the image quality of coronary CTA with intermediate heart rates: Segment-based and vessel-based analyses

    -segment analysis, IQS was improved in most segments (9/14). Conclusion: The SSF algorithm can provide acceptable diagnostic image quality in coronary CTA for patients with intermediate HR

  15. Automatic Compensation of Total Phase Aberrations in Digital Holographic Biological Imaging

    Digital holographic microscopy has been a powerful metrological technique for phase-contrast imaging. However inherent phase aberrations always exist and degrade the quality of the phase-contrast images. A surface fitting method based on an improved mathematic model is proposed, which can be used to remove the phase aberrations without any pre-knowledge of the setup or manual operation. The improved mathematic model includes not only the usual terms but also the cross terms and the high order terms to describe the phase aberrations with high accuracy. Meanwhile, a non-iterative algorithm is used to solve the parametersand thus less computational load is imposed. The proposed method is applied to the live imaging of cells. The experimental results verify its validity. (fundamental areas of phenomenology(including applications))

  16. Measurement of the atmospheric primary aberrations by a 4-aperture differential image motion monitor

    Shomali, Ramin; Nasiri, Sadollah; Darudi, Ahmad

    2011-05-01

    The present paper investigates and discusses the ability of the Hartmann test with a 4-aperture differential image motion monitor (DIMM) to measure the atmospheric primary aberrations which, in turn, can be used for the calculation of the atmospheric coherence time. Through performing numerical simulations, we show that the 4-aperture DIMM is able to measure the defocus and astigmatism terms correctly whereas its results are not reliable for the coma. The most important limitations in the measurement of the primary aberrations by the 4-aperture DIMM are the centroid displacements of the spots which are caused by the higher order aberrations. This effect is negligible in the calculation of the defocus and astigmatisms, whereas it cannot be ignored in the calculation of the coma.

  17. Measurement of the atmospheric primary aberrations by a 4-aperture differential image motion monitor

    The present paper investigates and discusses the ability of the Hartmann test with a 4-aperture differential image motion monitor (DIMM) to measure the atmospheric primary aberrations which, in turn, can be used for the calculation of the atmospheric coherence time. Through performing numerical simulations, we show that the 4-aperture DIMM is able to measure the defocus and astigmatism terms correctly whereas its results are not reliable for the coma. The most important limitations in the measurement of the primary aberrations by the 4-aperture DIMM are the centroid displacements of the spots which are caused by the higher order aberrations. This effect is negligible in the calculation of the defocus and astigmatisms, whereas it cannot be ignored in the calculation of the coma

  18. A general algorithm for distributing information in a graph

    Aji, Srinivas M.; McEliece, Robert J.

    1997-01-01

    We present a general “message-passing” algorithm for distributing information in a graph. This algorithm may help us to understand the approximate correctness of both the Gallager-Tanner-Wiberg algorithm, and the turbo-decoding algorithm.

  19. Combining Chromosomal Arm Status and Significantly Aberrant Genomic Locations Reveals New Cancer Subtypes

    Tal Shay

    2009-01-01

    Full Text Available Many types of tumors exhibit characteristic chromosomal losses or gains, as well as local amplifications and deletions. Within any given tumor type, sample specific amplifications and deletions are also observed. Typically, a region that is aberrant in more tumors, or whose copy number change is stronger, would be considered as a more promising candidate to be biologically relevant to cancer. We sought for an intuitive method to define such aberrations and prioritize them. We define V, the “volume” associated with an aberration, as the product of three factors: (a fraction of patients with the aberration, (b the aberration’s length and (c its amplitude. Our algorithm compares the values of V derived from the real data to a null distribution obtained by permutations, and yields the statistical significance (p-value of the measured value of V. We detected genetic locations that were significantly aberrant, and combine them with chromosomal arm status (gain/loss to create a succinct fingerprint of the tumor genome. This genomic fingerprint is used to visualize the tumors, highlighting events that are co-occurring or mutually exclusive. We apply the method on three different public array CGH datasets of Medulloblastoma and Neuroblastoma, and demonstrate its ability to detect chromosomal regions that were known to be altered in the tested cancer types, as well as to suggest new genomic locations to be tested. We identified a potential new subtype of Medulloblastoma, which is analogous to Neuroblastoma type 1.

  20. Effects of residual aberrations explored on single-walled carbon nanotubes

    Biskupek, Johannes, E-mail: johannes.biskupek@uni-ulm.de [Central Facility of Electron Microscopy, Ulm University, Albert-Einstein-Allee 11, D-89081 Ulm (Germany); Hartel, Peter; Haider, Maximilian [CEOS GmbH, Englerstrasse 28, D-69126 Heidelberg (Germany); Kaiser, Ute [Central Facility of Electron Microscopy, Ulm University, Albert-Einstein-Allee 11, D-89081 Ulm (Germany)

    2012-05-15

    The effects of geometric residual aberrations such as coma B{sub 2} and two-fold astigmatism A{sub 1} on the contrast in aberration corrected high resolution transmission electron microscopy (HRTEM) images are investigated on single-walled carbon nanotubes (SWNT). The individual aberrations are adjusted and set up manually using an imaging C{sub S}-corrector. We demonstrate how coma B{sub 2} can be recognized by an experienced user directly in the image and how it blurs the contrast. Even with uncorrected (resolution limiting) spherical aberration C{sub S} the coma B{sub 2} has to be considered and must be minimized. Limits for a tolerable coma are given. The experiments are confirmed by image simulations. -- Highlights: Black-Right-Pointing-Pointer Individual effects of residual aberrations such as B{sub 2}, A{sub 1}, and C{sub S} are demonstrated. Black-Right-Pointing-Pointer Experimental HRTEM and simulated images of carbon nanotubes are compared. Black-Right-Pointing-Pointer A detection limit of 50 nm B{sub 2} in a single HRTEM image is determined.

  1. Comparison between two different methods to obtain the wavefront aberration function

    Cruz Félix, Angel S.; Ibarra, Jorge; López, Estela; Rosales, Marco A.; Tepichín, Eduardo

    2010-08-01

    The analysis and measurement of the wavefront aberration function are very important tools that allow us to evaluate the performance of any specified optical system. This technology has been adopted in visual optics for the analysis of optical aberrations in the human eye, before and after being subjected to laser refractive surgery. We have been working in the characterization and evaluation of the objective performance of human eyes that have been subjected to two different surface ablation techniques known as ASA and PASA1. However, optical aberrations in the human eye are time-dependent2 and, hence, difficult to analyze. In order to obtain a static profile from the post-operatory wavefront aberration function we applied these ablation techniques directly over hard contact lenses. In this work we show the comparison between two different methods to obtain the wavefront aberration function from a reference refractive surface, in order to generalize this method and being able to fully characterize hard contact lenses which have been subjected to different ablation techniques typically used in refractive surgery for vision correction. For the first method we used a Shack-Hartmann wavefront sensor, and in the second method we used a Mach-Zehnder type interferometer. We show the preliminary results of this characterization.

  2. Modelling the formation of polycentric chromosome aberrations

    Sachs, R.K.; Tarver, J. (California Univ., Berkeley, CA (United States). Dept. of Mathematics); Yates, B.L.; Morgan, W.F. (California Univ., San Francisco, CA (United States))

    1992-10-01

    Exchange-type chromosome aberrations produced by ionizing radiation or restriction enzymes are believed to result from pairwise interaction of DNA double-strand breaks (dsb). In addition to dicentrics, such aberrations may include higher-order polycentries (tricentries, tetracentrics, etc.). The authors have developed computer programs that calculate the probability of the various polycentrics for a given average number of pairwise interactions. Two models are used. Model I incorporates kinetic competition between restitution, complete exchanges (illegitimate recombination events), and incomplete exchanges. Model II allows unrestituted breaks even if there is no recombination. The models were applied to experimental observations of aberrations produced in G[sub 1] Chinese hamster ovary cells after electroporation with the restriction enzyme PvuII, which produces blunt-end dsb. (author).

  3. Modelling the formation of polycentric chromosome aberrations

    Exchange-type chromosome aberrations produced by ionizing radiation or restriction enzymes are believed to result from pairwise interaction of DNA double-strand breaks (dsb). In addition to dicentrics, such aberrations may include higher-order polycentries (tricentries, tetracentrics, etc.). The authors have developed computer programs that calculate the probability of the various polycentrics for a given average number of pairwise interactions. Two models are used. Model I incorporates kinetic competition between restitution, complete exchanges (illegitimate recombination events), and incomplete exchanges. Model II allows unrestituted breaks even if there is no recombination. The models were applied to experimental observations of aberrations produced in G1 Chinese hamster ovary cells after electroporation with the restriction enzyme PvuII, which produces blunt-end dsb. (author)

  4. Chromosomal aberrations induced by alpha particles

    The chromosomal aberrations produced by the ionizing radiation are commonly used when it is necessary to establish the exposure dose of an individual, it is a study that is used like complement of the traditional physical systems and its application is only in cases in that there is doubt about what indicates the conventional dosimetry. The biological dosimetry is based on the frequency of aberrations in the chromosomes of the lymphocytes of the individual in study and the dose is calculated taking like reference to the dose-response curves previously generated In vitro. A case of apparent over-exposure to alpha particles to which is practiced analysis of chromosomal aberrations to settle down if in fact there was exposure and as much as possible, to determine the presumed dose is presented. (Author)

  5. Higher order aberrations in amblyopic children and their role in refractory amblyopia

    Arnaldo Dias-Santos

    2014-12-01

    Full Text Available Objective: Some studies have hypothesized that an unfavourable higher order aberrometric profile could act as an amblyogenic mechanism and may be responsible for some amblyopic cases that are refractory to conventional treatment or cases of “idiopathic” amblyopia. This study compared the aberrometric profile in amblyopic children to that of children with normal visual development and compared the aberrometric profile in corrected amblyopic eyes and refractory amblyopic eyes with that of healthy eyes. Methods: Cross-sectional study with three groups of children – the CA group (22 eyes of 11 children with unilateral corrected amblyopia, the RA group (24 eyes of 13 children with unilateral refractory amblyopia and the C group (28 eyes of 14 children with normal visual development. Higher order aberrations were evaluated using an OPD-Scan III (NIDEK. Comparisons of the aberrometric profile were made between these groups as well as between the amblyopic and healthy eyes within the CA and RA groups. Results: Higher order aberrations with greater impact in visual quality were not significantly higher in the CA and RA groups when compared with the C group. Moreover, there were no statistically significant differences in the higher order aberrometric profile between the amblyopic and healthy eyes within the CA and RA groups. Conclusions: Contrary to lower order aberrations (e.g., myopia, hyperopia, primary astigmatism, higher order aberrations do not seem to be involved in the etiopathogenesis of amblyopia. Therefore, these are likely not the cause of most cases of refractory amblyopia.

  6. Propagation of Aberrations through Phase Induced Amplitude Apodization coronagraph

    Pueyo, Laurent; Shaklan, Stuart; 10.1364/JOSAA.28.000189

    2011-01-01

    The specification of polishing requirements for the optics in coronagraphs dedicated to exo-planet detection requires careful and accurate optical modelling. Numerical representations of the propagation of aberrations through the system as well as simulations of the broadband wavefront compensation system using multiple DMs are critical when one devises an error budget for such a class of instruments. In this communication we introduce an analytical tool that serves this purpose for Phase Induced Amplitude Apodisation (PIAA) coronagraphs. We first start by deriving the analytical form of the propagation of a harmonic ripple through a PIAA unit. Using this result we derive the chromaticity of the field at any plane in the optical train of a telescope equipped with such a coronagraph. Finally we study the chromatic response of a sequential DM wavefront actuator correcting such a corrugated field and thus quantify the requirements on the manufacturing of PIAA mirrors

  7. Aberration features in directional dark matter detection

    The motion of the Earth around the Sun causes an annual change in the magnitude and direction of the arrival velocity of dark matter particles on Earth, in a way analogous to aberration of stellar light. In directional detectors, aberration of weakly interacting massive particles (WIMPs) modulates the pattern of nuclear recoil directions in a way that depends on the orbital velocity of the Earth and the local galactic distribution of WIMP velocities. Knowing the former, WIMP aberration can give information on the latter, besides being a curious way of confirming the revolution of the Earth and the extraterrestrial provenance of WIMPs. While observing the full aberration pattern requires extremely large exposures, we claim that the annual variation of the mean recoil direction or of the event counts over specific solid angles may be detectable with moderately large exposures. For example, integrated counts over Galactic hemispheres separated by planes perpendicular to Earth's orbit would modulate annually, resulting in Galactic Hemisphere Annual Modulations (GHAM) with amplitudes larger than the usual non-directional annual modulation

  8. Prenatal hydronephrosis caused by aberrant renal vessels

    Lenz, K; Thorup, Jørgen Mogens; Rabol, A;

    1996-01-01

    With routine use of obstetric ultrasonography, fetal low-grade hydronephrosis is commonly detected, but may resolve spontaneously after birth. Two cases are presented to illustrate that in some cases such findings can express intermittent hydronephrosis caused by aberrant renal vessels. Renal det...

  9. Anti-forensics of chromatic aberration

    Mayer, Owen; Stamm, Matthew C.

    2015-03-01

    Over the past decade, a number of information forensic techniques have been developed to identify digital image manipulation and falsification. Recent research has shown, however, that an intelligent forger can use anti-forensic countermeasures to disguise their forgeries. In this paper, an anti-forensic technique is proposed to falsify the lateral chromatic aberration present in a digital image. Lateral chromatic aberration corresponds to the relative contraction or expansion between an image's color channels that occurs due to a lens's inability to focus all wavelengths of light on the same point. Previous work has used localized inconsistencies in an image's chromatic aberration to expose cut-and-paste image forgeries. The anti-forensic technique presented in this paper operates by estimating the expected lateral chromatic aberration at an image location, then removing deviations from this estimate caused by tampering or falsification. Experimental results are presented that demonstrate that our anti-forensic technique can be used to effectively disguise evidence of an image forgery.

  10. Color correction algorithms for digital cameras

    Bianco,

    2010-01-01

    The image recorded by a digital camera mainly depends on three factors: the physical content of the scene, the illumination incident on the scene, and the characteristics of the camera. This leads to a problem for many applications where the main interest is in the color rendition accuracy of the scene acquired. It is known that the color reproduction accuracy of a digital imaging acquisition device is a key factor to the overall perceived image quality, and that there are mainly two modules ...

  11. Aberrant DNA methylation of blood in schizophrenia by adjusting for estimated cellular proportions.

    Kinoshita, Makoto; Numata, Shusuke; Tajima, Atsushi; Ohi, Kazutaka; Hashimoto, Ryota; Shimodera, Shinji; Imoto, Issei; Takeda, Masatoshi; Ohmori, Tetsuro

    2014-12-01

    DNA methylation, which is the transference of a methyl group to the 5'-carbon position of the cytosine in a CpG dinucleotide, is one of the major mechanisms of epigenetic modifications. A number of studies have demonstrated altered DNA methylation of peripheral blood cells in schizophrenia (SCZ) in previous studies. However, most of these studies have been limited to the analysis of the CpG sites in CpG islands in gene promoter regions, and cell-type proportions of peripheral leukocytes, which may be one of the potential confounding factors for DNA methylation, have not been adjusted in these studies. In this study, we performed a genome-wide DNA methylation profiling of the peripheral leukocytes from patients with SCZ and from non-psychiatric controls (N = 105; 63 SCZ and 42 control subjects) using a quantitative high-resolution DNA methylation microarray which covered across the whole gene region (485,764 CpG dinucleotides). In the DNA methylation data analysis, we first estimated the cell-type proportions of each sample with a published algorithm. Next, we performed a surrogate variable analysis to identify potential confounding factors in our microarray data. Finally, we conducted a multiple linear regression analysis in consideration of these factors, including estimated cell-type proportions, and identified aberrant DNA methylation in SCZ at 2,552 CpG loci at a 5% false discovery rate correction. Our results suggest that altered DNA methylation may be involved in the pathophysiology of SCZ, and cell heterogeneity adjustments may be necessary for DNA methylation analysis. PMID:25052007

  12. Adaptive and aberrant reward prediction signals in the human brain.

    Roiser, J.P.; Stephan, K.E.; Ouden, H.E.M. den; Friston, K.J.; Joyce, E.M.

    2010-01-01

    Theories of the positive symptoms of schizophrenia hypothesize a role for aberrant reinforcement signaling driven by dysregulated dopamine transmission. Recently, we provided evidence of aberrant reward learning in symptomatic, but not asymptomatic patients with schizophrenia, using a novel paradigm

  13. Chromatic aberration and the roles of double-opponent and color-luminance neurons in color vision

    Vladusich, Tony

    2007-01-01

    How does the visual cortex encode color? I summarize a theory in which cortical double-opponent color neurons perform a role in color constancy and a complementary set of color-luminance neurons function to selectively correct for color fringes induced by chromatic aberration in the eye. The theory

  14. Differentiated Effects of Sensory Activities as Abolishing Operations via Non-Contingent Reinforcement on Academic and Aberrant Behavior

    Mancil, G. Richmond; Haydon, Todd; Boman, Marty

    2016-01-01

    The purpose of the study was to evaluate the effectiveness of sensory activities used as antecedent interventions on the percentage correct on academic tasks and rate of aberrant behavior in three elementary aged children with Autism Spectrum Disorders (ASD). Study activities were conducted in an after school program for children with ASD where…

  15. Corneal astigmatism change and wavefront aberration evaluation after cataract surgery: "Single" versus "paired opposite" clear corneal incisions

    Hasan Razmjoo; Nima Koosha; Mohammad Hadi Vaezi; Behrooz Rahimi; Alireza Peyman

    2014-01-01

    Background: Correcting the pre-existing astigmatism is an optimal goal in cataract surgery. The aim of this study is to compare the astigmatic correcting effect of a single regular 3.2 mm clear corneal incision (CCI) with paired opposite CCI in cataract patients and effect of these incisions on optical aberrations using the wavefront quantitative analysis. Materials and Methods: This was a randomized controlled trial study undertaken in an ophthalmology referral center on 50 patients plan...

  16. Primary aberrations in focused radially polarized vortex beams

    Biss, David P.; Brown, T. G.

    2004-02-01

    We study the effect of primary aberrations on the 3-D polarization of the electric field in a focused lowest order radially polarized beam. A full vector diffraction treatment of the focused beams is used. Attention is given to the effects of primary spherical, astigmatic, and comatic aberrations on the local polarization, Strehl ratio, and aberration induced degradation of the longitudinal field at focus

  17. Corrective actions

    The variety of corrective actions which have been attempted at many radioactive waste disposal sites points to less than ideal performance by present-day standards at many closed and presently-operating sites. In humid regions, most of the problems have encompassed some kind of water intrusion into the buried waste. In arid regions, the problems have centered on trench subsidence and intrusion by plant roots and animals. It is overwhelmingly apparent that any protective barrier for the buried waste, whether for water or biological intrusion, will depend on stable support from the underlying burial trenches. Trench subsidence must be halted, prevented, or circumscribed in some manner to assure this necessary long-term support. Final corrective actions will differ considerably from site to site, depending on unique geological, pedological, and meteorological environments. In the meantime, many of the shorter-term corrective actions described in this chapter can be implemented as immediate needs dictate

  18. Induced Higher-order aberrations after Laser In Situ Keratomileusis (LASIK) Performed with Wavefront-Guided IntraLase Femtosecond Laser in moderate to high Astigmatism

    Al-Zeraid, Ferial M.; Osuagwu, Uchechukwu L.

    2016-01-01

    Background Wavefront-guided Laser-assisted in situ keratomileusis (LASIK) is a widespread and effective surgical treatment for myopia and astigmatic correction but whether it induces higher-order aberrations remains controversial. The study was designed to evaluate the changes in higher-order aberrations after wavefront-guided ablation with IntraLase femtosecond laser in moderate to high astigmatism. Methods Twenty-three eyes of 15 patients with moderate to high astigmatism (mean cylinder, −3...

  19. Do patients with schizophrenia exhibit aberrant salience?

    Roiser, J. P.; Stephan, K E; den Ouden, H. E. M.; Barnes, T. R. E.; Friston, K.J.; Joyce, E. M.

    2009-01-01

    BACKGROUND: It has been suggested that some psychotic symptoms reflect ‘aberrant salience’, related to dysfunctional reward learning. To test this hypothesis we investigated whether patients with schizophrenia showed impaired learning of task-relevant stimulusreinforcement associations in the presence of distracting task-irrelevant cues. METHODS: We tested 20 medicated patients with schizophrenia and 17 controls on a reaction time game, the Salience Attribution Test. In this game, ...

  20. Assessing the construct validity of aberrant salience

    Kristin Schmidt

    2009-12-01

    Full Text Available We sought to validate the psychometric properties of a recently developed paradigm that aims to measure salience attribution processes proposed to contribute to positive psychotic symptoms, the Salience Attribution Test (SAT. The “aberrant salience” measure from the SAT showed good face validity in previous results, with elevated scores both in high-schizotypy individuals, and in patients with schizophrenia suffering from delusions. Exploring the construct validity of salience attribution variables derived from the SAT is important, since other factors, including latent inhibition/learned irrelevance, attention, probabilistic reward learning, sensitivity to probability, general cognitive ability and working memory could influence these measures. Fifty healthy participants completed schizotypy scales, the SAT, a learned irrelevance task, and a number of other cognitive tasks tapping into potentially confounding processes. Behavioural measures of interest from each task were entered into a principal components analysis, which yielded a five-factor structure accounting for ~75% percent of the variance in behaviour. Implicit aberrant salience was found to load onto its own factor, which was associated with elevated “Introvertive Anhedonia” schizotypy, replicating our previous finding. Learned irrelevance loaded onto a separate factor, which also included implicit adaptive salience, but was not associated with schizotypy. Explicit adaptive and aberrant salience, along with a measure of probabilistic learning, loaded onto a further factor, though this also did not correlate with schizotypy. These results suggest that the measures of learned irrelevance and implicit adaptive salience might be based on similar underlying processes, which are dissociable both from implicit aberrant salience and explicit measures of salience.

  1. Saving SALT: repairs to the spherical aberration corrector of the Southern African Large Telescope (SALT)

    O'Donoghue, Darragh E.; O'Connor, James; Crause, Lisa A.; Strumpfer, Francois; Strydom, Ockert J.; Brink, Janus D.; Sass, Craig; Wiid, Eben; Atad-Ettedgui, Eli

    2010-07-01

    The construction of the Southern African Large Telescope (SALT) was largely completed by the end of 2005. At the beginning of 2006, it was realized that the telescope's image quality suffered from optical aberrations, chiefly a focus gradient across the focal plane, but also accompanied by astigmatism and higher order aberrations. In the previous conference in this series, a paper was presented describing the optical system engineering investigation which had been conducted to diagnose the problem. This investigation exonerated the primary mirror as the cause, as well as the science instruments, and was isolated to the interface between the telescope and a major optical sub-system, the spherical aberration corrector (SAC). This is a complex sub-system of four aspheric mirrors which corrects the spherical aberration of the 11-m primary mirror. In the last two years, a solution to this problem was developed which involved removing the SAC from the telescope, installing a modification of the SAC/telescope interface, re-aligning and testing the four SAC mirrors and re-installation on the telescope. This paper describes the plan, discusses the details and shows progress to date and the current status.

  2. Phase-Locked Fibre Array for Coherent Combination and Atmosphere Aberration Compensation

    HOU Jing; XIAO Rui

    2006-01-01

    We report a fibre amplifier array that not only achieves coherent beam combination by compensation of phase noises of fibre amplifier, but also accomplishes correction of atmosphere aberration. It is of master-oscillatormultiple-amplifier (MOPA) configuration, which can be phase-locked by the multidither principle or heterodyne detection principle. First laboratory experiments of atmosphere aberration compensation of a three-element fibre amplifier array are reported. The atmosphere aberration is created by a phase screen in the experiment. The phase changes of the beam, which are introduced by the fibre amplifier and the phase screen, are both detected by the heterodyne detection method. Phase modulators are controlled to compensate for the phase in the three paths. No matter whether there is a phase screen producing atmosphere aberration or not, the dim dynamic interference fringes in the far field turn to a clear and stable pattern, and the peak intensity is maximized. It is indicated that the fibre amplifier array is phase-locked, and coherent combination of the three beams is achieved.It can be used not only to obtain high power fibre laser array but also in laser space communication.

  3. Chromosome painting in biological dosimetry: Semi-automatic system to score stable chromosome aberrations

    From the beginning of the description of the procedure of chromosome painting by fluorescence in situ hybridization (FISH), it was thought its possible application to score induced chromosomal aberrations in radiation exposition. With chromosome painting it is possible to detect changes between chromosomes that has been validated in radiation exposition. Translocation scoring by FISH, contrarily to the unstable dicentrics, mainly detect stable chromosome aberrations that do not disappear, it allows the capability of quantify delayed acute expositions or chronic cumulative expositions. The large number of cells that have to be analyzed for high accuracy, specially when dealing with low radiation doses, makes it almost imperative to use an automatic analysis system. After validate translocation scoring by FISH in our, we have evaluated the ability and sensitivity to detect chromosomal aberrations by chromosome using different paint probes used, showing that any combination of paint probes can be used to score induced chromosomal aberrations. Our group has developed a FISH analysis that is currently being adapted for translocation scoring analysis. It includes systematic error correction and internal control probes. The performance tests carried out show that 9,000 cells can be analyzed in 10 hr. using a Sparc 4/370. Although with a faster computer, a higher throughput is expected, for large population screening or very low radiation doses, this performance still has to be improved. (author)

  4. On the implications of the Galactic aberration in proper motions for celestial reference frame

    Malkin, Zinovy

    2014-01-01

    During the last years, much attention has been paid to the astrometric implications of the galactic aberration in proper motions (GA). This effect causes systematic errors in astrometric measurements at a microarcsecond level. Some authors consider it so serious that it requires redefinition of the celestial reference system (CRF). We argue that such attention to the GA is too much exaggerated. It is just a small astrometric correction that must be taken into account during highly accurate astrometric and geodetic data processing. The accuracy of this correction depends on accuracy of the Galactic rotation parameters and, for most application, on the accuracy of the rotation matrix between Galactic and equatorial systems. Our analysis has shown that our today knowledge of these two factors is sufficient to compute the GA correction with accuracy of better than 10%. The remaining effect at a level of few tenths microarcsecond/yr is negligible nowadays. Another consequence of introducing the GA correction is ne...

  5. The Effect of Cross-Linking Treatment on Conus Curvature and Higher Order Corneal Aberrations in Keratoconus

    Sücattin İlker Kocamış

    2014-05-01

    Full Text Available Objectives: To study the effect of corneal collagen cross-linking on conus curvature and corneal aberrations in keratoconus. Materials and Methods: The medical records of thirty-seven eyes of 32 progressive keratoconus patients (17 male, 15 female, mean age: 22.13±4.64 years who had undergone corneal cross-linking were evaluated retrospectively. The change in refractive errors, visual acuity on Snellen charts, average keratometry, conus curvature, and corneal aberrations calculated at 6.00 mm pupil size throughout the follow-up time were compared with paired t-test. The correlation of the change in best-corrected visual acuity and in uncorrected visual acuity with the change of the parameters which had statistically significant difference at 18 months was studied with Pearson’s correlation analysis. Results: The best-corrected visual acuity, uncorrected visual acuity, spherical and cylindrical error, average keratometry, conus curvature, vertical coma, total corneal aberrations, total higher order aberrations had statistically significant difference at 18 postoperative months (p=0.001. Spherical aberration (p=0.95 and horizontal coma (p=0.78 did not show statistically significant difference at the end of follow-up. The change in uncorrected visual acuity correlated with change in conus curvature (r=-0.420, p=0.01 and change in cylindrical refraction (r=0.453, p=0.005 at 18 months. The change in best-corrected visual acuity correlated with change in total corneal aberrations (r=-0.490, p=0.002, vertical coma (r=0.408, p=0.01, average keratometry (r=-0.386, p=0.02, conus curvature (r=-0.381, p=0.02, and total higher order aberrations (r=-0.326, p=0.05 at 18 months. Conclusion: Corneal collagen cross-linking treatment applied to progressive keratoconus cases induces significant decrease in conus curvature, in total corneal aberrations, and in higher order aberrations, especially in vertical coma, and leads to a prominent visual acuity increase

  6. Radiotherapeutical chromosomal aberrations in laryngeal cancer patients

    Stošić-Divjak Svetlana L.

    2009-01-01

    Full Text Available Introduction. The authors present the results of cytogenetic analysis of 21 patients with laryngeal carcinomas diagnosed and treated in the period 1995-2000 at the Institute of Otorhinolaryngology and Maxillofacial Surgery, Clinical Center of Serbia and Clinical Center of Novi Sad. Material and methods. The patients were specially monitored and the material was analyzed at the Institute of Human Genetics of the School of Medicine in Belgrade as well as in the Laboratory for Radiological Protection of the Institute of Occupational and Radiological Health 'Dr Dragomir Karajovic' in Belgrade. Results. The incidence of chromosomal aberrations and incidence of exchange of material between sister chromatids were observed in the preparation of the metaphasic lymphocyte chromosomes of the peripheral blood obtained in the culture. Structural aberrations were found on the chromosomes in the form of breakups, rings, translocations and dicentrics as early as after a single exposure of patients to tumor radiation dose of 2 Gy in the field sized 5x7. Out of the total number of 35 cultivated blood samples obtained from 13 patients, 21 were successfully cultivated and they were proved to contain chromosomal aberrations. Some of the peripheral blood samples failed to show cell growth in vitro due to the lethal cell damages in vivo. Discussion.. We have consluded that the number of structural aberrations cannot be used as a biological measure of the absorbed ionizing radiation dose. The presence of aberrations per se is indicative of the mutagenic effect of the ionizing radiation, which was also confirmed in our series on the original model by cultivation of the peripheral blood lymphocytes in the culture of the cells of the volunteer donors upon in vitro radiation. Using the method of bromdeoxyuridylreductase, the increased incidence of SCE as a mutagenic effect was registered. Conclusion. It has been concluded that the increase of absorbed radiation dose in

  7. Chromatic variation of aberration: the role of induced aberrations and raytrace direction

    Berner, A.; Nobis, T.; Shafer, D.; Gross, H.

    2015-09-01

    The design and optimization process of an optical system contains several first order steps. The definition of the appropriate lens type and the fixation of the raytrace direction are some of them. The latter can be understood as a hidden assumption rather than an aware design step. This is usually followed by the determination of the paraxial lens layout calculated for the primary wavelength. It is obvious, that for this primary wavelength the paraxial calculations are independent of raytrace direction. Today, most of the lens designs are specified not to work only for one wavelength, but in a certain wavelength range. Considering such rays of other wavelengths, one can observe that depending on the direction there will already occur differences in the first order chromatic aberrations and additionally in the chromatic variation of the third-order aberrations. The reason for this effect are induced aberrations emerging from one surface to the following surfaces by perturbed ray heights and ray angles. It can be shown, that the total amount of surface-resolved first order chromatic aberrations and the chromatic variation of the five primary aberrations can be split into an intrinsic part and an induced part. The intrinsic part is independent of the raytrace direction whereas the induced part is not.

  8. Alignment of a three-mirror anastigmatic telescope using nodal aberration theory.

    Gu, Zhiyuan; Yan, Changxiang; Wang, Yang

    2015-09-21

    Most computer-aided alignment methods for optical systems are based on numerical algorithms at present, which omit aberration theory. This paper presents a novel alignment algorithm for three-mirror anastigmatic (TMA) telescopes using Nodal Aberration Theory (NAT). The aberration field decenter vectors and boresight error of misaligned TMA telescopes are derived. Two alignment models based on 3rd and 5th order NAT are established successively and compared in the same alignment example. It is found that the average and the maximum RMS wavefront errors in the whole field of view of 0.3° × 0.15° are 0.063 λ (λ = 1 μm) and 0.068 λ respectively after the 4th alignment action with the 3rd order model, and 0.011 λ and 0.025 λ (nominal values) respectively after the 3rd alignment action with the 5th order model. Monte-Carlo alignment simulations are carried out with the 5th order model. It shows that the 5th order model still has good performance even when the misalignment variables are large (-1 mm≤linear misalignment≤1 mm, -0.1°≤angular misalignment≤0.1°), and multiple iterative alignments are needed when the misalignment variables increase. PMID:26406716

  9. Shell corrections in stopping powers

    Bichsel, H.

    2002-05-01

    One of the theories of the electronic stopping power S for fast light ions was derived by Bethe. The algorithm currently used for the calculation of S includes terms known as the mean excitation energy I, the shell correction, the Barkas correction, and the Bloch correction. These terms are described here. For the calculation of the shell corrections an atomic model is used, which is more realistic than the hydrogenic approximation used so far. A comparison is made with similar calculations in which the local plasma approximation is utilized. Close agreement with the experimental data for protons with energies from 0.3 to 10 MeV traversing Al and Si is found without the need for adjustable parameters for the shell corrections.

  10. Chromosomal aberrations in ISS crew members

    Johannes, Christian; Goedecke, Wolfgang; Antonopoulos, Alexandra

    2012-07-01

    High energy radiation is a major risk factor in manned space missions. Astronauts and cosmonauts are exposed to ionising radiations of cosmic and solar origin, while on the Earth's surface people are well protected by the atmosphere and a deflecting magnetic field. There are now data available describing the dose and the quality of ionising radiation on-board of the International Space Station (ISS). Nonetheless, the effect of increased radiation dose on mutation rates of ISS crew members are hard to predict. Therefore, direct measurements of mutation rates are required in order to better estimate the radiation risk for longer duration missions. The analysis of chromosomal aberrations in peripheral blood lymphocytes is a well established method to measure radiation-induced mutations. We present data of chromosome aberration analyses from lymphocyte metaphase spreads of ISS crew members participating in short term (10-14 days) or long term (around 6 months) missions. From each subject we received two blood samples. The first sample was drawn about 10 days before launch and a second one within 3 days after return from flight. From lymphocyte cultures metaphase plates were prepared on glass slides. Giemsa stained and in situ hybridised metaphases were scored for chromosome changes in pre-flight and post-flight blood samples and the mutation rates were compared. Results obtained in chromosomal studies on long-term flight crew members showed pronounced inter-individual differences in the response to elevated radiation levels. Overall slight but significant elevations of typical radiation induced aberrations, i.e., dicentric chromosomes and reciprocal translocations have been observed. Our data indicate no elevation of mutation rates due to short term stays on-board the ISS.

  11. Combined Approach for Nonuniformity Correction in Infrared Focal Plane Array

    XUE Hui

    2009-01-01

    A new algorithm of nonuniformity correction for infrared focal plane array(IRFPA) is reported,which is a combined algorithm based on both the two-point correction and artificial neural networks correction.The combined algorithm is calibrated by two-point correction,and the calibrated correction coefficients are automatically modified by BP algorithm.So it is not only calibrated,but also real-time processed.In adaptive nonuniformity correction algorithm,the phenomena ghost artifact and target fade-out are avoided by edge extraction.In order to get intensified image,the modified median filters are adopted.The simulated data indicates the proposed scheme is an effective algorithm.

  12. Aberrant splicing and drug resistance in AML.

    de Necochea-Campion, Rosalia; Shouse, Geoffrey P; Zhou, Qi; Mirshahidi, Saied; Chen, Chien-Shing

    2016-01-01

    The advent of next-generation sequencing technologies has unveiled a new window into the heterogeneity of acute myeloid leukemia (AML). In particular, recurrent mutations in spliceosome machinery and genome-wide aberrant splicing events have been recognized as a prominent component of this disease. This review will focus on how these factors influence drug resistance through altered splicing of tumor suppressor and oncogenes and dysregulation of the apoptotic signaling network. A better understanding of these factors in disease progression is necessary to design appropriate therapeutic strategies recognizing specific alternatively spliced or mutated oncogenic targets. PMID:27613060

  13. Aberrations in Fresnel Lenses and Mirrors

    Gregory, Don

    1999-01-01

    The NASA/MSFC Shooting Star program revealed a number of technical problems that must be solved before solar thermal propulsion can become a reality. The fundamental problem of interest here is the collection of solar energy. This is the first step in the propulsion process and indeed the most important. Everything else depends on the efficiency and focusing ability of the collection lens or mirror. An initial model of Fresnel lens behavior using a wave optics approach has been completed and the results were encouraging enough to warrant an experimental investigation. This experimental investigation confirmed some of the effects predicted and produced invaluable photographic evidence of coherence based diffraction and aberration.

  14. 3D holographic head mounted display using holographic optical elements with astigmatism aberration compensation.

    Yeom, Han-Ju; Kim, Hee-Jae; Kim, Seong-Bok; Zhang, HuiJun; Li, BoNi; Ji, Yeong-Min; Kim, Sang-Hoo; Park, Jae-Hyeung

    2015-12-14

    We propose a bar-type three-dimensional holographic head mounted display using two holographic optical elements. Conventional stereoscopic head mounted displays may suffer from eye fatigue because the images presented to each eye are two-dimensional ones, which causes mismatch between the accommodation and vergence responses of the eye. The proposed holographic head mounted display delivers three-dimensional holographic images to each eye, removing the eye fatigue problem. In this paper, we discuss the configuration of the bar-type waveguide head mounted displays and analyze the aberration caused by the non-symmetric diffraction angle of the holographic optical elements which are used as input and output couplers. Pre-distortion of the hologram is also proposed in the paper to compensate the aberration. The experimental results show that proposed head mounted display can present three-dimensional see-through holographic images to each eye with correct focus cues. PMID:26698993

  15. Aberration-free volumetric high-speed imaging of in vivo retina

    Hillmann, Dierck; Hain, Carola; Sudkamp, Helge; Franke, Gesa; Pfäffle, Clara; Winter, Christian; Hüttmann, Gereon

    2016-01-01

    Research and medicine rely on non-invasive optical techniques to image living tissue with high resolution in space and time. But so far a single data acquisition could not provide entirely diffraction-limited tomographic volumes of rapidly moving or changing targets, which additionally becomes increasingly difficult in the presence of aberrations, e.g., when imaging retina in vivo. We show, that a simple interferometric setup based on parallelized optical coherence tomography acquires volumetric data with 10 billion voxels per second, exceeding previous imaging speeds by an order of magnitude. This allows us to computationally obtain and correct defocus and aberrations resulting in entirely diffraction-limited volumes. As demonstration, we imaged living human retina with clearly visible nerve fiber layer, small capillary networks, and photoreceptor cells, but the technique is also applicable to obtain phase-sensitive volumes of other scattering structures at unprecedented acquisition speeds.

  16. Evolutionary algorithms

    Szöllösi, Tomáš

    2012-01-01

    The first part of this work deals with the optimization and evolutionary algorithms which are used as a tool to solve complex optimization problems. The discussed algorithms are Differential Evolution, Genetic Algorithm, Simulated Annealing and deterministic non-evolutionary algorithm Taboo Search.. Consequently the discussion is held on the issue of testing the optimization algorithms through the use of the test function gallery and comparison solution all algorithms on Travelling salesman p...

  17. Automatic Compensation of Total Phase Aberrations in Digital Holographic Biological Imaging

    ZHANG Yi-Zhuo; WANG Da-Yong; WANG Yun-Xin; TAO Shi-Quan

    2011-01-01

    Digital holographic microscopy has been a powerful metrological technique for phase-contrast imaging. However inherent phase aberrations always exist and degrade the quality of the phase-contrast images. A surface fitting method based on an improved mathematic model is proposed, which can be used to remove the phase aberrations without any pre-knowledge of the setup or manual operation. The improved mathematic model includes not only the usual terms but also the cross terms and the high order terms to describe the phase aberrations with high accuracy. Meanwhile, a non-iterative algorithm is used to solve the parametersand thus less computational load is imposed. The proposed method is applied to the live imaging of cells. The experimental results verify its validity.%Digital holographic microscopy has been a powerful metrological technique for phase-contrast imaging.However inherent phase aberrations always exist and degrade the quality of the phase-contrast images.A surface fitting method based on an improved mathematic model is proposed,which can be used to remove the phase aberrations without any pre-knowledge of the setup or manual operation.The improved mathematic model includes not only the usual terms but also the cross terms and the high order terms to describe the phase aberrations with high accuracy.Meanwhile,a non-iterative algorithm is used to solve the parametersand thus less computational load is imposed.The proposed method is applied to the live imaging of cells.The experimental results verify its validity.Digital holographic microscopy (DHM) has been a powerful metrological technique which permits realtime quantitative phase-contrast imaging.The hologram is recorded by a CCD or a CMOS camera while the reconstruction is performed numerically.Many digital signal processing techniques have been introduced to enhance DHM for speckle removal,[1,2] aperture truncation,[3] phase unwrapping[4,5] etc.It has been widely used in biomedical optics for

  18. Comparison of swarm intelligence algorithms in atmospheric compensation for free space optical communication

    Li, Zhaokun; Cao, Jingtai; Liu, Wei; Feng, Jianfeng; Zhao, Xiaohui

    2015-03-01

    We use conventional adaptive optical system to compensate atmospheric turbulence in free space optical (FSO) communication system under strong scintillation circumstances, undesired wave-front measurements based on Shark-Hartman sensor (SH). Since wavefront sensor-less adaptive optics is a feasible option, we propose several swarm intelligence algorithms to compensate the wavefront aberration from atmospheric interference in FSO and mainly discuss the algorithm principle, basic flows, and simulation result. The numerical simulation experiment and result analysis show that compared with SPGD algorithm, the proposed algorithms can effectively restrain wavefront aberration, and improve convergence rate of the algorithms and the coupling efficiency of receiver in large extent.

  19. Sensitivity of singular beams in the presence of Zernike aberrations

    Dixit, Awakash; Mishra, Sanjay Kumar; Gupta, Arun Kumar

    2015-08-01

    Singular beams in the presence of Zernike aberrations create an opportunity for various applications such as trapping and manipulation of micro-particles, atomic optics and atmospheric optics. In the milieu of importance of the role of aberrations, sensitivity of singular beams with Zernike aberrations is studied. In this paper, the effect of various Zernike aberrations on a singular beam is reported in terms of its Point Spread Function (PSF) deformations. The intensity distributions around the focal plane, i.e. PSF, of the singular beam of various topological charges and in the presence of different strengths of Zernike aberrations are theoretically estimated by the Huygens-Fresnel diffraction integral. Experimentally, the singular beams have been generated and known strengths of Zernike aberration introduced in the beam by a phase-only Spatial Light Modulator. Metric Ensquared Energy is used to analyze the PSF of the corresponding intensity distributions of the singular beams. The experimental results have been validated with numerical simulation.

  20. Calculation of aberration of electron gun in color picture tubes

    In a color picture tube, aberration is an important factor influencing the electron beam spot on the screen. This paper discusses a new method which is used to calculate the aberration of an electron gun in a CPT. In this method, electron trajectories are simulated directly in the cathode and the pre-focus lens. In the main lens, the asymptotic aberration is calculated to decide the size of the image. Some results of the calculation are shown in this paper. (orig.)

  1. Monitoring of chromosomal aberrations in natural populations of Pinus pallasiana

    V. P. Koba

    2012-01-01

    This paper presents the results of monitoring research of the chromosome aberrations at the stage of anaphase-telophase. The statistical characteristics of dynamics of chromosomal aberrations in populations of Pinus pallasiana D. Don across the high-altitude zones of the Mountain Crimea is given. It is established that on the southern macroslope of the Crimean Main Ridge the frequency of chromosomal aberrations in the P. pallasiana stands is higher in the lower zone in comparison with the mid...

  2. Aberrations caused by mechanical misalignments in electrostatic quadrupole lens systems

    Baranova, L. A.; Read, F. H.

    Image aberrations resulting from small misalignments in quadrupole lenses multiplets have been analysed. Analytical formulas for the coefficients of the beam displacement, astigmatism and coma associated with misalignments in a general quadrupole lens system have been derived. Numerical computations of systems of three and four quadrupole lenses have also been carried out. The aberration figures obtained for systems with and without a mechanical defect are compared. The aberration coefficients that have been obtained can be used for estimating tolerance limits for lens misalignments.

  3. Chromosomal aberrations in children exposed to diagnostic x-rays

    Among children who have received high x-ray doses congenital dislocation of the hip joint is the predominating diagnosis. In a series of 9 children who had received high x-ray doses (8 with luxation of the hip joint and one with achondroplasia) a significant increase of chromosomal aberrations was found. The increase concerned mainly chromosome type aberrations. The shorter the time since the last x-ray investigation the higher was the frequency of chromosome type aberrations. (author)

  4. Hydronephrosis by an Aberrant Renal Artery: A Case Report

    Park, Byoung Seok; Jeong, Taek Kyun; Ma, Seong Kwon; Kim, Soo Wan; Kim, Nam Ho; Choi, Ki Chul; Jeong, Yong Yeon

    2003-01-01

    Ureteropelvic junction obstruction is usually intrinsic and is most common in children. Aberrant renal arteries are present in about 30% of individuals. Aberrant renal arteries to the inferior pole cross anteriorly to the ureter and may cause hydronephrosis. To the best of our knowledge, although there are some papers about aberrant renal arteries producing ureteropelvic junction obstruction, there is no report of a case which is diagnosed by the new modalities, such as computed tomography an...

  5. Pattern of Chromosomal Aberrations in Patients from North East Iran

    Saeedeh Ghazaey; Farzaneh Mirzaei; Mitra Ahadian; Fatemeh Keifi; Semiramis Tootian; Mohammad Reza Abbaszadegan

    2013-01-01

    Objective: Chromosomal aberrations are common causes of multiple anomaly syndromes. Recurrent chromosomal aberrations have been identified by conventional cytogenetic methods used widely as one of the most important clinical diagnostic techniques. Materials and Methods: In this retrospective study, the incidences of chromosomal aberrations were evaluated in a six year period from 2005 to 2011 in Pardis Clinical and Genetics Laboratory on patients referred to from Mashhad and other cities in K...

  6. Comparative study of visual acuity and aberrations after intralase femtosecond LASIK: small corneal flap versus big corneal flap

    Ya-Li; Zhang; Lei; Liu; Chang-Xia; Cui; Ming; Hu; Zhao-Na; Li; Li-Jun; Cao; Xiu-Hua; Jing; Guo-Ying; Mu

    2014-01-01

    AIM:To study the effects of different flap sizes on visual acuity, refractive outcomes, and aberrations after femtosecond laser for laser keratomileusis (LASIK). ·METHODS: In each of the forty patients enrolled, 1 eye was randomly assigned to receive treatment with a 8.1mm diameter corneal flap, defined as the small flap, while the other eye was treated with a 8.6mm diameter corneal flap, defined as the big flap. Refractive errors, visual acuity, and higher -order aberrations were compared between the two groups at week 1, month 1 and 3 postoperatively. · RESULTS: The postoperative refractive errors and visual acuity all conformed to the intended goal. Postoperative higher -order aberrations were increased, especially in spherical aberration (Z12) and vertical coma (Z7). There were no statistically significant differences between the two groups in terms of postoperative refractive errors, visual acuity, root mean square of total HOAs (HO -RMS), trefoil 30° (Z6), vertical coma (Z7), horizontal coma (Z8), trefoil 0° (Z9), and spherical aberration (Z12) at any point during the postoperative follow-up. ·CONCLUSION: Both the small and big flaps are safe and effective procedures to correct myopia, provided the exposure stroma meets the excimer laser ablations. The personalized size corneal flap is feasible, as we can design the size of corneal flap based on the principle that the corneal flap diameter should be equal to or greater than the sum of the maximum ablation diameter and apparatus error.

  7. Chromosome aberration analysis for biological dosimetry: a review

    Among various biological dosimetry techniques, dicentric chromosome aberration method appears to be the method of choice in analysing accidental radiation exposure in most of the laboratories. The major advantage of this method is its sensitivity as the number of dicentric chromosomes present in control population is too small and more importantly radiation induces mainly dicentric chromosome aberration among unstable aberration. This report brings out the historical development of various cytogenetic methods, the basic structure of DNA, chromosomes and different forms of chromosome aberrations. It also highlights the construction of dose-response curve for dicentric chromosome and its use in the estimation of radiation dose. (author)

  8. Cellular origin of prognostic chromosomal aberrations in AML patients

    Mora-Jensen, H.; Jendholm, J.; Rapin, N.;

    2015-01-01

    these aberrations occur in normal hematopoietic stem and progenitor cells (HSCs/HPCs) before definitive leukemic transformation through additional acquisition of a few (that is, mostly 1 or 2) leukemia-promoting driver aberrations. NGS studies on sorted bone marrow (BM) populations of AML patients with...... molecular aberrations that were present in the fully transformed committed HPCs together with the prognostic driver aberration. Adding to this vast heterogeneity and complexity of AML genomes and their clonal evolution, a recent study of a murine AML model demonstrated that t(9;11) AML originating from HSCs...

  9. Phase gradient algorithm method for three-dimensional holographic ladar imaging.

    Stafford, Jason W; Duncan, Bradley D; Rabb, David J

    2016-06-10

    Three-dimensional (3D) holographic ladar uses digital holography with frequency diversity to add the ability to resolve targets in range. A key challenge is that since individual frequency samples are not recorded simultaneously, differential phase aberrations may exist between them, making it difficult to achieve range compression. We describe steps specific to this modality so that phase gradient algorithms (PGA) can be applied to 3D holographic ladar data for phase corrections across multiple temporal frequency samples. Substantial improvement of range compression is demonstrated with a laboratory experiment where our modified PGA technique is applied. Additionally, the PGA estimator is demonstrated to be efficient for this application, and the maximum entropy saturation behavior of the estimator is analytically described. PMID:27409018

  10. Evolutionary algorithms

    Eremeev, Anton V.

    2015-01-01

    This manuscript contains an outline of lectures course "Evolutionary Algorithms" read by the author in Omsk State University n.a. F.M.Dostoevsky. The course covers Canonic Genetic Algorithm and various other genetic algorithms as well as evolutioanry algorithms in general. Some facts, such as the Rotation Property of crossover, the Schemata Theorem, GA performance as a local search and "almost surely" convergence of evolutionary algorithms are given with complete proofs. The text is in Russian.

  11. Pileup correction of microdosimetric spectra

    Langen, K M; Lennox, A J; Kroc, T K; De Luca, P M

    2002-01-01

    Microdosimetric spectra were measured at the Fermilab neutron therapy facility using low pressure proportional counters operated in pulse mode. The neutron beam has a very low duty cycle (<0.1%) and consequently a high instantaneous dose rate which causes distortions of the microdosimetric spectra due to pulse pileup. The determination of undistorted spectra at this facility necessitated (i) the modified operation of the proton accelerator to reduce the instantaneous dose rate and (ii) the establishment of a computational procedure to correct the measured spectra for remaining pileup distortions. In support of the latter effort, two different pileup simulation algorithms using analytical and Monte-Carlo-based approaches were developed. While the analytical algorithm allows a detailed analysis of pileup processes it only treats two-pulse and three-pulse pileup and its validity is hence restricted. A Monte-Carlo-based pileup algorithm was developed that inherently treats all degrees of pileup. This algorithm...

  12. Spelling Correction in Agglutinative Languages

    Oflazer, K

    1994-01-01

    This paper presents an approach to spelling correction in agglutinative languages that is based on two-level morphology and a dynamic programming based search algorithm. Spelling correction in agglutinative languages is significantly different than in languages like English. The concept of a word in such languages is much wider that the entries found in a dictionary, owing to {}~productive word formation by derivational and inflectional affixations. After an overview of certain issues and relevant mathematical preliminaries, we formally present the problem and our solution. We then present results from our experiments with spelling correction in Turkish, a Ural--Altaic agglutinative language. Our results indicate that we can find the intended correct word in 95\\% of the cases and offer it as the first candidate in 74\\% of the cases, when the edit distance is 1.

  13. Aberrant angiogenesis: The gateway to diabetic complications

    Sunil K Kota

    2012-01-01

    Full Text Available Diabetes Mellitus is a metabolic cum vascular syndrome with resultant abnormalities in both micro- and macrovasculature. The adverse long-term effects of diabetes mellitus have been described to involve many organ systems. Apart from hyperglycemia, abnormalities of angiogenesis may cause or contribute toward many of the clinical manifestations of diabetes. These are implicated in the pathogenesis of vascular abnormalities of the retina, kidneys, and fetus, impaired wound healing, increased risk of rejection of transplanted organs, and impaired formation of coronary collaterals. A perplexing feature of the aberrant angiogenesis is that excessive and insufficient angiogenesis can occur in different organs in the same individual. The current article hereby reviews the molecular mechanisms including abnormalities in growth factors, cytokines, and metabolic derangements, clinical implications, and therapeutic options of dealing with abnormal angiogenesis in diabetes.

  14. Using nodal aberration theory to understand the aberrations of multiple unobscured three mirror anastigmatic (TMA) telescopes

    Thompson, Kevin P.; Fuerschbach, Kyle; Schmid, Tobias; Rolland, Jannick P.

    2009-08-01

    The alignment of three mirror anastigmatic (TMA) telescopes has been studied since their invention in the 60s. Recently, Thompson et al.1 reported that other than the conventional uniform coma over the field caused by misalignment, TMA telescopes display only one other misalignment induced aberration, field-asymmetric, field-linear astigmatism. Currently, an instrument with three TMAs is under development as the primary spectrometer on the James Webb Space Telescope. This paper will report on the application of Nodal Aberration Theory (NAT) to understanding the optical design of an optical system with multiple TMAs as a first step towards investigating and potentially independently analyzing the sensitivities to alignment of this key instrument.

  15. Interchromosomal distribution of gamma ray-induced chromatid aberrations in Chinese hamster ovary cells

    Inter chromosomal distributions of breakpoints from chromatid-type aberrations induced by gamma rays in Chinese hamster ovary cells were analyzed. In most chromosomes the distribution was as expected from chromosome lengths for simple breaks or the respective relative corrected length in case of exchanges. There were deviations from expectation in a few chromosomes for chromatid breaks, interchanges, intra-arm intra changes and inter-arm intra changes. Especially interesting are the results concerning chromosomes 2 and 8, which were more often involved in exchanges than expected. An 'exchange phenotype' for these chromosomes is proposed and possible explanations for the nonrandom distribution of chromosome breakpoints are presented. (author)

  16. Eye-tracking technology for real-time monitoring of transverse chromatic aberration.

    Privitera, Claudio M; Sabesan, Ramkumar; Winter, Simon; Tiruveedhula, Pavan; Roorda, Austin

    2016-04-15

    Objective measurements of transverse chromatic aberration (TCA) between two or more wavelengths with an adaptive optics scanning laser ophthalmoscope (AOSLO) are very accurate, but frequent measurements are impractical in many experimental settings. Here, we demonstrate a pupil tracker that can accurately measure relative changes in TCA that are caused by small shifts in the pupil relative to the AOSLO imaging beam. Corrections for TCA caused by these shifts improve the measurement of TCA as a function of eccentricity, revealing a strong linear relationship. We propose that pupil tracking be integrated into AOSLO systems, where robust and unobtrusive control of TCA is required. PMID:27082330

  17. Expressions for third-order aberration theory for holographic images

    S K Tripathy; S Ananda Rao

    2003-01-01

    Expressions for third-order aberration in the reconstructed wave front of point objects are established by Meier. But Smith, Neil Mohon, Sweatt independently reported that their results differ from that of Meier. We found that coefficients for spherical aberration, astigmatism, tally with Meier’s while coefficients for distortion and coma differ.

  18. Fifth-order aberrations in magnetic quadrupole-octupole systems

    Explicit integral expressions are given for the fifth-order geometrical aberration coefficients in rectilinear magnetic quadrupole-octupole systems used for the transport of nonrelativistic charged particle beams. The numerical values of the fifth-order geometrical aberration coefficients for a rare earth cobalt (REC) quadrupole doublet are given as an example. 26 refs., 5 figs., 4 tabs

  19. Aberration analysis calculations for synchrotron radiation beamline design

    The application of ray deviation calculations based on aberration coefficients for a single optical surface for the design of beamline optical systems is reviewed. A systematic development is presented which allows insight into which aberration may be causing the rays to deviate from perfect focus. A new development allowing analytical calculation of line shape is presented

  20. Statistical virtual eye model based on wavefront aberration

    Wang, Jie-Mei; Liu, Chun-Ling; Luo, Yi-Ning; Liu, Yi-Guang; Hu, Bing-Jie

    2012-01-01

    Wavefront aberration affects the quality of retinal image directly. This paper reviews the representation and reconstruction of wavefront aberration, as well as the construction of virtual eye model based on Zernike polynomial coefficients. In addition, the promising prospect of virtual eye model is emphasized.

  1. Exact solutions in the scalar diffraction theory of aberrations.

    Budgor, A B

    1980-05-15

    A simple exact method is presented for evaluating the circularly symmetric Fresnel-Kirchhoff diffraction integral in the presence of Seidel aberrations, all orders of spherical aberration, and all orders of linear coma. The resultant formulas involve a simple quadrature over a single special function of mathematics. PMID:20221084

  2. Exact solutions in the scalar diffraction theory of aberrations

    A simple exact method is presented for evaluating the circularly symmetric Fresnel-Kirchhoff diffraction integral in the presence of Seidel aberrations, all orders of spherical aberration, and all orders of linear coma. The resultant formulas involve a simple quadrature over a single special function of mathematics

  3. Algorithmic cryptanalysis

    Joux, Antoine

    2009-01-01

    Illustrating the power of algorithms, Algorithmic Cryptanalysis describes algorithmic methods with cryptographically relevant examples. Focusing on both private- and public-key cryptographic algorithms, it presents each algorithm either as a textual description, in pseudo-code, or in a C code program.Divided into three parts, the book begins with a short introduction to cryptography and a background chapter on elementary number theory and algebra. It then moves on to algorithms, with each chapter in this section dedicated to a single topic and often illustrated with simple cryptographic applic

  4. Brown's transport up to third order aberration by artificial intelligence

    Brown's TRANSPORT is a first and second order matrix multiplication computer program intended for the design of accelerator beam transport systems, neglecting the third order aberration. Recently a new method was developed to derive analytically any order aberration coefficients of general charged particle optic system, applicable to any practical systems, such as accelerators, electron microscopes, lithographs, including those unknown systems yet to be invented. An artificial intelligence program in Turbo Prolog was implemented on IBM-PC 286 or 386 machine to generate automatically the analytical expression of any order aberration coefficients of general charged particle optic system. Based on this new method and technique, Brown's TRANSPORT is extended beyond the second order aberration effect by artificial intelligence, outputting automatically all the analytical expressions up to the third order aberration coefficients

  5. Chromosome aberration analysis based on a beta-binomial distribution

    Analyses carried out here generalized on earlier studies of chromosomal aberrations in the populations of Hiroshima and Nagasaki, by allowing extra-binomial variation in aberrant cell counts corresponding to within-subject correlations in cell aberrations. Strong within-subject correlations were detected with corresponding standard errors for the average number of aberrant cells that were often substantially larger than was previously assumed. The extra-binomial variation is accomodated in the analysis in the present report, as described in the section on dose-response models, by using a beta-binomial (B-B) variance structure. It is emphasized that we have generally satisfactory agreement between the observed and the B-B fitted frequencies by city-dose category. The chromosomal aberration data considered here are not extensive enough to allow a precise discrimination between competing dose-response models. A quadratic gamma ray and linear neutron model, however, most closely fits the chromosome data. (author)

  6. Brown's TRANSPORT up to third order aberration by artificial intelligence

    Brown's TRANSPORT is a first and second order matrix multiplication computer program intended for the design of accelerator beam transport systems, neglecting the third order aberration. Recently a new method was developed to derive analytically any order aberration coefficients of general charged particle optic system, applicable to any practical systems, such as accelerators, electron microscopes, lithographs, etc., including those unknown systems yet to be invented. An artificial intelligence program in Turbo Prolog was implemented on IBM-PC 286 or 386 machine to generate automatically the analytical expression of any order aberration coefficients of general charged particle optic system. Based on this new method and technique, Brown's TRANSPORT is extended beyond the second order aberration effects by artificial intelligence, outputing automatically all the analytical expressions up to the third order aberration coefficients

  7. Self-correcting Multigrid Solver

    Jerome L.V. Lewandowski

    2004-06-29

    A new multigrid algorithm based on the method of self-correction for the solution of elliptic problems is described. The method exploits information contained in the residual to dynamically modify the source term (right-hand side) of the elliptic problem. It is shown that the self-correcting solver is more efficient at damping the short wavelength modes of the algebraic error than its standard equivalent. When used in conjunction with a multigrid method, the resulting solver displays an improved convergence rate with no additional computational work.

  8. An unusual case of left aberrant innominate artery with right aortic arch: evaluation with high-resolution CT

    Calcagni, Giulio [University Rene Descartes-Paris 5, Department of Pediatric Cardiology, Hopital Necker Enfants Malades, Paris (France); Gesualdo, Francesco; Brunelle, Francis; Ou, Phalla [University Rene Descartes-Paris 5, Department of Pediatric Radiology, Hopital Necker Enfants Malades, Paris Cedex 15 (France)

    2008-01-15

    A left aberrant innominate (brachiocephalic) artery is an angiographically well-known entity that may cause tracheal compression. We report a male newborn who was admitted for further investigation of a prenatally suspected major vessel anomaly. High-resolution CT was used to completely assess the abnormal anatomy and the relationship with the airway, as well as to guide the surgical approach for its correction. (orig.)

  9. An x-ray photoemission electron microscope using an electron mirror aberration corrector for the study of complex materials

    A new ultrahigh-resolution photoemission electron microscope called PEEM3 is being developed at the advanced light source (ALS). An electron mirror combined with a sophisticated magnetic beam separator is used to provide simultaneous correction of spherical and chromatic aberrations. Installed on an elliptically polarized undulator beamline, PEEM3 will be operated with very high spatial resolution and high flux to study the composition, structure, electric and magnetic properties of complex materials

  10. Formal verification of a deadlock detection algorithm

    Verbeek, Freek; 10.4204/EPTCS.70.8

    2011-01-01

    Deadlock detection is a challenging issue in the analysis and design of on-chip networks. We have designed an algorithm to detect deadlocks automatically in on-chip networks with wormhole switching. The algorithm has been specified and proven correct in ACL2. To enable a top-down proof methodology, some parts of the algorithm have been left unimplemented. For these parts, the ACL2 specification contains constrained functions introduced with defun-sk. We used single-threaded objects to represent the data structures used by the algorithm. In this paper, we present details on the proof of correctness of the algorithm. The process of formal verification was crucial to get the algorithm flawless. Our ultimate objective is to have an efficient executable, and formally proven correct implementation of the algorithm running in ACL2.

  11. Error Bit Correction of ECC Attack Based on Grover Quantum Intermediate Encounter Search Algorithm%基于Grover量子中间相遇搜索算法的ECC攻击错误bit的修正

    贾徽徽; 王潮; 顾健; 陆臻

    2016-01-01

    The existing error bit in the side channel attacks of ECC is difficult to avoid, and can’t be modiifed quickly. In this paper, a new search algorithm based on the Grover quantum search algorithm is proposed, which combines the Grover quantum search algorithm and the meet in the middle attack, and applies it to the side channel attack for ECC. The algorithm can solve the key problem ofn which hasM error bit inO steps. Compared with classical search algorithm, the computational complexity is greatly reduced. The analysis said that the success rate of modifying ECC attack error bit is 1, and the algorithm can effectively reduce the computational complexity.%在现有的针对ECC的侧信道攻击中,密钥出现错误bit难以避免,且无法快速修正。文章将Grover量子搜索算法和中间相遇攻击相结合,提出了一种新的搜索算法——Grover量子中间相遇搜索算法,并将其应用于针对ECC的侧信道攻击中。该算法可以在O规模为N且存在M个错误bit的密钥,与传统搜索算法的计算复杂度O(N M+1)相比较,计算复杂度大幅度降低。通过对算法进行分析表明,该方法能够以成功率1修正ECC攻击中出现的错误bit。

  12. Track structure based modelling of chromosome aberrations after photon and alpha-particle irradiation.

    Friedland, Werner; Kundrát, Pavel

    2013-08-30

    A computational model of radiation-induced chromosome aberrations in human cells within the PARTRAC Monte Carlo simulation framework is presented. The model starts from radiation-induced DNA damage assessed by overlapping radiation track structures with multi-scale DNA and chromatin models, ranging from DNA double-helix in atomic resolution to chromatin fibre loops, heterochromatic and euchromatic regions, and chromosome territories. The repair of DNA double-strand breaks via non-homologous end-joining is followed. Initial spatial distribution and complexity, diffusive motion, enzymatic processing, synapsis and ligation of individual DNA ends from the breaks are simulated. To enable scoring of different chromosome aberration types resulting from improper joining of DNA fragments, the repair module has been complemented by tracking the chromosome origin of the ligated fragments and the positions of centromeres. The modelled motion of DNA ends has sub-diffusive characteristics and corresponds to measured chromatin mobility within time-scales of a few hours. The calculated formation of dicentrics after photon and α-particle irradiation in human fibroblasts is compared to experimental data (Cornforth et al., 2002, Radiat Res 158, 43). The predicted yields of dicentrics overestimate the measurements by factors of five for γ-rays and two for α-particle irradiation. Nevertheless, the observed relative dependence on radiation dose is correctly reproduced. Calculated yields and size distributions of other aberration types are discussed. The present work represents a first mechanistic approach to chromosome aberrations and their kinetics, combining full track structure simulations with detailed models of chromatin and accounting for the kinetics of DNA repair. PMID:23811166

  13. Using pattern classification to measure adaptation to the orientation of high order aberrations.

    Lucie Sawides

    Full Text Available BACKGROUND: The image formed by the eye's optics is blurred by the ocular aberrations, specific to each eye. Recent studies demonstrated that the eye is adapted to the level of blur produced by the high order aberrations (HOA. We examined whether visual coding is also adapted to the orientation of the natural HOA of the eye. METHODS AND FINDINGS: Judgments of perceived blur were measured in 5 subjects in a psychophysical procedure inspired by the "Classification Images" technique. Subjects were presented 500 pairs of images, artificially blurred with HOA from 100 real eyes (i.e. different orientations, with total blur level adjusted to match the subject's natural blur. Subjects selected the image that appeared best focused in each random pair, in a 6-choice ranked response. Images were presented through Adaptive Optics correction of the subject's aberrations. The images selected as best focused were identified as positive, the other as negative responses. The highest classified positive responses correlated more with the subject's Point Spread Function, PSF, (r = 0.47 on average than the negative (r = 0.34 and the difference was significant for all subjects (p<0.02. Using the orientation of the best fitting ellipse of angularly averaged integrated PSF intensities (weighted by the subject's responses we found that in 4 subjects the positive PSF response was close to the subject's natural PSF orientation (within 21 degrees on average whereas the negative PSF response was almost perpendicularly oriented to the natural PSF (at 76 degrees on average. CONCLUSIONS: The Classification-Images inspired method is very powerful in identifying the internally coded blur of subjects. The consistent bias of the Positive PSFs towards the natural PSF in most subjects indicates that the internal code of blur appears rather specific to each subject's high order aberrations and reveals that the calibration mechanisms for normalizing blur also operate using

  14. Bone sonometry: reducing phase aberration to improve estimates of broadband ultrasonic attenuation.

    Bauer, Adam Q; Anderson, Christian C; Holland, Mark R; Miller, James G

    2009-01-01

    Previous studies suggest that phase cancellation at the receiving transducer can result in the overestimation of the frequency dependent ultrasonic attenuation of bone, a quantity that has been shown to correlate with bone mineral density and ultimately with osteoporotic fracture risk. Evidence supporting this interpretation is provided by phase insensitive processing of the data, which appear to reduce the apparent overestimates of attenuation. The present study was designed to clarify the components underlying phase aberration artifacts in such through-transmission measurements by conducting systematic studies of the simplest possible test objects capable of introducing phase aberration. Experimental results are presented for a Lexan phantom over the frequency range 300-700 kHz and a Plexiglas phantom over the 3-7 MHz range. Both phantoms were flat and parallel plates featuring a step discontinuity milled into one of their initially flat sides. The through-transmitted signals were received by a 0.6 mm diameter membrane hydrophone that was raster scanned over a grid coaxial with the transmitting transducer. Signals received by the pseudoarray were processed offline to emulate phase sensitive and phase insensitive receivers with different aperture diameters. The data processed phase sensitively were focused to demonstrate the results of planar, geometrical, and correlation-based aberration correction methods. Results are presented illustrating the relative roles of interference in the ultrasonic field and phase cancellation at the receiving transducer in producing phase aberration artifacts. It was found that artifacts due to phase cancellation or interference can only be minimized with phase insensitive summation techniques by choosing an appropriately large receiving aperture. Data also suggest the potentially confounding role of time-and frequency-domain artifacts on ultrasonic measurements and illustrate the advantages of two-dimensional receiving arrays in

  15. Wavelet-based denoising of the Fourier metric in real-time wavefront correction for single molecule localization microscopy

    Tehrani, Kayvan Forouhesh; Mortensen, Luke J.; Kner, Peter

    2016-03-01

    Wavefront sensorless schemes for correction of aberrations induced by biological specimens require a time invariant property of an image as a measure of fitness. Image intensity cannot be used as a metric for Single Molecule Localization (SML) microscopy because the intensity of blinking fluorophores follows exponential statistics. Therefore a robust intensity-independent metric is required. We previously reported a Fourier Metric (FM) that is relatively intensity independent. The Fourier metric has been successfully tested on two machine learning algorithms, a Genetic Algorithm and Particle Swarm Optimization, for wavefront correction about 50 μm deep inside the Central Nervous System (CNS) of Drosophila. However, since the spatial frequencies that need to be optimized fall into regions of the Optical Transfer Function (OTF) that are more susceptible to noise, adding a level of denoising can improve performance. Here we present wavelet-based approaches to lower the noise level and produce a more consistent metric. We compare performance of different wavelets such as Daubechies, Bi-Orthogonal, and reverse Bi-orthogonal of different degrees and orders for pre-processing of images.

  16. Total algorithms

    Tel, G.

    1993-01-01

    We define the notion of total algorithms for networks of processes. A total algorithm enforces that a "decision" is taken by a subset of the processes, and that participation of all processes is required to reach this decision. Total algorithms are an important building block in the design of distri

  17. Chromosome aberrations in solid tumors have a stochastic nature

    Castro, Mauro A.A. [Departamento de Bioquimica, Universidade Federal do Rio Grande do Sul, Rua Ramiro Barcelos 2600-anexo, Porto Alegre 90035-003 (Brazil) and Departamento de Medicina Interna, Hospital de Clinicas de Porto Alegre, Universidade Federal do Rio Grande do Sul, Rua Ramiro Barcelos 2350, Porto Alegre 90035-903 (Brazil) and Instituto de Fisica, Universidade Federal do Rio Grande do Sul, Av. Bento Goncalves 9500, Porto Alegre 91501-970 (Brazil) and Universidade Luterana do Brasil, Rua Miguel Tostes 101, Canoas 92420-280 (Brazil)]. E-mail: mauro@ufrgs.br; Onsten, Tor G.H. [Departamento de Medicina Interna, Hospital de Clinicas de Porto Alegre, Universidade Federal do Rio Grande do Sul, Rua Ramiro Barcelos 2350, Porto Alegre 90035-903 (Brazil); Universidade Luterana do Brasil, Rua Miguel Tostes 101, Canoas 92420-280 (Brazil); Moreira, Jose C.F. [Departamento de Bioquimica, Universidade Federal do Rio Grande do Sul, Rua Ramiro Barcelos 2600-anexo, Porto Alegre 90035-003 (Brazil); Almeida, Rita M.C. de [Instituto de Fisica, Universidade Federal do Rio Grande do Sul, Av. Bento Goncalves 9500, Porto Alegre 91501-970 (Brazil)

    2006-08-30

    An important question nowadays is whether chromosome aberrations are random events or arise from an internal deterministic mechanism, which leads to the delicate task of quantifying the degree of randomness. For this purpose, we have defined several Shannon information functions to evaluate disorder inside a tumor and between tumors of the same kind. We have considered 79 different kinds of solid tumors with 30 or more karyotypes retrieved from the Mitelman Database of Chromosome Aberrations in Cancer. The Kaplan-Meier cumulative survival was also obtained for each solid tumor type in order to correlate data with tumor malignance. The results here show that aberration spread is specific for each tumor type, with high degree of diversity for those tumor types with worst survival indices. Those tumor types with preferential variants (e.g. high proportion of a given karyotype) have shown better survival statistics, indicating that aberration recurrence is a good prognosis. Indeed, global spread of both numerical and structural abnormalities demonstrates the stochastic nature of chromosome aberrations by setting a signature of randomness associated to the production of disorder. These results also indicate that tumor malignancy correlates not only with karyotypic diversity taken from different tumor types but also taken from single tumors. Therefore, by quantifying aberration spread, we could confront diverse models and verify which of them points to the most likely outcome. Our results suggest that the generating process of chromosome aberrations is neither deterministic nor totally random, but produces variations that are distributed between these two boundaries.

  18. An evaluation by laser Doppler anemometry of the correction algorithm based on Kaimal co-spectra for high frequency losses of EC flux measurements of CH4 and N2O

    Kroon, P.S.; Hensen, A. [Energy research Centre of the Netherlands ECN, Department of Air Quality and Climate Change, Westerduinweg 3, 1755 LE Petten (Netherlands); Schuitmaker, A.; Jonker, H.J.J.; Tummers, M.J. [Delft University of Technology, Department of Multi-Scale Physics, Research Group Clouds, Climate and Air Quality, Lorentzweg 1, 2628 CJ Delft (Netherlands); Bosveld, F.C. [Royal Dutch Meteorological Institute KNMI, Section Atmospheric Research, Wilhelminalaan 10, 3732 GK De Bilt (Netherlands)

    2010-08-15

    Eddy covariance (EC) technique is often used to determine greenhouse gas exchange at the earth's surface. In general, the instruments involved have a limited high frequency response which reduces the ability to detect the contribution to the flux of small eddies and in addition sensor separation gives high frequency losses. These missing contributions cause an EC flux underestimation which increases for higher values of the stability parameter z/L. Corrections can be performed based on the (empirical) Kaimal co-spectra; however, these were derived using instruments with a limited frequency response. In this study, the validity of the Kaimal spectrum during stable atmospheric conditions is assessed using laser Doppler anemometry (LDA) measurements of the vertical wind velocity at 1 m height during several stable nights at Cabauw in the Netherlands. LDA provides a means to determine the entire turbulent energy spectrum, i.e., from the production scale down to the dissipation scale. Since the measured spectra are found to be in good agreement with the Kaimal spectra, we assume that the Kaimal co-spectra are valid as well. Next, the effect of high frequency correction based on Kaimal co-spectra is assessed using 1 month of EC flux data of CH4 and N2O measured by quantum cascade laser (QCL) spectrometry at Reeuwijk in the Netherlands. After correction, the cumulative emissions increased about 15% for both gases. This underlines the importance of correcting for high frequency losses.

  19. Aberrant DNA methylation in cloned ovine embryos

    LIU Lei; HOU Jian; LEI TingHua; BAI JiaHua; GUAN Hong; AN XiaoRong

    2008-01-01

    By using the approach of immunofluorescence staining with an antibody against 5-methylcytosine (5MeC), the present study detected the DNA methylation patterns of cloned ovine embryos. The em-bryos derived from in vitro fertilization were also examined for reference purpose. The results showed that: (1) during the pre-implantation development, cloned embryos displayed a similar demethylation profile to the fertilized embryos; that is, the methylation level decreased to the lowest at 8-cell stage, and then increased again at morulae stage. However, methylation level was obviously higher in cloned embryos than in stage-matched fertilized embryos, especially at 8-cell stage and afterwards; (2) at blastocyst stage, the methylation pattern in cloned embryos was different from that in fertilized em-bryos. In cloned blastocyst, inner cell mass (ICM) exhibited a comparable level to trophectoderm cells (TE), while in in-vitro fertilized blastocyst the methylation level of ICM was lower than that of TE, which is not consistent with that reported by other authors. These results indicate that DNA methylation is abnormally reprogrammed in cloned embryos, implying that aberrant DNA methylation reprogramming may be one of the factors causing cloned embryos developmental failure.

  20. Aberrant glycosylation associated with enzymes as cancer biomarkers

    Meany Danni L

    2011-06-01

    Full Text Available Abstract Background One of the new roles for enzymes in personalized medicine builds on a rational approach to cancer biomarker discovery using enzyme-associated aberrant glycosylation. A hallmark of cancer, aberrant glycosylation is associated with differential expressions of enzymes such as glycosyltransferase and glycosidases. The aberrant expressions of the enzymes in turn cause cancer cells to produce glycoproteins with specific cancer-associated aberrations in glycan structures. Content In this review we provide examples of cancer biomarker discovery using aberrant glycosylation in three areas. First, changes in glycosylation machinery such as glycosyltransferases/glycosidases could be used as cancer biomarkers. Second, most of the clinically useful cancer biomarkers are glycoproteins. Discovery of specific cancer-associated aberrations in glycan structures of these existing biomarkers could improve their cancer specificity, such as the discovery of AFP-L3, fucosylated glycoforms of AFP. Third, cancer-associated aberrations in glycan structures provide a compelling rationale for discovering new biomarkers using glycomic and glycoproteomic technologies. Summary As a hallmark of cancer, aberrant glycosylation allows for the rational design of biomarker discovery efforts. But more important, we need to translate these biomarkers from discovery to clinical diagnostics using good strategies, such as the lessons learned from translating the biomarkers discovered using proteomic technologies to OVA 1, the first FDA-cleared In Vitro Diagnostic Multivariate Index Assay (IVDMIA. These lessons, providing important guidance in current efforts in biomarker discovery and translation, are applicable to the discovery of aberrant glycosylation associated with enzymes as cancer biomarkers as well.

  1. Atmospheric correction of CBERS CCD images with MODIS data

    LI Junsheng; ZHANG Bing; CHEN Zhengchao; SHEN Qian

    2006-01-01

    China Brazil Earth Resource Satellite (CBERS) CCD images have much potential for inland water environmental monitoring. However, their atmospheric accuracy correction can affect their quantitative applications. This paper contains an atmospheric correction algorithm for CBERS CCD images with MODIS data from the same day, the use of which improves the atmospheric correction algorithm of ocean color remote sensing developed by Gordon (1993, 1994) and makes it applicable to inland waters. The improved algorithm retrieves atmospheric parameters from MODIS data and uses them to perform the atmospheric correction of CBERS CCD images. Experimental results show that the atmospheric correction algorithm of CBERS CCD images assisted by MODIS data is reliable. Furthermore, MODIS data can be freely obtained on a daily basis, making the algorithm developed in this paper useful for environmental monitoring of inland waters.

  2. Blind restoration method of three-dimensional microscope image based on RL algorithm

    Yao, Jin-li; Tian, Si; Wang, Xiang-rong; Wang, Jing-li

    2013-08-01

    Thin specimens of biological tissue appear three dimensional transparent under a microscope. The optic slice images can be captured by moving the focal planes at the different locations of the specimen. The captured image has low resolution due to the influence of the out-of-focus information comes from the planes adjacent to the local plane. Using traditional methods can remove the blur in the images at a certain degree, but it needs to know the point spread function (PSF) of the imaging system accurately. The accuracy degree of PSF influences the restoration result greatly. In fact, it is difficult to obtain the accurate PSF of the imaging system. In order to restore the original appearance of the specimen under the conditions of the imaging system parameters are unknown or there is noise and spherical aberration in the system, a blind restoration methods of three-dimensional microscope based on the R-L algorithm is proposed in this paper. On the basis of the exhaustive study of the two-dimension R-L algorithm, according to the theory of the microscopy imaging and the wavelet transform denoising pretreatment, we expand the R-L algorithm to three-dimension space. It is a nonlinear restoration method with the maximum entropy constraint. The method doesn't need to know the PSF of the microscopy imaging system precisely to recover the blur image. The image and PSF converge to the optimum solutions by many alterative iterations and corrections. The matlab simulation and experiments results show that the expansion algorithm is better in visual indicators, peak signal to noise ratio and improved signal to noise ratio when compared with the PML algorithm, and the proposed algorithm can suppress noise, restore more details of target, increase image resolution.

  3. Differential algebraic method for aberration analysis of typical electrostatic lenses

    In this paper up to fifth-order geometric and third-order chromatic aberration coefficients of typical electrostatic lenses are calculated by means of the charged particle optics code, COSY INFINITY, based on the differential algebraic (DA) method. A two-tube immersion lens and a symmetric einzel lens have been chosen as two examples, whose axial potential distributions are numerically calculated by a FORTRAN program using the finite difference method. The DA results are in good agreement with those evaluated by the aberration integrals in electron optics. The DA method presented here can easily be extended to aberration analysis of other numerically computed electron lenses, including magnetic lenses

  4. Quantum error correction for beginners

    Quantum error correction (QEC) and fault-tolerant quantum computation represent one of the most vital theoretical aspects of quantum information processing. It was well known from the early developments of this exciting field that the fragility of coherent quantum systems would be a catastrophic obstacle to the development of large-scale quantum computers. The introduction of quantum error correction in 1995 showed that active techniques could be employed to mitigate this fatal problem. However, quantum error correction and fault-tolerant computation is now a much larger field and many new codes, techniques, and methodologies have been developed to implement error correction for large-scale quantum algorithms. In response, we have attempted to summarize the basic aspects of quantum error correction and fault-tolerance, not as a detailed guide, but rather as a basic introduction. The development in this area has been so pronounced that many in the field of quantum information, specifically researchers who are new to quantum information or people focused on the many other important issues in quantum computation, have found it difficult to keep up with the general formalisms and methodologies employed in this area. Rather than introducing these concepts from a rigorous mathematical and computer science framework, we instead examine error correction and fault-tolerance largely through detailed examples, which are more relevant to experimentalists today and in the near future. (review article)

  5. Aberrations of Genetic Material as Biomarkers of Ionizing Radiation Effects

    Milacic, S.

    2004-07-01

    Ionizing radiation is the most powerful mutagen in environmental and working conditions. The result of genotoxic effect of radiation is the development of chromosome aberrations. The structural chromosome aberrations in peripheral blood lymphocytes are dicentric, ring, acentric fragment. The observation of chromosome aberration frequency in lymphocyte karyotype is the conclusive method to assess the absorbed dose of ionizing radiation. Our study compared the incidence of chromosome aberrations in occupationally exposed healthy medical workers and in non-exposed healthy population. We analyzed the effect of working place, dose by thermo luminescence personal dosimeter (TLD), duration of occupational exposure (DOE) and age to the sum of aberrant cells and aberrations. four-year study included 462 subjects, mean-aged 42.3 years, who were occupational exposed to ionizing radiation and 95 subjects, mean-aged 35,2 years, who were not exposed to ionizing radiation, during the same time period and from the same territory. All of them possess thermo luminescence personal dosimeter (TLD) which is read by scanner for thermo luminescence dosimeters. Modified Moorheard's micro method for peripheral blood lymphocytes and conventional cytogenetic technique of chromosome aberration analysis were used for analysis of chromosome aberrations. Stained preparations (Giemsa) are observed in immersion by light microscope. The karyotype of 200 lymphocytes in metaphase is analyzed the most characteristic aberration: dicentric, then the ring and acentric fragments. The increased incidence of chromosome aberrations was found to tbe 21.6% in the exposed group and 2.1% in the controls, while the findings within the limits (non-specific chromosome lesions-gaps breaks, elongations, and exchanges) were equal in both groups (22%). Among occupationally exposed medical workers, the highest incidence was found in nuclear medicine workers (42.6%), then in orthopedists (27.08%). There is highly

  6. Prospects for versatile phase manipulation in the TEM : beyond aberration correction

    Guzzinati, Giulio; Clark, Laura; Béché, Armand; Juchtmans, Roeland; Boxem, van, Tj.; Mazilu, Michael; Verbeeck, Jo

    2015-01-01

    Abstract: In this paper we explore the desirability of a transmission electron microscope in which the phase of the electron wave can be freely controlled. We discuss different existing methods to manipulate the phase of the electron wave and their limitations. We show how with the help of current techniques the electron wave can already be crafted into specific classes of waves each having their own peculiar properties. Assuming a versatile phase modulation device is feasible, we explore pos...

  7. Sub-Angstrom resolution with aberration-corrected TEM: Present and future

    O' Keefe, Michael A.

    2004-07-01

    Resolution is the ability to determine if a feature in an image represents two objects rather than one. Rayleigh's resolution criterion, an accepted standard in optics, was derived as a means for judging when two sources of light (stars) were distinguishable from a single source. In microscopy, resolution is the ability to determine if detail in an image represents distinct (separated) objects. In high-resolution TEM, these objects are atoms. Resolution of |d| is achieved when atoms separated by a (projected) distance |d| can be perceived as separate objects. TEM images are able to depict projected atom columns because they are interference patterns of the directly transmitted electron beam with beams diffracted from the specimen imaged under well-established conditions.

  8. Imaging screw dislocations at atomic resolution by aberration-corrected electron optical sectioning

    Yang, H.; Lozano, J. G.; Pennycook, T. J.; Jones, L.; Hirsch, P. B.; Nellist, P. D.

    2015-06-01

    Screw dislocations play an important role in materials' mechanical, electrical and optical properties. However, imaging the atomic displacements in screw dislocations remains challenging. Although advanced electron microscopy techniques have allowed atomic-scale characterization of edge dislocations from the conventional end-on view, for screw dislocations, the atoms are predominantly displaced parallel to the dislocation line, and therefore the screw displacements are parallel to the electron beam and become invisible when viewed end-on. Here we show that screw displacements can be imaged directly with the dislocation lying in a plane transverse to the electron beam by optical sectioning using annular dark field imaging in a scanning transmission electron microscope. Applying this technique to a mixed [a+c] dislocation in GaN allows direct imaging of a screw dissociation with a 1.65-nm dissociation distance, thereby demonstrating a new method for characterizing dislocation core structures.

  9. Therapeutic efficacy by targeting correction of Notch1-induced aberrants in uveal tumors.

    Xiaolin Huang

    Full Text Available There is a need for more effective treatments for uveal melanoma. The recombinant oncolytic adenovirus H101 replicates specifically in p53-depleted tumor cells, and has been approved for use by the Chinese State Food and Drug Administration. However, this treatment is associated with subsequent remission. Transfection of uveal melanoma cells with a small interfering RNA against Notch1 (siNotch1 effectively suppressed Notch1 expression, resulting in significant cell growth inhibition when combined with H101 treatment. Combined treatment with siNotch1 and H101 (H101-Notch1-siRNA greatly enhanced apoptosis and cell cycle arrest in vitro as compared to treatment with H101 or siNotch1 alone. For in vivo treatments, the combined treatment of siNotch1 and H101 showed remarkable tumor growth inhibition and prolonged mouse survival in the OCM1 xenograft model. We predict that Notch pathway deregulation could be a feature of uveal melanoma, and could be a therapeutic target, especially if p53 is concurrently targeted.

  10. The Compact Hyperspectral Aberration-corrected Platform (CHAP), an instrument for microspacecraft. Project

    National Aeronautics and Space Administration — In-situ analysis of solar system bodies plays a crucial role in understanding the evolution of our planet, setting the stage for life's origins. As has been...

  11. Chromatic aberration correction and deconvolution for UV sensitive imaging of fluorescent sterols in cytoplasmic lipid droplets

    Wüstner, Daniel; Faergeman, Nils J

    2008-01-01

    Intrinsically fluorescent sterols, like dehydroergosterol (DHE), mimic cholesterol closely and are therefore suitable to determine cholesterol transport by fluorescence microscopy. Disadvantages of DHE are its low quantum yield, rapid bleaching, and the fact that its excitation and emission is in...

  12. Dynamic Correction of Higher Order Deflection Aberrations in the Environmental SEM

    Oral, Martin; Neděla, Vilém

    Brno: Institute of Scientific Instruments AS CR, v. v. i, 2014. s. 3. ISBN 978-80-87441-11-4. [International Conference on Charged Parrticle Optics /9./. 31.08.2014-05.09.2014, Brno] R&D Projects: GA ČR(CZ) GA14-22777S Institutional support: RVO:68081731 Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering

  13. Automatic Contextual Text Correction Using The Linguistic Habits Graph Lhg

    Marcin Gadamer; Adrian Horzyk

    2009-01-01

    Automatic text correction is an essential problem of today text processors and editors. Thispaper introduces a novel algorithm for automation of contextual text correction using a LinguisticHabit Graph (LHG) also introduced in this paper. A specialist internet crawler hasbeen constructed for searching through web sites in order to build a Linguistic Habit Graphafter text corpuses gathered in polish web sites. The achieved correction results on a basis ofthis algorithm using this LHG were comp...

  14. Implementation of Cryptographic Algorithm on FPGA

    Prof. S. Venkateswarlu; Deepa G.M; G. Sriteja

    2013-01-01

    Advanced Encryption Standard (AES), a Federal Information Processing Standard (FIPS), is anapproved cryptographic algorithm that is used to protect electronic data. The AES can be programmed insoftware or built with hardware. The paper presents a hardware implementation of the AES algorithm onFPGA. The algorithm was implemented in FPGA using Spartan 3E starter kit and Xilinx ISE developmentsuite. The purpose of this attempt was to test the correctness of the implemented algorithm and to gaine...

  15. Comparative study of pressure-correction and Godunov-type schemes on unsteady compressible cases

    Archambeau, Frédéric; Hérard, Jean-Marc; Laviéville, Jérôme

    2009-01-01

    Two pressure-correction algorithms are studied and compared to an approximate Godunov scheme on unsteady compressible cases. The first pressure-correction algorithm sequentially solves the equations for momentum, mass and enthalpy, with sub-iterations which ensure conservativity. The algorithm also conserves the total enthalpy along a streamline, in a steady flow. The second pressure-correction algorithm sequentially solves the equations for mass, momentum and energy without sub-iteration. Th...

  16. Chromosome aberrations in pesticide-exposed greenhouse workers

    Lander, B F; Knudsen, Lisbeth E.; Gamborg, M O;

    2000-01-01

    OBJECTIVES: The aim of this study was to investigate the possibility of subtoxic exposure to pesticides causing chromosome aberrations in greenhouse workers. METHODS: In a cross-sectional and prospective study design chromosome aberration frequencies in cultured lymphocytes were examined for 116...... greenhouse workers exposed to a complex mixture of almost 50 insecticides, fungicides, and growth regulators and also for 29 nonsmoking, nonpesticide-exposed referents. RESULTS: The preseason frequencies of chromosome aberrations were slightly but not statistically significantly elevated for the greenhouse...... workers when they were compared with the referents. After a summer season of pesticide spraying in the greenhouses, the total frequencies of cells with chromosome aberrations were significantly higher than in the preseason samples (P=0.02) and also higher than for the referents (P=0.05). This finding was...

  17. Electron Optics for Biologists: Physical Origins of Spherical Aberrations

    Geissler, Peter; Zadunaisky, Jose

    1974-01-01

    Reports on the physical origins of spherical aberrations in axially symmetric electrostatic lenses to convey the essentials of electon optics to those who must think critically about the resolution of the electron microscope. (GS)

  18. CT of ruptured aneurysm of aberrant right subclavian artery.

    Vega, A; Ortíz, A; Longo, J M; Pagola, M A

    1987-01-01

    This paper presents the first description of a ruptured aneurysm of an aberrant right subclavian artery. CT clearly demonstrated the vascular malformation as well as the existence of a bilateral hemothorax. PMID:3102065

  19. Lymphocyte chromosome aberrations in partial-body fractionated radiation therapy

    a relationship between lymphocyte chromosome aberration yields which occur in partial-body fractionated radiation therapy and those yields measured in vitro is derived. These calculations are applied to the case of patients undergoing radiation therapy for mammary carcinoma. (author)

  20. Lymphocyte chromosome aberrations in partial-body fractionated radiation therapy

    Ekstrand, K.E.; Dixon, R.L. (Wake Forest Univ., Winston-Salem, NC (USA))

    1982-03-01

    a relationship between lymphocyte chromosome aberration yields which occur in partial-body fractionated radiation therapy and those yields measured in vitro is derived. These calculations are applied to the case of patients undergoing radiation therapy for mammary carcinoma.