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Sample records for 3-d fourier domain

  1. Real-time 3D Fourier-domain optical coherence tomography guided microvascular anastomosis

    Huang, Yong; Ibrahim, Zuhaib; Lee, W. P. A.; Brandacher, Gerald; Kang, Jin U.

    2013-03-01

    Vascular and microvascular anastomosis is considered to be the foundation of plastic and reconstructive surgery, hand surgery, transplant surgery, vascular surgery and cardiac surgery. In the last two decades innovative techniques, such as vascular coupling devices, thermo-reversible poloxamers and suture-less cuff have been introduced. Intra-operative surgical guidance using a surgical imaging modality that provides in-depth view and 3D imaging can improve outcome following both conventional and innovative anastomosis techniques. Optical coherence tomography (OCT) is a noninvasive high-resolution (micron level), high-speed, 3D imaging modality that has been adopted widely in biomedical and clinical applications. In this work we performed a proof-of-concept evaluation study of OCT as an assisted intraoperative and post-operative imaging modality for microvascular anastomosis of rodent femoral vessels. The OCT imaging modality provided lateral resolution of 12 μm and 3.0 μm axial resolution in air and 0.27 volume/s imaging speed, which could provide the surgeon with clearly visualized vessel lumen wall and suture needle position relative to the vessel during intraoperative imaging. Graphics processing unit (GPU) accelerated phase-resolved Doppler OCT (PRDOCT) imaging of the surgical site was performed as a post-operative evaluation of the anastomosed vessels and to visualize the blood flow and thrombus formation. This information could help surgeons improve surgical precision in this highly challenging anastomosis of rodent vessels with diameter less than 0.5 mm. Our imaging modality could not only detect accidental suture through the back wall of lumen but also promptly diagnose and predict thrombosis immediately after reperfusion. Hence, real-time OCT can assist in decision-making process intra-operatively and avoid post-operative complications.

  2. 3-D Printed Slit Nozzles for Fourier Transform Microwave Spectroscopy

    Dewberry, Chris; Mackenzie, Becca; Green, Susan; Leopold, Ken

    2015-06-01

    3-D printing is a new technology whose applications are only beginning to be explored. In this report, we describe the application of 3-D printing to the facile design and construction of supersonic nozzles. The efficacy of a variety of designs is assessed by examining rotational spectra OCS and Ar-OCS using a Fourier transform microwave spectrometer with tandem cavity and chirped-pulse capabilities. This work focuses primarily on the use of slit nozzles but other designs have been tested as well. New nozzles can be created for 0.50 or less each, and the ease and low cost should facilitate the optimization of nozzle performance (e.g., jet temperature or cluster size distribution) for the needs of any particular experiment.

  3. Subharmonic Fourier domain mode locking.

    Eigenwillig, Christoph M; Wieser, Wolfgang; Biedermann, Benjamin R; Huber, Robert

    2009-03-15

    We demonstrate a subharmonically Fourier domain mode-locked wavelength-swept laser source with a substantially reduced cavity fiber length. In contrast to a standard Fourier domain mode-locked configuration, light is recirculated repetitively in the delay line with the optical bandpass filter used as switch. The laser has a fundamental optical round trip frequency of 285 kHz and can be operated at integer fractions thereof (subharmonics). Sweep ranges up to 95 nm full width centred at 1317 nm are achieved at the 1/5th subharmonic. A maximum sensitivity of 116 dB and an axial resolution of 12 microm in air are measured at an average sweep power of 12 mW. A sensitivity roll-off of 11 dB over 4 mm and 25 dB over 10 mm is observed and optical coherence tomography imaging is demonstrated. Besides the advantage of a reduced fiber length, subharmonic Fourier domain mode locking (shFDML) enables simple scaling of the sweep speed by extracting light from the delay part of the resonator. A sweep rate of 570 kHz is achieved. Characteristic features of shFDML operation, such as power leakage during fly-back and cw breakthrough, are investigated. PMID:19282912

  4. Oversampling analysis in fractional Fourier domain

    ZHANG Feng; TAO Ran; WANG Yue

    2009-01-01

    Oversampling is widely used in practical applications of digital signal processing. As the fractional Fourier transform has been developed and applied in signal processing fields, it is necessary to consider the oversampling theorem in the fractional Fourier domain. In this paper, the oversampling theorem in the fractional Fourier domain is analyzed. The fractional Fourier spectral relation between the original oversampled sequence and its subsequences is derived first, and then the expression for exact reconstruction of the missing samples in terms of the subsequences is obtained. Moreover, by taking a chirp signal as an example, it is shown that, reconstruction of the missing samples in the oversampled signal Is suitable in the fractional Fourier domain for the signal whose time-frequency distribution has the minimum support in the fractional Fourier domain.

  5. Fourier phase in Fourier-domain optical coherence tomography

    Uttam, Shikhar; Liu, Yang

    2015-01-01

    Phase of an electromagnetic wave propagating through a sample-of-interest is well understood in the context of quantitative phase imaging in transmission-mode microscopy. In the past decade, Fourier-domain optical coherence tomography has been used to extend quantitative phase imaging to the reflection-mode. Unlike transmission-mode electromagnetic phase, however, the origin and characteristics of reflection-mode Fourier phase are poorly understood, especially in samples with a slowly varying...

  6. Spectral/Fourier Domain Optical Coherence Tomography

    de Boer, Johannes F.

    Optical coherence tomography is a low-coherence interferometric method for imaging of biological tissue [1, 2]. For more than a decade after its inception between 1988 and 1991, the dominant implementation has been time domain OCT (TD-OCT), in which the length of a reference arm is rapidly scanned. The first spectral or Fourier domain OCT (SD/FD-OCT) implementation was reported in 1995 [3]. In SD-OCT the reference arm is kept stationary, and the depth information is obtained by a Fourier transform of the spectrally resolved interference fringes in the detection arm of a Michelson interferometer. This approach has provided a significant advantage in signal-to-noise ratio (SNR), which despite reports as early as 1997 [4, 5] has taken about half a decade to be recognized fully by the OCT community in 2003 [6-8]. The first demonstration of SD-OCT for in vivo retinal imaging in 2002 [9] was followed by a full realization of the sensitivity advantage by video rate in vivo retinal imaging [10], including high-speed 3-D volumetric imaging [11], ultrahigh-resolution video rate imaging [12, 13], and Doppler blood flow determination in the human retina [14, 15]. The superior sensitivity of SD-OCT, combined with the lack of need for a fast mechanical scanning mechanism, has opened up the possibility of much faster scanning without loss of image quality and provided a paradigm shift from point sampling to volumetric mapping of biological tissue in vivo. The technology has been particularly promising for ophthalmology [16, 17]. In this chapter, the principles and system design considerations of SD-OCT will be discussed in more detail.

  7. A Tamed 3D Navier-Stokes Equation in Domains

    Zhang, Xicheng

    2008-01-01

    In this paper, we analyze a tamed 3D Navier-Stokes equation in uniform $C^2$-domains (not necessarily bounded), which obeys the scaling invariance principle, and prove the existence and uniqueness of strong solutions to this tamed equation. In particular, if there exists a bounded solution to the classical 3D Navier-Stokes equation, then this solution satisfies our tamed equation. Moreover, the existence of a global attractor for the tamed equation in bounded domains is also proved. As simple...

  8. Photonic crystal biosensor in spatial fourier domain

    Hallynck, Elewout; Bienstman, Peter

    2011-01-01

    We propose a photonic crystal biosensor, operating at a single wavelength, based on analysis of resonant guided modes in the spatial Fourier domain. Sensitivities of 65 degrees per RIU and more have been simulated.

  9. 3D viscous-spring artificial boundary in time domain

    Liu Jingbo; Du Yixin; Du Xiuli; Wang Zhenyu; Wu Jun

    2006-01-01

    After a brief review of studies on artificial boundaries in dynamic soil-structure interaction, a three-dimensional viscous-spring artificial boundary (VSAB) in the time domain is developed in this paper. First, the 3D VSAB equations in the normal and tangential directions are derived based on the elastic wave motion theory. Secondly, a numerical simulation technique of wave motion equations along with the VSAB condition in the time domain is studied. Finally, numerical examples of some classical elastic wave motion problems are presented and the results are compared with the associated theoretical solutions, demonstrating that high precision and adequate stability can be achieved by using the proposed 3D VSAB. The proposed 3D VSAB can be conveniently incorporated in the general finite element program, which is commonly used to study dynamic soil-structure interaction problems.

  10. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  11. Three-dimensional imaging using computer-generated holograms synthesized from 3-D Fourier spectra

    Yatagai, Toyohiko; Miura, Ken-ichi; Sando, Yusuke; Itoh, Masahide [University of Tsukba, Institute of Applied Physics, Tennoudai 1-1-1, Tsukuba, Ibaraki 305-8571 (Japan)], E-mail: yatagai@cc.utsunomiya-u.ac.jp

    2008-11-01

    Computer-generated holograms(CGHs) synthesized from projection images of real existing objects are considered. A series of projection images are recorded both vertically and horizontally with an incoherent light source and a color CCD. According to the principles of computer tomography(CT), the 3-D Fourier spectrum is calculated from several projection images of objects and the Fresnel CGH is synthesized using a part of the 3-D Fourier spectrum. This method has following advantages. At first, no-blur reconstructed images in any direction are obtained owing to two-dimensionally scanning in recording. Secondarily, since not interference fringes but simple projection images of objects are recorded, a coherent light source is not necessary. Moreover, when a color CCD is used in recording, it is easily possible to record and reconstruct colorful objects. Finally, we demonstrate reconstruction of biological objects.

  12. Three-dimensional imaging using computer-generated holograms synthesized from 3-D Fourier spectra

    Computer-generated holograms(CGHs) synthesized from projection images of real existing objects are considered. A series of projection images are recorded both vertically and horizontally with an incoherent light source and a color CCD. According to the principles of computer tomography(CT), the 3-D Fourier spectrum is calculated from several projection images of objects and the Fresnel CGH is synthesized using a part of the 3-D Fourier spectrum. This method has following advantages. At first, no-blur reconstructed images in any direction are obtained owing to two-dimensionally scanning in recording. Secondarily, since not interference fringes but simple projection images of objects are recorded, a coherent light source is not necessary. Moreover, when a color CCD is used in recording, it is easily possible to record and reconstruct colorful objects. Finally, we demonstrate reconstruction of biological objects.

  13. MULTIVARIATE FOURIER SERIES OVER A CLASS OF NON TENSOR-PRODUCT PARTITION DOMAINS

    Jiachang Sun

    2003-01-01

    This paper finds a way to extend the well-known Fourier methods, to so-called n+1directions partition domains in n-dimension. In particular, in 2-D and 3-D cases, westudy Fourier methods over 3-direction parallel hexagon partitions and 4-direction parallelparallelogram dodecahedron partitions, respectively. It has pointed that, the most conceptsand results of Fourier methods on tensor-product case, such as periodicity, orthogonality ofFourier basis system, partial sum of Fourier series and its approximation behavior, can bemoved on the new non tensor-product partition case.

  14. Fully 3D PET image reconstruction using a fourier preconditioned conjugate-gradient algorithm

    Since the data sizes in fully 3D PET imaging are very large, iterative image reconstruction algorithms must converge in very few iterations to be useful. One can improve the convergence rate of the conjugate-gradient (CG) algorithm by incorporating preconditioning operators that approximate the inverse of the Hessian of the objective function. If the 3D cylindrical PET geometry were not truncated at the ends, then the Hessian of the penalized least-squares objective function would be approximately shift-invariant, i.e. G'G would be nearly block-circulant, where G is the system matrix. We propose a Fourier preconditioner based on this shift-invariant approximation to the Hessian. Results show that this preconditioner significantly accelerates the convergence of the CG algorithm with only a small increase in computation

  15. Simulation domain size requirements for elastic response of 3D polycrystalline materials

    Ozturk, Tugce; Stein, Clayton; Pokharel, Reeju; Hefferan, Christopher; Tucker, Harris; Jha, Sushant; John, Reji; Lebensohn, Ricardo A.; Kenesei, Peter; Suter, Robert M.; Rollett, Anthony D.

    2016-01-01

    A fast Fourier transform (FFT) based spectral algorithm is used to compute the full field mechanical response of polycrystalline microstructures. The field distributions in a specific region are used to determine the sensitivity of the method to the number of surrounding grains through quantification of the divergence of the field values from the largest simulation domain, as successively smaller surrounding volumes are included in the simulation. The analysis considers a mapped 3D structure where the location of interest is taken to be a particular pair of surface grains that enclose a small fatigue crack, and synthetically created statistically representative microstructures to further investigate the effect of anisotropy, loading condition, loading direction, and texture. The synthetic structures are generated via DREAM3D and the measured material is a cyclically loaded, Ni-based, low solvus high refractory (LSHR) superalloy that was characterized via 3D high energy x-ray diffraction microscopy (HEDM). Point-wise comparison of distributions in the grain pairs shows that, in order to obtain a Pearson correlation coefficient larger than 99%, the domain must extend to at least the third nearest neighbor. For an elastic FFT calculation, the stress-strain distributions are not sensitive to the shape of the domain. The main result is that convergence can be specified in terms of the number of grains surrounding a region of interest.

  16. Spatial correlation in 3D MIMO channels using fourier coefficients of power spectrums

    Nadeem, Qurrat Ul Ain

    2015-03-01

    In this paper, an exact closed-form expression for the Spatial Correlation Function (SCF) is derived for the standardized three-dimensional (3D) multiple-input multiple-output (MIMO) channel. This novel SCF is developed for a uniform linear array of antennas with non-isotropic antenna patterns. The proposed method resorts to the spherical harmonic expansion (SHE) of plane waves and the trigonometric expansion of Legendre and associated Legendre polynomials to obtain a closed-form expression for the SCF for arbitrary angular distributions and antenna patterns. The resulting expression depends on the underlying angular distributions and antenna patterns through the Fourier Series (FS) coefficients of power azimuth and elevation spectrums. The novelty of the proposed method lies in the SCF being valid for any 3D propagation environment. Numerical results validate the proposed analytical expression and study the impact of angular spreads on the correlation. The derived SCF will help evaluate the performance of correlated 3D MIMO channels in the future. © 2015 IEEE.

  17. 3D Vectorial Time Domain Computational Integrated Photonics

    Kallman, J S; Bond, T C; Koning, J M; Stowell, M L

    2007-02-16

    The design of integrated photonic structures poses considerable challenges. 3D-Time-Domain design tools are fundamental in enabling technologies such as all-optical logic, photonic bandgap sensors, THz imaging, and fast radiation diagnostics. Such technologies are essential to LLNL and WFO sponsors for a broad range of applications: encryption for communications and surveillance sensors (NSA, NAI and IDIV/PAT); high density optical interconnects for high-performance computing (ASCI); high-bandwidth instrumentation for NIF diagnostics; micro-sensor development for weapon miniaturization within the Stockpile Stewardship and DNT programs; and applications within HSO for CBNP detection devices. While there exist a number of photonics simulation tools on the market, they primarily model devices of interest to the communications industry. We saw the need to extend our previous software to match the Laboratory's unique emerging needs. These include modeling novel material effects (such as those of radiation induced carrier concentrations on refractive index) and device configurations (RadTracker bulk optics with radiation induced details, Optical Logic edge emitting lasers with lateral optical inputs). In addition we foresaw significant advantages to expanding our own internal simulation codes: parallel supercomputing could be incorporated from the start, and the simulation source code would be accessible for modification and extension. This work addressed Engineering's Simulation Technology Focus Area, specifically photonics. Problems addressed from the Engineering roadmap of the time included modeling the Auston switch (an important THz source/receiver), modeling Vertical Cavity Surface Emitting Lasers (VCSELs, which had been envisioned as part of fast radiation sensors), and multi-scale modeling of optical systems (for a variety of applications). We proposed to develop novel techniques to numerically solve the 3D multi-scale propagation problem for both the

  18. Beamforming in Short Time Fractional Fourier Domain (FRFD

    Mostafa Rahmani

    2012-09-01

    Full Text Available This study aims to generate a model for the problem of beamforming in fractional Fourier domain, through which a general solution for obtaining weighted beamforming in fractional Fourier domain for different criteria might be delivered. In order to generate this model, a description of fractional delay concept is presented, through which the string vector in fractional Fourier domain is calculated and a model for beamforming in fractional Fourier domain is generated which is similar to that used for obtaining weighted beamforming in time domain for narrow-band signals. To complement our solution, a method for obtaining the optimal fractional domain as well as direction of arrival in optimal fractional Fourier domain.

  19. Direct fourier methods in 3D-reconstruction from cone-beam data

    The problem of 3D-reconstruction is encountered in both medical and industrial applications of X-ray tomography. A method able to utilize a complete set of projections complying with Tuys condition was proposed by Grangeat. His method is mathematically exact and consists of two distinct phases. In phase 1 cone-beam projection data are used to produce the derivative of the radon transform. In phase 2, after interpolation, the radon transform data are used to reconstruct the three-dimensional object function. To a large extent our method is an extension of the Grangeat method. Our aim is to reduce the computational complexity, i.e. to produce a faster method. The most taxing procedure during phase 1 is computation of line-integrals in the detector plane. By applying the direct Fourier method in reverse for this computation, we reduce the complexity of phase 1 from O(N4) to O(N3logN). Phase 2 can be performed either as a straight 3D-reconstruction or as a sequence of two 2D-reconstructions in vertical and horizontal planes, respectively. Direct Fourier methods can be applied for the 2D- and for the 3D-reconstruction, which reduces the complexity of phase 2 from O(N4) to O(N3logN) as well. In both cases, linogram techniques are applied. For 3D-reconstruction the inversion formula contains the second derivative filter instead of the well-known ramp-filter employed in the 2D-case. The derivative filter is more well-behaved than the 2D ramp-filter. This implies that less zeropadding is necessary which brings about a further reduction of the computational efforts. The method has been verified by experiments on simulated data. The image quality is satisfactory and independent of cone-beam angles. For a 5123 volume we estimate that our method is ten times faster than Grangeats method

  20. 3D Image Modelling and Specific Treatments in Orthodontics Domain

    Dionysis Goularas

    2007-01-01

    Full Text Available In this article, we present a 3D specific dental plaster treatment system for orthodontics. From computer tomography scanner images, we propose first a 3D image modelling and reconstruction method of the Mandible and Maxillary based on an adaptive triangulation allowing management of contours meant for the complex topologies. Secondly, we present two specific treatment methods directly achieved on obtained 3D model allowing the automatic correction for the setting in occlusion of the Mandible and the Maxillary, and the teeth segmentation allowing more specific dental examinations. Finally, these specific treatments are presented via a client/server application with the aim of allowing a telediagnosis and treatment.

  1. A NONOVERLAPPING DOMAIN DECOMPOSITION METHOD FOR EXTERIOR 3-D PROBLEM

    De-hao Yu; Ji-ming Wu; Ji-ming Wu

    2001-01-01

    In this paper, a nonoverlapping domain decomposition method, which is based on the natural boundary reduction(cf. [4, 13, 15]), is developed to solve the boundary value problem in exterior three-dimensional domain of general shape. Convergence analyses both for the exterior spherical domain and the general exterior domain are made. Some numerical examples are also provided to illustrate the method.

  2. Time domain topology optimization of 3D nanophotonic devices

    Elesin, Yuriy; Lazarov, Boyan Stefanov; Jensen, Jakob Søndergaard; Sigmund, Ole

    2014-01-01

    We present an efficient parallel topology optimization framework for design of large scale 3D nanophotonic devices. The code shows excellent scalability and is demonstrated for optimization of broadband frequency splitter, waveguide intersection, photonic crystal-based waveguide and nanowire-base......-based waveguide. The obtained results are compared to simplified 2D studies and we demonstrate that 3D topology optimization may lead to significant performance improvements. © 2013 Elsevier B.V. All rights reserved....

  3. Investigation of murine vasodynamics by Fourier domain optical coherence tomography

    Meißner, Sven; Müller, Gregor; Walther, Julia; Krüger, Alexander; Cuevas, Maximiliano; Eichhorn, Birgit; Ravens, Ursula; Morawietz, Henning; Koch, Edmund

    2007-07-01

    In vivo imaging of blood vessels obtain useful insights in characterizing the dynamics of vasoconstriction and vasodilation. Fourier domain optical Coherence Tomography (FD-OCT) imaging technique permits in vivo investigation of blood vessels in their anatomical context without preparation traumata by temporal resolved image stacks. OCT is an optical, contact less imaging technique based on Michelson interferometry of short coherent near infrared light. Particularly by the possibility of a contact-less measurement and the high axial resolution up to 10 microns OCT is superior to an investigation by ultra sound measurement. Furthermore we obtain a high time resolution of vessel dynamic measurements with the used Fourier domain OCT-system by a high A-scan rate [1,22kHz]. In this study the model of saphenous artery was chosen for analyzing function and dynamics. The arteria saphena in the mouse is a suitable blood vessel due to the small inner diameter, a sensitive response to vasoactive stimuli and an advantageous anatomically position. Male wild type mice (C57BL/6) at the age of 8 weeks were fed control or high-fat diet for 10 weeks before analyzing the vasodynamics. The blood vessel was stimulated by dermal application of potassium to induce vasoconstriction or Sodium-Nitroprusside (SNP) to induce vasodilation. The morphology of the a. saphena and vein was determined by 3D image stacks. Time series (72 seconds, 300x512 pixel per frame) of cross-sectional images were analysed using semi automatic image processing software. Time course of dynamic parameters of the vessel was measured.

  4. Time-Domain Analysis for 3-D Moored Systems

    肖越; 王言英

    2004-01-01

    In the paper, a comprehensive numerical study on the moored system is performed in time domain. The moored system, which is composed of the floating body sub-system and the mooring line sub-system, is calculated as a whole system by coupling. A time-domain method is applied to the analysis of the mooring line sub-system, and at the same time, an indirect time-domain method translated from frequency-domain to time-domain is developed to calculate the floating body sub-system. In the end, an FPSO vessel is calculated as a numerical example by the present method. A comparison of the result of the model test and that of the numerical method indicates that the present method is exact and effective.

  5. Digital Backpropagation in the Nonlinear Fourier Domain

    Wahls, Sander; Prilepsky, Jaroslaw E; Poor, H Vincent; Turitsyn, Sergei K

    2015-01-01

    Nonlinear and dispersive transmission impairments in coherent fiber-optic communication systems are often compensated by reverting the nonlinear Schr\\"odinger equation, which describes the evolution of the signal in the link, numerically. This technique is known as digital backpropagation. Typical digital backpropagation algorithms are based on split-step Fourier methods in which the signal has to be discretized in time and space. The need to discretize in both time and space however makes the real-time implementation of digital backpropagation a challenging problem. In this paper, a new fast algorithm for digital backpropagation based on nonlinear Fourier transforms is presented. Aiming at a proof of concept, the main emphasis will be put on fibers with normal dispersion in order to avoid the issue of solitonic components in the signal. However, it is demonstrated that the algorithm also works for anomalous dispersion if the signal power is low enough. Since the spatial evolution of a signal governed by the ...

  6. Exact and approximate Fourier rebinning algorithms for the solution of the data truncation problem in 3-D PET.

    Bouallègue, Fayçal Ben; Crouzet, Jean-François; Comtat, Claude; Fourcade, Marjolaine; Mohammadi, Bijan; Mariano-Goulart, Denis

    2007-07-01

    This paper presents an extended 3-D exact rebinning formula in the Fourier space that leads to an iterative reprojection algorithm (iterative FOREPROJ), which enables the estimation of unmeasured oblique projection data on the basis of the whole set of measured data. In first approximation, this analytical formula also leads to an extended Fourier rebinning equation that is the basis for an approximate reprojection algorithm (extended FORE). These algorithms were evaluated on numerically simulated 3-D positron emission tomography (PET) data for the solution of the truncation problem, i.e., the estimation of the missing portions in the oblique projection data, before the application of algorithms that require complete projection data such as some rebinning methods (FOREX) or 3-D reconstruction algorithms (3DRP or direct Fourier methods). By taking advantage of all the 3-D data statistics, the iterative FOREPROJ reprojection provides a reliable alternative to the classical FOREPROJ method, which only exploits the low-statistics nonoblique data. It significantly improves the quality of the external reconstructed slices without loss of spatial resolution. As for the approximate extended FORE algorithm, it clearly exhibits limitations due to axial interpolations, but will require clinical studies with more realistic measured data in order to decide on its pertinence. PMID:17649913

  7. Quantitative evaluation of temporal partial coherence using 3D Fourier transforms of through-focus TEM images

    We evaluate the temporal partial coherence of transmission electron microscopy (TEM) using the three-dimensional (3D) Fourier transform (FT) of through-focus images. Young's fringe method often indicates the unexpected high-frequency information due to non-linear imaging terms. We have already used the 3D FT of axial (non-tilted) through-focus images to reduce the effect of non-linear terms on the linear imaging term, and demonstrated the improvement of monochromated lower-voltage TEM performance [Kimoto et al., Ultramicroscopy 121 (2012) 31–39]. Here we apply the 3D FT method with intentionally tilted incidence to normalize various factors associated with a TEM specimen and an imaging device. The temporal partial coherence of two microscopes operated at 30, 60 and 80 kV is evaluated. Our method is applicable to such cases where the non-linear terms become more significant in lower acceleration voltage or aberration-corrected high spatial resolution TEM. - Highlights: • We assess the temporal partial coherence of TEM using a 3-dimensional (3D) Fourier transform (FT) of through-focus images. • We apply the 3D FT method with intentionally tilted incidence to normalize various factors associated with a TEM specimen and an imaging device. • The spatial frequency at which information transfer decreases to 1/e2 (13.5%) is determined for two lower-voltage TEM systems

  8. 3D seismic modeling and reverse‐time migration with the parallel Fourier method using non‐blocking collective communications

    Chu, Chunlei

    2009-01-01

    The major performance bottleneck of the parallel Fourier method on distributed memory systems is the network communication cost. In this study, we investigate the potential of using non‐blocking all‐to‐all communications to solve this problem by overlapping computation and communication. We present the runtime comparison of a 3D seismic modeling problem with the Fourier method using non‐blocking and blocking calls, respectively, on a Linux cluster. The data demonstrate that a performance improvement of up to 40% can be achieved by simply changing blocking all‐to‐all communication calls to non‐blocking ones to introduce the overlapping capability. A 3D reverse‐time migration result is also presented as an extension to the modeling work based on non‐blocking collective communications.

  9. Analysis of hybrid dielectric-plasmonic slot waveguide structures with 3D Fourier modal methods

    Čtyroký, Jiří; Kwiecien, P.; Richter, I.

    2013-01-01

    Roč. 8, 23 March (2013), s. 130241-130246. ISSN 1990-2573 R&D Projects: GA ČR(CZ) GAP205/10/0046; GA MŠk OC09061 Institutional support: RVO:67985882 Keywords : Fourier modal method * Hybrid dielectric-plasmonic waveguide * Plasmonic waveguides Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering Impact factor: 1.152, year: 2013

  10. Discrete Fourier analysis with lattices on planar domains

    Li, Huiyuan; Xu, Yuan

    2009-01-01

    A discrete Fourier analysis associated with translation lattices is developed recently by the authors. It permits two lattices, one determining the integral domain and the other determining the family of exponential functions. Possible choices of lattices are discussed in the case of lattices that tile $\\RR^2$ and several new results on cubature and interpolation by trigonometric, as well as algebraic, polynomials are obtained.

  11. Dynamics of Fourier domain mode-locked lasers.

    Slepneva, S; Kelleher, B; O'Shaughnessy, B; Hegarty, S P; Vladimirov, A G; Huyet, G

    2013-08-12

    An analysis of the dynamical features in the output of a Fourier Domain Mode Locked laser is presented. An experimental study of the wavelength sweep-direction asymmetry in the output of such devices is undertaken. A mathematical model based on a set of delay differential equations is developed and shown to agree well with experiment. PMID:23938841

  12. Power filtering of nth order in the fractional Fourier domain

    Alieva, Tatiana; Calvo, Maria Luisa [Departamento de Optica, Facultad de Fisicas, Universidad Complutense de Madrid, Madrid (Spain); Bastiaans, Martin J. [Faculteit Elektrotechniek, Technische Universiteit Eindhoven, Eindhoven (Netherlands)

    2002-09-13

    The main properties of the power filtering operation in the fractional Fourier domain and its relationship to the differentiation operation are considered. The application of linear power filtering for solving the phase retrieval problem from intensity distributions only is proposed. The optical configuration for the experimental realization of the method is discussed. (author)

  13. Power filtering of nth order in the fractional Fourier domain

    The main properties of the power filtering operation in the fractional Fourier domain and its relationship to the differentiation operation are considered. The application of linear power filtering for solving the phase retrieval problem from intensity distributions only is proposed. The optical configuration for the experimental realization of the method is discussed. (author)

  14. Suppression law of quantum states in a 3D photonic fast Fourier transform chip.

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-01-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong-Ou-Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms. PMID:26843135

  15. Adaptive optics assisted Fourier domain OCT with balanced detection

    Meadway, A.; Bradu, A.; Hathaway, M.; Van der Jeught, S.; Rosen, R. B.; Podoleanu, A. Gh.

    2011-03-01

    Two factors are of importance to optical coherence tomography (OCT), resolution and sensitivity. Adaptive optics improves the resolution of a system by correcting for aberrations causing distortions in the wave-front. Balanced detection has been used in time domain OCT systems by removing excess photon noise, however it has not been used in Fourier domain systems, as the cameras used in the spectrometers saturated before excess photon noise becomes a problem. Advances in camera technology mean that this is no longer the case and balanced detection can now be used to improve the signal to noise ratio in a Fourier domain (FD) OCT system. An FD-OCT system, enhanced with adaptive optics, is presented and is used to show the improvement that balanced detection can provide. The signal to noise ratios of single camera detection and balanced detection are assessed and in-vivo retinal images are acquired to demonstrate better image quality when using balance detection.

  16. Mapping of the C3d receptor (CR2)-binding site and a neoantigenic site in the C3d domain of the third component of complement.

    LAMBRIS, J. D.; Ganu, V S; Hirani, S.; Müller-Eberhard, H. J.

    1985-01-01

    The C3d domain of C3 contains the site that binds to the C3d receptor (CR2) which is expressed on B lymphocytes. It also contains a neoantigenic determinant that is recognized by monoclonal antibody (mAb) 130 and is expressed when C3b is cleaved to iC3b and subsequently to C3dg or C3d. mAb 130 inhibits the binding of C3d to CR2. In this study, the locations of the CR2-binding site and of the neoantigen recognized by mAb 130 within the C3d domain were investigated. Treatment of human C3d with ...

  17. Fourier information optics for the ultrafast time domain.

    Weiner, Andrew M

    2008-02-01

    Ultrafast photonic signal processing based on Fourier optics principles offers exciting possibilities to go beyond the processing speeds of electronics technologies for applications in high-speed fiber communications and ultrawideband wireless. I review our recent work on processing of ultrafast optical signals via conversion between time, space, and optical frequency (Fourier) domains. Specific topics include optical arbitrary waveform generation, application of optical pulse shaping technologies for wavelength-parallel compensation of fiber transmission impairments and for experimental studies of optical code-division multiple-access communications, and application of photonic methods for precompensation of dispersion effects in wireless transmission of radio-frequency signals over ultrawideband antenna links. PMID:18239704

  18. Fourier domain asymmetric cryptosystem for privacy protected multimodal biometric security

    Choudhury, Debesh

    2016-04-01

    We propose a Fourier domain asymmetric cryptosystem for multimodal biometric security. One modality of biometrics (such as face) is used as the plaintext, which is encrypted by another modality of biometrics (such as fingerprint). A private key is synthesized from the encrypted biometric signature by complex spatial Fourier processing. The encrypted biometric signature is further encrypted by other biometric modalities, and the corresponding private keys are synthesized. The resulting biometric signature is privacy protected since the encryption keys are provided by the human, and hence those are private keys. Moreover, the decryption keys are synthesized using those private encryption keys. The encrypted signatures are decrypted using the synthesized private keys and inverse complex spatial Fourier processing. Computer simulations demonstrate the feasibility of the technique proposed.

  19. 3DSwap: Curated knowledgebase of proteins involved in 3D domain swapping

    Shameer, Khader

    2011-09-29

    Three-dimensional domain swapping is a unique protein structural phenomenon where two or more protein chains in a protein oligomer share a common structural segment between individual chains. This phenomenon is observed in an array of protein structures in oligomeric conformation. Protein structures in swapped conformations perform diverse functional roles and are also associated with deposition diseases in humans. We have performed in-depth literature curation and structural bioinformatics analyses to develop an integrated knowledgebase of proteins involved in 3D domain swapping. The hallmark of 3D domain swapping is the presence of distinct structural segments such as the hinge and swapped regions. We have curated the literature to delineate the boundaries of these regions. In addition, we have defined several new concepts like \\'secondary major interface\\' to represent the interface properties arising as a result of 3D domain swapping, and a new quantitative measure for the \\'extent of swapping\\' in structures. The catalog of proteins reported in 3DSwap knowledgebase has been generated using an integrated structural bioinformatics workflow of database searches, literature curation, by structure visualization and sequence-structure-function analyses. The current version of the 3DSwap knowledgebase reports 293 protein structures, the analysis of such a compendium of protein structures will further the understanding molecular factors driving 3D domain swapping. The Author(s) 2011.

  20. The DynDom3D Webserver for the Analysis of Domain Movements in Multimeric Proteins.

    Girdlestone, Christopher; Hayward, Steven

    2016-01-01

    DynDom3D is a program for the analysis of domain movements in multimeric proteins. Its inputs are two structure files that indicate a possible domain movement, but the onus has been on the user to process the files so that there is the necessary one-to-one equivalence between atoms in the two atom lists. This is often a prohibitive task to carry out manually, which has limited the application of DynDom3D. Here we report on a webserver with a preprocessor that automatically creates an equivalence between atoms using sequence alignment methods. The processed structure files are passed to DynDom3D and the results are presented on a webpage that includes molecular graphics for easy visualization. PMID:26540459

  1. A 3D domain decomposition approach for the identification of spatially varying elastic material parameters

    Moussawi, Ali

    2015-02-24

    Summary: The post-treatment of (3D) displacement fields for the identification of spatially varying elastic material parameters is a large inverse problem that remains out of reach for massive 3D structures. We explore here the potential of the constitutive compatibility method for tackling such an inverse problem, provided an appropriate domain decomposition technique is introduced. In the method described here, the statically admissible stress field that can be related through the known constitutive symmetry to the kinematic observations is sought through minimization of an objective function, which measures the violation of constitutive compatibility. After this stress reconstruction, the local material parameters are identified with the given kinematic observations using the constitutive equation. Here, we first adapt this method to solve 3D identification problems and then implement it within a domain decomposition framework which allows for reduced computational load when handling larger problems.

  2. Global regular solutions for the 3D Zakharov-Kuznetsov equation posed on unbounded domains

    Larkin, N. A.

    2015-09-01

    An initial-boundary value problem for the 3D Zakharov-Kuznetsov equation posed on unbounded domains is considered. Existence and uniqueness of a global regular solution as well as exponential decay of the H2-norm for small initial data are proven.

  3. Laplace-domain waveform modeling and inversion for the 3D acoustic-elastic coupled media

    Shin, Jungkyun; Shin, Changsoo; Calandra, Henri

    2016-06-01

    Laplace-domain waveform inversion reconstructs long-wavelength subsurface models by using the zero-frequency component of damped seismic signals. Despite the computational advantages of Laplace-domain waveform inversion over conventional frequency-domain waveform inversion, an acoustic assumption and an iterative matrix solver have been used to invert 3D marine datasets to mitigate the intensive computing cost. In this study, we develop a Laplace-domain waveform modeling and inversion algorithm for 3D acoustic-elastic coupled media by using a parallel sparse direct solver library (MUltifrontal Massively Parallel Solver, MUMPS). We precisely simulate a real marine environment by coupling the 3D acoustic and elastic wave equations with the proper boundary condition at the fluid-solid interface. In addition, we can extract the elastic properties of the Earth below the sea bottom from the recorded acoustic pressure datasets. As a matrix solver, the parallel sparse direct solver is used to factorize the non-symmetric impedance matrix in a distributed memory architecture and rapidly solve the wave field for a number of shots by using the lower and upper matrix factors. Using both synthetic datasets and real datasets obtained by a 3D wide azimuth survey, the long-wavelength component of the P-wave and S-wave velocity models is reconstructed and the proposed modeling and inversion algorithm are verified. A cluster of 80 CPU cores is used for this study.

  4. Gravity data inversion to determine 3D topographycal density contrast of Banten area, Indonesia based on fast Fourier transform

    Windhari, Ayuty; Handayani, Gunawan

    2015-04-01

    The 3D inversion gravity anomaly to estimate topographical density using a matlab source code from gridded data provided by Parker Oldenburg algorithm based on fast Fourier transform was computed. We extend and improved the source code of 3DINVERT.M invented by Gomez Ortiz and Agarwal (2005) using the relationship between Fourier transform of the gravity anomaly and the sum of the Fourier transform from the topography density. We gave density contrast between the two media to apply the inversion. FFT routine was implemented to construct amplitude spectrum to the given mean depth. The results were presented as new graphics of inverted topography density, the gravity anomaly due to the inverted topography and the difference between the input gravity data and the computed ones. It terminates when the RMS error is lower than pre-assigned value used as convergence criterion or until maximum of iterations is reached. As an example, we used the matlab program on gravity data of Banten region, Indonesia.

  5. Predicting detection performance with model observers: Fourier domain or spatial domain?

    Chen, Baiyu; Yu, Lifeng; Leng, Shuai; Kofler, James; Favazza, Christopher; Vrieze, Thomas; McCollough, Cynthia

    2016-03-01

    The use of Fourier domain model observer is challenged by iterative reconstruction (IR), because IR algorithms are nonlinear and IR images have noise texture different from that of FBP. A modified Fourier domain model observer, which incorporates nonlinear noise and resolution properties, has been proposed for IR and needs to be validated with human detection performance. On the other hand, the spatial domain model observer is theoretically applicable to IR, but more computationally intensive than the Fourier domain method. The purpose of this study is to compare the modified Fourier domain model observer to the spatial domain model observer with both FBP and IR images, using human detection performance as the gold standard. A phantom with inserts of various low contrast levels and sizes was repeatedly scanned 100 times on a third-generation, dual-source CT scanner at 5 dose levels and reconstructed using FBP and IR algorithms. The human detection performance of the inserts was measured via a 2-alternative-forced-choice (2AFC) test. In addition, two model observer performances were calculated, including a Fourier domain non-prewhitening model observer and a spatial domain channelized Hotelling observer. The performance of these two mode observers was compared in terms of how well they correlated with human observer performance. Our results demonstrated that the spatial domain model observer correlated well with human observers across various dose levels, object contrast levels, and object sizes. The Fourier domain observer correlated well with human observers using FBP images, but overestimated the detection performance using IR images.

  6. A Generalized Spatial Correlation Model for 3D MIMO Channels based on the Fourier Coefficients of Power Spectrums

    Nadeem, Qurrat-Ul-Ain

    2015-05-07

    Previous studies have confirmed the adverse impact of fading correlation on the mutual information (MI) of two-dimensional (2D) multiple-input multiple-output (MIMO) systems. More recently, the trend is to enhance the system performance by exploiting the channel’s degrees of freedom in the elevation, which necessitates the derivation and characterization of three-dimensional (3D) channels in the presence of spatial correlation. In this paper, an exact closed-form expression for the Spatial Correlation Function (SCF) is derived for 3D MIMO channels. This novel SCF is developed for a uniform linear array of antennas with nonisotropic antenna patterns. The proposed method resorts to the spherical harmonic expansion (SHE) of plane waves and the trigonometric expansion of Legendre and associated Legendre polynomials. The resulting expression depends on the underlying arbitrary angular distributions and antenna patterns through the Fourier Series (FS) coefficients of power azimuth and elevation spectrums. The novelty of the proposed method lies in the SCF being valid for any 3D propagation environment. The developed SCF determines the covariance matrices at the transmitter and the receiver that form the Kronecker channel model. In order to quantify the effects of correlation on the system performance, the information-theoretic deterministic equivalents of the MI for the Kronecker model are utilized in both mono-user and multi-user cases. Numerical results validate the proposed analytical expressions and elucidate the dependence of the system performance on azimuth and elevation angular spreads and antenna patterns. Some useful insights into the behaviour of MI as a function of downtilt angles are provided. The derived model will help evaluate the performance of correlated 3D MIMO channels in the future.

  7. Azimuth–opening angle domain imaging in 3D Gaussian beam depth migration

    Common-image gathers indexed by opening angle and azimuth at imaging points in 3D situations are the key inputs for amplitude-variation-with-angle and velocity analysis by tomography. The Gaussian beam depth migration, propagating each ray by a Gaussian beam form and summing the contributions from all the individual beams to produce the wavefield, can overcome the multipath problem, image steep reflectors and, even more important, provide a convenient and efficient strategy to extract azimuth–opening angle domain common-image gathers (ADCIGs) in 3D seismic imaging. We present a method for computing azimuth and opening angle at imaging points to output 3D ADCIGs by computing the source and receiver wavefield direction vectors which are restricted in the effective region of the corresponding Gaussian beams. In this paper, the basic principle of Gaussian beam migration (GBM) is briefly introduced; the technology and strategy to yield ADCIGs by GBM are analyzed. Numerical tests and field data application demonstrate that the azimuth–opening angle domain imaging method in 3D Gaussian beam depth migration is effective. (paper)

  8. 3D time-domain airborne EM modeling for an arbitrarily anisotropic earth

    Yin, Changchun; Qi, Yanfu; Liu, Yunhe

    2016-08-01

    Time-domain airborne EM data is currently interpreted based on an isotropic model. Sometimes, it can be problematic when working in the region with distinct dipping stratifications. In this paper, we simulate the 3D time-domain airborne EM responses over an arbitrarily anisotropic earth with topography by edge-based finite-element method. Tetrahedral meshes are used to describe the abnormal bodies with complicated shapes. We further adopt the Backward Euler scheme to discretize the time-domain diffusion equation for electric field, obtaining an unconditionally stable linear equations system. We verify the accuracy of our 3D algorithm by comparing with 1D solutions for an anisotropic half-space. Then, we switch attentions to effects of anisotropic media on the strengths and the diffusion patterns of time-domain airborne EM responses. For numerical experiments, we adopt three typical anisotropic models: 1) an anisotropic anomalous body embedded in an isotropic half-space; 2) an isotropic anomalous body embedded in an anisotropic half-space; 3) an anisotropic half-space with topography. The modeling results show that the electric anisotropy of the subsurface media has big effects on both the strengths and the distribution patterns of time-domain airborne EM responses; this effect needs to be taken into account when interpreting ATEM data in areas with distinct anisotropy.

  9. Fourier Phase Domain Steganography: Phase Bin Encoding Via Interpolation

    Rivas, Edward

    2007-04-01

    In recent years there has been an increased interest in audio steganography and watermarking. This is due primarily to two reasons. First, an acute need to improve our national security capabilities in light of terrorist and criminal activity has driven new ideas and experimentation. Secondly, the explosive proliferation of digital media has forced the music industry to rethink how they will protect their intellectual property. Various techniques have been implemented but the phase domain remains a fertile ground for improvement due to the relative robustness to many types of distortion and immunity to the Human Auditory System. A new method for embedding data in the phase domain of the Discrete Fourier Transform of an audio signal is proposed. Focus is given to robustness and low perceptibility, while maintaining a relatively high capacity rate of up to 172 bits/s.

  10. One-dimensional rainbow technique using Fourier domain filtering.

    Wu, Yingchun; Promvongsa, Jantarat; Wu, Xuecheng; Cen, Kefa; Grehan, Gerard; Saengkaew, Sawitree

    2015-11-16

    Rainbow refractometry can measure the refractive index and the size of a droplet simultaneously. The refractive index measurement is extracted from the absolute rainbow scattering angle. Accordingly, the angular calibration is vital for accurate measurements. A new optical design of the one-dimensional rainbow technique is proposed by using a one-dimensional spatial filter in the Fourier domain. The relationship between the scattering angle and the CCD pixel of a recorded rainbow image can be accurately determined by a simple calibration. Moreover, only the light perpendicularly incident on the lens in the angle (φ) direction is selected, which exactly matches the classical inversion algorithm used in rainbow refractometry. Both standard and global one-dimensional rainbow techniques are implemented with the proposed optical design, and are successfully applied to measure the refractive index and the size of a line of n-heptane droplets. PMID:26698532

  11. 3D Laplace-domain full waveform inversion using a single GPU card

    Shin, Jungkyun; Ha, Wansoo; Jun, Hyunggu; Min, Dong-Joo; Shin, Changsoo

    2014-06-01

    The Laplace-domain full waveform inversion is an efficient long-wavelength velocity estimation method for seismic datasets lacking low-frequency components. However, to invert a 3D velocity model, a large cluster of CPU cores have commonly been required to overcome the extremely long computing time caused by a large impedance matrix and a number of source positions. In this study, a workstation with a single GPU card (NVIDIA GTX 580) is successfully used for the 3D Laplace-domain full waveform inversion rather than a large cluster of CPU cores. To exploit a GPU for our inversion algorithm, the routine for the iterative matrix solver is ported to the CUDA programming language for forward and backward modeling parts with minimized modification of the remaining parts, which were originally written in Fortran 90. Using a uniformly structured grid set, nonzero values in the sparse impedance matrix can be arranged according to certain rules, which efficiently parallelize the preconditioned conjugate gradient method for a number of threads contained in the GPU card. We perform a numerical experiment to verify the accuracy of a floating point operation performed by a GPU to calculate the Laplace-domain wavefield. We also measure the efficiencies of the original CPU and modified GPU programs using a cluster of CPU cores and a workstation with a GPU card, respectively. Through the analysis, the parallelized inversion code for a GPU achieves the speedup of 14.7-24.6x compared to a CPU-based serial code depending on the degrees of freedom of the impedance matrix. Finally, the practicality of the proposed algorithm is examined by inverting a 3D long-wavelength velocity model using wide azimuth real datasets in 3.7 days.

  12. Numerical modeling of time domain 3-D problems in accelerator physics

    Time domain analysis is relevant in particle accelerators to study the electromagnetic field interaction of a moving source particle on a lagging test particle as the particles pass an accelerating cavity or some other structure. These fields are called wake fields. The travelling beam inside a beam pipe may undergo more complicated interactions with its environment due to the presence of other irregularities like wires, thin slots, joints and other types of obstacles. Analytical solutions of such problems is impossible and one has to resort to a numerical method. In this paper we present results of our first attempt to model these problems in 3-D using our finite difference time domain (FDTD) code. 10 refs., 9 figs

  13. Second-Order Wave Diffraction Around 3-D Bodies by A Time-Domain Method

    柏威; 滕斌

    2001-01-01

    A time-domain method is applied to simulate nonlinear wave diffraction around a surface piercing 3-D arbitrary body. The method involves the application of Taylor series expansions and the use of perturbation procedure to establish the corresponding boundary value problems with respect to a time-independent fluid domain. A boundary element method based on B-spline expansion is used to calculate the wave field at each time step, and the free surface boundary condition is satisfied to the second order of wave steepness by a numerical integration in time. An artificial damping layer is adopted on the free surface for the removal of wave reflection from the outer boundary. As an illustration, the method is used to compute the second-order wave forces and run-up on a surface-piercing circular cylinder. The present method is found to be accurate, computationally efficient, and numerically stable.

  14. Using 3D Simulation of Elastic Wave Propagation in Laplace Domain for Electromagnetic-Seismic Inverse Modeling

    Petrov, P.; Newman, G. A.

    2010-12-01

    domain we had developed 3D code for full-wave field simulation in the elastic media which take into account nonlinearity introduced by free-surface effects. Our approach is based on the velocity-stress formulation. In the contrast to conventional formulation we defined the material properties such as density and Lame constants not at nodal points but within cells. This second order finite differences method formulated in the cell-based grid, generate numerical solutions compatible with analytical ones within the range errors determinate by dispersion analysis. Our simulator will be embedded in an inversion scheme for joint seismic- electromagnetic imaging. It also offers possibilities for preconditioning the seismic wave propagation problems in the frequency domain. References. Shin, C. & Cha, Y. (2009), Waveform inversion in the Laplace-Fourier domain, Geophys. J. Int. 177(3), 1067- 1079. Shin, C. & Cha, Y. H. (2008), Waveform inversion in the Laplace domain, Geophys. J. Int. 173(3), 922-931. Commer, M. & Newman, G. (2008), New advances in three-dimensional controlled-source electromagnetic inversion, Geophys. J. Int. 172(2), 513-535. Newman, G. A., Commer, M. & Carazzone, J. J. (2010), Imaging CSEM data in the presence of electrical anisotropy, Geophysics, in press.

  15. Determination of glucose concentration using Fourier domain optical coherence tomogram

    El-Sharkawy, Yasser H.

    2009-02-01

    In order to enhance cell culture growth in biosensors such as those for glucose detection must be developed that are capable of monitoring cell culture processes continuously and accurate. Fourier domain optical coherence tomography (FD-OCT) is used to obtain cell images with nanometer level resolution by analyzing the interference pattern by the mixing of reference and objective light to determine glucose concentration in doped double distilled water and create a glucose signature spectrum in salt-sugar solution. We demonstrate ultrahigh-resolution optical coherence tomography (OCT) imaging of in vitro biological cells and an improved deflection angle measurements formal and back projection method is used to reconstruct the two-dimensional glucose concentration performs refractive index distribution. Slopes of OCT signals decreased substantially and almost linearly with the increase of glucose concentration from 2.5 to 15 mg/dl. Phantom studies demonstrated 1% accuracy of scattering- coefficient measurement. Our theoretical and experimental studies suggest that glucose concentration can potentially be measured non-invasively with high sensitivity and accuracy with OCT systems.

  16. 3D whole core fine mesh multigroup diffusion calculations by domain decomposition through alternate dissections

    The fine mesh diffusion formulation is extended to deal with multigroup 3-D problems in rectangular geometries. The formulation includes interface discontinuity factors per cell type, pre-calculated from transport solutions. The iterative scheme, aiming to an efficient parallel implementation in memory distributed multi-processors, is based on domain decomposition in the 4 possible sets of 4 neighbor quarters of assemblies. The alternate dissections achieve convergence to the exact boundary conditions, while attenuating high frequency noise. Whole core convergence is accelerated in the long wavelength effects by a consistent high-order analytical nodal solution performed by the ANDES solver. A neutronics - thermal-hydraulics iterative scheme is also developed to compute best estimate results, by coupling at the detailed cell-subchannel scale the COBAYA3 code with several TH subchannel codes. The numerical performance and convergence rates are verified by computing pin-cell scale solutions for the OECD/NEA/USNRC PWR MOX/UO2 Core Transient Benchmark in 8 energy groups and heterogeneous assemblies. The cell-subchannel scale neutronics and thermal-hydraulics coupling, allows the verification of the effects of the detailed TH feedbacks on cross-sections and, thus, on fuel pin powers, calculated here for a 3D color-set of two different fuel types of the previous benchmark, using COBAYA3 and COBRA-3C. (authors)

  17. Robust and Blind 3D Mesh Watermarking in Spatial Domain Based on Faces Categorization and Sorting

    Molaei, Amir Masoud; Ebrahimnezhad, Hossein; Sedaaghi, Mohammad Hossein

    2016-06-01

    In this paper, a 3D watermarking algorithm in spatial domain is presented with blind detection. In the proposed method, a negligible visual distortion is observed in host model. Initially, a preprocessing is applied on the 3D model to make it robust against geometric transformation attacks. Then, a number of triangle faces are determined as mark triangles using a novel systematic approach in which faces are categorized and sorted robustly. In order to enhance the capability of information retrieval by attacks, block watermarks are encoded using Reed-Solomon block error-correcting code before embedding into the mark triangles. Next, the encoded watermarks are embedded in spherical coordinates. The proposed method is robust against additive noise, mesh smoothing and quantization attacks. Also, it is stout next to geometric transformation, vertices and faces reordering attacks. Moreover, the proposed algorithm is designed so that it is robust against the cropping attack. Simulation results confirm that the watermarked models confront very low distortion if the control parameters are selected properly. Comparison with other methods demonstrates that the proposed method has good performance against the mesh smoothing attacks.

  18. Radiative transfer with scattering for domain-decomposed 3D MHD simulations of cool stellar atmospheres

    Hayek, W; Carlsson, M; Trampedach, R; Collet, R; Gudiksen, B V; Hansteen, V H; Leenaarts, J

    2010-01-01

    We present the implementation of a radiative transfer solver with coherent scattering in the new BIFROST code for radiative magneto-hydrodynamical (MHD) simulations of stellar surface convection. The code is fully parallelized using MPI domain decomposition, which allows for large grid sizes and improved resolution of hydrodynamical structures. We apply the code to simulate the surface granulation in a solar-type star, ignoring magnetic fields, and investigate the importance of coherent scattering for the atmospheric structure. A scattering term is added to the radiative transfer equation, requiring an iterative computation of the radiation field. We use a short-characteristics-based Gauss-Seidel acceleration scheme to compute radiative flux divergences for the energy equation. The effects of coherent scattering are tested by comparing the temperature stratification of three 3D time-dependent hydrodynamical atmosphere models of a solar-type star: without scattering, with continuum scattering only, and with bo...

  19. Domain decomposition PN solutions to the 3D transport benchmark over a range in parameter space

    The objectives of this contribution are twofold. First, the Domain Decomposition (DD) method used in the PARAFISH parallel transport solver is re-interpreted as a Generalized Schwarz Splitting as defined by Tang [SIAM J Sci Stat Comput, vol.13 (2), pp. 573-595, 1992]. Second, PARAFISH provides spherical harmonic (i.e., PN) solutions to the NEA benchmark suite for 3D transport methods and codes over a range in parameter space. To the best of the author's knowledge, these are the first spherical harmonic solutions provided for this demanding benchmark suite. They have been obtained using 512 CPU cores of the JuRoPa machine installed at the Juelich Computing Center (Germany). (author)

  20. Seamless Heterogeneous 3D Tessellation via DWT Domain Smoothing and Mosaicking

    Gilles Gesquière

    2010-01-01

    Full Text Available With todays geobrowsers, the tessellations are far from being smooth due to a variety of reasons: the principal being the light difference and resolution heterogeneity. Whilst the former has been extensively dealt with in the literature through classic mosaicking techniques, the latter has got little attention. We focus on this latter aspect and present two DWT domain methods to seamlessly stitch tiles of heterogeneous resolutions. The first method is local in that each of the tiles that constitute the view, is subjected to one of the three context-based smoothing functions proposed for horizontal, vertical, and radial smoothing, depending on its localization in the tessellation. These functions are applied at the DWT subband level and followed by an inverse DWT to give a smoothened tile. In the second method, though we assume the same tessellation scenario, the view field is thought to be of a sliding window which may contain parts of the tiles from the heterogeneous tessellation. The window is refined in the DWT domain through mosaicking and smoothing followed by a global inverse DWT. Rather than the traditional sense, the mosaicking employed over here targets the heterogeneous resolution. Perceptually, this second method has shown better results than the first one. The methods have been successfully applied to practical examples of both the texture and its corresponding DEM for seamless 3D terrain visualization.

  1. Filterbank implementation for multi-channel sampling in fractional Fourier domain

    2009-01-01

    Reconstruction of a continuous time signal from its periodic nonuniform samples and multi-channel samples is fundamental for multi-channel parallel A/D and MIMO systems. In this paper,with a filterbank interpretation of sampling schemes,the efficient interpolation and reconstruction methods for periodic nonuniform sampling and multi-channel sampling in the fractional Fourier domain are presented. Firstly,the interpolation and sampling identities in the fractional Fourier domain are derived by the properties of the fractional Fourier transform. Then,the particularly efficient filterbank implementations for the periodic nonuniform sampling and the multi-channel sampling in the fractional Fourier domain are introduced. At last,the relationship between the multi-channel sampling and the filterbank in the fractional Fourier domain is investigated,which shows that any perfect reconstruction filterbank can lead to new sampling and reconstruction strategies.

  2. Parametric Spectral Correlations of Disordered Systems in the Fourier Domain

    Guarneri, I.; Zyczkowski, K.; Zakrzewski, J.; Molinari, L.; Casati, G.

    1995-01-01

    A Fourier analysis of parametric level dynamics for random matrices periodically depending on a phase is developed. We demonstrate both theoretically and numerically that under very general conditions the correlation $C(\\varphi )$ of level velocities is singular at $\\varphi =0$ for any symmetry class; the singularity is revealed by algebraic tails in Fourier transforms, and is milder, the stronger the level repulsion in the chosen ensemble. The singularity is strictly connected with the diver...

  3. Keratometric index obtained by Fourier-domain optical coherence tomography.

    Yanjun Hua

    Full Text Available To determine the keratometric indices calculated based on parameters obtained by Fourier-domain optical coherence tomography (FD-OCT.The ratio of anterior corneal curvature to posterior corneal curvature (Ratio and keratometric index (N were calculated within central 3 mm zone with the RTVue FD-OCT (RTVue, Optovue, Inc. in 186 untreated eyes, 60 post-LASIK/PRK eyes, and 39 keratoconus eyes. The total corneal powers were calculated using different keratometric indices: Kcal based on the mean calculated keratometric index, K1.3315 calculated by the keratometric index of 1.3315, and K1.3375 calculated by the keratometric index of 1.3375. In addition, the total corneal powers based on Gaussian optics formula (Kactual were calculated.The means for Ratio in untreated controls, post-LASIK/PRK group and keratoconus group were 1.176 ± 0.022 (95% confidence interval (CI, 1.172-1.179, 1.314 ± 0.042 (95%CI, 1.303-1.325 and 1.229 ± 0.118 (95%CI, 1.191-1.267, respectively. And the mean calculated keratometric index in untreated controls, post-LASIK/PRK group and keratoconus group were 1.3299 ± 0.00085 (95%CI, 1.3272-1.3308, 1.3242 ± 0.00171 (95%CI, 1.3238-1.3246 and 1.3277 ± 0.0046 (95%CI, 1.3263-1.3292, respectively. All the parameters were normally distributed. The differences between Kcal and Kactual, K1.3315 and Kactual, and K1.3375 and Kactual were 0.00 ± 0.11 D, 0.21 ± 0.11 D and 0.99 ± 0.12 D, respectively, in untreated controls; -0.01 ± 0.20 D, 0.85 ± 0.18 D and 1.56 ± 0.16 D, respectively, in post-LASIK/PRK group; and 0.03 ± 0.67 D, 0.56 ± 0.70 D and 1.40 ± 0.76 D, respectively, in keratoconus group.The calculated keratometric index is negatively related to the ratio of anterior corneal curvature to posterior corneal curvature in untreated, post-LASIK/PRK, and keratoconus eyes, respectively. Using the calculated keratometric index may improve the prediction accuracies of total corneal powers in untreated controls, but not in post

  4. Comparison of 2D and 3D Fourier modal methods for modeling subwavelength-structured silicon waveguides

    Kwieciena, P.; Richter, I.; Čtyroký, Jiří

    Bellingham : SPIE, 2011, 83060Y. ISBN 978-0-8194-8953-1. [ Photonics , Devices, and Systems V. Praha (CZ), 24.08.2011-26.08.2011] Institutional research plan: CEZ:AV0Z20670512 Keywords : Fourier modal method * Bi-directional mode expansion propagation method * Bloch mode Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering

  5. An iterative KP1 method for solving the transport equation in 3D domains on unstructured grids

    Kokonkov, N. I.; Nikolaeva, O. V.

    2015-10-01

    A two-step iterative KP1 method for solving systems of grid equations that approximate the integro-differential transport equation in 3D domains on unstructured grids using nodal SN methods is described. Results of testing the efficiency of the proposed method in solving benchmark problems of reactor protection on tetrahedral grids are presented.

  6. Accurate characterization of 3D diffraction gratings using time domain discontinuous Galerkin method with exact absorbing boundary conditions

    Sirenko, Kostyantyn

    2013-07-01

    Exact absorbing and periodic boundary conditions allow to truncate grating problems\\' infinite physical domains without introducing any errors. This work presents exact absorbing boundary conditions for 3D diffraction gratings and describes their discretization within a high-order time-domain discontinuous Galerkin finite element method (TD-DG-FEM). The error introduced by the boundary condition discretization matches that of the TD-DG-FEM; this results in an optimal solver in terms of accuracy and computation time. Numerical results demonstrate the superiority of this solver over TD-DG-FEM with perfectly matched layers (PML)-based domain truncation. © 2013 IEEE.

  7. Real-time Graphics Processing Unit Based Fourier Domain Optical Coherence Tomography and Surgical Applications

    Zhang, Kang

    2011-12-01

    In this dissertation, real-time Fourier domain optical coherence tomography (FD-OCT) capable of multi-dimensional micrometer-resolution imaging targeted specifically for microsurgical intervention applications was developed and studied. As a part of this work several ultra-high speed real-time FD-OCT imaging and sensing systems were proposed and developed. A real-time 4D (3D+time) OCT system platform using the graphics processing unit (GPU) to accelerate OCT signal processing, the imaging reconstruction, visualization, and volume rendering was developed. Several GPU based algorithms such as non-uniform fast Fourier transform (NUFFT), numerical dispersion compensation, and multi-GPU implementation were developed to improve the impulse response, SNR roll-off and stability of the system. Full-range complex-conjugate-free FD-OCT was also implemented on the GPU architecture to achieve doubled image range and improved SNR. These technologies overcome the imaging reconstruction and visualization bottlenecks widely exist in current ultra-high speed FD-OCT systems and open the way to interventional OCT imaging for applications in guided microsurgery. A hand-held common-path optical coherence tomography (CP-OCT) distance-sensor based microsurgical tool was developed and validated. Through real-time signal processing, edge detection and feed-back control, the tool was shown to be capable of track target surface and compensate motion. The micro-incision test using a phantom was performed using a CP-OCT-sensor integrated hand-held tool, which showed an incision error less than +/-5 microns, comparing to >100 microns error by free-hand incision. The CP-OCT distance sensor has also been utilized to enhance the accuracy and safety of optical nerve stimulation. Finally, several experiments were conducted to validate the system for surgical applications. One of them involved 4D OCT guided micro-manipulation using a phantom. Multiple volume renderings of one 3D data set were

  8. Reconstruction for Time-Domain In Vivo EPR 3D Multigradient Oximetric Imaging—A Parallel Processing Perspective

    Christopher D. Dharmaraj

    2009-01-01

    Full Text Available Three-dimensional Oximetric Electron Paramagnetic Resonance Imaging using the Single Point Imaging modality generates unpaired spin density and oxygen images that can readily distinguish between normal and tumor tissues in small animals. It is also possible with fast imaging to track the changes in tissue oxygenation in response to the oxygen content in the breathing air. However, this involves dealing with gigabytes of data for each 3D oximetric imaging experiment involving digital band pass filtering and background noise subtraction, followed by 3D Fourier reconstruction. This process is rather slow in a conventional uniprocessor system. This paper presents a parallelization framework using OpenMP runtime support and parallel MATLAB to execute such computationally intensive programs. The Intel compiler is used to develop a parallel C++ code based on OpenMP. The code is executed on four Dual-Core AMD Opteron shared memory processors, to reduce the computational burden of the filtration task significantly. The results show that the parallel code for filtration has achieved a speed up factor of 46.66 as against the equivalent serial MATLAB code. In addition, a parallel MATLAB code has been developed to perform 3D Fourier reconstruction. Speedup factors of 4.57 and 4.25 have been achieved during the reconstruction process and oximetry computation, for a data set with 23×23×23 gradient steps. The execution time has been computed for both the serial and parallel implementations using different dimensions of the data and presented for comparison. The reported system has been designed to be easily accessible even from low-cost personal computers through local internet (NIHnet. The experimental results demonstrate that the parallel computing provides a source of high computational power to obtain biophysical parameters from 3D EPR oximetric imaging, almost in real-time.

  9. Reconstruction for time-domain in vivo EPR 3D multigradient oximetric imaging--a parallel processing perspective.

    Dharmaraj, Christopher D; Thadikonda, Kishan; Fletcher, Anthony R; Doan, Phuc N; Devasahayam, Nallathamby; Matsumoto, Shingo; Johnson, Calvin A; Cook, John A; Mitchell, James B; Subramanian, Sankaran; Krishna, Murali C

    2009-01-01

    Three-dimensional Oximetric Electron Paramagnetic Resonance Imaging using the Single Point Imaging modality generates unpaired spin density and oxygen images that can readily distinguish between normal and tumor tissues in small animals. It is also possible with fast imaging to track the changes in tissue oxygenation in response to the oxygen content in the breathing air. However, this involves dealing with gigabytes of data for each 3D oximetric imaging experiment involving digital band pass filtering and background noise subtraction, followed by 3D Fourier reconstruction. This process is rather slow in a conventional uniprocessor system. This paper presents a parallelization framework using OpenMP runtime support and parallel MATLAB to execute such computationally intensive programs. The Intel compiler is used to develop a parallel C++ code based on OpenMP. The code is executed on four Dual-Core AMD Opteron shared memory processors, to reduce the computational burden of the filtration task significantly. The results show that the parallel code for filtration has achieved a speed up factor of 46.66 as against the equivalent serial MATLAB code. In addition, a parallel MATLAB code has been developed to perform 3D Fourier reconstruction. Speedup factors of 4.57 and 4.25 have been achieved during the reconstruction process and oximetry computation, for a data set with 23 x 23 x 23 gradient steps. The execution time has been computed for both the serial and parallel implementations using different dimensions of the data and presented for comparison. The reported system has been designed to be easily accessible even from low-cost personal computers through local internet (NIHnet). The experimental results demonstrate that the parallel computing provides a source of high computational power to obtain biophysical parameters from 3D EPR oximetric imaging, almost in real-time. PMID:19672315

  10. Wakefield Simulation of CLIC PETS Structure Using Parallel 3D Finite Element Time-Domain Solver T3P

    Candel, A.; Kabel, A.; Lee, L.; Li, Z.; Ng, C.; Schussman, G.; Ko, K.; /SLAC; Syratchev, I.; /CERN

    2009-06-19

    In recent years, SLAC's Advanced Computations Department (ACD) has developed the parallel 3D Finite Element electromagnetic time-domain code T3P. Higher-order Finite Element methods on conformal unstructured meshes and massively parallel processing allow unprecedented simulation accuracy for wakefield computations and simulations of transient effects in realistic accelerator structures. Applications include simulation of wakefield damping in the Compact Linear Collider (CLIC) power extraction and transfer structure (PETS).

  11. Fractional Fourier transform for partially coherent beam in spatial-frequency domain

    Cai Yang-Jian; Lin Qiang

    2004-01-01

    By using Fourier transform and the tensor analysis method, the fractional Fourier transform (FRT) in the spatialfrequency domain for partially coherent beams is derived. Based on the FRT in the spatial-frequency domain, an analytical transform formula is derived for a partially coherent twisted anisotropic Gaussian-Schell model (GSM) beam passing through the FRT system. The connections between the FRT formula and the generalized diffraction integral formulae for partially coherent beams through an aligned optical system and a misaligned optical system in the spatialfrequency domain are discussed, separately. By using the derived formula, the intensity distribution of partially coherent twisted anisotropic GSM beams in the FRT plane are studied in detail. The formula derived provide a convenient tool for analysing and calculating the FRTs of the partially coherent beams in spatial-frequency domain.

  12. Multi-domain, higher order level set scheme for 3D image segmentation on the GPU

    Sharma, Ojaswa; Zhang, Qin; Anton, François;

    2010-01-01

    evaluate level set surfaces that are $C^2$ continuous, but are slow due to high computational burden. In this paper, we provide a higher order GPU based solver for fast and efficient segmentation of large volumetric images. We also extend the higher order method to multi-domain segmentation. Our streaming...

  13. 3-D branching of magnetic domains on compressed si-fe steel with goss texture

    Perevertov, Oleksiy; Schaefer, R.; Stupakov, Oleksandr

    2014-01-01

    Roč. 50, č. 11 (2014), s. 2007804. ISSN 0018-9464 R&D Projects: GA ČR GB14-36566G; GA ČR GA13-18993S Institutional support: RVO:68378271 Keywords : grain-oriented silicon steel * Kerr microscopy * magnetic domains * stress Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 1.386, year: 2014

  14. Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization

    Vuthy Ea

    2015-07-01

    Full Text Available Recent investigations on 3D chromatin folding revealed that the eukaryote genomes are both highly compartmentalized and extremely dynamic. This review presents the most recent advances in topological domains’ organization of the eukaryote genomes and discusses the relationship to chromatin loop formation. CTCF protein appears as a central factor of these two organization levels having either a strong insulating role at TAD borders, or a weaker architectural role in chromatin loop formation. TAD borders directly impact on chromatin dynamics by restricting contacts within specific genomic portions thus confining chromatin loop formation within TADs. We discuss how sub-TAD chromatin dynamics, constrained into a recently described statistical helix conformation, can produce functional interactions by contact stabilization.

  15. Open-geometry Fourier modal method: modeling nanophotonic structures in infinite domains

    Häyrynen, Teppo; de Lasson, Jakob Rosenkrantz; Gregersen, Niels

    2016-01-01

    We present an open-geometry Fourier modal method based on a new combination of open boundary conditions and an efficient k-space discretization. The open boundary of the computational domain is obtained using basis functions that expand the whole space, and the integrals subsequently appearing due...... freedom, which may pave the way for more accurate and efficient modeling of open nanophotonic structures....

  16. Uniform regularity and vanishing dissipation limit for the full compressible Navier-Stokes system in 3-D bounded domain

    Yong, Wang

    2015-01-01

    In the present paper, we study the uniform regularity and vanishing dissipation limit for the full compressible Navier-Stokes system whose viscosity and heat conductivity are allowed to vanish at different order. The problem is studied in a 3-D bounded domain with Navier-slip type boundary conditions \\eqref{1.9}. It is shown that there exists a unique strong solution to the full compressible Navier-Stokes system with the boundary conditions \\eqref{1.9} in a finite time interval which is indep...

  17. Massive parallelization of a 3D finite difference electromagnetic forward solution using domain decomposition methods on multiple CUDA enabled GPUs

    Schultz, A.

    2010-12-01

    3D forward solvers lie at the core of inverse formulations used to image the variation of electrical conductivity within the Earth's interior. This property is associated with variations in temperature, composition, phase, presence of volatiles, and in specific settings, the presence of groundwater, geothermal resources, oil/gas or minerals. The high cost of 3D solutions has been a stumbling block to wider adoption of 3D methods. Parallel algorithms for modeling frequency domain 3D EM problems have not achieved wide scale adoption, with emphasis on fairly coarse grained parallelism using MPI and similar approaches. The communications bandwidth as well as the latency required to send and receive network communication packets is a limiting factor in implementing fine grained parallel strategies, inhibiting wide adoption of these algorithms. Leading Graphics Processor Unit (GPU) companies now produce GPUs with hundreds of GPU processor cores per die. The footprint, in silicon, of the GPU's restricted instruction set is much smaller than the general purpose instruction set required of a CPU. Consequently, the density of processor cores on a GPU can be much greater than on a CPU. GPUs also have local memory, registers and high speed communication with host CPUs, usually through PCIe type interconnects. The extremely low cost and high computational power of GPUs provides the EM geophysics community with an opportunity to achieve fine grained (i.e. massive) parallelization of codes on low cost hardware. The current generation of GPUs (e.g. NVidia Fermi) provides 3 billion transistors per chip die, with nearly 500 processor cores and up to 6 GB of fast (DDR5) GPU memory. This latest generation of GPU supports fast hardware double precision (64 bit) floating point operations of the type required for frequency domain EM forward solutions. Each Fermi GPU board can sustain nearly 1 TFLOP in double precision, and multiple boards can be installed in the host computer system. We

  18. Efficient 3D Acoustic Numerical modeling in the Logarithmic-grid using the Expanding Domain Method

    Hong, B. R.; Chung, W.; Ko, H.; Bae, H. S.

    2015-12-01

    In the numerical modeling of seismic wave propagation by the use of a discrete computing domain, dispersion analysis is preceded by the determination of the spatial grid spacings in order to ensure accurate modeling results. Grid spacing is a function of wavelength, and the wavelength depends on the minimum velocity and maximum source frequency. Therefore, as the frequency increases, the number of grids increase and this leads to computational overburden. In order to reduce the computing complexity, coordinate transformation techniques such as Riemannian coordinates and logarithmic grid sets are proposed. Riemannian wave-field extrapolation is a way to reformulate the wave-field by expressing it in Riemannian coordinates. In the logarithmic grid, grid spacing changes logarithmically, so this enables us to reduce the number of grids compared to a conventional grid set. Furthermore, this could completely remove boundary reflections by extending the model dimensions. However, numerical modeling in the logarithmic grid is still inefficient because it is performed for whole model at every individual time step. In this study we applied the expanding domain method to the logarithmic modeling in order to improve computational efficiency. This method, based on amplitude comparison, excludes computations for zero wave-fields by considering a non-zero domain boundary. Numerical examples demonstrated that our new modeling method enhances computational efficiency maintaining accuracy compared with conventional modeling methods. In wider and higher-order dimensions, particularly, the efficiency of our modeling method increased. Our new modeling technique could also be applied to the generation of underwater target echo signals requiring high frequency analysis.

  19. Multi-domain, higher order level set scheme for 3D image segmentation on the GPU

    Sharma, Ojaswa; Zhang, Qin; Anton, François; Bajaj, Chandrajit

    evaluate level set surfaces that are $C^2$ continuous, but are slow due to high computational burden. In this paper, we provide a higher order GPU based solver for fast and efficient segmentation of large volumetric images. We also extend the higher order method to multi-domain segmentation. Our streaming......Level set method based segmentation provides an efficient tool for topological and geometrical shape handling. Conventional level set surfaces are only $C^0$ continuous since the level set evolution involves linear interpolation to compute derivatives. Bajaj et al. present a higher order method to...

  20. The Fourier-finite-element approximation of the lame equations in axisymmetric domains with edges

    This paper is concerned with a priori error estimates and convergence analysis of the Fourier-finite-element solutions of the Neumann problem for the Lame equations in axisymmetric domains Ω-circumflex is contained in R3 with reentrant edges. The Fourier-FEM combines the approximating Fourier method with respect to the rotational angle using trigonometric polynomials of degree N (N →∞), with the finite-element method on the plane meridian domain of Ω-circumflex with mesh size h (h → 0) for approximating the Fourier coefficients. The asymptotic behavior of the solution near reentrant edges is described by singular functions in non-tensor product form and treated numerically by means of finite element method on locally graded meshes. For the right-hand side f-circumflex is an element of (L2(Ω-circumflex))3, it is proved that the rate of convergence of the combined approximations in the norms of (W21(Ω-circumflex))3 is of the order O(h2-l +N-(2-l)) (l=0,1). (author)

  1. Efficient method for localized functions using domain transformation and Fourier sine series

    Jovanovic, Raka; Alharbi, Fahhad H

    2014-01-01

    An efficient approach to handle localized states by using spectral methods (SM) in one and three dimensions is presented. The method consists of transformation of the infinite domain to the bounded domain in $(0, \\pi)$ and using the Fourier sine series as a set of basis functions for the SM. It is shown that with an appropriate choice of transformation functions, this method manages to preserve the good properties of original SMs; more precisely, superb computational efficiency when high level of accuracy is necessary. This is made possible by analytically exploiting the properties of the transformation function and the Fourier sine series. An especially important property of this approach is the possibility of calculating the Hartree energy very efficiently. This is done by exploiting the positive properties of the sine series as a basis set and conducting an extinctive part of the calculations analytically. We illustrate the efficiency of this method and implement it to solve the Poisson's and Helmholtz equ...

  2. Reproducibility of Scleral Spur Identification and Angle Measurements Using Fourier Domain Anterior Segment Optical Coherence Tomography

    Ricardo J. Cumba; Sunita Radhakrishnan; Nicholas P. Bell; Kundandeep S. Nagi; Alice Z. Chuang; Lin, Shan C.; Mankiewicz, Kimberly A.; Feldman, Robert M.

    2012-01-01

    Purpose. To evaluate intraobserver and interobserver agreement in locating the scleral spur landmark (SSL) and anterior chamber angle measurements obtained using Fourier Domain Anterior Segment Optical Coherence Tomography (ASOCT) images. Methods. Two independent, masked observers (SR and AZC) identified SSLs on ASOCT images from 31 eyes with open and nonopen angles. A third independent reader, NPB, adjudicated SSL placement if identifications differed by more than 80  μ m. Nine months later,...

  3. Joint multi-mode dispersion extraction in Fourier and space time domains

    Bose, Sandip; Valero, Henri-Pierre

    2013-01-01

    In this paper we present a novel broadband approach for the extraction of dispersion curves of multiple time frequency overlapped dispersive modes such as in borehole acoustic data. The new approach works jointly in the Fourier and space time domains and, in contrast to existing space time approaches that mainly work for time frequency separated signals, efficiently handles multiple signals with significant time frequency overlap. The proposed method begins by exploiting the slowness (phase and group) and time location estimates based on frequency-wavenumber (f-k) domain sparsity penalized broadband dispersion extraction method as presented in \\cite{AeronTSP2011}. In this context we first present a Cramer Rao Bound (CRB) analysis for slowness estimation in the (f-k) domain and show that for the f-k domain broadband processing, group slowness estimates have more variance than the phase slowness estimates and time location estimates. In order to improve the group slowness estimates we exploit the time compactne...

  4. Optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling

    Li, Y.; Han, B.; Métivier, L.; Brossier, R.

    2016-09-01

    We investigate an optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling. An anti-lumped mass strategy is incorporated to minimize the numerical dispersion. The optimal finite-difference coefficients and the mass weighting coefficients are obtained by minimizing the misfit between the normalized phase velocities and the unity. An iterative damped least-squares method, the Levenberg-Marquardt algorithm, is utilized for the optimization. Dispersion analysis shows that the optimal fourth-order scheme presents less grid dispersion and anisotropy than the conventional fourth-order scheme with respect to different Poisson's ratios. Moreover, only 3.7 grid-points per minimum shear wavelength are required to keep the error of the group velocities below 1%. The memory cost is then greatly reduced due to a coarser sampling. A parallel iterative method named CARP-CG is used to solve the large ill-conditioned linear system for the frequency-domain modeling. Validations are conducted with respect to both the analytic viscoacoustic and viscoelastic solutions. Compared with the conventional fourth-order scheme, the optimal scheme generates wavefields having smaller error under the same discretization setups. Profiles of the wavefields are presented to confirm better agreement between the optimal results and the analytic solutions.

  5. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 1: Theory and method

    Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  6. Sampling reconstruction of N-dimensional bandlimited images after multilinear filtering in fractional Fourier domain

    Wei, Deyun; Li, Yuanmin

    2013-05-01

    This paper addresses the problem of multidimensional signal reconstruction from generalized samples in fractional Fourier domain including the deterministic case and the stochastic case. The generalized sampling expansion is investigated for the case where the fractional bandlimited input depends on N real variable, i.e., f(t)=f(t1,⋯,tN) and is used as a common input to a parallel bank of m independent N dimensional linear fractional Fourier filters Hα,k(u), k=1,⋯,m. For the deterministic input, the input is assumed to have its N dimensional fractional Fourier transform bandlimited to the frequency rang |ui|≤Ωi, for i=1,⋯,N. If m, the number of fractional Fourier filters, is written as a product of positive integers in the form m=m1m2⋯mN, and if the fractional bandlimited input f(t) is processed by fractional Fourier filter Hα,k(u)resulting m outputs gk(t), then f(t) can be reconstructed in terms of the samples gk(nT), each output being sampled at the identical rates of Ω1 csc α/m1π, Ω2 csc α/m2π,⋯, ΩN csc α/mNπ samples/second in t1,⋯,tN respectively. This contrasts with the rates of Ω1 csc α/π, Ω2 csc α/π,⋯, ΩN csc α/π in t1,⋯,tN needed for reconstruction of the unfiltered input f(t). Input sampling expansions in terms of samples of the output filters are given for both deterministic and stochastic inputs, the generalized sampling expansion for random input having the same form as for the deterministic case but interpreted in the mean-square sense. Our formulation and results are general and include derivative sampling and periodic nonuniform sampling in the fractional Fourier domain for multidimensional signals as special case. Finally, the potensional application of the multidimensional generalized sampling is presented to show the advantage of the theory. Especially, the application of multidimensional generalized sampling in the context of the image scaling about image super-resolution is

  7. Convergence Properties of Generalized Fourier Series on a Parallel Hexagon Domain

    WANG SHU-YUN; LIANG XUE-ZHANG; FU YAO; SUN XUE-NAN

    2009-01-01

    A new Rogosinski-type kernel function is constructed using kernel function of partial sums Sn(f; t) of generalized Fourier series on a parallel hexagon domain Ω associating with three-direction partition. We prove that an operator Wn(f; t) with the new kernel function converges uniformly to any continuous function f(t) ∈ C*(Ω) (the space of all continuous functions with period Ω) on Ω. Moreover, the convergence order of the operator is presented for the smooth approached function.

  8. Evaluation of proton-recoil-spectra including inverse filtering in the Fourier domain

    The evaluation of proton recoil spectra having large statistical fluctuations can be improved by the following operations in Fourier domain: smoothing, using a Gaussian function as low pass frequency filter and inverse filtering with the measured response function before multiplying by -2πiν as differentiation. This results in pure Gaussian shapes for the neutron lines. The line intensities are then no longer influenced by correlated ripples outside the lines and the errors in determining the line intensities are reduced by widening by lines. (orig.)

  9. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  10. Measurement of intraocular distances in human eyes by using Fourier domain low-coherence interferometry

    Feng, Liang; Zhu, Lida; Li, Qinghua; Ma, Zhenhe; Wang, Bo; Wang, Yi

    2016-03-01

    We introduce a system for rapidly measuring the intraocular distances of human eyes in vivo with high sensitivity by using Fourier domain low-coherence interferometry. The system mainly consisting of a rapid focus displacement unit and a reference arm which has a variable optical path length. This system is capable of providing a complete biometrical assessment of a human eye in a single measurement procedure, including cornea thickness, anterior chamber depth, lens thickness, and axial length. The system is experimentally verified by measuring the four parameters of a human eye in vivo.

  11. In-vivo Fourier domain optical coherence tomography as a new tool for investigation of vasodynamics in the mouse model

    Meissner, Sven; Müller, Gregor; Walther, Julia; Morawietz, Henning; Koch, Edmund

    2009-05-01

    In-vivo imaging of the vascular system can provide novel insight into the dynamics of vasoconstriction and vasodilation. Fourier domain optical coherence tomography (FD-OCT) is an optical, noncontact imaging technique based on interferometry of short-coherent near-infrared light with axial resolution of less than 10 μm. In this study, we apply FD-OCT as an in-vivo imaging technique to investigate blood vessels in their anatomical context using temporally resolved image stacks. Our chosen model system is the murine saphenous artery and vein, due to their small inner vessel diameters, sensitive response to vasoactive stimuli, and advantageous anatomical position. The vascular function of male wild-type mice (C57BL/6) is determined at the ages of 6 and 20 weeks. Vasoconstriction is analyzed in response to dermal application of potassium (K+), and vasodilation in response to sodium nitroprusside (SNP). Vasodynamics are quantified from time series (75 sec, 4 frames per sec, 330×512 pixels per frame) of cross sectional images that are analyzed by semiautomated image processing software. The morphology of the saphenous artery and vein is determined by 3-D image stacks of 512×512×512 pixels. Using the FD-OCT technique, we are able to demonstrate age-dependent differences in vascular function and vasodynamics.

  12. Visualization of hair follicles using high-speed optical coherence tomography based on a Fourier domain mode locking laser

    Tsai, M.-T.; Chang, F.-Y.

    2012-04-01

    In this study, a swept-source optical coherence tomography (SS-OCT) system with a Fourier domain mode locking (FDML) laser is proposed for a dermatology study. The homemade FDML laser is one kind of frequency-sweeping light source, which can provide output power of >20 mW and an output spectrum of 65 nm in bandwidth centered at 1300 nm, enabling imaging with an axial resolution of 12 μm in the OCT system. To eliminate the forward scans from the laser output and insert the delayed backward scans, a Mach-Zehnder configuration is implemented. Compared with conventional frequency-sweeping light sources, the FDML laser can achieve much higher scan rates, as high as ˜240 kHz, which can provide a three-dimensional imaging rate of 4 volumes/s. Furthermore, the proposed high-speed SS-OCT system can provide three-dimensional (3D) images with reduced motion artifacts. Finally, a high-speed SS-OCT system is used to visualize hair follicles, demonstrating the potential of this technology as a tool for noninvasive diagnosis of alopecia.

  13. Ultrahigh-speed imaging of the rat retina using ultrahigh-resolution spectral/Fourier domain OCT

    Liu, Jonathan J.; Potsaid, Benjamin; Chen, Yueli; Gorczynska, Iwona; Srinivasan, Vivek J.; Duker, Jay S.; Fujimoto, James G.

    2010-02-01

    We performed OCT imaging of the rat retina at 70,000 axial scans per second with ~3 μm axial resolution. Three-dimensional OCT (3D-OCT) data sets of the rat retina were acquired. The high speed and high density data sets enable improved en face visualization by reducing eye motion artifacts and improve Doppler OCT measurements. Minimal motion artifacts were visible and the OCT fundus images offer more precise registration of individual OCT images to retinal fundus features. Projection OCT fundus images show features such as the nerve fiber layer, retinal capillary networks and choroidal vasculature. Doppler OCT images and quantitative measurements show pulsatility in retinal blood vessels. Doppler OCT provides noninvasive in vivo quantitative measurements of retinal blood flow properties and may benefit studies of diseases such as glaucoma and diabetic retinopathy. Ultrahigh speed imaging using ultrahigh resolution spectral / Fourier domain OCT promises to enable novel protocols for measuring small animal retinal structure and retinal blood flow. This non-invasive imaging technology is a promising tool for monitoring disease progression in rat and mouse models to assess ocular disease pathogenesis and response to treatment.

  14. Homogenization of the evolution Stokes equation in a perforated domain with a stochastic Fourier boundary condition

    Bessaih, Hakima

    2015-04-01

    The evolution Stokes equation in a domain containing periodically distributed obstacles subject to Fourier boundary condition on the boundaries is considered. We assume that the dynamic is driven by a stochastic perturbation on the interior of the domain and another stochastic perturbation on the boundaries of the obstacles. We represent the solid obstacles by holes in the fluid domain. The macroscopic (homogenized) equation is derived as another stochastic partial differential equation, defined in the whole non perforated domain. Here, the initial stochastic perturbation on the boundary becomes part of the homogenized equation as another stochastic force. We use the twoscale convergence method after extending the solution with 0 in the holes to pass to the limit. By Itô stochastic calculus, we get uniform estimates on the solution in appropriate spaces. In order to pass to the limit on the boundary integrals, we rewrite them in terms of integrals in the whole domain. In particular, for the stochastic integral on the boundary, we combine the previous idea of rewriting it on the whole domain with the assumption that the Brownian motion is of trace class. Due to the particular boundary condition dealt with, we get that the solution of the stochastic homogenized equation is not divergence free. However, it is coupled with the cell problem that has a divergence free solution. This paper represents an extension of the results of Duan and Wang (Comm. Math. Phys. 275:1508-1527, 2007), where a reaction diffusion equation with a dynamical boundary condition with a noise source term on both the interior of the domain and on the boundary was studied, and through a tightness argument and a pointwise two scale convergence method the homogenized equation was derived. © American Institute of Mathematical Sciences.

  15. A method for estimating spatial resolution of real image in the Fourier domain

    Mizutani, Ryuta; Takekoshi, Susumu; Inomoto, Chie; Nakamura, Naoya; Itokawa, Masanari; Arai, Makoto; Oshima, Kenichi; Takeuchi, Akihisa; Uesugi, Kentaro; Terada, Yasuko; Suzuki, Yoshio

    2016-01-01

    Spatial resolution is a fundamental parameter in structural sciences. In crystallography, the resolution is determined from the detection limit of high-angle diffraction in reciprocal space. In electron microscopy, correlation in the Fourier domain is used for estimating the resolution. In this paper, we report a method for estimating the spatial resolution of real images from a logarithmic intensity plot in the Fourier domain. The logarithmic intensity plots of test images indicated that the full width at half maximum of a Gaussian point-spread function can be estimated from the images. The spatial resolution of imaging X-ray microtomography using Fresnel zone-plate optics was also estimated with this method. A cross section of a test object visualized with the imaging microtomography indicated that square-wave patterns up to 120-nm pitch were resolved. The logarithmic intensity plot was calculated from a tomographic cross section of brain tissue. The full width at half maximum of the point spread function e...

  16. Robust Global Image Registration Based on a Hybrid Algorithm Combining Fourier- and Spatial-domain Techniques

    Crabtree, P.; McNicholl, P.; Seanor, C.; Murray-Krezan, J.

    2012-09-01

    A variety of image registration techniques have been investigated for applications such as image analysis, fusion, compression, enhancement, and creating mosaics. In particular, robust registration is a key component for successful multi-frame processing aimed at super-resolution or high dynamic range imaging. Image registration techniques are broadly categorized as global (area) or feature-based, and can also be classified as being performed in either the Fourier- or spatial-domain. Spatial domain methods are typically used for applications requiring accurate estimation of sub-pixel motion, such as multi-frame super-resolution based on de-aliasing. However, these techniques often rely on the availability of a priori information (good initial guess), and are therefore limited in terms of the dynamic range of the global motion estimates. A Gaussian pyramid approach is one standard method for extending the region of convergence of spatial domain techniques. On the other hand, Fourier domain-based correlation techniques such as the log-polar FFT method provide fast and reasonably accurate estimates of global shifts, rotation, and uniform scale changes, and tend to perform well over a large range of frame-to-frame motion magnitudes. In this paper we explore several possible hybrid algorithms for robust global registration based on combining the log-polar FFT and spatial-domain techniques. This includes the straightforward use of the log-polar FFT algorithm to generate an initial guess for use by a spatial domain algorithm, as well as the intertwining of the two methods by applying both global correlation and spatial domain registration at each relevant step within the log-polar FFT algorithm. In addition, we explore the benefits of normalized gradient correlation in performing the coarse log-polar FFT registration. The use of normalized gradient correlation, as opposed to phase-only correlation, has recently been proposed for improving the log-polar FFT method in terms

  17. Gabor-domain optical coherence microscopy with integrated dual-axis MEMS scanner for fast 3D imaging and metrology

    Canavesi, Cristina; Cogliati, Andrea; Hayes, Adam; Santhanam, Anand P.; Tankam, Patrice; Rolland, Jannick P.

    2015-10-01

    Fast, robust, nondestructive 3D imaging is needed for characterization of microscopic structures in industrial and clinical applications. A custom micro-electromechanical system (MEMS)-based 2D scanner system was developed to achieve 55 kHz A-scan acquisition in a Gabor-domain optical coherence microscopy (GD-OCM) instrument with a novel multilevel GPU architecture for high-speed imaging. GD-OCM yields high-definition volumetric imaging with dynamic depth of focusing through a bio-inspired liquid lens-based microscope design, which has no moving parts and is suitable for use in a manufacturing setting or in a medical environment. A dual-axis MEMS mirror was chosen to replace two single-axis galvanometer mirrors; as a result, the astigmatism caused by the mismatch between the optical pupil and the scanning location was eliminated and a 12x reduction in volume of the scanning system was achieved. Imaging at an invariant resolution of 2 μm was demonstrated throughout a volume of 1 × 1 × 0.6 mm3, acquired in less than 2 minutes. The MEMS-based scanner resulted in improved image quality, increased robustness and lighter weight of the system - all factors that are critical for on-field deployment. A custom integrated feedback system consisting of a laser diode and a position-sensing detector was developed to investigate the impact of the resonant frequency of the MEMS and the driving signal of the scanner on the movement of the mirror. Results on the metrology of manufactured materials and characterization of tissue samples with GD-OCM are presented.

  18. EUROPEANA AND 3D

    D. Pletinckx

    2012-09-01

    Full Text Available The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  19. INTERFERENCE MITIGATING BASED ON FRACTIONAL FOURIER TRANSFORM IN TRANSFORM DOMAIN COMMUNICATION SYSTEM

    Wang Chuandan; Zhang Zhongpei; Li Shaoqian

    2007-01-01

    The method of FRactional Fourier Transform (FRFT) is introduced to Transform Domain Communication System (TDCS) for signal transforming in the paper after theoretical analysis. The method yields optimal Basis Function (BF) by FRFT with optimal transform angle. The TDCS using the proposed method has wider usable spectrum, stronger robustness and better ability of anti non-stationary jamming than using usual methods, such as Fourier Transform (FT), Auto Regressive (AR), Wavelet Transform (WT), etc. The main simulation results are as follows. First, the Bit Error Rate (BER) Pb is close to theoretical bound of no jamming no matter in single tone or in linear chirp interference. Second, the interference-to-signal ratio J/E is at least 12dB more than that of Direct Spread Spectrum System (DSSS) under the same BER if the spectrum hopping-to-signal ratio is 1:20 in chirp plus hopping interfering. Third, the Eb/No (when estimation difference is 90% between transmitter and receiver) is about 3.5dB or about 0.5dB (when estimation difference is 10% between transmitter and receiver) more than that of theoretical result when no estimation difference under Pb = 10-2.

  20. Programmable multiple true-time-delay elements based on a Fourier-domain optical processor.

    Yi, Xiaoke; Li, Liwei; Huang, Thomas X H; Minasian, Robert A

    2012-02-15

    A new technique to realize an array of multiple true-time-delay elements, which can be independently and continuously tuned, is reported. It is based on a WDM parallel signal processing approach in conjunction with a diffraction-based Fourier-domain optical signal processor. Programmable linear optical phase transfer functions are realized to obtain different electrical true-time delays. The technique can scale to a large number of wideband true-time-delay lines, with continuously tunable programmable delay. Results demonstrate multiple true-time-delay elements with independent tuning control and verify the concept by tuning the free spectral range of a microwave photonic notch filter. To our best knowledge, this is the first demonstration of multiple independently controllable true-time-delay lines for microwave photonic systems. PMID:22344122

  1. A novel parameter-induced stochastic resonance phenomena in fractional Fourier domain

    Lin, Lifeng; Wang, Huiqi; Lv, Wangyong; Zhong, Suchuan

    2016-08-01

    The parameter-induced stochastic resonance (SR) phenomenon in a novel self-adaptive dynamical system driven by linear frequency modulated (LFM) signal and additive noise is considered from the view of the signal-to-noise ratio (SNR). It is found that the dynamical system can be perfectly analyzed by equivalently transforming it into a traditional first-order linear dynamical system driven by periodic signal and additive noise in fractional Fourier transform (FrFT) domain with an optimal rotated angle, and the theoretical analysis and simulation results show that output SNR exhibits the SR behavior when it is plotted as a function of the system parameter. Furthermore, the optimal value of adjusted parameter is obtained, and the possible area of SNR gain is theoretically determined only by center-frequency and modulated frequency of the driving LFM signal.

  2. Broadband Fourier domain mode-locked laser for optical coherence tomography at 1060 nm

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang;

    2012-01-01

    Optical coherence tomography (OCT) in the 1060nm range is interesting for in vivo imaging of the human posterior eye segment (retina, choroid, sclera) due to low absorption in water and deep penetration into the tissue. Rapidly tunable light sources, such as Fourier domain mode-locked (FDML) lasers......, enable acquisition of densely sampled three-dimensional datasets covering a wide field of view. However, semiconductor optical amplifiers (SOAs)-the typical laser gain media for swept sources-for the 1060nm band could until recently only provide relatively low output power and bandwidth. We have...... implemented an FDML laser using a new SOA featuring broad gain bandwidth and high output power. The output spectrum coincides with the wavelength range of minimal water absorption, making the light source ideal for OCT imaging of the posterior eye segment. With a moderate SOA current (270 mA) we achieve up...

  3. MEMS motor-based common-path endoscopic Fourier-domain OCT

    Wang, Rui; Yun, Julie X.; Yuan, Xiaocong; Li, Bo; Goodwin, Richard; Markwald, Roger; Gao, Bruce

    2011-03-01

    A rotational microelectromechanical(MEMS) motor based common-path Fourier-domain OCT for endoscopic imaging, which uses the interface between the index-match oil and distal-end surface of the fiber as a self-aligned reference mirror, is reported. The reference intensity is easy to be tuned by altering the index of the match oil to optimize the signal to noise ratio of the system. An external Michelson interferometer is used to compensate for the optical path difference and dispersion mismatch to the index-match oil and the GRIN lens. Due to this common-path design, the OCT signal is immune to bending or stretching of the endoscopic catheter. The outer diameter of the probe is 3 mm, and 22 circumferential-scans and 50,000 lines A-scans are obtained in one second.

  4. Color image encryption using iterative phase retrieve process in quaternion Fourier transform domain

    Sui, Liansheng; Duan, Kuaikuai

    2015-02-01

    A single-channel color image encryption method is proposed based on iterative phase iterative process in quaternion Fourier transform domain. First, three components of the plain color image is confused respectively by using cat map. Second, the confused components are combined into a pure quaternion image, which is encode to the phase only function by using an iterative phase retrieval process. Finally, the phase only function is encrypted into the gray scale ciphertext with stationary white noise distribution based on the chaotic diffusion, which has camouflage property to some extent. The corresponding plain color image can be recovered from the ciphertext only with correct keys in the decryption process. Simulation results verify the feasibility and effectiveness of the proposed method.

  5. Double image encryption based on random phase encoding in the fractional Fourier domain.

    Tao, Ran; Xin, Yi; Wang, Yue

    2007-11-26

    A novel image encryption method is proposed by utilizing random phase encoding in the fractional Fourier domain to encrypt two images into one encrypted image with stationary white distribution. By applying the correct keys which consist of the fractional orders, the random phase masks and the pixel scrambling operator, the two primary images can be recovered without cross-talk. The decryption process is robust against the loss of data. The phase-based image with a larger key space is more sensitive to keys and disturbances than the amplitude-based image. The pixel scrambling operation improves the quality of the decrypted image when noise perturbation occurs. The novel approach is verified by simulations. PMID:19550895

  6. Fourier domain mode-locked swept source at 1050 nm based on a tapered amplifier

    Marschall, Sebastian; Klein, Thomas; Wieser, Wolfgang;

    2010-01-01

    While swept source optical coherence tomography (OCT) in the 1050 nm range is promising for retinal imaging, there are certain challenges. Conventional semiconductor gain media have limited output power, and the performance of high-speed Fourier domain mode-locked (FDML) lasers suffers from...... air (~11 μm in tissue) in OCT measurements. As our work shows, tapered amplifiers are suitable gain media for swept sources at 1050 nm with increased output power, while high gain counteracts dispersion effects in an FDML laser....... achieved stable FDML operation, exploiting the full bandwidth of the tapered amplifier despite high dispersion. The light source operates at a repetition rate of 116 kHz with an effective average output power in excess of 30 mW. With a total sweep range of 70 nm, we achieved an axial resolution of 15 μm in...

  7. Time-encoded Raman scattering (TICO-Raman) with Fourier domain mode locked (FDML) lasers

    Karpf, Sebastian; Eibl, Matthias; Wieser, Wolfgang; Klein, Thomas; Huber, Robert

    2015-07-01

    We present a new concept for performing stimulated Raman spectroscopy and microscopy by employing rapidly wavelength swept Fourier Domain Mode locked (FDML) lasers [1]. FDML lasers are known for fastest imaging in swept-source optical coherence tomography [2, 3]. We employ this continuous and repetitive wavelength sweep to generate broadband, high resolution stimulated Raman spectra with a new, time-encoded (TICO) concept [4]. This allows for encoding and detecting the stimulated Raman gain on the FDML laser intensity directly in time. Therefore we use actively modulated pump lasers, which are electronically synchronized to the FDML laser, in combination with a fast analog-to-digital converter (ADC) at 1.8 GSamples/s. We present hyperspectral Raman images with color-coded, molecular contrast.

  8. Open geometry Fourier modal method: Modeling nanophotonic structures in infinite domains

    Häyrynen, Teppo; Gregersen, Niels

    2016-01-01

    We present an open geometry Fourier modal method based on a new combination of open boundary conditions and an efficient $k$-space discretization. The open boundary of the computational domain is obtained using basis functions that expand the whole space, and the integrals subsequently appearing due to the continuous nature of the radiation modes are handled using a discretization based on non-uniform sampling of the $k$-space. We apply the method to a variety of photonic structures and demonstrate that our method leads to significantly improved convergence with respect to the number of degrees of freedom, which may pave the way for more accurate and efficient modeling of open nanophotonic structures.

  9. Boundary layers and incompressible Navier-Stokes-Fourier limit of the Boltzmann Equation in Bounded Domain (I)

    Jiang, Ning; Masmoudi, Nader

    2015-01-01

    We establish the incompressible Navier-Stokes-Fourier limit for solutions to the Boltzmann equation with a general cut-off collision kernel in a bounded domain. Appropriately scaled families of DiPerna-Lions-(Mischler) renormalized solutions with Maxwell reflection boundary conditions are shown to have fluctuations that converge as the Knudsen number goes to zero. Every limit point is a weak solution to the Navier-Stokes-Fourier system with different types of boundary conditions depending on ...

  10. Optimal convergence recovery for the Fourier-finite-element approximation of Maxwell's equations in non-smooth axisymmetric domains

    Three-dimensional time-harmonic Maxwell's problems in axisymmetric domains Ω-circumflex with edges and conical points on the boundary are treated by means of the Fourier-finite-element method. The Fourier-fem combines the approximating Fourier series expansion of the solution with respect to the rotational angle using trigonometric polynomials of degree N (N → ∞), with the finite element approximation of the Fourier coefficients on the plane meridian domain Ωa is a subset of R+2 of Ω-circumflex with mesh size h (h → 0). The singular behaviors of the Fourier coefficients near angular points of the domain Ωa are fully described by suitable singular functions and treated numerically by means of the singular function method with the finite element method on graded meshes. It is proved that the rate of convergence of the mixed approximations in H1(Ω-circumflex)3 is of the order O (h+N-1) as known for the classical Fourier-finite-element approximation of problems with regular solutions. (author)

  11. The Wavenumber Algorithm: Fast Fourier-Domain Imaging Using Full Matrix Capture

    Hunter, A. J.; Drinkwater, B. W.; Wilcox, P. D.

    2009-03-01

    We develop a Fourier-domain approach to full matrix imaging based on the wavenumber algorithm used in synthetic aperture radar and sonar. The extension to the wavenumber algorithm for full matrix capture is described and the performance of the new algorithm is compared to the total focusing method (TFM), which we use as a representative benchmark for the time-domain algorithms. The wavenumber algorithm provides a mathematically rigorous solution to the inverse problem for the assumed forward wave propagation model, whereas the TFM employs heuristic delay-and-sum beamforming. Consequently, the wavenumber algorithm has an improved point-spread function and provides better imagery. However, the major advantage of the wavenumber algorithm is its superior computational performance. For large arrays and images, the wavenumber algorithm is several orders of magnitude faster than the TFM. On the other hand, the key advantage of the TFM is its flexibility. The wavenumber algorithm requires a regularly sampled linear array, while the TFM can handle arbitrary imaging geometries. The TFM and the wavenumber algorithm are compared using simulated and experimental data.

  12. Laplace-Fourier-Domain Full Waveform Inversion of Deep-Sea Seismic Data Acquired with Limited Offsets

    Cho, Yongchae; Ha, Wansoo; Kim, Youngseo; Shin, Changsoo; Singh, Satish; Park, Eunjin

    2016-03-01

    Laplace-Fourier-domain full waveform inversion is considered one of the most reliable schemes to alleviate the drawbacks of conventional frequency-domain inversion, such as local minima. Using a damped wavefield, we can reduce the possibility of converging to local minima and produce an accurate long-wavelength velocity model. Then, we can obtain final inversion results using high-frequency components and low damping coefficients. However, the imaging area is limited because this scheme uses a damped wavefield that makes the magnitudes of the gradient and residual small in deep areas. Generally, the imaging depth of Laplace-Fourier-domain full waveform inversion is half the streamer length. Thus, dealing with seismic data in the deep-sea layer is difficult. The deep-sea layer reduces the amplitude of signals and acts as an obstacle for computing an exact gradient image. To reduce the water layer's effect, we extrapolated the wavefield with a downward continuation and performed refraction tomography. Then, we performed Laplace-Fourier-domain full waveform inversion using the refraction tomography results as an initial model. After obtaining a final velocity model, we verified the inversion results using Kirchhoff migration. We presented common image gathers and a synthetic seismogram of Sumatra field data to prove the reliability of the velocity model obtained by Laplace-Fourier-domain full waveform inversion. Through the test, we concluded that Laplace-Fourier-domain full waveform inversion with refraction tomography of the downward-continued wavefield recovers the subsurface structures located at depth despite a relatively short streamer length compared to the water depth.

  13. A unified framework for 3D radiation therapy and IMRT planning: plan optimization in the beamlet domain by constraining or regularizing the fluence map variations

    The purpose of this work is to demonstrate that physical constraints on fluence gradients in 3D radiation therapy (RT) planning can be incorporated into beamlet optimization explicitly by direct constraint on the spatial variation of the fluence maps or implicitly by using total-variation regularization (TVR). The former method forces the fluence to vary in accordance with the known form of a wedged field and latter encourages the fluence to take the known form of the wedged field by requiring the derivatives of the fluence maps to be piece-wise constant. The performances of the proposed methods are evaluated by using a brain cancer case and a head and neck case. It is found that both approaches are capable of providing clinically sensible 3D RT solutions with monotonically varying fluence maps. For currently available 3D RT delivery schemes based on the use of customized physical or dynamic wedges, constrained optimization seems to be more useful because the optimized fields are directly deliverable. Working in the beamlet domain provides a natural way to model the spatial variation of the beam fluence. The proposed methods take advantage of the fact that 3D RT is a special form of intensity-modulated radiation therapy (IMRT) and finds the optimal plan by searching for fields with a certain type of spatial variation. The approach provides a unified framework for 3D CRT and IMRT plan optimization. (note)

  14. Combining Public Domain and Professional Panoramic Imagery for the Accurate and Dense 3d Reconstruction of the Destroyed Bel Temple in Palmyra

    Wahbeh, W.; Nebiker, S.; Fangi, G.

    2016-06-01

    This paper exploits the potential of dense multi-image 3d reconstruction of destroyed cultural heritage monuments by either using public domain touristic imagery only or by combining the public domain imagery with professional panoramic imagery. The focus of our work is placed on the reconstruction of the temple of Bel, one of the Syrian heritage monuments, which was destroyed in September 2015 by the so called "Islamic State". The great temple of Bel is considered as one of the most important religious buildings of the 1st century AD in the East with a unique design. The investigations and the reconstruction were carried out using two types of imagery. The first are freely available generic touristic photos collected from the web. The second are panoramic images captured in 2010 for documenting those monuments. In the paper we present a 3d reconstruction workflow for both types of imagery using state-of-the art dense image matching software, addressing the non-trivial challenges of combining uncalibrated public domain imagery with panoramic images with very wide base-lines. We subsequently investigate the aspects of accuracy and completeness obtainable from the public domain touristic images alone and from the combination with spherical panoramas. We furthermore discuss the challenges of co-registering the weakly connected 3d point cloud fragments resulting from the limited coverage of the touristic photos. We then describe an approach using spherical photogrammetry as a virtual topographic survey allowing the co-registration of a detailed and accurate single 3d model of the temple interior and exterior.

  15. Detection of 320 Gb/s Nyquist OTDM by polarization-insensitive time-domain optical Fourier transformation

    Hu, Hao; Kong, Deming; Palushani, Evarist;

    2013-01-01

    320 Gb/s Nyquist-OTDM is generated by rectangular filtering with a bandwidth of 320 GHz and received by polarization-insensitive time-domain optical Fourier transformation (TD-OFT) followed by passive filtering. After the time-to-frequency mapping in the TD-OFT, the Nyquist-OTDM is converted into a...

  16. Nonlinear optical frequency conversion of an amplified Fourier Domain Mode Locked (FDML) laser.

    Leonhardt, Rainer; Biedermann, Benjamin R; Wieser, Wolfgang; Huber, Robert

    2009-09-14

    We report on the highly efficient non-linear optical frequency conversion of the wavelength swept output from a Fourier Domain Mode Locked (FDML) laser. Different concepts for power scaling of FDML lasers by post-amplification with active fibers are presented. A two-stage post-amplification of an FDML laser with an amplification factor of 300 up to a peak power of 1.5 W is used to supply sufficient power levels for non-linear conversion. Using a single-mode dispersion shifted fiber (DSF), we convert this amplified output that covers the region between 1541 nm and 1545 nm to a wavelength range from 1572 nm to 1663 nm via modulation instability (MI). For this four wave mixing process we observe an efficiency of approximately 40%. The anti-Stokes signal between 1435 nm and 1516 nm was observed with lower conversion efficiency. In addition to shifting the wavelength, the effect of MI also enables a substantial increase in the wavelength sweep rate of the FDML laser by a factor of approximately 50 to 0.55 nm/ns. PMID:19770897

  17. Quantization-Based Digital Audio Watermarking in Discrete Fourier Transform Domain

    Senbin Yang

    2010-04-01

    Full Text Available To explore the principle and performances of Quantization Index Modulation (QIM watermarking algorithm, the realization schemes of this algorithm in Discrete Fourier Transform (DFT domain are classified into three types according to the differences of quantizer parameters, and then the illustrative diagrams of these schemes are given, so the properties of transparency, robustness and capacity of each scheme are concluded. The scheme with best distortion-robustness trade-off is found on that basis. The more efficient embedding and extracting formulas of this scheme are given, and the performances are researched by theoretical analysis rather than computer simulation. The conclusions show that the transparency is in proportion to the square of quantization step and small DFT coefficient leads to poor transparency. The robustness to Additive White Gaussian Noise (AWGN only relates to the quantization step and the algorithm is susceptible to amplitude scale and resampling attacks. The possible capacity is Fo/2 bits per second, which can satisfy various watermarking applications. To improve the robustness, an adaptive quantization algorithm based on masking properties of the Human Auditory System (HAS is proposed at the end of this paper, and the algorithm is evaluated in the analog channel environment and its robustness is proved by the results.

  18. Use of Fourier-Domain Optical Coherence Tomography to Evaluate Anterior Stromal Opacities in Donor Corneas

    Matthew R. Bald

    2013-01-01

    Full Text Available Purpose. To evaluate Fourier-domain optical coherence tomography (FD-OCT as an adjunct to traditional slit lamp examination of donor corneas with suspected Anterior Stromal Opacities. Methods. Seven corneas suspected of having anterior stromal opacities by slit lamp examination were evaluated with FD-OCT. Each cornea was evaluated to confirm the presence of opacity and, if present, the depth of opacity was measured. Results. The opacity depth ranged from 82 μm to 624 μm. The initial slit lamp impressions of five of the seven corneas were confirmed by OCT. In two corneas, the OCT findings were different from the initial slit lamp impressions. Slit lamp examination of the first cornea gave the impression of anterior stromal scarring, but OCT showed that the opacity was limited to the epithelium. Slit lamp examination of the second cornea suggested opacity limited to the epithelium, but OCT identified significant sub-Bowman's scarring. In all cases, the Eye Bank Technicians reported that the location and depth of corneal opacity were more sharply defined by OCT than by slit lamp. Conclusion. The high resolution of OCT makes it easier to determine the location of corneal opacities compared to slit lamp examinations. This enhanced visualization can improve decisions regarding transplant suitability of donor corneas.

  19. Application of Fourier Domain OCT Imaging Technology to the Anterior Segment of the Human Eye

    Wojtkowski, Maciej; Marcos, Susana; Ortiz, Sergio; Grulkowski, Ireneusz

    The anterior segment is the front part of the human eye, which forms the optical system and hence directly impacts vision. Traumatic or pathological changes in the anterior segment may lead to vision loss and, in some cases, even blindness. Since the eighteenth century, optical instrumentation for measuring and imaging the anterior segment of the human eye has been developing along with modern ophthalmology. The application of OCT to the anterior segment imaging is particularly of interest, since this could potentially provide substantial complementary information regarding the large-scale architecture of the cornea and the crystalline lens, or on small portions of tissue imaged with high spatial resolutions comparable to regular microscopy. Especially an introduction of Fourier domain detection in OCT has opened new frontiers in OCT ophthalmic applications. The resultant substantial speed improvement enables rapid image acquisition, helping to reduce artifacts due to patient motion. Thus, it is currently possible to perform high-speed, in vivo, three-dimensional volumetric imaging over large scales within a reasonable time limit and without reducing system sensitivity. This chapter describes the state-of the art OCT technology dedicated to anterior segment imaging and indicates all important parameters which are required for optimization of the performance of OCT instrument.

  20. Comparison of 3D Maximum intensity projection (MIP reconstruction and 2D T2 Half-Fourier Acquisition Single-Shot Turbo Spin-Echo (HASTE sequence in magnetic resonance cholangiopancreatography

    Fuad Julardžija

    2014-04-01

    Full Text Available Introduction: Magnetic resonance cholangiopancreatography (MRCP is a method that allows noninvasive visualization of pancreatobiliary tree and does not require contrast application. It is a modern method based on heavily T2-weighted imaging (hydrography, which uses bile and pancreatic secretions as a natural contrast medium. Certain weaknesses in quality of demonstration of pancreatobiliary tract can be observed in addition to its good characteristics. Our aim was to compare the 3D Maximum intensity projection (MIP reconstruction and 2D T2 Half-Fourier Acquisition Single-Shot Turbo Spin-Echo (HASTE sequence in magnetic resonance cholangiopancreatography.Methods: During the period of one year 51 patients underwent MRCP on 3T „Trio“ system. Patients of different sex and age structure were included, both outpatient and hospitalized. 3D MIP reconstruction and 2D T2 haste sequence were used according to standard scanning protocols.Results: There were 45.1% (n= 23 male and 54.9% (n=28 female patients, age range from 17 to 81 years. 2D T2 haste sequence was more susceptible to respiratory artifacts presence in 64% patients, compared to 3D MIP reconstruction with standard error (0.09, result significance indication (p=0.129 and confidence interval (0.46 to 0.81. 2D T2 haste sequences is more sensitive and superior for pancreatic duct demonstration compared to 3D MIP reconstruction with standard error (0.07, result significance indication (p=0.01 and confidence interval (0.59 to 0.87Conclusion: In order to make qualitative demonstration and analysis of hepatobiliary and pancreatic system on MR, both 2D T2 haste sequence in transversal plane and 3D MIP reconstruction are required.

  1. A 3D Finite-Difference BiCG Iterative Solver with the Fourier-Jacobi Preconditioner for the Anisotropic EIT/EEG Forward Problem

    Sergei Turovets; Vasily Volkov; Aleksej Zherdetsky; Alena Prakonina; Malony, Allen D.

    2014-01-01

    The Electrical Impedance Tomography (EIT) and electroencephalography (EEG) forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with th...

  2. Crystal Structure of the Mycoplasma arthritidis-Derived Mitogen in Apo Form Reveals a 3D Domain-Swapped Dimer

    Liu, L.; Li, Z; Guo, Y; VanVranken, S; Mourad, W; Li, H

    2010-01-01

    Mycoplasma arthritidis-derived mitogen (MAM) is a superantigen that can activate large fractions of T cells bearing particular V{beta} elements of T cell receptor. Here, we report the crystal structure of a MAM mutant K201A in apo form (unliganded) at 2.8-{angstrom} resolutions. We also partially refined the crystal structures of the MAM wild type and another MAM mutant L50A in apo forms at low resolutions. Unexpectedly, the structures of these apo MAM molecules display a three-dimensional domain-swapped dimer. The entire C-terminal domains of these MAM molecules are involved in the domain swapping. Functional analyses demonstrated that the K201A and L50A mutants do not show altered ability to bind to their host receptors and that they stimulate the activation of T cells as efficiently as does the wild type. Structural comparisons indicated that the 'reconstituted' MAM monomer from the domain-swapped dimer displays large differences at the hinge regions from the MAM{sub wt} molecule in the receptor-bound form. Further comparison indicated that MAM has a flexible N-terminal loop, implying that conformational changes could occur upon receptor binding.

  3. Imaging of the three-dimensional alveolar structure and the alveolar mechanics of a ventilated and perfused isolated rabbit lung with Fourier domain optical coherence tomography

    Popp, Alexander; Wendel, Martina; Knels, Lilla; Koch, T.; Koch, Edmund

    2006-01-01

    In this feasibility study, Fourier domain optical coherence tomography (FDOCT) is used for visualizing the 3-D structure of fixated lung parenchyma and to capture real-time cross sectional images of the subpleural alveolar mechanics in a ventilated and perfused isolated rabbit lung. The compact and modular setup of the FDOCT system allows us to image the first 500 µm of subpleural lung parenchyma with a 3-D resolution of 16×16×8 µm (in air). During mechanical ventilation, real-time cross sectional FDOCT images visualize the inflation and deflation of alveoli and alveolar sacks (acini) in successive images of end-inspiratory and end-expiratory phase. The FDOCT imaging shows the relation of local alveolar mechanics to the setting of tidal volume (VT), peak airway pressure, and positive end-expiratory pressure (PEEP). Application of PEEP leads to persistent recruitment of alveoli and acini in the end-expiratory phase, compared to ventilation without PEEP where alveolar collapse and reinflation are observed. The imaging of alveolar mechanics by FDOCT will help to determine the amount of mechanical stress put on the alveolar walls during tidal ventilation, which is a key factor in understanding the development of ventilator induced lung injury (VILI).

  4. A 3D Finite-Difference BiCG Iterative Solver with the Fourier-Jacobi Preconditioner for the Anisotropic EIT/EEG Forward Problem

    Sergei Turovets

    2014-01-01

    Full Text Available The Electrical Impedance Tomography (EIT and electroencephalography (EEG forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with the finite-difference method and the optimally preconditioned Conjugate Gradient- (CG- type iterative method for treatment of the discrete model. The numerical scheme includes the standard operations of summation and multiplication of sparse matrices and vector, as well as FFT, making it easy to implement and eligible for the effective parallel implementation. Some typical use cases for the EIT/EEG problems are considered demonstrating high efficiency of the proposed numerical technique.

  5. A 3D finite-difference BiCG iterative solver with the Fourier-Jacobi preconditioner for the anisotropic EIT/EEG forward problem.

    Turovets, Sergei; Volkov, Vasily; Zherdetsky, Aleksej; Prakonina, Alena; Malony, Allen D

    2014-01-01

    The Electrical Impedance Tomography (EIT) and electroencephalography (EEG) forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with the finite-difference method and the optimally preconditioned Conjugate Gradient- (CG-) type iterative method for treatment of the discrete model. The numerical scheme includes the standard operations of summation and multiplication of sparse matrices and vector, as well as FFT, making it easy to implement and eligible for the effective parallel implementation. Some typical use cases for the EIT/EEG problems are considered demonstrating high efficiency of the proposed numerical technique. PMID:24527060

  6. Fourier domain optical coherence tomography to assess the iridocorneal angle and correlation study in a large Caucasian population

    Fernández-Vigo, José Ignacio; García-Feijóo, Julián; Martínez-de-la-Casa, José María; García-Bella, Javier; Arriola-Villalobos, Pedro; Fernández-Pérez, Cristina; Fernández-Vigo, José Ángel

    2016-01-01

    Background Recently, novel anatomic parameters that can be measured by optical coherence tomography (OCT), have been identified as a more objective and accurate method of defining the iridocorneal angle. The aim of the present study is to measure the iridocorneal angle by Fourier domain (FD) OCT and to identify correlations between angle measurements and subject factors in a large healthy Caucasian population. Methods A cross sectional study was performed in 989 left eyes of 989 healthy subje...

  7. Light field display and 3D image reconstruction

    Iwane, Toru

    2016-06-01

    Light field optics and its applications become rather popular in these days. With light field optics or light field thesis, real 3D space can be described in 2D plane as 4D data, which we call as light field data. This process can be divided in two procedures. First, real3D scene is optically reduced with imaging lens. Second, this optically reduced 3D image is encoded into light field data. In later procedure we can say that 3D information is encoded onto a plane as 2D data by lens array plate. This transformation is reversible and acquired light field data can be decoded again into 3D image with the arrayed lens plate. "Refocusing" (focusing image on your favorite point after taking a picture), light-field camera's most popular function, is some kind of sectioning process from encoded 3D data (light field data) to 2D image. In this paper at first I show our actual light field camera and our 3D display using acquired and computer-simulated light field data, on which real 3D image is reconstructed. In second I explain our data processing method whose arithmetic operation is performed not in Fourier domain but in real domain. Then our 3D display system is characterized by a few features; reconstructed image is of finer resolutions than density of arrayed lenses and it is not necessary to adjust lens array plate to flat display on which light field data is displayed.

  8. Diagnostic capability of Fourier-Domain optical coherence tomography in early primary open angle glaucoma

    FANG Yuan; PAN Ying-zi; LI Mei; QIAO Rong-hua; CAI Yu

    2010-01-01

    Background Optical coherence tomography (OCT) is a high resolution noncontact imaging modality which can quantitatively detect the optic disc and retinal structure.This study was designed to evaluate the diagnostic capability of parameters of the optic disc, retinal nerve fiber layer thickness, and ganglion cell complex (GCC) using a new technology called Fourier-domain OCT (FD-OCT) for early primary open angle glaucoma (POAG) patients.Methods Two groups of patients, early perimetric damage POAG and normal subjects were included in this observational cross-sectional study.All patients underwent FD-OCT and visual field examination in addition to full ophthalmic examinations.Receiver operating characteristic curves (ROC) were studied for all parameters.The sensitivity and specificity for distinguishing between normal and early glaucomatous eyes, the areas under the receiver operating characteristic curves (AROC) and positive, negative likelihood ratios were evaluated for all the single parameters and selected combined parameters using arbitrary cutoffs.Results Thirty-four eyes of 34 early POAG patients and 42 eyes of 42 normal subjects were analyzed.Cup/disc (C/D)vertical ratio presented the best sensitivity and positive likelihood ratio for selected specificities (95% and 85%) which were 79.4% and 88.2%, 33.4 and 7.4, respectively.Among all single parameters, the C/D vertical ratio demonstrated the highest AROC which was at 0.930.The average thickness of circumpapillary RNFL on 3.45 mm showed the highest AROC among all of the peripapillary RNFL parameters.The sensitivity at selected specificity and AROC of GCC were not as high as C/D vertical ratio and RNFL AT on 3.45 mm.When the C/D vertical ratio, RNFL AT on 3.45 mm, and rim area were combined using a logistical diagnostic model, the AROC was raised to 0.949 but not significantly different from the top single parameter, C/D vertical ratio.Conclusions The key parameters obtained by FD-OCT were able to show the

  9. MEMS-based handheld fourier domain Doppler optical coherence tomography for intraoperative microvascular anastomosis imaging.

    Yong Huang

    Full Text Available To demonstrate the feasibility of a miniature handheld optical coherence tomography (OCT imager for real time intraoperative vascular patency evaluation in the setting of super-microsurgical vessel anastomosis.A novel handheld imager Fourier domain Doppler optical coherence tomography based on a 1.3-µm central wavelength swept source for extravascular imaging was developed. The imager was minimized through the adoption of a 2.4-mm diameter microelectromechanical systems (MEMS scanning mirror, additionally a 12.7-mm diameter lens system was designed and combined with the MEMS mirror to achieve a small form factor that optimize functionality as a handheld extravascular OCT imager. To evaluate in-vivo applicability, super-microsurgical vessel anastomosis was performed in a mouse femoral vessel cut and repair model employing conventional interrupted suture technique as well as a novel non-suture cuff technique. Vascular anastomosis patency after clinically successful repair was evaluated using the novel handheld OCT imager.With an adjustable lateral image field of view up to 1.5 mm by 1.5 mm, high-resolution simultaneous structural and flow imaging of the blood vessels were successfully acquired for BALB/C mouse after orthotopic hind limb transplantation using a non-suture cuff technique and BALB/C mouse after femoral artery anastomosis using a suture technique. We experimentally quantify the axial and lateral resolution of the OCT to be 12.6 µm in air and 17.5 µm respectively. The OCT has a sensitivity of 84 dB and sensitivity roll-off of 5.7 dB/mm over an imaging range of 5 mm. Imaging with a frame rate of 36 Hz for an image size of 1000(lateral×512(axial pixels using a 50,000 A-lines per second swept source was achieved. Quantitative vessel lumen patency, lumen narrowing and thrombosis analysis were performed based on acquired structure and Doppler images.A miniature handheld OCT imager that can be used for intraoperative evaluation of

  10. Application of multi-thread computing and domain decomposition to the 3-D neutronics Fem code Cronos

    The purpose of this paper is to present the parallelization of the flux solver and the isotopic depletion module of the code, either using Message Passing Interface (MPI) or OpenMP. Thread parallelism using OpenMP was used to parallelize the mixed dual FEM (finite element method) flux solver MINOS. Investigations regarding the opportunity of mixing parallelism paradigms will be discussed. The isotopic depletion module was parallelized using domain decomposition and MPI. An attempt at using OpenMP was unsuccessful and will be explained. This paper is organized as follows: the first section recalls the different types of parallelism. The mixed dual flux solver and its parallelization are then presented. In the third section, we describe the isotopic depletion solver and its parallelization; and finally conclude with some future perspectives. Parallel applications are mandatory for fine mesh 3-dimensional transport and simplified transport multigroup calculations. The MINOS solver of the FEM neutronics code CRONOS2 was parallelized using the directive based standard OpenMP. An efficiency of 80% (resp. 60%) was achieved with 2 (resp. 4) threads. Parallelization of the isotopic depletion solver was obtained using domain decomposition principles and MPI. Efficiencies greater than 90% were reached. These parallel implementations were tested on a shared memory symmetric multiprocessor (SMP) cluster machine. The OpenMP implementation in the solver MINOS is only the first step towards fully using the SMPs cluster potential with a mixed mode parallelism. Mixed mode parallelism can be achieved by combining message passing interface between clusters with OpenMP implicit parallelism within a cluster

  11. 3D Lithospheric Imaging by Time-Domain Full-Waveform Inversion of Teleseismic Body-Waves

    Beller, S.; Monteiller, V.; Operto, S.; Nolet, G.; Combe, L.; Metivier, L.; Virieux, J.; Nissen-Meyer, T.; Paul, A.

    2014-12-01

    With the deployment of dense seismic arrays and the continuous growth of computing facilities, full-waveform inversion (FWI) of teleseismic data has become a method of choice for high-resolution lithospheric imaging. FWI can be recast as a local optimization problem that seeks to estimate Earth's elastic properties by iteratively minimizing the misfit function between observed and modeled seismograms.In passive teleseismic configurations, the seismic source no longer corresponds to a point source embedded in the targeted medium but rather corresponds to a wavefront incoming from the outside of the model. We develop a 3-dimensional time-domain full-waveform inversion program that is more designed for this configuration. The gradient of the misfit function is efficiently computed with the adjoint-state method. A velocity-stress finite-difference time-domain modeling engine, which is interfaced with the so-called total-field/scattered-field method, is used to propagate in the targeted medium the incident wavefield inferred from a global Earth simulation (AxiSEM). Such interfacing is required to account for the multiple arrivals in the incoming wavefield and the sphericity of the Earth. Despite the limited number of nearly plane-wave sources, the interaction of the incident wavefield with the topography (P-Sv conversions and P-P reflections acting as secondary sources) provides a suitable framework to record both transmitted wavefields and reflected wavefields from lithospheric reflectors. These recordings of both transmitted and reflected waves makes FWI amenable to a broadband-wavenumber (i.e., high resolution) reconstruction of the lithosphere.Feasibility of the method is assessed with a realistic synthetic model representative of the Western Alps. One key issue is the estimation of the temporal source excitation, as there might be some trade-off between the source estimation and the subsurface update. To avoid being trapped in a local minimum, we follow a

  12. Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach

    Khader Shameer

    2010-06-01

    Full Text Available 3-dimensional domain swapping is a mechanism where two or more protein molecules form higher order oligomers by exchanging identical or similar subunits. Recently, this phenomenon has received much attention in the context of prions and neuro-degenerative diseases, due to its role in the functional regulation, formation of higher oligomers, protein misfolding, aggregation etc. While 3-dimensional domain swap mechanism can be detected from three-dimensional structures, it remains a formidable challenge to derive common sequence or structural patterns from proteins involved in swapping. We have developed a SVM-based classifier to predict domain swapping events using a set of features derived from sequence and structural data. The SVM classifier was trained on features derived from 150 proteins reported to be involved in 3D domain swapping and 150 proteins not known to be involved in swapped conformation or related to proteins involved in swapping phenomenon. The testing was performed using 63 proteins from the positive dataset and 63 proteins from the negative dataset. We obtained 76.33% accuracy from training and 73.81% accuracy from testing. Due to high diversity in the sequence, structure and functions of proteins involved in domain swapping, availability of such an algorithm to predict swapping events from sequence and structure-derived features will be an initial step towards identification of more putative proteins that may be involved in swapping or proteins involved in deposition disease. Further, the top features emerging in our feature selection method may be analysed further to understand their roles in the mechanism of domain swapping.

  13. Development of an polarization sensitive Fourier domain optical coherence tomography and it utilization on the Mueller matrix determination

    This study approached theoretical and experimental aspects related with the development of a polarization sensitive, Fourier domain, optical coherence tomography system (PS-FD-OCT) and its utilization on the Mueller Matrix determination. This work began with a bibliographic revision, which describes since the early studies to the actual state of the art of the technique. The mathematical formalism of Fourier domain low coherence interferometry and light polarization was performed as well. Studies based on numerical simulations, of three different algorithm types, responsible to recover the scattering profile, were done. The implemented algorithms were: Direct Fourier Transform, Interpolation and zero-filling. By the end of the simulation study, was possible to conclude that the algorithm zero-filling 2N presented better characteristics when compared with the others. In the experimental part, firstly different OCT setups were assembled and measurements were done in order to verify aspects related with the theory. Then, using a polymeric sample, birefringence images were performed, which allowed determining the sample birefringence quantitatively. Finally, images taken of different polarization states were collected, and through then images related with the Mueller Matrix elements were calculated, which were analyzed individually. (author)

  14. Extending a serial 3D two-phase CFD code to parallel execution over MPI by using the PETSc library for domain decomposition

    Ervik, Åsmund; Müller, Bernhard

    2014-01-01

    To leverage the last two decades' transition in High-Performance Computing (HPC) towards clusters of compute nodes bound together with fast interconnects, a modern scalable CFD code must be able to efficiently distribute work amongst several nodes using the Message Passing Interface (MPI). MPI can enable very large simulations running on very large clusters, but it is necessary that the bulk of the CFD code be written with MPI in mind, an obstacle to parallelizing an existing serial code. In this work we present the results of extending an existing two-phase 3D Navier-Stokes solver, which was completely serial, to a parallel execution model using MPI. The 3D Navier-Stokes equations for two immiscible incompressible fluids are solved by the continuum surface force method, while the location of the interface is determined by the level-set method. We employ the Portable Extensible Toolkit for Scientific Computing (PETSc) for domain decomposition (DD) in a framework where only a fraction of the code needs to be a...

  15. Efficient training of convolutional deep belief networks in the frequency domain for application to high-resolution 2D and 3D images.

    Brosch, Tom; Tam, Roger

    2015-01-01

    Deep learning has traditionally been computationally expensive, and advances in training methods have been the prerequisite for improving its efficiency in order to expand its application to a variety of image classification problems. In this letter, we address the problem of efficient training of convolutional deep belief networks by learning the weights in the frequency domain, which eliminates the time-consuming calculation of convolutions. An essential consideration in the design of the algorithm is to minimize the number of transformations to and from frequency space. We have evaluated the running time improvements using two standard benchmark data sets, showing a speed-up of up to 8 times on 2D images and up to 200 times on 3D volumes. Our training algorithm makes training of convolutional deep belief networks on 3D medical images with a resolution of up to 128×128×128 voxels practical, which opens new directions for using deep learning for medical image analysis. PMID:25380341

  16. Limited cross-reactivity among domains of the Plasmodium falciparum clone 3D7 erythrocyte membrane protein 1 family

    Joergensen, Louise; Turner, Louise; Magistrado, Pamela;

    2006-01-01

    The var gene-encoded Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) family is responsible for antigenic variation and sequestration of infected erythrocytes during malaria. We have previously grouped the 60 PfEMP1 variants of P. falciparum clone 3D7 into groups A and B/A (category A......) and groups B, B/C, and C (category non-A). Expression of category A molecules is associated with severe malaria, and that of category non-A molecules is associated with uncomplicated malaria and asymptomatic infection. Here we assessed cross-reactivity among 60 different recombinant PfEMP1 domains...... sharing cross-reactive antibody epitopes. Identification of groups of serological cross-reacting molecules is pivotal for the development of vaccines based on PfEMP1....

  17. A Polymer Model with Epigenetic Recolouring Reveals a Pathway for the de novo Establishment and 3D Organisation of Chromatin Domains

    Michieletto, Davide; Marenduzzo, Davide

    2016-01-01

    One of the most important problems in development is how epigenetic domains can be first established, and then maintained, within cells. To address this question, we propose a framework which couples 3D chromatin folding dynamics, to a "recolouring" process modelling the writing of epigenetic marks. Because many intra-chromatin interactions are mediated by bridging proteins, we consider a "two-state" model with self-attractive interactions between two epigenetic marks which are alike (either active or inactive). This model displays a first-order-like transition between a swollen, epigenetically disordered, phase, and a compact, epigenetically coherent, chromatin globule. If the self-attraction strength exceeds a threshold, the chromatin dynamics becomes glassy, and the corresponding interaction network freezes. By modifying the epigenetic read-write process according to more biologically-inspired assumptions, our polymer model with recolouring recapitulates the ultrasensitive response of epigenetic switches t...

  18. High-speed polarization sensitive optical coherence tomography scan engine based on Fourier domain mode locked laser

    Bonesi, Marco; Sattmann, Harald; Torzicky, Teresa; Zotter, Stefan; Baumann, Bernhard; Pircher, Michael; Götzinger, Erich; Eigenwillig, Christoph; Wieser, Wolfgang; Huber, Robert; Hitzenberger, Christoph K.

    2012-01-01

    We report on a new swept source polarization sensitive optical coherence tomography scan engine that is based on polarization maintaining (PM) fiber technology. The light source is a Fourier domain mode locked laser with a PM cavity that operates in the 1300 nm wavelength regime. It is equipped with a PM buffer stage that doubles the fundamental sweep frequency of 54.5 kHz. The fiberization allows coupling of the scan engine to different delivery probes. In a first demonstration, we use the s...

  19. In vivo sweat film layer thickness measured with Fourier-domain optical coherence tomography (FD-OCT)

    Jonathan, Enock

    2008-06-01

    While human sweat secretion is accepted as a mechanism by which the body cools off, excessive sweating (hyperhidrosis) is now appreciated as a medical condition and the primary site for diagnosis is the palm of the hand. We propose sweat film layer thickness as a potential clinical diagnostic parameter when screening for excessive sweating. In this preliminary study we demonstrate the usefulness of Fourier-domain optical coherence tomography (FD-OCT) for measurement of sweat film thickness in vivo with micron-scale resolution on the hand of a human volunteer. FD-OCT has a superior image acquisition time and identification of active sweat glands, ducts and pores is also possible.

  20. High-speed polarization-sensitive OCT at 1060 nm using a Fourier domain mode-locked swept source

    Marschall, Sebastian; Torzicky, Teresa; Klein, Thomas;

    2012-01-01

    Optical coherence tomography (OCT) in the 1060nm range is interesting for in vivo imaging of the human posterior eye segment (retina, choroid, sclera), as it permits a long penetration depth. Complementary to structural images, polarization-sensitive OCT (PS-OCT) images visualize birefringent...... sufficiently large datasets. Here, we demonstrate PS-OCT imaging at 350 kHz A-scan rate using a two-channel PS-OCT system in conjunction with a Fourier domain mode-locked laser. The light source spectrum spans up to 100nm around the water absorption minimum at 1060 nm. By modulating the laser pump current, we...

  1. Feasibility and Diagnostic Accuracy of Whole Heart Coronary MR Angiography Using Free-Breathing 3D Balanced Turbo-Field-Echo with SENSE and the Half-Fourier Acquisition Technique

    We wanted to assess the feasibility and diagnostic accuracy of whole heart coronary magnetic resonance angiography (MRA) with using 3D balanced turbo-field-echo (b-TFE) with SENSE and the half-Fourier acquisition technique for identifying stenoses of the coronary artery. Twenty-one patients who underwent both whole heart coronary MRA examinations and conventional catheter coronary angiography examinations were enrolled in the study. The whole heart coronary MRA images were acquired using a navigator gated 3D b-TFE sequence with SENSE and the half-Fourier acquisition technique to reduce the acquisition time. The imaging slab covered the whole heart (80 contiguous slices with a reconstructed slice thickness of 1.5 mm) along the transverse axis. The quality of the images was evaluated by using a 5-point scale (0 - uninterpretable, 1 - poor, 2 - fair, 3 - good, 4 - excellent). Ten coronary segments of the heart were evaluated in each case; the left main coronary artery (LM), and the proximal, middle and distal segments of the left anterior descending (LAD), the left circumflex (LCX) and the right coronary artery (RCA). The diagnostic accuracy of whole heart coronary MRA for detecting significant coronary artery stenosis was determined on the segment-bysegment basis, and it was compared with the results obtained by conventional catheter angiography, which is the gold standard. The mean image quality was 3.7 in the LM, 3.2 in the LAD, 2.5 in the LCX, and 3.3 in the RCA, respectively (the overall image quality was 3.0 ± 0.1). 168 (84%) of the 201 segments had an acceptable image quality (≥ grade 2). The sensitivity, specificity, accuracy, negative predictive value and positive predictive value of the whole heart coronary MRA images for detecting significant stenosis were 81.3%, 92.1%, 91.1%, 97.9%, and 52.0%, respectively. The mean coronary MRA acquisition time was 9 min 22 sec (± 125 sec). Whole heart coronary MRA is a feasible technique, and it has good potential to

  2. Smooth 2-D ocean sound speed from Laplace and Laplace-Fourier domain inversion of seismic oceanography data

    Blacic, Tanya M.; Jun, Hyunggu; Rosado, Hayley; Shin, Changsoo

    2016-02-01

    In seismic oceanography, processed images highlight small temperature changes, but inversion is needed to obtain absolute temperatures. Local search-based full waveform inversion has a lower computational cost than global search but requires accurate starting models. Unfortunately, most marine seismic data have little associated hydrographic data and the band-limited nature of seismic data makes extracting the long wavelength sound speed trend directly from seismic data inherently challenging. Laplace and Laplace-Fourier domain inversion (LDI) can use rudimentary starting models without prior information about the medium. Data are transformed to the Laplace domain, and a smooth sound speed model is extracted by examining the zero and low frequency components of the damped wavefield. We applied LDI to five synthetic data sets based on oceanographic features and recovered smoothed versions of our synthetic models, showing the viability of LDI for creating starting models suitable for more detailed inversions.

  3. A 3D, fully Eulerian, VOF-based solver to study the interaction between two fluids and moving rigid bodies using the fictitious domain method

    Pathak, Ashish; Raessi, Mehdi

    2016-04-01

    We present a three-dimensional (3D) and fully Eulerian approach to capturing the interaction between two fluids and moving rigid structures by using the fictitious domain and volume-of-fluid (VOF) methods. The solid bodies can have arbitrarily complex geometry and can pierce the fluid-fluid interface, forming contact lines. The three-phase interfaces are resolved and reconstructed by using a VOF-based methodology. Then, a consistent scheme is employed for transporting mass and momentum, allowing for simulations of three-phase flows of large density ratios. The Eulerian approach significantly simplifies numerical resolution of the kinematics of rigid bodies of complex geometry and with six degrees of freedom. The fluid-structure interaction (FSI) is computed using the fictitious domain method. The methodology was developed in a message passing interface (MPI) parallel framework accelerated with graphics processing units (GPUs). The computationally intensive solution of the pressure Poisson equation is ported to GPUs, while the remaining calculations are performed on CPUs. The performance and accuracy of the methodology are assessed using an array of test cases, focusing individually on the flow solver and the FSI in surface-piercing configurations. Finally, an application of the proposed methodology in simulations of the ocean wave energy converters is presented.

  4. Efficient fully 3D list-mode TOF PET image reconstruction using a factorized system matrix with an image domain resolution model

    A factorized system matrix utilizing an image domain resolution model is attractive in fully 3D time-of-flight PET image reconstruction using list-mode data. In this paper, we study a factored model based on sparse matrix factorization that is comprised primarily of a simplified geometrical projection matrix and an image blurring matrix. Beside the commonly-used Siddon’s ray-tracer, we propose another more simplified geometrical projector based on the Bresenham’s ray-tracer which further reduces the computational cost. We discuss in general how to obtain an image blurring matrix associated with a geometrical projector, and provide theoretical analysis that can be used to inspect the efficiency in model factorization. In simulation studies, we investigate the performance of the proposed sparse factorization model in terms of spatial resolution, noise properties and computational cost. The quantitative results reveal that the factorization model can be as efficient as a non-factored model, while its computational cost can be much lower. In addition we conduct Monte Carlo simulations to identify the conditions under which the image resolution model can become more efficient in terms of image contrast recovery. We verify our observations using the provided theoretical analysis. The result offers a general guide to achieve the optimal reconstruction performance based on a sparse factorization model with an image domain resolution model. (paper)

  5. Docking and 3D-QSAR (quantitative structure activity relationship) studies of flavones, the potent inhibitors of p-glycoprotein targeting the nucleotide binding domain.

    Kothandan, Gugan; Gadhe, Changdev G; Madhavan, Thirumurthy; Choi, Cheol Hee; Cho, Seung Joo

    2011-09-01

    In order to explore the interactions between flavones and P-gp, in silico methodologies such as docking and 3D-QSAR were performed. CoMFA and CoMSIA analyses were done using ligand based and receptor guided alignment schemes. Validation statistics include leave-one-out cross-validated R(2) (q(2)), internal prediction parameter by progressive scrambling (Q(*2)), external prediction with test set. They show that models derived from this study are quite robust. Ligand based CoMFA (q(2) = 0.747, Q(*2) = 0.639, r(pred)(2)=0.802) and CoMSIA model (q(2) = 0.810, Q(*2) = 0.676, r(pred)(2)=0.785) were developed using atom by atom matching. Receptor guided CoMFA (q(2) = 0.712, Q(*2) = 0.497, r(pred)(2) = 0.841) and for CoMSIA (q(2) = 0.805, Q(*2) = 0.589, r(pred)(2) = 0.937) models were developed by docking of highly active flavone into the proposed NBD (nucleotide binding domain) of P-gp. The 3D-QSAR models generated here predicted that hydrophobic and steric parameters are important for activity toward P-gp. Our studies indicate the important amino acid in NBD crucial for binding in accordance with the previous results. This site forms a hydrophobic site. Since flavonoids have potential without toxicity, we propose to inspect this hydrophobic site including Asn1043 and Asp1049 should be considered for future inhibitor design. PMID:21723648

  6. Assignments and structure determination of the catalytic domain of human fibroblast collagenase using 3D double and triple resonance NMR spectroscopy

    We report here the backbone 1HN, 15N, 13Cα, 13CO, and 1Hα NMR assignments for the catalytic domain of human fibroblast collagenase (HFC). Three independent assignment pathways (matching 1H, 13Cα, and 13CO resonances) were used to establish sequential connections. The connections using 13Cα resonances were obtained from HNCOCA and HNCA experiments; 13CO connections were obtained from HNCO and HNCACO experiments. The sequential proton assignment pathway was established from a 3D(1H/15N) NOESY-HSQC experiment. Amino acid typing was accomplished using 13C and 15N chemical shifts, specific labeling of 15N-Leu, and spin pattern recognition from DQF-COSY. The secondary structure was determined by analyzing the 3D (1H/15N) NOESY-HSQC. A preliminary NMR structure calculation of HFC was found to be in agreement with recent X-ray structures of human fibroblast collagenase and human neutrophil collagenase as well as similar to recent NMR structures of a highly homologous protein, stromelysin. All three helices were located; a five-stranded β-sheet (four parallel strands, one antiparallel strand) was also determined. β-Sheet regions were identified by cross-strand dαN and dNN connections and by strong intraresidue dαN correlations, and were corroborated by observing slow amide proton exchange. Chemical shift changes in a selectively 15N-labeled sample suggest that substantial structural changes occur in the active site cleft on the binding of an inhibitor

  7. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 2: User's manual and program listing

    Bailey, R. T.; Shih, T. I.-P.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D, was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  8. Modular 3-D Transport model

    MT3D was first developed by Chunmiao Zheng in 1990 at S.S. Papadopulos & Associates, Inc. with partial support from the U.S. Environmental Protection Agency (USEPA). Starting in 1990, MT3D was released as a pubic domain code from the USEPA. Commercial versions with enhanced capab...

  9. Fourier-Domain Analysis of Hydriding Kinetics Using Pneumato-Chemical Impedance Spectroscopy

    Millet, P.; C. Decaux; R. Ngameni; Guymont, M.

    2007-01-01

    Analysis of phase transformation processes observed in hydrogen absorbing materials (pure metals, alloys, or compounds) is still a matter of active research. Using pneumato-chemical impedance spectroscopy (PIS), it is now possible to analyze the mechanism of hydriding reactions induced by the gas phase. Experimental impedance diagrams, measured on activated LaNi5 in single- and two-phase domains, are reported in this paper. It is shown that their shape is mostly affected by the slope of the i...

  10. Immersed boundary smooth extension: A high-order method for solving PDE on arbitrary smooth domains using Fourier spectral methods

    Stein, David B.; Guy, Robert D.; Thomases, Becca

    2016-01-01

    The Immersed Boundary method is a simple, efficient, and robust numerical scheme for solving PDE in general domains, yet it only achieves first-order spatial accuracy near embedded boundaries. In this paper, we introduce a new high-order numerical method which we call the Immersed Boundary Smooth Extension (IBSE) method. The IBSE method achieves high-order accuracy by smoothly extending the unknown solution of the PDE from a given smooth domain to a larger computational domain, enabling the use of simple Cartesian-grid discretizations (e.g. Fourier spectral methods). The method preserves much of the flexibility and robustness of the original IB method. In particular, it requires minimal geometric information to describe the boundary and relies only on convolution with regularized delta-functions to communicate information between the computational grid and the boundary. We present a fast algorithm for solving elliptic equations, which forms the basis for simple, high-order implicit-time methods for parabolic PDE and implicit-explicit methods for related nonlinear PDE. We apply the IBSE method to solve the Poisson, heat, Burgers', and Fitzhugh-Nagumo equations, and demonstrate fourth-order pointwise convergence for Dirichlet problems and third-order pointwise convergence for Neumann problems.

  11. A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d

    Clark, E. A.; Crennell, S.; Upadhyay, A.; Zozulya, A. V.; Mackay, J. D.; Svergun, D.I.; Bagby, S; van den Elsen, J. M.

    2011-01-01

    The structure of the complement-binding domain of Staphylococcus aureus protein Sbi (Sbi-IV) in complex with ligand C3d is presented. The 1.7 Å resolution structure reveals the molecular details of the recognition of thioester-containing fragment C3d of the central complement component C3, involving interactions between residues of Sbi-IV helix α2 and the acidic concave surface of C3d. The complex provides a structural basis for the binding preference of Sbi for native C3 over C3b and explain...

  12. Raman-pumped Fourier-domain mode-locked laser: analysis of operation and application for optical coherence tomography.

    Klein, Thomas; Wieser, Wolfgang; Biedermann, Benjamin R; Eigenwillig, Christoph M; Palte, Gesa; Huber, Robert

    2008-12-01

    We demonstrate a Raman-pumped Fourier-domain mode-locked (FDML) fiber laser and optical coherence tomography imaging with this source. The wavelength sweep range of only 30 nm centered around 1550 nm results in limited axial resolution, hence a nonbiological sample is imaged. An output power of 1.9 mW was achieved at a sweep rate of 66 kHz and a maximum ranging depth of ~2.5 cm. Roll-off characteristics are found to be similar to FDML lasers with semiconductor optical amplifiers as gain media. The application of Raman gain also enables unperturbed cavity ring-down experiments in FDML lasers for the first time, providing direct access to the photon lifetime in the laser cavity. Good agreement with nonswept cw operation is proof of the stationary operation of FDML lasers. PMID:19037436

  13. Optical module to extend any Fourier-domain optical coherence tomography system into a polarisation-sensitive system

    Rivet, Sylvain; Marques, Manuel J.; Bradu, Adrian; Podoleanu, Adrian

    2016-06-01

    This article presents a theoretical study on an optical module (OM) that can be inserted between an object under investigation and a Fourier-domain optical coherence tomography system, transforming the latter into a polarisation-sensitive optical coherence tomography optical coherence tomography (OCT) system. The module consists of two electro-optic modulators, a Faraday rotator, a linear polariser and a quarter-wave plate. A detailed description on how the module can be used to extract both the net retardance and the fast axis orientation of a linear birefringent sample is presented. This is achieved by taking two sequential measurements for different values of retardance produced by the electro-optic modulator. The module keeps measurements free from undesired polarimetric effects due to birefringence in the single-mode optical fibre and diattenuation in fibre-based couplers within OCT systems. Simulations have been carried out in order to evaluate the effects of chromatic behaviour of the components within the OM.

  14. The properties of SIRT, TVM, and DART for 3D imaging of tubular domains in nanocomposite thin-films and sections

    In electron tomography, the fidelity of the 3D reconstruction strongly depends on the employed reconstruction algorithm. In this paper, the properties of SIRT, TVM and DART reconstructions are studied with respect to having only a limited number of electrons available for imaging and applying different angular sampling schemes. A well-defined realistic model is generated, which consists of tubular domains within a matrix having slab-geometry. Subsequently, the electron tomography workflow is simulated from calculated tilt-series over experimental effects to reconstruction. In comparison with the model, the fidelity of each reconstruction method is evaluated qualitatively and quantitatively based on global and local edge profiles and resolvable distance between particles. Results show that the performance of all reconstruction methods declines with the total electron dose. Overall, SIRT algorithm is the most stable method and insensitive to changes in angular sampling. TVM algorithm yields significantly sharper edges in the reconstruction, but the edge positions are strongly influenced by the tilt scheme and the tubular objects become thinned. The DART algorithm markedly suppresses the elongation artifacts along the beam direction and moreover segments the reconstruction which can be considered a significant advantage for quantification. Finally, no advantage of TVM and DART to deal better with fewer projections was observed. - Highlights: • Dose and tilt-scheme dependence of SIRT, TVM and DART tomograms are quantified. • SIRT is the most stable method and insensitive to changes in angular sampling. • TVM significantly reduces noise but objects become thinned. • DART markedly suppresses the elongation artifacts. • No advantage of TVM and DART for fewer projections is observed

  15. The properties of SIRT, TVM, and DART for 3D imaging of tubular domains in nanocomposite thin-films and sections

    Chen, Delei [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands); Dutch Polymer Institute (DPI), P.O. Box 902, 5600 AX Eindhoven (Netherlands); Goris, Bart [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Bleichrodt, Folkert [Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); Mezerji, Hamed Heidari; Bals, Sara [EMAT, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Batenburg, Kees Joost [Centrum Wiskunde and Informatica, Science Park 123, NL-1098XG Amsterdam (Netherlands); With, Gijsbertus de [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands); Friedrich, Heiner, E-mail: h.friedrich@tue.nl [Laboratory of Materials and Interface Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Den Dolech 2, 5612 AZ Eindhoven (Netherlands)

    2014-12-15

    In electron tomography, the fidelity of the 3D reconstruction strongly depends on the employed reconstruction algorithm. In this paper, the properties of SIRT, TVM and DART reconstructions are studied with respect to having only a limited number of electrons available for imaging and applying different angular sampling schemes. A well-defined realistic model is generated, which consists of tubular domains within a matrix having slab-geometry. Subsequently, the electron tomography workflow is simulated from calculated tilt-series over experimental effects to reconstruction. In comparison with the model, the fidelity of each reconstruction method is evaluated qualitatively and quantitatively based on global and local edge profiles and resolvable distance between particles. Results show that the performance of all reconstruction methods declines with the total electron dose. Overall, SIRT algorithm is the most stable method and insensitive to changes in angular sampling. TVM algorithm yields significantly sharper edges in the reconstruction, but the edge positions are strongly influenced by the tilt scheme and the tubular objects become thinned. The DART algorithm markedly suppresses the elongation artifacts along the beam direction and moreover segments the reconstruction which can be considered a significant advantage for quantification. Finally, no advantage of TVM and DART to deal better with fewer projections was observed. - Highlights: • Dose and tilt-scheme dependence of SIRT, TVM and DART tomograms are quantified. • SIRT is the most stable method and insensitive to changes in angular sampling. • TVM significantly reduces noise but objects become thinned. • DART markedly suppresses the elongation artifacts. • No advantage of TVM and DART for fewer projections is observed.

  16. High Performance GPU-Based Fourier Volume Rendering

    Marwan Abdellah; Ayman Eldeib; Amr Sharawi

    2015-01-01

    Fourier volume rendering (FVR) is a significant visualization technique that has been used widely in digital radiography. As a result of its (N 2log⁡N) time complexity, it provides a faster alternative to spatial domain volume rendering algorithms that are (N 3) computationally complex. Relying on the Fourier projection-slice theorem, this technique operates on the spectral representation of a 3D volume instead of processing its spatial representation to generate attenuation-only projection...

  17. Interstudy reproducibility of the second generation, Fourier domain optical coherence tomography in patients with coronary artery disease and comparison with intravascular ultrasound: A study applying automated contour detection

    Z. Jamil (Z.); G.J. Tearney (Guillermo); N. Bruining (Nico); K. Sihan (Kenji); G. van Soest (Gijs); J.M.R. Ligthart (Jürgen); R.T. van Domburg (Ron); B.E. Bouma (Brett); E.S. Regar (Eveline)

    2013-01-01

    textabstractRecently, Fourier domain OCT (FD-OCT) has been introduced for clinical use. This approach allows in vivo, high resolution (15 micron) imaging with very fast data acquisition, however, it requires brief flushing of the lumen during imaging. The reproducibility of such fast data acquisitio

  18. On compactness of the velocity field in the incompressible limit of the full Navier-Stokes-Fourier system on large domains

    Feireisl, Eduard; Poul, Lukáš

    2009-01-01

    Roč. 32, č. 10 (2009), s. 1269-1286. ISSN 0170-4214 R&D Projects: GA AV ČR(CZ) IAA100190606 Institutional research plan: CEZ:AV0Z10190503 Keywords : low Mach number limit * Navier - Stokes -Fourier system * large domain Subject RIV: BA - General Mathematics Impact factor: 0.808, year: 2009

  19. Ultra-high-speed optical serial-to-parallel data conversion by time-domain optical Fourier transformation in a silicon nanowire

    Mulvad, Hans Christian Hansen; Palushani, Evarist; Hu, Hao;

    2011-01-01

    We demonstrate conversion from 64 × 10 Gbit/s optical timedivision multiplexed (OTDM) data to dense wavelength division multiplexed (DWDM) data with 25 GHz spacing. The conversion is achieved by time-domain optical Fourier transformation (OFT) based on four-wave mixing (FWM) in a 3.6 mm long sili...

  20. Quantifying height of ultraprecisely machined steps on oxygen-free electronic copper disc using Fourier-domain short coherence interferometry

    Montonen, Risto; Kassamakov, Ivan; Hæggström, Edward; Österberg, Kenneth

    2016-01-01

    The internal shape and alignment of accelerator discs is crucial for efficient collider operation at the future compact linear collider (CLIC). We applied a calibrated custom-made Fourier-domain short coherence interferometer to measure the height of 40 and 60 μm ultraprecisely turned steps (surface roughness Ra≤25 nm, flatness ≤2 μm) on an oxygen-free electronic copper disc. The step heights were quantified to be (39.6±2.6) μm and (59.0±2.3) μm. The uncertainties are quoted at 95% confidence level and include contributions from calibration, refractive index of air, cosine error, surface roughness, and thermal expansion in comparison to standard temperature of 20°C. The results were verified by measuring the same steps using a commercial white light interferometer Veeco-NT3300. Our instrument can ensure that the accelerator discs of the CLIC are aligned within the tolerance required for efficient collider operation.

  1. Common approach for compensation of axial motion artifacts in swept-source OCT and dispersion in Fourier-domain OCT.

    Hillmann, Dierck; Bonin, Tim; Lührs, Christian; Franke, Gesa; Hagen-Eggert, Martin; Koch, Peter; Hüttmann, Gereon

    2012-03-12

    Swept-source optical coherence tomography (SS-OCT) is sensitive to sample motion during the wavelength sweep, which leads to image blurring and image artifacts. In line-field and full-field SS-OCT parallelization is achieved by using a line or area detector, respectively. Thus, approximately 1000 lines or images at different wavenumbers are acquired. The sweep duration is identically with the acquisition time of a complete B-scan or volume, rendering parallel SS-OCT more sensitive to motion artifacts than scanning OCT. The effect of axial motion on the measured spectra is similar to the effect of non-balanced group velocity dispersion (GVD) in the interferometer arms. It causes the apparent optical path lengths in the sample arm to vary with the wavenumber. Here we propose the cross-correlation of sub-bandwidth reconstructions (CCSBR) as a new algorithm that is capable of detecting and correcting the artifacts induced by axial motion in line-field or full-field SS-OCT as well as GVD mismatch in any Fourier-domain OCT (FD-OCT) setup. By cross-correlating images which were reconstructed from a limited spectral range of the interference signal, a phase error is determined which is used to correct the spectral modulation prior to the calculation of the A-scans. Performance of the algorithm is demonstrated on in vivo full-field SS-OCT images of skin and scanning FD-OCT of skin and retina. PMID:22418560

  2. Fourier-Domain Optical Coherence Tomography for Monitoring the Lower Tear Meniscus in Dry Eye after Acupuncture Treatment

    Tong Lin

    2015-01-01

    Full Text Available Dry eye is highly prevalent and has a significant impact on quality of life. Acupuncture was found to be effective to treat dry eye. However, little was known about the effect of acupuncture on different subtypes of dry eye. The objective of this study was to investigate the applicability of tear meniscus assessment by Fourier-domain optical coherence tomography in the evaluation of acupuncture treatment response in dry eye patients and to explore the effect of acupuncture on different subtypes of dry eye compared with artificial tear treatment. A total of 108 dry eye patients were randomized into acupuncture or artificial tear group. Each group was divided into three subgroups including lipid tear deficiency (LTD, Sjögren syndrome dry eye (SSDE, and non-Sjögren syndrome dry eye (Non-SSDE for data analysis. After 4-week treatment, the low tear meniscus parameters including tear meniscus height (TMH, tear meniscus depth (TMD, and tear meniscus area (TMA in the acupuncture group increased significantly for the LTD and Non-SSDE subgroups compared with both the baseline and the control groups (all P values < 0.05, but not for the SSDE. Acupuncture provided a measurable improvement of the tear meniscus dimensions for the Non-SSDE and LTD patients, but not for the SSDE patients.

  3. Assessment of Corneal Epithelial Thickness in Asymmetric Keratoconic Eyes and Normal Eyes Using Fourier Domain Optical Coherence Tomography

    S. Catalan

    2016-01-01

    Full Text Available Purpose. To compare the characteristics of asymmetric keratoconic eyes and normal eyes by Fourier domain optical coherence tomography (OCT corneal mapping. Methods. Retrospective corneal and epithelial thickness OCT data for 74 patients were compared in three groups of eyes: keratoconic (n=22 and normal fellow eyes (n=22 in patients with asymmetric keratoconus and normal eyes (n=104 in healthy subjects. Areas under the curve (AUC of receiver operator characteristic (ROC curves for each variable were compared across groups to indicate their discrimination capacity. Results. Three variables were found to differ significantly between fellow eyes and normal eyes (all p<0.05: minimum corneal thickness, thinnest corneal point, and central corneal thickness. These variables combined showed a high discrimination power to differentiate fellow eyes from normal eyes indicated by an AUC of 0.840 (95% CI: 0.762–0.918. Conclusions. Our findings indicate that topographically normal fellow eyes in patients with very asymmetric keratoconus differ from the eyes of healthy individuals in terms of their corneal epithelial and pachymetry maps. This type of information could be useful for an early diagnosis of keratoconus in topographically normal eyes.

  4. 3D video

    Lucas, Laurent; Loscos, Céline

    2013-01-01

    While 3D vision has existed for many years, the use of 3D cameras and video-based modeling by the film industry has induced an explosion of interest for 3D acquisition technology, 3D content and 3D displays. As such, 3D video has become one of the new technology trends of this century.The chapters in this book cover a large spectrum of areas connected to 3D video, which are presented both theoretically and technologically, while taking into account both physiological and perceptual aspects. Stepping away from traditional 3D vision, the authors, all currently involved in these areas, provide th

  5. 3D Animation Essentials

    Beane, Andy

    2012-01-01

    The essential fundamentals of 3D animation for aspiring 3D artists 3D is everywhere--video games, movie and television special effects, mobile devices, etc. Many aspiring artists and animators have grown up with 3D and computers, and naturally gravitate to this field as their area of interest. Bringing a blend of studio and classroom experience to offer you thorough coverage of the 3D animation industry, this must-have book shows you what it takes to create compelling and realistic 3D imagery. Serves as the first step to understanding the language of 3D and computer graphics (CG)Covers 3D anim

  6. Functional imaging of hemodynamic stimulus response in the rat retina with ultrahigh-speed spectral / Fourier domain OCT

    Choi, WooJhon; Baumann, Bernhard; Clermont, Allen C.; Feener, Edward P.; Boas, David A.; Fujimoto, James G.

    2013-03-01

    Measuring retinal hemodynamics in response to flicker stimulus is important for investigating pathophysiology in small animal models of diabetic retinopathy, because a reduction in the hyperemic response is thought to be one of the earliest changes in diabetic retinopathy. In this study, we investigated functional imaging of retinal hemodynamics in response to flicker stimulus in the rat retina using an ultrahigh speed spectral / Fourier domain OCT system at 840nm with an axial scan rate of 244kHz. At 244kHz the nominal axial velocity range that could be measured without phase wrapping was +/-37.7mm/s. Pulsatile total retinal arterial blood flow as a function of time was measured using an en face Doppler approach where a 200μm × 200μm area centered at the central retinal artery was repeatedly raster scanned at a volume acquisition rate of 55Hz. Three-dimensional capillary imaging was performed using speckle decorrelation which has minimal angle dependency compared to other angiography techniques based on OCT phase information. During OCT imaging, a flicker stimulus could be applied to the retina synchronously by inserting a dichroic mirror in the imaging interface. An acute transient increase in total retinal blood flow could be detected. At the capillary level, an increase in the degree of speckle decorrelation in capillary OCT angiography images could also be observed, which indicates an increase in the velocity of blood at the capillary level. This method promises to be useful for the investigation of small animal models of ocular diseases.

  7. Imaging retinal degeneration in mice by combining Fourier domain optical coherence tomography and fluorescent scanning laser ophthalmoscopy

    Hossein-Javaheri, Nima; Molday, Laurie L.; Xu, Jing; Molday, Robert S.; Sarunic, Marinko V.

    2009-02-01

    Visualization of the internal structures of the retina is critical for clinical diagnosis and monitoring of pathology as well as for medical research investigating the root causes of retinal degeneration. Optical Coherence Tomography (OCT) is emerging as the preferred technique for non-contact sub-surface depth-resolved imaging of the retina. The high resolution cross sectional images acquired in vivo by OCT can be compared to histology to visually delineate the retinal layers. The recent demonstration of the significant sensitivity increase obtained through use of Fourier domain (FD) detection with OCT has been used to facilitate high speed scanning for volumetric reconstruction of the retina in software. The images acquired by OCT are purely structural, relying on refractive index differences in the tissue for contrast, and do not provide information on the molecular content of the sample. We have constructed a FDOCT prototype and combined it with a fluorescent Scanning Laser Ophthalmoscope (fSLO) to permit real time alignment of the field of view on the retina. The alignment of the FDOCT system to the specimen is crucial for the registration of measurements taken throughout longitudinal studies. In addition, fluorescence detection has been integrated with the SLO to enable the en face localization of a molecular contrast signal, which is important for retinal angiography, and also for detection of autofluorescence associated with some forms of retinal degeneration, for example autofluorescence lipofuscin accumulations are associated with Stargardt's Macular Dystrophy. The integrated FD OCT/fSLO system was investigated for imaging the retina of the mice in vivo.

  8. Guiding glaucoma laser surgery using Fourier-domain optical coherence tomography at 1.3 μm

    Bayleyegn, Masreshaw D.; Makhlouf, Houssine; Crotti, Caroline; Plamann, Karsten; Dubois, Arnaud

    2012-06-01

    Glaucoma is a disease of the optic nerve that is usually associated with an increased internal pressure of the eye and can lead to a decreased vision and eventually blindness. It is the second leading cause of blindness worldwide with more than 80 million people affected and approximately 6 million blind. The standard clinical treatment for glaucoma, after unsuccessful administration of eyedrops and other treatments, is performing incisional surgery. However, due to post-surgical complications like scarring and wound healing, this conventional method has a global success rate of only about 60%. In comparison, as femtosecond laser surgery may be performed in volume and is a priori less invasive and less susceptible of causing scarring, glaucoma laser surgery could be a novel technique to supplement the conventional glaucoma surgery. We have been working on the development of a new tool for glaucoma treatment that uses an optimized femtosecond laser source centered at 1.65 μm wavelength for making the surgery and an imaging system based on optical coherence tomography (OCT) for guiding the laser surgery. In this proceeding, we present the results obtained so far on the development and utilization of Fourier-domain OCT imaging system working at 1.3 μm center wavelength for guiding the laser incision. Cross-sectional OCT image of pathological human cornea showing the Schlemm's canal, where the surgery is intended to be done, is presented. By coupling OCT imaging system with the laser incision system, we also demonstrate real-time imaging of femtosecond laser incision of cornea.

  9. Measurement of the total retinal blood flow using dual beam Fourier-domain Doppler optical coherence tomography with orthogonal detection planes

    Doblhoff-Dier, Veronika; Schmetterer, Leopold; Vilser, Walthard; Garhöfer, Gerhard; Gröschl, Martin; Rainer A. Leitgeb; René M. Werkmeister

    2014-01-01

    We present a system capable of measuring the total retinal blood flow using a combination of dual beam Fourier-domain Doppler optical coherence tomography with orthogonal detection planes and a fundus camera-based retinal vessel analyzer. Our results show a high degree of conformity of venous and arterial flows, which corroborates the validity of the measurements. In accordance with Murray’s law, the log-log regression coefficient between vessel diameter and blood flow was found to be ~3. The...

  10. Response of Retinal Blood Flow to Systemic Hyperoxia as Measured with Dual-Beam Bidirectional Doppler Fourier-Domain Optical Coherence Tomography

    Werkmeister, René M.; Palkovits, Stefan; Told, Reinhard; Gröschl, Martin; Leitgeb, Rainer A.; Garhöfer, Gerhard; Schmetterer, Leopold

    2012-01-01

    Purpose There is a long-standing interest in the study of retinal blood flow in humans. In the recent years techniques have been established to measure retinal perfusion based on optical coherence tomography (OCT). In the present study we used a technique called dual-beam bidirectional Doppler Fourier-domain optical coherence tomography (FD-OCT) to characterize the effects of 100% oxygen breathing on retinal blood flow. These data were compared to data obtained with a laser Doppler velocimete...

  11. Fourier-domain optical coherence tomography of eyes with idiopathic epiretinal membrane: correlation between macular morphology and visual function

    Pilli, S; Lim, P; Zawadzki, R J; Choi, S S; Werner, J S; Park, S S

    2011-01-01

    Purpose The purpose of this study is to evaluate the macular morphological changes associated with idiopathic epiretinal membrane (iERM) using high-resolution Fourier-domain optical coherence tomography (FD-OCT), as they correlate with visual acuity and microperimetry (MP-1). Methods In all, 24 eyes (19 subjects) with iERM were imaged prospectively using FD-OCT with axial resolution of 4.5 μm and transverse resolution of 10 to 15 μm. MP-1 and Stratus OCT were carried out in a subset of eyes. Results The mean log of the minimum angle of resolution best-corrected visual acuity (BCVA) was 0.18±0.16 (range: −0.08 to 0.48, Snellen equivalent 20/15−1 to 20/60). ERM was visualized in all 24 eyes with FD-OCT and in 17 eyes (85%) of 20 eyes imaged with Stratus OCT. Although BCVA correlated with macular thickening in the central 1 mm sub-field of the Stratus ETDRS (P=0.0005) and macular volume (central 3 mm area) on FD-OCT (P<0.0001), macular thickening on thickness map and volume correlated poorly with decrease in macular sensitivity on MP-1 (P=0.16). On FD-OCT, foveal morphological changes correlated best with decrease in BCVA, the strongest being central foveal thickness (P<0.0001). Other significant changes included blurring of the foveal inner segment–outer segment (IS–OS) junction and/or Verhoeff's membrane, vitreal displacement of foveal outer nuclear layer and foveal detachment (P<0.05). Foveal IS–OS junction disruption was seen in 25% of eyes on Stratus OCT but in none of the eyes on FD-OCT. Conclusion FD-OCT allowed improved visualization of ERM and associated foveal morphological changes that correlated best with BCVA. Macular thickening correlated weakly with decreased macular function as assessed by MP-1. PMID:21436847

  12. Solid works 3D

    This book explains modeling of solid works 3D and application of 3D CAD/CAM. The contents of this book are outline of modeling such as CAD and 2D and 3D, solid works composition, method of sketch, writing measurement fixing, selecting projection, choosing condition of restriction, practice of sketch, making parts, reforming parts, modeling 3D, revising 3D modeling, using pattern function, modeling necessaries, assembling, floor plan, 3D modeling method, practice floor plans for industrial engineer data aided manufacturing, processing of CAD/CAM interface.

  13. Limited Feedback for 3D Massive MIMO under 3D-UMa and 3D-UMi Scenarios

    Zheng Hu

    2015-01-01

    Full Text Available For three-dimensional (3D massive MIMO utilizing the uniform rectangular array (URA in the base station (BS, we propose a limited feedback transmission scheme in which the channel state information (CSI feedback operations for horizontal domain and vertical domain are separate. Compared to the traditional feedback scheme, the scheme can reduce the feedback overhead, code word index search complexity, and storage requirement. Also, based on the zenith of departure angle (ZoD distribution in 3D-Urban Macro Cell (3D-UMa and 3D-Urban Micro Cell (3D-UMi scenarios, we propose the angle quantization codebook for vertical domain, while the codebook of long term evolution-advanced (LTE-Advanced is still adopted in horizontal domain to preserve compatibility with the LTE-Advanced. Based on the angle quantization codebook, the subsampled 3-bit DFT codebook is designed for vertical domain. The system-level simulation results reveal that, to compromise the feedback overhead and system performance, 2-bit codebook for 3D-UMa scenario and 3-bit codebook for 3D-UMi scenario can meet requirements in vertical domain. The feedback period for vertical domain can also be extended appropriately to reduce the feedback overhead.

  14. Open 3D Projects

    Felician ALECU

    2010-01-01

    Full Text Available Many professionals and 3D artists consider Blender as being the best open source solution for 3D computer graphics. The main features are related to modeling, rendering, shading, imaging, compositing, animation, physics and particles and realtime 3D/game creation.

  15. Comment on '3-D frequency-domain seismic wave modelling in heterogeneous, anisotropic media using a Gaussian quadrature grid approach' by Bing Zhou and S. A. Greenhalgh

    de Basabe, Jonás D.

    2011-08-01

    Zhou & Greenhalgh have recently presented an application of the Gaussian quadrature grid to seismic modelling in which the authors propose a meshing scheme that partitions the domain independently of the discontinuities in the media parameters. This comment aims to clarify the implications that this strategy has on the accuracy.

  16. 3d-3d correspondence revisited

    Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-01

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  17. IZDELAVA TISKALNIKA 3D

    Brdnik, Lovro

    2015-01-01

    Diplomsko delo analizira trenutno stanje 3D tiskalnikov na trgu. Prikazan je razvoj in principi delovanja 3D tiskalnikov. Predstavljeni so tipi 3D tiskalnikov, njihove prednosti in slabosti. Podrobneje je predstavljena zgradba in delovanje koračnih motorjev. Opravljene so meritve koračnih motorjev. Opisana je programska oprema za rokovanje s 3D tiskalniki in komponente, ki jih potrebujemo za izdelavo. Diploma se oklepa vprašanja, ali je izdelava 3D tiskalnika bolj ekonomična kot pa naložba v ...

  18. 3D Cameras: 3D Computer Vision of Wide Scope

    May, Stefan; Pervoelz, Kai; Surmann, Hartmut

    2007-01-01

    First of all, a short comparison of range sensors and their underlying principles was given. The chapter further focused on 3D cameras. The latest innovations have given a significant improvement for the measurement accuracy, wherefore this technology has attracted attention in the robotics community. This was also the motivation for the examination in this chapter. On this account, several applications were presented, which represents common problems in the domain of autonomous robotics. For...

  19. 3D and Education

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  20. Dissecting the influence of Mg2+ on 3D architecture and ligand-binding of the guanine-sensing riboswitch aptamer domain

    Buck, Janina; Noeske, Jonas; Wöhnert, Jens; Schwalbe, Harald

    2010-01-01

    Long-range tertiary interactions determine the three-dimensional structure of a number of metabolite-binding riboswitch RNA elements and were found to be important for their regulatory function. For the guanine-sensing riboswitch of the Bacillus subtilis xpt-pbuX operon, our previous NMR-spectroscopic studies indicated pre-formation of long-range tertiary contacts in the ligand-free state of its aptamer domain. Loss of the structural pre-organization in a mutant of this RNA (G37A/C61U) result...

  1. On the calculation of scattered fields by 3-D structure in the time-domain electromagnetic (TDEM) method; Jikan ryoiki denjiho ni okeru sanjigen kozo kara no sanranba no keisan ni tsuite

    Murakami, Y. [Geological Survey of Japan, Tsukuba (Japan); Saito, A.; Oya, T. [Mitsui Mineral Development Engineering Co. Ltd., Tokyo (Japan)

    1996-10-01

    This paper describes the calculation method of 3-D underground structures in TDME method which measures only field components. Recently, FDTD method was developed as calculation method in time domain difference calculus, and the forward analysis accuracy of 3-D fields was rapidly improved. The survey results using a large-scale loop (600m{times}360m) were numerically analyzed by FDTD method. 16 measuring lines were prepared in both X and Y directions, and measuring points were prepared on intersection points of the measuring lines. Since signal current is staircase one, step and impulse responses of the ground were determined by calculating magnetic field and its time differentiation. The rectangular body (120m{times}120m{times}100m) of 0.2S/m in conductivity (5 ohm m in resistivity) was installed 160m under the ground as 3-D resistivity anomaly. The ground of 0.01S/m (100 ohm m) was assumed. Time variation in horizontal magnetic field vector plot of impulse responses of the uniform ground could be observed. The position of the resistivity anomaly could be also determined from spacial differentiation of magnetic field of grid pattern measuring points. 1 ref., 6 figs.

  2. Compression of 3D models with NURBS

    Santa Cruz Ducci, Diego; Ebrahimi, Touradj

    2005-01-01

    With recent progress in computing, algorithmics and telecommunications, 3D models are increasingly used in various multimedia applications. Examples include visualization, gaming, entertainment and virtual reality. In the multimedia domain 3D models have been traditionally represented as polygonal meshes. This piecewise planar representation can be thought of as the analogy of bitmap images for 3D surfaces. As bitmap images, they enjoy great flexibility and are particularly well suited to des...

  3. Transit Timing Observations from Kepler: III. Confirmation of 4 Multiple Planet Systems by a Fourier-Domain Study of Anti-correlated Transit Timing Variations

    Steffen, Jason H; Ford, Eric B; Carter, Joshua A; Desert, Jean-Michel; Fressin, Francois; Holman, Matthew J; Lissauer, Jack J; Moorhead, Althea V; Rowe, Jason F; Ragozzine, Darin; Welsh, William F; Batalha, Natalie M; Borucki, William J; Buchhave, Lars A; Bryson, Steve; Caldwell, Douglas A; Charbonneau, David; Ciardi, David R; Cochran, William D; Endl, Michael; Everett, Mark E; Gautier, Thomas N; Gilliland, Ron L; Girouard, Forrest R; Jenkins, Jon M; Horch, Elliott; Howell, Steve B; Isaacson, Howard; Klaus, Todd C; Koch, David G; Latham, David W; Li, Jie; Lucas, Philip; MacQueen, Phillip J; Marcy, Geoffrey W; McCauliff, Sean; Middour, Christopher K; Morris, Robert L; Mullally, Fergal R; Quinn, Samuel N; Quintana, Elisa V; Shporer, Avi; Still, Martin; Tenenbaum, Peter; Thompson, Susan E; Twicken, Joseph D; Van Cleve, Jeffery

    2012-01-01

    We present a method to confirm the planetary nature of objects in systems with multiple transiting exoplanet candidates. This method involves a Fourier-Domain analysis of the deviations in the transit times from a constant period that result from dynamical interactions within the system. The combination of observed anti-correlations in the transit times and mass constraints from dynamical stability allow us to claim the discovery of four planetary systems Kepler-25, Kepler-26, Kepler-27, and Kepler-28, containing eight planets and one additional planet candidate.

  4. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage

  5. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Jacques, Steven; Wang, Ruikang; Nuttall, Alfred L.

    2015-12-01

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  6. Transit Timing Observations from Kepler: III. Confirmation of 4 Multiple Planet Systems by a Fourier-Domain Study of Anti-correlated Transit Timing Variations

    Steffen, Jason H.; /Fermilab; Fabrycky, Daniel C.; /Lick Observ.; Ford, Eric B.; /Florida U.; Carter, Joshua A.; /Harvard-Smithsonian Ctr. Astrophys.; Fressin, Francois; /Harvard-Smithsonian Ctr. Astrophys.; Holman, Matthew J.; /Harvard-Smithsonian Ctr. Astrophys.; Lissauer, Jack J.; /NASA, Ames; Rowe, Jason F.; /SETI Inst., Mtn. View /NASA, Ames; Ragozzine, Darin; /Harvard-Smithsonian Ctr. Astrophys.; Welsh, William F.; /Caltech; Borucki, William J.; /NASA, Ames /UC, Santa Barbara

    2012-01-01

    We present a method to confirm the planetary nature of objects in systems with multiple transiting exoplanet candidates. This method involves a Fourier-domain analysis of the deviations in the transit times from a constant period that result from dynamical interactions within the system. The combination of observed anticorrelations in the transit times and mass constraints from dynamical stability allow us to claim the discovery of four planetary systems, Kepler-25, Kepler-26, Kepler-27 and Kepler-28, containing eight planets and one additional planet candidate.

  7. Retinal morphology in patients with BBS1 and BBS10 related Bardet–Biedl Syndrome evaluated by Fourier-domain optical coherence tomography

    Gerth, C.; Zawadzki, RJ; Werner, JS; Heon, E

    2007-01-01

    Retinal dystrophy in Bardet–Biedl Syndrome (BBS) is caused by defective genes that are expressed within ciliated cells such as photoreceptors. The purpose of this study was to characterize and compare the retinal structure and lamination of two groups of patients, carrying mutations in BBS1 or BBS10. Eight patients with BBS (ages 11.9–28.5 years) and mutations in BBS1 (4/8) or BBS10 (4/8) were tested. A high-resolution hand-held probe Fourier-domain optical coherence tomography system (Fd-OCT...

  8. Fast numerical autofocus of multispectral complex fields in digital holographic microscopy with a criterion based on the phase in the Fourier domain.

    Dohet-Eraly, Jérôme; Yourassowsky, Catherine; Dubois, Frank

    2016-09-01

    The knowledge of the complex amplitude of optical fields, that is, both quantitative phase and intensity, enables numeric reconstruction along the optical axis. Nonetheless, a criterion is required for autofocusing. This Letter presents a robust and rapid refocusing criterion suitable for color interferometric digital holographic microscopy, and, more generally, for applications where complex amplitude is known for at least two different wavelengths. This criterion uses the phase in the Fourier domain, which is compared among wavelengths. It is applicable whatever the nature of the observed object: opaque, refractive, or both mixed. The method is validated with simulated and experimental holograms. PMID:27607975

  9. Ultra-high-speed optical serial-to-parallel data conversion by time-domain optical Fourier transformation in a silicon nanowire

    Mulvad, Hans Christian Hansen; Palushani, Evarist; Hu, Hao; Ji, Hua; Lillieholm, Mads; Galili, Michael; Clausen, Anders; Pu, Minhao; Yvind, Kresten; Hvam, Jørn Märcher; Jeppesen, Palle; Oxenløwe, Leif Katsuo

    2011-01-01

    We demonstrate conversion from 64 × 10 Gbit/s optical timedivision multiplexed (OTDM) data to dense wavelength division multiplexed (DWDM) data with 25 GHz spacing. The conversion is achieved by time-domain optical Fourier transformation (OFT) based on four-wave mixing (FWM) in a 3.6 mm long silicon nanowire. A total of 40 out of 64 tributaries of a 64 × 10 Gbit/s OTDM-DPSK data signal are simultaneously converted with a bit-error rate (BER) performance below the 2 × 10−3 FEC limit. Using a 5...

  10. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    Ramamoorthy, Sripriya [Oregon Hearing Research Center, Oregon Health & Science University, Portland, Oregon (United States); Zhang, Yuan; Jacques, Steven [Department of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon (United States); Petrie, Tracy; Wang, Ruikang [Department of Bioengineering, University of Washington, Seattle, Washington (United States); Nuttall, Alfred L. [Oregon Hearing Research Center, Oregon Health & Science University, Portland, Oregon (United States); Kresge Hearing Research Institute, The University of Michigan, Ann Arbor, Michigan (United States)

    2015-12-31

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  11. 3D virtuel udstilling

    Tournay, Bruno; Rüdiger, Bjarne

    2006-01-01

    3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s.......3d digital model af Arkitektskolens gård med virtuel udstilling af afgangsprojekter fra afgangen sommer 2006. 10 s....

  12. A parallel domain decomposition-based implicit method for the Cahn–Hilliard–Cook phase-field equation in 3D

    We present a numerical algorithm for simulating the spinodal decomposition described by the three dimensional Cahn–Hilliard–Cook (CHC) equation, which is a fourth-order stochastic partial differential equation with a noise term. The equation is discretized in space and time based on a fully implicit, cell-centered finite difference scheme, with an adaptive time-stepping strategy designed to accelerate the progress to equilibrium. At each time step, a parallel Newton–Krylov–Schwarz algorithm is used to solve the nonlinear system. We discuss various numerical and computational challenges associated with the method. The numerical scheme is validated by a comparison with an explicit scheme of high accuracy (and unreasonably high cost). We present steady state solutions of the CHC equation in two and three dimensions. The effect of the thermal fluctuation on the spinodal decomposition process is studied. We show that the existence of the thermal fluctuation accelerates the spinodal decomposition process and that the final steady morphology is sensitive to the stochastic noise. We also show the evolution of the energies and statistical moments. In terms of the parallel performance, it is found that the implicit domain decomposition approach scales well on supercomputers with a large number of processors

  13. Tumor-penetrating peptide fused EGFR single-domain antibody enhances cancer drug penetration into 3D multicellular spheroids and facilitates effective gastric cancer therapy

    Sha, Huizi; Zou, Zhengyun; Xin, Kai; Bian, Xinyu; Cai, Xueting; Lu, Wuguang; Chen, Jiao; Chen, Gang; Huang, Leaf; Blair, Andrew M.; Cao, Peng; Liu, Baorui

    2016-01-01

    Human tumors, including gastric cancer, frequently express high levels of epidermal growth factor receptors (EGFRs), which are associated with a poor prognosis. Targeted delivery of anticancer drugs to cancerous tissues shows potential in sparing unaffected tissues. However, it has been a major challenge for drug penetration in solid tumor tissues due to the complicated tumor microenvironment. We have constructed a recombinant protein named anti-EGFR-iRGD consisting of an anti-EGFR VHH (the variable domain from the heavy chain of the antibody) fused to iRGD, a tumor-specific binding peptide with high permeability. Anti-EGFR-iRGD, which targets EGFR and αvβ3, spreads extensively throughout both the multicellular spheroids and the tumor mass. The recombinant protein anti-EGFR-iRGD also exhibited antitumor activity in tumor cell lines, multicellular spheroids, and mice. Moreover, anti-EGFR-iRGD could improve anticancer drugs, such as doxorubicin (DOX), bevacizumab, nanoparticle permeability and efficacy in multicellular spheroids. This study draws attention to the importance of iRGD peptide in the therapeutic approach of anti-EGFR-iRGD. As a consequence, anti-EGFR-iRGD could be a drug candidate for cancer treatment and a useful adjunct of other anticancer drugs. PMID:25553823

  14. A parallel domain decomposition-based implicit method for the Cahn-Hilliard-Cook phase-field equation in 3D

    Zheng, Xiang

    2015-03-01

    We present a numerical algorithm for simulating the spinodal decomposition described by the three dimensional Cahn-Hilliard-Cook (CHC) equation, which is a fourth-order stochastic partial differential equation with a noise term. The equation is discretized in space and time based on a fully implicit, cell-centered finite difference scheme, with an adaptive time-stepping strategy designed to accelerate the progress to equilibrium. At each time step, a parallel Newton-Krylov-Schwarz algorithm is used to solve the nonlinear system. We discuss various numerical and computational challenges associated with the method. The numerical scheme is validated by a comparison with an explicit scheme of high accuracy (and unreasonably high cost). We present steady state solutions of the CHC equation in two and three dimensions. The effect of the thermal fluctuation on the spinodal decomposition process is studied. We show that the existence of the thermal fluctuation accelerates the spinodal decomposition process and that the final steady morphology is sensitive to the stochastic noise. We also show the evolution of the energies and statistical moments. In terms of the parallel performance, it is found that the implicit domain decomposition approach scales well on supercomputers with a large number of processors. © 2015 Elsevier Inc.

  15. Higher-order in time "quasi-unconditionally stable" ADI solvers for the compressible Navier-Stokes equations in 2D and 3D curvilinear domains

    Bruno, Oscar

    2015-01-01

    This paper introduces alternating-direction implicit (ADI) solvers of higher order of time-accuracy (orders two to six) for the compressible Navier-Stokes equations in two- and three-dimensional curvilinear domains. The higher-order accuracy in time results from 1) An application of the backward differentiation formulae time-stepping algorithm (BDF) in conjunction with 2) A BDF-like extrapolation technique for certain components of the nonlinear terms (which makes use of nonlinear solves unnecessary), as well as 3) A novel application of the Douglas-Gunn splitting (which greatly facilitates handling of boundary conditions while preserving higher-order accuracy in time). As suggested by our theoretical analysis of the algorithms for a variety of special cases, an extensive set of numerical experiments clearly indicate that all of the BDF-based ADI algorithms proposed in this paper are "quasi-unconditionally stable" in the following sense: each algorithm is stable for all couples $(h,\\Delta t)$ of spatial and t...

  16. Underwater 3D filming

    Roberto Rinaldi

    2014-12-01

    Full Text Available After an experimental phase of many years, 3D filming is now effective and successful. Improvements are still possible, but the film industry achieved memorable success on 3D movie’s box offices due to the overall quality of its products. Special environments such as space (“Gravity” and the underwater realm look perfect to be reproduced in 3D. “Filming in space” was possible in “Gravity” using special effects and computer graphic. The underwater realm is still difficult to be handled. Underwater filming in 3D was not that easy and effective as filming in 2D, since not long ago. After almost 3 years of research, a French, Austrian and Italian team realized a perfect tool to film underwater, in 3D, without any constrains. This allows filmmakers to bring the audience deep inside an environment where they most probably will never have the chance to be.

  17. A Numerical Method for Solving the 3D Unsteady Incompressible Navier-Stokes Equations in Curvilinear Domains with Complex Immersed Boundaries.

    Ge, Liang; Sotiropoulos, Fotis

    2007-08-01

    A novel numerical method is developed that integrates boundary-conforming grids with a sharp interface, immersed boundary methodology. The method is intended for simulating internal flows containing complex, moving immersed boundaries such as those encountered in several cardiovascular applications. The background domain (e.g the empty aorta) is discretized efficiently with a curvilinear boundary-fitted mesh while the complex moving immersed boundary (say a prosthetic heart valve) is treated with the sharp-interface, hybrid Cartesian/immersed-boundary approach of Gilmanov and Sotiropoulos [1]. To facilitate the implementation of this novel modeling paradigm in complex flow simulations, an accurate and efficient numerical method is developed for solving the unsteady, incompressible Navier-Stokes equations in generalized curvilinear coordinates. The method employs a novel, fully-curvilinear staggered grid discretization approach, which does not require either the explicit evaluation of the Christoffel symbols or the discretization of all three momentum equations at cell interfaces as done in previous formulations. The equations are integrated in time using an efficient, second-order accurate fractional step methodology coupled with a Jacobian-free, Newton-Krylov solver for the momentum equations and a GMRES solver enhanced with multigrid as preconditioner for the Poisson equation. Several numerical experiments are carried out on fine computational meshes to demonstrate the accuracy and efficiency of the proposed method for standard benchmark problems as well as for unsteady, pulsatile flow through a curved, pipe bend. To demonstrate the ability of the method to simulate flows with complex, moving immersed boundaries we apply it to calculate pulsatile, physiological flow through a mechanical, bileaflet heart valve mounted in a model straight aorta with an anatomical-like triple sinus. PMID:19194533

  18. Higher-order in time "quasi-unconditionally stable" ADI solvers for the compressible Navier-Stokes equations in 2D and 3D curvilinear domains

    Bruno, Oscar P.; Cubillos, Max

    2016-02-01

    This paper introduces alternating-direction implicit (ADI) solvers of higher order of time-accuracy (orders two to six) for the compressible Navier-Stokes equations in two- and three-dimensional curvilinear domains. The higher-order accuracy in time results from 1) An application of the backward differentiation formulae time-stepping algorithm (BDF) in conjunction with 2) A BDF-like extrapolation technique for certain components of the nonlinear terms (which makes use of nonlinear solves unnecessary), as well as 3) A novel application of the Douglas-Gunn splitting (which greatly facilitates handling of boundary conditions while preserving higher-order accuracy in time). As suggested by our theoretical analysis of the algorithms for a variety of special cases, an extensive set of numerical experiments clearly indicate that all of the BDF-based ADI algorithms proposed in this paper are "quasi-unconditionally stable" in the following sense: each algorithm is stable for all couples (h , Δt)of spatial and temporal mesh sizes in a problem-dependent rectangular neighborhood of the form (0 ,Mh) × (0 ,Mt). In other words, for each fixed value of Δt below a certain threshold, the Navier-Stokes solvers presented in this paper are stable for arbitrarily small spatial mesh-sizes. The second-order formulation has further been rigorously shown to be unconditionally stable for linear hyperbolic and parabolic equations in two-dimensional space. Although implicit ADI solvers for the Navier-Stokes equations with nominal second-order of temporal accuracy have been proposed in the past, the algorithms presented in this paper are the first ADI-based Navier-Stokes solvers for which second-order or better accuracy has been verified in practice under non-trivial (non-periodic) boundary conditions.

  19. Blender 3D cookbook

    Valenza, Enrico

    2015-01-01

    This book is aimed at the professionals that already have good 3D CGI experience with commercial packages and have now decided to try the open source Blender and want to experiment with something more complex than the average tutorials on the web. However, it's also aimed at the intermediate Blender users who simply want to go some steps further.It's taken for granted that you already know how to move inside the Blender interface, that you already have 3D modeling knowledge, and also that of basic 3D modeling and rendering concepts, for example, edge-loops, n-gons, or samples. In any case, it'

  20. Imaging Nuclear Waste Plumes at the Hanford Site using Large Domain 3D High Resolution Resistivity Methods and the New Parallel-Processing EarthImager3DCL Program

    Greenwood, J.; Rucker, D.; Levitt, M.; Yang, X.; Lagmanson, M.

    2007-12-01

    High Resolution Resistivity data is currently used by hydroGEOPHYSICS, Inc to detect and characterize the distribution of suspected contaminant plumes beneath leaking tanks and disposal sites within the U.S. Department of Energy Hanford Site, in Eastern Washington State. The success of the characterization effort has led to resistivity data acquisition in extremely large survey areas exceeding 0.6 km2 and containing over 6,000 electrodes. Optimal data processing results are achieved by utilizing 105 data points within a single finite difference or finite element model domain. The large number of measurements and electrodes and high resolution of the modeling domain requires a model mesh of over 106 nodes. Existing commercially available resistivity inversion software could not support the domain size due to software and hardware limitations. hydroGEOPHYSICS, Inc teamed with Advanced Geosciences, Inc to advance the existing EarthImager3D inversion software to allow for parallel-processing and large memory support under a 64 bit operating system. The basis for the selection of EarthImager3D is demonstrated with a series of verification tests and benchmark comparisons using synthetic test models, field scale experiments and 6 months of intensive modeling using an array of multi-processor servers. The results of benchmark testing show equivalence to other industry standard inversion codes that perform the same function on significantly smaller domain models. hydroGEOPHYSICS, Inc included the use of 214 steel-cased monitoring wells as "long electrodes", 6000 surface electrodes and 8 buried point source electrodes. Advanced Geosciences, Inc. implemented a long electrode modeling function to support the Hanford Site well casing data. This utility is unique to commercial resistivity inversion software, and was evaluated through a series of laboratory and field scale tests using engineered subsurface plumes. The Hanford site is an ideal proving ground for these methods due

  1. Real-time all-optical OFDM transmission system based on time-domain optical fourier transformation

    Guan, Pengyu; Kong, Deming; Røge, Kasper Meldgaard;

    2014-01-01

    We propose a novel simple all-optical OFDM transmission system based on time-domain OFT using time-lenses. A real-time 160 Gbit/s DPSK OFDM transmission with 16 decorrelated data subcarriers is successfully demonstrated over 100 km.......We propose a novel simple all-optical OFDM transmission system based on time-domain OFT using time-lenses. A real-time 160 Gbit/s DPSK OFDM transmission with 16 decorrelated data subcarriers is successfully demonstrated over 100 km....

  2. 3D Digital Modelling

    Hundebøl, Jesper

    wave of new building information modelling tools demands further investigation, not least because of industry representatives' somewhat coarse parlance: Now the word is spreading -3D digital modelling is nothing less than a revolution, a shift of paradigm, a new alphabet... Research qeustions. Based...... on empirical probes (interviews, observations, written inscriptions) within the Danish construction industry this paper explores the organizational and managerial dynamics of 3D Digital Modelling. The paper intends to - Illustrate how the network of (non-)human actors engaged in the promotion (and arrest) of 3......D Modelling (in Denmark) stabilizes - Examine how 3D Modelling manifests itself in the early design phases of a construction project with a view to discuss the effects hereof for i.a. the management of the building process. Structure. The paper introduces a few, basic methodological concepts...

  3. Professional Papervision3D

    Lively, Michael

    2010-01-01

    Professional Papervision3D describes how Papervision3D works and how real world applications are built, with a clear look at essential topics such as building websites and games, creating virtual tours, and Adobe's Flash 10. Readers learn important techniques through hands-on applications, and build on those skills as the book progresses. The companion website contains all code examples, video step-by-step explanations, and a collada repository.

  4. Trabecular-iris circumference volume in open angle eyes using swept-source fourier domain anterior segment optical coherence tomography.

    Rigi, Mohammed; Blieden, Lauren S; Nguyen, Donna; Chuang, Alice Z; Baker, Laura A; Bell, Nicholas P; Lee, David A; Mankiewicz, Kimberly A; Feldman, Robert M

    2014-01-01

    Purpose. To introduce a new anterior segment optical coherence tomography parameter, trabecular-iris circumference volume (TICV), which measures the integrated volume of the peripheral angle, and establish a reference range in normal, open angle eyes. Methods. One eye of each participant with open angles and a normal anterior segment was imaged using 3D mode by the CASIA SS-1000 (Tomey, Nagoya, Japan). Trabecular-iris space area (TISA) and TICV at 500 and 750 µm were calculated. Analysis of covariance was performed to examine the effect of age and its interaction with spherical equivalent. Results. The study included 100 participants with a mean age of 50 (±15) years (range 20-79). TICV showed a normal distribution with a mean (±SD) value of 4.75 µL (±2.30) for TICV500 and a mean (±SD) value of 8.90 µL (±3.88) for TICV750. Overall, TICV showed an age-related reduction (P = 0.035). In addition, angle volume increased with increased myopia for all age groups, except for those older than 65 years. Conclusions. This study introduces a new parameter to measure peripheral angle volume, TICV, with age-adjusted normal ranges for open angle eyes. Further investigation is warranted to determine the clinical utility of this new parameter. PMID:25210623

  5. Trabecular-Iris Circumference Volume in Open Angle Eyes Using Swept-Source Fourier Domain Anterior Segment Optical Coherence Tomography

    Mohammed Rigi

    2014-01-01

    Full Text Available Purpose. To introduce a new anterior segment optical coherence tomography parameter, trabecular-iris circumference volume (TICV, which measures the integrated volume of the peripheral angle, and establish a reference range in normal, open angle eyes. Methods. One eye of each participant with open angles and a normal anterior segment was imaged using 3D mode by the CASIA SS-1000 (Tomey, Nagoya, Japan. Trabecular-iris space area (TISA and TICV at 500 and 750 µm were calculated. Analysis of covariance was performed to examine the effect of age and its interaction with spherical equivalent. Results. The study included 100 participants with a mean age of 50 (±15 years (range 20–79. TICV showed a normal distribution with a mean (±SD value of 4.75 µL (±2.30 for TICV500 and a mean (±SD value of 8.90 µL (±3.88 for TICV750. Overall, TICV showed an age-related reduction (P=0.035. In addition, angle volume increased with increased myopia for all age groups, except for those older than 65 years. Conclusions. This study introduces a new parameter to measure peripheral angle volume, TICV, with age-adjusted normal ranges for open angle eyes. Further investigation is warranted to determine the clinical utility of this new parameter.

  6. Measurement of the total retinal blood flow using dual beam Fourier-domain Doppler optical coherence tomography with orthogonal detection planes

    Doblhoff-Dier, Veronika; Schmetterer, Leopold; Vilser, Walthard; Garhöfer, Gerhard; Gröschl, Martin; Leitgeb, Rainer A.; Werkmeister, René M.

    2014-01-01

    We present a system capable of measuring the total retinal blood flow using a combination of dual beam Fourier-domain Doppler optical coherence tomography with orthogonal detection planes and a fundus camera-based retinal vessel analyzer. Our results show a high degree of conformity of venous and arterial flows, which corroborates the validity of the measurements. In accordance with Murray’s law, the log-log regression coefficient between vessel diameter and blood flow was found to be ~3. The blood’s velocity scaled linearly with the vessel diameter at higher diameters (> 60 µm), but showed a clear divergence from the linear dependence at lower diameters. Good agreement with literature data and the large range and high measurement sensitivity point to a high potential for further investigations. PMID:24575355

  7. Uniform spacing interrogation of a Fourier domain mode-locked fiber Bragg grating sensor system using a polarization-maintaining fiber Sagnac interferometer

    A novel linearized interrogation method is presented for a Fourier domain mode-locked (FDML) fiber Bragg grating (FBG) sensor system. In a high speed regime over several tens of kHz modulations, a sinusoidal wave is available to scan the center wavelength of an FDML wavelength-swept laser, instead of a conventional triangular wave. However, sinusoidal wave modulation suffers from an exaggerated non-uniform wavelength-spacing response in demodulating the time-encoded parameter to the absolute wavelength. In this work, the calibration signal from a polarization-maintaining fiber Sagnac interferometer shares the FDML wavelength-swept laser for FBG sensors to convert the time-encoded FBG signal to the wavelength-encoded uniform-spacing signal. (paper)

  8. Magnetic model for Mn2La2 developed from spectroscopic studies with inelastic neutron scattering and frequency-domain Fourier-transform THz EPR

    Molecular nanomagnets which contain several magnetic centers with a large single-ion magnetic anisotropy are of general interest, because they could lead to interesting phenomena such as single-molecule magnet (SMM) behavior. We performed spectroscopic experiments on Mn2La2 using inelastic neutron scattering at the direct time-of-flight disc chopper spectrometer IN5 at ILL and the newly developed frequency-domain Fourier-transform THz EPR at BESSY. Based on the experimental results a magnetic model has been developed. It is discussed why no SMM behavior was observed, even though Mn2La2 exhibits a remarkably high energy barrier of about 37 K for spin relaxation. Furthermore our results can be applied to analogous clusters, with the diamagnetic LaIII ions replaced by magnetic rare earth ions.

  9. Magnetic model for Mn{sub 2}La{sub 2} developed from spectroscopic studies with inelastic neutron scattering and frequency-domain Fourier-transform THz EPR

    Milazzo, R.; Nehrkorn, J.; Stuiber, S.; Waldmann, O. [Physikalisches Institut, Universitaet Freiburg (Germany); Akhtar, M.N.; Lan, Y.; Powell, A.K. [Institut fuer Anorganische Chemie, Universitaet Karlsruhe, KIT (Germany); Mutka, H. [Institut Laue Langevin, Grenoble (France); Dreiser, J. [Swiss Light Source, Paul Scherrer Institut (Switzerland); Schnegg, A. [Helmholtz-Zentrum Berlin, Institut fuer Silizium-Photovoltaik (Germany); Holldack, K. [Helmholtz-Zentrum Berlin, Institut fuer Synchrotonstrahlung (Germany)

    2011-07-01

    Molecular nanomagnets which contain several magnetic centers with a large single-ion magnetic anisotropy are of general interest, because they could lead to interesting phenomena such as single-molecule magnet (SMM) behavior. We performed spectroscopic experiments on Mn{sub 2}La{sub 2} using inelastic neutron scattering at the direct time-of-flight disc chopper spectrometer IN5 at ILL and the newly developed frequency-domain Fourier-transform THz EPR at BESSY. Based on the experimental results a magnetic model has been developed. It is discussed why no SMM behavior was observed, even though Mn{sub 2}La{sub 2} exhibits a remarkably high energy barrier of about 37 K for spin relaxation. Furthermore our results can be applied to analogous clusters, with the diamagnetic La{sup I}II ions replaced by magnetic rare earth ions.

  10. Three-dimensional Fourier-domain optical coherence tomography of alveolar mechanics in stepwise inflated and deflated isolated and perfused rabbit lungs

    Krueger, Alexander; Knels, Lilla; Meissner, Sven; Wendel, Martina; Heller, Axel R.; Lambeck, Thomas; Koch, Thea; Koch, Edmund

    2007-07-01

    Fourier domain optical coherence tomography (FD-OCT) was used to acquire three-dimensional image stacks of isolated and perfused rabbit lungs (n = 4) at different constant pulmonary airway pressures (CPAP) and during vascular fixation. After despeckling and applying a threshold, the images were segmented into air and tissue, and registered to each other to compensate for movement between CPAP steps. The air-filled cross-sectional areas were quantified using a semi-automatic algorithm. The cross-sectional area of alveolar structures taken at all three perpendicular planes increased with increasing CPAP. Between the minimal CPAP of 3 mbar and the maximum of 25 mbar the areas increased to about 140% of their initial value. There was no systematic dependency of inflation rate on initial size of the alveolar structure. During the perfusion fixation of the lungs with glutaraldehyde morphometric changes of the alveolar geometry measured with FD-OCT were negligible.

  11. Retinal polarization-sensitive optical coherence tomography at 1060 nm with 350 kHz A-scan rate using an Fourier domain mode locked laser

    Torzicky, Teresa; Marschall, Sebastian; Pircher, Michael;

    2013-01-01

    -dimensional data sets of healthy human volunteers show different polarization characteristics in the eye, such as depolarization in the retinal pigment epithelium and birefringence in retinal nerve fiber layer and sclera. The increased speed allows imaging of large volumes with reduced motion artifacts. Moreover......We present a novel, high-speed, polarization-sensitive, optical coherence tomography set-up for retinal imaging operating at a central wavelength of 1060 nm which was tested for in vivo imaging in healthy human volunteers. We use the system in combination with a Fourier domain mode locked laser......, averaging several two-dimensional frames allows the generation of high-definition B-scans without the use of an eye-tracking system. The increased penetration depth of the system, which is caused by the longer probing beam wavelength, is beneficial for imaging choroidal and scleral structures and allows...

  12. 3D Spectroscopic Instrumentation

    Bershady, Matthew A

    2009-01-01

    In this Chapter we review the challenges of, and opportunities for, 3D spectroscopy, and how these have lead to new and different approaches to sampling astronomical information. We describe and categorize existing instruments on 4m and 10m telescopes. Our primary focus is on grating-dispersed spectrographs. We discuss how to optimize dispersive elements, such as VPH gratings, to achieve adequate spectral resolution, high throughput, and efficient data packing to maximize spatial sampling for 3D spectroscopy. We review and compare the various coupling methods that make these spectrographs ``3D,'' including fibers, lenslets, slicers, and filtered multi-slits. We also describe Fabry-Perot and spatial-heterodyne interferometers, pointing out their advantages as field-widened systems relative to conventional, grating-dispersed spectrographs. We explore the parameter space all these instruments sample, highlighting regimes open for exploitation. Present instruments provide a foil for future development. We give an...

  13. 3D Projection Installations

    Halskov, Kim; Johansen, Stine Liv; Bach Mikkelsen, Michelle

    2014-01-01

    Three-dimensional projection installations are particular kinds of augmented spaces in which a digital 3-D model is projected onto a physical three-dimensional object, thereby fusing the digital content and the physical object. Based on interaction design research and media studies, this article...... contributes to the understanding of the distinctive characteristics of such a new medium, and identifies three strategies for designing 3-D projection installations: establishing space; interplay between the digital and the physical; and transformation of materiality. The principal empirical case, From...... Fingerplan to Loop City, is a 3-D projection installation presenting the history and future of city planning for the Copenhagen area in Denmark. The installation was presented as part of the 12th Architecture Biennale in Venice in 2010....

  14. 3D7-derived Plasmodium falciparum erythrocyte membrane protein 1 is a frequent target of naturally acquired antibodies recognizing protein domains in a particular pattern independent of malaria transmission intensity

    Joergensen, Louise; Vestergaard, Lasse S; Turner, Louise;

    2007-01-01

    Protection against Plasmodium falciparum malaria is largely mediated by IgG against surface Ags such as the erythrocyte membrane protein 1 family (PfEMP1) responsible for antigenic variation and sequestration of infected erythrocytes. PfEMP1 molecules can be divided into groups A, B/A, B, C, and B....../C. We have previously suggested that expression of groups A and B/A PfEMP1 is associated with severe disease and that Abs to these molecules are acquired earlier in life than Abs to PfEMP1 belonging to groups B, B/C, and C PfEMP1. In this study, we compared the acquisition of IgG to 20 rPfEMP1 domains...... derived from 3D7 in individuals living under markedly different malaria transmission intensity and were unable to find differences in the Ab acquisition rate to PfEMP1 of different groupings (A, B, or C) or domain type (alpha, beta, gamma, delta, epsilon, or x). Abs were acquired early in life in...

  15. Herramientas SIG 3D

    Francisco R. Feito Higueruela

    2010-04-01

    Full Text Available Applications of Geographical Information Systems on several Archeology fields have been increasing during the last years. Recent avances in these technologies make possible to work with more realistic 3D models. In this paper we introduce a new paradigm for this system, the GIS Thetrahedron, in which we define the fundamental elements of GIS, in order to provide a better understanding of their capabilities. At the same time the basic 3D characteristics of some comercial and open source software are described, as well as the application to some samples on archeological researchs

  16. Bootstrapping 3D fermions

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-01

    We study the conformal bootstrap for a 4-point function of fermions in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  17. TOWARDS: 3D INTERNET

    Ms. Swapnali R. Ghadge

    2013-01-01

    In today’s ever-shifting media landscape, it can be a complex task to find effective ways to reach your desired audience. As traditional media such as television continue to lose audience share, one venue in particular stands out for its ability to attract highly motivated audiences and for its tremendous growth potential the 3D Internet. The concept of '3D Internet' has recently come into the spotlight in the R&D arena, catching the attention of many people, and leading to a lot o...

  18. 3D Dental Scanner

    Kotek, L.

    2015-01-01

    This paper is about 3D scan of plaster dental casts. The main aim of the work is a hardware and software proposition of 3D scan system for scanning of dental casts. There were used camera, projector and rotate table for this scanning system. Surface triangulation was used, taking benefits of projections of structured light on object, which is being scanned. The rotate table is controlled by PC. The camera, projector and rotate table are synchronized by PC. Controlling of stepper motor is prov...

  19. Interaktiv 3D design

    Villaume, René Domine; Ørstrup, Finn Rude

    2002-01-01

    Projektet undersøger potentialet for interaktiv 3D design via Internettet. Arkitekt Jørn Utzons projekt til Espansiva blev udviklet som et byggesystem med det mål, at kunne skabe mangfoldige planmuligheder og mangfoldige facade- og rumudformninger. Systemets bygningskomponenter er digitaliseret som...... 3D elementer og gjort tilgængelige. Via Internettet er det nu muligt at sammenstille og afprøve en uendelig  række bygningstyper som  systemet blev tænkt og udviklet til....

  20. 3-D electromagnetic induction studies using the Swarm constellation: Mapping conductivity anomalies in the Earth's mantle

    Kuvshinov, A.; Sabaka, T.; Olsen, Nils

    2006-01-01

    An approach is presented to detect deep-seated regional conductivity anomalies by analysis of magnetic observations taken by low-Earth-orbiting satellites. The approach deals with recovery of C-responses on a regular grid and starts with a determination of time series of external and internal...... validation of the approach, 3 years of realistic synthetic data at Simulated orbits of the forthcoming Swarm constellation of 3 satellites have been used. To obtain the synthetic data for a given 3-D conductivity Earth's model a time-domain scheme has been applied which relies oil a Fourier transformation of...... the inducing field, and oil a frequency domain forward modelling. The conductivity model consists of a thin Surface layer of realistic conductance and a 3-D mantle that incorporates a hypothetic deep regional anomaly beneath the Pacific Ocean plate. To establish the ability of the approach to capture...

  1. Investigation of pharmaceutical drugs and caffeine-containing foods using Fourier and terahertz time-domain spectroscopy

    KaraliÅ«nas, Mindaugas; Venckevičius, Rimvydas; Kašalynas, Irmantas; Puc, Uroš; Abina, Andreja; Jeglič, Anton; Zidanšek, Aleksander; Valušis, Gintaras

    2015-08-01

    Several pharmaceutical drugs, such as alprazolam, ibuprofen, acetaminophen, activated carbon and others, and caffeine-containing foods were tested using terahertz (THz) time domain spectroscopy in the range from 0.3 to 2 THz. The dry powder of pharmaceutical drugs was mixed with HDPE and pressed into the pellets using hydraulic press. The coffee grounds were also pressed into the pellets after ball-milling and mixing with HDPE. The caffeine containing liquid foods were dried out on the paper strips of various stacking. Experiments allow one to determine characteristic spectral signatures of the investigated substances within THz range caused by active pharmaceutical ingredients, like in the case of caffeine, as well as supporting pharmaceutical ingredients. Spectroscopic THz imaging approach is considered as a possible option to identify packaged pharmaceutical drugs. The caffeine spectral features in the tested caffeine containing foods are difficult to observed due to the low caffeine concentration and complex caffeine chemical surrounding.

  2. 3D Harmonic Echocardiography:

    M.M. Voormolen

    2007-01-01

    textabstractThree dimensional (3D) echocardiography has recently developed from an experimental technique in the ’90 towards an imaging modality for the daily clinical practice. This dissertation describes the considerations, implementation, validation and clinical application of a unique

  3. Tangible 3D Modelling

    Hejlesen, Aske K.; Ovesen, Nis

    2012-01-01

    This paper presents an experimental approach to teaching 3D modelling techniques in an Industrial Design programme. The approach includes the use of tangible free form models as tools for improving the overall learning. The paper is based on lecturer and student experiences obtained through...

  4. Shaping 3-D boxes

    Stenholt, Rasmus; Madsen, Claus B.

    2011-01-01

    Enabling users to shape 3-D boxes in immersive virtual environments is a non-trivial problem. In this paper, a new family of techniques for creating rectangular boxes of arbitrary position, orientation, and size is presented and evaluated. These new techniques are based solely on position data...

  5. Comparison of retinal thickness by Fourier-domain optical coherence tomography and OCT retinal image analysis software segmentation analysis derived from Stratus optical coherence tomography images

    Tátrai, Erika; Ranganathan, Sudarshan; Ferencz, Mária; Debuc, Delia Cabrera; Somfai, Gábor Márk

    2011-05-01

    Purpose: To compare thickness measurements between Fourier-domain optical coherence tomography (FD-OCT) and time-domain OCT images analyzed with a custom-built OCT retinal image analysis software (OCTRIMA). Methods: Macular mapping (MM) by StratusOCT and MM5 and MM6 scanning protocols by an RTVue-100 FD-OCT device are performed on 11 subjects with no retinal pathology. Retinal thickness (RT) and the thickness of the ganglion cell complex (GCC) obtained with the MM6 protocol are compared for each early treatment diabetic retinopathy study (ETDRS)-like region with corresponding results obtained with OCTRIMA. RT results are compared by analysis of variance with Dunnett post hoc test, while GCC results are compared by paired t-test. Results: A high correlation is obtained for the RT between OCTRIMA and MM5 and MM6 protocols. In all regions, the StratusOCT provide the lowest RT values (mean difference 43 +/- 8 μm compared to OCTRIMA, and 42 +/- 14 μm compared to RTVue MM6). All RTVue GCC measurements were significantly thicker (mean difference between 6 and 12 μm) than the GCC measurements of OCTRIMA. Conclusion: High correspondence of RT measurements is obtained not only for RT but also for the segmentation of intraretinal layers between FD-OCT and StratusOCT-derived OCTRIMA analysis. However, a correction factor is required to compensate for OCT-specific differences to make measurements more comparable to any available OCT device.

  6. Fourier series

    Tolstov, Georgi P

    1962-01-01

    Richard A. Silverman's series of translations of outstanding Russian textbooks and monographs is well-known to people in the fields of mathematics, physics, and engineering. The present book is another excellent text from this series, a valuable addition to the English-language literature on Fourier series.This edition is organized into nine well-defined chapters: Trigonometric Fourier Series, Orthogonal Systems, Convergence of Trigonometric Fourier Series, Trigonometric Series with Decreasing Coefficients, Operations on Fourier Series, Summation of Trigonometric Fourier Series, Double Fourie

  7. 3D animace

    Klusoň, Jindřich

    2010-01-01

    Computer animation has a growing importance and application in the world. With expansion of technologies increases quality of the final animation as well as number of 3D animation software. This thesis is currently mapped animation software for creating animation in film, television industry and video games which are advisable users requirements. Of them were selected according to criteria the best - Autodesk Maya 2011. This animation software is unique with tools for creating special effects...

  8. Coseismic slip distribution of the 2015 Mw7.8 Gorkha, Nepal, earthquake from joint inversion of GPS and InSAR data for slip within a 3-D heterogeneous Domain

    Tung, Sui; Masterlark, Timothy

    2016-05-01

    We derive a coseismic slip model of the 2015 Mw7.8 Gorkha earthquake on the basis of GPS and line-of-sight displacements from ALOS-2 descending interferograms, using Green's functions calculated with a 3-D finite element model (FEM). The FEM simulates a nonuniform distribution of elastic material properties and a precise geometric configuration of the irregular topographical surface. The rupturing fault is modeled as a low-angle and north dipping surface within the Main Frontal Thrust along the convergent margin of the Himalayas. The optimal model that inherits heterogeneous material properties provides a significantly better solution than that in a homogenous domain at the 95% confidence interval. The best fit solution for the domain having a nonuniform distribution of material properties reveals a rhombus-shaped slip zone of three composite asperities. Slip is primarily concentrated at a depth of 15 km with both dip-slip (maximum 6.54 m) and strike-slip (maximum 2.0 m) components, giving rise to a geodetic-based moment of 1.09 × 1021 Nm in general agreement with the seismological estimate. The optimal relative weights among GPS and interferometric synthetic aperture radar (InSAR) are deduced from a new method, MC-HVCE which combines a Monte Carlo search and a Helmert Method of Variance Components Estimation. This method determines the relative weights in a systemic approach which preserves the intrinsic solution smoothness. The joint solution is significantly better than those inverted from each individual data set. This methodology allows us to integrate multiple data sets of geodetic observations with seismic tomography, in an effort to achieve a better understanding of seismic ruptures within crustal heterogeneity.

  9. Massive 3D Supergravity

    Andringa, Roel; de Roo, Mees; Hohm, Olaf; Sezgin, Ergin; Townsend, Paul K

    2009-01-01

    We construct the N=1 three-dimensional supergravity theory with cosmological, Einstein-Hilbert, Lorentz Chern-Simons, and general curvature squared terms. We determine the general supersymmetric configuration, and find a family of supersymmetric adS vacua with the supersymmetric Minkowski vacuum as a limiting case. Linearizing about the Minkowski vacuum, we find three classes of unitary theories; one is the supersymmetric extension of the recently discovered `massive 3D gravity'. Another is a `new topologically massive supergravity' (with no Einstein-Hilbert term) that propagates a single (2,3/2) helicity supermultiplet.

  10. Massive 3D supergravity

    Andringa, Roel; Bergshoeff, Eric A; De Roo, Mees; Hohm, Olaf [Centre for Theoretical Physics, University of Groningen, Nijenborgh 4, 9747 AG Groningen (Netherlands); Sezgin, Ergin [George and Cynthia Woods Mitchell Institute for Fundamental Physics and Astronomy, Texas A and M University, College Station, TX 77843 (United States); Townsend, Paul K, E-mail: E.A.Bergshoeff@rug.n, E-mail: O.Hohm@rug.n, E-mail: sezgin@tamu.ed, E-mail: P.K.Townsend@damtp.cam.ac.u [Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WA (United Kingdom)

    2010-01-21

    We construct the N=1 three-dimensional supergravity theory with cosmological, Einstein-Hilbert, Lorentz Chern-Simons, and general curvature squared terms. We determine the general supersymmetric configuration, and find a family of supersymmetric adS vacua with the supersymmetric Minkowski vacuum as a limiting case. Linearizing about the Minkowski vacuum, we find three classes of unitary theories; one is the supersymmetric extension of the recently discovered 'massive 3D gravity'. Another is a 'new topologically massive supergravity' (with no Einstein-Hilbert term) that propagates a single (2,3/2) helicity supermultiplet.

  11. TOWARDS: 3D INTERNET

    Ms. Swapnali R. Ghadge

    2013-08-01

    Full Text Available In today’s ever-shifting media landscape, it can be a complex task to find effective ways to reach your desired audience. As traditional media such as television continue to lose audience share, one venue in particular stands out for its ability to attract highly motivated audiences and for its tremendous growth potential the 3D Internet. The concept of '3D Internet' has recently come into the spotlight in the R&D arena, catching the attention of many people, and leading to a lot of discussions. Basically, one can look into this matter from a few different perspectives: visualization and representation of information, and creation and transportation of information, among others. All of them still constitute research challenges, as no products or services are yet available or foreseen for the near future. Nevertheless, one can try to envisage the directions that can be taken towards achieving this goal. People who take part in virtual worlds stay online longer with a heightened level of interest. To take advantage of that interest, diverse businesses and organizations have claimed an early stake in this fast-growing market. They include technology leaders such as IBM, Microsoft, and Cisco, companies such as BMW, Toyota, Circuit City, Coca Cola, and Calvin Klein, and scores of universities, including Harvard, Stanford and Penn State.

  12. Real-time display with large field of view on fourier domain optical coherence tomography at 1310 nm wavelength for dermatology

    Xiao, Qing; Hou, Jue; Fu, Ling

    2012-06-01

    A Fourier domain optical coherence tomography (OCT) system with 1310 nm light was demonstrated to study inflammatory human skin and the skin coated with a moisturizer in vivo. By using a graphics processing unit (GPU), the display rate could reach 20 frames/s with 1000 A-scans contained in one image. The field of view (FOV) of the cross-sectional image is 7 mm in the lateral direction and the penetration depth is ˜1 mm in skin. The result shows that, in inflammatory skin, the epidermis became thicker and had a decreased scattering; furthermore, the region of the severe lesion present an uneven thickness of the epidermis compared with the peripheral area. For the result of a finger tip coated with the moisturizer, the antireflection effect was significant and the stratum corneum became more transparent. In this letter, we demonstrated that real-time display with a large FOV could enable screening of a large tissue area; thereby increasing the dermatologic diagnostic potential of the method by permitting a comparison of the lesion and the normal peripheral region.

  13. Measurements of multiple gas parameters in a pulsed-detonation combustor using time-division-multiplexed Fourier-domain mode-locked lasers.

    Caswell, Andrew W; Roy, Sukesh; An, Xinliang; Sanders, Scott T; Schauer, Frederick R; Gord, James R

    2013-04-20

    Hyperspectral absorption spectroscopy is being used to monitor gas temperature, velocity, pressure, and H(2)O mole fraction in a research-grade pulsed-detonation combustor (PDC) at the Air Force Research Laboratory. The hyperspectral source employed is termed the TDM 3-FDML because it consists of three time-division-multiplexed (TDM) Fourier-domain mode-locked (FDML) lasers. This optical-fiber-based source monitors sufficient spectral information in the H(2)O absorption spectrum near 1350 nm to permit measurements over the wide range of conditions encountered throughout the PDC cycle. Doppler velocimetry based on absorption features is accomplished using a counterpropagating beam approach that is designed to minimize common-mode flow noise. The PDC in this study is operated in two configurations: one in which the combustion tube exhausts directly to the ambient environment and another in which it feeds an automotive-style turbocharger to assess the performance of a detonation-driven turbine. Because the enthalpy flow [kilojoule/second] is important in assessing the performance of the PDC in various configurations, it is calculated from the measured gas properties. PMID:23669701

  14. Curating Architectural 3D CAD Models

    MacKenzie Smith

    2009-06-01

    Full Text Available Normal 0 Increasing demand to manage and preserve 3-dimensional models for a variety of physical phenomena (e.g., building and engineering designs, computer games, or scientific visualizations is creating new challenges for digital archives. Preserving 3D models requires identifying technical formats for the models that can be maintained over time, and the available formats offer different advantages and disadvantages depending on the intended future uses of the models. Additionally, the metadata required to manage 3D models is not yet standardized, and getting intellectual proposal rights for digital models is uncharted territory.  The FACADE Project at MIT is investigating these challenges in the architecture, engineering and construction (AEC industry and has developed recommendations and systems to support digital archives in dealing with digital 3D models and related data. These results can also be generalized to other domains doing 3D modeling.

  15. Regularisation of 3D Signed Distance Fields

    Paulsen, Rasmus Reinhold; Bærentzen, Jakob Andreas; Larsen, Rasmus

    2009-01-01

    Signed 3D distance fields are used a in a variety of domains. From shape modelling to surface registration. They are typically computed based on sampled point sets. If the input point set contains holes, the behaviour of the zero-level surface of the distance field is not well defined. In this...

  16. Biocompatible 3D Matrix with Antimicrobial Properties

    Alberto Ion

    2016-01-01

    Full Text Available The aim of this study was to develop, characterize and assess the biological activity of a new regenerative 3D matrix with antimicrobial properties, based on collagen (COLL, hydroxyapatite (HAp, β-cyclodextrin (β-CD and usnic acid (UA. The prepared 3D matrix was characterized by Scanning Electron Microscopy (SEM, Fourier Transform Infrared Microscopy (FT-IRM, Transmission Electron Microscopy (TEM, and X-ray Diffraction (XRD. In vitro qualitative and quantitative analyses performed on cultured diploid cells demonstrated that the 3D matrix is biocompatible, allowing the normal development and growth of MG-63 osteoblast-like cells and exhibited an antimicrobial effect, especially on the Staphylococcus aureus strain, explained by the particular higher inhibitory activity of usnic acid (UA against Gram positive bacterial strains. Our data strongly recommend the obtained 3D matrix to be used as a successful alternative for the fabrication of three dimensional (3D anti-infective regeneration matrix for bone tissue engineering.

  17. 3D printing for dummies

    Hausman, Kalani Kirk

    2014-01-01

    Get started printing out 3D objects quickly and inexpensively! 3D printing is no longer just a figment of your imagination. This remarkable technology is coming to the masses with the growing availability of 3D printers. 3D printers create 3-dimensional layered models and they allow users to create prototypes that use multiple materials and colors.  This friendly-but-straightforward guide examines each type of 3D printing technology available today and gives artists, entrepreneurs, engineers, and hobbyists insight into the amazing things 3D printing has to offer. You'll discover methods for

  18. Superconformal index and 3d-3d correspondence for mapping cylinder/torus

    We probe the 3d-3d correspondence for mapping cylinder/torus using the superconformal index. We focus on the case when the fiber is a once-punctured torus (Σ1,1). The corresponding 3d field theories can be realized using duality domain wall theories in 4d N=2∗ theory. We show that the superconformal indices of the 3d theories are the SL(2,ℂ) Chern-Simons partition function on the mapping cylinder/torus. For the mapping torus, we also consider another realization of the corresponding 3d theory associated with ideal triangulation. The equality between the indices from the two descriptions for the mapping torus theory is reduced to a simple basis change of the Hilbert space for the SL(2,ℂ) Chern-Simons theory on ℝ×Σ1,1

  19. 3D monitor

    Szkandera, Jan

    2009-01-01

    Tato bakalářská práce se zabývá návrhem a realizací systému, který umožní obraz scény zobrazovaný na ploše vnímat prostorově. Prostorové vnímání 2D obrazové informace je umožněno jednak stereopromítáním a jednak tím, že se obraz mění v závislosti na poloze pozorovatele. Tato práce se zabývá hlavně druhým z těchto problémů. This Bachelor's thesis goal is to design and realize system, which allows user to perceive 2D visual information as three-dimensional. 3D visual preception of 2D image i...

  20. Mobile 3D tomograph

    Mobile tomographs often have the problem that high spatial resolution is impossible owing to the position or setup of the tomograph. While the tree tomograph developed by Messrs. Isotopenforschung Dr. Sauerwein GmbH worked well in practice, it is no longer used as the spatial resolution and measuring time are insufficient for many modern applications. The paper shows that the mechanical base of the method is sufficient for 3D CT measurements with modern detectors and X-ray tubes. CT measurements with very good statistics take less than 10 min. This means that mobile systems can be used, e.g. in examinations of non-transportable cultural objects or monuments. Enhancement of the spatial resolution of mobile tomographs capable of measuring in any position is made difficult by the fact that the tomograph has moving parts and will therefore have weight shifts. With the aid of tomographies whose spatial resolution is far higher than the mechanical accuracy, a correction method is presented for direct integration of the Feldkamp algorithm

  1. Ganglion cell complex and retinal nerve fiber layer measured by fourier-domain optical coherence tomography for early detection of structural damage in patients with preperimetric glaucoma

    Rolle T

    2011-07-01

    Full Text Available Teresa Rolle, Cristina Briamonte, Daniela Curto, Federico Maria GrignoloEye Clinic, Section of Ophthalmology, Department of Clinical Physiopathology, University of Torino, Torino, ItalyAims: To evaluate the capability of Fourier-domain optical coherence tomography (FD-OCT to detect structural damage in patients with preperimetric glaucoma.Methods: A total of 178 Caucasian subjects were enrolled in this cohort study: 116 preperimetric glaucoma patients and 52 healthy subjects. Using three-dimensional FD-OCT, the participants underwent imaging of the ganglion cell complex (GCC and the optic nerve head. Sensitivity, specificity, likelihood ratios, and predictive values were calculated for all parameters at the first and fifth percentiles. Areas under the curves (AUCs were generated for all parameters and were compared (Delong test. For both the GCC and the optic nerve head protocols, the OR logical disjunction (Boolean logic operator was calculated.Results: The AUCs didn’t significantly differ. Macular global loss volume had the largest AUC (0.81. Specificities were high at both the fifth and first percentiles (up to 97%, but sensitivities were low, especially at the first percentile (55%–27%.Conclusion: Macular and papillary diagnostic accuracies did not differ significantly based on the 95% confidence interval. The computation of the Boolean OR operator has been found to boost diagnostic accuracy. Using the software-provided classification, sensitivity and diagnostic accuracy were low for both the retinal nerve fiber layer and the GCC scans. FD-OCT does not seem to be decisive for early detection of structural damage in patients with no functional impairment. This suggests that there is a need for analysis software to be further refined to enhance glaucoma diagnostic capability.Keywords: OCT, RNFL, GCC, diagnostic accuracy 

  2. Detection of photoreceptor disruption by adaptive optics fundus imaging and Fourier-domain optical coherence tomography in eyes with occult macular dystrophy

    Tatsuo Yamaguchi

    2011-03-01

    Full Text Available Yoshiyuki Kitaguchi1, Shunji Kusaka1, Tatsuo Yamaguchi2, Toshifumi Mihashi2, Takashi Fujikado11Department of Applied Visual Science, Osaka University Graduate School of Medicine, Osaka, Japan; 2Topcon Research Institute, Itabashi, JapanPurpose: To investigate the structural changes in the photoreceptors by adaptive optics (AO fundus imaging and Fourier-domain optical coherence tomography (FD-OCT in eyes with occult macular dystrophy (OMD.Design: Observational case reports.Methods: Eight eyes of four patients who were diagnosed with OMD were examined. All eyes had a complete ophthalmological examination. Multifocal electroretinograms (mfERGs were recorded from all eyes. AO and FD-OCT images of foveal photoreceptors were obtained.Results: The best-corrected visual acuity (BCVA of these eyes ranged from 20/20 to 20/200, and the ocular fundus was normal by conventional ocular examination in all eyes. The amplitudes of the mfERGs were decreased in the foveal area. The inner and outer segment (IS/OS junction of the photoreceptors in the foveal area was disrupted. The IS/OS junction was intact in one eye with a BCVA of 20/20, and the outer segment layer between the IS/OS junction and retinal pigment epithelium of the FD-OCT images was identified only in the center of the fovea. The AO images showed patchy dark areas in all eyes, which indicated a disruption of the mosaic of bright spots in the fovea.Conclusion: Structural changes of photoreceptors in OMD patients were detected tangentially by FD-OCT and en face by AO.Keywords: Photoreceptors, OMD, images, retinal imaging

  3. X3D: Extensible 3D Graphics Standard

    Daly, Leonard; Brutzman, Don

    2007-01-01

    The article of record as published may be located at http://dx.doi.org/10.1109/MSP.2007.905889 Extensible 3D (X3D) is the open standard for Web-delivered three-dimensional (3D) graphics. It specifies a declarative geometry definition language, a run-time engine, and an application program interface (API) that provide an interactive, animated, real-time environment for 3D graphics. The X3D specification documents are freely available, the standard can be used without paying any royalties,...

  4. 3D game environments create professional 3D game worlds

    Ahearn, Luke

    2008-01-01

    The ultimate resource to help you create triple-A quality art for a variety of game worlds; 3D Game Environments offers detailed tutorials on creating 3D models, applying 2D art to 3D models, and clear concise advice on issues of efficiency and optimization for a 3D game engine. Using Photoshop and 3ds Max as his primary tools, Luke Ahearn explains how to create realistic textures from photo source and uses a variety of techniques to portray dynamic and believable game worlds.From a modern city to a steamy jungle, learn about the planning and technological considerations for 3D modelin

  5. 3D Printing an Octohedron

    Aboufadel, Edward F.

    2014-01-01

    The purpose of this short paper is to describe a project to manufacture a regular octohedron on a 3D printer. We assume that the reader is familiar with the basics of 3D printing. In the project, we use fundamental ideas to calculate the vertices and faces of an octohedron. Then, we utilize the OPENSCAD program to create a virtual 3D model and an STereoLithography (.stl) file that can be used by a 3D printer.

  6. A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstruction.

    Moriya, Toshio; Acar, Erman; Cheng, R Holland; Ruotsalainen, Ulla

    2015-09-01

    In the single particle reconstruction, the initial 3D structure often suffers from the limited angular sampling artifact. Selecting 2D class averages of particle images generally improves the accuracy and efficiency of the reference-free 3D angle estimation, but causes an insufficient angular sampling to fill the information of the target object in the 3D frequency space. Similarly, the initial 3D structure by the random-conical tilt reconstruction has the well-known "missing cone" artifact. Here, we attempted to solve the limited angular sampling problem by sequentially applying maximum a posteriori estimate with expectation maximization algorithm (sMAP-EM). Using both simulated and experimental cryo-electron microscope images, the sMAP-EM was compared to the direct Fourier method on the basis of reconstruction error and resolution. To establish selection criteria of the final regularization weight for the sMAP-EM, the effects of noise level and sampling sparseness on the reconstructions were examined with evenly distributed sampling simulations. The frequency information filled in the missing cone of the conical tilt sampling simulations was assessed by developing new quantitative measurements. All the results of visual and numerical evaluations showed the sMAP-EM performed better than the direct Fourier method, regardless of the sampling method, noise level, and sampling sparseness. Furthermore, the frequency domain analysis demonstrated that the sMAP-EM can fill the meaningful information in the unmeasured angular space without detailed a priori knowledge of the objects. The current research demonstrated that the sMAP-EM has a high potential to facilitate the determination of 3D protein structures at near atomic-resolution. PMID:26193484

  7. 3D modelling and recognition

    Rodrigues, Marcos; Robinson, Alan; Alboul, Lyuba; Brink, Willie

    2006-01-01

    3D face recognition is an open field. In this paper we present a method for 3D facial recognition based on Principal Components Analysis. The method uses a relatively large number of facial measurements and ratios and yields reliable recognition. We also highlight our approach to sensor development for fast 3D model acquisition and automatic facial feature extraction.

  8. 3-D contextual Bayesian classifiers

    Larsen, Rasmus

    distribution for the pixel values as well as a prior distribution for the configuration of class variables within the cross that is made of a pixel and its four nearest neighbours. We will extend these algorithms to 3-D, i.e. we will specify a simultaneous Gaussian distribution for a pixel and its 6 nearest 3......-D neighbours, and generalise the class variable configuration distributions within the 3-D cross given in 2-D algorithms. The new 3-D algorithms are tested on a synthetic 3-D multivariate dataset....

  9. Taming Supersymmetric Defects in 3d-3d Correspondence

    Gang, Dongmin; Romo, Mauricio; Yamazaki, Masahito

    2015-01-01

    We study knots in 3d Chern-Simons theory with complex gauge group $SL(N,\\mathbb{C})$, in the context of its relation with 3d $\\mathcal{N}=2$ theory (the so-called 3d-3d correspondence). The defect has either co-dimension 2 or co-dimension 4 inside the 6d $(2,0)$ theory, which is compactified on a 3-manifold $\\hat{M}$. We identify such defects in various corners of the 3d-3d correspondence, namely in 3d $SL(N,\\mathbb{C})$ Chern-Simons theory, in 3d $\\mathcal{N}=2$ theory, in 5d $\\mathcal{N}=2$ super Yang-Mills theory, and in the M-theory holographic dual. We can make quantitative checks of the 3d-3d correspondence by computing partition functions at each of these theories. This Letter is a companion to a longer paper, which contains more details and more results.

  10. 3D face analysis for demographic biometrics

    Tokola, Ryan A [ORNL; Mikkilineni, Aravind K [ORNL; Boehnen, Chris Bensing [ORNL

    2015-01-01

    Despite being increasingly easy to acquire, 3D data is rarely used for face-based biometrics applications beyond identification. Recent work in image-based demographic biometrics has enjoyed much success, but these approaches suffer from the well-known limitations of 2D representations, particularly variations in illumination, texture, and pose, as well as a fundamental inability to describe 3D shape. This paper shows that simple 3D shape features in a face-based coordinate system are capable of representing many biometric attributes without problem-specific models or specialized domain knowledge. The same feature vector achieves impressive results for problems as diverse as age estimation, gender classification, and race classification.